BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008449
(565 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2
PE=1 SV=3
Length = 1042
Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust.
Identities = 280/567 (49%), Positives = 375/567 (66%), Gaps = 17/567 (2%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
MPA+TV+FTN RKFDG FRWISSGEYIQMSGRAGRRG+D+RGI ILMVD+KM P+ K
Sbjct: 491 MPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ 550
Query: 61 MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEE 120
+LKGSAD LNSAFHL+YNM+LN +R EE +PE +L SFYQFQ AIP + ++ K EE
Sbjct: 551 LLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEE 610
Query: 121 ERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDN 180
+ + +VI E+S+ YY + QQ L K++ + + PKYCLPFLQPGR V ++ GDD
Sbjct: 611 QYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVK-NEGDD- 668
Query: 181 SPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVV-SKDGAGKKTL 239
WGVV+ F K V N D Y V +L RC S + +
Sbjct: 669 ----------FGWGVVVNFSKKSNV---KPNSGELDPLYVVEVLLRCSKESLKNSATEAA 715
Query: 240 KIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLP 299
K E GE VV V + + +SS RL +PKDL P+ R+++LKS E R G+P
Sbjct: 716 KPAKPDEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGIP 775
Query: 300 L-DPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSI 358
L DP +MGI+ +K+++++EA E H + P +E + K ++ IKS
Sbjct: 776 LLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSA 835
Query: 359 KRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNG 418
KR+++ + + DELK RKRVLRRLG+ATS DV+E+KG+VACEISSA+EL LTE++FNG
Sbjct: 836 KRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNG 895
Query: 419 VLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDV 478
+ D+ E+ +LLSCFV+QE + K E+L Q+Q+ A+R+AKV E K++ID
Sbjct: 896 LFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDE 955
Query: 479 EGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIG 538
E +++SF+P +M+ VY WA G+ F I ++T VFEGS+IR +RRLEE+L+Q+ AAK+IG
Sbjct: 956 ETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIG 1015
Query: 539 ETELEAKFEEAVSKIKRDIVFAASLYL 565
TELE KF E ++KIKRDIVFAASLYL
Sbjct: 1016 NTELENKFAEGITKIKRDIVFAASLYL 1042
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2
PE=2 SV=1
Length = 1040
Score = 533 bits (1372), Expect = e-150, Method: Compositional matrix adjust.
Identities = 277/567 (48%), Positives = 375/567 (66%), Gaps = 17/567 (2%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
MPA+TV+FTN RK+DG FRWISSGEYIQMSGRAGRRG+D+RGI ILMVD+KM P+ K
Sbjct: 489 MPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ 548
Query: 61 MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEE 120
+LKGSAD LNSAFHL+YNM+LN +R EE +PE +L SFYQFQ AIP + ++ K EE
Sbjct: 549 LLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEE 608
Query: 121 ERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDN 180
+ + +VI E+++ YY + QQ L K++ + + PKYCLPFLQPGR V ++ GDD
Sbjct: 609 QYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVK-NEGDD- 666
Query: 181 SPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVV-SKDGAGKKTL 239
WGVV+ F K V N D Y V +L RC S + +
Sbjct: 667 ----------FGWGVVVNFSKKSNV---KPNSGELDPLYVVEVLLRCSKESLKNSATEAA 713
Query: 240 KIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLP 299
K E GE VV V + + +S+ RL +PKDL P+ R+++LKS E R G+P
Sbjct: 714 KPAKPDEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQRRFPDGVP 773
Query: 300 L-DPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSI 358
L DP +MGI+ +K+++++EA E H + P +E + K ++ IKS
Sbjct: 774 LLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERKAQIALDIKSA 833
Query: 359 KRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNG 418
KR+++ + + DELK RKRVLRRLG+ATS DV+E+KG+VACEISSA+EL LTE++FNG
Sbjct: 834 KRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNG 893
Query: 419 VLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDV 478
+ D+ E+ +LLSCFV+QE + K E+L Q+Q+ A+R+AKV E K++ID
Sbjct: 894 LFNDLSSEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDE 953
Query: 479 EGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIG 538
E +++SF+P +M+ VY WA G+ F I ++T VFEGS+IR +RRLEE+L+Q+ AAK+IG
Sbjct: 954 ETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIG 1013
Query: 539 ETELEAKFEEAVSKIKRDIVFAASLYL 565
TELE KF E ++KIKRDIVFAASLYL
Sbjct: 1014 NTELENKFAEGITKIKRDIVFAASLYL 1040
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 452 bits (1163), Expect = e-126, Method: Compositional matrix adjust.
