Query 008448
Match_columns 565
No_of_seqs 378 out of 1642
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 12:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 3.9E-15 8.5E-20 139.1 11.4 83 335-418 31-117 (144)
2 KOG0144 RNA-binding protein CU 99.6 7.6E-16 1.6E-20 162.0 2.8 152 262-423 54-214 (510)
3 KOG0149 Predicted RNA-binding 99.5 2.1E-14 4.6E-19 141.8 6.7 75 337-413 11-89 (247)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.7E-13 3.6E-18 142.8 11.9 80 337-417 268-351 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 3.8E-13 8.2E-18 140.2 10.6 79 338-417 3-85 (352)
6 TIGR01645 half-pint poly-U bin 99.4 2.9E-13 6.2E-18 151.5 10.3 79 337-416 203-285 (612)
7 PF00076 RRM_1: RNA recognitio 99.4 4E-13 8.7E-18 107.0 7.9 67 341-408 1-70 (70)
8 KOG0125 Ataxin 2-binding prote 99.4 2.5E-13 5.5E-18 139.3 8.4 81 335-416 93-175 (376)
9 TIGR01659 sex-lethal sex-letha 99.4 2.2E-13 4.7E-18 144.1 8.1 82 337-419 192-279 (346)
10 TIGR01659 sex-lethal sex-letha 99.4 1.5E-12 3.2E-17 137.9 10.1 81 335-416 104-188 (346)
11 KOG0148 Apoptosis-promoting RN 99.4 1.6E-12 3.5E-17 130.7 8.7 141 262-419 82-242 (321)
12 PLN03120 nucleic acid binding 99.4 2.5E-12 5.4E-17 130.2 10.2 76 338-415 4-80 (260)
13 TIGR01628 PABP-1234 polyadenyl 99.4 8.7E-13 1.9E-17 146.8 7.2 84 336-420 283-369 (562)
14 KOG0153 Predicted RNA-binding 99.3 3E-12 6.4E-17 132.4 10.1 76 337-415 227-303 (377)
15 TIGR01622 SF-CC1 splicing fact 99.3 1.9E-12 4.2E-17 139.9 8.1 79 336-415 184-266 (457)
16 KOG0111 Cyclophilin-type pepti 99.3 1.1E-12 2.3E-17 128.6 5.2 80 337-417 9-92 (298)
17 KOG0113 U1 small nuclear ribon 99.3 7.6E-12 1.6E-16 127.3 9.9 93 328-421 91-187 (335)
18 PF14259 RRM_6: RNA recognitio 99.3 1.1E-11 2.3E-16 100.2 7.9 67 341-408 1-70 (70)
19 KOG0107 Alternative splicing f 99.3 1.1E-11 2.3E-16 118.2 7.9 79 337-417 9-87 (195)
20 PLN03213 repressor of silencin 99.3 1.4E-11 3E-16 131.7 9.2 78 337-415 9-88 (759)
21 KOG0122 Translation initiation 99.2 2.3E-11 4.9E-16 121.0 9.0 79 337-416 188-270 (270)
22 smart00362 RRM_2 RNA recogniti 99.2 4.9E-11 1.1E-15 93.1 9.0 70 340-410 1-72 (72)
23 TIGR01645 half-pint poly-U bin 99.2 2.3E-11 5E-16 136.4 10.0 77 337-414 106-186 (612)
24 PLN03121 nucleic acid binding 99.2 4.9E-11 1.1E-15 119.5 10.4 76 337-414 4-80 (243)
25 KOG4205 RNA-binding protein mu 99.2 9.6E-12 2.1E-16 129.5 4.9 151 262-420 26-181 (311)
26 KOG0148 Apoptosis-promoting RN 99.2 3E-11 6.5E-16 121.7 6.6 79 338-417 62-144 (321)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.4E-10 3.1E-15 127.0 11.7 78 337-415 294-375 (509)
28 COG0724 RNA-binding proteins ( 99.2 1.2E-10 2.6E-15 111.9 9.7 76 338-414 115-194 (306)
29 TIGR01628 PABP-1234 polyadenyl 99.2 9.4E-11 2E-15 130.6 10.0 74 340-414 2-79 (562)
30 TIGR01648 hnRNP-R-Q heterogene 99.1 1.5E-10 3.3E-15 129.5 10.9 78 336-418 231-310 (578)
31 smart00360 RRM RNA recognition 99.1 1.5E-10 3.3E-15 89.8 7.7 67 343-410 1-71 (71)
32 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 2E-10 4.3E-15 126.3 10.4 76 337-415 1-78 (481)
33 TIGR01648 hnRNP-R-Q heterogene 99.1 1.9E-10 4.1E-15 128.7 9.5 77 337-414 57-137 (578)
34 TIGR01622 SF-CC1 splicing fact 99.1 3.7E-10 8.1E-15 122.2 11.4 77 337-415 88-168 (457)
35 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 3.5E-10 7.6E-15 124.4 10.8 79 336-416 273-352 (481)
36 cd00590 RRM RRM (RNA recogniti 99.1 6.3E-10 1.4E-14 87.3 9.3 71 340-411 1-74 (74)
37 KOG4207 Predicted splicing fac 99.1 1.8E-10 3.8E-15 112.4 7.1 77 336-413 11-91 (256)
38 KOG0117 Heterogeneous nuclear 99.1 1.4E-10 3.1E-15 123.1 6.7 82 335-421 256-337 (506)
39 PF13893 RRM_5: RNA recognitio 99.0 6.4E-10 1.4E-14 86.7 7.5 56 356-412 1-56 (56)
40 KOG0131 Splicing factor 3b, su 99.0 5.2E-10 1.1E-14 107.4 6.5 76 337-413 8-87 (203)
41 KOG0127 Nucleolar protein fibr 99.0 7.7E-10 1.7E-14 119.9 8.4 82 338-420 117-201 (678)
42 KOG0126 Predicted RNA-binding 99.0 9E-11 1.9E-15 112.6 0.6 76 337-413 34-113 (219)
43 KOG0117 Heterogeneous nuclear 99.0 1.2E-09 2.7E-14 116.2 9.0 79 334-413 79-162 (506)
44 KOG0108 mRNA cleavage and poly 98.9 1.9E-09 4.1E-14 116.9 9.1 78 339-417 19-100 (435)
45 KOG0114 Predicted RNA-binding 98.9 7.1E-09 1.5E-13 91.8 9.2 78 337-415 17-95 (124)
46 smart00361 RRM_1 RNA recogniti 98.9 3.9E-09 8.6E-14 86.5 7.2 57 353-409 2-69 (70)
47 KOG4205 RNA-binding protein mu 98.9 8.8E-10 1.9E-14 115.0 4.1 81 337-419 5-89 (311)
48 KOG0124 Polypyrimidine tract-b 98.9 1E-09 2.2E-14 114.3 4.1 72 339-411 114-189 (544)
49 KOG0121 Nuclear cap-binding pr 98.9 2.9E-09 6.2E-14 97.4 6.4 76 337-413 35-114 (153)
50 KOG0105 Alternative splicing f 98.9 2.8E-09 6E-14 102.7 6.6 79 337-416 5-84 (241)
51 KOG0109 RNA-binding protein LA 98.9 1.9E-09 4.1E-14 109.7 5.7 79 339-422 3-81 (346)
52 KOG0147 Transcriptional coacti 98.9 2.2E-09 4.9E-14 116.7 5.9 80 339-419 279-362 (549)
53 KOG0109 RNA-binding protein LA 98.9 2.3E-09 4.9E-14 109.2 5.3 76 336-416 76-151 (346)
54 KOG0127 Nucleolar protein fibr 98.9 1.8E-08 3.8E-13 109.6 12.3 80 339-419 293-382 (678)
55 KOG0130 RNA-binding protein RB 98.8 5.9E-09 1.3E-13 96.1 5.4 79 339-418 73-155 (170)
56 TIGR01642 U2AF_lg U2 snRNP aux 98.8 2.1E-08 4.6E-13 109.9 9.7 74 336-413 173-258 (509)
57 KOG0131 Splicing factor 3b, su 98.8 3.8E-09 8.3E-14 101.5 3.3 82 337-419 95-181 (203)
58 KOG0144 RNA-binding protein CU 98.8 1.9E-08 4.1E-13 106.9 8.4 79 336-415 32-117 (510)
59 KOG0132 RNA polymerase II C-te 98.7 1.6E-08 3.5E-13 113.5 7.6 80 337-419 420-499 (894)
60 KOG0145 RNA-binding protein EL 98.7 4.7E-08 1E-12 98.5 8.8 77 338-415 278-358 (360)
61 KOG0145 RNA-binding protein EL 98.7 7.4E-08 1.6E-12 97.0 9.4 81 337-418 40-124 (360)
62 KOG0146 RNA-binding protein ET 98.6 5.9E-08 1.3E-12 98.0 6.6 87 337-424 18-110 (371)
63 KOG0123 Polyadenylate-binding 98.6 9.2E-08 2E-12 102.4 7.4 76 341-418 79-156 (369)
64 KOG4206 Spliceosomal protein s 98.6 1.2E-07 2.5E-12 94.0 7.5 84 337-421 8-96 (221)
65 KOG4212 RNA-binding protein hn 98.5 2.3E-07 5E-12 98.9 8.4 78 336-414 42-123 (608)
66 KOG4208 Nucleolar RNA-binding 98.5 2E-07 4.4E-12 91.3 7.0 78 337-415 48-130 (214)
67 KOG0146 RNA-binding protein ET 98.4 2.3E-07 5E-12 93.8 4.8 83 334-417 281-367 (371)
68 KOG0415 Predicted peptidyl pro 98.4 3.6E-07 7.9E-12 95.3 6.0 84 333-417 234-321 (479)
69 KOG0124 Polypyrimidine tract-b 98.3 6.2E-07 1.3E-11 93.9 6.3 74 339-413 211-288 (544)
70 KOG0110 RNA-binding protein (R 98.3 1.3E-06 2.8E-11 97.9 7.7 74 339-413 516-596 (725)
71 KOG0110 RNA-binding protein (R 98.3 5.6E-07 1.2E-11 100.7 4.5 80 338-418 613-696 (725)
72 KOG4661 Hsp27-ERE-TATA-binding 98.3 1.1E-06 2.3E-11 96.2 6.5 76 337-413 404-483 (940)
73 KOG0116 RasGAP SH3 binding pro 98.3 1.6E-06 3.5E-11 94.0 7.6 75 339-415 289-367 (419)
74 KOG0123 Polyadenylate-binding 98.3 9.3E-07 2E-11 94.8 5.4 80 337-417 269-351 (369)
75 KOG4212 RNA-binding protein hn 98.2 2.4E-06 5.3E-11 91.3 6.8 73 336-411 534-607 (608)
76 KOG0106 Alternative splicing f 98.1 1.9E-06 4.2E-11 85.7 4.1 72 339-415 2-73 (216)
77 KOG0151 Predicted splicing reg 98.1 1.1E-05 2.4E-10 90.5 8.7 79 335-414 171-256 (877)
78 KOG4454 RNA binding protein (R 98.0 1.9E-06 4.1E-11 85.3 2.1 80 334-415 5-87 (267)
79 KOG0533 RRM motif-containing p 98.0 1.5E-05 3.2E-10 81.0 7.7 80 335-415 80-162 (243)
80 KOG4209 Splicing factor RNPS1, 97.9 2E-05 4.3E-10 79.6 5.6 77 337-415 100-180 (231)
81 KOG0226 RNA-binding proteins [ 97.7 2.1E-05 4.5E-10 79.5 3.6 76 337-413 189-268 (290)
82 KOG1548 Transcription elongati 97.6 0.00061 1.3E-08 71.7 11.3 76 337-413 133-219 (382)
83 KOG1457 RNA binding protein (c 97.5 0.00027 5.9E-09 70.5 8.2 84 337-421 33-124 (284)
84 KOG4660 Protein Mei2, essentia 97.5 6.3E-05 1.4E-09 82.8 3.9 72 335-408 72-143 (549)
85 KOG4211 Splicing factor hnRNP- 97.5 0.00027 5.9E-09 77.0 8.5 78 336-416 8-87 (510)
86 PF00642 zf-CCCH: Zinc finger 97.4 3E-05 6.4E-10 52.8 -0.4 23 183-205 3-26 (27)
87 KOG0120 Splicing factor U2AF, 97.2 0.00084 1.8E-08 74.4 7.7 81 336-417 287-371 (500)
88 KOG2135 Proteins containing th 97.2 0.00063 1.4E-08 74.0 6.3 63 351-416 385-447 (526)
89 KOG4210 Nuclear localization s 97.0 0.00038 8.3E-09 72.4 2.7 80 337-418 183-267 (285)
90 KOG1190 Polypyrimidine tract-b 96.9 0.003 6.5E-08 67.8 8.7 76 338-414 297-372 (492)
91 smart00356 ZnF_C3H1 zinc finge 96.9 0.00045 9.8E-09 46.1 1.4 22 184-205 5-26 (27)
92 PF11608 Limkain-b1: Limkain b 96.8 0.0035 7.6E-08 54.1 6.2 72 339-417 3-79 (90)
93 KOG0106 Alternative splicing f 96.8 0.00091 2E-08 66.9 2.9 71 337-412 98-168 (216)
94 PF04059 RRM_2: RNA recognitio 96.6 0.011 2.4E-07 52.4 8.2 75 339-414 2-86 (97)
95 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0049 1.1E-07 48.4 5.4 52 339-394 2-53 (53)
96 KOG1855 Predicted RNA-binding 96.5 0.0014 2.9E-08 70.7 2.7 117 280-398 167-307 (484)
97 KOG4211 Splicing factor hnRNP- 96.5 0.0062 1.3E-07 66.8 7.6 75 337-413 102-180 (510)
98 KOG1548 Transcription elongati 96.5 0.016 3.4E-07 61.4 10.2 94 322-416 250-353 (382)
99 KOG0129 Predicted RNA-binding 96.5 0.0091 2E-07 65.8 8.5 77 335-413 367-452 (520)
100 KOG0147 Transcriptional coacti 96.3 0.0015 3.2E-08 72.2 1.5 73 339-413 180-256 (549)
101 PF08777 RRM_3: RNA binding mo 96.1 0.012 2.7E-07 52.5 5.9 55 340-397 3-57 (105)
102 COG5175 MOT2 Transcriptional r 96.1 0.011 2.3E-07 62.4 6.1 77 338-415 114-203 (480)
103 KOG4206 Spliceosomal protein s 96.0 0.023 5E-07 56.9 7.9 76 335-412 143-219 (221)
104 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.02 4.4E-07 50.9 6.6 70 340-414 8-91 (100)
105 KOG0129 Predicted RNA-binding 95.7 0.023 5.1E-07 62.7 7.0 60 336-397 257-326 (520)
106 KOG1457 RNA binding protein (c 95.6 0.012 2.5E-07 59.2 3.8 65 337-402 209-273 (284)
107 PF14608 zf-CCCH_2: Zinc finge 95.6 0.0064 1.4E-07 38.3 1.2 19 185-205 1-19 (19)
108 KOG0120 Splicing factor U2AF, 95.5 0.032 7E-07 62.1 7.3 62 354-415 424-492 (500)
109 KOG2185 Predicted RNA-processi 95.4 0.0053 1.1E-07 65.9 0.8 24 182-205 139-162 (486)
110 KOG1995 Conserved Zn-finger pr 95.3 0.019 4.1E-07 60.9 4.5 84 335-419 63-158 (351)
111 KOG3152 TBP-binding protein, a 95.1 0.012 2.7E-07 59.9 2.2 67 339-406 75-157 (278)
112 KOG4307 RNA binding protein RB 94.9 0.032 7E-07 63.4 5.0 81 336-417 432-516 (944)
113 KOG2314 Translation initiation 94.9 0.031 6.7E-07 62.4 4.8 74 339-413 59-142 (698)
114 KOG0128 RNA-binding protein SA 94.6 0.011 2.4E-07 68.4 0.6 76 338-414 736-814 (881)
115 KOG1190 Polypyrimidine tract-b 94.5 0.08 1.7E-06 57.3 6.6 78 335-413 411-489 (492)
116 PF08952 DUF1866: Domain of un 94.5 0.18 4E-06 47.8 8.2 77 332-414 21-106 (146)
117 KOG4849 mRNA cleavage factor I 94.2 0.049 1.1E-06 57.8 4.2 74 339-413 81-160 (498)
118 KOG1677 CCCH-type Zn-finger pr 94.0 0.023 5E-07 59.7 1.3 27 179-205 173-200 (332)
119 KOG4307 RNA binding protein RB 93.7 0.17 3.6E-06 58.0 7.5 72 339-411 868-943 (944)
120 KOG1456 Heterogeneous nuclear 93.4 0.3 6.4E-06 52.5 8.3 77 337-415 286-363 (494)
121 KOG0112 Large RNA-binding prot 93.1 0.16 3.5E-06 59.5 6.2 82 335-419 452-535 (975)
122 PF00658 PABP: Poly-adenylate 92.9 0.07 1.5E-06 44.8 2.2 49 8-57 22-71 (72)
123 smart00517 PolyA C-terminal do 92.8 0.12 2.7E-06 42.5 3.4 50 8-58 11-61 (64)
124 KOG1996 mRNA splicing factor [ 92.5 0.27 5.9E-06 51.3 6.2 62 353-414 300-366 (378)
125 KOG2202 U2 snRNP splicing fact 92.1 0.062 1.3E-06 55.0 1.1 60 354-413 83-146 (260)
126 KOG0128 RNA-binding protein SA 91.7 0.023 5E-07 65.8 -2.6 77 339-416 668-748 (881)
127 KOG1365 RNA-binding protein Fu 91.4 0.29 6.3E-06 52.7 5.1 69 341-411 164-239 (508)
128 KOG1456 Heterogeneous nuclear 91.3 1 2.2E-05 48.6 9.1 68 348-416 131-200 (494)
129 KOG0112 Large RNA-binding prot 91.0 0.051 1.1E-06 63.5 -0.9 77 337-414 371-450 (975)
130 KOG4676 Splicing factor, argin 89.9 0.54 1.2E-05 50.8 5.6 74 339-414 8-88 (479)
131 KOG1365 RNA-binding protein Fu 88.7 0.38 8.3E-06 51.8 3.5 76 338-414 280-361 (508)
132 KOG1039 Predicted E3 ubiquitin 88.6 0.15 3.2E-06 54.7 0.4 22 184-205 9-30 (344)
133 KOG2193 IGF-II mRNA-binding pr 88.2 0.45 9.7E-06 51.9 3.7 82 339-424 2-85 (584)
134 PF10309 DUF2414: Protein of u 88.1 2.3 5E-05 34.8 6.9 56 337-397 4-62 (62)
135 PF04847 Calcipressin: Calcipr 86.0 1.8 3.9E-05 42.6 6.2 63 352-416 8-72 (184)
136 PF15023 DUF4523: Protein of u 85.3 3.2 7E-05 39.6 7.1 74 335-413 83-160 (166)
137 KOG0105 Alternative splicing f 83.8 2.8 6E-05 41.6 6.3 71 339-413 116-188 (241)
138 KOG4285 Mitotic phosphoprotein 83.1 2.6 5.6E-05 44.5 6.1 64 352-418 209-273 (350)
139 KOG0115 RNA-binding protein p5 82.6 0.8 1.7E-05 47.1 2.2 74 339-413 32-112 (275)
140 KOG2068 MOT2 transcription fac 82.5 0.48 1E-05 50.3 0.5 80 339-419 78-167 (327)
141 KOG2416 Acinus (induces apopto 81.8 1.7 3.6E-05 49.4 4.4 77 334-413 440-520 (718)
142 KOG2494 C3H1-type Zn-finger pr 77.3 0.75 1.6E-05 48.7 -0.0 22 184-205 38-60 (331)
143 KOG1595 CCCH-type Zn-finger pr 76.5 1.2 2.5E-05 50.0 1.2 23 183-205 236-258 (528)
144 KOG2253 U1 snRNP complex, subu 74.9 2.5 5.4E-05 48.5 3.3 74 333-412 35-108 (668)
145 PF10650 zf-C3H1: Putative zin 73.7 1.7 3.8E-05 28.9 1.0 20 185-205 2-22 (23)
146 KOG1763 Uncharacterized conser 71.0 1.4 3.1E-05 46.1 0.2 21 185-205 94-114 (343)
147 COG5084 YTH1 Cleavage and poly 70.9 1.9 4.2E-05 45.2 1.1 23 183-205 134-157 (285)
148 PF08675 RNA_bind: RNA binding 69.3 18 0.0004 31.6 6.5 56 337-398 8-63 (87)
149 PF03467 Smg4_UPF3: Smg-4/UPF3 68.0 6.8 0.00015 38.2 4.2 66 338-404 7-82 (176)
150 KOG1492 C3H1-type Zn-finger pr 66.8 2.5 5.4E-05 42.7 0.9 21 185-205 208-229 (377)
151 KOG4210 Nuclear localization s 63.7 3.9 8.5E-05 42.9 1.7 79 337-416 87-169 (285)
152 PF03880 DbpA: DbpA RNA bindin 62.0 24 0.00053 29.2 5.9 68 340-412 2-74 (74)
153 KOG1677 CCCH-type Zn-finger pr 61.8 3.5 7.5E-05 43.4 0.9 25 181-205 130-156 (332)
154 KOG2891 Surface glycoprotein [ 60.6 30 0.00064 36.4 7.3 37 335-372 146-194 (445)
155 KOG1040 Polyadenylation factor 58.4 3.7 8E-05 43.9 0.4 26 180-205 131-156 (325)
156 PF11767 SET_assoc: Histone ly 57.5 67 0.0015 26.6 7.6 56 349-409 10-65 (66)
157 KOG2591 c-Mpl binding protein, 56.7 18 0.0004 41.1 5.4 70 337-409 173-246 (684)
158 COG5152 Uncharacterized conser 53.5 5.1 0.00011 40.0 0.4 24 182-205 140-164 (259)
159 PF12872 OST-HTH: OST-HTH/LOTU 53.1 17 0.00036 29.5 3.4 67 234-311 3-72 (74)
160 KOG1040 Polyadenylation factor 46.5 8.3 0.00018 41.3 0.8 26 180-205 74-99 (325)
161 KOG4574 RNA-binding protein (c 44.9 15 0.00033 43.6 2.5 77 336-415 296-374 (1007)
162 KOG1492 C3H1-type Zn-finger pr 43.3 9.2 0.0002 38.8 0.5 20 185-205 263-282 (377)
163 PF07576 BRAP2: BRCA1-associat 41.5 1.4E+02 0.003 27.2 7.7 64 339-403 14-80 (110)
