Query 008448
Match_columns 565
No_of_seqs 378 out of 1642
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 03:48:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1l_A PRE-mRNA-splicing facto 99.9 1.6E-24 5.4E-29 216.4 7.9 91 328-421 124-235 (240)
2 4fxv_A ELAV-like protein 1; RN 99.7 1.4E-17 4.7E-22 143.6 9.5 77 337-414 18-98 (99)
3 4f25_A Polyadenylate-binding p 99.7 2.4E-17 8.3E-22 145.1 8.9 82 337-419 4-87 (115)
4 3s8s_A Histone-lysine N-methyl 99.7 7.8E-17 2.7E-21 141.7 11.2 82 336-418 4-89 (110)
5 2lxi_A RNA-binding protein 10; 99.7 1.9E-17 6.4E-22 140.4 6.8 80 338-418 1-86 (91)
6 1whw_A Hypothetical protein ri 99.7 2.5E-16 8.4E-21 133.8 11.8 82 336-418 6-91 (99)
7 3md1_A Nuclear and cytoplasmic 99.7 1.5E-16 5.2E-21 130.4 9.5 77 339-416 2-82 (83)
8 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.2E-16 4.2E-21 132.1 8.7 79 336-415 4-86 (87)
9 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.6E-16 5.5E-21 130.8 9.4 79 334-413 3-85 (85)
10 4f02_A Polyadenylate-binding p 99.7 5.4E-18 1.8E-22 163.6 0.5 84 337-421 102-187 (213)
11 2dgs_A DAZ-associated protein 99.7 2.7E-16 9.3E-21 133.7 10.8 83 334-418 6-92 (99)
12 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.8E-16 6.2E-21 135.3 9.4 85 333-418 7-95 (102)
13 2dnz_A Probable RNA-binding pr 99.7 2.5E-16 8.7E-21 132.5 10.1 82 336-418 3-88 (95)
14 2e5h_A Zinc finger CCHC-type a 99.7 5.9E-16 2E-20 130.0 12.3 80 333-413 11-94 (94)
15 2cq3_A RNA-binding protein 9; 99.7 5.2E-16 1.8E-20 132.9 12.1 84 335-419 12-97 (103)
16 2cq0_A Eukaryotic translation 99.7 2.9E-16 1E-20 134.4 10.5 83 335-418 12-98 (103)
17 2x1f_A MRNA 3'-END-processing 99.7 3.6E-16 1.2E-20 132.4 10.9 82 338-420 2-87 (96)
18 1x5u_A Splicing factor 3B subu 99.7 4.4E-16 1.5E-20 133.6 11.1 83 335-418 12-98 (105)
19 1x4h_A RNA-binding protein 28; 99.7 5.6E-16 1.9E-20 134.0 11.8 83 335-418 12-104 (111)
20 2cpf_A RNA binding motif prote 99.7 2.4E-16 8.3E-21 133.6 9.2 82 336-418 3-91 (98)
21 1x5t_A Splicing factor 3B subu 99.7 2E-16 6.8E-21 133.4 8.6 83 336-419 3-90 (96)
22 2e5j_A Methenyltetrahydrofolat 99.7 2E-16 7E-21 134.4 8.7 82 334-417 15-96 (97)
23 2do4_A Squamous cell carcinoma 99.7 3.6E-16 1.2E-20 133.2 10.2 81 336-417 15-98 (100)
24 2dgo_A Cytotoxic granule-assoc 99.7 4.7E-16 1.6E-20 135.7 11.1 84 335-419 12-99 (115)
25 1x4a_A Splicing factor, argini 99.7 6.6E-16 2.2E-20 133.8 11.7 83 335-418 19-102 (109)
26 2cqi_A Nucleolysin TIAR; RNA r 99.6 7.2E-16 2.5E-20 132.0 11.8 82 335-417 12-95 (103)
27 2dnm_A SRP46 splicing factor; 99.6 2.4E-16 8E-21 135.0 8.7 83 335-418 10-96 (103)
28 4a8x_A RNA-binding protein wit 99.6 4.7E-16 1.6E-20 128.6 9.7 79 337-416 3-86 (88)
29 2jvr_A Nucleolar protein 3; RN 99.6 3.7E-16 1.3E-20 138.4 9.5 82 334-416 24-106 (111)
30 3ns6_A Eukaryotic translation 99.6 8.6E-17 3E-21 138.2 5.1 81 337-418 5-96 (100)
31 1sjq_A Polypyrimidine tract-bi 99.6 2.4E-16 8.2E-21 138.8 7.9 82 335-419 13-96 (105)
32 2cqc_A Arginine/serine-rich sp 99.6 8E-16 2.7E-20 129.2 10.6 80 334-414 11-94 (95)
33 1x5s_A Cold-inducible RNA-bind 99.6 3.7E-16 1.3E-20 133.4 8.7 84 333-417 7-94 (102)
34 1nu4_A U1A RNA binding domain; 99.6 3.2E-16 1.1E-20 132.3 8.1 85 336-421 6-95 (97)
35 2dnh_A Bruno-like 5, RNA bindi 99.6 6.8E-16 2.3E-20 132.4 10.1 83 335-418 12-100 (105)
36 2dgx_A KIAA0430 protein; RRM d 99.6 9.8E-16 3.4E-20 130.3 10.7 81 336-417 7-92 (96)
37 3p5t_L Cleavage and polyadenyl 99.6 9E-17 3.1E-21 135.0 4.2 79 339-418 2-86 (90)
38 1s79_A Lupus LA protein; RRM, 99.6 2.9E-16 1E-20 136.6 7.5 77 337-415 10-89 (103)
39 2cpz_A CUG triplet repeat RNA- 99.6 4.7E-16 1.6E-20 135.9 8.8 83 335-418 22-108 (115)
40 2d9p_A Polyadenylate-binding p 99.6 6.1E-16 2.1E-20 132.4 9.3 82 336-418 13-96 (103)
41 1oo0_B CG8781-PA, drosophila Y 99.6 7.6E-16 2.6E-20 133.4 9.9 81 336-417 24-108 (110)
42 2wbr_A GW182, gawky, LD47780P; 99.6 6.6E-16 2.3E-20 132.1 9.3 75 336-413 5-79 (89)
43 2dgv_A HnRNP M, heterogeneous 99.6 4.6E-16 1.6E-20 130.2 8.2 81 336-417 6-88 (92)
44 1p27_B RNA-binding protein 8A; 99.6 4.7E-16 1.6E-20 133.6 8.5 81 336-417 21-105 (106)
45 2lkz_A RNA-binding protein 5; 99.6 2.8E-16 9.6E-21 135.1 7.0 77 337-414 8-94 (95)
46 2cph_A RNA binding motif prote 99.6 1.2E-15 4.1E-20 131.0 10.9 83 335-418 12-100 (107)
47 2err_A Ataxin-2-binding protei 99.6 6.6E-16 2.2E-20 134.7 9.2 81 335-416 26-108 (109)
48 3ucg_A Polyadenylate-binding p 99.6 8.5E-16 2.9E-20 127.5 9.4 77 338-416 6-86 (89)
49 2a3j_A U1 small nuclear ribonu 99.6 5.6E-16 1.9E-20 140.2 9.0 86 335-421 26-116 (127)
50 2dnq_A RNA-binding protein 4B; 99.6 1.1E-15 3.8E-20 127.9 9.8 79 335-418 5-83 (90)
51 2dgp_A Bruno-like 4, RNA bindi 99.6 1E-15 3.4E-20 131.5 9.7 82 335-417 10-98 (106)
52 1why_A Hypothetical protein ri 99.6 1E-15 3.5E-20 129.8 9.6 79 336-417 15-95 (97)
53 2ytc_A PRE-mRNA-splicing facto 99.6 1.8E-15 6E-20 124.8 10.6 76 335-413 9-85 (85)
54 2nlw_A Eukaryotic translation 99.6 9.7E-16 3.3E-20 132.6 9.4 80 337-417 14-102 (105)
55 2do0_A HnRNP M, heterogeneous 99.6 1.6E-15 5.5E-20 131.9 10.8 83 335-418 12-97 (114)
56 3r27_A HnRNP L, heterogeneous 99.6 1.1E-15 3.8E-20 133.4 9.7 81 333-416 16-98 (100)
57 2rs2_A Musashi-1, RNA-binding 99.6 1.4E-15 4.8E-20 132.7 10.4 81 335-417 22-106 (109)
58 1p1t_A Cleavage stimulation fa 99.6 6.9E-16 2.4E-20 131.9 8.2 84 337-421 7-94 (104)
59 2div_A TRNA selenocysteine ass 99.6 9.7E-16 3.3E-20 130.1 8.9 82 335-417 6-96 (99)
60 2ywk_A Putative RNA-binding pr 99.6 8.7E-16 3E-20 129.2 8.5 78 336-414 14-94 (95)
61 2jrs_A RNA-binding protein 39; 99.6 8.2E-16 2.8E-20 134.2 8.6 81 335-416 23-107 (108)
62 3s7r_A Heterogeneous nuclear r 99.6 1.7E-15 5.8E-20 125.6 10.1 75 336-412 9-87 (87)
63 2cpi_A CCR4-NOT transcription 99.6 7.2E-16 2.5E-20 134.7 8.1 79 337-416 14-102 (111)
64 2la4_A Nuclear and cytoplasmic 99.6 7.9E-16 2.7E-20 131.3 8.2 76 337-415 26-101 (101)
65 2dh8_A DAZ-associated protein 99.6 7.6E-16 2.6E-20 132.3 8.1 83 335-419 13-99 (105)
66 2ad9_A Polypyrimidine tract-bi 99.6 8.6E-16 2.9E-20 138.0 8.7 84 333-419 26-111 (119)
67 2cq1_A PTB-like protein L; RRM 99.6 1.8E-15 6.2E-20 131.6 10.3 81 335-418 12-94 (101)
68 1wi8_A EIF-4B, eukaryotic tran 99.6 2.6E-15 8.8E-20 129.0 11.1 80 336-418 13-97 (104)
69 2dng_A Eukaryotic translation 99.6 1.9E-15 6.6E-20 129.5 10.4 81 335-418 12-96 (103)
70 2kxn_B Transformer-2 protein h 99.6 1E-15 3.5E-20 138.0 9.0 82 335-417 43-128 (129)
71 3n9u_C Cleavage and polyadenyl 99.6 1E-15 3.5E-20 142.7 9.3 81 337-418 54-140 (156)
72 1l3k_A Heterogeneous nuclear r 99.6 2.5E-16 8.6E-21 147.3 5.1 84 336-421 102-189 (196)
73 1x4c_A Splicing factor, argini 99.6 4.3E-15 1.5E-19 129.0 12.4 79 336-418 13-96 (108)
74 2mss_A Protein (musashi1); RNA 99.6 6.1E-16 2.1E-20 124.8 6.6 71 340-412 1-75 (75)
75 1x4d_A Matrin 3; structural ge 99.6 8.8E-16 3E-20 134.1 8.0 79 336-417 13-94 (102)
76 2dgt_A RNA-binding protein 30; 99.6 3.3E-15 1.1E-19 125.5 11.2 79 335-418 7-85 (92)
77 2fy1_A RNA-binding motif prote 99.6 1.5E-15 5.1E-20 134.1 9.5 81 337-418 6-89 (116)
78 1u6f_A Tcubp1, RNA-binding pro 99.6 1.6E-15 5.4E-20 136.6 9.8 83 335-418 39-125 (139)
79 2cqd_A RNA-binding region cont 99.6 3.7E-15 1.3E-19 130.4 11.8 81 336-418 15-99 (116)
80 2kt5_A RNA and export factor-b 99.6 3.7E-15 1.3E-19 132.1 11.8 83 334-417 31-116 (124)
81 2dgw_A Probable RNA-binding pr 99.6 2.8E-15 9.7E-20 125.5 10.5 79 336-417 8-89 (91)
82 2dgu_A Heterogeneous nuclear r 99.6 2E-15 6.9E-20 129.6 9.8 79 336-419 9-87 (103)
83 2cqp_A RNA-binding protein 12; 99.6 1.3E-15 4.6E-20 129.0 8.4 81 335-416 12-96 (98)
84 2khc_A Testis-specific RNP-typ 99.6 1.9E-15 6.4E-20 132.5 9.5 78 335-413 37-118 (118)
85 2cpe_A RNA-binding protein EWS 99.6 2.6E-15 9E-20 130.5 10.4 82 336-418 13-106 (113)
86 2la6_A RNA-binding protein FUS 99.6 1.5E-15 5.3E-20 129.2 8.7 79 334-413 9-99 (99)
87 1x4b_A Heterogeneous nuclear r 99.6 2.1E-15 7.1E-20 132.0 9.6 80 337-418 26-109 (116)
88 2dis_A Unnamed protein product 99.6 1.8E-15 6.1E-20 130.6 9.0 82 336-418 6-95 (109)
89 3ex7_B RNA-binding protein 8A; 99.6 1.7E-15 5.9E-20 134.2 9.1 84 335-419 19-106 (126)
90 1wg5_A Heterogeneous nuclear r 99.6 2.8E-15 9.7E-20 129.4 10.2 79 336-416 13-95 (104)
91 2cpj_A Non-POU domain-containi 99.6 2.2E-15 7.5E-20 128.3 9.4 80 335-417 12-91 (99)
92 2fc9_A NCL protein; structure 99.6 3E-15 1E-19 127.7 10.2 83 334-417 11-93 (101)
93 2cpx_A Hypothetical protein FL 99.6 1.6E-15 5.5E-20 132.1 8.6 83 335-418 22-108 (115)
94 3lqv_A PRE-mRNA branch site pr 99.6 1.8E-15 6.1E-20 132.0 8.9 80 336-416 6-86 (115)
95 2cq4_A RNA binding motif prote 99.6 1.1E-15 3.8E-20 133.3 7.4 79 337-417 24-106 (114)
96 2dhg_A TRNA selenocysteine ass 99.6 1.5E-15 5E-20 130.1 8.0 82 336-418 7-93 (104)
97 2cpy_A RNA-binding protein 12; 99.6 2.4E-15 8.1E-20 132.0 9.4 82 335-418 12-97 (114)
98 3ulh_A THO complex subunit 4; 99.6 3E-15 1E-19 128.8 9.8 78 335-413 26-106 (107)
99 1x4g_A Nucleolysin TIAR; struc 99.6 2.6E-15 8.8E-20 130.2 9.4 79 337-418 24-102 (109)
100 2j76_E EIF-4B, EIF4B, eukaryot 99.6 8.2E-16 2.8E-20 131.7 6.1 78 336-416 17-99 (100)
101 1wex_A Hypothetical protein (r 99.6 2.8E-15 9.5E-20 131.0 9.6 80 335-417 12-93 (104)
102 2xnq_A Nuclear polyadenylated 99.6 3.9E-15 1.3E-19 127.3 10.2 78 334-416 18-96 (97)
103 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 5.1E-15 1.7E-19 132.6 11.3 78 334-412 59-140 (140)
104 2cqg_A TDP-43, TAR DNA-binding 99.6 5.8E-15 2E-19 126.3 11.2 80 336-418 13-96 (103)
105 3d2w_A TAR DNA-binding protein 99.6 3.2E-15 1.1E-19 126.2 9.2 79 335-417 8-86 (89)
106 2dnp_A RNA-binding protein 14; 99.6 4.1E-15 1.4E-19 124.5 9.6 77 336-417 7-83 (90)
107 2krb_A Eukaryotic translation 99.6 1.2E-15 4.1E-20 125.5 6.2 71 338-409 1-80 (81)
108 2kn4_A Immunoglobulin G-bindin 99.6 3.3E-15 1.1E-19 137.1 9.8 82 336-418 68-153 (158)
109 1x4e_A RNA binding motif, sing 99.6 8.9E-16 3.1E-20 126.8 5.4 77 336-413 3-83 (85)
110 2ki2_A SS-DNA binding protein 99.6 5.3E-16 1.8E-20 129.5 4.1 78 339-418 2-83 (90)
111 1h2v_Z 20 kDa nuclear CAP bind 99.6 4E-15 1.4E-19 136.9 10.3 84 334-418 35-122 (156)
112 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.1E-15 3.6E-20 123.6 5.6 73 339-413 1-77 (77)
113 2cpd_A Apobec-1 stimulating pr 99.6 1.2E-14 4.2E-19 123.6 11.9 78 335-417 12-91 (99)
114 2m2b_A RNA-binding protein 10; 99.6 1.2E-15 4E-20 137.1 5.8 81 336-418 21-111 (131)
115 2ek1_A RNA-binding protein 12; 99.6 1.4E-15 4.9E-20 127.9 6.0 77 336-413 13-93 (95)
116 2jwn_A Embryonic polyadenylate 99.6 3.7E-15 1.3E-19 131.7 8.8 78 338-417 36-117 (124)
117 2jvo_A Nucleolar protein 3; nu 99.6 4.5E-15 1.5E-19 129.6 9.1 77 336-417 29-105 (108)
118 2kvi_A Nuclear polyadenylated 99.6 3.1E-15 1E-19 127.0 7.7 78 336-418 8-86 (96)
119 2cqh_A IGF-II mRNA-binding pro 99.6 2.1E-15 7E-20 126.8 6.5 79 336-418 6-86 (93)
120 1x5p_A Negative elongation fac 99.6 1.7E-14 5.9E-19 122.5 12.2 78 336-418 13-90 (97)
121 2hvz_A Splicing factor, argini 99.6 2.1E-15 7.1E-20 128.7 6.2 78 339-418 1-78 (101)
122 1fjc_A Nucleolin RBD2, protein 99.6 3.2E-15 1.1E-19 126.2 7.2 80 336-417 14-93 (96)
123 1whx_A Hypothetical protein ri 99.6 4.4E-15 1.5E-19 130.1 8.4 77 337-416 9-85 (111)
124 1x4f_A Matrin 3; structural ge 99.6 3.3E-15 1.1E-19 132.8 7.6 81 335-418 22-105 (112)
125 2db1_A Heterogeneous nuclear r 99.6 2.9E-15 9.9E-20 132.7 7.0 79 336-416 15-99 (118)
126 2dnn_A RNA-binding protein 12; 99.6 6.5E-15 2.2E-19 129.8 9.2 76 337-415 15-93 (109)
127 2i2y_A Fusion protein consists 99.6 6E-15 2E-19 134.9 9.2 80 335-416 70-149 (150)
128 3md3_A Nuclear and cytoplasmic 99.6 1.6E-15 5.3E-20 137.4 5.2 79 335-414 84-166 (166)
129 1wel_A RNA-binding protein 12; 99.6 1.8E-15 6.3E-20 134.4 5.5 81 335-417 22-106 (124)
130 2hgl_A HNRPF protein, heteroge 99.6 3.2E-15 1.1E-19 136.9 7.0 79 336-416 42-126 (136)
131 2lea_A Serine/arginine-rich sp 99.6 2.4E-15 8.4E-20 136.4 6.1 83 336-419 45-131 (135)
132 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.6E-15 2.3E-19 137.2 9.1 84 336-420 70-157 (165)
133 1wez_A HnRNP H', FTP-3, hetero 99.6 6.2E-15 2.1E-19 127.6 8.0 80 335-417 12-94 (102)
134 3egn_A RNA-binding protein 40; 99.6 5.1E-15 1.8E-19 134.3 7.8 84 335-419 42-134 (143)
135 2lmi_A GRSF-1, G-rich sequence 99.6 2.6E-15 8.8E-20 130.3 5.6 79 336-416 9-93 (107)
136 1fj7_A Nucleolin RBD1, protein 99.6 1.6E-15 5.6E-20 129.3 4.2 80 336-418 15-98 (101)
137 1iqt_A AUF1, heterogeneous nuc 99.5 2.1E-15 7E-20 121.5 4.2 71 340-412 1-75 (75)
138 1wf1_A RNA-binding protein RAL 99.5 9.2E-15 3.2E-19 126.9 8.5 76 336-416 25-101 (110)
139 2e44_A Insulin-like growth fac 99.5 1.3E-14 4.5E-19 122.4 9.1 80 336-416 13-93 (96)
140 1x5o_A RNA binding motif, sing 99.5 1.3E-14 4.6E-19 126.3 9.1 80 336-416 23-113 (114)
141 1sjr_A Polypyrimidine tract-bi 99.5 1.4E-14 4.6E-19 137.0 9.6 79 337-416 45-125 (164)
142 2cq2_A Hypothetical protein LO 99.5 1.3E-14 4.4E-19 129.5 8.9 78 336-416 23-107 (114)
143 1wg1_A KIAA1579 protein, homol 99.5 1.1E-14 3.8E-19 121.6 8.0 76 337-416 4-79 (88)
144 2fc8_A NCL protein; structure 99.5 1.7E-14 5.8E-19 123.0 9.2 83 335-418 12-95 (102)
145 1fje_B Nucleolin RBD12, protei 99.5 4.9E-15 1.7E-19 136.6 6.0 79 336-416 97-175 (175)
146 2xs2_A Deleted in azoospermia- 99.5 4.6E-15 1.6E-19 126.8 5.3 80 337-419 8-90 (102)
147 3q2s_C Cleavage and polyadenyl 99.5 8.1E-15 2.8E-19 144.5 6.8 80 337-417 67-152 (229)
148 1wf0_A TDP-43, TAR DNA-binding 99.5 1.4E-14 4.7E-19 120.7 7.1 78 337-418 4-81 (88)
149 2e5g_A U6 snRNA-specific termi 99.5 3.5E-14 1.2E-18 119.8 9.5 78 337-417 7-84 (94)
150 3nmr_A Cugbp ELAV-like family 99.5 2.7E-15 9.1E-20 137.3 2.4 75 337-412 94-174 (175)
151 2dha_A FLJ20171 protein; RRM d 99.5 1E-14 3.4E-19 131.4 5.2 78 337-416 22-106 (123)
152 2lcw_A RNA-binding protein FUS 99.2 1.7E-15 5.7E-20 132.8 0.0 82 336-418 5-98 (116)
153 1b7f_A Protein (SXL-lethal pro 99.5 5.5E-14 1.9E-18 128.0 9.4 80 337-417 2-85 (168)
154 2hzc_A Splicing factor U2AF 65 99.5 5.7E-14 2E-18 116.0 8.6 71 337-411 5-86 (87)
155 1fxl_A Paraneoplastic encephal 99.5 7E-14 2.4E-18 126.6 9.8 79 338-417 2-84 (167)
156 2hgn_A Heterogeneous nuclear r 99.5 1.2E-14 4.2E-19 133.5 4.6 80 336-418 44-126 (139)
157 4f02_A Polyadenylate-binding p 99.5 5.9E-14 2E-18 135.2 9.6 81 337-418 14-98 (213)
158 2bz2_A Negative elongation fac 99.5 5.4E-14 1.9E-18 125.5 8.4 78 336-418 37-114 (121)
159 3zzy_A Polypyrimidine tract-bi 99.5 1E-13 3.5E-18 126.3 10.3 78 337-416 27-107 (130)
160 2cjk_A Nuclear polyadenylated 99.5 5.2E-14 1.8E-18 128.2 8.3 77 337-415 86-166 (167)
161 2f3j_A RNA and export factor b 99.5 7.8E-14 2.7E-18 132.4 9.6 83 334-417 84-169 (177)
162 2j8a_A Histone-lysine N-methyl 99.5 9.9E-14 3.4E-18 126.6 9.6 74 338-412 2-93 (136)
163 2hgm_A HNRPF protein, heteroge 99.5 3.7E-14 1.3E-18 128.4 6.7 77 336-415 40-121 (126)
164 3tyt_A Heterogeneous nuclear r 99.5 1E-13 3.4E-18 134.2 10.2 79 336-416 2-81 (205)
165 3md3_A Nuclear and cytoplasmic 99.5 6.4E-14 2.2E-18 126.7 8.3 78 339-417 1-81 (166)
166 2dnl_A Cytoplasmic polyadenyla 99.5 1.1E-13 3.7E-18 121.3 9.4 76 336-415 6-88 (114)
167 3beg_B Splicing factor, argini 99.5 4.2E-14 1.4E-18 124.5 6.3 77 337-417 15-96 (115)
168 2e5i_A Heterogeneous nuclear r 99.4 3.7E-13 1.3E-17 121.6 11.3 76 339-417 26-104 (124)
169 1l3k_A Heterogeneous nuclear r 99.4 1.9E-13 6.4E-18 127.8 9.6 80 336-417 11-94 (196)
170 3pgw_S U1-70K; protein-RNA com 99.4 2.1E-13 7.3E-18 146.5 10.9 84 335-419 99-186 (437)
171 2qfj_A FBP-interacting repress 99.4 1.8E-13 6.2E-18 129.7 9.1 80 337-417 124-207 (216)
172 2yh0_A Splicing factor U2AF 65 99.4 1.8E-13 6.3E-18 128.0 8.6 81 336-417 112-196 (198)
173 3pgw_A U1-A; protein-RNA compl 99.4 3.6E-13 1.2E-17 133.9 11.2 82 335-417 6-92 (282)
174 2g4b_A Splicing factor U2AF 65 99.4 2.4E-13 8.1E-18 124.4 9.1 77 336-413 92-172 (172)
175 2dit_A HIV TAT specific factor 99.4 6.2E-13 2.1E-17 116.3 11.1 82 335-417 12-104 (112)
176 2diu_A KIAA0430 protein; struc 99.4 2.5E-13 8.7E-18 117.5 8.3 77 336-419 6-88 (96)
177 3sde_A Paraspeckle component 1 99.4 2.6E-13 9E-18 134.7 9.3 79 337-416 95-180 (261)
178 2voo_A Lupus LA protein; RNA-b 99.4 3.5E-13 1.2E-17 129.5 9.7 76 338-415 109-187 (193)
179 2qfj_A FBP-interacting repress 99.4 3.9E-13 1.3E-17 127.4 9.8 81 338-419 28-112 (216)
180 2adc_A Polypyrimidine tract-bi 99.4 3.4E-13 1.2E-17 131.3 8.5 81 333-415 29-110 (229)
181 2pe8_A Splicing factor 45; RRM 99.4 7.5E-13 2.6E-17 115.7 9.2 79 336-414 6-93 (105)
182 2cjk_A Nuclear polyadenylated 99.4 4.5E-13 1.5E-17 122.0 7.9 77 337-416 2-82 (167)
183 3nmr_A Cugbp ELAV-like family 99.4 7.1E-13 2.4E-17 121.1 8.3 80 337-417 2-90 (175)
184 1b7f_A Protein (SXL-lethal pro 99.4 1.3E-12 4.6E-17 118.8 9.3 76 336-412 87-168 (168)
185 3pgw_A U1-A; protein-RNA compl 99.4 1.8E-12 6.3E-17 128.8 10.9 77 335-413 204-281 (282)
186 1qm9_A Polypyrimidine tract-bi 99.4 6.8E-13 2.3E-17 125.0 7.0 78 337-416 2-80 (198)
187 2ghp_A U4/U6 snRNA-associated 99.4 1.6E-12 5.4E-17 129.9 9.9 80 335-416 207-292 (292)
188 1fje_B Nucleolin RBD12, protei 99.3 5.5E-13 1.9E-17 122.8 5.8 82 334-417 9-93 (175)
189 1fxl_A Paraneoplastic encephal 99.3 1.3E-12 4.4E-17 118.3 8.0 76 336-412 86-167 (167)
190 3smz_A Protein raver-1, ribonu 99.3 1.8E-12 6.1E-17 129.0 9.4 85 336-421 182-270 (284)
191 3sde_A Paraspeckle component 1 99.3 4.4E-12 1.5E-16 125.9 10.4 78 336-416 20-97 (261)
192 2yh0_A Splicing factor U2AF 65 99.3 4.4E-12 1.5E-16 118.5 9.0 77 337-417 3-90 (198)
193 2g4b_A Splicing factor U2AF 65 99.3 5.5E-12 1.9E-16 115.3 9.1 76 337-416 3-89 (172)
194 1qm9_A Polypyrimidine tract-bi 99.3 5.5E-12 1.9E-16 118.7 8.7 79 335-415 117-197 (198)
195 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.9E-11 6.5E-16 106.2 11.1 78 337-417 9-92 (100)
196 2adc_A Polypyrimidine tract-bi 99.3 8.2E-12 2.8E-16 121.5 9.2 79 335-415 148-228 (229)
197 3smz_A Protein raver-1, ribonu 99.3 9.6E-12 3.3E-16 123.7 9.5 81 336-417 93-177 (284)
198 1jmt_A Splicing factor U2AF 35 99.2 2.1E-12 7.2E-17 112.4 3.4 69 343-412 20-103 (104)
199 3tyt_A Heterogeneous nuclear r 99.2 7E-12 2.4E-16 121.2 7.1 76 336-412 121-204 (205)
200 2ghp_A U4/U6 snRNA-associated 99.2 1.1E-11 3.9E-16 123.7 8.7 81 337-418 116-200 (292)
201 3v4m_A Splicing factor U2AF 65 99.2 1.9E-11 6.7E-16 106.6 8.0 80 336-415 3-97 (105)
202 3s6e_A RNA-binding protein 39; 99.2 5E-11 1.7E-15 105.9 8.6 79 337-415 6-93 (114)
203 3tht_A Alkylated DNA repair pr 99.2 8.7E-11 3E-15 122.9 11.0 78 334-413 14-97 (345)
204 3ue2_A Poly(U)-binding-splicin 99.2 4.7E-11 1.6E-15 106.7 7.4 78 337-414 19-108 (118)
205 2dnr_A Synaptojanin-1; RRM dom 98.9 4.1E-09 1.4E-13 90.4 8.8 77 333-415 2-86 (91)
206 1owx_A Lupus LA protein, SS-B, 98.6 1.3E-07 4.4E-12 85.2 9.2 75 336-413 16-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 98.6 6.6E-08 2.3E-12 83.4 6.5 76 332-413 9-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.5 8.9E-08 3E-12 92.5 6.1 64 351-414 141-212 (222)
209 2dhx_A Poly (ADP-ribose) polym 97.6 0.0004 1.4E-08 60.7 9.9 76 336-417 6-86 (104)
210 2l9w_A U4/U6 snRNA-associated- 97.3 0.00081 2.8E-08 59.5 8.2 74 338-414 21-99 (117)
211 1wey_A Calcipressin 1; structu 96.3 0.0079 2.7E-07 52.6 6.7 76 337-415 4-84 (104)
212 2d9m_A Zinc finger CCCH-type d 96.1 0.0011 3.7E-08 53.9 0.5 23 183-205 20-42 (69)
213 2rhk_C Cleavage and polyadenyl 96.0 0.0012 4.2E-08 53.9 0.1 24 182-205 15-38 (72)
214 1wwh_A Nucleoporin 35, nucleop 95.8 0.019 6.4E-07 51.4 7.1 74 338-416 24-98 (119)
215 2d9n_A Cleavage and polyadenyl 95.7 0.0024 8.1E-08 52.6 0.9 23 183-205 10-32 (77)
216 2cqe_A KIAA1064 protein; CCCH 95.6 0.0057 1.9E-07 52.8 2.8 23 183-205 36-59 (98)
217 3d2q_A Muscleblind-like protei 95.3 0.0037 1.3E-07 50.6 0.7 22 184-205 7-29 (70)
218 3p3d_A Nucleoporin 53; structu 95.3 0.015 5E-07 53.0 4.5 62 352-414 19-98 (132)
219 1m9o_A Tristetraproline; Cys3H 95.3 0.0057 2E-07 49.7 1.7 25 181-205 10-35 (77)
220 2cqe_A KIAA1064 protein; CCCH 94.9 0.0065 2.2E-07 52.4 1.1 29 183-211 13-42 (98)
221 1m9o_A Tristetraproline; Cys3H 94.8 0.0052 1.8E-07 50.0 0.0 23 183-205 50-73 (77)
222 3d2q_A Muscleblind-like protei 94.6 0.0078 2.7E-07 48.7 0.7 22 183-205 42-63 (70)
223 3d2n_A Muscleblind-like protei 94.4 0.012 4E-07 49.4 1.4 22 184-205 10-32 (83)
224 1uw4_A UPF3X; nonsense mediate 93.9 0.16 5.3E-06 43.3 7.3 66 339-405 2-73 (91)
225 2e5s_A Otthump00000018578; ZF- 93.8 0.013 4.4E-07 50.6 0.4 23 182-205 55-77 (98)
226 1i2t_A HYD protein; four alpha 93.4 0.058 2E-06 42.8 3.5 50 8-58 7-57 (61)
227 2rpp_A Muscleblind-like protei 93.4 0.017 5.9E-07 49.1 0.5 23 183-205 17-40 (89)
228 2e5s_A Otthump00000018578; ZF- 93.3 0.015 5.1E-07 50.3 -0.1 22 184-205 21-43 (98)
229 3pq1_A Poly(A) RNA polymerase; 92.9 0.042 1.4E-06 59.5 2.8 56 338-396 53-108 (464)
230 3d2n_A Muscleblind-like protei 92.5 0.03 1E-06 47.0 0.6 23 182-205 42-64 (83)
231 2kn4_A Immunoglobulin G-bindin 91.8 0.077 2.6E-06 47.7 2.7 31 369-399 3-35 (158)
232 2d9n_A Cleavage and polyadenyl 91.7 0.038 1.3E-06 45.3 0.4 22 183-205 38-60 (77)
233 2dyd_A Poly(A)-binding protein 91.5 0.11 3.7E-06 43.8 3.1 50 8-58 28-78 (85)
234 1nmr_A Poly(A)-binding protein 91.4 0.1 3.5E-06 44.0 2.7 50 8-58 29-79 (85)
235 3kuj_A Polyadenylate-binding p 90.9 0.2 6.7E-06 42.6 4.0 53 8-61 26-79 (88)
236 2rhk_C Cleavage and polyadenyl 90.8 0.047 1.6E-06 44.4 0.1 22 183-205 44-66 (72)
237 2i2y_A Fusion protein consists 90.2 0.099 3.4E-06 46.8 1.7 43 374-417 10-53 (150)
238 1ifw_A Polyadenylate-binding p 90.1 0.22 7.6E-06 42.6 3.7 53 8-61 26-81 (92)
239 1whv_A Poly(A)-specific ribonu 89.3 0.96 3.3E-05 39.1 7.1 55 337-397 15-69 (100)
240 2rpp_A Muscleblind-like protei 88.6 0.097 3.3E-06 44.4 0.4 22 183-205 51-72 (89)
241 3ctr_A Poly(A)-specific ribonu 87.1 0.62 2.1E-05 40.4 4.5 54 339-398 7-60 (101)
242 2l08_A Regulator of nonsense t 85.2 1.2 4.3E-05 38.3 5.4 67 337-404 8-80 (97)
243 2fc6_A Nuclear, target of EGR1 82.2 0.76 2.6E-05 34.9 2.5 27 182-208 19-47 (50)
244 1g9l_A Polyadenylate-binding p 81.2 0.59 2E-05 43.0 1.9 51 9-60 73-124 (144)
245 4f25_A Polyadenylate-binding p 77.5 0.054 1.9E-06 46.6 -6.0 19 336-355 95-113 (115)
246 3d45_A Poly(A)-specific ribonu 57.1 27 0.00093 37.9 8.6 56 337-398 439-494 (507)
247 3u9g_A Zinc finger CCCH-type a 36.7 9.4 0.00032 37.5 0.8 25 181-205 87-115 (229)
248 1i25_A Huwentoxin-II, HWTX-II; 35.9 11 0.00036 26.5 0.7 20 180-202 12-31 (37)
249 3v33_A Ribonuclease ZC3H12A; r 33.3 9 0.00031 37.6 0.0 25 179-205 188-212 (223)
250 3u9g_A Zinc finger CCCH-type a 23.7 20 0.00067 35.3 0.5 22 183-205 175-196 (229)
251 2rnl_A Amphiregulin; AR, color 20.4 24 0.00081 26.5 0.2 21 184-205 10-30 (50)
No 1
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.90 E-value=1.6e-24 Score=216.42 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=72.5
Q ss_pred CCCCCCCCCCcceEEEeCCCCCCC---------CHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccC
Q 008448 328 RSDPGPIVTGSRQIYLTFPAESTF---------TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN 398 (565)
Q Consensus 328 r~d~~~~~~~~~kIfVgn~L~~~~---------TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN 398 (565)