Identities = 253/573 (44%), Positives = 357/573 (62%), Gaps = 22/573 (3%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
MPAKTVVFTNVRKFDG FRWIS GEYIQMSGRAGRRG+D+RGI ILM+D+KM+P AK
Sbjct: 559 MPAKTVVFTNVRKFDGKTFRWISGGEYIQMSGRAGRRGLDDRGIVILMIDEKMDPPVAKS 618
Query: 61 MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEE 120
MLKG AD L+SAFHLSYNM+LN +R E SPE +L F+QFQ +P LE + + ++
Sbjct: 619 MLKGEADRLDSAFHLSYNMILNLLRVEGISPEFMLERCFFQFQNSLEVPKLEAKLEESQQ 678
Query: 121 ERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDN 180
DS I +E L+ Y+ L Q + + DVR +V P +CL FLQ GR V ++ D
Sbjct: 679 HYDSFTILDERPLEEYHTLKTQLERYRTDVRTVVNHPNFCLSFLQGGRLVRVKVGNED-- 736
Query: 181 SPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKDGAGKKTLK 240
WGVV+ K + + + +N+ +Y V+ L V S G +
Sbjct: 737 ----------FDWGVVVNVSK-RPLPKGQSNEYLPQESYIVHTLV-MVASDTGPLRIRSG 784
Query: 241 IVP------LKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARN 294
+P ++ G+ VV +S + ++ R+ +P DL + + K+ SE R
Sbjct: 785 HLPEVHPPAAEDKGKFEVVPFLLSSLDGIAHIRVFLPNDLKSQGQKLTVGKALSEVKRRF 844
Query: 295 ASGLP-LDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTA 353
G+ LDP NM I+ ++ KL++++ LES + + +E+K K L
Sbjct: 845 PEGITLLDPVENMNIKEPTFIKLMKKVNILESRLLSNPLHNFSELEEKYAEYLRKLALLE 904
Query: 354 KIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTE 413
++K +K+++ + + DEL +RKRVLRRLG+ TSDDV+E+KG+VACEISS + L LTE
Sbjct: 905 EVKDLKKKLSKARSIMQLDELNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLLTE 964
Query: 414 LIFNGVLKDVKVEEMVSLLSCFVWQEKLQ-DASKPREELELLFTQLQDTARRVAKVQLEC 472
LIFNG+ D+ E+ +LLSC V+QEK + + + +EEL LQ+ ARR+AKV E
Sbjct: 965 LIFNGMFNDLTPEQCAALLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKES 1024
Query: 473 KVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLIL 532
K +++ E +VNSF+P +ME VYAWA G+ F +I ++T V+EGSLIR RRLEE+++Q++
Sbjct: 1025 KQELNEEEYVNSFKPSLMEVVYAWAHGASFAQICKMTDVYEGSLIRMFRRLEELIRQMVD 1084
Query: 533 AAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 565
AAK IG T L+ K E+ ++ I RDIVF+ASLYL
Sbjct: 1085 AAKVIGNTSLQQKMEDTIACIHRDIVFSASLYL 1117
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust.