164 PF15513 DUF4651: Domain of un 40.6 40 0.00087 27.8 3.7 19 354-372 9-27 (62)
165 KOG2494 C3H1-type Zn-finger pr 38.3 15 0.00032 39.3 1.1 23 182-205 70-92 (331)
166 KOG4454 RNA binding protein (R 33.7 8.4 0.00018 39.2 -1.5 56 346-401 91-149 (267)
167 COG5252 Uncharacterized conser 33.1 15 0.00032 37.8 0.1 21 185-205 87-107 (299)
168 COG5084 YTH1 Cleavage and poly 33.0 20 0.00044 37.7 1.1 23 183-205 104-126 (285)
169 PF02714 DUF221: Domain of unk 32.5 36 0.00077 35.5 2.8 39 380-420 1-39 (325)
170 KOG2318 Uncharacterized conser 32.1 1.3E+02 0.0027 34.9 7.0 72 335-407 171-298 (650)
171 COG5063 CTH1 CCCH-type Zn-fing 29.7 24 0.00052 37.5 1.0 27 179-205 270-297 (351)
172 KOG1813 Predicted E3 ubiquitin 28.1 21 0.00045 37.8 0.1 25 181-205 184-209 (313)
173 KOG3088 Secretory carrier memb 24.8 1E+02 0.0023 32.7 4.5 26 464-489 78-103 (313)
174 KOG0149 Predicted RNA-binding 22.7 27 0.00059 35.9 -0.1 30 262-293 32-62 (247)
175 PF07292 NID: Nmi/IFP 35 domai 22.5 1.1E+02 0.0024 26.8 3.6 34 380-413 1-37 (88)
176 KOG4410 5-formyltetrahydrofola 21.6 1.3E+02 0.0027 32.1 4.4 50 337-388 329-378 (396)
177 KOG1039 Predicted E3 ubiquitin 21.1 44 0.00095 36.2 1.0 26 180-205 246-273 (344)
178 PHA02887 EGF-like protein; Pro 20.1 43 0.00094 31.0 0.6 22 183-205 83-104 (126)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.61 E-value=3.9e-15 Score=139.09 Aligned_cols=83 Identities=17% Similarity=0.314 Sum_probs=76.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
...+++|||+| |++++||++|+++|++||+|.+|+|+. +++||||||+|.+.++|++|++.+|++.|+|+.|+|+
T Consensus 31 ~~~~~~lfVgn-L~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGG-LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeC-CCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34578999999 999999999999999999999999983 7899999999999999999999999999999999999
Q ss_pred ecccCcch
Q 008448 411 PYREKSKL 418 (565)
Q Consensus 411 ~A~~K~k~ 418 (565)
++.++...
T Consensus 110 ~a~~~~~~ 117 (144)
T PLN03134 110 PANDRPSA 117 (144)
T ss_pred eCCcCCCC
Confidence 99877553
No 2
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=7.6e-16 Score=162.03 Aligned_cols=152 Identities=22% Similarity=0.360 Sum_probs=114.2
Q ss_pred HHHhhhhhhhcCcccchhccccCCCchHHHHHHHhhcccccccCCCCchhhHhhhccc---ccccCCCCCCCCCCCCCCc
Q 008448 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAP---KYLENRNERSDPGPIVTGS 338 (565)
Q Consensus 262 yfe~~g~~Lq~~~~~~esqR~gkaGy~~~klla~lqn~i~~idr~~gq~~v~l~eda~---k~~~~r~~r~d~~~~~~~~ 338 (565)
+||+||.+.+.+..+.++++ ..+||+|+++..+. ...+.+..-|.+..+- +...+ ||.+...+| ....
T Consensus 54 lFe~yg~V~einl~kDk~t~-~s~gcCFv~~~trk-~a~~a~~Alhn~ktlp-G~~~pvqvk~Ad~E~er------~~~e 124 (510)
T KOG0144|consen 54 LFEKYGNVYEINLIKDKSTG-QSKGCCFVKYYTRK-EADEAINALHNQKTLP-GMHHPVQVKYADGERER------IVEE 124 (510)
T ss_pred HHHHhCceeEEEeecccccC-cccceEEEEeccHH-HHHHHHHHhhcccccC-CCCcceeecccchhhhc------cccc
Confidence 78999999998866666555 33499999988776 4455555444443321 11111 222211111 1456
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCc---eeeeeEEEEEec
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPH---FVCGARVLVKPY 412 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~---~i~Gr~V~Vk~A 412 (565)
+|||||- |+..+||.+|+++|++||.|++|+|++ +.+||||||+|.+.|.|..|++.||+. +-|..++.|+||
T Consensus 125 ~KLFvg~-lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 125 RKLFVGM-LSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred hhhhhhh-ccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 8999999 999999999999999999999999996 889999999999999999999999853 346689999999
Q ss_pred ccCcchhhhHh
Q 008448 413 REKSKLVDRKY 423 (565)
Q Consensus 413 ~~K~k~~~k~~ 423 (565)
.+++.+..++.
T Consensus 204 Dtqkdk~~~~l 214 (510)
T KOG0144|consen 204 DTQKDKDGKRL 214 (510)
T ss_pred ccCCCchHHHH
Confidence 98877766654
No 3
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=2.1e-14 Score=141.82 Aligned_cols=75 Identities=15% Similarity=0.273 Sum_probs=70.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
...|||||+ |+|.++.+.|++||++||+|+++.|++ |++||||||||.+.+.|.+|++.. ...|+||+..|+.|
T Consensus 11 ~~TKifVgg-L~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGG-LAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcC-cccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 458999999 999999999999999999999999995 999999999999999999999997 68899999999876
Q ss_pred c
Q 008448 413 R 413 (565)
Q Consensus 413 ~ 413 (565)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 4
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.48 E-value=1.7e-13 Score=142.80 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=75.2
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
...+|||+| |++++++++|+++|++||+|++|+|++ +++||||||+|.+.++|.+|+..||+..|+||.|.|.++
T Consensus 268 ~~~~lfV~N-L~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 268 AGYCIFVYN-LSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCcEEEEeC-CCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 345799999 999999999999999999999999994 789999999999999999999999999999999999999
Q ss_pred ccCcc
Q 008448 413 REKSK 417 (565)
Q Consensus 413 ~~K~k 417 (565)
..|.+
T Consensus 347 ~~~~~ 351 (352)
T TIGR01661 347 TNKAY 351 (352)
T ss_pred cCCCC
Confidence 88764
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.44 E-value=3.8e-13 Score=140.16 Aligned_cols=79 Identities=15% Similarity=0.313 Sum_probs=74.6
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
..+|||+| ||.++||++|+++|++||+|.+|+|+. |++||||||+|.+.++|++|++.+|+..|.|+.|.|.+++
T Consensus 3 ~~~l~V~n-Lp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNY-LPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeC-CCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 57999999 999999999999999999999999984 7899999999999999999999999999999999999998
Q ss_pred cCcc
Q 008448 414 EKSK 417 (565)
Q Consensus 414 ~K~k 417 (565)
++..
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 7654
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.44 E-value=2.9e-13 Score=151.50 Aligned_cols=79 Identities=15% Similarity=0.314 Sum_probs=74.2
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..++|||+| |+.++++++|+++|+.||+|.+|+|++ +++||||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 203 ~~~rLfVgn-Lp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVAS-VHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeec-CCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 457999999 999999999999999999999999985 679999999999999999999999999999999999999
Q ss_pred ccCc
Q 008448 413 REKS 416 (565)
Q Consensus 413 ~~K~ 416 (565)
..+.
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 8644
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=4e-13 Score=107.00 Aligned_cols=67 Identities=18% Similarity=0.473 Sum_probs=64.1
Q ss_pred EEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEE
Q 008448 341 IYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (565)
Q Consensus 341 IfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~ 408 (565)
|||+| ||.++|+++|+++|++||.|..+.++. ++.+|||||+|.+.++|++|++.+|++.++|+.|+
T Consensus 1 l~v~n-lp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGN-LPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEES-ETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcC-CCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999 999999999999999999999999986 67899999999999999999999999999999885
No 8
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.5e-13 Score=139.31 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=75.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec--CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC--QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~--gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
....++|+|.| +|+.+.|.||+..|++||+|.+|.|++ .-+||||||||++.++|++|-+++++..|.||+|+|+.|
T Consensus 93 ~~~pkRLhVSN-IPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSN-IPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeec-CCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 34568999999 999999999999999999999999997 348999999999999999999999999999999999999
Q ss_pred ccCc
Q 008448 413 REKS 416 (565)
Q Consensus 413 ~~K~ 416 (565)
..+-
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 9874
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.43 E-value=2.2e-13 Score=144.13 Aligned_cols=82 Identities=22% Similarity=0.303 Sum_probs=74.5
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeee--eEEEEE
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCG--ARVLVK 410 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~G--r~V~Vk 410 (565)
..++|||+| |++.+||++|+++|++||.|+.|+|+. +++||||||+|.+.++|++|++.+|++.+.| +.|.|+
T Consensus 192 ~~~~lfV~n-Lp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTN-LPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred ccceeEEeC-CCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 457899999 999999999999999999999999984 7789999999999999999999999998876 789999
Q ss_pred ecccCcchh
Q 008448 411 PYREKSKLV 419 (565)
Q Consensus 411 ~A~~K~k~~ 419 (565)
++.++.+..
T Consensus 271 ~a~~~~~~~ 279 (346)
T TIGR01659 271 LAEEHGKAK 279 (346)
T ss_pred ECCcccccc
Confidence 998775543
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.37 E-value=1.5e-12 Score=137.86 Aligned_cols=81 Identities=20% Similarity=0.285 Sum_probs=75.2
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....++|||++ |++++||++|+++|++||+|++|+|+ ++++||||||+|.++++|++|++.+|+..|.+++|+|.
T Consensus 104 ~~~~~~LfVgn-Lp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNY-LPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34678999999 99999999999999999999999997 37899999999999999999999999999999999999
Q ss_pred ecccCc
Q 008448 411 PYREKS 416 (565)
Q Consensus 411 ~A~~K~ 416 (565)
++++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 987643
No 11
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.6e-12 Score=130.69 Aligned_cols=141 Identities=21% Similarity=0.359 Sum_probs=102.7
Q ss_pred HHHhhhhhhhcCcccchhccccCC-CchHHHHHHHhhcccccccCCCCchhhHhhhcccccccCCCCCCC----------
Q 008448 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSD---------- 330 (565)
Q Consensus 262 yfe~~g~~Lq~~~~~~esqR~gka-Gy~~~klla~lqn~i~~idr~~gq~~v~l~eda~k~~~~r~~r~d---------- 330 (565)
-|.+||++-.+.. .+....+|+ ||+|+.+-.+. +..+.|+.=.| ++++.|.-|.-
T Consensus 82 aF~pFGevS~akv--irD~~T~KsKGYgFVSf~~k~-dAEnAI~~MnG-----------qWlG~R~IRTNWATRKp~e~n 147 (321)
T KOG0148|consen 82 AFAPFGEVSDAKV--IRDMNTGKSKGYGFVSFPNKE-DAENAIQQMNG-----------QWLGRRTIRTNWATRKPSEMN 147 (321)
T ss_pred HhccccccccceE--eecccCCcccceeEEeccchH-HHHHHHHHhCC-----------eeeccceeeccccccCccccC
Confidence 3567887766542 222233555 99999877665 33333332222 22222221111
Q ss_pred ---------CCCCCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCce
Q 008448 331 ---------PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHF 401 (565)
Q Consensus 331 ---------~~~~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~ 401 (565)
+....+...++|||| +..-+||+++|+.|++||+|.+|||.. -+||+||.|++.|.|..||..+|+..
T Consensus 148 ~~~ltfdeV~NQssp~NtsVY~G~-I~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNnte 224 (321)
T KOG0148|consen 148 GKPLTFDEVYNQSSPDNTSVYVGN-IASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTE 224 (321)
T ss_pred CCCccHHHHhccCCCCCceEEeCC-cCccccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCce
Confidence 122345679999999 888999999999999999999999987 68999999999999999999999999
Q ss_pred eeeeEEEEEecccCcchh
Q 008448 402 VCGARVLVKPYREKSKLV 419 (565)
Q Consensus 402 i~Gr~V~Vk~A~~K~k~~ 419 (565)
|.|..|+|.|-++-....
T Consensus 225 i~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 225 IGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred eCceEEEEeccccCCCCC
Confidence 999999999998765443
No 12
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.36 E-value=2.5e-12 Score=130.23 Aligned_cols=76 Identities=17% Similarity=0.318 Sum_probs=70.4
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
.++||||| |++.+||++|+++|+.||+|++|+|+. +..+|||||+|.++++|+.|+. +|+..|+|+.|.|.++..-
T Consensus 4 ~rtVfVgN-Ls~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSN-VSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 57999999 999999999999999999999999997 4468999999999999999995 8999999999999998643
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.35 E-value=8.7e-13 Score=146.81 Aligned_cols=84 Identities=17% Similarity=0.338 Sum_probs=77.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
....+|||+| |++++|+++|+++|++||.|++|+|+. +++||||||+|.+.++|.+|+..+|+..++|+.|.|.+|
T Consensus 283 ~~~~~l~V~n-l~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKN-LDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeC-CCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 3457899999 999999999999999999999999984 789999999999999999999999999999999999999
Q ss_pred ccCcchhh
Q 008448 413 REKSKLVD 420 (565)
Q Consensus 413 ~~K~k~~~ 420 (565)
..|.....
T Consensus 362 ~~k~~~~~ 369 (562)
T TIGR01628 362 QRKEQRRA 369 (562)
T ss_pred cCcHHHHH
Confidence 98765543
No 14
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=3e-12 Score=132.39 Aligned_cols=76 Identities=25% Similarity=0.407 Sum_probs=69.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHcc-CCceeeeeEEEEEecccC
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG-NPHFVCGARVLVKPYREK 415 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~l-N~~~i~Gr~V~Vk~A~~K 415 (565)
..++||||+ |...++|.+|+++|.+||+|..+++.. .+|+|||+|.+.+.|+.|.++. |...|+|++|.|.|..++
T Consensus 227 ~I~tLyIg~-l~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 227 SIKTLYIGG-LNDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRPK 303 (377)
T ss_pred ceeEEEecc-cccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCCc
Confidence 568999999 999999999999999999999999998 5679999999999999888754 678899999999999883
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.33 E-value=1.9e-12 Score=139.93 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=73.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
+..++|||+| |+..+|+++|+++|++||.|..|.|+. |+++|||||+|.+.++|.+|+..+|+..|.|+.|.|.+
T Consensus 184 p~~~~l~v~n-l~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVGN-LHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEcC-CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 4478999999 999999999999999999999999994 68899999999999999999999999999999999999
Q ss_pred cccC
Q 008448 412 YREK 415 (565)
Q Consensus 412 A~~K 415 (565)
+...