+...+......++||||| |+..+ ||++|+++|++||+|++|+|+. +||||||+|.+.++|+.|++.||
T Consensus 124 ~~g~gs~~~~~rtLfVgn-L~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~ 200 (240)
T 3u1l_A 124 MGGIGSFRKKNKTLYVGG-IDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMS 200 (240)
T ss_dssp -------CCCCCEEEEEC-TTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHT
T ss_pred ccCcCccccCCceeecCC-CChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhC
Confidence 333444556789999999 99988 7999999999999999999997 78999999999999999999999
Q ss_pred Ccee------------eeeEEEEEecccCcchhhh
Q 008448 399 PHFV------------CGARVLVKPYREKSKLVDR 421 (565)
Q Consensus 399 ~~~i------------~Gr~V~Vk~A~~K~k~~~k 421 (565)
+..| +|+.|.|+||+++.....+
T Consensus 201 g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp~~~ 235 (240)
T 3u1l_A 201 NQTLLLPSDKEWDDRREGTGLLVKWANEDPDPAAQ 235 (240)
T ss_dssp TCCCCCTTSTTGGGGGGSCCCEEEECC--------
T ss_pred CCEEeccccccccccCCCCEEEEEEccCCCCHHHh
Confidence 9999 8999999999987654433
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=143.60 Aligned_cols=77 Identities=16% Similarity=0.304 Sum_probs=73.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..++|||+| ||+++|+++|+++|++||+|.+|+|++ |++||||||+|.+.++|++|++.+|+..|+|+.|.|.+|
T Consensus 18 ~gt~lfV~n-Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNY-LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEES-CCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457899999 999999999999999999999999984 788999999999999999999999999999999999999
Q ss_pred cc
Q 008448 413 RE 414 (565)
Q Consensus 413 ~~ 414 (565)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 3
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.70 E-value=2.4e-17 Score=145.09 Aligned_cols=82 Identities=17% Similarity=0.451 Sum_probs=74.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec--CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC--QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~--gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
...+|||+| |++++|+++|+++|++||+|.+|+|+. +.+||||||+|.+.++|++|++.+|++.|+|+.|.|.++.+
T Consensus 4 ~~~~lfV~n-Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKN-LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECC-CCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 356899999 999999999999999999999999996 55799999999999999999999999999999999999988
Q ss_pred Ccchh
Q 008448 415 KSKLV 419 (565)
Q Consensus 415 K~k~~ 419 (565)
+....
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 76443
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.69 E-value=7.8e-17 Score=141.71 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=76.0
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
+..++|||+| |++++|+++|+++|++||+|.+|+|++ +++||||||+|.+.++|++|++.+|+..|+|+.|.|.+
T Consensus 4 ~p~~~lfV~n-L~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFAR-LNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEES-CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEEC-CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4568999999 999999999999999999999999984 78999999999999999999999999999999999999
Q ss_pred cccCcch
Q 008448 412 YREKSKL 418 (565)
Q Consensus 412 A~~K~k~ 418 (565)
+..+.+.
T Consensus 83 a~~~~~~ 89 (110)
T 3s8s_A 83 DIKGQQR 89 (110)
T ss_dssp CSTTHHH
T ss_pred CCCCcHH
Confidence 9765443
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=140.36 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=73.3
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCC-CeeEEEeec----CCCCcEEEEEECCHHHHHHHHHcc-CCceeeeeEEEEEe
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYG-PVDDVRIPC----QQKRMFGFVTFASADTVKMILAKG-NPHFVCGARVLVKP 411 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG-~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~l-N~~~i~Gr~V~Vk~ 411 (565)
+++|||+| ||+++||++|+++|++|| +|.+|+|++ |++||||||+|.+.++|++|++.+ |+..|+|++|.|.+
T Consensus 1 S~~i~v~n-Lp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRM-LPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEET-CCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 46899999 999999999999999999 899999984 789999999999999999999987 46689999999999
Q ss_pred cccCcch
Q 008448 412 YREKSKL 418 (565)
Q Consensus 412 A~~K~k~ 418 (565)
+.++.+.
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9987654
No 6
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-16 Score=133.76 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=76.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.+
T Consensus 6 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRN-LSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEEC-CCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4678999999 999999999999999999999999984 67899999999999999999999999999999999999
Q ss_pred cccCcch
Q 008448 412 YREKSKL 418 (565)
Q Consensus 412 A~~K~k~ 418 (565)
++++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9987653
No 7
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=1.5e-16 Score=130.42 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=73.3
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
.+|||+| |+.++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..++|+.|.|.++++
T Consensus 2 ~~l~V~n-lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGD-LNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEEC-CCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899999 999999999999999999999999984 67899999999999999999999999999999999999998
Q ss_pred Cc
Q 008448 415 KS 416 (565)
Q Consensus 415 K~ 416 (565)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=132.11 Aligned_cols=79 Identities=14% Similarity=0.278 Sum_probs=72.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
+..++|||+| |+.++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.++|+.|.|.+
T Consensus 4 ~~~~~l~v~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGD-LSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeC-CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3568999999 999999999999999999999999984 67899999999999999999999999999999999999
Q ss_pred cccC
Q 008448 412 YREK 415 (565)
Q Consensus 412 A~~K 415 (565)
+++|
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9876
No 9
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=1.6e-16 Score=130.82 Aligned_cols=79 Identities=22% Similarity=0.380 Sum_probs=73.7
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
..+..++|||+| |+.++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..++|+.|.|
T Consensus 3 ~~~~~~~l~V~n-l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 3 MATTKRVLYVGG-LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 81 (85)
T ss_dssp CCCCSSEEEEEC-CCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEEC-CCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345678999999 999999999999999999999999974 678999999999999999999999999999999999
Q ss_pred Eecc
Q 008448 410 KPYR 413 (565)
Q Consensus 410 k~A~ 413 (565)
.+++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9985
No 10
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=5.4e-18 Score=163.55 Aligned_cols=84 Identities=15% Similarity=0.428 Sum_probs=76.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec--CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC--QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~--gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
...+|||+| |++.+|+++|+++|++||.|.+|+|++ +.+||||||+|.+.++|++|++.||++.|+|++|.|.+|++
T Consensus 102 ~~~~l~v~n-l~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKN-LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECC-cccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 457899999 999999999999999999999999995 55799999999999999999999999999999999999998
Q ss_pred Ccchhhh
Q 008448 415 KSKLVDR 421 (565)
Q Consensus 415 K~k~~~k 421 (565)
+.....+
T Consensus 181 ~~~~~~~ 187 (213)
T 4f02_A 181 RKEREAE 187 (213)
T ss_dssp HHHHHHH
T ss_pred Ccccchh
Confidence 7654433
No 11
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=133.70 Aligned_cols=83 Identities=25% Similarity=0.397 Sum_probs=76.5
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
.....++|||+| |++.+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++ +|++.|+|+.|.|
T Consensus 6 ~~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGG-IPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEES-CCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345678999999 999999999999999999999999984 6789999999999999999999 8999999999999
Q ss_pred EecccCcch
Q 008448 410 KPYREKSKL 418 (565)
Q Consensus 410 k~A~~K~k~ 418 (565)
.++.++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999987654
No 12
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=135.29 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=78.3
Q ss_pred CCCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEE
Q 008448 333 PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (565)
Q Consensus 333 ~~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~ 408 (565)
......++|||+| |++.+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.
T Consensus 7 ~~~~~~~~l~V~n-Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 7 GMATTKRVLYVGG-LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp CSCCCCSCEEEES-CCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CcCCCCCEEEEeC-CCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3445678999999 999999999999999999999999974 67899999999999999999999999999999999
Q ss_pred EEecccCcch
Q 008448 409 VKPYREKSKL 418 (565)
Q Consensus 409 Vk~A~~K~k~ 418 (565)
|.+++++...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2cqb_A 86 VNLAKPMRIK 95 (102)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999987654
No 13
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=132.48 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=76.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
+.+++|||+| |+..+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.+
T Consensus 3 ~~~~~l~v~n-lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGS-LHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEES-CCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4678999999 999999999999999999999999985 67899999999999999999999999999999999999
Q ss_pred cccCcch
Q 008448 412 YREKSKL 418 (565)
Q Consensus 412 A~~K~k~ 418 (565)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9887653
No 14
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.9e-16 Score=130.00 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=74.5
Q ss_pred CCCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEE
Q 008448 333 PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (565)
Q Consensus 333 ~~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~ 408 (565)
...+..++|||+| |++.+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.
T Consensus 11 ~~~~~~~~l~V~n-lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 11 GLAPSKSTVYVSN-LPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp SCCCCTTSEEEES-CCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEEC-CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3445678999999 999999999999999999999999985 67899999999999999999999999999999999
Q ss_pred EEecc
Q 008448 409 VKPYR 413 (565)
Q Consensus 409 Vk~A~ 413 (565)
|.+|+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 15
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.2e-16 Score=132.87 Aligned_cols=84 Identities=20% Similarity=0.312 Sum_probs=77.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec--CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC--QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~--gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
....++|||+| |++++|+++|+++|++||+|.+|+|+. +.++|||||+|.+.++|++|++.+|++.|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~n-lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSN-IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEES-CCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 34678999999 999999999999999999999999996 457999999999999999999999999999999999999
Q ss_pred ccCcchh
Q 008448 413 REKSKLV 419 (565)
Q Consensus 413 ~~K~k~~ 419 (565)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cq3_A 91 TARVMTN 97 (103)
T ss_dssp CSSCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 16
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-16 Score=134.42 Aligned_cols=83 Identities=14% Similarity=0.186 Sum_probs=77.1
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~n-lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTN-LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEES-CCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44679999999 999999999999999999999999984 6789999999999999999999999999999999999
Q ss_pred ecccCcch
Q 008448 411 PYREKSKL 418 (565)
Q Consensus 411 ~A~~K~k~ 418 (565)
+++++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99887653
No 17
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=3.6e-16 Score=132.43 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=76.7
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
+++|||+| |+..+|+++|+++|++||.|.+|+|+. |+++|||||+|.+.++|++|++.+|+..|+|+.|.|.++.
T Consensus 2 ~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGS-IPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEES-CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEEC-CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 57999999 999999999999999999999999984 6789999999999999999999999999999999999999
Q ss_pred cCcchhh
Q 008448 414 EKSKLVD 420 (565)
Q Consensus 414 ~K~k~~~ 420 (565)
++.....
T Consensus 81 ~~~~~~~ 87 (96)
T 2x1f_A 81 NSDISGV 87 (96)
T ss_dssp CSSGGGH
T ss_pred CCCCCCc
Confidence 8876543
No 18
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.4e-16 Score=133.55 Aligned_cols=83 Identities=19% Similarity=0.267 Sum_probs=77.1
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 12 RNQDATVYVGG-LDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCTTTEEEEEC-CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34678999999 999999999999999999999999985 6789999999999999999999999999999999999
Q ss_pred ecccCcch
Q 008448 411 PYREKSKL 418 (565)
Q Consensus 411 ~A~~K~k~ 418 (565)
++.++.+.
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99887643
No 19
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.6e-16 Score=133.99 Aligned_cols=83 Identities=14% Similarity=0.259 Sum_probs=77.1
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccC------Cceeee
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGN------PHFVCG 404 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN------~~~i~G 404 (565)
....++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+| ++.|+|
T Consensus 12 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 12 VTEGKTVFIRN-LSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCEEEES-CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCCEEEEEC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34678999999 999999999999999999999999994 6789999999999999999999999 999999
Q ss_pred eEEEEEecccCcch
Q 008448 405 ARVLVKPYREKSKL 418 (565)
Q Consensus 405 r~V~Vk~A~~K~k~ 418 (565)
+.|.|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999987654
No 20
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=133.55 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=75.6
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-------CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-------QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-------gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~ 408 (565)
+..++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.
T Consensus 3 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKN-LNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEES-CCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3568999999 999999999999999999999999994 26789999999999999999999999999999999
Q ss_pred EEecccCcch
Q 008448 409 VKPYREKSKL 418 (565)
Q Consensus 409 Vk~A~~K~k~ 418 (565)
|.++.++...
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999887543
No 21
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2e-16 Score=133.38 Aligned_cols=83 Identities=19% Similarity=0.339 Sum_probs=76.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEE-Eeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDV-RIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V-~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
+..++|||+| |++.+|+++|+++|++||+|.+| +|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 3 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGN-LDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEEC-CCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3568999999 99999999999999999999999 8884 6789999999999999999999999999999999999
Q ss_pred ecccCcchh
Q 008448 411 PYREKSKLV 419 (565)
Q Consensus 411 ~A~~K~k~~ 419 (565)
++.++....
T Consensus 82 ~a~~~~~~~ 90 (96)
T 1x5t_A 82 YAFKKDSKG 90 (96)
T ss_dssp ESCCCCCCC
T ss_pred EecccCCCC
Confidence 998876543
No 22
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=134.41 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=76.2
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
.....++|||+| |++++|+++|+++|++||.|. +++++++++|||||+|.+.++|++|++.+|+..|+|+.|.|.+++
T Consensus 15 ~~~~~~~l~V~n-L~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 15 GAPLAADVYVGN-LPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSCCCCEEEEEC-CCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeC-CCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 344678999999 999999999999999999997 788888999999999999999999999999999999999999998
Q ss_pred cCcc
Q 008448 414 EKSK 417 (565)
Q Consensus 414 ~K~k 417 (565)
++.+
T Consensus 93 ~~~~ 96 (97)
T 2e5j_A 93 QQRD 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=133.19 Aligned_cols=81 Identities=10% Similarity=0.184 Sum_probs=76.2
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
...++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.++
T Consensus 15 ~~~~~l~v~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISG-LPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEES-CCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 4568999999 999999999999999999999999995 778899999999999999999999999999999999999
Q ss_pred ccCcc
Q 008448 413 REKSK 417 (565)
Q Consensus 413 ~~K~k 417 (565)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 98764
No 24
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=4.7e-16 Score=135.71 Aligned_cols=84 Identities=14% Similarity=0.287 Sum_probs=77.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....++|||+| |++.+|+++|+++|++||.|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGD-LSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34678999999 999999999999999999999999984 6779999999999999999999999999999999999
Q ss_pred ecccCcchh
Q 008448 411 PYREKSKLV 419 (565)
Q Consensus 411 ~A~~K~k~~ 419 (565)
+++++....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 999876654
No 25
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.6e-16 Score=133.76 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=76.7
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
....++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.+++
T Consensus 19 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGN-LPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34668999999 999999999999999999999999986 6679999999999999999999999999999999999998
Q ss_pred cCcch
Q 008448 414 EKSKL 418 (565)
Q Consensus 414 ~K~k~ 418 (565)
++.+.
T Consensus 98 ~~~~~ 102 (109)
T 1x4a_A 98 SGRGT 102 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87543
No 26
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.2e-16 Score=131.99 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=76.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec--CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC--QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~--gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
....++|||+| |++.+|+++|+++|++||+|.+|+|+. +.++|||||+|.+.++|++|++.+|++.|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGN-LSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEES-CCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeC-CCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 34678999999 999999999999999999999999996 457899999999999999999999999999999999999
Q ss_pred ccCcc
Q 008448 413 REKSK 417 (565)
Q Consensus 413 ~~K~k 417 (565)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 88654
No 27
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=135.03 Aligned_cols=83 Identities=24% Similarity=0.272 Sum_probs=76.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 10 ~~~~~~l~V~n-Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 10 VDGMITLKVDN-LTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CSCCCEEEEES-CCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCeEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34678999999 999999999999999999999999985 7789999999999999999999999999999999999
Q ss_pred ecccCcch
Q 008448 411 PYREKSKL 418 (565)
Q Consensus 411 ~A~~K~k~ 418 (565)
+++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99876544
No 28
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=4.7e-16 Score=128.65 Aligned_cols=79 Identities=15% Similarity=0.303 Sum_probs=73.5
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
.+++|||+| |+.++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..++|+.|.|.+
T Consensus 3 ~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGR-LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEEC-CCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 467999999 999999999999999999999999985 23899999999999999999999999999999999999
Q ss_pred cccCc
Q 008448 412 YREKS 416 (565)
Q Consensus 412 A~~K~ 416 (565)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 29
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=3.7e-16 Score=138.38 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=74.7
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCC-CeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYG-PVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG-~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..+...+|||+| |++++|+++|+++|++|| +|..|.|+.++++|||||+|.+.++|++|++.+|+..|+|+.|.|.++
T Consensus 24 ~p~~~~~l~Vgn-Lp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 24 LPAKRYRITMKN-LPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp -CCCCEEEEEEC-SSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCCCEEEEEC-CCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 344568999999 999999999999999999 999999987789999999999999999999999999999999999998
Q ss_pred ccCc
Q 008448 413 REKS 416 (565)
Q Consensus 413 ~~K~ 416 (565)
....