Identities = 241/581 (41%), Positives = 357/581 (61%), Gaps = 34/581 (5%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
MPAKTVVFT+VRK+DG +FRW+S GEYIQMSGRAGRRG+D+RGI I+M+D+KMEP AK
Sbjct: 511 MPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 570
Query: 61 MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEE 120
M+KG AD L+SAFHL YNM+LN +R E SPE +L +SF+QFQ ++P +EK+ L++
Sbjct: 571 MVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKK 630
Query: 121 ERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDN 180
+ D + +E+E+++K Y+ + Q K ++DVR +V P L FLQPGR V I G DN
Sbjct: 631 DFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVN-GKDN 689
Query: 181 SPSFSTEDHQVTWGVVIEFEK------VKGVYEDDANKKPEDSNYTVNILTRCVVSKDGA 234
WG V++F K VY D +Y VN++ +
Sbjct: 690 ----------YGWGAVVDFAKRINKRNPSAVYTDH-------ESYIVNVVVNTMYIDSPV 732
Query: 235 G-----KKTLK--IVPLKESGEPLVVSVPIS--QIIKLSSARLPMPKDLLPLQTRENMLK 285
TL I P +E + + +PI+ I + + RL MPKD+ +E + K
Sbjct: 733 NLLKPFNPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGK 792
Query: 286 STSEFLARNASGLP-LDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKV 344
S E R G+P LDP NM I + KL+++I+ L + + ++ S +E+
Sbjct: 793 SLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGK 852
Query: 345 LHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEIS 404
K +L +K +KR++ S + D+L+ RKRVLRRLG+ T +D++ELKG+VACEIS
Sbjct: 853 YSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEIS 912
Query: 405 SAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARR 464
S +EL LTELIFNG ++K E+ +LLSCF +QE+ ++A + + EL +++ A +
Sbjct: 913 SGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAK 972
Query: 465 VAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLE 524
+AK+ + K+++ + +V SFR ++ME VY W +G+ F +I ++T V+EGSLIR +RLE
Sbjct: 973 IAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLE 1032
Query: 525 EVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 565
E++++L+ A +IG + L+ K E + I RDIV A SLYL
Sbjct: 1033 ELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1073
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1
Length = 1026
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 217/571 (38%), Positives = 338/571 (59%), Gaps = 28/571 (4%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
MPA+TVVFT+ RKFDG R+I+SGEYIQM+GRAGRRG D+RG ILMVD M AK
Sbjct: 478 MPARTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQ 537
Query: 61 MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEE 120
++KG+ D LNS F L+YNM+LN +R E + ++ NSF+QFQ+ IP+++K+ +E
Sbjct: 538 IIKGATDPLNSQFRLTYNMVLNLMRVEGMAVSWIINNSFHQFQSYAKIPEIDKKCVQVER 597
Query: 121 ERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDN 180
+ S E+ ++ +L Q ++ ++ + I PKY + FL GR ++
Sbjct: 598 KIASFNFPWENEMRTLVDLQDQLEATRQRIIQIQREPKYIVGFLHAGRLFKVK------- 650
Query: 181 SPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCV-VSKDGAGKKT- 238
+ D WG++ +F+K + P+D N + + + ++ +G T
Sbjct: 651 -----SGDRDFKWGILNQFKK---------EQNPDDRNDQIYLCDMMIAINTEGRFDPTN 696