T Consensus 263 a~~~ 266 (457)
T TIGR01622 263 AQDS 266 (457)
T ss_pred ccCC
Confidence 8743
No 16
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.1e-12 Score=128.64 Aligned_cols=80 Identities=25% Similarity=0.412 Sum_probs=76.0
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..++||||+ |..++||.-|...|-+||.|.+|.|+. +++||||||+|+-.|+|.+|+..||..+++||.|+|+.|
T Consensus 9 ~KrtlYVGG-ladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGG-LADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEecc-chHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 568999999 999999999999999999999999993 899999999999999999999999999999999999999
Q ss_pred ccCcc
Q 008448 413 REKSK 417 (565)
Q Consensus 413 ~~K~k 417 (565)
+|.+-
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 98654
No 17
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=7.6e-12 Score=127.27 Aligned_cols=93 Identities=17% Similarity=0.330 Sum_probs=83.3
Q ss_pred CCCCCCCCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceee
Q 008448 328 RSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVC 403 (565)
Q Consensus 328 r~d~~~~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~ 403 (565)
..|..+.+.+-+||||+. |+++++|..|+..|+.||+|..|+|+. |+++|||||+|+++.+..+|.+..++..|+
T Consensus 91 ~~dp~a~gDPy~TLFv~R-LnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id 169 (335)
T KOG0113|consen 91 NNDPNAIGDPYKTLFVAR-LNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID 169 (335)
T ss_pred CCCCcccCCccceeeeee-ccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec
Confidence 345566777889999999 999999999999999999999999994 999999999999999999999999999999
Q ss_pred eeEEEEEecccCcchhhh
Q 008448 404 GARVLVKPYREKSKLVDR 421 (565)
Q Consensus 404 Gr~V~Vk~A~~K~k~~~k 421 (565)
|+.|.|..-..+....|.
T Consensus 170 grri~VDvERgRTvkgW~ 187 (335)
T KOG0113|consen 170 GRRILVDVERGRTVKGWL 187 (335)
T ss_pred CcEEEEEecccccccccc
Confidence 999999887766655543
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.28 E-value=1.1e-11 Score=100.15 Aligned_cols=67 Identities=33% Similarity=0.560 Sum_probs=61.0
Q ss_pred EEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEE
Q 008448 341 IYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (565)
Q Consensus 341 IfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~ 408 (565)
|||+| ||+.+++++|+++|+.||.|..|++.. ++.+|+|||+|.+.++|++|+...+++.++|+.|+
T Consensus 1 v~i~n-lp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISN-LPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEES-STTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeC-CCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999 999999999999999999999999996 34689999999999999999999988999999885
No 19
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.1e-11 Score=118.20 Aligned_cols=79 Identities=22% Similarity=0.420 Sum_probs=73.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccCc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K~ 416 (565)
..++||||| |+..+++.+|+..|..||+|..|.|.. ...|||||+|+++.+|+.|+..||+..|||.+|.|....-+.
T Consensus 9 ~~~kVYVGn-L~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGN-LGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEecc-CCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 467999999 999999999999999999999999987 678999999999999999999999999999999999887654
Q ss_pred c
Q 008448 417 K 417 (565)
Q Consensus 417 k 417 (565)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 4
No 20
>PLN03213 repressor of silencing 3; Provisional
Probab=99.25 E-value=1.4e-11 Score=131.72 Aligned_cols=78 Identities=19% Similarity=0.357 Sum_probs=72.1
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCH--HHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASA--DTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~--e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
...+||||| |.+.+|+++|+..|+.||.|.+|.|++-..||||||+|... .++.+|++.+|+..+.||.|+|..|+|
T Consensus 9 ~gMRIYVGN-LSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGG-LGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 346999999 99999999999999999999999999744599999999987 789999999999999999999999986
Q ss_pred C
Q 008448 415 K 415 (565)
Q Consensus 415 K 415 (565)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 4
No 21
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.3e-11 Score=121.05 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=74.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
...+|-|.| |+.+++|++|+++|.+||.|..|.|. +|.+||||||+|.+.++|.+||+.+|++-+++--|.|.|+
T Consensus 188 D~~tvRvtN-Lsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTN-LSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEec-CccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 356899999 99999999999999999999999998 4999999999999999999999999999999999999999
Q ss_pred ccCc
Q 008448 413 REKS 416 (565)
Q Consensus 413 ~~K~ 416 (565)
+|+.
T Consensus 267 kP~~ 270 (270)
T KOG0122|consen 267 KPSN 270 (270)
T ss_pred CCCC
Confidence 9863
No 22
>smart00362 RRM_2 RNA recognition motif.
Probab=99.23 E-value=4.9e-11 Score=93.14 Aligned_cols=70 Identities=24% Similarity=0.493 Sum_probs=65.1
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec--CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC--QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 340 kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~--gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
+|||+| |+..+++++|+++|.+||+|..+.+.. +.++|+|||+|.+.+.|++|+..+++..+.|++|.|+
T Consensus 1 ~v~i~~-l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGN-LPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcC-CCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999 999999999999999999999999986 4478999999999999999999999999999999874
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.23 E-value=2.3e-11 Score=136.38 Aligned_cols=77 Identities=17% Similarity=0.394 Sum_probs=71.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..++||||| |+++++|++|+++|++||+|.+|+|+ ++++||||||+|.+.++|++|++.+|+..|+||.|+|.+.
T Consensus 106 ~~~rLfVGn-Lp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGS-ISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcC-CCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 457899999 99999999999999999999999998 3889999999999999999999999999999999999865
Q ss_pred cc
Q 008448 413 RE 414 (565)
Q Consensus 413 ~~ 414 (565)
..
T Consensus 185 ~~ 186 (612)
T TIGR01645 185 SN 186 (612)
T ss_pred cc
Confidence 43
No 24
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.22 E-value=4.9e-11 Score=119.46 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=70.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
...+|||+| |++.+||++|+++|+.||+|.+|+|+. ++.+|||||+|.+++.|+.|+ .+|+..|.++.|.|..+..
T Consensus 4 ~g~TV~V~N-LS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTN-LSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEec-CCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 457999999 999999999999999999999999997 667899999999999999999 5699999999999988754
No 25
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.21 E-value=9.6e-12 Score=129.51 Aligned_cols=151 Identities=25% Similarity=0.393 Sum_probs=105.4
Q ss_pred HHHhhhhhhhcCcccchhccccCC-CchHHHHHHHhhcccccccCCCCchhhHhhhcccccccCCCCCCCCCCCCCCcce
Q 008448 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQ 340 (565)
Q Consensus 262 yfe~~g~~Lq~~~~~~esqR~gka-Gy~~~klla~lqn~i~~idr~~gq~~v~l~eda~k~~~~r~~r~d~~~~~~~~~k 340 (565)
||..||.++.+-....... +++ ||+|+.+....--.-.+..++|--....+.... .+ .|.+...... ....++
T Consensus 26 yf~~~Gev~d~~vm~d~~t--~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~--av-~r~~~~~~~~-~~~tkk 99 (311)
T KOG4205|consen 26 YFSQFGEVTDCVVMRDPST--GRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKR--AV-SREDQTKVGR-HLRTKK 99 (311)
T ss_pred HhcccCceeeEEEeccCCC--CCcccccceecCCCcchheeecccccccCCcccccee--cc-Cccccccccc-ccceeE
Confidence 7778888888765444433 545 898887653321112233333322222221111 01 1222222111 125689
Q ss_pred EEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccCc
Q 008448 341 IYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (565)
Q Consensus 341 IfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K~ 416 (565)
||||+ |+.+++|+++++||.+||.|.++.+++ ++.||||||+|.+++.+++++... .|.|+|+.|.|+.|.||.
T Consensus 100 iFvGG-~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~-f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 100 IFVGG-LPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQK-FHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred EEecC-cCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccc-eeeecCceeeEeeccchh
Confidence 99999 999999999999999999999999994 789999999999999999999885 999999999999999987
Q ss_pred chhh
Q 008448 417 KLVD 420 (565)
Q Consensus 417 k~~~ 420 (565)
....
T Consensus 178 ~~~~ 181 (311)
T KOG4205|consen 178 VMQS 181 (311)
T ss_pred hccc
Confidence 6653
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=3e-11 Score=121.65 Aligned_cols=79 Identities=13% Similarity=0.300 Sum_probs=75.3
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
--.+|||. |...++-++||+.|.+||+|.+++|++ +|+||||||.|-+.++|+.||..||+.+|++|.|+-+||.
T Consensus 62 hfhvfvgd-ls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGD-LSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehh-cchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 45799999 999999999999999999999999994 9999999999999999999999999999999999999999
Q ss_pred cCcc
Q 008448 414 EKSK 417 (565)
Q Consensus 414 ~K~k 417 (565)
.|..
T Consensus 141 RKp~ 144 (321)
T KOG0148|consen 141 RKPS 144 (321)
T ss_pred cCcc
Confidence 8873
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.16 E-value=1.4e-10 Score=127.02 Aligned_cols=78 Identities=12% Similarity=0.207 Sum_probs=73.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..++||||| |++.+|+++|+++|++||.|..+.|+. |+++|||||+|.+.++|..|++.+|+..|+|+.|.|.++
T Consensus 294 ~~~~l~v~n-lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 294 SKDRIYIGN-LPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 458999999 999999999999999999999999984 789999999999999999999999999999999999998
Q ss_pred ccC
Q 008448 413 REK 415 (565)
Q Consensus 413 ~~K 415 (565)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 654
No 28
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=1.2e-10 Score=111.89 Aligned_cols=76 Identities=24% Similarity=0.414 Sum_probs=72.3
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
..+||||| |++++|+++|+++|.+||.|..|+|+. ++++|||||+|.+.++|..|+..+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~n-L~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGN-LPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeC-CCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 68999999 999999999999999999999999974 7899999999999999999999999999999999999976
Q ss_pred c
Q 008448 414 E 414 (565)
Q Consensus 414 ~ 414 (565)
+
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.15 E-value=9.4e-11 Score=130.61 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=70.4
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 340 kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
.||||| |+.++||++|+++|++||+|.+|+|.. ++++|||||+|.+.++|++|++.+|...|.|+.|+|.|+..
T Consensus 2 sl~Vgn-Lp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGD-LDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 699999 999999999999999999999999984 78899999999999999999999999999999999999864
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.14 E-value=1.5e-10 Score=129.46 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=72.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcC--CCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTY--GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~f--G~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
...++|||+| |++.+||++|+++|++| |.|++|+++ ++||||+|.+.++|++|++.+|+..|+|+.|+|.+++
T Consensus 231 ~~~k~LfVgN-L~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRN-LMTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeC-CCCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 3457999999 99999999999999999 999999876 5799999999999999999999999999999999999
Q ss_pred cCcch
Q 008448 414 EKSKL 418 (565)
Q Consensus 414 ~K~k~ 418 (565)
++.+.
T Consensus 306 p~~~~ 310 (578)
T TIGR01648 306 PVDKK 310 (578)
T ss_pred CCCcc
Confidence 86544
No 31
>smart00360 RRM RNA recognition motif.
Probab=99.14 E-value=1.5e-10 Score=89.83 Aligned_cols=67 Identities=24% Similarity=0.396 Sum_probs=61.5
Q ss_pred EeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 343 LTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 343 Vgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
|++ |+..+++++|+++|.+||+|..+.|.. ++++|||||+|.+.++|.+|+..+++..++|+.|.|.
T Consensus 1 i~~-l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGN-LPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCC-CCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 467 899999999999999999999999985 4568999999999999999999999999999999873
No 32
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.12 E-value=2e-10 Score=126.34 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=70.5
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHc--cCCceeeeeEEEEEeccc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAK--GNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~--lN~~~i~Gr~V~Vk~A~~ 414 (565)
++++|||+| |++++||++|+++|++||+|.+|.|+. .||||||+|.+.++|++|++. +|+..|+|+.|.|.++..
T Consensus 1 ps~vv~V~n-Lp~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRN-LPQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcC-CCCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 368999999 999999999999999999999999997 679999999999999999986 478999999999999975
Q ss_pred C
Q 008448 415 K 415 (565)
Q Consensus 415 K 415 (565)
+
T Consensus 78 ~ 78 (481)
T TIGR01649 78 Q 78 (481)
T ss_pred c
Confidence 5
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.10 E-value=1.9e-10 Score=128.72 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=70.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceee-eeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVC-GARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~-Gr~V~Vk~A 412 (565)
...+|||+| |+++++|++|+++|++||+|.+|+|+. +++||||||+|.+.++|++|++.+|+..|. |+.|.|.++
T Consensus 57 ~~~~lFVgn-Lp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGK-IPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCC-CCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 458999999 999999999999999999999999984 889999999999999999999999998885 788877766
Q ss_pred cc
Q 008448 413 RE 414 (565)
Q Consensus 413 ~~ 414 (565)
.+
T Consensus 136 ~~ 137 (578)
T TIGR01648 136 VD 137 (578)
T ss_pred cc
Confidence 53
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.10 E-value=3.7e-10 Score=122.24 Aligned_cols=77 Identities=19% Similarity=0.347 Sum_probs=71.1
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..++|||+| |+..+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++||. +++..+.|+.|.|..+
T Consensus 88 ~~~~l~V~n-lp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 88 DDRTVFVLQ-LALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred CCcEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 468999999 999999999999999999999999984 7889999999999999999997 6899999999999886
Q ss_pred ccC
Q 008448 413 REK 415 (565)
Q Consensus 413 ~~K 415 (565)
...
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 543
No 35
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.09 E-value=3.5e-10 Score=124.39 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=72.6
Q ss_pred CCcceEEEeCCCCC-CCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 336 TGSRQIYLTFPAES-TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 336 ~~~~kIfVgn~L~~-~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
+.+.+|||+| |++ .+|+++|+++|++||.|.+|+|+.. ++|||||+|.+.++|.+|+..||++.|.|+.|+|.+++.
T Consensus 273 ~~~~~l~v~n-L~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSG-LHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeC-CCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4568999999 997 6999999999999999999999975 479999999999999999999999999999999999865
Q ss_pred Cc
Q 008448 415 KS 416 (565)
Q Consensus 415 K~ 416 (565)
+.
T Consensus 351 ~~ 352 (481)
T TIGR01649 351 QN 352 (481)
T ss_pred cc
Confidence 53
No 36
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.09 E-value=6.3e-10 Score=87.29 Aligned_cols=71 Identities=24% Similarity=0.406 Sum_probs=65.7
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecC---CCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 340 kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~g---k~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
+|||++ |+..+++++|+++|..||+|..+.+... +.+|+|||+|.+.+.|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~-l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGN-LPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeC-CCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 589999 9999999999999999999999999963 4589999999999999999999999999999999864
No 37
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.08 E-value=1.8e-10 Score=112.44 Aligned_cols=77 Identities=27% Similarity=0.377 Sum_probs=72.2
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
.....|-|-| |.+.+|.++|+.+|++||.|-+|.|+. +.++|||||-|.+..+|+.|++.|++..++|+.|.|..
T Consensus 11 ~gm~SLkVdN-LTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDN-LTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecc-eeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 3457899999 999999999999999999999999993 78999999999999999999999999999999999987
Q ss_pred cc
Q 008448 412 YR 413 (565)
Q Consensus 412 A~ 413 (565)
|+
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 76
No 38
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=1.4e-10 Score=123.15 Aligned_cols=82 Identities=22% Similarity=0.371 Sum_probs=74.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
....+-|||.| |..++|||.|++.|.+||.|+.|..+ |-||||.|.+.++|-+|++.+|+..|+|..|.|..|+|
T Consensus 256 ms~VKvLYVRN-L~~~tTeE~lk~~F~~~G~veRVkk~----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 256 MSKVKVLYVRN-LMESTTEETLKKLFNEFGKVERVKKP----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred hhheeeeeeec-cchhhhHHHHHHHHHhccceEEeecc----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 34558899999 99999999999999999999999876 56999999999999999999999999999999999998
Q ss_pred Ccchhhh
Q 008448 415 KSKLVDR 421 (565)
Q Consensus 415 K~k~~~k 421 (565)
-.+....
T Consensus 331 ~~k~k~~ 337 (506)
T KOG0117|consen 331 VDKKKKE 337 (506)
T ss_pred hhhhccc
Confidence 7655433
No 39
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=6.4e-10 Score=86.74 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=51.3
Q ss_pred HHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 356 VSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 356 Lr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
|+++|++||+|.+|.+...+ +++|||+|.+.++|++|++.+|+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998744 699999999999999999999999999999999885
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.00 E-value=5.2e-10 Score=107.39 Aligned_cols=76 Identities=20% Similarity=0.334 Sum_probs=72.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
...|||||| |+..++++.|.++|-+.|+|.+++|+. +.++|||||+|.++|+|+-|++-+|...+.||+|+|+.+
T Consensus 8 qd~tiyvgn-ld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGN-LDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEec-CCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 457999999 999999999999999999999999994 789999999999999999999999999999999999998
Q ss_pred c
Q 008448 413 R 413 (565)
Q Consensus 413 ~ 413 (565)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 41
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=7.7e-10 Score=119.95 Aligned_cols=82 Identities=22% Similarity=0.257 Sum_probs=76.5
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
.-+|.|.| |||.+.+++|+.+|+.||.|.+|.||+ |+-.|||||+|....+|..|++.+|++.|+||.|-|.||.+
T Consensus 117 k~rLIIRN-LPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRN-LPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeec-CCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 45899999 999999999999999999999999996 66779999999999999999999999999999999999999
Q ss_pred Ccchhh
Q 008448 415 KSKLVD 420 (565)
Q Consensus 415 K~k~~~ 420 (565)
|.....
T Consensus 196 Kd~ye~ 201 (678)
T KOG0127|consen 196 KDTYED 201 (678)
T ss_pred cccccc
Confidence 876554
No 42
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=9e-11 Score=112.55 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=71.2
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
.+.-||||+ |++++||.||-..|++||.|++|.++ ||+++||||+.|++...--.|+..+|+..|.||.|+|...
T Consensus 34 dsA~Iyigg-l~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGG-LPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECC-CcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 456799999 99999999999999999999999999 4999999999999999999999999999999999999764
Q ss_pred c
Q 008448 413 R 413 (565)
Q Consensus 413 ~ 413 (565)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 43
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=1.2e-09 Score=116.22 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=72.2
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCcee-eeeEEE
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFV-CGARVL 408 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i-~Gr~V~ 408 (565)
..+...-||||. ||.++.|++|..+|++-|+|-++|||. |.+||||||||.+.+.|+.|++.+|+++| .|+.|.