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7543
No 30
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=8.6e-17 Score=138.20 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=75.4
Q ss_pred CcceEEEeCCCCC------CCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeee-e
Q 008448 337 GSRQIYLTFPAES------TFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCG-A 405 (565)
Q Consensus 337 ~~~kIfVgn~L~~------~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~G-r 405 (565)
..++|||+| ||+ ++++++|+++|++||+|.+|+|++ |++||||||+|.+.++|++|++.+|+..|+| +
T Consensus 5 ~~~~vfV~n-Lp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNG-APVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEES-CCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeC-CCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 357999999 999 999999999999999999999994 7889999999999999999999999999999 9
Q ss_pred EEEEEecccCcch
Q 008448 406 RVLVKPYREKSKL 418 (565)
Q Consensus 406 ~V~Vk~A~~K~k~ 418 (565)
.|.|.++.++.+.
T Consensus 84 ~l~V~~a~~~~~~ 96 (100)
T 3ns6_A 84 RLFLYTMKDVERY 96 (100)
T ss_dssp BCEEEESHHHHHH
T ss_pred EEEEEECchhhhh
Confidence 9999999876543
No 31
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-16 Score=138.75 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=74.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccC--CceeeeeEEEEEec
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN--PHFVCGARVLVKPY 412 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN--~~~i~Gr~V~Vk~A 412 (565)
.+..++|||+| |++++||++|+++|++||+|.+|+|++ .||||||+|++.++|++|++.++ +..|+||+|.|.++
T Consensus 13 ~~~~~~LfV~n-Lp~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRK-LPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECS-CCTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 34678999999 999999999999999999999999998 48999999999999999999765 57899999999999
Q ss_pred ccCcchh
Q 008448 413 REKSKLV 419 (565)
Q Consensus 413 ~~K~k~~ 419 (565)
+++....
T Consensus 90 ~~~~~~~ 96 (105)
T 1sjq_A 90 NHKELKT 96 (105)
T ss_dssp SSSSCCC
T ss_pred CCCCCCc
Confidence 8876544
No 32
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8e-16 Score=129.21 Aligned_cols=80 Identities=26% Similarity=0.297 Sum_probs=74.4
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
..+..++|||+| |++.+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..|+|+.|.|
T Consensus 11 ~~~~~~~l~v~n-lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFG-LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEES-CCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEEC-CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999 999999999999999999999999984 678999999999999999999999999999999999
Q ss_pred Eeccc
Q 008448 410 KPYRE 414 (565)
Q Consensus 410 k~A~~ 414 (565)
.++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 33
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.7e-16 Score=133.36 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=77.6
Q ss_pred CCCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEE
Q 008448 333 PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (565)
Q Consensus 333 ~~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~ 408 (565)
...+..++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.
T Consensus 7 ~~~~~~~~l~v~n-Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 7 GMASDEGKLFVGG-LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCSEEEEES-CCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCEEEEEC-CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3445679999999 999999999999999999999999985 67899999999999999999999999999999999
Q ss_pred EEecccCcc
Q 008448 409 VKPYREKSK 417 (565)
Q Consensus 409 Vk~A~~K~k 417 (565)
|.+++++..
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 999988764
No 34
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=3.2e-16 Score=132.32 Aligned_cols=85 Identities=14% Similarity=0.266 Sum_probs=78.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHH----HHhhcCCCeeEEEeec-CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVS----NYFNTYGPVDDVRIPC-QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr----~~Fs~fG~V~~V~I~~-gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
+.+++|||+| |++++|+++|+ ++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..++|+.|.|.
T Consensus 6 ~~~~~l~V~n-Lp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 6 RPNHTIYINN-LNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCCSEEEEES-CCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4678999999 99999999999 9999999999999984 6789999999999999999999999999999999999
Q ss_pred ecccCcchhhh
Q 008448 411 PYREKSKLVDR 421 (565)
Q Consensus 411 ~A~~K~k~~~k 421 (565)
+++++.....+
T Consensus 85 ~a~~~~~~~~k 95 (97)
T 1nu4_A 85 YAKTDSDIIAK 95 (97)
T ss_dssp ECSSCCTHHHH
T ss_pred EccCCCccccc
Confidence 99998766543
No 35
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=6.8e-16 Score=132.39 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=76.7
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeee---eEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCG---ARVL 408 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~G---r~V~ 408 (565)
.+..++|||+| |++.+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..+.| +.|.
T Consensus 12 ~~~~~~l~v~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGM-LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEES-CCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 34678999999 999999999999999999999999995 6779999999999999999999999999998 9999
Q ss_pred EEecccCcch
Q 008448 409 VKPYREKSKL 418 (565)
Q Consensus 409 Vk~A~~K~k~ 418 (565)
|.++.++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999887653
No 36
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.8e-16 Score=130.30 Aligned_cols=81 Identities=10% Similarity=0.127 Sum_probs=74.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHH----HHhhcCCCeeEEEeecC-CCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVS----NYFNTYGPVDDVRIPCQ-QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr----~~Fs~fG~V~~V~I~~g-k~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....+|||+| |++++|+++|+ ++|++||+|.+|+|++. ..||||||+|.+.++|++|++.+|+..|+|++|+|.
T Consensus 7 ~~~~~l~V~n-L~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSN-IDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEES-CCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEEC-CCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3568999999 99999999999 99999999999999962 228999999999999999999999999999999999
Q ss_pred ecccCcc
Q 008448 411 PYREKSK 417 (565)
Q Consensus 411 ~A~~K~k 417 (565)
+++++..
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987653
No 37
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.63 E-value=9e-17 Score=134.98 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=67.9
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCC--CeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYG--PVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG--~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
.+||||| |++++|+++|+++|++|| .|.+|+|+. |++||||||+|.+.++|++|++.+|+..|+|+.|.|.++
T Consensus 2 ~~l~V~n-L~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGN-LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEES-CCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeC-CCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999 999999999999999999 999999984 788999999999999999999999999999999999999
Q ss_pred ccCcch
Q 008448 413 REKSKL 418 (565)
Q Consensus 413 ~~K~k~ 418 (565)
.++...
T Consensus 81 ~~~~~~ 86 (90)
T 3p5t_L 81 NKLEHH 86 (90)
T ss_dssp ------
T ss_pred CCCccc
Confidence 886543
No 38
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.9e-16 Score=136.62 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=72.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
..++||||| |++++|+++|+++|++||+|.+|+|++ +++||||||+|.+.++|++|+. +|++.|+|+.|.|.++.
T Consensus 10 ~~~~lfV~~-Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKG-FPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEEC-CCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEEC-CCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 468999999 999999999999999999999999996 7899999999999999999999 79999999999999876
Q ss_pred cC
Q 008448 414 EK 415 (565)
Q Consensus 414 ~K 415 (565)
+.
T Consensus 88 ~~ 89 (103)
T 1s79_A 88 DY 89 (103)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 39
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=4.7e-16 Score=135.90 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=76.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
.+..++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 22 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYH-LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEES-CCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34568999999 999999999999999999999999984 6789999999999999999999999999999999999
Q ss_pred ecccCcch
Q 008448 411 PYREKSKL 418 (565)
Q Consensus 411 ~A~~K~k~ 418 (565)
+++++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99887653
No 40
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.1e-16 Score=132.45 Aligned_cols=82 Identities=16% Similarity=0.334 Sum_probs=76.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec--CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC--QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~--gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
...++|||+| |++.+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..|+|+.|.|.+++
T Consensus 13 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 13 YQVVNLYVKN-LDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSCCCEEEEC-CCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 4678999999 999999999999999999999999995 6889999999999999999999999999999999999999
Q ss_pred cCcch
Q 008448 414 EKSKL 418 (565)
Q Consensus 414 ~K~k~ 418 (565)
++...
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=7.6e-16 Score=133.37 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=75.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |++.+|+++|+++|++||+|.+|+|+. |+++|||||+|.+.++|++|+..+|++.|+|+.|.|.+
T Consensus 24 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTS-IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEES-CCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4568999999 999999999999999999999999984 77899999999999999999999999999999999999
Q ss_pred cccCcc
Q 008448 412 YREKSK 417 (565)
Q Consensus 412 A~~K~k 417 (565)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 988754
No 42
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.63 E-value=6.6e-16 Score=132.09 Aligned_cols=75 Identities=8% Similarity=0.096 Sum_probs=71.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
..+.-||||| |++.+||++|+++|.+||+|.+++|+. +||||||+|.++++|++|++.||+..++||.|+|+.|.
T Consensus 5 ~~~~wL~VgN-L~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKN-LTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEEC-CCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeC-CCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4577899999 999999999999999999999999987 89999999999999999999999999999999999994
No 43
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=4.6e-16 Score=130.19 Aligned_cols=81 Identities=23% Similarity=0.238 Sum_probs=76.0
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec--CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC--QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~--gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
+..++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.+++
T Consensus 6 ~~~~~l~V~n-lp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRN-LPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECS-CCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4678999999 999999999999999999999999995 7789999999999999999999999999999999999998
Q ss_pred cCcc
Q 008448 414 EKSK 417 (565)
Q Consensus 414 ~K~k 417 (565)
++..
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 44
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.7e-16 Score=133.59 Aligned_cols=81 Identities=14% Similarity=0.233 Sum_probs=75.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |++.+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.+
T Consensus 21 ~~~~~l~V~n-lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTG-VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEEC-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3568999999 999999999999999999999999984 67799999999999999999999999999999999999
Q ss_pred cccCcc
Q 008448 412 YREKSK 417 (565)
Q Consensus 412 A~~K~k 417 (565)
+.++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 988753
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=135.15 Aligned_cols=77 Identities=22% Similarity=0.247 Sum_probs=70.2
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCC--eeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCc----eeeeeE
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGP--VDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPH----FVCGAR 406 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~--V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~----~i~Gr~ 406 (565)
.-.||||+| |++++|+++|+++|++||. |.+|+|++ |++||||||+|.+.++|++|++.+|+. .|+||+
T Consensus 8 ~m~tlfV~n-L~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRN-IAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEES-CCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeC-CCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 346999999 9999999999999999995 67999984 789999999999999999999998875 699999
Q ss_pred EEEEeccc
Q 008448 407 VLVKPYRE 414 (565)
Q Consensus 407 V~Vk~A~~ 414 (565)
|.|.+|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 46
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=131.05 Aligned_cols=83 Identities=19% Similarity=0.361 Sum_probs=76.5
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-----CCCCcEEEEEECCHHHHHHHHHcc-CCceeeeeEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-----QQKRMFGFVTFASADTVKMILAKG-NPHFVCGARVL 408 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-----gk~RGfaFVtF~~~e~A~~Al~~l-N~~~i~Gr~V~ 408 (565)
....++|||+| |++.+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+ |++.|+|+.|.
T Consensus 12 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRN-IPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEES-CCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeC-CCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 34678999999 999999999999999999999999974 567999999999999999999999 99999999999
Q ss_pred EEecccCcch
Q 008448 409 VKPYREKSKL 418 (565)
Q Consensus 409 Vk~A~~K~k~ 418 (565)
|.+++++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999887653
No 47
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.6e-16 Score=134.67 Aligned_cols=81 Identities=21% Similarity=0.344 Sum_probs=75.5
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec--CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC--QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~--gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
....++|||+| |+.++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.++
T Consensus 26 ~~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSN-IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEES-CCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEEC-CCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34678999999 999999999999999999999999995 557999999999999999999999999999999999999
Q ss_pred ccCc
Q 008448 413 REKS 416 (565)
Q Consensus 413 ~~K~ 416 (565)
+++.
T Consensus 105 ~~~~ 108 (109)
T 2err_A 105 TARV 108 (109)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 8863
No 48
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=8.5e-16 Score=127.55 Aligned_cols=77 Identities=23% Similarity=0.465 Sum_probs=72.5
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
.++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|+ .+|++.++|+.|.|.+++
T Consensus 6 ~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGN-VDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEES-CCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 47999999 999999999999999999999999984 678999999999999999999 999999999999999998
Q ss_pred cCc
Q 008448 414 EKS 416 (565)
Q Consensus 414 ~K~ 416 (565)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 754
No 49
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=5.6e-16 Score=140.19 Aligned_cols=86 Identities=9% Similarity=0.154 Sum_probs=78.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHH----HHhhcCCCeeEEEeec-CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVS----NYFNTYGPVDDVRIPC-QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr----~~Fs~fG~V~~V~I~~-gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
.+..++||||| |++.+++++|+ ++|++||+|.+|.|+. +++||||||+|.+.++|.+|+..+|+..|.|+.|.|
T Consensus 26 ~~p~~~LfV~n-L~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLITN-INPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSCCSEEEEES-CCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34578999999 99999999876 6999999999999985 789999999999999999999999999999999999
Q ss_pred EecccCcchhhh
Q 008448 410 KPYREKSKLVDR 421 (565)
Q Consensus 410 k~A~~K~k~~~k 421 (565)
.+++++.....+
T Consensus 105 ~~a~~~~~~~~~ 116 (127)
T 2a3j_A 105 TFSETPQSQVAE 116 (127)
T ss_dssp EECCCCCHHHHC
T ss_pred EEccCcchhccc
Confidence 999988765544
No 50
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=127.93 Aligned_cols=79 Identities=20% Similarity=0.348 Sum_probs=73.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
.+..++|||+| |++++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.+|+..|+|++|.|.++++
T Consensus 5 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGN-LPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEES-CCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 34678999999 99999999999999999999999997 78999999999999999999999999999999999988
Q ss_pred Ccch
Q 008448 415 KSKL 418 (565)
Q Consensus 415 K~k~ 418 (565)
+.+.
T Consensus 80 ~~~~ 83 (90)
T 2dnq_A 80 KSKA 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 51
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=1e-15 Score=131.53 Aligned_cols=82 Identities=12% Similarity=0.250 Sum_probs=76.1
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCcee---eeeEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFV---CGARV 407 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i---~Gr~V 407 (565)
....++|||+| |++++|+++|+++|++||+|.+|+|+. +++||||||+|.+.++|++|++.+|+..+ .|+.|
T Consensus 10 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQ-IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEES-CCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34678999999 999999999999999999999999985 77899999999999999999999999888 99999
Q ss_pred EEEecccCcc
Q 008448 408 LVKPYREKSK 417 (565)
Q Consensus 408 ~Vk~A~~K~k 417 (565)
.|.++.++..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999988654
No 52
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=129.84 Aligned_cols=79 Identities=11% Similarity=0.183 Sum_probs=74.3
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceee--eeEEEEEecc
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC--GARVLVKPYR 413 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~--Gr~V~Vk~A~ 413 (565)
+..++|||+| |++++|+++|+++|++||+|.+|+|+++ +|||||+|.+.++|++|++.+|++.|+ |+.|.|.+++
T Consensus 15 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGG-LGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEEC-CCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 4568999999 9999999999999999999999999984 899999999999999999999999999 9999999999
Q ss_pred cCcc
Q 008448 414 EKSK 417 (565)
Q Consensus 414 ~K~k 417 (565)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 53
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=124.80 Aligned_cols=76 Identities=25% Similarity=0.364 Sum_probs=71.6
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHcc-CCceeeeeEEEEEecc
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG-NPHFVCGARVLVKPYR 413 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~l-N~~~i~Gr~V~Vk~A~ 413 (565)
....++|||+| |+..+|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.+ |+..++|+.|.|.+++
T Consensus 9 ~~~~~~l~V~~-l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGG-LGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEEC-CTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcC-CCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34668999999 999999999999999999999999997 6899999999999999999998 9999999999999985
No 54
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=9.7e-16 Score=132.57 Aligned_cols=80 Identities=11% Similarity=0.129 Sum_probs=74.4
Q ss_pred CcceEEEeCCCCCCC------CHHHHHHHhhcCCCeeEEEee--cCCCCcEEEEEECCHHHHHHHHHccCCceeeee-EE
Q 008448 337 GSRQIYLTFPAESTF------TEDDVSNYFNTYGPVDDVRIP--CQQKRMFGFVTFASADTVKMILAKGNPHFVCGA-RV 407 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~------TEedLr~~Fs~fG~V~~V~I~--~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr-~V 407 (565)
..++|||+| |++.+ |+++|+++|++||+|.+|+|+ +|+++|||||+|.+.++|++|+..+|+..|+|+ .|
T Consensus 14 ~~~~l~V~n-Lp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDN-VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEES-CCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeC-CCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 468999999 99999 789999999999999999998 378999999999999999999999999999999 99
Q ss_pred EEEecccCcc
Q 008448 408 LVKPYREKSK 417 (565)
Q Consensus 408 ~Vk~A~~K~k 417 (565)
.|.++.+..+
T Consensus 93 ~V~~a~~~~k 102 (105)
T 2nlw_A 93 RVNLFTDFDK 102 (105)
T ss_dssp EEECSCCCCC
T ss_pred EEEEcchHhh
Confidence 9999987644
No 55
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=131.90 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=75.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
....++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~n-lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVAN-LDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEES-CCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 34578999999 999999999999999999999999985 66799999999999999999999999999999999999
Q ss_pred cccCcch
Q 008448 412 YREKSKL 418 (565)
Q Consensus 412 A~~K~k~ 418 (565)
+......
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9765443
No 56
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=133.44 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=73.0
Q ss_pred CCCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCc--eeeeeEEEEE
Q 008448 333 PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPH--FVCGARVLVK 410 (565)
Q Consensus 333 ~~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~--~i~Gr~V~Vk 410 (565)
...+++++|||+| |++++|+++|+++|++||+|.+|+|++ .||||||+|.+.++|++|++.+|+. .|+||+|.|.
T Consensus 16 ~~~~ps~~l~V~N-Lp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 16 HKTPASPVVHIRG-LIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp -CCCCCSEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred ccCCCCcEEEEeC-CCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 3456789999999 999999999999999999999999986 6899999999999999999998765 4889999999
Q ss_pred ecccCc
Q 008448 411 PYREKS 416 (565)
Q Consensus 411 ~A~~K~ 416 (565)
+++.+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998764
No 57
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.62 E-value=1.4e-15 Score=132.73 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=72.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....++|||+| |++++|+++|+++|++||+|.+|+|+. |+++|||||+|.+.++|++|++.+ ++.|+|+.|.|.
T Consensus 22 ~~~~~~lfV~n-Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 22 GSSGCKMFIGG-LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp ----CCEEEES-CCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 34568999999 999999999999999999999999985 778999999999999999999997 599999999999
Q ss_pred ecccCcc
Q 008448 411 PYREKSK 417 (565)
Q Consensus 411 ~A~~K~k 417 (565)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9988764
No 58
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.9e-16 Score=131.90 Aligned_cols=84 Identities=17% Similarity=0.277 Sum_probs=77.5
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..++|||+| |++.+|+++|+++|++||+|.+|+|+. |+++|||||+|.+.++|++|++.+|+..|+|+.|.|.++
T Consensus 7 ~~~~l~V~n-lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGN-IPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEES-CCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeC-CCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 458999999 999999999999999999999999984 677999999999999999999999999999999999999
Q ss_pred ccCcchhhh
Q 008448 413 REKSKLVDR 421 (565)
Q Consensus 413 ~~K~k~~~k 421 (565)
.++......
T Consensus 86 ~~~~~~~~~ 94 (104)
T 1p1t_A 86 ASEKNKEEL 94 (104)
T ss_dssp TCTTHHHHH
T ss_pred CCccchhhh
Confidence 988765543
No 59
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=9.7e-16 Score=130.08 Aligned_cols=82 Identities=22% Similarity=0.167 Sum_probs=75.6
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCee-EEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeE---
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVD-DVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGAR--- 406 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~-~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~--- 406 (565)
....++|||+| |++++|+++|+++|++||+|. +|+|+. ++++|||||+|.+.++|++|++.+|+..++|+.
T Consensus 6 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGD-LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECS-CCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeC-CCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 34678999999 999999999999999999999 999984 678899999999999999999999999999999
Q ss_pred -EEEEecccCcc
Q 008448 407 -VLVKPYREKSK 417 (565)
Q Consensus 407 -V~Vk~A~~K~k 417 (565)
|+|.++++...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999987643
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.62 E-value=8.7e-16 Score=129.20 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=73.3
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
...++|||+| |++.+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.++
T Consensus 14 ~~~~~l~v~n-lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGN-LEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEEC-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEEC-CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4568999999 999999999999999999999999985 677999999999999999999999999999999999998
Q ss_pred cc
Q 008448 413 RE 414 (565)
Q Consensus 413 ~~ 414 (565)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 61
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=8.2e-16 Score=134.18 Aligned_cols=81 Identities=21% Similarity=0.421 Sum_probs=75.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
.+..++|||+| |+..+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..|+|+.|.|.
T Consensus 23 ~~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGS-LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEEC-CCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34678999999 999999999999999999999999984 6789999999999999999999999999999999999
Q ss_pred ecccCc
Q 008448 411 PYREKS 416 (565)
Q Consensus 411 ~A~~K~ 416 (565)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998875
No 62
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=1.7e-15 Score=125.65 Aligned_cols=75 Identities=24% Similarity=0.419 Sum_probs=69.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++. +++.|+|+.|.|++
T Consensus 9 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 9 EDAGKMFVGG-LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp SCTTEEEEEC-CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 4668999999 999999999999999999999999984 77899999999999999999976 68899999999998
Q ss_pred c
Q 008448 412 Y 412 (565)
Q Consensus 412 A 412 (565)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 63
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=7.2e-16 Score=134.68 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=74.0
Q ss_pred CcceEEEeCCCCCCCCHHHHH---HHhhcCCCeeEEEeec-------CCCCcEEEEEECCHHHHHHHHHccCCceeeeeE
Q 008448 337 GSRQIYLTFPAESTFTEDDVS---NYFNTYGPVDDVRIPC-------QQKRMFGFVTFASADTVKMILAKGNPHFVCGAR 406 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr---~~Fs~fG~V~~V~I~~-------gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~ 406 (565)
..++|||+| |++++|+++|+ ++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.||++.|+|+.
T Consensus 14 ~~~~l~V~n-Lp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 14 QKNLVFVVG-LSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CSSCEEEEE-ECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEEC-CCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 567999999 99999999999 9999999999999995 256799999999999999999999999999999
Q ss_pred EEEEecccCc
Q 008448 407 VLVKPYREKS 416 (565)
Q Consensus 407 V~Vk~A~~K~ 416 (565)
|.|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999999876
No 64
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=7.9e-16 Score=131.30 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=72.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
..++|||+| |+.++|+++|+++|++||.|.+|+|+. ++|||||+|.+.++|++|+..+|+..++|+.|.|.++++|
T Consensus 26 ~~~~l~V~n-lp~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGN-IPHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEES-CCTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcC-CCcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 468999999 999999999999999999999999984 8999999999999999999999999999999999999875
No 65
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=7.6e-16 Score=132.28 Aligned_cols=83 Identities=28% Similarity=0.446 Sum_probs=76.5
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....++|||+| |++.+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++. |++.|+|+.|.|.
T Consensus 13 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 13 ADEIGKLFVGG-LDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp SSSSSEECCBS-CCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 34668999999 999999999999999999999999985 67899999999999999999999 9999999999999
Q ss_pred ecccCcchh
Q 008448 411 PYREKSKLV 419 (565)
Q Consensus 411 ~A~~K~k~~ 419 (565)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 999876543
No 66
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.6e-16 Score=137.98 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=75.3
Q ss_pred CCCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccC--CceeeeeEEEEE
Q 008448 333 PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN--PHFVCGARVLVK 410 (565)
Q Consensus 333 ~~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN--~~~i~Gr~V~Vk 410 (565)
...+.+++|||+| |++++||++|+++|++||.|.+|+|+. .||||||+|++.++|++|++.++ +..|+|++|.|.
T Consensus 26 ~~~~ps~~LfVgN-Lp~~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 26 SAGVPSRVIHIRK-LPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCSSCCSEEEEES-CCTTCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred ccCCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 3445678999999 999999999999999999999999998 48999999999999999999876 468999999999
Q ss_pred ecccCcchh
Q 008448 411 PYREKSKLV 419 (565)
Q Consensus 411 ~A~~K~k~~ 419 (565)
+++++....
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 998876543
No 67
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-15 Score=131.58 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=73.6
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHcc--CCceeeeeEEEEEec
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG--NPHFVCGARVLVKPY 412 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~l--N~~~i~Gr~V~Vk~A 412 (565)
.+.+++|||+| |++++||++|+++|++||.|.+|.|+. .||||||+|.+.++|++|++.+ ++..|+|++|.|.++
T Consensus 12 ~~p~~~l~V~n-Lp~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRK-LPGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEES-CCTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 34678999999 999999999999999999999999987 4899999999999999999965 578899999999999
Q ss_pred ccCcch
Q 008448 413 REKSKL 418 (565)
Q Consensus 413 ~~K~k~ 418 (565)
+++...
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 877654
No 68
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.6e-15 Score=128.96 Aligned_cols=80 Identities=19% Similarity=0.328 Sum_probs=74.3
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
...++|||+| |++++|+++|+++|++|| |.+|+|+. ++++|||||+|.+.++|++|+ .+|++.|+|+.|.|.