Query: 239 -LKIVPLKESGEPLVVSVP--ISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNA 295
+VP + + + VP I +I +S+ RL +P D+ + + + R
Sbjct: 697 PATLVPGFDLPKRRWIRVPMTIDRITAISAVRLKVPADIDKPDGQMRLDGMMAAATKRFG 756
Query: 296 SGLP-LDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAK 354
+ +P LDP +M I++ ++L+ R ++LE + H ++K ++ K KQ+ +
Sbjct: 757 NQIPLLDPIQDMEIKTVEMKELIAREKSLEGRLETHSMTKRDNMKDLKKQFEQKQDAVKE 816
Query: 355 IKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTEL 414
+ ++K + +S +EL RKRVLRRLGY +DD + LKG VACE+S+++EL LTE+
Sbjct: 817 LNALKAERKSVQSTLHLEELNNRKRVLRRLGYLGNDDALVLKGSVACELSASDELILTEM 876
Query: 415 IFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKV 474
+ G+ + V + +LLSCFV+Q+K A K EL+ ++L + AR VAKV ECK+
Sbjct: 877 LLKGIFNTLDVAQTAALLSCFVFQDKCA-APKLATELQTCLSELHEQARNVAKVSNECKM 935
Query: 475 QIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAA 534
++ + +V+SF P +M+ VY W G+ F EI++ T VFEGS+IR +RRLEEVL+++I AA
Sbjct: 936 EVMEDKYVSSFNPGLMDVVYQWVNGATFSEIVKTTDVFEGSIIRTLRRLEEVLREMINAA 995
Query: 535 KSIGETELEAKFEEAVSKIKRDIVFAASLYL 565
K++ ELE KFE+A +KRDIVFAASLYL
Sbjct: 996 KALANKELEQKFEDARKNLKRDIVFAASLYL 1026
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/573 (36%), Positives = 343/573 (59%), Gaps = 25/573 (4%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
MPA+TV+FT +KF G+ FRW++SGEY+QMSGRAGRRGID +G+ I+++D ++ A+
Sbjct: 475 MPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRGIDTKGLSIVILDQSIDEQAARC 534
Query: 61 MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEE 120
++ G AD LNSAFHLSY M+LN +R EE SPE++L+ SFYQFQ ++P ++++ L+
Sbjct: 535 LMNGQADVLNSAFHLSYGMILNLMRIEEISPEDILKKSFYQFQNMESLPLIKEELMQLKN 594
Query: 121 ERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDN 180
E S+ I E ++K +++L Q + ++++ ++ P CLP+LQ GR + I+ G
Sbjct: 595 EETSINIPNETAVKEFHDLKLQLEKYGEEIQKVMTHPDNCLPYLQSGRLIQIKL--GGII 652
Query: 181 SPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCV-VSKDGAGKKTL 239
P WGV++ K E D N + + + + +L + +S + +
Sbjct: 653 FP----------WGVLVNVIK----REFDPNTREQVAPHETYVLDVLLPISSNSMSNHKV 698
Query: 240 K---IVPLKESGEPL--VVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARN 294
+VP + + PL +VSV ++ + +SS R+ MP++L +++ + +E +
Sbjct: 699 NPSILVPPRPNETPLYEIVSVLLTAVCNISSIRIYMPRELNSNESKLRAYRRVNEVIEEF 758
Query: 295 ASGLPLDPEANMGIRSSSYQKLVRRIEALE-SLFDKHEISKSPLIEQKLKVLHMKQELTA 353
LDP +M I SS+ +R++E LE LFD K + K L A
Sbjct: 759 KEIPYLDPLEHMHIESSTLSLSLRKLEILEPKLFDS-PYYKDSKHRAEYHEFRKKLNLRA 817
Query: 354 KIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTE 413
+IK I ++ ++ + ELK R+RVLRRLG+ T ++V+++KG+VACEI+S +EL L E
Sbjct: 818 QIKDISTKITNTEAIIQLRELKIRQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVE 877
Query: 414 LIFNGVLKDVKVEEMVSLLSCFVWQEKLQDAS-KPREELELLFTQLQDTARRVAKVQLEC 472
LIF G + EE+ + LSCFV+++K + ++ +E + ++ + + A+R+A V LE
Sbjct: 878 LIFQGFFNQMPPEEIAAALSCFVYEDKSEVSTLNLKEPFKKMYLTIIEAAKRIATVSLES 937
Query: 473 KVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLIL 532
K+Q + +++ F+PDIME V W G+ F EI ++ ++EGS++R RRL+E+L+QL