T Consensus 79 ~p~~G~EVfvGk-IPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 79 PPPRGCEVFVGK-IPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCceEEecC-CCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 346778999999 999999999999999999999999995 89999999999999999999999999988 588888
Q ss_pred EEecc
Q 008448 409 VKPYR 413 (565)
Q Consensus 409 Vk~A~ 413 (565)
|....
T Consensus 158 vc~Sv 162 (506)
T KOG0117|consen 158 VCVSV 162 (506)
T ss_pred EEEee
Confidence 87654
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.95 E-value=1.9e-09 Score=116.92 Aligned_cols=78 Identities=18% Similarity=0.295 Sum_probs=74.4
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
..||||| ++++++|++|..+|+..|.|.++++++ |+.|||||++|.+.+++++|++.+|+..+.||+|+|.++..
T Consensus 19 ~~v~vgn-ip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGN-IPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecC-CCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999 999999999999999999999999995 99999999999999999999999999999999999999876
Q ss_pred Ccc
Q 008448 415 KSK 417 (565)
Q Consensus 415 K~k 417 (565)
...
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 544
No 45
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=7.1e-09 Score=91.75 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=72.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
..+-|||.| ||+++|.|+.-++|++||+|..|+|=. ..-||-|||.|++..+|++|++.+++..++++-+.|-.+.+.
T Consensus 17 vnriLyirN-Lp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 17 VNRILYIRN-LPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hheeEEEec-CCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 567899999 999999999999999999999999974 567999999999999999999999999999999999887764
No 46
>smart00361 RRM_1 RNA recognition motif.
Probab=98.90 E-value=3.9e-09 Score=86.47 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=51.5
Q ss_pred HHHHHHHhh----cCCCeeEEE-ee----c--CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 353 EDDVSNYFN----TYGPVDDVR-IP----C--QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 353 EedLr~~Fs----~fG~V~~V~-I~----~--gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
+++|+++|+ +||+|.+|. |+ + +++||||||+|.+.++|.+|+..+|+..++||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999985 33 2 778999999999999999999999999999999976
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.90 E-value=8.8e-10 Score=114.99 Aligned_cols=81 Identities=27% Similarity=0.408 Sum_probs=74.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
...|||||+ |+|+++++.|++||++||+|.+|.++. +++|||+||+|.+++.+.+++... .|.|+||.|.++.|
T Consensus 5 ~~~KlfiGg-isw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~-~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGG-LSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNAR-THKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecC-cCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccc-ccccCCccccceec
Confidence 457999999 999999999999999999999999994 899999999999999999999885 89999999999999
Q ss_pred ccCcchh
Q 008448 413 REKSKLV 419 (565)
Q Consensus 413 ~~K~k~~ 419 (565)
.++....
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 9886443
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=1e-09 Score=114.29 Aligned_cols=72 Identities=18% Similarity=0.460 Sum_probs=68.9
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
.+||||. +.+.+.|+.||..|..||+|.+|.+. ++++||||||+|+-+|.|+.|++.||+..++||.|+|..
T Consensus 114 cRvYVGS-IsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGS-ISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred Hheeeee-eEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 4799999 99999999999999999999999987 599999999999999999999999999999999999984
No 49
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=2.9e-09 Score=97.37 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=69.0
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
.+.|||||| |++.+|||+|.++|++.|+|..|.|= +...-||+||.|-..++|+.|+.-+|+..++.|.|.|.|-
T Consensus 35 ~S~tvyVgN-lSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGN-LSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEee-eeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 567999999 99999999999999999999998543 2456799999999999999999999999999999999885
Q ss_pred c
Q 008448 413 R 413 (565)
Q Consensus 413 ~ 413 (565)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=2.8e-09 Score=102.72 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=71.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
.+++||||| ||.++.|.+|+++|.+||.|.+|.+.. -....||||.|+++.+|+.|+...|+..++|.+++|..+..-
T Consensus 5 ~~~~iyvGN-LP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGN-LPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecC-CCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 457999999 999999999999999999999999874 234679999999999999999999999999999999988654
Q ss_pred c
Q 008448 416 S 416 (565)
Q Consensus 416 ~ 416 (565)
.
T Consensus 84 r 84 (241)
T KOG0105|consen 84 R 84 (241)
T ss_pred C
Confidence 3
No 51
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.88 E-value=1.9e-09 Score=109.74 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=73.2
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccCcch
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K~k~ 418 (565)
.|+|||| |+..+++.+|+.+|++||+|.+|.|+. .||||..++...++.|+..+++..|+|..|.|+.++.|.+.
T Consensus 3 ~KLFIGN-Lp~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGN-LPREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccC-CCcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 4899999 999999999999999999999999985 59999999999999999999999999999999999988666
Q ss_pred hhhH
Q 008448 419 VDRK 422 (565)
Q Consensus 419 ~~k~ 422 (565)
..|.
T Consensus 78 stkl 81 (346)
T KOG0109|consen 78 STKL 81 (346)
T ss_pred cccc
Confidence 5443
No 52
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.86 E-value=2.2e-09 Score=116.68 Aligned_cols=80 Identities=23% Similarity=0.427 Sum_probs=74.8
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
.++|||| |.+++||++|+.+|+.||.|+.|.++ +|+++|||||+|.+.++|++|++.+|+.+|-||.|+|....+
T Consensus 279 ~rl~vgn-LHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 279 RRLYVGN-LHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhcc-cccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 3499999 99999999999999999999999998 499999999999999999999999999999999999999888
Q ss_pred Ccchh
Q 008448 415 KSKLV 419 (565)
Q Consensus 415 K~k~~ 419 (565)
+....
T Consensus 358 r~~~~ 362 (549)
T KOG0147|consen 358 RVDTK 362 (549)
T ss_pred ecccc
Confidence 76554
No 53
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.86 E-value=2.3e-09 Score=109.19 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=70.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
..+.||+||| +..++|.++||..|++||+|.+|.|+ |+|+||.|+..++|..|+..+|+.++.|++++|.....+
T Consensus 76 k~stkl~vgN-is~tctn~ElRa~fe~ygpviecdiv----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGN-ISPTCTNQELRAKFEKYGPVIECDIV----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCC-CCccccCHHHhhhhcccCCceeeeee----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 3568999999 99999999999999999999999997 479999999999999999999999999999999988765
Q ss_pred c
Q 008448 416 S 416 (565)
Q Consensus 416 ~ 416 (565)
-
T Consensus 151 l 151 (346)
T KOG0109|consen 151 L 151 (346)
T ss_pred c
Confidence 4
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=1.8e-08 Score=109.62 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=73.5
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHcc-----CC-ceeeeeEEE
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKG-----NP-HFVCGARVL 408 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~l-----N~-~~i~Gr~V~ 408 (565)
++|||.| |++++||++|.++|++||+|..+.|+ +++++|.|||.|.++.++..+|..- .+ ..|+||.|.
T Consensus 293 ~tVFvRN-L~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 293 KTVFVRN-LPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred ceEEEec-CCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 7999999 99999999999999999999999998 4999999999999999999999875 23 789999999
Q ss_pred EEecccCcchh
Q 008448 409 VKPYREKSKLV 419 (565)
Q Consensus 409 Vk~A~~K~k~~ 419 (565)
|..|..+....
T Consensus 372 v~~Av~RkeA~ 382 (678)
T KOG0127|consen 372 VTLAVTRKEAA 382 (678)
T ss_pred eeeccchHHHH
Confidence 99999887554
No 55
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=5.9e-09 Score=96.10 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=73.2
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
--|||++ +....||++|.+.|..||+|..+.+- +|..+|||.|.|++.+.|++|++.+|+..|-|..|.|.|+--
T Consensus 73 wIi~Vtg-vHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 73 WIIFVTG-VHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred EEEEEec-cCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 4699999 99999999999999999999999887 488999999999999999999999999999999999999876
Q ss_pred Ccch
Q 008448 415 KSKL 418 (565)
Q Consensus 415 K~k~ 418 (565)
+.+.
T Consensus 152 ~gp~ 155 (170)
T KOG0130|consen 152 KGPE 155 (170)
T ss_pred cCCc
Confidence 6543
No 56
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.77 E-value=2.1e-08 Score=109.94 Aligned_cols=74 Identities=18% Similarity=0.380 Sum_probs=63.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcC------------CCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceee
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTY------------GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC 403 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~f------------G~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~ 403 (565)
...++||||| |++.+|+++|+++|.+| +.|..+.+ ++.+|||||+|.+.++|..|| .+|+..|.
T Consensus 173 ~~~r~lyVgn-Lp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~--~~~kg~afVeF~~~e~A~~Al-~l~g~~~~ 248 (509)
T TIGR01642 173 RQARRLYVGG-IPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI--NKEKNFAFLEFRTVEEATFAM-ALDSIIYS 248 (509)
T ss_pred ccccEEEEeC-CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE--CCCCCEEEEEeCCHHHHhhhh-cCCCeEee
Confidence 4568999999 99999999999999975 35555555 447899999999999999999 58999999
Q ss_pred eeEEEEEecc
Q 008448 404 GARVLVKPYR 413 (565)
Q Consensus 404 Gr~V~Vk~A~ 413 (565)
|+.|+|....
T Consensus 249 g~~l~v~r~~ 258 (509)
T TIGR01642 249 NVFLKIRRPH 258 (509)
T ss_pred CceeEecCcc
Confidence 9999997544
No 57
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.77 E-value=3.8e-09 Score=101.52 Aligned_cols=82 Identities=16% Similarity=0.294 Sum_probs=73.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEE-Eee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDV-RIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V-~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
.+.+||||| |...++|..|.+.|+.||.+... .|+ +|+++|||||.|.+.|.+.+|++.+|+..+++|+|.|..
T Consensus 95 vganlfvgN-Ld~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 95 VGANLFVGN-LDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred ccccccccc-cCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 457999999 99999999999999999998763 333 389999999999999999999999999999999999999
Q ss_pred cccCcchh
Q 008448 412 YREKSKLV 419 (565)
Q Consensus 412 A~~K~k~~ 419 (565)
+..+....
T Consensus 174 a~k~~~kg 181 (203)
T KOG0131|consen 174 AFKKDTKG 181 (203)
T ss_pred EEecCCCc
Confidence 98776554
No 58
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=1.9e-08 Score=106.90 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=66.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCC-ceee--eeEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNP-HFVC--GARVL 408 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~-~~i~--Gr~V~ 408 (565)
...-|+|||- ++..++|.|||++|++||.|.+|.|++ +.++||+||+|.+.++|.+|+..++. ..|- ...|.
T Consensus 32 ~~~vKlfVgq-Iprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQ-IPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheecc-CCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3457999999 999999999999999999999999994 78999999999999999999988753 3343 35777
Q ss_pred EEecccC
Q 008448 409 VKPYREK 415 (565)
Q Consensus 409 Vk~A~~K 415 (565)
|++|...
T Consensus 111 vk~Ad~E 117 (510)
T KOG0144|consen 111 VKYADGE 117 (510)
T ss_pred ecccchh
Confidence 8777543
No 59
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.74 E-value=1.6e-08 Score=113.47 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=76.2
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccCc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K~ 416 (565)
.++|||||+ |+..++|.||+..|+.||+|.+|.++. +||+|||+.....+|.+|+.+|+.+.+.++.|+|.|+..+.
T Consensus 420 ~SrTLwvG~-i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGG-IPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeecc-ccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 569999999 999999999999999999999999987 89999999999999999999999999999999999999887
Q ss_pred chh
Q 008448 417 KLV 419 (565)
Q Consensus 417 k~~ 419 (565)
...
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 665
No 60
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=4.7e-08 Score=98.46 Aligned_cols=77 Identities=22% Similarity=0.257 Sum_probs=71.9
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
.-.|||=| |..+.+|.-|+.+|++||.|..|+|++ +++||||||+..+-++|..|+..+|+..+++|.+.|....
T Consensus 278 g~ciFvYN-Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 278 GWCIFVYN-LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred eeEEEEEe-cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 46899999 999999999999999999999999994 8999999999999999999999999999999999998765
Q ss_pred cC
Q 008448 414 EK 415 (565)
Q Consensus 414 ~K 415 (565)
.|
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 44
No 61
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=7.4e-08 Score=97.04 Aligned_cols=81 Identities=15% Similarity=0.288 Sum_probs=74.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
....|.|.- ||..+|+|++|.+|+.-|+|++|++++ |++-|||||.|.++++|++|+..+|+..+..+.|+|..|
T Consensus 40 skTNLIvNY-LPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 40 SKTNLIVNY-LPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred ccceeeeee-cccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 445677776 999999999999999999999999995 889999999999999999999999999999999999999
Q ss_pred ccCcch
Q 008448 413 REKSKL 418 (565)
Q Consensus 413 ~~K~k~ 418 (565)
+|....
T Consensus 119 RPSs~~ 124 (360)
T KOG0145|consen 119 RPSSDS 124 (360)
T ss_pred cCChhh
Confidence 987654
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=5.9e-08 Score=98.03 Aligned_cols=87 Identities=17% Similarity=0.307 Sum_probs=73.0
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCce-ee--eeEEEEE
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHF-VC--GARVLVK 410 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~-i~--Gr~V~Vk 410 (565)
..+|||||- |...-.|||||.+|..||+|++|.+.. |.+||+|||+|.+..+|+.||..+++.. +- ...+.||
T Consensus 18 ~drklfvgm-l~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGM-LNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhh-hcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 568999998 999999999999999999999999996 7899999999999999999999886432 22 3567888
Q ss_pred ecccCcchhhhHhh
Q 008448 411 PYREKSKLVDRKYQ 424 (565)
Q Consensus 411 ~A~~K~k~~~k~~~ 424 (565)
.+...+++..|+.+
T Consensus 97 ~ADTdkER~lRRMQ 110 (371)
T KOG0146|consen 97 FADTDKERTLRRMQ 110 (371)
T ss_pred eccchHHHHHHHHH
Confidence 88766655555444
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=9.2e-08 Score=102.40 Aligned_cols=76 Identities=16% Similarity=0.404 Sum_probs=71.2
Q ss_pred EEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec--CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccCcch
Q 008448 341 IYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC--QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418 (565)
Q Consensus 341 IfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~--gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K~k~ 418 (565)
|||-| |+.+++..+|.++|+.||+|.+|++++ .-++|| ||.|+++++|++|++.+|+..+.|+.|.|..+..+...
T Consensus 79 ~~i~n-l~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKN-LDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecC-CCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 99999 999999999999999999999999997 338999 99999999999999999999999999999988876554
No 64
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.58 E-value=1.2e-07 Score=94.04 Aligned_cols=84 Identities=14% Similarity=0.283 Sum_probs=77.1
Q ss_pred CcceEEEeCCCCCCCCHHHHHH----HhhcCCCeeEEEee-cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 337 GSRQIYLTFPAESTFTEDDVSN----YFNTYGPVDDVRIP-CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~----~Fs~fG~V~~V~I~-~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...||||.| |...+..++|++ +|++||.|.+|... +.+.||=|||+|.+.+.|-.|+..+++..+.|+.++|.+
T Consensus 8 pn~TlYInn-LnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYINN-LNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCceEeehh-ccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 344999999 999999999999 99999999999887 588999999999999999999999999999999999999
Q ss_pred cccCcchhhh
Q 008448 412 YREKSKLVDR 421 (565)
Q Consensus 412 A~~K~k~~~k 421 (565)
|+.+.....+
T Consensus 87 A~s~sdii~~ 96 (221)
T KOG4206|consen 87 AKSDSDIIAQ 96 (221)
T ss_pred ccCccchhhc
Confidence 9988766554
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.52 E-value=2.3e-07 Score=98.90 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=71.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhh-cCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFN-TYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs-~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...+.+||+| +|+++...+|+++|. +-|+|+.|.+.. ||.||+|.|+|+++|.+++|++.+|.+.+.||.|.||.
T Consensus 42 ~r~R~vfItN-Ipyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITN-IPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEec-CcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999 999999999999996 689999999995 99999999999999999999999999999999999986
Q ss_pred ccc
Q 008448 412 YRE 414 (565)
Q Consensus 412 A~~ 414 (565)
-..
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 543
No 66
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.51 E-value=2e-07 Score=91.28 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=71.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcC-CCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTY-GPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~f-G~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...-+||+. ++.-+.+..+..||.+| |.|..+++. ||.+||||||.|++++.|+-|.+.||+..+.|+.+.|..
T Consensus 48 ~~g~~~~~~-~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDH-IPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred Cccceeecc-cccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 445689999 99999999999999998 888888886 499999999999999999999999999999999999988
Q ss_pred cccC
Q 008448 412 YREK 415 (565)
Q Consensus 412 A~~K 415 (565)
-.|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8776
No 67
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.41 E-value=2.3e-07 Score=93.85 Aligned_cols=83 Identities=17% Similarity=0.305 Sum_probs=76.2
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
.++....|||=. ||.++++.+|-..|-.||.|++.++. ++++|.||||.|+++..+++||..||+..|+-++++|
T Consensus 281 eGPeGCNlFIYH-LPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 281 EGPEGCNLFIYH-LPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred cCCCcceEEEEe-CchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 456778999999 99999999999999999999988776 4889999999999999999999999999999999999
Q ss_pred EecccCcc
Q 008448 410 KPYREKSK 417 (565)
Q Consensus 410 k~A~~K~k 417 (565)
...+||..
T Consensus 360 QLKRPkda 367 (371)
T KOG0146|consen 360 QLKRPKDA 367 (371)
T ss_pred hhcCcccc
Confidence 88877753
No 68
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=3.6e-07 Score=95.34 Aligned_cols=84 Identities=13% Similarity=0.249 Sum_probs=75.6
Q ss_pred CCCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEE
Q 008448 333 PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (565)
Q Consensus 333 ~~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~ 408 (565)
...|+..-|||.- |..-+|.++|.-+|+.||+|..|.|+. |-+-.||||+|++.++.++|.-+|+...|++|+|.
T Consensus 234 d~~PPeNVLFVCK-LNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCK-LNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred ccCCCcceEEEEe-cCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 4556778999999 999999999999999999999999995 66677999999999999999999999999999999
Q ss_pred EEecccCcc
Q 008448 409 VKPYREKSK 417 (565)
Q Consensus 409 Vk~A~~K~k 417 (565)
|...+.-.+
T Consensus 313 VDFSQSVsk 321 (479)
T KOG0415|consen 313 VDFSQSVSK 321 (479)
T ss_pred eehhhhhhh
Confidence 987765444
No 69
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.35 E-value=6.2e-07 Score=93.90 Aligned_cols=74 Identities=16% Similarity=0.354 Sum_probs=69.4
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
.+|||.. +..+++|+||+..|+.||+|..|.+-. +.+|||||++|.+...-..|+..||-..++|.-++|.++.