T Consensus 13 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGN-LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEES-CCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCEEEEeC-CCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 4568999999 999999999999999999 99999984 677999999999999999999 999999999999999
Q ss_pred ecccCcch
Q 008448 411 PYREKSKL 418 (565)
Q Consensus 411 ~A~~K~k~ 418 (565)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987653
No 69
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.9e-15 Score=129.50 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=74.5
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....++|||+| |++++|+++|+++|++|| |.+|+|+. ++++|||||+|.+.++|++|+ .+|+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGN-LPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEES-CCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCeEEEEeC-CCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 34578999999 999999999999999997 99999994 678999999999999999999 899999999999999
Q ss_pred ecccCcch
Q 008448 411 PYREKSKL 418 (565)
Q Consensus 411 ~A~~K~k~ 418 (565)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99887643
No 70
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=1e-15 Score=138.02 Aligned_cols=82 Identities=27% Similarity=0.299 Sum_probs=76.6
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
.+..++|||+| |++++|+++|+++|++||+|.+|+|++ ++++|||||+|.+.++|++|++.+|+..|+|+.|.|.
T Consensus 43 ~~~~~~l~V~n-Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFG-LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEET-CTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999 999999999999999999999999984 6889999999999999999999999999999999999
Q ss_pred ecccCcc
Q 008448 411 PYREKSK 417 (565)
Q Consensus 411 ~A~~K~k 417 (565)
++++++.
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9988753
No 71
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=142.72 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=74.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCC--CeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYG--PVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG--~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
..++||||| |++++|+++|+++|++|| .|.+|+|+ +|++||||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 54 ~~~~lfVgn-Lp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGS-FSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEEC-CCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 457999999 999999999999999999 99999998 37899999999999999999999999999999999999
Q ss_pred ecccCcch
Q 008448 411 PYREKSKL 418 (565)
Q Consensus 411 ~A~~K~k~ 418 (565)
++.++...
T Consensus 133 ~a~~~~~~ 140 (156)
T 3n9u_C 133 PATRQNLS 140 (156)
T ss_dssp ECCHHHHH
T ss_pred EcCCCcch
Confidence 99876543
No 72
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=2.5e-16 Score=147.31 Aligned_cols=84 Identities=26% Similarity=0.441 Sum_probs=71.3
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |++++|+++|+++|++||.|..|+|+. ++++|||||+|.+.++|.+|+.. +++.|+|+.|.|.+
T Consensus 102 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 102 LTVKKIFVGG-IKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp -CCSEEEEEC-CTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCcceEEEeC-CCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 3558999999 999999999999999999999999984 67899999999999999999998 69999999999999
Q ss_pred cccCcchhhh
Q 008448 412 YREKSKLVDR 421 (565)
Q Consensus 412 A~~K~k~~~k 421 (565)
+.++......
T Consensus 180 a~~k~~~~~~ 189 (196)
T 1l3k_A 180 ALSKQEMASA 189 (196)
T ss_dssp CC--------
T ss_pred cCChhHhccc
Confidence 9998766543
No 73
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.3e-15 Score=128.97 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=74.0
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeee-----eEEEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG-----ARVLVK 410 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~G-----r~V~Vk 410 (565)
....+|||+| |++++|+++|+++|++||+|.+|+|+.. |||||+|.+.++|++|++.+|++.|+| +.|.|.
T Consensus 13 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSG-LPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEES-CCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 3568999999 9999999999999999999999999974 999999999999999999999999999 999999
Q ss_pred ecccCcch
Q 008448 411 PYREKSKL 418 (565)
Q Consensus 411 ~A~~K~k~ 418 (565)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99987654
No 74
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=6.1e-16 Score=124.85 Aligned_cols=71 Identities=32% Similarity=0.456 Sum_probs=67.4
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 340 kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
+|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++ +|++.|+|++|.|++|
T Consensus 1 ~l~v~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGG-LSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEEC-CCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEec-CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 699999 999999999999999999999999984 7789999999999999999998 8999999999999986
No 75
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=8.8e-16 Score=134.13 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=72.0
Q ss_pred CCcceEEEeCCCCC-CCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCC--ceeeeeEEEEEec
Q 008448 336 TGSRQIYLTFPAES-TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNP--HFVCGARVLVKPY 412 (565)
Q Consensus 336 ~~~~kIfVgn~L~~-~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~--~~i~Gr~V~Vk~A 412 (565)
..+++|||+| |++ ++||++|+++|++||+|.+|+|+. .||||||+|++.++|++|++.+|+ ..|+||+|.|.++
T Consensus 13 ~p~~~l~V~n-Lp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 13 ETRRVVHIMD-FQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCEEEEES-CCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCEEEEeC-CCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 4678999999 999 999999999999999999999997 579999999999999999998764 5699999999999
Q ss_pred ccCcc
Q 008448 413 REKSK 417 (565)
Q Consensus 413 ~~K~k 417 (565)
+.+..
T Consensus 90 ~~~~~ 94 (102)
T 1x4d_A 90 QKYKR 94 (102)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 87644
No 76
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.3e-15 Score=125.52 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=73.2
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
....++|||+| |++++|+++|+++|++||+|.+|+|+ ++||||+|.+.++|++|++.+|++.|+|+.|.|.++++
T Consensus 7 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGN-ISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEES-CCSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 34678999999 99999999999999999999999997 46999999999999999999999999999999999988
Q ss_pred Ccch
Q 008448 415 KSKL 418 (565)
Q Consensus 415 K~k~ 418 (565)
+...
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7543
No 77
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=134.12 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=76.1
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
..++|||+| |++++|+++|+++|++||.|.+|.|+. ++++|||||+|.+.++|++|++.+|+..|+|+.|.|.+++
T Consensus 6 ~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGG-LNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEEC-CTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 468999999 999999999999999999999999995 7789999999999999999999999999999999999998
Q ss_pred cCcch
Q 008448 414 EKSKL 418 (565)
Q Consensus 414 ~K~k~ 418 (565)
++...
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 77654
No 78
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=136.60 Aligned_cols=83 Identities=25% Similarity=0.445 Sum_probs=76.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..|+|+.|.|.
T Consensus 39 ~~~~~~l~V~n-Lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNY-IPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEES-CSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34668999999 999999999999999999999999984 5679999999999999999999999999999999999
Q ss_pred ecccCcch
Q 008448 411 PYREKSKL 418 (565)
Q Consensus 411 ~A~~K~k~ 418 (565)
+++++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99987654
No 79
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.7e-15 Score=130.40 Aligned_cols=81 Identities=21% Similarity=0.326 Sum_probs=74.6
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |++.+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+ .|+|+.|.|.+
T Consensus 15 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 15 TTFTKIFVGG-LPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp CSSSEEEEEC-CCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 4668999999 999999999999999999999999985 67899999999999999999999987 89999999999
Q ss_pred cccCcch
Q 008448 412 YREKSKL 418 (565)
Q Consensus 412 A~~K~k~ 418 (565)
+.++.+.
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9876443
No 80
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.60 E-value=3.7e-15 Score=132.09 Aligned_cols=83 Identities=8% Similarity=0.099 Sum_probs=76.8
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
.....++|||+| |++.+|+++|+++|++||+|.+|+|+. |+++|||||+|.+.++|++|++.+|+..|+|+.|.|.
T Consensus 31 ~~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSN-LDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEES-CCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 445678999999 999999999999999999999999985 6789999999999999999999999999999999999
Q ss_pred ecccCcc
Q 008448 411 PYREKSK 417 (565)
Q Consensus 411 ~A~~K~k 417 (565)
+|.++..
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987643
No 81
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=125.48 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=73.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
...++|||+| |++++|+++|+++|++| .|.+|+|++ |+++|||||+|.+.++|++|+. +|+..|+|+.|.|.++
T Consensus 8 ~~~~~l~v~n-Lp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRG-APFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEEC-CCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEEC-CCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4568999999 99999999999999999 999999985 7789999999999999999999 9999999999999999
Q ss_pred ccCcc
Q 008448 413 REKSK 417 (565)
Q Consensus 413 ~~K~k 417 (565)
.++.+
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 88754
No 82
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=2e-15 Score=129.57 Aligned_cols=79 Identities=14% Similarity=0.254 Sum_probs=73.6
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
...++|||+| |++++|+++|+++|++||+|.+|+|+ +|||||+|.+.++|++|++.+|++.|+|+.|.|.+++++
T Consensus 9 ~~~~~l~V~n-l~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRN-LANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEEC-CCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 4568999999 99999999999999999999999996 579999999999999999999999999999999999987
Q ss_pred cchh
Q 008448 416 SKLV 419 (565)
Q Consensus 416 ~k~~ 419 (565)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6554
No 83
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=128.96 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=73.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
.+..++|||+| |++++|+++|+++|++||.|.++.++. ++++|||||+|.+.++|++|++.+|+..|+|+.|.|.
T Consensus 12 ~~~~~~l~v~n-Lp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQN-MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEES-CCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44668999999 999999999999999999998777763 6789999999999999999999999999999999999
Q ss_pred ecccCc
Q 008448 411 PYREKS 416 (565)
Q Consensus 411 ~A~~K~ 416 (565)
++..+.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 987653
No 84
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.60 E-value=1.9e-15 Score=132.48 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=72.7
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
.+..++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..|+|+.|+|.
T Consensus 37 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYH-LPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEEC-SCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34668999999 999999999999999999999999984 6789999999999999999999999999999999999
Q ss_pred ecc
Q 008448 411 PYR 413 (565)
Q Consensus 411 ~A~ 413 (565)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 85
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=130.54 Aligned_cols=82 Identities=20% Similarity=0.259 Sum_probs=76.2
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCee--------EEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceee
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVD--------DVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVC 403 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~--------~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~ 403 (565)
...++|||+| |++++|+++|+++|++||.|. .|+|+. ++++|||||+|.+.++|++|++.+|++.|+
T Consensus 13 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQG-LNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCEEEEEC-CCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEcC-CCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 4668999999 999999999999999999999 699985 678999999999999999999999999999
Q ss_pred eeEEEEEecccCcch
Q 008448 404 GARVLVKPYREKSKL 418 (565)
Q Consensus 404 Gr~V~Vk~A~~K~k~ 418 (565)
|+.|.|.+++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999987654
No 86
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=129.22 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=73.4
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeE--------EEeec----CCCCcEEEEEECCHHHHHHHHHccCCce
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD--------VRIPC----QQKRMFGFVTFASADTVKMILAKGNPHF 401 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~--------V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~ 401 (565)
..+..++|||+| |++++|+++|+++|++||.|.+ |+|+. |+++|||||+|.+.++|++|++.+|+..
T Consensus 9 ~~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQG-LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEEC-CCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeC-CCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 345678999999 9999999999999999999999 99984 6789999999999999999999999999
Q ss_pred eeeeEEEEEecc
Q 008448 402 VCGARVLVKPYR 413 (565)
Q Consensus 402 i~Gr~V~Vk~A~ 413 (565)
++|+.|.|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 87
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=131.99 Aligned_cols=80 Identities=28% Similarity=0.432 Sum_probs=74.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++. |++.|+|+.|.|.++
T Consensus 26 ~~~~l~V~n-Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGG-LSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEEC-CTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 348999999 999999999999999999999999985 77899999999999999999999 999999999999999
Q ss_pred ccCcch
Q 008448 413 REKSKL 418 (565)
Q Consensus 413 ~~K~k~ 418 (565)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 988654
No 88
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=130.61 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=75.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCC-eeEEEee-c----CCCCcEEEEEECCHHHHHHHHHccC--CceeeeeEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGP-VDDVRIP-C----QQKRMFGFVTFASADTVKMILAKGN--PHFVCGARV 407 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~-V~~V~I~-~----gk~RGfaFVtF~~~e~A~~Al~~lN--~~~i~Gr~V 407 (565)
...++|||+| |++++|+++|+++|++||. |.+|.|+ . +++||||||+|.+.++|++|++.+| +..++|+.|
T Consensus 6 ~~~~~l~V~n-Lp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGG-IPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEEC-CCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeC-CCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 3568999999 9999999999999999999 9999998 2 6889999999999999999999996 589999999
Q ss_pred EEEecccCcch
Q 008448 408 LVKPYREKSKL 418 (565)
Q Consensus 408 ~Vk~A~~K~k~ 418 (565)
.|.++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999987654
No 89
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=1.7e-15 Score=134.19 Aligned_cols=84 Identities=13% Similarity=0.209 Sum_probs=77.4
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....++|||+| |++.+|+++|+++|++||.|.+|.|+ +++++|||||+|.+.++|++|++.+|+..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTG-VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEES-CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34568999999 99999999999999999999999998 37789999999999999999999999999999999999
Q ss_pred ecccCcchh
Q 008448 411 PYREKSKLV 419 (565)
Q Consensus 411 ~A~~K~k~~ 419 (565)
++.++....
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998876543
No 90
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.8e-15 Score=129.42 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=72.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeE-EEee---cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD-VRIP---CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~-V~I~---~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
....+|||+| |++++|+++|+++|++||.|.+ |+|+ +++++|||||+|.+.++|++|++. |++.|+||.|.|.+
T Consensus 13 ~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRG-LPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEES-CCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 4568999999 9999999999999999999998 8887 388999999999999999999998 99999999999999
Q ss_pred cccCc
Q 008448 412 YREKS 416 (565)
Q Consensus 412 A~~K~ 416 (565)
+.++.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87543
No 91
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=128.26 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=74.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
.+..++|||+| |++.+|+++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.+|++.|+|+.|.|.++++
T Consensus 12 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 12 FTQRSRLFVGN-LPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCTTEEEEES-CCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 35678999999 999999999999999999999999986 689999999999999999999999999999999999988
Q ss_pred Ccc
Q 008448 415 KSK 417 (565)
Q Consensus 415 K~k 417 (565)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 92
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=127.66 Aligned_cols=83 Identities=16% Similarity=0.180 Sum_probs=73.1
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
.....++|||+| |++++|+++|+++|++||.|.-++..+++++|||||+|.+.++|++|++.+|++.|+|+.|.|.+++
T Consensus 11 ~~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 11 WSGESKTLVLSN-LSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CSCCCSEEEEES-CCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCCCEEEEeC-CCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 344679999999 9999999999999999998833322247899999999999999999999999999999999999998
Q ss_pred cCcc
Q 008448 414 EKSK 417 (565)
Q Consensus 414 ~K~k 417 (565)
++..
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 93
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=132.11 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=76.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCe----eEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPV----DDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V----~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
.+..++|||+| |++++|+++|+++|++||.| ..+++.+++++|||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 22 ~~~~~~l~V~n-Lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKN-LSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEEC-CCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34678999999 99999999999999999999 67777789999999999999999999999999999999999999
Q ss_pred ecccCcch
Q 008448 411 PYREKSKL 418 (565)
Q Consensus 411 ~A~~K~k~ 418 (565)
+++++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99987654
No 94
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.60 E-value=1.8e-15 Score=132.03 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=75.0
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
...++|||+| |++.+|+++|+++|++||.|.+|+|+. ++++|||||+|.+.++|++|+..+|+..++|+.|.|.++.+
T Consensus 6 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRN-LPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEES-CCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4568999999 999999999999999999999999986 67899999999999999999999999999999999999986
Q ss_pred Cc
Q 008448 415 KS 416 (565)
Q Consensus 415 K~ 416 (565)
+.
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 54
No 95
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=133.32 Aligned_cols=79 Identities=18% Similarity=0.395 Sum_probs=73.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..++|||+| |++++|+++|+++|++||.|.+|+|+. ++++|||||+|.+.++|++|+ .+|++.|+|+.|.|.++
T Consensus 24 ~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQ-LAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEES-CCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 348999999 999999999999999999999999984 778999999999999999999 99999999999999999
Q ss_pred ccCcc
Q 008448 413 REKSK 417 (565)
Q Consensus 413 ~~K~k 417 (565)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87543
No 96
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=130.08 Aligned_cols=82 Identities=12% Similarity=0.153 Sum_probs=76.0
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhc-CCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCce-eeeeEEEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNT-YGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHF-VCGARVLVK 410 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~-fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~-i~Gr~V~Vk 410 (565)
...++|||+| |++++|+++|+++|++ ||.|.+|+|+. ++++|||||+|.+.++|++|++.+|+.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGD-LTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEEC-CCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 4568999999 9999999999999999 99999999985 7789999999999999999999999999 999999999
Q ss_pred ecccCcch
Q 008448 411 PYREKSKL 418 (565)
Q Consensus 411 ~A~~K~k~ 418 (565)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99876543
No 97
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.4e-15 Score=131.98 Aligned_cols=82 Identities=13% Similarity=0.059 Sum_probs=75.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCe-eEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPV-DDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V-~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....++|||+| |++++|+++|+++|++||.| .+|+|++ ++++|||||+|.+.++|++|++. |++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITN-IPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEES-CCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeC-cCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34568999999 99999999999999999999 8899985 78999999999999999999998 9999999999999
Q ss_pred ecccCcch
Q 008448 411 PYREKSKL 418 (565)
Q Consensus 411 ~A~~K~k~ 418 (565)
++.++...
T Consensus 90 ~a~~~~~~ 97 (114)
T 2cpy_A 90 VVTLEDMR 97 (114)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99876543
No 98
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.59 E-value=3e-15 Score=128.80 Aligned_cols=78 Identities=10% Similarity=0.139 Sum_probs=73.5
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
....++|||+| |++.+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSN-LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEES-CCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35679999999 999999999999999999999999994 67899999999999999999999999999999999998
Q ss_pred cc
Q 008448 412 YR 413 (565)
Q Consensus 412 A~ 413 (565)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 99
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.6e-15 Score=130.18 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=74.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccCc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K~ 416 (565)
..++|||+| |+..+|+++|+++|++||+|.+|+|+. .+|||||+|.+.++|++|+..+|++.|+|+.|.|.+++++.
T Consensus 24 ~~~~l~V~n-l~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 24 KNCTVYCGG-IASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SCCEEEEEC-CSSCCCHHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCcEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 568999999 999999999999999999999999998 48999999999999999999999999999999999998876
Q ss_pred ch
Q 008448 417 KL 418 (565)
Q Consensus 417 k~ 418 (565)
..
T Consensus 101 ~~ 102 (109)
T 1x4g_A 101 DM 102 (109)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 100
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.59 E-value=8.2e-16 Score=131.73 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=71.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
...++|||+| |++++|+++|+++|++|| |.+|+|+. |+++|||||+|.+.++|++|+ .+|+..|+|+.|.|.
T Consensus 17 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 17 SPPYTAFLGN-LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ---CEEEESC-CSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 4668999999 999999999999999999 99999984 668999999999999999999 899999999999999
Q ss_pred ecccCc
Q 008448 411 PYREKS 416 (565)
Q Consensus 411 ~A~~K~ 416 (565)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998875
No 101
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.8e-15 Score=130.97 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=72.4
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccC--CceeeeeEEEEEec
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN--PHFVCGARVLVKPY 412 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN--~~~i~Gr~V~Vk~A 412 (565)
.+.+++|||+| |++++||++|+++|++||.|.+|.|+. .||||||+|.+.++|++|++.++ +..|+|++|.|.++
T Consensus 12 ~~p~~~l~V~n-Lp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRG-LCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEES-CCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 34678999999 999999999999999999999999987 58999999999999999999775 45699999999999
Q ss_pred ccCcc
Q 008448 413 REKSK 417 (565)
Q Consensus 413 ~~K~k 417 (565)
+++..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87654
No 102
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.59 E-value=3.9e-15 Score=127.28 Aligned_cols=78 Identities=14% Similarity=0.364 Sum_probs=72.3
Q ss_pred CCCCcceEEEeCCCCC-CCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 334 IVTGSRQIYLTFPAES-TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~-~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..+..++|||+| |++ ++|+++|+++|++||.|.+|+|. +|||||+|.+.++|++|++.+|+..++|++|.|.++
T Consensus 18 ~~~~~~~l~V~n-Lp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 18 GSHMKSRLFIGN-LPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp -CCTTCEEEEES-CCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCCCEEEEeC-CCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 345679999999 998 99999999999999999999994 899999999999999999999999999999999999
Q ss_pred ccCc
Q 008448 413 REKS 416 (565)
Q Consensus 413 ~~K~ 416 (565)
+++.
T Consensus 93 ~~~~ 96 (97)
T 2xnq_A 93 SSNA 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 103
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.59 E-value=5.1e-15 Score=132.61 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=72.3
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
.....++|||+| |+..+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|
T Consensus 59 ~~~~~~~l~v~n-lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 59 SATTKRVLYVGG-LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SCSSCCEEEEEC-CCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCcEEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999 999999999999999999999999984 778999999999999999999999999999999999
Q ss_pred Eec
Q 008448 410 KPY 412 (565)
Q Consensus 410 k~A 412 (565)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 104
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.8e-15 Score=126.32 Aligned_cols=80 Identities=24% Similarity=0.341 Sum_probs=73.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|+.. ++.|+|+.|.|.+
T Consensus 13 ~~~~~l~v~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 13 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCEEEES-CCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEEC
T ss_pred CCCCEEEEEc-CCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEe
Confidence 4568999999 999999999999999999999999984 77899999999999999999995 7899999999999
Q ss_pred cccCcch
Q 008448 412 YREKSKL 418 (565)
Q Consensus 412 A~~K~k~ 418 (565)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9987654
No 105
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=3.2e-15 Score=126.22 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=64.2
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
.+...+||||| |++++||++|+++|++||+|.+|+|++. +||||||+|.+.++|+++... .+.++|++|.|.++.+
T Consensus 8 ~~~~~~l~V~~-Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~~~~~--~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGR-CTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQSLCGE--DLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEES-CCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHHHTTC--EEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHHHcCC--CcccCCEEEEEEEcCC
Confidence 35678999999 9999999999999999999999999974 899999999999999954222 4556699999999998
Q ss_pred Ccc
Q 008448 415 KSK 417 (565)
Q Consensus 415 K~k 417 (565)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 754
No 106
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.1e-15 Score=124.47 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=72.2
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
...++|||+| |++++|+++|+++|++||+|.+|+|+ ++||||+|.+.++|++|++.+|++.++|+.|.|.+++++
T Consensus 7 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 7 GNTWKIFVGN-VSAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCSCCEEEES-CCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 4678999999 99999999999999999999999997 469999999999999999999999999999999999887
Q ss_pred cc
Q 008448 416 SK 417 (565)
Q Consensus 416 ~k 417 (565)
..
T Consensus 82 ~~ 83 (90)
T 2dnp_A 82 QK 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 107
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=125.51 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=66.5
Q ss_pred cceEEEeCCCCCCC------CHHHHHHHhhcCCCeeEEEeec--CCCCcEEEEEECCHHHHHHHHHccCCceeeee-EEE
Q 008448 338 SRQIYLTFPAESTF------TEDDVSNYFNTYGPVDDVRIPC--QQKRMFGFVTFASADTVKMILAKGNPHFVCGA-RVL 408 (565)
Q Consensus 338 ~~kIfVgn~L~~~~------TEedLr~~Fs~fG~V~~V~I~~--gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr-~V~ 408 (565)
+++|||+| ||+.+ |+++|+++|++||+|.+|+|+. |+++|||||+|.+.++|++|++.+|+..|+|+ +|+
T Consensus 1 ~~~l~V~n-Lp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDN-VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEES-CCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeC-CCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 36899999 99999 7899999999999999999984 78899999999999999999999999999999 887
Q ss_pred E
Q 008448 409 V 409 (565)
Q Consensus 409 V 409 (565)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 108
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.58 E-value=3.3e-15 Score=137.10 Aligned_cols=82 Identities=22% Similarity=0.298 Sum_probs=76.6
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |++++|+++|+++|++||+|.+|+|+. |+++|||||+|.+.++|++|++.+|++.|+|+.|.|.+
T Consensus 68 ~~~~~l~v~n-l~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 68 EGMTSLKVDN-LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CBCCEEEEES-CCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4568999999 999999999999999999999999984 78999999999999999999999999999999999999
Q ss_pred cccCcch
Q 008448 412 YREKSKL 418 (565)
Q Consensus 412 A~~K~k~ 418 (565)
+.++...
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9887543
No 109
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.9e-16 Score=126.78 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=71.3
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
+..++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..|+|+.++|.+
T Consensus 3 ~~~~~l~v~n-lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRG-LQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEES-CCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4678999999 999999999999999999999999984 67899999999999999999999999999999998876
Q ss_pred cc
Q 008448 412 YR 413 (565)
Q Consensus 412 A~ 413 (565)
..
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 110
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=5.3e-16 Score=129.50 Aligned_cols=78 Identities=26% Similarity=0.379 Sum_probs=69.5
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
++|||+| |+.++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.+ |++|+..+|+..++|+.|.|++|.+
T Consensus 2 ~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGN-LVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEE-ECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECC-CCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 6899999 999999999999999999999999984 778999999999999 9999999999999999999999988
Q ss_pred Ccch
Q 008448 415 KSKL 418 (565)
Q Consensus 415 K~k~ 418 (565)
+...
T Consensus 80 ~~~~ 83 (90)
T 2ki2_A 80 KKSL 83 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 111
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.58 E-value=4e-15 Score=136.87 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=77.1
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
.....++|||+| |++.+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|
T Consensus 35 ~~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGN-LSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344678999999 999999999999999999999999984 678999999999999999999999999999999999
Q ss_pred EecccCcch
Q 008448 410 KPYREKSKL 418 (565)
Q Consensus 410 k~A~~K~k~ 418 (565)
.+++++...
T Consensus 114 ~~a~~~~~~ 122 (156)
T 1h2v_Z 114 DWDAGFKEG 122 (156)
T ss_dssp EEESCCCTT
T ss_pred EECCCCCCc
Confidence 999876543
No 112
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=123.63 Aligned_cols=73 Identities=23% Similarity=0.365 Sum_probs=68.9
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.++ +.++|+.|.|++|.