Sbjct: 938 KLQFNESDYLHQFKPDIMEPVSLWINGASFQEICIVSKLYEGSIVRTFRRLDELLKQLEH 997
Query: 533 AAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 565
AA +G EL+ K K+ RDI+F+ASLYL
Sbjct: 998 AAIVLGNNELKEKSVLTEQKLHRDIIFSASLYL 1030
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 170/598 (28%), Positives = 288/598 (48%), Gaps = 58/598 (9%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
MPA+TVVF ++RK DG FR + GEY+QM+GRAGRRG+D G IL+ ++ P A +
Sbjct: 671 MPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRV-PEMADL 729
Query: 61 --MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQA-------DHAIPDL 111
M+ G L S F L+Y M+LN +R + E++++ SF +F + + A+ +L
Sbjct: 730 HRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHEQALAEL 789
Query: 112 EKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVC 171
K+ LEE M + D L YY+ ++ + ++ + L L GR V
Sbjct: 790 TKRLGALEEP--DMTGQLVD-LPEYYSWGEELTETQHMIQRRIMESVNGLKSLSAGRVVV 846
Query: 172 IECTRGDDNSPSFSTEDHQVTWGVVIEFEKV-------------KGVYEDDANKKPEDSN 218
++ ++H GV+++ K + +D ++ P +
Sbjct: 847 VK------------NQEHHNALGVILQVSSNSTSRVFTTLVLCDKPLSQDPQDRGPATAE 894
Query: 219 --YTVNILTRCVVSKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARL-------- 268
Y +++ + +G T +V L +P ++ +++++++ ++
Sbjct: 895 VPYPDDLVGFKLFLPEGPCDHT--VVKL----QPGDMAAITTKVLRVNGEKILEDFSKRQ 948
Query: 269 -PMPKDLLPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRSSSYQKLVRRIEALESL 326
P K PL ++ + +G P LDP ++ ++ S + R LE L
Sbjct: 949 QPKFKKDPPLAAVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEEL 1008
Query: 327 FDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGY 386
+ SP + L + ++ +++ + R + S L E R VLR LGY
Sbjct: 1009 IQGAQCVHSPRFPAQYLKLRERMQIQKEMERL-RFLLSDQSLLLLPEYHQRVEVLRTLGY 1067
Query: 387 ATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASK 446
V+L G+VAC +SS EL LTEL+F+ L ++ EE+ +LLS V Q +
Sbjct: 1068 VDEAGTVKLAGRVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQ 1126
Query: 447 PREELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIM 506
L+ +++ A+R+ +VQ+ C + VE FV ++E VY WA+G F E+
Sbjct: 1127 LPNTLKQGIERVRAVAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELA 1186
Query: 507 EITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLY 564
++ EG ++R I+RL E+ + L AA+ +GE L AK E A + ++RDIVFAASLY
Sbjct: 1187 GLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1244
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 141/260 (54%), Gaps = 12/260 (4%)
Query: 317 VRRIEALESL----FDKHEISKSPLIEQKLKVLHM-----KQELTAKIKSIKRQMRSSTE 367
VR E E+ F ++++S +P+I + H + EL + I ++ + S
Sbjct: 955 VRDFEFCEAFEKRNFLQNKLSGNPIISTPNFLTHFALAYQEYELESNIDNLSSYI-SDQN 1013
Query: 368 LAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEE 427
L + + R +VL+ LGY ++ V LKG+VACEI+S EL LTELI L D EE
Sbjct: 1014 LELLPDYEQRIKVLQELGYIDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCEE 1073
Query: 428 MVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDVEG--FVNSF 485
++LLS FV+ EK + L+ + A +V ++Q +V EG F +