T Consensus 211 nRiYVaS-vHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 211 NRIYVAS-VHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred heEEeee-cCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 5899999 999999999999999999999999984 6799999999999999999999999999999999997764
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.29 E-value=1.3e-06 Score=97.90 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=68.6
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCC-------CCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ-------KRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk-------~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
.+|||.| |.+++|.+++...|..+|.|..+.|...+ +.|||||.|.+.++|++|+..|+++.|+|+.|.|+.
T Consensus 516 t~lfvkN-lnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKN-LNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhc-CCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 4499999 99999999999999999999999999622 349999999999999999999999999999999999
Q ss_pred cc
Q 008448 412 YR 413 (565)
Q Consensus 412 A~ 413 (565)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.28 E-value=5.6e-07 Score=100.70 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=73.7
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
..+|.|.| +++..+-.+|+.+|..||.|.+|+|+. +-+||||||+|-++.+|.+|+..+...-+.||++.+.||.
T Consensus 613 ~tKIlVRN-ipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRN-IPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeec-cchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 46999999 999999999999999999999999994 5679999999999999999999998889999999999998
Q ss_pred cCcch
Q 008448 414 EKSKL 418 (565)
Q Consensus 414 ~K~k~ 418 (565)
.....
T Consensus 692 ~d~~~ 696 (725)
T KOG0110|consen 692 SDNTM 696 (725)
T ss_pred cchHH
Confidence 76543
No 72
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.28 E-value=1.1e-06 Score=96.21 Aligned_cols=76 Identities=21% Similarity=0.351 Sum_probs=70.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecC----CCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~g----k~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..+.+||.+ |...+...+|+.+|++||+|+-.+|+++ -.|.|||||+.+.++|.++|+.++...+.||.|.|..+
T Consensus 404 ~gRNlWVSG-LSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSG-LSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeec-cccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 458899999 9999999999999999999999999972 24779999999999999999999999999999999988
Q ss_pred c
Q 008448 413 R 413 (565)
Q Consensus 413 ~ 413 (565)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 7
No 73
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.27 E-value=1.6e-06 Score=93.98 Aligned_cols=75 Identities=23% Similarity=0.423 Sum_probs=67.5
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
.+|||.| ||.++++++|+++|.+||+|+..+|.. ++...||||+|.+.+.++.|+.+ +...|+|+++.|+.-++
T Consensus 289 ~~i~V~n-lP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKN-LPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeec-CCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 4599999 999999999999999999999999884 45558999999999999999999 49999999999987665
Q ss_pred C
Q 008448 415 K 415 (565)
Q Consensus 415 K 415 (565)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 4
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=9.3e-07 Score=94.75 Aligned_cols=80 Identities=19% Similarity=0.454 Sum_probs=74.5
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
....|||.| ++..++.+.|+++|+.||+|..++|+. ++++|||||.|.+.++|.+|+..+|+..+.++.+.|.++.
T Consensus 269 ~~~nl~vkn-ld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q 347 (369)
T KOG0123|consen 269 QGANLYVKN-LDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ 347 (369)
T ss_pred ccccccccc-CccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh
Confidence 457899999 999999999999999999999999996 8999999999999999999999999999999999999988
Q ss_pred cCcc
Q 008448 414 EKSK 417 (565)
Q Consensus 414 ~K~k 417 (565)
.+..
T Consensus 348 r~~~ 351 (369)
T KOG0123|consen 348 RKED 351 (369)
T ss_pred hhcc
Confidence 4433
No 75
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.20 E-value=2.4e-06 Score=91.26 Aligned_cols=73 Identities=21% Similarity=0.105 Sum_probs=68.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
....+|||.| ||+++|.+.||+-|..||.|..+.|+. |+++| .|.|.++++|++|+..||+..++||.|+|..
T Consensus 534 rKa~qIiirN-lP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRN-LPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEec-CCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4568899999 999999999999999999999999984 88887 8999999999999999999999999999975
No 76
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.13 E-value=1.9e-06 Score=85.73 Aligned_cols=72 Identities=26% Similarity=0.492 Sum_probs=66.8
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
.++|||+ +++.+.+.+|.++|..||.|.+|.|. .|||||.|++.-+|..|+..+|+.+|+|.++.|.++..+
T Consensus 2 ~rv~vg~-~~~~~~~~d~E~~f~~yg~~~d~~mk----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGR-LPYRARERDVERFFKGYGKIPDADMK----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred Cceeecc-cCCccchhHHHHHHhhccccccceee----cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999 99999999999999999999999885 489999999999999999999999999999888888753
No 77
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.06 E-value=1.1e-05 Score=90.49 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=73.2
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-------CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-------QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-------gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V 407 (565)
.|..+.+|||| |+..++|+.|-..|+.||+|..|+|+. .+.+-+|||.|-+..+|++|++.|++.++.++.+
T Consensus 171 DP~TTNlyv~N-lnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGN-LNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeec-CCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 45678999999 999999999999999999999999994 5667899999999999999999999999999999
Q ss_pred EEEeccc
Q 008448 408 LVKPYRE 414 (565)
Q Consensus 408 ~Vk~A~~ 414 (565)
++.|++.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999853
No 78
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.04 E-value=1.9e-06 Score=85.34 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=71.7
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
..+..+||||+| +...++|+-|.++|-+-|+|..|.|+. ++.+ ||||.|.++-.+.-|++.+|+..+.++.+.|+
T Consensus 5 aae~drtl~v~n-~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQN-MYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHh-hhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 344668999999 999999999999999999999999996 4556 99999999999999999999999999999998
Q ss_pred ecccC
Q 008448 411 PYREK 415 (565)
Q Consensus 411 ~A~~K 415 (565)
.-...
T Consensus 83 ~r~G~ 87 (267)
T KOG4454|consen 83 LRCGN 87 (267)
T ss_pred cccCC
Confidence 75543
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.00 E-value=1.5e-05 Score=80.96 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=72.4
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...+.+|+|.| |++.++++||+++|.+||.+..+-|-+ |++.|.|=|+|...++|.+|++.+|+..++|+.+++..
T Consensus 80 ~~~~~~v~v~N-L~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSN-LPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeec-CCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 34568999999 999999999999999999999998886 78889999999999999999999999999999998876
Q ss_pred cccC
Q 008448 412 YREK 415 (565)
Q Consensus 412 A~~K 415 (565)
..+.
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 6543
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.85 E-value=2e-05 Score=79.63 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=70.9
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..+.+|||| +++.+|-+++..+|+.||.|..|.|++ +++||||||.|.+.+.++.|+. +|+..|.|+.+.|.+.
T Consensus 100 d~~sv~v~n-vd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 100 DAPSVWVGN-VDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred CCceEEEec-cccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 457899999 999999999999999999999999985 6789999999999999999999 8999999999999887
Q ss_pred ccC
Q 008448 413 REK 415 (565)
Q Consensus 413 ~~K 415 (565)
+-+
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 655
No 81
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.74 E-value=2.1e-05 Score=79.50 Aligned_cols=76 Identities=12% Similarity=0.258 Sum_probs=68.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
...+||.|- |..+++.+.|.+.|.+|-.-...+++ +|+++|||||.|.+..++.+|+.+||+.+++.|.|+....
T Consensus 189 ~DfRIfcgd-lgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGD-LGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeeccc-ccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 446999999 99999999999999999888877777 3999999999999999999999999999999999987654
Q ss_pred c
Q 008448 413 R 413 (565)
Q Consensus 413 ~ 413 (565)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 3
No 82
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.55 E-value=0.00061 Score=71.65 Aligned_cols=76 Identities=11% Similarity=0.170 Sum_probs=68.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeE--------EEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeee
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD--------VRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~--------V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr 405 (565)
....|||.| ||.++|-+++.++|+++|-|.. |+|-. |+-+|=|.++|-..|+|..|+..++...+.|+
T Consensus 133 ~Nt~VYVsg-LP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSG-LPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecC-CCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 456799999 9999999999999999998864 34432 88999999999999999999999999999999
Q ss_pred EEEEEecc
Q 008448 406 RVLVKPYR 413 (565)
Q Consensus 406 ~V~Vk~A~ 413 (565)
.|+|..|+
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99999886
No 83
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.55 E-value=0.00027 Score=70.51 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=69.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-C----CCCcEEEEEECCHHHHHHHHHccCCceee---eeEEE
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-Q----QKRMFGFVTFASADTVKMILAKGNPHFVC---GARVL 408 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-g----k~RGfaFVtF~~~e~A~~Al~~lN~~~i~---Gr~V~ 408 (565)
.-+||||.+ ||.++...+|..+|..|---+.+.|-+ + -++-+|||+|.+...|.+|+..+|+..|+ +..++
T Consensus 33 ~VRTLFVSG-LP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSG-LPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeecc-CCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 358999999 999999999999999997666665553 2 24469999999999999999999999985 78899
Q ss_pred EEecccCcchhhh
Q 008448 409 VKPYREKSKLVDR 421 (565)
Q Consensus 409 Vk~A~~K~k~~~k 421 (565)
+..|+...+...+
T Consensus 112 iElAKSNtK~kr~ 124 (284)
T KOG1457|consen 112 IELAKSNTKRKRR 124 (284)
T ss_pred eeehhcCcccccC
Confidence 9888876655433
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=6.3e-05 Score=82.80 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=65.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~ 408 (565)
....++|+|-| |+.++++++|+..|+.||+|.+|+... ..+|-.||.|-|..+|++|++.+|+..|.|++++
T Consensus 72 ~~~~~~L~v~n-l~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFN-LPRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEe-cCCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34568999999 999999999999999999999977654 4689999999999999999999999999999998
No 85
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.52 E-value=0.00027 Score=77.01 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=68.0
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec--CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC--QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~--gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
+...-|-+.+ |||.+|+++|.+||+.+ .|+++.+++ |+..|=|||+|.++|++++|+++ +...+..|-|.|..+.
T Consensus 8 ~~~~~vr~rG-LPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRG-LPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecC-CCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 3445677788 99999999999999999 488888885 89999999999999999999998 6889999999998886
Q ss_pred cCc
Q 008448 414 EKS 416 (565)
Q Consensus 414 ~K~ 416 (565)
.+.
T Consensus 85 ~~e 87 (510)
T KOG4211|consen 85 GAE 87 (510)
T ss_pred Ccc
Confidence 544
No 86
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.40 E-value=3e-05 Score=52.82 Aligned_cols=23 Identities=43% Similarity=1.178 Sum_probs=18.1
Q ss_pred cccceeccc-cccCCCCCcccccc
Q 008448 183 VKTCHYFNK-GFCKHGSNCRYYHG 205 (565)
Q Consensus 183 ~kpC~YF~r-G~Ck~G~sCrf~HG 205 (565)
-++|.+|.+ |.|++|.+|+|.|+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 368998888 99999999999998
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.19 E-value=0.00084 Score=74.35 Aligned_cols=81 Identities=16% Similarity=0.299 Sum_probs=73.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
-...+||||+ |+..+++.++++....||++....++ +|.++||||..|.+......|++.+|+..++++++.|..
T Consensus 287 ~~~~ki~v~~-lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 287 DSPNKIFVGG-LPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred cccchhhhcc-CcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 3558999999 99999999999999999999988887 378999999999999999999999999999999999998
Q ss_pred cccCcc
Q 008448 412 YREKSK 417 (565)
Q Consensus 412 A~~K~k 417 (565)
|..-..
T Consensus 366 A~~g~~ 371 (500)
T KOG0120|consen 366 AIVGAS 371 (500)
T ss_pred hhccch
Confidence 876543
No 88
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.18 E-value=0.00063 Score=73.97 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=54.4
Q ss_pred CCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccCc
Q 008448 351 FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (565)
Q Consensus 351 ~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K~ 416 (565)
-|.++|..+|.+||.|.+|.|-+. ---|.|||.+..+|-.|... .+..|+||.|+|.|-.+..
T Consensus 385 nt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 385 NTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred chHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhcc-ccceecCceeEEEEecCCc
Confidence 467899999999999999998773 34589999999999888776 4899999999999998865
No 89
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.01 E-value=0.00038 Score=72.45 Aligned_cols=80 Identities=21% Similarity=0.409 Sum_probs=72.6
Q ss_pred CcceEE-EeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 337 GSRQIY-LTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 337 ~~~kIf-Vgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
.+.++| |++ +++.+++++|+.+|..+|.|..+++++ +.++|||+|.|.+......++.. ..+.+.|+.+.+..
T Consensus 183 ~s~~~~~~~~-~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 183 PSDTIFFVGE-LDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred ccccceeecc-cccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 445777 999 999999999999999999999999995 88999999999999999999998 78999999999998
Q ss_pred cccCcch
Q 008448 412 YREKSKL 418 (565)
Q Consensus 412 A~~K~k~ 418 (565)
..++.+.
T Consensus 261 ~~~~~~~ 267 (285)
T KOG4210|consen 261 DEPRPKS 267 (285)
T ss_pred CCCCccc
Confidence 8877654
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.94 E-value=0.003 Score=67.79 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=68.8
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
...|.|.|.-+..+|.+.|-.+|+-||.|.+|+|.+.++ --|.|.|.+...|+-|++.++++.+.|++|+|...+-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 578889994457899999999999999999999998654 6799999999999999999999999999999988774
No 91
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.90 E-value=0.00045 Score=46.07 Aligned_cols=22 Identities=32% Similarity=1.164 Sum_probs=20.6
Q ss_pred ccceeccccccCCCCCcccccc
Q 008448 184 KTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 184 kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
.+|.+|..|.|+.|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899999999999999999997
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.77 E-value=0.0035 Score=54.15 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=47.6
Q ss_pred ceEEEeCCCCCCCCHHHHHHH----hhcC-CCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 339 RQIYLTFPAESTFTEDDVSNY----FNTY-GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~----Fs~f-G~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
..|||.| ||.+.+...|+.- +..+ |.|.+| ..+-|.|.|.+++.|++|.+.|++..+.|++|.|....
T Consensus 3 s~L~V~N-LP~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSN-LPTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEec-CCCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4689999 9998887766654 4455 588887 25789999999999999999999999999999999875
Q ss_pred cCcc
Q 008448 414 EKSK 417 (565)
Q Consensus 414 ~K~k 417 (565)
....
T Consensus 76 ~~r~ 79 (90)
T PF11608_consen 76 KNRE 79 (90)
T ss_dssp -S--
T ss_pred Cccc
Confidence 4443
No 93
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.76 E-value=0.00091 Score=66.93 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=62.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
....+.|.+ +...+...+|.++|++||++..+.+ .++++||.|+..+++++|++.+++..+.|+.|.+..+
T Consensus 98 s~~r~~~~~-~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 98 THFRLIVRN-LSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccceeeecc-chhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 346788888 8899999999999999999966655 4789999999999999999999999999999999443
No 94
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.59 E-value=0.011 Score=52.35 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=60.3
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhc--CCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceee----eeEEE
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNT--YGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVC----GARVL 408 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~--fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~----Gr~V~ 408 (565)
+||-|.| +|...|.++|.+++.. .|...-+.+|- +-+.|||||.|.+++.|.+-.+..++..+. .+.+.
T Consensus 2 TTvMirN-IPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRN-IPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEec-CCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 5899999 9999999999988865 47777777773 668999999999999999999988776664 45566
Q ss_pred EEeccc
Q 008448 409 VKPYRE 414 (565)
Q Consensus 409 Vk~A~~ 414 (565)
|.+|+-
T Consensus 81 i~yAri 86 (97)
T PF04059_consen 81 ISYARI 86 (97)
T ss_pred EehhHh
Confidence 666643
No 95
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.59 E-value=0.0049 Score=48.44 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=41.1
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHH
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMIL 394 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al 394 (565)
+.|-|.+ .+.... +.|.++|.+||+|+++.+.. ..-+.+|+|.+..+|++||
T Consensus 2 ~wI~V~G-f~~~~~-~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSG-FPPDLA-EEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEe-ECchHH-HHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 4677777 444333 55777999999999999874 4568999999999999985
No 96
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.55 E-value=0.0014 Score=70.72 Aligned_cols=117 Identities=20% Similarity=0.216 Sum_probs=84.1
Q ss_pred ccccCCCchHHHHHHHhhcccccccCCCCchhhHhhhcccccccCCC---CCCC----CCCCCCCcceEEEeCCCCCCCC
Q 008448 280 QRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRN---ERSD----PGPIVTGSRQIYLTFPAESTFT 352 (565)
Q Consensus 280 qR~gkaGy~~~klla~lqn~i~~idr~~gq~~v~l~eda~k~~~~r~---~r~d----~~~~~~~~~kIfVgn~L~~~~T 352 (565)
-|.-+.||.-+++++.. .+|+.+-|.+..-+.+|..-+.-++...+ .|.. +....-.+++|.+.| |+.+-.
T Consensus 167 vrrnkeGyVpv~~vaSF-KKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisPlp~~~~eel~srtivaen-LP~Dh~ 244 (484)
T KOG1855|consen 167 VRRNKEGYVPVKLVASF-KKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAEN-LPLDHS 244 (484)
T ss_pred HhcCCCCceeeehhhhH-HHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecCCCCCccccccccceEEEec-CCcchH
Confidence 34445699999999988 66777777766666665533322221111 1221 112223679999999 999999
Q ss_pred HHHHHHHhhcCCCeeEEEeec---------CC--------CCcEEEEEECCHHHHHHHHHccC
Q 008448 353 EDDVSNYFNTYGPVDDVRIPC---------QQ--------KRMFGFVTFASADTVKMILAKGN 398 (565)
Q Consensus 353 EedLr~~Fs~fG~V~~V~I~~---------gk--------~RGfaFVtF~~~e~A~~Al~~lN 398 (565)
-+.|.++|+.+|.|..|+|.. +. .+-+|+|+|+..+.|.+|.+.+|
T Consensus 245 ~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 245 YENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred HHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 999999999999999999973 21 24579999999999999999885
No 97
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.54 E-value=0.0062 Score=66.76 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=62.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeE-EEee---cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD-VRIP---CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~-V~I~---~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
....|-+.+ ||+.+|++||.+||+-.=.|.+ +.++ .+++-|=|||.|++.+.|++||.. +...|+.|-|.|..+
T Consensus 102 ~d~vVRLRG-LPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRG-LPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecC-CCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 345788899 9999999999999998766655 2233 277889999999999999999998 588999999999876
Q ss_pred c
Q 008448 413 R 413 (565)
Q Consensus 413 ~ 413 (565)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 5
No 98
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.52 E-value=0.016 Score=61.38 Aligned_cols=94 Identities=15% Similarity=0.205 Sum_probs=71.5
Q ss_pred ccCCCCCCCCCCCCCCcceEEEeCCCC---CCCC-------HHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHH
Q 008448 322 LENRNERSDPGPIVTGSRQIYLTFPAE---STFT-------EDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVK 391 (565)
Q Consensus 322 ~~~r~~r~d~~~~~~~~~kIfVgn~L~---~~~T-------EedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~ 391 (565)
.+.+.++ +........++|.+.|+.. +..+ .++|++--++||+|..|.|--..+.|.+-|+|.+.++|.