T Consensus 1 ~~l~v~n-lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGG-LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEES-CCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred CEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence 4799999 999999999999999999999999984 6789999999999999999999998 99999999999873
No 113
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=123.63 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=72.7
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcC--CCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTY--GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~f--G~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
....++|||+| |++.+|+++|+++|++| |.|.+|+++ ||||||+|.+.++|++|+..+|++.|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 12 MSSVKILYVRN-LMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SSCCCEEEEES-CCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred cCCcCEEEEeC-CCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 44678999999 99999999999999999 999999875 689999999999999999999999999999999999
Q ss_pred ccCcc
Q 008448 413 REKSK 417 (565)
Q Consensus 413 ~~K~k 417 (565)
+++.+
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88764
No 114
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=137.12 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=74.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeE--EEeec----CCCCcEEEEEECCHHHHHHHHHccCCc----eeeee
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD--VRIPC----QQKRMFGFVTFASADTVKMILAKGNPH----FVCGA 405 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~--V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~----~i~Gr 405 (565)
...++|||+| |++++||++|+++|++||.|.. |+|++ |++||||||+|.+. +|.+|+..+|+. .|+||
T Consensus 21 ~~~~~lfV~n-L~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 21 NANDTIILRN-LNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp CCCCEEEECS-CCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 4568999999 9999999999999999999976 99984 78999999999999 999999999999 99999
Q ss_pred EEEEEecccCcch
Q 008448 406 RVLVKPYREKSKL 418 (565)
Q Consensus 406 ~V~Vk~A~~K~k~ 418 (565)
.|.|++++++.+.
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999886543
No 115
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=1.4e-15 Score=127.86 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=70.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
+..++|||+| |++++|+++|+++|++||.|.++.++. ++++|||||+|.+.++|++|++.+|++.|+|+.|.|.+
T Consensus 13 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQN-MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEEC-CCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 4568999999 999999999999999999999887774 67899999999999999999999999999999999998
Q ss_pred cc
Q 008448 412 YR 413 (565)
Q Consensus 412 A~ 413 (565)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 116
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=3.7e-15 Score=131.68 Aligned_cols=78 Identities=19% Similarity=0.416 Sum_probs=73.0
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
.++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|+ .+|++.|+|+.|.|.+++
T Consensus 36 ~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGN-VDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEE-ECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 47999999 999999999999999999999999984 788999999999999999999 899999999999999998
Q ss_pred cCcc
Q 008448 414 EKSK 417 (565)
Q Consensus 414 ~K~k 417 (565)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6544
No 117
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=4.5e-15 Score=129.63 Aligned_cols=77 Identities=17% Similarity=0.324 Sum_probs=72.6
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
...++|||+| |++++|+++|+++|++||+|.+|+|+ +|||||+|.+.++|++|++.+|+..|+|+.|.|.+++++
T Consensus 29 ~~~~~l~V~n-Lp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 29 LSNTRLFVRP-FPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CSCSEEEECS-SCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCEEEEEC-CCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 4668999999 99999999999999999999999998 799999999999999999999999999999999999887
Q ss_pred cc
Q 008448 416 SK 417 (565)
Q Consensus 416 ~k 417 (565)
.+
T Consensus 104 ~~ 105 (108)
T 2jvo_A 104 AK 105 (108)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 118
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.1e-15 Score=127.04 Aligned_cols=78 Identities=14% Similarity=0.390 Sum_probs=72.0
Q ss_pred CCcceEEEeCCCCC-CCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 336 TGSRQIYLTFPAES-TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 336 ~~~~kIfVgn~L~~-~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
+..++|||+| |++ .+|+++|+++|++||+|.+|+|+ +|||||+|.+.++|++|++.+|+..++|+.|.|.++++
T Consensus 8 ~~~~~l~V~n-lp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 8 PPKSRLFIGN-LPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp -CCEEEEEES-STTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCEEEEeC-CCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 4678999999 998 99999999999999999999995 79999999999999999999999999999999999987
Q ss_pred Ccch
Q 008448 415 KSKL 418 (565)
Q Consensus 415 K~k~ 418 (565)
+...
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6554
No 119
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.1e-15 Score=126.83 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=71.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCC-eeEEEeecCCCCcEEEEEECCHHHHHHHHHccCC-ceeeeeEEEEEecc
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGP-VDDVRIPCQQKRMFGFVTFASADTVKMILAKGNP-HFVCGARVLVKPYR 413 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~-V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~-~~i~Gr~V~Vk~A~ 413 (565)
...++|||+| |++++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.+|+ +.|+|+.|.|.+++
T Consensus 6 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 6 SGMNKLYIGN-LSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCCEEEEC-CCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 4668999999 9999999999999999999 6666663 689999999999999999999999 99999999999998
Q ss_pred cCcch
Q 008448 414 EKSKL 418 (565)
Q Consensus 414 ~K~k~ 418 (565)
++...
T Consensus 82 ~~~~~ 86 (93)
T 2cqh_A 82 SKKLR 86 (93)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 87553
No 120
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.7e-14 Score=122.46 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=71.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
...++|||+| + ++|+++|+++|++||+|.+|+|. +++|||||+|.+.++|++|+..+|++.|+|++|.|.++.++
T Consensus 13 ~~~~~l~V~n-~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYG-E--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEEC-S--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcC-C--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3568999999 5 89999999999999999999996 48999999999999999999999999999999999999887
Q ss_pred cch
Q 008448 416 SKL 418 (565)
Q Consensus 416 ~k~ 418 (565)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 121
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=2.1e-15 Score=128.68 Aligned_cols=78 Identities=21% Similarity=0.358 Sum_probs=73.6
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccCcch
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K~k~ 418 (565)
.+|||+| |++++|+++|+++|++||+|.+|+|+.. ++|||||+|.+.++|++|++.+|+..++|+.|.|.+++++...
T Consensus 1 ~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGN-LGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEEC-CCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 4899999 9999999999999999999999999986 7999999999999999999999999999999999999887643
No 122
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=3.2e-15 Score=126.19 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=74.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
...++|||+| |++.+|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++.+|+..|+|+.|.|.++.++
T Consensus 14 ~~~~~l~V~n-L~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKN-LSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEES-CCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 3568999999 99999999999999999999888 456889999999999999999999999999999999999999887
Q ss_pred cc
Q 008448 416 SK 417 (565)
Q Consensus 416 ~k 417 (565)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 123
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=4.4e-15 Score=130.12 Aligned_cols=77 Identities=9% Similarity=0.059 Sum_probs=72.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccCc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K~ 416 (565)
..++|||+| |++++|+++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.+|+..|+|+.|.|.++....
T Consensus 9 ~~~~l~V~n-Lp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKN-LPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEES-CCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 357999999 999999999999999999999999986 78999999999999999999999999999999999997643
No 124
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=3.3e-15 Score=132.81 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=73.0
Q ss_pred CCCcceEEEeCCCCCC-CCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccC--CceeeeeEEEEEe
Q 008448 335 VTGSRQIYLTFPAEST-FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN--PHFVCGARVLVKP 411 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~-~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN--~~~i~Gr~V~Vk~ 411 (565)
...+++|||+| |+++ +|+++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.+| +..|+||+|.|.+
T Consensus 22 ~~p~~~l~V~N-Lp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSN-LPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEES-CCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeC-CCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34678999999 9998 99999999999999999999986 78999999999999999999774 5679999999999
Q ss_pred cccCcch
Q 008448 412 YREKSKL 418 (565)
Q Consensus 412 A~~K~k~ 418 (565)
++.+...
T Consensus 99 a~~~~~~ 105 (112)
T 1x4f_A 99 SEKYKKL 105 (112)
T ss_dssp ECSCSSS
T ss_pred Ccccccc
Confidence 9876544
No 125
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=2.9e-15 Score=132.68 Aligned_cols=79 Identities=18% Similarity=0.137 Sum_probs=73.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCC---eeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGP---VDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~---V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
...++|||+| |++++|+++|+++|++||. |.+|+|++ |++||||||+|.+.++|++|++ +|++.|+||.|.|
T Consensus 15 ~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRG-LPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEES-CCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 3568999999 9999999999999999999 89999985 7889999999999999999999 8999999999999
Q ss_pred EecccCc
Q 008448 410 KPYREKS 416 (565)
Q Consensus 410 k~A~~K~ 416 (565)
.++.++.
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987553
No 126
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.5e-15 Score=129.76 Aligned_cols=76 Identities=24% Similarity=0.257 Sum_probs=70.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
...+|||+| |++++|+++|+++|++| .|.+|+|+. |+++|||||+|.+.++|++|+ .+|++.|+||.|.|..+.
T Consensus 15 ~~~~v~V~n-Lp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHG-MPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEEC-CCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 347999999 99999999999999999 899999985 789999999999999999999 579999999999999987
Q ss_pred cC
Q 008448 414 EK 415 (565)
Q Consensus 414 ~K 415 (565)
++
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 127
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.56 E-value=6e-15 Score=134.88 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=75.2
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
....++|||+| |++.+|+++|+++|++||.|.+|+|+.. ++|||||+|.+.++|++|+..+|+..|+|+.|.|.++++
T Consensus 70 ~~~~~~l~V~n-l~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 70 CPLDCKVYVGN-LGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp STTSCEEEEES-CCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 34678999999 9999999999999999999999999975 699999999999999999999999999999999999988
Q ss_pred Cc
Q 008448 415 KS 416 (565)
Q Consensus 415 K~ 416 (565)
++
T Consensus 148 ~~ 149 (150)
T 2i2y_A 148 EK 149 (150)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 128
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.6e-15 Score=137.43 Aligned_cols=79 Identities=13% Similarity=0.205 Sum_probs=73.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....++|||+| |+..+|+++|+++|++||.|.+|+|+. ++++|||||+|.+.++|.+|+..+|+..++|+.|.|.
T Consensus 84 ~~~~~~l~v~n-l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 84 SDDTFNLFVGD-LNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CTTCEEEEEES-CCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCceEEECC-CCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34678999999 999999999999999999999999984 6789999999999999999999999999999999999
Q ss_pred eccc
Q 008448 411 PYRE 414 (565)
Q Consensus 411 ~A~~ 414 (565)
+|++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9864
No 129
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.8e-15 Score=134.38 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=72.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
.....+|||+| |++++|+++|+++|++||.|.++.++ +|+++|||||+|.+.++|++||+ +|++.|+|+.|.|.
T Consensus 22 ~~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKG-LPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEEC-CCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeC-CCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34568999999 99999999999999999999884444 38889999999999999999999 89999999999999
Q ss_pred ecccCcc
Q 008448 411 PYREKSK 417 (565)
Q Consensus 411 ~A~~K~k 417 (565)
++.++..
T Consensus 100 ~a~~~~~ 106 (124)
T 1wel_A 100 PITKKGM 106 (124)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9987653
No 130
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.56 E-value=3.2e-15 Score=136.86 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=73.2
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCC---eeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGP---VDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~---V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
....+|||+| |++++|+++|+++|++||. |.+|+|++ |++||||||+|.+.++|++|++ +|++.|+||.|.|
T Consensus 42 ~~~~~lfVgn-Lp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRG-LPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEES-CCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 3568999999 9999999999999999999 89999985 7889999999999999999999 8999999999999
Q ss_pred EecccCc
Q 008448 410 KPYREKS 416 (565)
Q Consensus 410 k~A~~K~ 416 (565)
.++.++.
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 9987543
No 131
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.56 E-value=2.4e-15 Score=136.44 Aligned_cols=83 Identities=22% Similarity=0.283 Sum_probs=76.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..|+|+.|.|.+
T Consensus 45 ~~~~~l~V~n-Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDN-LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEEC-CCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3568999999 999999999999999999999999984 68899999999999999999999999999999999999
Q ss_pred cccCcchh
Q 008448 412 YREKSKLV 419 (565)
Q Consensus 412 A~~K~k~~ 419 (565)
++++....
T Consensus 124 a~~~~~~~ 131 (135)
T 2lea_A 124 ARYGRPPD 131 (135)
T ss_dssp CCCCCCCT
T ss_pred CCCCCCCc
Confidence 98876543
No 132
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.55 E-value=6.6e-15 Score=137.16 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=74.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |++.+|+++|+++|++||+|..|.|+. |+++|||||+|.+.++|++|+..+|+..|+|+.|.|.+
T Consensus 70 ~~~~~l~V~n-Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 70 VEGWILFVTS-IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp C-CEEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3568999999 999999999999999999999999984 67899999999999999999999999999999999999
Q ss_pred cccCcchhh
Q 008448 412 YREKSKLVD 420 (565)
Q Consensus 412 A~~K~k~~~ 420 (565)
+.++.....
T Consensus 149 a~~~~~~~~ 157 (165)
T 1rk8_A 149 CFVKGPKRV 157 (165)
T ss_dssp SEECC----
T ss_pred ecCCCCCCC
Confidence 998766543
No 133
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.2e-15 Score=127.61 Aligned_cols=80 Identities=18% Similarity=0.110 Sum_probs=71.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
....++|||+| |++++|+++|+++|++||. ++|+|++ +++||||||+|.+.++|++|++ +|++.|+||.|.|.+
T Consensus 12 ~~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRG-LPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEES-CCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34568999999 9999999999999999995 4999984 7889999999999999999995 699999999999999
Q ss_pred cccCcc
Q 008448 412 YREKSK 417 (565)
Q Consensus 412 A~~K~k 417 (565)
+.+...
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 876543
No 134
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=5.1e-15 Score=134.26 Aligned_cols=84 Identities=15% Similarity=0.206 Sum_probs=73.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeE--------EEee-cCCCCcEEEEEECCHHHHHHHHHccCCceeeee
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD--------VRIP-CQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~--------V~I~-~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr 405 (565)
....++|||+| |++++|+++|+++|++||.|.. +++. +++++|||||+|.+.++|.+|+..+|+..|+|+
T Consensus 42 ~~~~~~l~V~n-Lp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKN-LAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEE-ECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34568999999 9999999999999999999876 4444 489999999999999999999999999999999
Q ss_pred EEEEEecccCcchh
Q 008448 406 RVLVKPYREKSKLV 419 (565)
Q Consensus 406 ~V~Vk~A~~K~k~~ 419 (565)
.|.|.+++++....
T Consensus 121 ~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 121 PMVVQFARSARPKQ 134 (143)
T ss_dssp ECEEEECCCSCC--
T ss_pred EEEEEECCCCCCcc
Confidence 99999998765443
No 135
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.55 E-value=2.6e-15 Score=130.31 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=73.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCC---eeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGP---VDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~---V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
....+|||+| |++++|+++|+++|++||. |.+|+|++ |+++|||||+|.+.++|++|++ +|++.|+||.|.|
T Consensus 9 ~~~~~l~V~n-Lp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQG-LPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEEC-CCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeC-CCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 4568999999 9999999999999999998 89999985 7899999999999999999999 8999999999999
Q ss_pred EecccCc
Q 008448 410 KPYREKS 416 (565)
Q Consensus 410 k~A~~K~ 416 (565)
.++.++.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9998754
No 136
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-15 Score=129.31 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=72.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee----cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~----~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |++++|+++|+++|++||.|.. .++ ++++||||||+|.+.++|++|++ +|++.|+|+.|.|.+
T Consensus 15 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGN-LNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEEC-CCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 3568999999 9999999999999999999988 444 37899999999999999999999 999999999999999
Q ss_pred cccCcch
Q 008448 412 YREKSKL 418 (565)
Q Consensus 412 A~~K~k~ 418 (565)
++++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9887543
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=2.1e-15 Score=121.54 Aligned_cols=71 Identities=27% Similarity=0.509 Sum_probs=67.1
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 340 kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
||||+| |++++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++. +++.++|+.|.|++|
T Consensus 1 ~l~v~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGG-LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESC-CCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 699999 999999999999999999999999984 77899999999999999999997 789999999999875
No 138
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.54 E-value=9.2e-15 Score=126.88 Aligned_cols=76 Identities=14% Similarity=0.345 Sum_probs=71.2
Q ss_pred CCcceEEEeCCCCCC-CCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 336 TGSRQIYLTFPAEST-FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~-~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
+..++|||+| |++. +|+++|+++|++||+|.+|+| ++|||||+|.+.++|++|++.+|+..|+|+.|.|.++++
T Consensus 25 ~~~~~l~V~n-l~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 25 SINSRVFIGN-LNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TCSSEEEECS-CCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCcEEEEeC-CCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3558999999 9999 999999999999999999999 689999999999999999999999999999999999985
Q ss_pred Cc
Q 008448 415 KS 416 (565)
Q Consensus 415 K~ 416 (565)
+.
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 139
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=122.35 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=73.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEE-eecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVR-IPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~-I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
...++|||+| |++++|+++|+++|++||+|.+|+ |+..+..|.|||+|.+.++|++|+..+|+..|+|+.|.|.++.+
T Consensus 13 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRN-IPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEE-ECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEc-CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3568999999 999999999999999999999995 78766677799999999999999999999999999999999998
Q ss_pred Cc
Q 008448 415 KS 416 (565)
Q Consensus 415 K~ 416 (565)
+.
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 73
No 140
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=126.25 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=73.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCcee--------ee
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFV--------CG 404 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i--------~G 404 (565)
...++|||+| |++.+|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..| .+
T Consensus 23 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISN-LPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEES-CCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3568999999 999999999999999999999999985 67899999999999999999999999999 57
Q ss_pred eEEEEEecccCc
Q 008448 405 ARVLVKPYREKS 416 (565)
Q Consensus 405 r~V~Vk~A~~K~ 416 (565)
+.|.|+++.++.
T Consensus 102 ~~l~v~~a~p~~ 113 (114)
T 1x5o_A 102 EPLLCKFSGPSS 113 (114)
T ss_dssp SCBEEEECCCSC
T ss_pred CceeEEccCCCC
Confidence 889999998753
No 141
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=1.4e-14 Score=137.04 Aligned_cols=79 Identities=10% Similarity=0.081 Sum_probs=73.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeee--eEEEEEeccc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG--ARVLVKPYRE 414 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~G--r~V~Vk~A~~ 414 (565)
...+|||+| |++.+|+++|+++|++||+|.+|+|.+.+++|||||+|.+.++|++|++.||+..|.| ++|+|.++++
T Consensus 45 ~vl~l~VgN-L~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 45 PVLRIIVEN-LFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CEEEEEECS-CCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred ceEEEEEeC-cCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 346899999 9999999999999999999999999877778999999999999999999999999966 9999999998
Q ss_pred Cc
Q 008448 415 KS 416 (565)
Q Consensus 415 K~ 416 (565)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 75
No 142
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=129.50 Aligned_cols=78 Identities=10% Similarity=0.157 Sum_probs=71.8
Q ss_pred CCcceEEE--eCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCcee-----eeeEEE
Q 008448 336 TGSRQIYL--TFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV-----CGARVL 408 (565)
Q Consensus 336 ~~~~kIfV--gn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i-----~Gr~V~ 408 (565)
.+.++||| || |++++||++|+++|++||+|.+|.|++ .||||||+|.+.++|++|++.||+..+ .|+.|.
T Consensus 23 ~pt~~L~V~Ng~-L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 23 YATQSLVVANGG-LGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp SCCSEEEEETCT-GGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCEEEEECCC-CCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 35688999 99 999999999999999999999999987 589999999999999999999999998 799999
Q ss_pred EEecccCc
Q 008448 409 VKPYREKS 416 (565)
Q Consensus 409 Vk~A~~K~ 416 (565)
|..++...
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99987543
No 143
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.54 E-value=1.1e-14 Score=121.64 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=71.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccCc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K~ 416 (565)
..++|||+| |++++|+++|+++|++| .|.+|+|. ++||||||+|.+.++|++|++.+|+..++|++|.|.++..+.
T Consensus 4 ~~~~l~V~n-Lp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKN-LPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEES-CCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 457999999 99999999999999999 99999997 589999999999999999999999999999999999987654
No 144
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=123.02 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=72.4
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee-cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP-CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~-~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
....++|||+| |++++|+++|+++|++|+.|.-+.-. +++++|||||+|.+.++|++|++.+|++.|+|+.|.|.+++
T Consensus 12 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 12 SQPSKTLFVKG-LSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SCCCSSEEEEC-CCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeC-CCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 44678999999 99999999999999988654444332 37789999999999999999999999999999999999999
Q ss_pred cCcch
Q 008448 414 EKSKL 418 (565)
Q Consensus 414 ~K~k~ 418 (565)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87653
No 145
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.53 E-value=4.9e-15 Score=136.58 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=73.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
...++|||+| |+..+|+++|+++|++||.|..+ ..+++++|||||+|.+.++|.+|+..+|+..|+|+.|.|.++.+|
T Consensus 97 ~~~~~l~v~n-lp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKN-LSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEES-CCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeC-CCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 4568999999 99999999999999999999988 556889999999999999999999999999999999999999887
Q ss_pred c
Q 008448 416 S 416 (565)
Q Consensus 416 ~ 416 (565)
.
T Consensus 175 ~ 175 (175)
T 1fje_B 175 G 175 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.53 E-value=4.6e-15 Score=126.76 Aligned_cols=80 Identities=21% Similarity=0.416 Sum_probs=72.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
..++|||+| |++++|+++|+++|++||.|.+|+|+. ++++|||||+|.+.++|++|++ |++.++|+.|.|.++.
T Consensus 8 ~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGG-IDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEC-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 458999999 999999999999999999999999995 7789999999999999999998 7999999999999998
Q ss_pred cCcchh
Q 008448 414 EKSKLV 419 (565)
Q Consensus 414 ~K~k~~ 419 (565)
++....
T Consensus 85 ~~~~~~ 90 (102)
T 2xs2_A 85 RKQNLS 90 (102)
T ss_dssp ECC---
T ss_pred cCcchh
Confidence 876543
No 147
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.52 E-value=8.1e-15 Score=144.55 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=73.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCC--CeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYG--PVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG--~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
..++|||+| |++++|+++|+++|++|| +|.+|+|++ +++||||||+|.+.++|++||+.+|++.|+|+.|+|.
T Consensus 67 ~~~~lfVgn-L~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGN-LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEES-CCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeC-CCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 457999999 999999999999999999 999999984 7899999999999999999999999999999999999
Q ss_pred ecccCcc
Q 008448 411 PYREKSK 417 (565)
Q Consensus 411 ~A~~K~k 417 (565)
+++++..
T Consensus 146 ~a~~~~~ 152 (229)
T 3q2s_C 146 PVNKQFL 152 (229)
T ss_dssp ECCHHHH
T ss_pred ECCCCcc
Confidence 9987643
No 148
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=120.74 Aligned_cols=78 Identities=29% Similarity=0.488 Sum_probs=69.2
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccCc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K~ 416 (565)
.+++|||+| |++++|+++|+++|++||+|.+|+|+.. +||||||+|.+.++|++|+.. .+.++|++|.|.++.++.
T Consensus 4 ~~~~l~V~n-Lp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGR-CTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEES-CCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeC-CCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 568999999 9999999999999999999999999864 799999999999999876443 467799999999998876
Q ss_pred ch
Q 008448 417 KL 418 (565)
Q Consensus 417 k~ 418 (565)
..
T Consensus 80 ~~ 81 (88)
T 1wf0_A 80 NS 81 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 149
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.5e-14 Score=119.82 Aligned_cols=78 Identities=23% Similarity=0.434 Sum_probs=68.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccCc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K~ 416 (565)
..++|||+| |++++|+++|+++|++||+|.+|.+.....+ ||||+|.+.++|++|++ +|++.|+|+.|.|.++.++.
T Consensus 7 ~~~~l~V~n-l~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSG-FPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEEC-CCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEEC-CCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 457999999 9999999999999999999999832222223 99999999999999999 99999999999999987765
Q ss_pred c
Q 008448 417 K 417 (565)
Q Consensus 417 k 417 (565)
.
T Consensus 84 ~ 84 (94)
T 2e5g_A 84 F 84 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 150
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.51 E-value=2.7e-15 Score=137.33 Aligned_cols=75 Identities=20% Similarity=0.365 Sum_probs=69.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceee---eeEEEEE
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVC---GARVLVK 410 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~---Gr~V~Vk 410 (565)
..++|||+| |+..+|+++|+++|++||.|.+|+|+. |+++|||||+|.+.++|.+|++.+|+..+. |++|.|+
T Consensus 94 ~~~~l~v~n-l~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGM-ISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcC-CCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 568999999 999999999999999999999999985 678999999999999999999999987776 4999999
Q ss_pred ec
Q 008448 411 PY 412 (565)
Q Consensus 411 ~A 412 (565)
+|
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 151
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1e-14 Score=131.37 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=71.1
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCe----eEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPV----DDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V----~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
...+|||+| |++++|+++|+++|++||+| .+|+|++ |++||||||+|.+.++|++|++. |++.|+||.|.|
T Consensus 22 ~~~~v~V~n-Lp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRG-LPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECS-CCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 357999999 99999999999999999986 6898884 88999999999999999999997 899999999999
Q ss_pred EecccCc
Q 008448 410 KPYREKS 416 (565)
Q Consensus 410 k~A~~K~ 416 (565)
..+.++.
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987653
No 152
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=1.7e-15 Score=132.78 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=75.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeE--------EEeec----CCCCcEEEEEECCHHHHHHHHHccCCceee
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD--------VRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVC 403 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~--------V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~ 403 (565)
+..++|||+| |++++|+++|+++|++||.|.+ |+|+. ++++|||||+|.+.++|++|++.+|+..|+
T Consensus 5 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQG-LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 3568999999 9999999999999999999999 88874 678999999999999999999999999999
Q ss_pred eeEEEEEecccCcch
Q 008448 404 GARVLVKPYREKSKL 418 (565)
Q Consensus 404 Gr~V~Vk~A~~K~k~ 418 (565)
|+.|.|.+++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999887654
No 153
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.49 E-value=5.5e-14 Score=127.96 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=74.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
+.++|||+| ||.++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..++|+.|.|.++
T Consensus 2 ~~~~l~v~n-lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNY-LPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEEC-CCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 468999999 999999999999999999999999984 668899999999999999999999999999999999999
Q ss_pred ccCcc
Q 008448 413 REKSK 417 (565)
Q Consensus 413 ~~K~k 417 (565)
.++..