Sbjct: 1074 TIALLSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVNQIQEHYQVLYFNEGNDFESQP 1133
Query: 486 RPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAK 545
R +ME Y WA+G F I ++T V EGS++R I RL+EVL++ AA+ +G++ + K
Sbjct: 1134 RFGLMEVCYEWARGMSFNRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYTK 1193
Query: 546 FEEAVSKIKRDIVFAASLYL 565
EE + I+R+IVF SLY+
Sbjct: 1194 MEECQNLIRRNIVFCPSLYM 1213
Score = 95.9 bits (237), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
MPAK+VVF+ +K DG FR + GEY Q SGRAGRRG+D G I++ ++ P TA +
Sbjct: 655 MPAKSVVFSGTQKHDGRNFRDLLPGEYTQCSGRAGRRGLDVTGTVIILSRSEL-PDTASL 713
Query: 61 --MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVL 118
M+ G + L S F L+YNM+LN +R E E++++ SF + +P E++ K
Sbjct: 714 RHMIMGPSSKLISQFRLTYNMILNLLRVETLRIEDMIKRSFSENVNQTLVPQHEEKIKSF 773
Query: 119 EEERDSMVIEEED-SLKNYYNLLQQYKSLKKDVRDIVF 155
EE+ ++ E D LK + L +S K+ + + F
Sbjct: 774 EEKLSALKKEMSDVDLKEIKSCLLSSESFKEYTKKMHF 811
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 136/257 (52%), Gaps = 22/257 (8%)
Query: 326 LFDKHEISKSPLIEQKLKVLHMKQELTAKIKS--IKR------QMRSSTELAFKDELKAR 377
L D+ I + +K ++ Q + K K+ IK+ + S L+ + + R
Sbjct: 1036 LLDRTNIRDEIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSDQNLSLLPDYEKR 1095
Query: 378 KRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVW 437
VL+ + + V LKG+VACEI+S EL LTELI + L + EE+V+LLS FV+
Sbjct: 1096 LAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVY 1155
Query: 438 QEKLQDASKPREELELLFTQLQDTARRVAKV--QLECKVQI-------DVEGFVNSFRPD 488
+ K ++ EE ++ +L +R+ ++ ++ C D F++ R
Sbjct: 1156 EGKTRE-----EEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDRKRFA 1210
Query: 489 IMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEE 548
+M VY WA+G F EIME++P EG+++R I L+E+ +++ A+ IG + L K
Sbjct: 1211 MMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHMKMSR 1270
Query: 549 AVSKIKRDIVFAASLYL 565
A IKRDIVFAASLYL
Sbjct: 1271 AQELIKRDIVFAASLYL 1287
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 103/178 (57%), Gaps = 7/178 (3%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMV-DDKMEPSTAK 59
+P +TV+F+++RK DG+ R ++ GE+ QM+GRAGRRG+D G I+M + + +T K
Sbjct: 731 LPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFK 790
Query: 60 MMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLE 119
+ G L S F L+YNM+LN +R E E +++ SF + + P+ EKQ KVL+
Sbjct: 791 EVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQ 850
Query: 120 EERDSMVIEE----EDSLKNYYNLLQQYKSLKKDV-RDIVFSPKYCLPFLQPGRFVCI 172
EE ++ + ++ ++ + L+ YK ++ +++V SP L L+ GR V
Sbjct: 851 EELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEMVKSPS-ILHILKEGRLVAF 907
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 5/125 (4%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
MPA+TVV + KF+G++ ++ GEY Q++GRAGRRGID G +++ ++EPS
Sbjct: 379 MPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAG 438
Query: 61 MLKGSADSLNSAFHLSYNMLLNQI-RCEEGSPENLLRNSFYQFQADHAIPDL----EKQA 115
+ L S+F SYNM +N + R LL SF Q+QAD ++ L E+