T Consensus 250 ~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~ 328 (382)
T KOG1548|consen 250 LDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEAD 328 (382)
T ss_pred cccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHH
Confidence 3445544 2233344567888888432 2233 456667789999999998876778999999999999999
Q ss_pred HHHHccCCceeeeeEEEEEecccCc
Q 008448 392 MILAKGNPHFVCGARVLVKPYREKS 416 (565)
Q Consensus 392 ~Al~~lN~~~i~Gr~V~Vk~A~~K~ 416 (565)
.++..|+|.+++||.|....+-.+.
T Consensus 329 ~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 329 QCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHhcCeeecceEEEEEEeCCcc
Confidence 9999999999999999998776554
No 99
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0091 Score=65.82 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=65.2
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhh-cCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCcee----eee
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFN-TYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFV----CGA 405 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs-~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i----~Gr 405 (565)
....+|||||+ |+.-+|.++|..+|. -||-|.-|-|-+ +..+|-|-|||.+...--+||+.. -..| -.+
T Consensus 367 lDprrTVFVGg-vprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar-Fvql~h~d~~K 444 (520)
T KOG0129|consen 367 IDPRRTVFVGG-LPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR-FVQLDHTDIDK 444 (520)
T ss_pred cCccceEEecC-CCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh-eEEEeccccce
Confidence 34669999999 999999999999999 799999998886 568999999999999999999863 2222 246
Q ss_pred EEEEEecc
Q 008448 406 RVLVKPYR 413 (565)
Q Consensus 406 ~V~Vk~A~ 413 (565)
+|.|+++.
T Consensus 445 RVEIkPYv 452 (520)
T KOG0129|consen 445 RVEIKPYV 452 (520)
T ss_pred eeeeccee
Confidence 88998887
No 100
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.35 E-value=0.0015 Score=72.24 Aligned_cols=73 Identities=22% Similarity=0.386 Sum_probs=66.0
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
+|+|+-- +.-..++-+|.++|+.+|+|.+|+|+. ++++|.|+|+|.+.+.+-.|+.- .|..+.|..|.|....
T Consensus 180 Rtvf~~q-la~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 180 RTVFCMQ-LARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHH-HhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCcccCceeEecccH
Confidence 7888888 888999999999999999999999995 78999999999999999999954 6999999999997653
No 101
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.12 E-value=0.012 Score=52.55 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=36.9
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHcc
Q 008448 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397 (565)
Q Consensus 340 kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~l 397 (565)
-|.|.+ ++..++.++|++.|++||+|.-|.+..|. --|+|-|.+++.|++|++.+
T Consensus 3 il~~~g-~~~~~~re~iK~~f~~~g~V~yVD~~~G~--~~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 3 ILKFSG-LGEPTSREDIKEAFSQFGEVAYVDFSRGD--TEGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp EEEEEE---SS--HHHHHHHT-SS--EEEEE--TT---SEEEEEESS---HHHHHHHH
T ss_pred EEEEec-CCCCcCHHHHHHHHHhcCCcceEEecCCC--CEEEEEECCcchHHHHHHHH
Confidence 367777 88899999999999999999999987744 37999999999999999976
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.08 E-value=0.011 Score=62.37 Aligned_cols=77 Identities=12% Similarity=0.284 Sum_probs=59.2
Q ss_pred cceEEEeCCCCCCCCHHH----H--HHHhhcCCCeeEEEeecCC-----CCc-E-EEEEECCHHHHHHHHHccCCceeee
Q 008448 338 SRQIYLTFPAESTFTEDD----V--SNYFNTYGPVDDVRIPCQQ-----KRM-F-GFVTFASADTVKMILAKGNPHFVCG 404 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEed----L--r~~Fs~fG~V~~V~I~~gk-----~RG-f-aFVtF~~~e~A~~Al~~lN~~~i~G 404 (565)
..-+||-+ ++..+-.|+ | .+||++||.|..|.|-... -.+ + .+|||...|+|.+++...++..++|
T Consensus 114 KNLvYVig-i~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIG-IPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEec-CCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 45689999 666555544 2 4899999999999776311 112 3 3999999999999999999999999
Q ss_pred eEEEEEecccC
Q 008448 405 ARVLVKPYREK 415 (565)
Q Consensus 405 r~V~Vk~A~~K 415 (565)
|.|++.....|
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99988776543
No 103
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.02 E-value=0.023 Score=56.94 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=64.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceee-eeEEEEEec
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC-GARVLVKPY 412 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~-Gr~V~Vk~A 412 (565)
.+....+|+.+ +|..++.+.+..+|.+|.--.+|+++.++ ++.|||+|.+...+..|...+.+..|- ...+.|..+
T Consensus 143 ~ppn~ilf~~n-iP~es~~e~l~~lf~qf~g~keir~i~~~-~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 143 APPNNILFLTN-IPSESESEMLSDLFEQFPGFKEIRLIPPR-SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCceEEEEec-CCcchhHHHHHHHHhhCcccceeEeccCC-CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 45678999999 99999999999999999999999999765 689999999999999998887665554 555666554
No 104
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.97 E-value=0.02 Score=50.91 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=50.0
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhcCCCeeEEE-------------eecCCCCcEEEEEECCHHHHHHHHHccCCceeeee-
Q 008448 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVR-------------IPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA- 405 (565)
Q Consensus 340 kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~-------------I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr- 405 (565)
-|.|=+ -|.. ....|-++|++||+|.+.. ++. ...+-.|+|+++.+|++||.+ |+..|.|.
T Consensus 8 wVtVFG-fp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 8 WVTVFG-FPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp EEEEE----GG-GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred EEEEEc-cCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 344544 3433 4567889999999999885 333 456899999999999999988 89999874
Q ss_pred EEEEEeccc
Q 008448 406 RVLVKPYRE 414 (565)
Q Consensus 406 ~V~Vk~A~~ 414 (565)
.|-|++.++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 666777743
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.023 Score=62.69 Aligned_cols=60 Identities=22% Similarity=0.386 Sum_probs=49.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-------CCCCc---EEEEEECCHHHHHHHHHcc
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-------QQKRM---FGFVTFASADTVKMILAKG 397 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-------gk~RG---faFVtF~~~e~A~~Al~~l 397 (565)
.-+++||||+ |+++++|+.|...|..||.|. |..+. -.++| |+|+.|+++..++..+..-
T Consensus 257 ~~S~KVFvGG-lp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGG-LPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecC-CCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3578999999 999999999999999999864 33441 23567 9999999999999887763
No 106
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.59 E-value=0.012 Score=59.21 Aligned_cols=65 Identities=11% Similarity=0.239 Sum_probs=52.5
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCcee
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV 402 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i 402 (565)
.-.||||.| |..++||++|+.+|+.|--...++|-....--.|||.|++-+.|..|+..+.+..|
T Consensus 209 acstlfian-l~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIAN-LGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhc-cCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 447999999 99999999999999999877777776422334799999999999988887755544
No 107
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.55 E-value=0.0064 Score=38.27 Aligned_cols=19 Identities=32% Similarity=0.945 Sum_probs=16.9
Q ss_pred cceeccccccCCCCCcccccc
Q 008448 185 TCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 185 pC~YF~rG~Ck~G~sCrf~HG 205 (565)
+|+||.. |++|.+|.|.|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 6998876 999999999994
No 108
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.49 E-value=0.032 Score=62.10 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=52.3
Q ss_pred HHHHHHhhcCCCeeEEEeec-------CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 354 DDVSNYFNTYGPVDDVRIPC-------QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 354 edLr~~Fs~fG~V~~V~I~~-------gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
|+|+.-+++||.|..|.|+. .-.-|--||+|.+.+++++|.+.|+|..+.||.|....+-+.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 45566679999999999984 234566899999999999999999999999999988877543
No 109
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.40 E-value=0.0053 Score=65.91 Aligned_cols=24 Identities=46% Similarity=1.218 Sum_probs=23.0
Q ss_pred CcccceeccccccCCCCCcccccc
Q 008448 182 PVKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 182 ~~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
..|||.||-.|-|+.|.+|||.||
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG 162 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHG 162 (486)
T ss_pred hhccchHhhccccccCcccccccC
Confidence 479999999999999999999999
No 110
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.31 E-value=0.019 Score=60.90 Aligned_cols=84 Identities=13% Similarity=0.214 Sum_probs=72.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeE--------EEee----cCCCCcEEEEEECCHHHHHHHHHccCCcee
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD--------VRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFV 402 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~--------V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i 402 (565)
.+...+|||-. ++..+++.+|.++|.++|.|.. |.|- |++.||=|-|+|+++-.|++|+.-.++..+
T Consensus 63 ~s~~~ti~v~g-~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWG-CPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeec-cCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 34557999999 9999999999999999998853 2222 478999999999999999999999999999
Q ss_pred eeeEEEEEecccCcchh
Q 008448 403 CGARVLVKPYREKSKLV 419 (565)
Q Consensus 403 ~Gr~V~Vk~A~~K~k~~ 419 (565)
+|-.|+|..|..+..+.
T Consensus 142 ~gn~ikvs~a~~r~~ve 158 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTGVE 158 (351)
T ss_pred cCCCchhhhhhhccCcc
Confidence 99999999988777544
No 111
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.05 E-value=0.012 Score=59.93 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=58.0
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec------------CCCCc--E--EEEEECCHHHHHHHHHccCCcee
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC------------QQKRM--F--GFVTFASADTVKMILAKGNPHFV 402 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~------------gk~RG--f--aFVtF~~~e~A~~Al~~lN~~~i 402 (565)
.-||+++ +|..+....||++|++||.|-.|.+.. |.+++ | |.|+|.+-..|+++...+|+..|
T Consensus 75 GVvylS~-IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSN-IPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred eEEEecc-CCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4699999 999999999999999999999999983 12222 2 89999999999999999999999
Q ss_pred eeeE
Q 008448 403 CGAR 406 (565)
Q Consensus 403 ~Gr~ 406 (565)
+|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9863
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.89 E-value=0.032 Score=63.44 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=69.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeE-EEee---cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD-VRIP---CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~-V~I~---~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
.....|||-. |+..+++.++-++|..--.|++ |.|. +++.++-|||.|..++++..|+.-...++++.|.|+|..
T Consensus 432 ~ag~~lyv~~-lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQ-LPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEecc-CCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 3557899999 9999999999999999888888 5554 378899999999999888888887789999999999987
Q ss_pred cccCcc
Q 008448 412 YREKSK 417 (565)
Q Consensus 412 A~~K~k 417 (565)
..++.-
T Consensus 511 i~~~~m 516 (944)
T KOG4307|consen 511 IADYAM 516 (944)
T ss_pred hhhHHH
Confidence 666544
No 113
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.88 E-value=0.031 Score=62.36 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=57.6
Q ss_pred ceEEEeCCCCCC--CC----HHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceee-eeEEE
Q 008448 339 RQIYLTFPAEST--FT----EDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVC-GARVL 408 (565)
Q Consensus 339 ~kIfVgn~L~~~--~T----EedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~-Gr~V~ 408 (565)
.-|+|.| +|-- .. ..-|..+|+++|+|+.+.++. |..+||.|+.|.+..+|+.|++.+||+.|+ +.+..
T Consensus 59 ~vVvv~g-~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDG-APVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECC-CcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 4577777 5531 11 234567899999999999993 779999999999999999999999988876 56666
Q ss_pred EEecc
Q 008448 409 VKPYR 413 (565)
Q Consensus 409 Vk~A~ 413 (565)
|...+
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 66554
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.62 E-value=0.011 Score=68.41 Aligned_cols=76 Identities=9% Similarity=0.000 Sum_probs=67.9
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
..+++|.| +++..|.+.++.+++.+|.++++++++ |+.+|.|||.|.++.++.++...++...+.-+.+.|....|
T Consensus 736 K~~v~i~g-~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISG-PPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeC-CCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 56899999 999999999999999999999999886 89999999999999999999998887777777777766554
No 115
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.50 E-value=0.08 Score=57.27 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=68.4
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeee-EEEEEecc
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA-RVLVKPYR 413 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr-~V~Vk~A~ 413 (565)
-|++.+|.+.| +|..++||+|++.|..-|-+.....-.++.+-+|.+.+.+.|+|-.|+-.++.|.+++- .++|...+
T Consensus 411 ~PpsatlHlsn-ip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 411 FPPSATLHLSN-IPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CCchhheeecc-CCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 35678999999 99999999999999999988877777778888999999999999999999988888765 78887764
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.46 E-value=0.18 Score=47.78 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=53.7
Q ss_pred CCCCCCcceEEEeCCCC------CCCCH---HHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCcee
Q 008448 332 GPIVTGSRQIYLTFPAE------STFTE---DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV 402 (565)
Q Consensus 332 ~~~~~~~~kIfVgn~L~------~~~TE---edLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i 402 (565)
+..+|+..||.|.- +. ..+.+ .+|-..|.+||+|.=||+..+ -=+|||.+-+.|-+|+.. ++..+
T Consensus 21 ~~~GPpDaTVvVsv-~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals~-dg~~v 94 (146)
T PF08952_consen 21 SSQGPPDATVVVSV-DSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALSL-DGIQV 94 (146)
T ss_dssp -----TT-EEEEEE-CS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHHG-CCSEE
T ss_pred HhcCCCCceEEEEe-cCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHcc-CCcEE
Confidence 45677888998875 55 23333 256678899999999998863 468999999999999987 79999
Q ss_pred eeeEEEEEeccc
Q 008448 403 CGARVLVKPYRE 414 (565)
Q Consensus 403 ~Gr~V~Vk~A~~ 414 (565)
+|+.|.|+...|
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999987554
No 117
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.19 E-value=0.049 Score=57.75 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=61.1
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCC--eeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGP--VDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~--V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
-.+|||| |-|.+|++||-+....-|- +.+++.. .|++||||.|...+...+++.++.+-...|.|..-.|-.+
T Consensus 81 ~~~YvGN-L~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGN-LLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecc-eeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4689999 9999999999988877773 3344443 2899999999999999999999999999999987777655
Q ss_pred c
Q 008448 413 R 413 (565)
Q Consensus 413 ~ 413 (565)
.
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 4
No 118
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.95 E-value=0.023 Score=59.72 Aligned_cols=27 Identities=48% Similarity=1.053 Sum_probs=24.4
Q ss_pred ccCCcccceeccc-cccCCCCCcccccc
Q 008448 179 AELPVKTCHYFNK-GFCKHGSNCRYYHG 205 (565)
Q Consensus 179 ~~~~~kpC~YF~r-G~Ck~G~sCrf~HG 205 (565)
....-++|.+|.+ |+||.|..|+|.|+
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~ 200 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHG 200 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCC
Confidence 3456789999999 99999999999999
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.75 E-value=0.17 Score=57.96 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=62.6
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCee-EEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVD-DVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~-~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
+-|-+.| .+++++-+||-+||..|-.+- +|+|-+ |..-|=+-|-|++.++|++|...+++..|.+|.|.+..
T Consensus 868 ~V~~~~n-~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNN-FPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecC-CCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 5677888 999999999999999997665 455544 77888999999999999999999999999999998753
No 120
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=93.44 E-value=0.3 Score=52.52 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=66.5
Q ss_pred CcceEEEeCCCC-CCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 337 GSRQIYLTFPAE-STFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 337 ~~~kIfVgn~L~-~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
...-+.|-+ |+ ..+.-+.|-++|..||.|+.|+.+.- ..|-|.|+.-+..++++|+..+|+..+-|.+|.|...+..
T Consensus 286 ~g~VmMVyG-Ldh~k~N~drlFNl~ClYGNV~rvkFmkT-k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 286 PGCVMMVYG-LDHGKMNCDRLFNLFCLYGNVERVKFMKT-KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCcEEEEEe-ccccccchhhhhhhhhhcCceeeEEEeec-ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 446677777 77 46777899999999999999999953 4688999999999999999999999999999999987643
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.08 E-value=0.16 Score=59.49 Aligned_cols=82 Identities=11% Similarity=0.124 Sum_probs=69.1
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeee--eEEEEEec
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG--ARVLVKPY 412 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~G--r~V~Vk~A 412 (565)
....+.++||+ |...+.-..|...|..||+|..|.+-.|.. ||+|.|++...++.|+..|-+.-|+| +++.|..+
T Consensus 452 st~ttr~~sgg-lg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGG-LGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCC-CCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 34568999999 888888999999999999999988876554 99999999999999999988888875 77888888
Q ss_pred ccCcchh
Q 008448 413 REKSKLV 419 (565)
Q Consensus 413 ~~K~k~~ 419 (565)
.+-...+
T Consensus 529 ~~~~~~P 535 (975)
T KOG0112|consen 529 SPPGATP 535 (975)
T ss_pred cCCCCCh
Confidence 7655444
No 122
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=92.89 E-value=0.07 Score=44.78 Aligned_cols=49 Identities=29% Similarity=0.430 Sum_probs=38.9
Q ss_pred HHHHhhhhccCCCchhhhhhhhhcc-cchhHHhhcCchHHHHHHHHHHHHH
Q 008448 8 RIVFNRIKKLDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAE 57 (565)
Q Consensus 8 ~~v~~ri~~~~pe~a~ki~g~ll~q-e~~mirla~gp~~~~~~~~~~ak~~ 57 (565)
..+|.+|++++|++|.||-|.||=- ..|++.|=-.| .+|+..|..|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLLe~~~~ell~ll~~~-~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLLEMDNSELLHLLEDP-ELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHhcCCHHHHHHHhCCH-HHHHHHHHHHHHh
Confidence 4689999999999999999998875 66777776554 6677777777543
No 123
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=92.77 E-value=0.12 Score=42.47 Aligned_cols=50 Identities=28% Similarity=0.480 Sum_probs=37.1
Q ss_pred HHHHhhhhccCCCchhhhhhhhhcc-cchhHHhhcCchHHHHHHHHHHHHHH
Q 008448 8 RIVFNRIKKLDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAEL 58 (565)
Q Consensus 8 ~~v~~ri~~~~pe~a~ki~g~ll~q-e~~mirla~gp~~~~~~~~~~ak~~l 58 (565)
.-+|.+|++++|+.|.||-|.||=- -.|++.| +..+.+|.+-|..|-.-|
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLEmd~~ell~l-le~~~~L~~kv~EA~~vl 61 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLEMDNSELLHL-LESPELLRSKVDEALEVL 61 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeCCCHHHHHHH-hcCHHHHHHHHHHHHHHH
Confidence 3589999999999999999988765 5566665 555666666666664433
No 124
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.46 E-value=0.27 Score=51.34 Aligned_cols=62 Identities=24% Similarity=0.266 Sum_probs=51.1
Q ss_pred HHHHHHHhhcCCCeeEEEeec--CC--C-CcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 353 EDDVSNYFNTYGPVDDVRIPC--QQ--K-RMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 353 EedLr~~Fs~fG~V~~V~I~~--gk--~-RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
|+++++-.++||.|..|-|.- +. . .---||.|+..+.|.+|+-.+|+.+|+||.|....+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 567888899999999997763 11 1 12379999999999999999999999999998887754
No 125
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=92.07 E-value=0.062 Score=54.96 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=49.2
Q ss_pred HHHHHHhh-cCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 354 DDVSNYFN-TYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 354 edLr~~Fs-~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
++|-..|+ +||+|+++.|-. -.-+|=++|.|..+|+|++|++.+|+.++.|++|......