T Consensus 81 ~~~~~ 85 (168)
T 1b7f_A 81 RPGGE 85 (168)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87654
No 154
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.49 E-value=5.7e-14 Score=115.95 Aligned_cols=71 Identities=24% Similarity=0.425 Sum_probs=67.1
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeee
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTY----G-------PVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~f----G-------~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr 405 (565)
..++|||+| |++++|+++|+++|++| | +|.+|+++. .||||||+|.+.++|++|+ .+|+..++|+
T Consensus 5 ~~~~l~V~n-Lp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGN-IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGEEEEES-CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 568999999 99999999999999999 8 999999986 6899999999999999999 9999999999
Q ss_pred EEEEEe
Q 008448 406 RVLVKP 411 (565)
Q Consensus 406 ~V~Vk~ 411 (565)
.|.|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 155
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.49 E-value=7e-14 Score=126.63 Aligned_cols=79 Identities=14% Similarity=0.275 Sum_probs=74.2
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
+++|||+| ||.++|+++|+++|++||+|.+|+|+. |+++|||||+|.+.++|++|++.+|+..++|+.|.|.++.
T Consensus 2 ~~~l~v~n-lp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNY-LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEES-CCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcC-CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 57999999 999999999999999999999999984 6788999999999999999999999999999999999998
Q ss_pred cCcc
Q 008448 414 EKSK 417 (565)
Q Consensus 414 ~K~k 417 (565)
++..
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 7654
No 156
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.49 E-value=1.2e-14 Score=133.51 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=72.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
...++|||+| |++++||++|+++|++|| |++|+|++ +++||||||+|.+.++|++|+ .+|++.|+||.|.|..+
T Consensus 44 ~~~~~lfV~n-Lp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRG-LPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCS-CCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3557999999 999999999999999999 77999985 789999999999999999999 77999999999999999
Q ss_pred ccCcch
Q 008448 413 REKSKL 418 (565)
Q Consensus 413 ~~K~k~ 418 (565)
.++...
T Consensus 121 ~~~~~~ 126 (139)
T 2hgn_A 121 STTGAS 126 (139)
T ss_dssp CCSCC-
T ss_pred CCCCCC
Confidence 876543
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.48 E-value=5.9e-14 Score=135.19 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=74.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
+.++||||| |++++||++|+++|++||+|.+|+|++ ++++|||||+|.+.++|++|++.+|+..+.|+.|+|.++
T Consensus 14 p~~tlfVgn-Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGD-LHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEeC-CCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 558999999 999999999999999999999999984 788999999999999999999999999999999999998
Q ss_pred ccCcch
Q 008448 413 REKSKL 418 (565)
Q Consensus 413 ~~K~k~ 418 (565)
......
T Consensus 93 ~~~~~~ 98 (213)
T 4f02_A 93 QRDPSL 98 (213)
T ss_dssp CCCTHH
T ss_pred cccccc
Confidence 766543
No 158
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=5.4e-14 Score=125.51 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=71.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
...++|||+| + ++|+++|+++|++||+|.+|+|+ +++|||||+|.+.++|++|++.+|+..|+|+.|.|.+++++
T Consensus 37 ~~~~~lfVgn-l--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYG-E--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEEC-S--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcC-C--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 4568999999 5 69999999999999999999997 48999999999999999999999999999999999999887
Q ss_pred cch
Q 008448 416 SKL 418 (565)
Q Consensus 416 ~k~ 418 (565)
...
T Consensus 112 ~~~ 114 (121)
T 2bz2_A 112 PML 114 (121)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 159
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=1e-13 Score=126.35 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=72.0
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcE-EEEEECCHHHHHHHHHccCCceeee--eEEEEEecc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMF-GFVTFASADTVKMILAKGNPHFVCG--ARVLVKPYR 413 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGf-aFVtF~~~e~A~~Al~~lN~~~i~G--r~V~Vk~A~ 413 (565)
.--+|||+| |++.+|+++|+++|++||+|.+|+|+.. .+|| |||+|.+.++|++|++.||+..|.| +.|+|.+++
T Consensus 27 ~VL~I~V~N-L~~~vte~~L~~lFs~yG~V~~V~i~~~-~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 27 PVLRIIVEN-LFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp SEEEEEEES-CCSCCCHHHHHHHHTTSSCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred ceEEEEECC-CCCCCCHHHHHHHHhCcCCEEEEEEEcC-CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 446899999 9999999999999999999999998863 5788 9999999999999999999999998 999999998
Q ss_pred cCc
Q 008448 414 EKS 416 (565)
Q Consensus 414 ~K~ 416 (565)
++.
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 874
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.48 E-value=5.2e-14 Score=128.25 Aligned_cols=77 Identities=21% Similarity=0.350 Sum_probs=72.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..++|||+| |+..+|+++|+++|++||.|.+|+|+. |+++|||||+|.+.++|.+|++ +|+..++|+.|.|.+|
T Consensus 86 ~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGG-IGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEE-ECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEECC-CCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 357999999 999999999999999999999999984 7889999999999999999998 7899999999999999
Q ss_pred ccC
Q 008448 413 REK 415 (565)
Q Consensus 413 ~~K 415 (565)
.+|
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 887
No 161
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=7.8e-14 Score=132.41 Aligned_cols=83 Identities=8% Similarity=0.099 Sum_probs=76.7
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
.....++|||+| |++.+|+++|+++|++||+|.+|.|++ ++++|||||+|.+.++|++|++.+|+..|+|+.|.|.
T Consensus 84 ~~~~~~~l~V~n-Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSN-LDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEEC-CCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999 999999999999999999999999996 7889999999999999999999999999999999999
Q ss_pred ecccCcc
Q 008448 411 PYREKSK 417 (565)
Q Consensus 411 ~A~~K~k 417 (565)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9987543
No 162
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.47 E-value=9.9e-14 Score=126.56 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=66.2
Q ss_pred cceEEEeCCC----CCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECC----HHH----HHHHHH--ccCC
Q 008448 338 SRQIYLTFPA----ESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFAS----ADT----VKMILA--KGNP 399 (565)
Q Consensus 338 ~~kIfVgn~L----~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~----~e~----A~~Al~--~lN~ 399 (565)
+.+||||| | ++.++|++|++||++||+|.+|.+++ |+++|||||+|.+ ++. |.+|+. .+|+
T Consensus 2 p~kI~Vgn-L~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 2 SCEIVVYP-AQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CCEEEEEE-SSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred CcEEEEeC-CCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 36899999 9 99999999999999999999999994 8999999999996 433 889988 7899
Q ss_pred ceeeeeEEEEEec
Q 008448 400 HFVCGARVLVKPY 412 (565)
Q Consensus 400 ~~i~Gr~V~Vk~A 412 (565)
..|+||+|+|+.-
T Consensus 81 ~~I~Gr~irV~ln 93 (136)
T 2j8a_A 81 CFIMGFKFEVILN 93 (136)
T ss_dssp EEETTEEEEEEEC
T ss_pred CeecCcEEEEEEC
Confidence 9999999999864
No 163
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.47 E-value=3.7e-14 Score=128.38 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=69.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCee--EEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVD--DVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~--~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....+|||+| |++++||++|+++|++| .|+ +|+|++ |++||||||+|.+.++|++|++. ++..|+||.|.|.
T Consensus 40 ~~~~~lfVgn-Lp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRG-LPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEEC-CCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 3568999999 99999999999999999 677 999985 78999999999999999999987 6799999999999
Q ss_pred ecccC
Q 008448 411 PYREK 415 (565)
Q Consensus 411 ~A~~K 415 (565)
++.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 164
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.47 E-value=1e-13 Score=134.22 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=73.4
Q ss_pred CCcceEEEeCCCC-CCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 336 TGSRQIYLTFPAE-STFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 336 ~~~~kIfVgn~L~-~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
+.+.+|||+| |+ +.+|+++|+++|++||.|.+|+|+.. +||||||+|.+.++|++|++.||+..+.|+.|.|.+++.
T Consensus 2 ~~~~~l~V~n-L~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYG-LDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEEC-CCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeC-CCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 4578999999 99 89999999999999999999999974 589999999999999999999999999999999999875
Q ss_pred Cc
Q 008448 415 KS 416 (565)
Q Consensus 415 K~ 416 (565)
+.
T Consensus 80 ~~ 81 (205)
T 3tyt_A 80 PA 81 (205)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 165
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.47 E-value=6.4e-14 Score=126.74 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=72.6
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
++|||+| ||.++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..+.|+.|.|.++.++
T Consensus 1 R~l~V~n-lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGN-LDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEE-EETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECC-CCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999 999999999999999999999999985 678999999999999999999999999999999999999776
Q ss_pred cc
Q 008448 416 SK 417 (565)
Q Consensus 416 ~k 417 (565)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 166
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=121.35 Aligned_cols=76 Identities=20% Similarity=0.356 Sum_probs=66.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec-------CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC-------QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~-------gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~ 408 (565)
...++|||+| |++++|+++|+++|++||+|. +.++. |++||||||+|.+.++|++|++.+ +.++|+.+.
T Consensus 6 ~~~~~lfVgn-Lp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGG-LPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLYL 81 (114)
T ss_dssp SCCCCEEEEC-CCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEEE
T ss_pred CCCCEEEEcC-CCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEEE
Confidence 3568999999 999999999999999999999 77774 588999999999999999999997 458888888
Q ss_pred EEecccC
Q 008448 409 VKPYREK 415 (565)
Q Consensus 409 Vk~A~~K 415 (565)
|..+.+.
T Consensus 82 ~~~~~~~ 88 (114)
T 2dnl_A 82 CVSSPTI 88 (114)
T ss_dssp EECCSSS
T ss_pred eccCCCc
Confidence 8765543
No 167
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.46 E-value=4.2e-14 Score=124.50 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=67.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeE-----EEEEe
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGAR-----VLVKP 411 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~-----V~Vk~ 411 (565)
...+|||+| |++++|+++|+++|++||+|.+|.|+.. |||||+|.+.++|++|++.||+..|+|+. |+|..
T Consensus 15 ~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 15 SENRVVVSG-LPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp --CCEEEEE-CCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCcEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 457999999 9999999999999999999999999874 99999999999999999999999999998 77777
Q ss_pred cccCcc
Q 008448 412 YREKSK 417 (565)
Q Consensus 412 A~~K~k 417 (565)
+.++..
T Consensus 91 ~~~~~~ 96 (115)
T 3beg_B 91 DGPRSP 96 (115)
T ss_dssp CC----
T ss_pred CCCCCC
Confidence 766543
No 168
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=3.7e-13 Score=121.62 Aligned_cols=76 Identities=16% Similarity=0.051 Sum_probs=69.8
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcE-EEEEECCHHHHHHHHHccCCceeee--eEEEEEecccC
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMF-GFVTFASADTVKMILAKGNPHFVCG--ARVLVKPYREK 415 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGf-aFVtF~~~e~A~~Al~~lN~~~i~G--r~V~Vk~A~~K 415 (565)
-.|||+| |++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|++|++.||+..|.| +.|+|.+|+++
T Consensus 26 l~l~V~N-L~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 26 LLLSIQN-PLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEEES-CCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEEcC-cCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 4578999 9999999999999999999999999863 597 9999999999999999999999988 69999999987
Q ss_pred cc
Q 008448 416 SK 417 (565)
Q Consensus 416 ~k 417 (565)
..
T Consensus 103 ~l 104 (124)
T 2e5i_A 103 RL 104 (124)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 169
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.44 E-value=1.9e-13 Score=127.75 Aligned_cols=80 Identities=24% Similarity=0.393 Sum_probs=72.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |++++|+++|+++|++||+|.+|+|+. |+++|||||+|.+.++|++|++. +++.++|+.|.|.+
T Consensus 11 ~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 11 EQLRKLFIGG-LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp GGGGEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 4568999999 999999999999999999999999984 67899999999999999999988 79999999999999
Q ss_pred cccCcc
Q 008448 412 YREKSK 417 (565)
Q Consensus 412 A~~K~k 417 (565)
+.++..
T Consensus 89 ~~~~~~ 94 (196)
T 1l3k_A 89 AVSRED 94 (196)
T ss_dssp CCC---
T ss_pred ccCccc
Confidence 987643
No 170
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.44 E-value=2.1e-13 Score=146.53 Aligned_cols=84 Identities=17% Similarity=0.330 Sum_probs=77.2
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
....++|||+| |++.+|+++|+++|++||+|+.|.|++ ++++|||||+|.+.++|.+||..||++.|+|+.|.|.
T Consensus 99 ~~~~~~lfV~n-L~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVAR-VNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34568999999 999999999999999999999999984 7789999999999999999999999999999999999
Q ss_pred ecccCcchh
Q 008448 411 PYREKSKLV 419 (565)
Q Consensus 411 ~A~~K~k~~ 419 (565)
++.++....
T Consensus 178 ~a~~~~~~~ 186 (437)
T 3pgw_S 178 VERGRTVKG 186 (437)
T ss_pred EeCCCCCCC
Confidence 998765543
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=1.8e-13 Score=129.75 Aligned_cols=80 Identities=15% Similarity=0.333 Sum_probs=74.9
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..++|||+| |+.++|+++|+++|++||.|.+|+|+. |+++|||||+|.+.++|.+|++.+|+..|+|+.|.|.++
T Consensus 124 ~~~~l~v~n-lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 124 AFNRIYVAS-VHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TSCEEEEEC-CCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCcEEEEeC-CCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 457999999 999999999999999999999999984 678999999999999999999999999999999999999
Q ss_pred ccCcc
Q 008448 413 REKSK 417 (565)
Q Consensus 413 ~~K~k 417 (565)
.++..
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 88743
No 172
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.43 E-value=1.8e-13 Score=127.98 Aligned_cols=81 Identities=12% Similarity=0.283 Sum_probs=75.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |++.+|+++|+++|++||.|.+|+|+. ++++|||||+|.+.++|++|++.+|+..|+|+.|.|.+
T Consensus 112 ~~~~~l~v~n-l~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGG-LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEEC-CCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4568999999 999999999999999999999999984 66799999999999999999999999999999999999
Q ss_pred cccCcc
Q 008448 412 YREKSK 417 (565)
Q Consensus 412 A~~K~k 417 (565)
+.++.+
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 998754
No 173
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.43 E-value=3.6e-13 Score=133.88 Aligned_cols=82 Identities=15% Similarity=0.243 Sum_probs=75.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHH----HHhhcCCCeeEEEeec-CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVS----NYFNTYGPVDDVRIPC-QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr----~~Fs~fG~V~~V~I~~-gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
....++|||+| |++++|+++|+ ++|++||.|.+|+|+. +++||||||+|.+.++|++|++.+|+..|.|+.|.|
T Consensus 6 ~~~~~~l~V~n-lp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINN-LNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 34678999999 99999999977 8999999999999984 889999999999999999999999999999999999
Q ss_pred EecccCcc
Q 008448 410 KPYREKSK 417 (565)
Q Consensus 410 k~A~~K~k 417 (565)
.+++.+..
T Consensus 85 ~~a~~~~~ 92 (282)
T 3pgw_A 85 QYAKTDSD 92 (282)
T ss_pred EEeccCcc
Confidence 99976654
No 174
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.43 E-value=2.4e-13 Score=124.44 Aligned_cols=77 Identities=13% Similarity=0.319 Sum_probs=72.2
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |+..+|+++|+++|++||+|.+|+|+. |+++|||||+|.+.++|++|++.+|+..++|++|.|.+
T Consensus 92 ~~~~~l~v~n-lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIGG-LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEEC-CCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEEc-CCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3468999999 999999999999999999999999984 67799999999999999999999999999999999998
Q ss_pred cc
Q 008448 412 YR 413 (565)
Q Consensus 412 A~ 413 (565)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 175
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.2e-13 Score=116.30 Aligned_cols=82 Identities=7% Similarity=0.182 Sum_probs=72.0
Q ss_pred CCCcceEEEeCCCCCCC-----------CHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceee
Q 008448 335 VTGSRQIYLTFPAESTF-----------TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC 403 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~-----------TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~ 403 (565)
...+++|+|.| |-... ++++|+++|++||+|.+|.|+...++|||||+|.+.++|++|+..+|+..|+
T Consensus 12 ~~~s~~l~l~N-l~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 12 MRHERVVIIKN-MFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCSCCEEEEES-SCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCceEEEEEc-CCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35678999999 63322 2689999999999999998876668999999999999999999999999999
Q ss_pred eeEEEEEecccCcc
Q 008448 404 GARVLVKPYREKSK 417 (565)
Q Consensus 404 Gr~V~Vk~A~~K~k 417 (565)
||.|.|.++.++.+
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999988754
No 176
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=117.47 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=68.8
Q ss_pred CCcce-EEEeCCCCCCCCHHH----HHHHhhcC-CCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEE
Q 008448 336 TGSRQ-IYLTFPAESTFTEDD----VSNYFNTY-GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (565)
Q Consensus 336 ~~~~k-IfVgn~L~~~~TEed----Lr~~Fs~f-G~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~V 409 (565)
+++.| |||+| |++++++++ |+++|++| |+|.+| + .|||||+|.+.++|++|++.||+..+.||.|+|
T Consensus 6 ~p~~T~lYV~N-L~~~~~~~~lk~~L~~lF~~yGG~Vl~V---t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYN-LPANKDGKSVSNRLRRLSDNCGGKVLSI---T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEES-CCTTSCHHHHHHHHHHHHHTTTCCEEEC---C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeC-CCCcCCHHHHHHHHHHHHHHcCCeeEEE---e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34555 99999 999999998 55899999 599999 3 299999999999999999999999999999999
Q ss_pred EecccCcchh
Q 008448 410 KPYREKSKLV 419 (565)
Q Consensus 410 k~A~~K~k~~ 419 (565)
..|+.+.+..
T Consensus 79 ~~A~~~sd~~ 88 (96)
T 2diu_A 79 SFTPKNRELC 88 (96)
T ss_dssp ESSCCSCCCC
T ss_pred EecCCCccee
Confidence 9999887654
No 177
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.42 E-value=2.6e-13 Score=134.74 Aligned_cols=79 Identities=18% Similarity=0.325 Sum_probs=71.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccC-Cceee---eeEEEE
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGN-PHFVC---GARVLV 409 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN-~~~i~---Gr~V~V 409 (565)
...+|||+| |+..+|+++|+++|++||.|.+|+|+. |+++|||||+|.+.++|.+|+..+| +..+. |+.|.|
T Consensus 95 ~~~~l~v~n-l~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKN-LSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccC-CCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 457999999 999999999999999999999999984 7889999999999999999999994 55555 999999
Q ss_pred EecccCc
Q 008448 410 KPYREKS 416 (565)
Q Consensus 410 k~A~~K~ 416 (565)
.++.++.
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9998654
No 178
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.42 E-value=3.5e-13 Score=129.50 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=70.4
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
.++|||+| |++++|+++|+++|++||+|.+|+|++ +++||||||+|.+.++|++|++.+ ++.++|+.|.|.++++
T Consensus 109 ~~~l~V~n-Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKG-FPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEEC-CCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecC-CCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 48999999 999999999999999999999999995 778999999999999999999987 5699999999998765
Q ss_pred C
Q 008448 415 K 415 (565)
Q Consensus 415 K 415 (565)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 179
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.42 E-value=3.9e-13 Score=127.43 Aligned_cols=81 Identities=16% Similarity=0.360 Sum_probs=73.3
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
.++|||+| |+.++|+++|+++|++||+|.+|+|+. ++++|||||+|.+.++|++|++.+|+..|+|+.|.|.++.
T Consensus 28 ~~~l~V~n-Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGS-IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEEC-CCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CCEEEEEC-CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 47999999 999999999999999999999999984 6789999999999999999999999999999999999988
Q ss_pred cCcchh
Q 008448 414 EKSKLV 419 (565)
Q Consensus 414 ~K~k~~ 419 (565)
.+....
T Consensus 107 ~~~~~~ 112 (216)
T 2qfj_A 107 NIGQAQ 112 (216)
T ss_dssp CCGGGH
T ss_pred Cccccc
Confidence 765443
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.40 E-value=3.4e-13 Score=131.28 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=75.1
Q ss_pred CCCCCcceEEEeCCCCC-CCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 333 PIVTGSRQIYLTFPAES-TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 333 ~~~~~~~kIfVgn~L~~-~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...+.+++|||+| |++ ++|+++|+++|++||+|.+|+|+..+ +|||||+|.+.++|++|++.+|+..|+|+.|.|.+
T Consensus 29 ~~~~~~~~l~V~n-Lp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 29 LAGAGNSVLLVSN-LNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp GGCCCCSEEEEES-CCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCCCEEEEeC-CCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3445779999999 999 99999999999999999999999854 89999999999999999999999999999999999
Q ss_pred cccC
Q 008448 412 YREK 415 (565)
Q Consensus 412 A~~K 415 (565)
+.++
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9865
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.39 E-value=7.5e-13 Score=115.70 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=69.4
Q ss_pred CCcceEEEeCCCCC----CCCHHHHHHHhhcCCCeeEEEeec-----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeE
Q 008448 336 TGSRQIYLTFPAES----TFTEDDVSNYFNTYGPVDDVRIPC-----QQKRMFGFVTFASADTVKMILAKGNPHFVCGAR 406 (565)
Q Consensus 336 ~~~~kIfVgn~L~~----~~TEedLr~~Fs~fG~V~~V~I~~-----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~ 406 (565)
..+++|+|.|+... +-++++|++.|++||+|.+|+|+. ++++|||||+|.+.++|.+|++.||+..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 46789999994321 347899999999999999999985 468999999999999999999999999999999
Q ss_pred EEEEeccc
Q 008448 407 VLVKPYRE 414 (565)
Q Consensus 407 V~Vk~A~~ 414 (565)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999975
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.39 E-value=4.5e-13 Score=122.00 Aligned_cols=77 Identities=26% Similarity=0.454 Sum_probs=71.1
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
.+++|||+| |++++|+++|+++|++||+|.+|+|+. |+++|||||+|.+.++|++|++. .+.++|+.|.|.++
T Consensus 2 ~~~~l~v~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGG-LNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECS-CCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 357999999 999999999999999999999999984 78899999999999999999996 58999999999998
Q ss_pred ccCc
Q 008448 413 REKS 416 (565)
Q Consensus 413 ~~K~ 416 (565)
.++.
T Consensus 79 ~~~~ 82 (167)
T 2cjk_A 79 IPRD 82 (167)
T ss_dssp CCHH
T ss_pred cchh
Confidence 7654
No 183
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.38 E-value=7.1e-13 Score=121.10 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=71.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----C--CCCcEEEEEECCHHHHHHHHHccCCceee---eeEE
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----Q--QKRMFGFVTFASADTVKMILAKGNPHFVC---GARV 407 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----g--k~RGfaFVtF~~~e~A~~Al~~lN~~~i~---Gr~V 407 (565)
..++|||+| |++++|+++|+++|++||+|.+|+|+. + +++|||||+|.+.++|++|++.+|+..+. ++.+
T Consensus 2 ~~~~l~V~n-Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQ-VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEES-CCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 468999999 999999999999999999999999995 2 78999999999999999999999987776 6888
Q ss_pred EEEecccCcc
Q 008448 408 LVKPYREKSK 417 (565)
Q Consensus 408 ~Vk~A~~K~k 417 (565)
.|.++.++..
T Consensus 81 ~~~~~~~~~~ 90 (175)
T 3nmr_A 81 QMKPADSEKN 90 (175)
T ss_dssp EEEECGGGCC
T ss_pred EEcccccccc
Confidence 8888776543
No 184
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.36 E-value=1.3e-12 Score=118.75 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=70.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeee--eEEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCG--ARVLV 409 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~G--r~V~V 409 (565)
...++|||+| |+..+|+++|+++|++||.|.+|+|+. ++++|||||+|.+.++|.+|++.+|+..++| ++|.|
T Consensus 87 ~~~~~l~v~n-l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 87 IKDTNLYVTN-LPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTCEEEEES-CCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCCEEEeC-CCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 4568999999 999999999999999999999999984 6678999999999999999999999999988 99999
Q ss_pred Eec
Q 008448 410 KPY 412 (565)
Q Consensus 410 k~A 412 (565)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.36 E-value=1.8e-12 Score=128.77 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=72.1
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceee-eeEEEEEecc
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC-GARVLVKPYR 413 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~-Gr~V~Vk~A~ 413 (565)
.+..++|||+| |+..+|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|.+|++.+|+..|+ |+.|+|.+++
T Consensus 204 ~~~~~~l~v~n-l~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTN-LPEETNELMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeC-CCCcCCHHHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 34578999999 99999999999999999999999999754 699999999999999999999999999 9999999986
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.35 E-value=6.8e-13 Score=125.00 Aligned_cols=78 Identities=17% Similarity=0.314 Sum_probs=72.9
Q ss_pred CcceEEEeCCCCC-CCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 337 GSRQIYLTFPAES-TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 337 ~~~kIfVgn~L~~-~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
.+++|||+| |+. ++|+++|+++|++||.|.+|+|+..+ +|||||+|.+.++|++|++.+|+..++|+.|.|.++.++
T Consensus 2 ~~~~l~v~n-lp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSN-LNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEEC-CCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeC-CCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 357999999 999 99999999999999999999999854 899999999999999999999999999999999999865
Q ss_pred c
Q 008448 416 S 416 (565)
Q Consensus 416 ~ 416 (565)
.
T Consensus 80 ~ 80 (198)
T 1qm9_A 80 N 80 (198)
T ss_dssp S
T ss_pred C
Confidence 4
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.35 E-value=1.6e-12 Score=129.92 Aligned_cols=80 Identities=18% Similarity=0.348 Sum_probs=74.3
Q ss_pred CCCcceEEEeCCCCCC-CCHHHHHHHhhcCCCeeEEEeec-----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEE
Q 008448 335 VTGSRQIYLTFPAEST-FTEDDVSNYFNTYGPVDDVRIPC-----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~-~TEedLr~~Fs~fG~V~~V~I~~-----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~ 408 (565)
....++|||+| |++. +|+++|+++|++||.|..|+|+. |+++|||||+|.+.++|.+|+ .+|+..|+|+.|.
T Consensus 207 ~~~~~~l~v~n-lp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 207 TLEGREIMIRN-LSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp CCTTTEEEEEE-ECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred CCCCceEEEEC-CCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 34668999999 9999 99999999999999999999985 778999999999999999999 9999999999999
Q ss_pred EEecccCc
Q 008448 409 VKPYREKS 416 (565)
Q Consensus 409 Vk~A~~K~ 416 (565)
|.++.+|.
T Consensus 285 V~~a~~k~ 292 (292)
T 2ghp_A 285 VSLADKKP 292 (292)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99999873
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.35 E-value=5.5e-13 Score=122.81 Aligned_cols=82 Identities=15% Similarity=0.211 Sum_probs=71.9
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEee---cCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP---CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 334 ~~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~---~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
.....++|||+| |++++|+++|+++|++||.|..+.|. +++++|||||+|.+.++|++|++ +|+..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~n-Lp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGN-LNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEEC-CCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeC-CCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 344678999999 99999999999999999987763333 38899999999999999999995 89999999999999
Q ss_pred ecccCcc
Q 008448 411 PYREKSK 417 (565)
Q Consensus 411 ~A~~K~k 417 (565)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9987654
No 189
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.35 E-value=1.3e-12 Score=118.27 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=69.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeE--EEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGAR--VLV 409 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~--V~V 409 (565)
...++|||+| |+..+|+++|+++|++||.|.+|+|+. |+++|||||+|.+.++|.+|++.+|+..++|+. |.|
T Consensus 86 ~~~~~l~v~n-l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVSG-LPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCcEEECC-CCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 3568999999 999999999999999999999999984 667999999999999999999999999999975 888
Q ss_pred Eec
Q 008448 410 KPY 412 (565)
Q Consensus 410 k~A 412 (565)
.+|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.34 E-value=1.8e-12 Score=129.01 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=77.9
Q ss_pred CCcceEEEeCCCCCCC-CHHHHHHHhhcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTF-TEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~-TEedLr~~Fs~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
...++|||+| |++.+ |+++|+++|++||.|.+|+|+. |+++|||||+|.+.++|.+|+..+|+..|+|+.|.|.+
T Consensus 182 ~~~~~l~v~n-lp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDR-LPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEEC-CCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEec-CCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4568999999 99995 9999999999999999999985 77899999999999999999999999999999999999
Q ss_pred cccCcchhhh
Q 008448 412 YREKSKLVDR 421 (565)
Q Consensus 412 A~~K~k~~~k 421 (565)
+.++......
T Consensus 261 a~~~~~~~~~ 270 (284)
T 3smz_A 261 CAPGPPGRSM 270 (284)
T ss_dssp CCSSSCHHHH
T ss_pred ecCCCcccch
Confidence 9988765443
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.31 E-value=4.4e-12 Score=125.89 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=72.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecccC
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~K 415 (565)
...++|||+| |++++|+++|+++|++||.|.+|+|.. ++|||||+|.+.++|++|+..+|+..|+|+.|.|.++.+.
T Consensus 20 ~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGN-LPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEES-CCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEEC-CCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 4568999999 999999999999999999999999975 7899999999999999999999999999999999998764
Q ss_pred c
Q 008448 416 S 416 (565)
Q Consensus 416 ~ 416 (565)
.
T Consensus 97 ~ 97 (261)
T 3sde_A 97 A 97 (261)
T ss_dssp S
T ss_pred C
Confidence 3
No 192
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.30 E-value=4.4e-12 Score=118.55 Aligned_cols=77 Identities=23% Similarity=0.394 Sum_probs=68.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeee
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTY----G-------PVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~f----G-------~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr 405 (565)
.+++|||+| |++++|+++|+++|++| | .|.++.+ ++++|||||+|.+.++|++|+ .+|++.|+|+
T Consensus 3 ~~~~l~V~n-Lp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~ 78 (198)
T 2yh0_A 3 MARRLYVGN-IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (198)
T ss_dssp -CCEEEEES-CCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--ETTTTEEEEEESCSHHHHHHG-GGTTEEETTE
T ss_pred ceeEEEEcC-CCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe--cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCc
Confidence 468999999 99999999999999999 5 6666666 458999999999999999999 8999999999
Q ss_pred EEEEEecccCcc
Q 008448 406 RVLVKPYREKSK 417 (565)
Q Consensus 406 ~V~Vk~A~~K~k 417 (565)
.|.|.++.++..
T Consensus 79 ~i~v~~~~~~~~ 90 (198)
T 2yh0_A 79 SLKIRRPHDYQP 90 (198)
T ss_dssp EEEEECCCCCCC
T ss_pred eEEEeCCCCCCC
Confidence 999999877643
No 193
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.29 E-value=5.5e-12 Score=115.32 Aligned_cols=76 Identities=22% Similarity=0.389 Sum_probs=69.0
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeee
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTY----G-------PVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~f----G-------~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr 405 (565)
..++|||+| ||.++|+++|+++|++| | .|.++++.. ++|||||+|.+.++|++|+ .+|++.++|+
T Consensus 3 ~~~~l~V~n-Lp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGN-IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEES-CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred cccEEEEcC-CCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 358999999 99999999999999999 7 788887754 7999999999999999999 8999999999
Q ss_pred EEEEEecccCc
Q 008448 406 RVLVKPYREKS 416 (565)
Q Consensus 406 ~V~Vk~A~~K~ 416 (565)
.|.|.++.+..
T Consensus 79 ~i~v~~~~~~~ 89 (172)
T 2g4b_A 79 SLKIRRPHDYQ 89 (172)
T ss_dssp ECEEECCSSCC
T ss_pred eeeecCCcccC
Confidence 99999876553
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.28 E-value=5.5e-12 Score=118.75 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=73.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCC-CeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceee-eeEEEEEec
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYG-PVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC-GARVLVKPY 412 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG-~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~-Gr~V~Vk~A 412 (565)
.+..++|||+| |+..+|+++|+++|++|| .|.+|+|+.. .+|||||+|.+.++|.+|+..+|+..++ |+.|.|.++
T Consensus 117 ~~~~~~l~v~n-l~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 117 FPPSATLHLSN-IPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCCCEEEECC-CCTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CCCccEEEEeC-CCCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 34679999999 999999999999999999 9999999652 4899999999999999999999999999 999999998
Q ss_pred ccC
Q 008448 413 REK 415 (565)
Q Consensus 413 ~~K 415 (565)
+++
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 195
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.9e-11 Score=106.24 Aligned_cols=78 Identities=13% Similarity=0.267 Sum_probs=65.9
Q ss_pred CcceEEEeCCCC------CCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 337 GSRQIYLTFPAE------STFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 337 ~~~kIfVgn~L~------~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
..++|-|..... ..+|+++|+++|++||+|.+|+|+ +++||||||+|.+.++|++|++.+ ..+.|+.|.|.
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l~V~ 85 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNE--VGLVDNPLKIS 85 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTC--CBCSSSBCEEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhc--CCCCCCeEEEE
Confidence 455677766222 458999999999999999999998 578999999999999999999985 44679999999
Q ss_pred ecccCcc
Q 008448 411 PYREKSK 417 (565)
Q Consensus 411 ~A~~K~k 417 (565)
|++++..
T Consensus 86 ~a~~~~~ 92 (100)
T 2d9o_A 86 WLEGQPQ 92 (100)
T ss_dssp CSSCCCC
T ss_pred EccCCCC
Confidence 9987754
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.27 E-value=8.2e-12 Score=121.48 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=72.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcCC-CeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceee-eeEEEEEec
Q 008448 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYG-PVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC-GARVLVKPY 412 (565)
Q Consensus 335 ~~~~~kIfVgn~L~~~~TEedLr~~Fs~fG-~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~-Gr~V~Vk~A 412 (565)
.+..++|||+| |+..+|+++|+++|++|| .|.+|+|+. +.+|||||+|.+.++|.+|++.+|+..++ |+.|.|.++
T Consensus 148 ~~~~~~l~V~n-lp~~~t~~~l~~~f~~~G~~i~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 148 FPPSATLHLSN-IPPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CCSCSEEEEEC-CCTTCCHHHHHHHHHTTSCCEEEEEECS-SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCCCEEEEeC-CCccCCHHHHHHHHHHcCCCeeEEEEEE-CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 34578999999 999999999999999999 999999964 25899999999999999999999999999 999999999
Q ss_pred ccC
Q 008448 413 REK 415 (565)
Q Consensus 413 ~~K 415 (565)
+++
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 874
No 197
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.26 E-value=9.6e-12 Score=123.74 Aligned_cols=81 Identities=9% Similarity=0.125 Sum_probs=75.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~----gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
+..++|||+| |++.+|+++|+++|++||.|..|+|+. |+++|||||+|.+.++|.+|++.+|+..++|+.|.|.+
T Consensus 93 ~~~~~l~v~n-lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 93 PTDALLCVAN-LPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCSCEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEcC-CCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3567999999 999999999999999999999999983 77899999999999999999999999999999999999
Q ss_pred cccCcc
Q 008448 412 YREKSK 417 (565)
Q Consensus 412 A~~K~k 417 (565)
+.++..
T Consensus 172 a~~~~~ 177 (284)
T 3smz_A 172 TDAGQL 177 (284)
T ss_dssp CCGGGC
T ss_pred CCCCCC
Confidence 987653
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.25 E-value=2.1e-12 Score=112.45 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=61.1
Q ss_pred EeCCCCCCCCHHHHHHHh------------hcCCCeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEE
Q 008448 343 LTFPAESTFTEDDVSNYF------------NTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407 (565)
Q Consensus 343 Vgn~L~~~~TEedLr~~F------------s~fG~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V 407 (565)
+++ |++.+++++|+++| ++||+|.+|+|+. +++||||||+|.+.++|++|+..+|+..++||.|
T Consensus 20 ~~~-l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADG-LRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCC-cccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 455 77777887777666 9999999999996 5689999999999999999999999999999999
Q ss_pred EEEec
Q 008448 408 LVKPY 412 (565)
Q Consensus 408 ~Vk~A 412 (565)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 199
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.24 E-value=7e-12 Score=121.25 Aligned_cols=76 Identities=14% Similarity=0.089 Sum_probs=68.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcCCCe--eEEEeec--CCCCcEEEEEECCHHHHHHHHHccCCceeeee----EE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPV--DDVRIPC--QQKRMFGFVTFASADTVKMILAKGNPHFVCGA----RV 407 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V--~~V~I~~--gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr----~V 407 (565)
+..++|||+| |++++|+++|+++|++||.| .+|+|+. ++++|||||+|.+.++|.+|+..+|+..|.|+ ++
T Consensus 121 ~p~~~l~v~N-Lp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFN-APLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEE-ECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeC-CCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 4568999999 99999999999999999999 8999986 45679999999999999999999999999987 46
Q ss_pred EEEec
Q 008448 408 LVKPY 412 (565)
Q Consensus 408 ~Vk~A 412 (565)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66654
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.24 E-value=1.1e-11 Score=123.65 Aligned_cols=81 Identities=15% Similarity=0.278 Sum_probs=71.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCC-CeeEEEeec---CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYG-PVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG-~V~~V~I~~---gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
..++|||+| |++.+|+++|+++|++|| +|.+|+|+. ++++|||||+|.+.++|.+|+..+|++.|+|+.|.|.++
T Consensus 116 ~~~~l~v~n-lp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTN-FPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEEC-CCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEC-CCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999 999999999999999999 999999986 678999999999999999999999999999999999999
Q ss_pred ccCcch
Q 008448 413 REKSKL 418 (565)
Q Consensus 413 ~~K~k~ 418 (565)
.++...
T Consensus 195 ~~~~~~ 200 (292)
T 2ghp_A 195 NPLEKS 200 (292)
T ss_dssp CCC---
T ss_pred CCCccc
Confidence 876543
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.22 E-value=1.9e-11 Score=106.61 Aligned_cols=80 Identities=18% Similarity=0.129 Sum_probs=68.9
Q ss_pred CCcceEEEeCCCCC-CC--------CHHHHHHHhhcCCCeeEEEeec------CCCCcEEEEEECCHHHHHHHHHccCCc
Q 008448 336 TGSRQIYLTFPAES-TF--------TEDDVSNYFNTYGPVDDVRIPC------QQKRMFGFVTFASADTVKMILAKGNPH 400 (565)
Q Consensus 336 ~~~~kIfVgn~L~~-~~--------TEedLr~~Fs~fG~V~~V~I~~------gk~RGfaFVtF~~~e~A~~Al~~lN~~ 400 (565)
.+++.|.|.|++.. ++ .+++|++.|++||+|.+|+|++ ++++|||||+|.+.++|++|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999995442 22 3479999999999999999995 257999999999999999999999999
Q ss_pred eeeeeEEEEEecccC
Q 008448 401 FVCGARVLVKPYREK 415 (565)
Q Consensus 401 ~i~Gr~V~Vk~A~~K 415 (565)
.++||.|.|..+.+.
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998654
No 202
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.17 E-value=5e-11 Score=105.94 Aligned_cols=79 Identities=13% Similarity=0.048 Sum_probs=68.8
Q ss_pred CcceEEEeCCCCCCC---------CHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEE
Q 008448 337 GSRQIYLTFPAESTF---------TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~---------TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V 407 (565)
.++.|.+.|++...- .+++|++.|++||+|.+|.|+....+|||||+|.+.++|++|++.||+..++||.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 567788888655432 24689999999999999999986679999999999999999999999999999999
Q ss_pred EEEecccC
Q 008448 408 LVKPYREK 415 (565)
Q Consensus 408 ~Vk~A~~K 415 (565)
.|.++.+.
T Consensus 86 ~v~~~~~~ 93 (114)
T 3s6e_A 86 TAAYVPLP 93 (114)
T ss_dssp EEEEECHH
T ss_pred EEEEEcHH
Confidence 99998654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.16 E-value=8.7e-11 Score=122.91 Aligned_cols=78 Identities=12% Similarity=0.223 Sum_probs=67.4
Q ss_pred CCCCcceEEEeCC-CCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceee---ee--EE
Q 008448 334 IVTGSRQIYLTFP-AESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC---GA--RV 407 (565)
Q Consensus 334 ~~~~~~kIfVgn~-L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~---Gr--~V 407 (565)
...++++|||||. |++.+||++|+++|++||+|.+|.|+. +||||||+|.+.++|++|++.||+..+. |+ .+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 3457789999982 468999999999999999999999987 6899999999999999999999999883 44 56
Q ss_pred EEEecc
Q 008448 408 LVKPYR 413 (565)
Q Consensus 408 ~Vk~A~ 413 (565)
.|..+.
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 677664
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.15 E-value=4.7e-11 Score=106.65 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=67.7
Q ss_pred CcceEEEeCCCCC----CCCHHHHHHHhhcCCCeeEEEeec--------CCCCcEEEEEECCHHHHHHHHHccCCceeee
Q 008448 337 GSRQIYLTFPAES----TFTEDDVSNYFNTYGPVDDVRIPC--------QQKRMFGFVTFASADTVKMILAKGNPHFVCG 404 (565)
Q Consensus 337 ~~~kIfVgn~L~~----~~TEedLr~~Fs~fG~V~~V~I~~--------gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~G 404 (565)
.++.|+|.|++.. +-.+++|++.|++||+|.+|.|+. ++++|||||+|.+.++|.+|++.||+..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5678999995432 224799999999999999999995 1357999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 008448 405 ARVLVKPYRE 414 (565)
Q Consensus 405 r~V~Vk~A~~ 414 (565)
|.|.|..+.+
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=4.1e-09 Score=90.39 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=65.6
Q ss_pred CCCCCcceEEEeCCCC----CCCCH----HHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeee
Q 008448 333 PIVTGSRQIYLTFPAE----STFTE----DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404 (565)
Q Consensus 333 ~~~~~~~kIfVgn~L~----~~~TE----edLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~G 404 (565)
..+|+.-||+|.- .+ .+.-. .+|.+.|++||+|..|+|+.++ +||+|.+.++|.+|++ ||+..++|
T Consensus 2 ~~GPpd~tv~V~~-~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 2 SSGSSGGTVLVSI-KSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CCCCSSCEEEEEE-ECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCCCCeEEEEe-ccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4567788999986 55 22333 6799999999999999999844 8999999999999998 99999999
Q ss_pred eEEEEEecccC
Q 008448 405 ARVLVKPYREK 415 (565)
Q Consensus 405 r~V~Vk~A~~K 415 (565)
|.|+|+.+.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998764
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1.3e-07 Score=85.17 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=66.2
Q ss_pred CCcceEEEeCCCCCC-CCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECC-HHHHHHHHHccC--CceeeeeEEEEEe
Q 008448 336 TGSRQIYLTFPAEST-FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFAS-ADTVKMILAKGN--PHFVCGARVLVKP 411 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~-~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~-~e~A~~Al~~lN--~~~i~Gr~V~Vk~ 411 (565)
+...-|||+| |+++ +++++|+++|++||+|..|.++.+.. .|||.|.+ +++|..|+..+| +..|+|..+.+..
T Consensus 16 ~~G~il~v~~-l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSG-DLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEE-SCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEec-CCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 4667899999 9999 99999999999999999999998554 79999999 899999999985 7888998888765
Q ss_pred cc
Q 008448 412 YR 413 (565)
Q Consensus 412 A~ 413 (565)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=6.6e-08 Score=83.41 Aligned_cols=76 Identities=22% Similarity=0.234 Sum_probs=64.6
Q ss_pred CCCCCCcceEEEeCCCCCC------CCH---HHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCcee
Q 008448 332 GPIVTGSRQIYLTFPAEST------FTE---DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV 402 (565)
Q Consensus 332 ~~~~~~~~kIfVgn~L~~~------~TE---edLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i 402 (565)
...+|+.-||+|.- ++.. +.+ .+|.+.|++||+|..|+|+..+ +||+|.+.++|.+|++ ||+..+
T Consensus 9 ~~~GPpD~Tv~V~~-~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 9 SFQGPLDATVVVNL-QSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCCCTTCEEEEEE-SSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEE
T ss_pred eecCCCCCeEEEEe-cCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeee
Confidence 35677888999997 6642 331 5688999999999999999855 9999999999999998 999999
Q ss_pred eeeEEEEEecc
Q 008448 403 CGARVLVKPYR 413 (565)
Q Consensus 403 ~Gr~V~Vk~A~ 413 (565)
+||.|+|+...
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998643
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.51 E-value=8.9e-08 Score=92.48 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=59.0
Q ss_pred CCHHHHHHHhhcCCCeeEEEeec--------CCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEeccc
Q 008448 351 FTEDDVSNYFNTYGPVDDVRIPC--------QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (565)
Q Consensus 351 ~TEedLr~~Fs~fG~V~~V~I~~--------gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~~ 414 (565)
-.+++|++.|++||+|.+|.|+. ++++||+||+|.+.++|++|+..||+..++||.|.|..+.+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45789999999999999999983 37899999999999999999999999999999999999864
No 209
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=0.0004 Score=60.72 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=66.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhc-----CCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEE
Q 008448 336 TGSRQIYLTFPAESTFTEDDVSNYFNT-----YGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEedLr~~Fs~-----fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk 410 (565)
...++|.|.| ++..+.++.|+-||+. -|+|.+|.... +-|+|+|.+++.|+++|+.. .|.|.|..|.|.
T Consensus 6 ~~~~~I~V~~-lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k~-~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRG-LPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQA-DHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEES-CCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTCS-CCBSSSSBCEEE
T ss_pred cCccEEEEEC-CCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcCC-cceecCeEEEEE
Confidence 3568999999 9999999999999987 37999998764 57999999999999999985 799999999999
Q ss_pred ecccCcc
Q 008448 411 PYREKSK 417 (565)
Q Consensus 411 ~A~~K~k 417 (565)
++.++..
T Consensus 80 P~~~~~~ 86 (104)
T 2dhx_A 80 PAPPRAP 86 (104)
T ss_dssp ECCCCCC
T ss_pred cCCCCCc
Confidence 9887653
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00081 Score=59.55 Aligned_cols=74 Identities=8% Similarity=0.046 Sum_probs=67.0
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcC-----CCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEec
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTY-----GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~f-----G~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A 412 (565)
.++|-+=+ ||.+++...|+.+..+| |.|+.|.+.. .-|=|+|.|.+..+|-+|.-.+|+..|+||+|+|.-.
T Consensus 21 ~rtiaL~~-ipDtvndarIr~lve~~~~i~~g~i~KI~L~p--DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFP-LSDKVSPSLICQFLQEEIHINEKDIRKILLVS--DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEEC-CCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET--TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEec-CCCCCCHHHHHHHHhhhhccCccceeEEEEec--CCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 57888888 99999999999999999 9999999987 3456999999999999999889999999999999876
Q ss_pred cc
Q 008448 413 RE 414 (565)
Q Consensus 413 ~~ 414 (565)
.+
T Consensus 98 ~e 99 (117)
T 2l9w_A 98 ND 99 (117)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.27 E-value=0.0079 Score=52.61 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=63.4
Q ss_pred CcceEEEeCCCCCCC-CH----HHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEe
Q 008448 337 GSRQIYLTFPAESTF-TE----DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~-TE----edLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~ 411 (565)
.+.+|+|++ |+.++ +. +.++++|.+|+++....... +-.-..|.|.++++|.+|-..+++..+.|+.++|..
T Consensus 4 ~pntLiitn-l~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk--SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 4 GSSGLIACV-ANDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCCEEEEEC-CCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CCceEEEec-CCHHHcCCHHHHHHHHHHHHhhCcCcceeecC--cceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 457899999 87643 32 56789999999999887775 333468999999999999999999999999999999
Q ss_pred cccC
Q 008448 412 YREK 415 (565)
Q Consensus 412 A~~K 415 (565)
+++-
T Consensus 81 gq~~ 84 (104)
T 1wey_A 81 AQTL 84 (104)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9843
No 212
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.14 E-value=0.0011 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.973 Sum_probs=21.9
Q ss_pred cccceeccccccCCCCCcccccc
Q 008448 183 VKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 183 ~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
.+.|.+|.+|.|+.|+.|.|+||
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHG 42 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSS
T ss_pred cccCcccCcCCCCCCCccCCcCC
Confidence 38999999999999999999999
No 213
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=95.97 E-value=0.0012 Score=53.87 Aligned_cols=24 Identities=29% Similarity=0.899 Sum_probs=22.3
Q ss_pred CcccceeccccccCCCCCcccccc
Q 008448 182 PVKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 182 ~~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
...+|.||.+|.|++|.+|+|.|.
T Consensus 15 k~~vCk~fl~G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 15 KTVVCKHWLRGLCKKGDQCEFLHE 38 (72)
T ss_dssp CCSBCHHHHTTCCCCGGGSSSBCS
T ss_pred cCeeCHHHhcCCCCCCCCCCCccc
Confidence 357899999999999999999999
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.82 E-value=0.019 Score=51.39 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=59.3
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccCCceee-eeEEEEEecccCc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC-GARVLVKPYREKS 416 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN~~~i~-Gr~V~Vk~A~~K~ 416 (565)
.+-|.|-+ .+... -..|-.+|++||+|.+...+. ...+-.|+|.+..+|++||.. |+..|+ +-.|-|++...+.
T Consensus 24 ~~wVtVFG-Fp~~~-~~~VL~~F~~~G~Iv~~~~~~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~d~~ 98 (119)
T 1wwh_A 24 DTWVTVFG-FPQAS-ASYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCIDKN 98 (119)
T ss_dssp GGEEEEEC-CCGGG-HHHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECCCHH
T ss_pred CCEEEEEC-CCHHH-HHHHHHHHHhhCcEEEeccCC--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECCCHH
Confidence 45677766 44443 566889999999999998754 456999999999999999988 899998 4888999876544
No 215
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.74 E-value=0.0024 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.947 Sum_probs=21.6
Q ss_pred cccceeccccccCCCCCcccccc
Q 008448 183 VKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 183 ~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
-.+|.||.+|.|++|.+|+|.|.
T Consensus 10 ~~~C~~fl~G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 10 TVVCKHWLRGLCKKGDQCEFLHE 32 (77)
T ss_dssp TSBCHHHHTTCCSCTTSSSSBCS
T ss_pred ceeCHhHccCcCCCCCCCCCccc
Confidence 36899999999999999999999
No 216
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.60 E-value=0.0057 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.785 Sum_probs=16.9
Q ss_pred cccceec-cccccCCCCCcccccc
Q 008448 183 VKTCHYF-NKGFCKHGSNCRYYHG 205 (565)
Q Consensus 183 ~kpC~YF-~rG~Ck~G~sCrf~HG 205 (565)
..+|.|| .+|+|++|..|+|.|.
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~ 59 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHD 59 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCC
Confidence 4567777 4777777777777777
No 217
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.33 E-value=0.0037 Score=50.57 Aligned_cols=22 Identities=36% Similarity=1.054 Sum_probs=20.5
Q ss_pred ccceeccccccCCCCC-cccccc
Q 008448 184 KTCHYFNKGFCKHGSN-CRYYHG 205 (565)
Q Consensus 184 kpC~YF~rG~Ck~G~s-Crf~HG 205 (565)
.+|.+|.+|.|++|.+ |+|.|.
T Consensus 7 ~vC~~f~~G~C~rg~~~C~f~H~ 29 (70)
T 3d2q_A 7 EVCREYQRGNCNRGENDCRFAHP 29 (70)
T ss_dssp EBCHHHHTTCCSSCTTTCSSBCC
T ss_pred hhCHHHhcCCCCCCCCCCCCccC
Confidence 4799999999999995 999998
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.30 E-value=0.015 Score=52.95 Aligned_cols=62 Identities=19% Similarity=0.338 Sum_probs=49.7
Q ss_pred CHHHHHHHhhcCCCeeE-EEeec------------C-----CCCcEEEEEECCHHHHHHHHHccCCceeeeeEEEEEecc
Q 008448 352 TEDDVSNYFNTYGPVDD-VRIPC------------Q-----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (565)
Q Consensus 352 TEedLr~~Fs~fG~V~~-V~I~~------------g-----k~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr~V~Vk~A~ 413 (565)
....|-++|++||.|.+ +.+.. . ....+-.|+|++..+|.+||.. |+..|+|..|-|+++.