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44444455 999999997664 2346789999999999999999999999999999887653
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.75 E-value=0.023 Score=65.82 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=64.6
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
.++||.+ |+..+.+++|+..|+.+|.|..|+|. .++-||+|+|.|..++.+.+|+.....+.++...|-|.-...
T Consensus 668 ~~~fvsn-l~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~pf 746 (881)
T KOG0128|consen 668 IKIFVSN-LSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGPPF 746 (881)
T ss_pred HHHHHhh-cchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCCCC
Confidence 5799999 99999999999999999999988887 388999999999999999999998877777655555544433
Q ss_pred Cc
Q 008448 415 KS 416 (565)
Q Consensus 415 K~ 416 (565)
+.
T Consensus 747 ~g 748 (881)
T KOG0128|consen 747 QG 748 (881)
T ss_pred CC
Confidence 33
No 127
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=91.36 E-value=0.29 Score=52.75 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=52.4
Q ss_pred EEEeCCCCCCCCHHHHHHHhhcC----CCeeEEEee---cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 341 IYLTFPAESTFTEDDVSNYFNTY----GPVDDVRIP---CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 341 IfVgn~L~~~~TEedLr~~Fs~f----G~V~~V~I~---~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
|-..+ |+++.|+.+|.+||.+- |-++.|-.+ .|+.-|=|||.|..+++|+.||.+ |...|+-|-|.+.+
T Consensus 164 vRmRG-LPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 164 VRMRG-LPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred EEecC-CCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 44567 99999999999999632 233344344 388999999999999999999988 46677666665543
No 128
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=91.29 E-value=1 Score=48.56 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeee--eEEEEEecccCc
Q 008448 348 ESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG--ARVLVKPYREKS 416 (565)
Q Consensus 348 ~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~G--r~V~Vk~A~~K~ 416 (565)
-+.+|-+-|..+....|+|.+|.|... .---|.|+|++.+.|++|.+.||+..|.- -.++|..|+|.+
T Consensus 131 ~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 131 QYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred ccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 368999999999999999999988862 23359999999999999999999887743 577888888754
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.00 E-value=0.051 Score=63.46 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=63.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
..+|||+|| |+.++++.+++..|..+|.|.+|.|-+ +.---||||.|.+.+.+-+|...+.+..|..-.+++....
T Consensus 371 atrTLf~Gn-l~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGN-LDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcC-cccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 568999999 999999999999999999999999986 4445699999999999888888876666655555555544
Q ss_pred c
Q 008448 414 E 414 (565)
Q Consensus 414 ~ 414 (565)
+
T Consensus 450 ~ 450 (975)
T KOG0112|consen 450 P 450 (975)
T ss_pred c
Confidence 4
No 130
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.87 E-value=0.54 Score=50.82 Aligned_cols=74 Identities=20% Similarity=0.353 Sum_probs=59.3
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-------CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-------QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-------gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
.-|-|.| |...+|.+++..+|.-.|.|.+++++. ....-.+||.|.+...|..|-..-|..+| ++.+.|.+
T Consensus 8 ~vIqvan-ispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv-draliv~p 85 (479)
T KOG4676|consen 8 GVIQVAN-ISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV-DRALIVRP 85 (479)
T ss_pred ceeeecc-cCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee-eeeEEEEe
Confidence 4799999 999999999999999999999999874 22334799999999999988776655555 45566666
Q ss_pred ccc
Q 008448 412 YRE 414 (565)
Q Consensus 412 A~~ 414 (565)
|..
T Consensus 86 ~~~ 88 (479)
T KOG4676|consen 86 YGD 88 (479)
T ss_pred cCC
Confidence 654
No 131
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=88.69 E-value=0.38 Score=51.83 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=63.4
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCee-E--EEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVD-D--VRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~-~--V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
..-|-+.+ |++..|.|+|-+||..|-.-+ - |+|+. |+.-|=|||.|.+.|.|.+|..+-+++....|-|.|..
T Consensus 280 kdcvRLRG-LPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRG-LPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecC-CChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 34688889 999999999999999987433 2 66663 78899999999999999999998777777789999987
Q ss_pred ccc
Q 008448 412 YRE 414 (565)
Q Consensus 412 A~~ 414 (565)
+.-
T Consensus 359 ~S~ 361 (508)
T KOG1365|consen 359 CSV 361 (508)
T ss_pred ccH
Confidence 653
No 132
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.59 E-value=0.15 Score=54.68 Aligned_cols=22 Identities=45% Similarity=1.079 Sum_probs=21.5
Q ss_pred ccceeccccccCCCCCcccccc
Q 008448 184 KTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 184 kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
.+|+||.+|+|+.|.-|||.|.
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~ 30 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHS 30 (344)
T ss_pred hhhhhcccccccccceeeeecc
Confidence 7999999999999999999999
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=88.25 E-value=0.45 Score=51.88 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=63.5
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCC-CeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCC-ceeeeeEEEEEecccCc
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYG-PVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNP-HFVCGARVLVKPYREKS 416 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG-~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~-~~i~Gr~V~Vk~A~~K~ 416 (565)
.++|+|| |...++..+|+.+|..-- .+..-.++ .-||+||...+..-|.+|++.+++ ..+.|+++.|....+|.
T Consensus 2 nklyign-L~p~~~psdl~svfg~ak~~~~g~fl~---k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 2 NKLYIGN-LSPQVTPSDLESVFGDAKIPGSGQFLV---KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred Ccccccc-cCCCCChHHHHHHhccccCCCCcceee---ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 4799999 999999999999997541 00111111 468999999999999999999874 57889999999998887
Q ss_pred chhhhHhh
Q 008448 417 KLVDRKYQ 424 (565)
Q Consensus 417 k~~~k~~~ 424 (565)
....+.+-
T Consensus 78 qrsrk~Qi 85 (584)
T KOG2193|consen 78 QRSRKIQI 85 (584)
T ss_pred HHhhhhhH
Confidence 66655443
No 134
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=88.13 E-value=2.3 Score=34.83 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=43.1
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcC---CCeeEEEeecCCCCcEEEEEECCHHHHHHHHHcc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTY---GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~f---G~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~l 397 (565)
...+|+|.+ ++ +++.++|+.||..| .....|..+-.. -+=|.|.+.+.|.+||..+
T Consensus 4 rpeavhirG-vd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRG-VD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEc-CC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 346899999 75 48889999999999 134466666433 3779999999999999764
No 135
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.98 E-value=1.8 Score=42.63 Aligned_cols=63 Identities=16% Similarity=0.051 Sum_probs=46.9
Q ss_pred CHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccC--CceeeeeEEEEEecccCc
Q 008448 352 TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN--PHFVCGARVLVKPYREKS 416 (565)
Q Consensus 352 TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN--~~~i~Gr~V~Vk~A~~K~ 416 (565)
..+.|+++|..|+++....+.. +-+-..|.|.+.++|.+|...++ +..+.|..++|..+..-.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4578999999999999888776 34458999999999999999988 889999999999885443
No 136
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=85.26 E-value=3.2 Score=39.56 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=56.0
Q ss_pred CCCcceEEEeCCCCCCCC-HHHHH---HHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFT-EDDVS---NYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~T-EedLr---~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
.+.-.||.|.- |..++. .+|++ ...+.||+|..|.+.- |.-|.|+|.+...|=+|+.+. ....-|..+.+.
T Consensus 83 epPMsTIVVRW-lkknm~~~edl~sV~~~Ls~fGpI~SVT~cG---rqsavVvF~d~~SAC~Av~Af-~s~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRW-LKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG---RQSAVVVFKDITSACKAVSAF-QSRAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeeh-hhhcCChHHHHHHHHHHHHhcCCcceeeecC---CceEEEEehhhHHHHHHHHhh-cCCCCCceEEee
Confidence 34667999988 776554 35555 4468899999997653 457999999999999999987 446677888887
Q ss_pred ecc
Q 008448 411 PYR 413 (565)
Q Consensus 411 ~A~ 413 (565)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 743
No 137
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=83.81 E-value=2.8 Score=41.57 Aligned_cols=71 Identities=11% Similarity=0.103 Sum_probs=58.4
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCcee--eeeEEEEEecc
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV--CGARVLVKPYR 413 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i--~Gr~V~Vk~A~ 413 (565)
.++.|.+ ||..-+.++|+++..+-|.|.-..+.. -|+|.|.|...|+.+-|+.+++...+ .|....+....
T Consensus 116 ~RVvVsG-Lp~SgSWQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~ 188 (241)
T KOG0105|consen 116 YRVVVSG-LPPSGSWQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRG 188 (241)
T ss_pred eeEEEec-CCCCCchHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecc
Confidence 5799999 999999999999999999999887764 57999999999999999998875544 35555554433
No 138
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.10 E-value=2.6 Score=44.46 Aligned_cols=64 Identities=25% Similarity=0.326 Sum_probs=51.4
Q ss_pred CHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeee-eEEEEEecccCcch
Q 008448 352 TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG-ARVLVKPYREKSKL 418 (565)
Q Consensus 352 TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~G-r~V~Vk~A~~K~k~ 418 (565)
.-.-|-..|++||+|.+.... +...+=.|.|.+.-+|++||.+ |+.+|+| ..|-|+....|...
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDksvi 273 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKSVI 273 (350)
T ss_pred chhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHHHh
Confidence 345677899999999988665 3556899999999999999988 7999987 46677887766544
No 139
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=82.64 E-value=0.8 Score=47.13 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=60.6
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee---cCCCCcEEEEEECCHHHHHHHHHccC----CceeeeeEEEEEe
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP---CQQKRMFGFVTFASADTVKMILAKGN----PHFVCGARVLVKP 411 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~---~gk~RGfaFVtF~~~e~A~~Al~~lN----~~~i~Gr~V~Vk~ 411 (565)
.-|||.| |...++-+.+..-|+.||+|....+. .++.-+=++|.|...-.+.+|+...+ ....+++.+.|.+
T Consensus 32 a~l~V~n-l~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVN-LMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEe-cchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 6799999 99999999999999999999865444 27777889999999999999988763 3455678887765
Q ss_pred cc
Q 008448 412 YR 413 (565)
Q Consensus 412 A~ 413 (565)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 140
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=82.48 E-value=0.48 Score=50.29 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=59.0
Q ss_pred ceEEEeCCCCCCCC-HHHHH--HHhhcCCCeeEEEeecCC-----CCc--EEEEEECCHHHHHHHHHccCCceeeeeEEE
Q 008448 339 RQIYLTFPAESTFT-EDDVS--NYFNTYGPVDDVRIPCQQ-----KRM--FGFVTFASADTVKMILAKGNPHFVCGARVL 408 (565)
Q Consensus 339 ~kIfVgn~L~~~~T-EedLr--~~Fs~fG~V~~V~I~~gk-----~RG--faFVtF~~~e~A~~Al~~lN~~~i~Gr~V~ 408 (565)
..+||-+ |+..+. |..|+ ++|.+||.|..|.+-... .-+ =++|||...|+|..+|...++...+|+.++
T Consensus 78 nlvyvvg-l~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVG-LPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhC-CCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4566666 665544 44444 799999999999876422 111 179999999999999999999999999977
Q ss_pred EEecccCcchh
Q 008448 409 VKPYREKSKLV 419 (565)
Q Consensus 409 Vk~A~~K~k~~ 419 (565)
......+--..
T Consensus 157 a~~gttkycs~ 167 (327)
T KOG2068|consen 157 ASLGTTKYCSF 167 (327)
T ss_pred HhhCCCcchhH
Confidence 77666654433
No 141
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=81.75 E-value=1.7 Score=49.40 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=61.1
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhh-cCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCcee---eeeEEEE
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFN-TYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV---CGARVLV 409 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs-~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i---~Gr~V~V 409 (565)
....++-|||.| |-.-||.-+|+++.. ..|.|++..|-. -|--+||+|.+.++|-+....|++... +++.|.|
T Consensus 440 R~~~SnvlhI~n-LvRPFTlgQLkelL~rtgg~Vee~WmDk--IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 440 RKEPSNVLHIDN-LVRPFTLGQLKELLGRTGGNVEEFWMDK--IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCccceEeeec-ccccchHHHHHHHHhhccCchHHHHHHH--hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 345668899999 999999999999999 677888875443 344689999999999999999877655 5666666
Q ss_pred Eecc
Q 008448 410 KPYR 413 (565)
Q Consensus 410 k~A~ 413 (565)
.+..
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 6554
No 142
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=77.26 E-value=0.75 Score=48.75 Aligned_cols=22 Identities=27% Similarity=0.857 Sum_probs=20.6
Q ss_pred ccceeccccccCCCCC-cccccc
Q 008448 184 KTCHYFNKGFCKHGSN-CRYYHG 205 (565)
Q Consensus 184 kpC~YF~rG~Ck~G~s-Crf~HG 205 (565)
-.|.-|.||.|++|.. |||+|=
T Consensus 38 eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 38 EVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHhccccCCCccccccCC
Confidence 4799999999999998 999997
No 143
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=76.47 E-value=1.2 Score=50.03 Aligned_cols=23 Identities=43% Similarity=1.051 Sum_probs=21.9
Q ss_pred cccceeccccccCCCCCcccccc
Q 008448 183 VKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 183 ~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
.-||-=|.||.|++|.+|.|.||
T Consensus 236 ~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 236 STPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred CccCcccccCCCCCCCccccccc
Confidence 56999999999999999999999
No 144
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=74.85 E-value=2.5 Score=48.51 Aligned_cols=74 Identities=8% Similarity=-0.003 Sum_probs=64.4
Q ss_pred CCCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 333 PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 333 ~~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
...+...++|||+ +...+..+-++.+...+|-|..+.... |||..|..+....+|+..+....++|..+.++.-
T Consensus 35 ~~~~~~~~vfv~~-~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 35 QPLPPRDTVFVGN-ISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred cCCCCCceeEecc-hhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3445668999999 999999999999999999988877654 9999999999999999998888899988887764
No 145
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=73.75 E-value=1.7 Score=28.86 Aligned_cols=20 Identities=30% Similarity=0.803 Sum_probs=17.2
Q ss_pred cceecccc-ccCCCCCcccccc
Q 008448 185 TCHYFNKG-FCKHGSNCRYYHG 205 (565)
Q Consensus 185 pC~YF~rG-~Ck~G~sCrf~HG 205 (565)
.|.|...| .|+. .+|.|.|-
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QHf 22 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQHF 22 (23)
T ss_pred CCccccCCCeeCC-CCCCcccc
Confidence 59999888 9986 89999984
No 146
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=70.97 E-value=1.4 Score=46.07 Aligned_cols=21 Identities=33% Similarity=1.159 Sum_probs=20.2
Q ss_pred cceeccccccCCCCCcccccc
Q 008448 185 TCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 185 pC~YF~rG~Ck~G~sCrf~HG 205 (565)
.|-+|..|.|..|..|+|.|+
T Consensus 94 vCafFk~g~C~KG~kCKFsHd 114 (343)
T KOG1763|consen 94 VCAFFKQGTCTKGDKCKFSHD 114 (343)
T ss_pred HHHHHhccCCCCCCcccccch
Confidence 599999999999999999999
No 147
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=70.92 E-value=1.9 Score=45.21 Aligned_cols=23 Identities=39% Similarity=0.791 Sum_probs=21.3
Q ss_pred cccceec-cccccCCCCCcccccc
Q 008448 183 VKTCHYF-NKGFCKHGSNCRYYHG 205 (565)
Q Consensus 183 ~kpC~YF-~rG~Ck~G~sCrf~HG 205 (565)
--||.|| ..|.|..|+.|.|.|.
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~ 157 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHI 157 (285)
T ss_pred CCCcccccccceeccCCCCCcccc
Confidence 3589999 8899999999999999
No 148
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=69.31 E-value=18 Score=31.59 Aligned_cols=56 Identities=20% Similarity=0.355 Sum_probs=42.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccC
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN 398 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN 398 (565)
..+-.||++ |......||.++|+.||.|.--.|- -.-|||...+.+.|..|+..++
T Consensus 8 RdHVFhltF--PkeWK~~DI~qlFspfG~I~VsWi~----dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLTF--PKEWKTSDIYQLFSPFGQIYVSWIN----DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE----TT--HHHHHHHCCCCCCEEEEEEC----TTEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEeC--chHhhhhhHHHHhccCCcEEEEEEc----CCcEEEEeecHHHHHHHHHHhc
Confidence 345677885 6777899999999999998766553 3479999999999999988764
No 149
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=68.02 E-value=6.8 Score=38.18 Aligned_cols=66 Identities=6% Similarity=0.079 Sum_probs=45.1
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhc-CCCe---eEEEeec-----C-CCCcEEEEEECCHHHHHHHHHccCCceeee
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNT-YGPV---DDVRIPC-----Q-QKRMFGFVTFASADTVKMILAKGNPHFVCG 404 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~-fG~V---~~V~I~~-----g-k~RGfaFVtF~~~e~A~~Al~~lN~~~i~G 404 (565)
..+|.|.+ ||..+||+++.+..+. +|.- ..+.-.. . ..-.-|+|.|.+.+++..-....+++.+.+
T Consensus 7 ~~KvVIR~-LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 7 GTKVVIRR-LPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp --EEEEEE-E-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CceEEEeC-CCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 45999999 9999999999997776 6666 2332111 1 112358999999999999999999887754
No 150
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=66.84 E-value=2.5 Score=42.74 Aligned_cols=21 Identities=43% Similarity=1.254 Sum_probs=18.4
Q ss_pred cceecc-ccccCCCCCcccccc
Q 008448 185 TCHYFN-KGFCKHGSNCRYYHG 205 (565)
Q Consensus 185 pC~YF~-rG~Ck~G~sCrf~HG 205 (565)
-|.||+ .|.|..|..|||+|.