T Consensus 19 ~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 19 MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVFNGVLLGVIPYT 97 (132)
T ss_dssp GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEECC
T ss_pred HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEECC
Confidence 45667899999999987 32211 0 1346789999999999999988 8999999999999996
Q ss_pred c
Q 008448 414 E 414 (565)
Q Consensus 414 ~ 414 (565)
+
T Consensus 98 ~ 98 (132)
T 3p3d_A 98 K 98 (132)
T ss_dssp H
T ss_pred H
Confidence 4
No 219
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=95.29 E-value=0.0057 Score=49.70 Aligned_cols=25 Identities=28% Similarity=0.906 Sum_probs=22.0
Q ss_pred CCcccceecc-ccccCCCCCcccccc
Q 008448 181 LPVKTCHYFN-KGFCKHGSNCRYYHG 205 (565)
Q Consensus 181 ~~~kpC~YF~-rG~Ck~G~sCrf~HG 205 (565)
..-++|.||. .|.|+.|.+|+|+|+
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~ 35 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHG 35 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSS
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCC
Confidence 3457899995 899999999999999
No 220
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=94.93 E-value=0.0065 Score=52.44 Aligned_cols=29 Identities=31% Similarity=0.949 Sum_probs=23.8
Q ss_pred cccceeccccccCCCCCcccccc-ccccch
Q 008448 183 VKTCHYFNKGFCKHGSNCRYYHG-LVSESF 211 (565)
Q Consensus 183 ~kpC~YF~rG~Ck~G~sCrf~HG-~~~d~~ 211 (565)
-..|.||.+|.|++|.+|+|.|. .+=..|
T Consensus 13 ~~lC~~f~~G~C~~G~~C~f~H~~~~C~~f 42 (98)
T 2cqe_A 13 RELCKFYITGFCARAENCPYMHGDFPCKLY 42 (98)
T ss_dssp CSBCTTTTTTCCSCSTTCSSBSSSSBCSHH
T ss_pred CccCcccccCcCCCCCCCCCCCCCCcCcCc
Confidence 45899999999999999999995 543444
No 221
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.76 E-value=0.0052 Score=49.97 Aligned_cols=23 Identities=35% Similarity=0.895 Sum_probs=0.0
Q ss_pred cccce-eccccccCCCCCcccccc
Q 008448 183 VKTCH-YFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 183 ~kpC~-YF~rG~Ck~G~sCrf~HG 205 (565)
-++|. |+..|+|++|..|+|.|+
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~ 73 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHN 73 (77)
T ss_dssp ------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCC
Confidence 46897 556899999999999999
No 222
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=94.62 E-value=0.0078 Score=48.66 Aligned_cols=22 Identities=36% Similarity=0.961 Sum_probs=20.6
Q ss_pred cccceeccccccCCCCCcccccc
Q 008448 183 VKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 183 ~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
.-.|.+|.+|.|.+| +|+|+|.
T Consensus 42 ~~vC~~flkG~C~r~-~C~y~H~ 63 (70)
T 3d2q_A 42 VTVCMDYIKGRCSRE-KCKYFHP 63 (70)
T ss_dssp EEBCHHHHTTCCCCT-TCCSBCC
T ss_pred ceeccccCcCCCCCC-CcCeeCC
Confidence 467999999999999 9999998
No 223
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.43 E-value=0.012 Score=49.42 Aligned_cols=22 Identities=27% Similarity=0.892 Sum_probs=20.5
Q ss_pred ccceeccccccCCCC-Ccccccc
Q 008448 184 KTCHYFNKGFCKHGS-NCRYYHG 205 (565)
Q Consensus 184 kpC~YF~rG~Ck~G~-sCrf~HG 205 (565)
-.|++|.+|.|++|. .|+|+|.
T Consensus 10 ~VCr~FlrG~C~r~d~~C~f~H~ 32 (83)
T 3d2n_A 10 EVCREFQRGTCSRPDTECKFAHP 32 (83)
T ss_dssp EBCTTGGGTCCCSCTTTCSSBCC
T ss_pred hhcHHHhcCCCCCCCCCCCCcCC
Confidence 479999999999995 8999999
No 224
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.87 E-value=0.16 Score=43.32 Aligned_cols=66 Identities=6% Similarity=0.116 Sum_probs=55.1
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCC------CCcEEEEEECCHHHHHHHHHccCCceeeee
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ------KRMFGFVTFASADTVKMILAKGNPHFVCGA 405 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk------~RGfaFVtF~~~e~A~~Al~~lN~~~i~Gr 405 (565)
.||.|.+ ||..+||+++.+.++.+..+.-.....|+ .-.-|+|.|.+.+++..-.+..+++.+-+.
T Consensus 2 ~KvVIRr-LPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRR-LPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEE-ECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeC-CCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4899999 99999999999999999988777666443 224599999999999999999888877543
No 225
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.78 E-value=0.013 Score=50.63 Aligned_cols=23 Identities=35% Similarity=0.899 Sum_probs=21.1
Q ss_pred CcccceeccccccCCCCCcccccc
Q 008448 182 PVKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 182 ~~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
..-.|.+|.+|.|.+| +|+|+|.
T Consensus 55 ~~~vC~~flkG~C~r~-~C~y~H~ 77 (98)
T 2e5s_A 55 TVTVCMDYIKGRCMRE-KCKYFHP 77 (98)
T ss_dssp EEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ccccchhhccCCCCCC-CcCccCC
Confidence 3568999999999999 9999999
No 226
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=93.40 E-value=0.058 Score=42.79 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=38.0
Q ss_pred HHHHhhhhccCCCchhhhhhhhhcc-cchhHHhhcCchHHHHHHHHHHHHHH
Q 008448 8 RIVFNRIKKLDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAEL 58 (565)
Q Consensus 8 ~~v~~ri~~~~pe~a~ki~g~ll~q-e~~mirla~gp~~~~~~~~~~ak~~l 58 (565)
.-+|.+|++++|+.|.||.|.||=- -.|++.|=-.| ..|++-|..|-.-|
T Consensus 7 e~Lyp~V~~~~p~~A~KITGMLLE~d~~ell~ll~~~-e~L~~kv~EA~~vl 57 (61)
T 1i2t_A 7 ERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASE-DSLRARVDEAMELI 57 (61)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHTTSCHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccchhhhhccCCHHHHHHHHcCH-HHHHHHHHHHHHHH
Confidence 4589999999999999999998864 56677765554 45677777775544
No 227
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=93.36 E-value=0.017 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.922 Sum_probs=21.1
Q ss_pred cccceeccccccCCCC-Ccccccc
Q 008448 183 VKTCHYFNKGFCKHGS-NCRYYHG 205 (565)
Q Consensus 183 ~kpC~YF~rG~Ck~G~-sCrf~HG 205 (565)
.-+|.+|.+|.|++|. .|+|+|-
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~ 40 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHP 40 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCC
T ss_pred hhhchHHhcCCCCCCCCCCCCcCC
Confidence 3489999999999998 8999998
No 228
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.26 E-value=0.015 Score=50.25 Aligned_cols=22 Identities=36% Similarity=1.040 Sum_probs=20.8
Q ss_pred ccceeccccccCCCC-Ccccccc
Q 008448 184 KTCHYFNKGFCKHGS-NCRYYHG 205 (565)
Q Consensus 184 kpC~YF~rG~Ck~G~-sCrf~HG 205 (565)
.+|.+|.+|.|++|. .|+|.|.
T Consensus 21 ~VCr~FlrG~C~rgd~~C~FsH~ 43 (98)
T 2e5s_A 21 EVCREFQRGNCARGETDCRFAHP 43 (98)
T ss_dssp EBCSHHHHTCCSSHHHHCSSBCC
T ss_pred hhhHHHhcCcCCCCCCCCCCcCC
Confidence 589999999999998 6999999
No 229
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.95 E-value=0.042 Score=59.52 Aligned_cols=56 Identities=13% Similarity=0.389 Sum_probs=41.8
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHc
Q 008448 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAK 396 (565)
Q Consensus 338 ~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~ 396 (565)
.+.|||. .+..+++.+|.+||++||+|.++.+-. ...-||.|+|.+.+++.+++..
T Consensus 53 ~rsv~v~--~~~~~~~~~l~~y~~~~g~i~~~~~~~-~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH--CPEKISENKFLKYLSQFGPINNHFFYE-SFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE--ECCC---CHHHHHHGGGSCCCCEEEEC-SSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE--cCCCCCHHHHHHHHHhcCCcceEEEEc-cCCeEEEEEeCCHHHHHHHHhc
Confidence 3689997 577899999999999999999997765 2346999999999999988765
No 230
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=92.45 E-value=0.03 Score=46.99 Aligned_cols=23 Identities=39% Similarity=0.753 Sum_probs=21.1
Q ss_pred CcccceeccccccCCCCCcccccc
Q 008448 182 PVKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 182 ~~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
..-.|.+|.+|.|.+| +|+|+|.
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~ 64 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHP 64 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCC
T ss_pred ceeehhHhhhccccCC-CcceeCC
Confidence 3568999999999998 9999999
No 231
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=91.83 E-value=0.077 Score=47.67 Aligned_cols=31 Identities=6% Similarity=-0.052 Sum_probs=25.6
Q ss_pred EEee--cCCCCcEEEEEECCHHHHHHHHHccCC
Q 008448 369 VRIP--CQQKRMFGFVTFASADTVKMILAKGNP 399 (565)
Q Consensus 369 V~I~--~gk~RGfaFVtF~~~e~A~~Al~~lN~ 399 (565)
+.|+ .++++|||||+|.+.++|++|++.+++
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcc
Confidence 4444 367899999999999999999988754
No 232
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.66 E-value=0.038 Score=45.33 Aligned_cols=22 Identities=27% Similarity=0.869 Sum_probs=20.2
Q ss_pred cccceeccc-cccCCCCCcccccc
Q 008448 183 VKTCHYFNK-GFCKHGSNCRYYHG 205 (565)
Q Consensus 183 ~kpC~YF~r-G~Ck~G~sCrf~HG 205 (565)
..+|.||.+ |.|. |..|+|.|.
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~ 60 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHI 60 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCC
T ss_pred CCCCcccCCCCccC-CCCeeccCC
Confidence 357999999 9999 899999999
No 233
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=91.52 E-value=0.11 Score=43.83 Aligned_cols=50 Identities=28% Similarity=0.479 Sum_probs=38.1
Q ss_pred HHHHhhhhccCCCchhhhhhhhhcc-cchhHHhhcCchHHHHHHHHHHHHHH
Q 008448 8 RIVFNRIKKLDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAEL 58 (565)
Q Consensus 8 ~~v~~ri~~~~pe~a~ki~g~ll~q-e~~mirla~gp~~~~~~~~~~ak~~l 58 (565)
.-+|.+|++++||.|.||.|.||=- ..|++.|=-.|| .|++-|..|-.-|
T Consensus 28 E~LyplV~~~~p~~AgKITGMLLEmd~~Ell~Lles~e-~L~~kv~EA~~vL 78 (85)
T 2dyd_A 28 ENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPD-ALKAKVAEAMEVL 78 (85)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHCHHHHHHHTTCSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccchhhhhhhcCCHHHHHHHHcCHH-HHHHHHHHHHHHH
Confidence 4589999999999999999998864 667777765555 4566666665444
No 234
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=91.42 E-value=0.1 Score=44.04 Aligned_cols=50 Identities=24% Similarity=0.371 Sum_probs=37.6
Q ss_pred HHHHhhhhccCCCchhhhhhhhhcc-cchhHHhhcCchHHHHHHHHHHHHHH
Q 008448 8 RIVFNRIKKLDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAEL 58 (565)
Q Consensus 8 ~~v~~ri~~~~pe~a~ki~g~ll~q-e~~mirla~gp~~~~~~~~~~ak~~l 58 (565)
.-+|.+|++++||.|.||.|.||=- -.|++.|=- .+.+|++-|..|-.-|
T Consensus 29 E~LyplV~~~~p~~AgKITGMLLEmd~~ElL~Lle-~~e~L~~kV~EA~~vL 79 (85)
T 1nmr_A 29 ERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLD-TPGLLDAKVQEALEVL 79 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCSCTHHHHHHTTCC-THHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccccchhhHhHhcCCHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 4589999999999999999998865 566666644 5556677777665433
No 235
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=90.89 E-value=0.2 Score=42.55 Aligned_cols=53 Identities=30% Similarity=0.358 Sum_probs=41.0
Q ss_pred HHHHhhhhccCCCchhhhhhhhhcc-cchhHHhhcCchHHHHHHHHHHHHHHHhh
Q 008448 8 RIVFNRIKKLDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAELQQL 61 (565)
Q Consensus 8 ~~v~~ri~~~~pe~a~ki~g~ll~q-e~~mirla~gp~~~~~~~~~~ak~~l~~~ 61 (565)
.-+|.+|++++|+.|.||.|.||=- -.|++.|-=. +..|++-|..|-.-|...
T Consensus 26 E~Lyp~V~~~~p~~A~KITGMLLEmd~~Ell~lle~-~e~L~~kV~EA~~vL~~~ 79 (88)
T 3kuj_A 26 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLES-PESLRSKVDEAVAVLQAH 79 (88)
T ss_dssp HHHHHHHHHHCTTTHHHHHHHHTTSCHHHHHHHHHC-HHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHhhCCCccchhhhHhhcCCHHHHHHHHcC-HHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999865 6666666544 556788888887766543
No 236
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=90.76 E-value=0.047 Score=44.40 Aligned_cols=22 Identities=27% Similarity=0.892 Sum_probs=20.5
Q ss_pred cccceeccc-cccCCCCCcccccc
Q 008448 183 VKTCHYFNK-GFCKHGSNCRYYHG 205 (565)
Q Consensus 183 ~kpC~YF~r-G~Ck~G~sCrf~HG 205 (565)
..+|.||.+ |.|.+ ..|+|.|.
T Consensus 44 ~~~C~~f~~~G~C~~-~~C~y~H~ 66 (72)
T 2rhk_C 44 MSECYFYSKFGECSN-KECPFLHI 66 (72)
T ss_dssp CCBCHHHHHHSCCSB-TTCCSBCC
T ss_pred CCcccccCCCCCCCC-CCeeccCC
Confidence 458999999 99999 99999999
No 237
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.20 E-value=0.099 Score=46.79 Aligned_cols=43 Identities=12% Similarity=-0.047 Sum_probs=38.5
Q ss_pred CCCCcEEEEEECCHHHHHHHHHcc-CCceeeeeEEEEEecccCcc
Q 008448 374 QQKRMFGFVTFASADTVKMILAKG-NPHFVCGARVLVKPYREKSK 417 (565)
Q Consensus 374 gk~RGfaFVtF~~~e~A~~Al~~l-N~~~i~Gr~V~Vk~A~~K~k 417 (565)
++.+|+++|+|.+.++|++|++.+ |+..++| .+.|.++..+..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~ 53 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFT 53 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccc
Confidence 567999999999999999999999 9999999 999998876543
No 238
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=90.09 E-value=0.22 Score=42.55 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=41.0
Q ss_pred HHHHhhhhc--cCCCchhhhhhhhhcc-cchhHHhhcCchHHHHHHHHHHHHHHHhh
Q 008448 8 RIVFNRIKK--LDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAELQQL 61 (565)
Q Consensus 8 ~~v~~ri~~--~~pe~a~ki~g~ll~q-e~~mirla~gp~~~~~~~~~~ak~~l~~~ 61 (565)
.-+|.+|++ ++||.|.||.|.||=- -.|++.|=- .+.+|++-|..|-.-|.-.
T Consensus 26 E~LyplV~~~~~~pelAgKITGMLLEmd~~ElL~LLe-s~e~L~~kV~EA~~vL~~~ 81 (92)
T 1ifw_A 26 EQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLE-SDELFEQHYKEASAAYESF 81 (92)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccchhhHhHhcCCHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence 458999999 9999999999998864 666777654 5556778888887766543
No 239
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=89.34 E-value=0.96 Score=39.14 Aligned_cols=55 Identities=11% Similarity=0.290 Sum_probs=42.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHcc
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~l 397 (565)
..+-++| . .|.++...||..+|+.||.|. |+.+. ---|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l-~-FP~ewKt~DI~~lFs~fggv~-I~Wid---DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-T-FPKEWKTSDLYQLFSAFGNIQ-ISWID---DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-E-CCTTCCHHHHHHHHTTTCSCC-CEEEE---TTEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-e-CChhhhhHHHHHHhhccCCEE-EEEEc---CCeEEEEecCHHHHHHHHHhc
Confidence 3455666 5 788899999999999999443 33332 236999999999999999865
No 240
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=88.63 E-value=0.097 Score=44.45 Aligned_cols=22 Identities=41% Similarity=0.801 Sum_probs=20.5
Q ss_pred cccceeccccccCCCCCcccccc
Q 008448 183 VKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 183 ~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
.-.|.+|.+|.|.++ +|+|+|.
T Consensus 51 ~~vC~dflkG~C~r~-~Cky~H~ 72 (89)
T 2rpp_A 51 VIACFDSLKGRCSRE-NCKYLHP 72 (89)
T ss_dssp EEBCHHHHHTCCCCT-TCCSBCC
T ss_pred eeeehhhhhCcCCCC-CcceecC
Confidence 568999999999998 9999999
No 241
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=87.13 E-value=0.62 Score=40.43 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=42.3
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccC
Q 008448 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN 398 (565)
Q Consensus 339 ~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN 398 (565)
+-++| . .|.++...||..+|+.|| -..|+.+. -.-|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~-FP~ewKt~Di~~lFs~fg-gv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-T-FPKEWKTSDLYQLFSAFG-NIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-E-CCTTCCHHHHHHHTTTSE-EEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-e-CChhhhhHHHHHHHhccC-CEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 45666 5 788889999999999999 33444443 2369999999999999999753
No 242
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=85.21 E-value=1.2 Score=38.26 Aligned_cols=67 Identities=7% Similarity=0.105 Sum_probs=49.9
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCC------CCcEEEEEECCHHHHHHHHHccCCceeee
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ------KRMFGFVTFASADTVKMILAKGNPHFVCG 404 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk------~RGfaFVtF~~~e~A~~Al~~lN~~~i~G 404 (565)
.+-||.|.+ ||..+||+++.+.++.+=++.-.....|+ .-.-|+|.|.+.+++..-.+..+++.+-+
T Consensus 8 ~~~KvVIRr-LPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRR-LPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEEC-CCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeC-CCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 346899999 99999999988887766554332222222 12358999999999999999988887754
No 243
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=82.21 E-value=0.76 Score=34.90 Aligned_cols=27 Identities=30% Similarity=0.706 Sum_probs=20.9
Q ss_pred Ccccceec-cccccCCCCCcccccc-ccc
Q 008448 182 PVKTCHYF-NKGFCKHGSNCRYYHG-LVS 208 (565)
Q Consensus 182 ~~kpC~YF-~rG~Ck~G~sCrf~HG-~~~ 208 (565)
.-.+|.-| +-|||.+|-.|.+.|- .+|
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl~ 47 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISGP 47 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCCC
Confidence 45677655 4599999999999998 443
No 244
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=81.24 E-value=0.59 Score=42.99 Aligned_cols=51 Identities=33% Similarity=0.466 Sum_probs=39.5
Q ss_pred HHHhhhhccCCCchhhhhhhhhcc-cchhHHhhcCchHHHHHHHHHHHHHHHh
Q 008448 9 IVFNRIKKLDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAELQQ 60 (565)
Q Consensus 9 ~v~~ri~~~~pe~a~ki~g~ll~q-e~~mirla~gp~~~~~~~~~~ak~~l~~ 60 (565)
-+|-+|++++||+|.||.|.||=- -.|++.|=-.|| +|++.|..|-.-|--
T Consensus 73 ~LyplV~~~~p~~A~KITGMLLEmd~~ElL~LLes~e-~L~~kV~EA~~vL~~ 124 (144)
T 1g9l_A 73 RLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPE-SLRSKVDEAVAVLQA 124 (144)
T ss_dssp SSHHHHHHHTTSCCSSHHHHTTTSSSHHHHHHHHCTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCccccchhhhhhccCCHHHHHHHHcCHH-HHHHHHHHHHHHHHH
Confidence 368999999999999999998864 677887765555 567777777666644
No 245
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=77.50 E-value=0.054 Score=46.64 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCcceEEEeCCCCCCCCHHH
Q 008448 336 TGSRQIYLTFPAESTFTEDD 355 (565)
Q Consensus 336 ~~~~kIfVgn~L~~~~TEed 355 (565)
....+|||+| |+.++|++.
T Consensus 95 ~~~~~lyv~N-l~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKN-FGPGSTRAA 113 (115)
T ss_dssp --------------------
T ss_pred CCCCceEeCC-CCCCccccc
Confidence 3456899999 999999874
No 246
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=57.14 E-value=27 Score=37.87 Aligned_cols=56 Identities=14% Similarity=0.373 Sum_probs=44.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecCCCCcEEEEEECCHHHHHHHHHccC
Q 008448 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN 398 (565)
Q Consensus 337 ~~~kIfVgn~L~~~~TEedLr~~Fs~fG~V~~V~I~~gk~RGfaFVtF~~~e~A~~Al~~lN 398 (565)
.++.++|+. +..+...+|.+.|+.||.| +|+.+. ...|||.|.+.+.|..++..++
T Consensus 439 R~~vl~v~f--~~~~~~~~i~~~fs~fg~v-~V~wid---dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVTF--PKEWKTSDLYQLFSAFGNI-QISWID---DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEEC--CTTCCHHHHHHHGGGGCCC-EEEECS---SSEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEeC--CCCCCHHHHHHHHHhcCCE-EEEEEc---CCeEEEEECCHHHHHHHHHHHH
Confidence 456777774 5566789999999999954 555553 4579999999999999999874
No 247
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=36.66 E-value=9.4 Score=37.53 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=22.0
Q ss_pred CCcccceecccccc----CCCCCcccccc
Q 008448 181 LPVKTCHYFNKGFC----KHGSNCRYYHG 205 (565)
Q Consensus 181 ~~~kpC~YF~rG~C----k~G~sCrf~HG 205 (565)
..+..|+||--|.| ..|+.|||.|-
T Consensus 87 ~~LHLCK~~l~G~C~~~~~~~~~Ck~SHd 115 (229)
T 3u9g_A 87 DSLHLCKLNLLGRCHYAQSQRNLCKYSHD 115 (229)
T ss_dssp CSBCCCHHHHTTCCGGGTCCSSCCSSCSC
T ss_pred cceeechhhhcCcCCcccCCCCCcccccc
Confidence 46889999999999 45788999998
No 248
>1i25_A Huwentoxin-II, HWTX-II; neurotoxin, insecticidal toxin, disulfide bonds; NMR {Ornithoctonus huwena} SCOP: g.3.6.2
Probab=35.89 E-value=11 Score=26.48 Aligned_cols=20 Identities=35% Similarity=0.746 Sum_probs=16.9
Q ss_pred cCCcccceeccccccCCCCCccc
Q 008448 180 ELPVKTCHYFNKGFCKHGSNCRY 202 (565)
Q Consensus 180 ~~~~kpC~YF~rG~Ck~G~sCrf 202 (565)
-.|-|||+ +--|+.|..|+|
T Consensus 12 KeG~kpCK---~KKC~GGWkCK~ 31 (37)
T 1i25_A 12 KEGDKPCK---KKKCKGGWKCKF 31 (37)
T ss_dssp BCSSSBCB---CCCCCTTEEECS
T ss_pred ccCCCccc---cccCCCCceEEE
Confidence 35779998 778999999987
No 249
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=33.28 E-value=9 Score=37.58 Aligned_cols=25 Identities=32% Similarity=0.737 Sum_probs=0.0
Q ss_pred ccCCcccceeccccccCCCCCcccccc
Q 008448 179 AELPVKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 179 ~~~~~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
++..|.||-|=- -|..|+.|+|.|-
T Consensus 188 ~~~~~~~~~~~~--~~~~~~~~~~~~~ 212 (223)
T 3v33_A 188 LEHRKQPCPYGR--KCTYGIKCRFFHP 212 (223)
T ss_dssp ---------------------------
T ss_pred cccCCCCCCCCc--ccccCCcceecCC
Confidence 445688999955 5999999999997
No 250
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=23.73 E-value=20 Score=35.29 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=20.6
Q ss_pred cccceeccccccCCCCCcccccc
Q 008448 183 VKTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 183 ~kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
+.+|.||-+|-|+. .+|+-.|.
T Consensus 175 LHIC~~Fl~G~C~f-~~CkRsH~ 196 (229)
T 3u9g_A 175 LHICEHFTRGNCSY-LNCLRSHN 196 (229)
T ss_dssp BCSCHHHHTTCCCC-SSCSSCCC
T ss_pred eeccchhhcCCcCC-CCccCccC
Confidence 68999999999999 89999998
No 251
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=20.41 E-value=24 Score=26.49 Aligned_cols=21 Identities=33% Similarity=0.896 Sum_probs=17.0
Q ss_pred ccceeccccccCCCCCcccccc
Q 008448 184 KTCHYFNKGFCKHGSNCRYYHG 205 (565)
Q Consensus 184 kpC~YF~rG~Ck~G~sCrf~HG 205 (565)
.||.=-.++||.|| .|+|.++
T Consensus 10 ~~C~~~~~~yC~nG-~C~~i~~ 30 (50)
T 2rnl_A 10 NPCNAEFQNFCIHG-ECKYIEH 30 (50)
T ss_dssp CTTTTTGGGTCSSS-EEEEETT
T ss_pred cccCchhhCcCCCC-EEEEecC
Confidence 47766557999999 9999887
Done!