T Consensus 208 ycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 208 YCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred EEEEecCCCcccCCceeeeecc
Confidence 388864 599999999999999
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=63.68 E-value=3.9 Score=42.90 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=64.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
...+.|+|+ +.+.+.+.+...++..+|.+..+.+.. ..++|++.|.|...+.+..++...-.+.+.++.+.....
T Consensus 87 ~~~~~f~g~-~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGE-LSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccc-cccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 467999999 999999998999999999888887774 568999999999999999999986445777776665544
Q ss_pred ccCc
Q 008448 413 REKS 416 (565)
Q Consensus 413 ~~K~ 416 (565)
..+.
T Consensus 166 ~~~~ 169 (285)
T KOG4210|consen 166 TRRG 169 (285)
T ss_pred cccc
Confidence 4433
No 152
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=62.00 E-value=24 Score=29.20 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=38.9
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhcCCCee-----EEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 340 QIYLTFPAESTFTEDDVSNYFNTYGPVD-----DVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 340 kIfVgn~L~~~~TEedLr~~Fs~fG~V~-----~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
++||.---...++..+|-.++..-+.|. +|+|. ..|.||.-.. +.|..+++.+++..+.|++|.|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3454321235688889999998775544 56664 3589998765 4788899999999999999999875
No 153
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=61.78 E-value=3.5 Score=43.42 Aligned_cols=25 Identities=44% Similarity=0.990 Sum_probs=21.5
Q ss_pred CCcccceeccc-cccCC-CCCcccccc
Q 008448 181 LPVKTCHYFNK-GFCKH-GSNCRYYHG 205 (565)
Q Consensus 181 ~~~kpC~YF~r-G~Ck~-G~sCrf~HG 205 (565)
+.-..|.+|.+ |.|+. |.+|||.||
T Consensus 130 ~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 130 YKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred ccCCcceeeecCccccccCchhhhcCC
Confidence 45567988877 99999 999999999
No 154
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=60.60 E-value=30 Score=36.44 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=29.3
Q ss_pred CCCcceEEEeCCCCC------------CCCHHHHHHHhhcCCCeeEEEee
Q 008448 335 VTGSRQIYLTFPAES------------TFTEDDVSNYFNTYGPVDDVRIP 372 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~------------~~TEedLr~~Fs~fG~V~~V~I~ 372 (565)
+..+.|||+.+ +|- --+|+-|+..|..||.|..|.|+
T Consensus 146 gerpdti~la~-ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 146 GERPDTIHLAG-IPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCCceeecC-CcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 34556788877 552 15688999999999999999998
No 155
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=58.44 E-value=3.7 Score=43.91 Aligned_cols=26 Identities=31% Similarity=1.027 Sum_probs=23.6
Q ss_pred cCCcccceeccccccCCCCCcccccc
Q 008448 180 ELPVKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 180 ~~~~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
+-.-+-|.+|.+|||.+|.+|++.|.
T Consensus 131 qt~~k~c~~~~~g~c~~g~~c~~~h~ 156 (325)
T KOG1040|consen 131 QTAIKKCKWYKEGFCRGGPSCKKRHE 156 (325)
T ss_pred hhhhhccchhhhccCCCcchhhhhhh
Confidence 34568999999999999999999998
No 156
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=57.51 E-value=67 Score=26.63 Aligned_cols=56 Identities=14% Similarity=0.264 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 349 STFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 349 ~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
..++-++++.-+..|+- .+|..- ..|| ||.|.+..+|++....-|+..+.+.++.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~~I~~d---~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-DRIRDD---RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc-ceEEec---CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56789999999999974 333322 3465 89999999999999999999888877654
No 157
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=56.74 E-value=18 Score=41.14 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=52.1
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhc--CCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccC--CceeeeeEEEE
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNT--YGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN--PHFVCGARVLV 409 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~--fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN--~~~i~Gr~V~V 409 (565)
..|.|.|-.=++.++-+|+|+.+|.. +-++.+|..-.+ - --||||++..+|+.|.+-+- -..|-|+.|..
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~-nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--D-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--C-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 44666665558999999999999964 788888887652 2 36999999999999987552 34556666543
No 158
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=53.55 E-value=5.1 Score=40.04 Aligned_cols=24 Identities=25% Similarity=0.816 Sum_probs=19.2
Q ss_pred Cccccee-ccccccCCCCCcccccc
Q 008448 182 PVKTCHY-FNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 182 ~~kpC~Y-F~rG~Ck~G~sCrf~HG 205 (565)
-...|+= =..|||..|.+|+|+|-
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred CcccccchhhcccccCCchhhhhhh
Confidence 3456764 45699999999999998
No 159
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=53.10 E-value=17 Score=29.48 Aligned_cols=67 Identities=33% Similarity=0.548 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHhcCCC--CccccCCchhHHHhhhhhhhcCcccchhccccCCCc-hHHHHHHHhhcccccccCCCCch
Q 008448 234 LEKLELEIIELLKARRGN--PISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGY-SLTKLLARLKNSVRLIDRPHGQH 310 (565)
Q Consensus 234 l~~le~ei~ell~~~~~~--~~~~~~lP~~yfe~~g~~Lq~~~~~~esqR~gkaGy-~~~klla~lqn~i~~idr~~gq~ 310 (565)
++.+..+|.+++.+.+.. .+.+..++..|...| ..+... .=|| +|..++..+.+.+.+.++++|.+
T Consensus 3 ~~~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~-~~f~~~----------~yG~~~l~~ll~~~~~~~~i~~~~~g~~ 71 (74)
T PF12872_consen 3 LEELKKLLRELLESQKGEDGWVSLSQLGQEYKKKY-PDFDPR----------DYGFSSLSELLESLPDVVEIEERQHGGQ 71 (74)
T ss_dssp -HHHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHH-TT--TC----------CTTSSSHHHHHHT-TTTEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHC-CCCCcc----------ccCCCcHHHHHHhCCCeEEEeeeCCCCc
Confidence 567788899999766543 577666777766655 433322 1266 57888866667666767766665
Q ss_pred h
Q 008448 311 A 311 (565)
Q Consensus 311 ~ 311 (565)
.
T Consensus 72 ~ 72 (74)
T PF12872_consen 72 V 72 (74)
T ss_dssp -
T ss_pred C
Confidence 4
No 160
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=46.52 E-value=8.3 Score=41.32 Aligned_cols=26 Identities=27% Similarity=0.770 Sum_probs=23.1
Q ss_pred cCCcccceeccccccCCCCCcccccc
Q 008448 180 ELPVKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 180 ~~~~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
..+-..|+|+.+|.|+.|..|-|.|-
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 34567899999999999999999998
No 161
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=44.90 E-value=15 Score=43.64 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=62.6
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCcee--eeeEEEEEecc
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV--CGARVLVKPYR 413 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i--~Gr~V~Vk~A~ 413 (565)
|.-.+.++.| ..-..+..-|..+|++||.|.+.+..++ -..|.|.|...+.|-.|++.+.+..+ -|.+.+|..|+
T Consensus 296 plqp~~~~~n-n~v~~tSssL~~l~s~yg~v~s~wtlr~--~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 296 PLQPKQSLEN-NAVNLTSSSLATLCSDYGSVASAWTLRD--LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred cCcchhhhhc-ccccchHHHHHHHHHhhcchhhheeccc--ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3446677777 7778899999999999999999998763 34799999999999999998876544 57788888877
Q ss_pred cC
Q 008448 414 EK 415 (565)
Q Consensus 414 ~K 415 (565)
.-
T Consensus 373 ~~ 374 (1007)
T KOG4574|consen 373 TL 374 (1007)
T ss_pred cc
Confidence 54
No 162
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=43.34 E-value=9.2 Score=38.79 Aligned_cols=20 Identities=50% Similarity=1.129 Sum_probs=18.5
Q ss_pred cceeccccccCCCCCcccccc
Q 008448 185 TCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 185 pC~YF~rG~Ck~G~sCrf~HG 205 (565)
.|.||--|-|.| -+|||+|-
T Consensus 263 acryfllgkcnn-pncryvhi 282 (377)
T KOG1492|consen 263 ACRYFLLGKCNN-PNCRYVHI 282 (377)
T ss_pred hhhhhhhccCCC-CCceEEEE
Confidence 499999999998 78999998
No 163
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=41.48 E-value=1.4e+02 Score=27.17 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=47.6
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCC-CeeEEEeec-CC-CCcEEEEEECCHHHHHHHHHccCCceee
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYG-PVDDVRIPC-QQ-KRMFGFVTFASADTVKMILAKGNPHFVC 403 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG-~V~~V~I~~-gk-~RGfaFVtF~~~e~A~~Al~~lN~~~i~ 403 (565)
..+-+.. +++-++-++|..+.+.+- .|..++|+. +. +|=.+.++|.+.+.|..-....||..++
T Consensus 14 ~~~~l~v-p~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAV-PPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEe-CcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3455555 777777788877766664 566788885 33 4546899999999999999999887664
No 164
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=40.64 E-value=40 Score=27.77 Aligned_cols=19 Identities=11% Similarity=0.478 Sum_probs=17.1
Q ss_pred HHHHHHhhcCCCeeEEEee
Q 008448 354 DDVSNYFNTYGPVDDVRIP 372 (565)
Q Consensus 354 edLr~~Fs~fG~V~~V~I~ 372 (565)
.+||++|++.|+|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6799999999999988776
No 165
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=38.28 E-value=15 Score=39.31 Aligned_cols=23 Identities=39% Similarity=0.821 Sum_probs=19.8
Q ss_pred CcccceeccccccCCCCCcccccc
Q 008448 182 PVKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 182 ~~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
-+--|+=|.+|.|.+ .+|||+|.
T Consensus 70 ~v~aC~Ds~kgrCsR-~nCkylHp 92 (331)
T KOG2494|consen 70 RVIACFDSQKGRCSR-ENCKYLHP 92 (331)
T ss_pred eEEEEeccccCccCc-ccceecCC
Confidence 345799999999999 55999999
No 166
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=33.69 E-value=8.4 Score=39.21 Aligned_cols=56 Identities=32% Similarity=0.504 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCce
Q 008448 346 PAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHF 401 (565)
Q Consensus 346 ~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~ 401 (565)
+|...++++.+...|+.-|++..+++.+ |+++.++||++.-...+-.++....+..
T Consensus 91 pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 91 PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 4777899999999999999999999996 7899999999988877777776544333
No 167
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=33.14 E-value=15 Score=37.78 Aligned_cols=21 Identities=33% Similarity=0.958 Sum_probs=19.9
Q ss_pred cceeccccccCCCCCcccccc
Q 008448 185 TCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 185 pC~YF~rG~Ck~G~sCrf~HG 205 (565)
.|-.|.-|.|..|..|+|+||
T Consensus 87 vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 87 VCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHhccCccccCchhhhhcc
Confidence 499999999999999999999
No 168
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=32.96 E-value=20 Score=37.72 Aligned_cols=23 Identities=35% Similarity=1.031 Sum_probs=21.6
Q ss_pred cccceeccccccCCCCCcccccc
Q 008448 183 VKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 183 ~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
--+|++|-.|.|+.|-.|.|+|+
T Consensus 104 ~V~c~~~~~g~c~s~~~c~~lh~ 126 (285)
T COG5084 104 SVVCKFFLRGLCKSGFSCEFLHE 126 (285)
T ss_pred CcccchhccccCcCCCccccccC
Confidence 45899999999999999999999
No 169
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=32.51 E-value=36 Score=35.51 Aligned_cols=39 Identities=23% Similarity=0.180 Sum_probs=28.5
Q ss_pred EEEEECCHHHHHHHHHccCCceeeeeEEEEEecccCcchhh
Q 008448 380 GFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD 420 (565)
Q Consensus 380 aFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K~k~~~ 420 (565)
|||||++..+|..|++... ...++.+.|..|.+..+..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~--~~~~~~~~v~~APeP~DI~W 39 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL--SKRPNSWRVSPAPEPDDIIW 39 (325)
T ss_pred CEEEECCHHHHHHHHHHHh--cCCCCCceEeeCCCcccccc
Confidence 7999999999999998642 22345568888876665543
No 170
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.05 E-value=1.3e+02 Score=34.91 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=56.4
Q ss_pred CCCcceEEEeCCCCCC-CCHHHHHHHhhcC----CCeeEEEeec--------------CC-------------C------
Q 008448 335 VTGSRQIYLTFPAEST-FTEDDVSNYFNTY----GPVDDVRIPC--------------QQ-------------K------ 376 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~-~TEedLr~~Fs~f----G~V~~V~I~~--------------gk-------------~------ 376 (565)
+...++|-|-| +.|+ +.-++|--+|..| |.|..|.|-. |. +
T Consensus 171 ~~~T~RLAVvN-MDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVN-MDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEec-cccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 45678999999 9985 6779999888776 6999998862 21 0
Q ss_pred ---------C---------cEEEEEECCHHHHHHHHHccCCceeeeeEE
Q 008448 377 ---------R---------MFGFVTFASADTVKMILAKGNPHFVCGARV 407 (565)
Q Consensus 377 ---------R---------GfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V 407 (565)
| =||.|+|.+.++|.++++.-+|..+...-.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~ 298 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSAN 298 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccc
Confidence 1 169999999999999999998888765433
No 171
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=29.71 E-value=24 Score=37.51 Aligned_cols=27 Identities=30% Similarity=0.849 Sum_probs=23.1
Q ss_pred ccCCcccceeccc-cccCCCCCcccccc
Q 008448 179 AELPVKTCHYFNK-GFCKHGSNCRYYHG 205 (565)
Q Consensus 179 ~~~~~kpC~YF~r-G~Ck~G~sCrf~HG 205 (565)
..|--+||.-..+ |||.-|..|.|.||
T Consensus 270 ~~frTePcinwe~sGyc~yg~Rc~F~hg 297 (351)
T COG5063 270 QNFRTEPCINWEKSGYCPYGLRCCFKHG 297 (351)
T ss_pred cccccCCccchhhcccCccccccccccC
Confidence 3455689998776 99999999999999
No 172
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.06 E-value=21 Score=37.82 Aligned_cols=25 Identities=24% Similarity=0.776 Sum_probs=20.0
Q ss_pred CCccccee-ccccccCCCCCcccccc
Q 008448 181 LPVKTCHY-FNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 181 ~~~kpC~Y-F~rG~Ck~G~sCrf~HG 205 (565)
+...+|+= =..|||..|-+|+|+|-
T Consensus 184 ~qpDicKdykeTgycg~gdSckFlh~ 209 (313)
T KOG1813|consen 184 YQPDICKDYKETGYCGYGDSCKFLHD 209 (313)
T ss_pred cCchhhhhhHhhCcccccchhhhhhh
Confidence 34567874 45699999999999997
No 173
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.83 E-value=1e+02 Score=32.67 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCC
Q 008448 464 EQEQAFELERRRLAELQLVRKPMPNP 489 (565)
Q Consensus 464 ~~~q~lE~q~rrL~~lql~~k~~~~~ 489 (565)
+.+++|+++.|++..+.+..++-|-+
T Consensus 78 Rke~ELdRREr~~a~~g~~~~~nNWP 103 (313)
T KOG3088|consen 78 RKEQELDRRERALARAGIVIRENNWP 103 (313)
T ss_pred HHHHHHhHHHHHHhhccCcccccCCC
Confidence 33466666666777765655553333
No 174
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=22.70 E-value=27 Score=35.88 Aligned_cols=30 Identities=23% Similarity=0.686 Sum_probs=20.9
Q ss_pred HHHhhhhhhhcCcccchhccccCC-CchHHHHH
Q 008448 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLL 293 (565)
Q Consensus 262 yfe~~g~~Lq~~~~~~esqR~gka-Gy~~~kll 293 (565)
|||.||.++.+.. +...-.|+. ||+|+.+.
T Consensus 32 yFeqfGeI~eavv--itd~~t~rskGyGfVTf~ 62 (247)
T KOG0149|consen 32 YFEQFGEIVEAVV--ITDKNTGRSKGYGFVTFR 62 (247)
T ss_pred HHHHhCceEEEEE--EeccCCccccceeeEEee
Confidence 9999999998753 233334555 89987654
No 175
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=22.53 E-value=1.1e+02 Score=26.79 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=23.1
Q ss_pred EEEEECCHHHHHHHHHccC-CceeeeeEE--EEEecc
Q 008448 380 GFVTFASADTVKMILAKGN-PHFVCGARV--LVKPYR 413 (565)
Q Consensus 380 aFVtF~~~e~A~~Al~~lN-~~~i~Gr~V--~Vk~A~ 413 (565)
|.|||.+++.|++.+.... ...+++..+ .|+++.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~ 37 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVT 37 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEe
Confidence 6899999999999998752 233444444 444443
No 176
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=21.57 E-value=1.3e+02 Score=32.10 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=39.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHH
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASAD 388 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e 388 (565)
...-|||+| |+.++.-.||+....+-|.+ -.+|..+-++|-+|+.|-+..
T Consensus 329 ~~~di~~~n-l~rd~rv~dlk~~lr~~~~~-pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTN-LSRDIRVKDLKSELRKRECT-PMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeecc-CccccchHHHHHHHHhcCCC-ceeEeeecCCcceeEecCCcc
Confidence 446799999 99999999999999888753 334444557889999998764
No 177
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.10 E-value=44 Score=36.21 Aligned_cols=26 Identities=46% Similarity=1.014 Sum_probs=23.5
Q ss_pred cCCcccceeccc--cccCCCCCcccccc
Q 008448 180 ELPVKTCHYFNK--GFCKHGSNCRYYHG 205 (565)
Q Consensus 180 ~~~~kpC~YF~r--G~Ck~G~sCrf~HG 205 (565)
+-.-|+|.||.+ |.|..|+.|-|.|-
T Consensus 246 ~~s~~~c~yf~~~~g~cPf~s~~~y~h~ 273 (344)
T KOG1039|consen 246 EMSAKDCKYFSQGLGSCPFGSKCFYKHL 273 (344)
T ss_pred HhhccchhhhcCCCCCCCCCCccccccc
Confidence 457799999998 79999999999998
No 178
>PHA02887 EGF-like protein; Provisional
Probab=20.07 E-value=43 Score=30.98 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.8
Q ss_pred cccceeccccccCCCCCcccccc
Q 008448 183 VKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 183 ~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
..||.=-.++||-|| .|+|.+.
T Consensus 83 f~pC~~eyk~YCiHG-~C~yI~d 104 (126)
T PHA02887 83 FEKCKNDFNDFCING-ECMNIID 104 (126)
T ss_pred ccccChHhhCEeeCC-EEEcccc
Confidence 479999999999998 9999887
Done!