Sbjct: 439 LASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQYQADRSVVGLVRGIERGN 498
Query: 116 KVLEE 120
++L E
Sbjct: 499 RILGE 503
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILM---VDDKMEPST 57
MPA+TVV + KF+G + ++ GEY Q++GRAGRRGID G +++ +D PS
Sbjct: 382 MPARTVVLERLVKFNGKQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPSEDTSGPSA 441
Query: 58 AKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPEN---LLRNSFYQFQADHAIPDL 111
+ L S+F SYNM +N + SPE LL SF Q+QAD ++ L
Sbjct: 442 VAGLASARTFPLRSSFVPSYNMTINLVHWM--SPERAHALLEQSFAQYQADRSVVGL 496
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPS--TA 58
MPA+T V +++ K G++ + E QM+GRAGRRGIDE+G +L V E +
Sbjct: 537 MPARTAVISSLSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVL-VQTAFEGAEECC 595
Query: 59 KMMLKGSADSLNSAFHLSYNMLLNQI 84
K++ G L S F SY M+LN +
Sbjct: 596 KLVFAG-VKPLVSQFTASYGMVLNLV 620
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 26/148 (17%)
Query: 397 GKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFV--------WQEKLQDASKPR 448
G+ A I EL L ++ N L D+K ++ + + V W++ +P
Sbjct: 1005 GETAAAIRGENELWLAMVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDN-NYIYEPS 1063
Query: 449 EELELLFTQLQDTARRVAKVQ------LECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKF 502
+ + + L+D + K+Q + C + + G V AWA G +
Sbjct: 1064 DTVVDMVNFLEDQRSSLIKLQEKHEVMIPCCLDVQFSGMVE-----------AWASGLSW 1112
Query: 503 YEIMEITPVFEGSLIRAIRRLEEVLQQL 530
E+M + EG L R +RR ++L Q+
Sbjct: 1113 KEMMMECAMDEGDLARLLRRTIDLLAQI 1140
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
+PA V+ + ++ + + S + +QM GRAGR + G ++M D KM+ T +
Sbjct: 460 LPAYLVIIKGTKSWNSSEIQEYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMK-QTYEN 518
Query: 61 MLKGSADSLNSAFHLSYNMLLNQIRCEEG--------SPENLLRNSFY 100
++ G+ D L S+ HL+ L+ + E + N LRN+F+
Sbjct: 519 LIHGT-DVLESSLHLN---LIEHLAAETSLETVYSIETAVNWLRNTFF 562
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 1 MPAKTVVFTNVRKFDGDKFRW---ISSGEYIQMSGRAGRRGIDERGICILMVDDKME 54
+PA+ VV ++ +F+ + IS+ EY QMSGRAGR G D G I++V K+E
Sbjct: 350 LPARAVVIGDIYRFNRKIVGFTEMISTMEYRQMSGRAGRPGYDNHGEAIILVRSKVE 406
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 22/139 (15%)
Query: 1 MPAKTVVFTNVRKFDGDKFRW---ISSGEYIQMSGRAGRRGIDERGICILMVDDK----- 52
+PA+TV+ ++ +F+ + I EY QMSGRAGR G D+ G I++V DK
Sbjct: 347 LPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQIGESIIVVRDKEDVDR 406
Query: 53 ---------MEPSTAKMMLKGSADSLNSAFH--LSYNMLLNQIRCEEGSPENLLRNSFYQ 101
+EP +K+ GS + + LS L++ + E + E+LL S
Sbjct: 407 VFKKYILSDVEPIESKL---GSERAFYTFLLGILSAEGSLSEKQLEAFAYESLLAKSVVD 463
Query: 102 FQADHAIPDLEKQAKVLEE 120
D AI L + + + EE
Sbjct: 464 VYFDRAIRWLSEHSFIREE 482
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 1 MPAKTVVFTNVRKFD-GDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKME 54
+PA+ V+ R+++ G F I EY QM+GRAGR G+D G I++V K E
Sbjct: 349 LPARRVIVNEYRRYEPGYGFIEIPVMEYKQMAGRAGRPGLDPYGEAIIIVSSKDE 403
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
+PA+ V+ ++ ++ D ++++ E QM GRAGR G D+ GI ++ V + AK
Sbjct: 327 LPARLVIVRDITRWGSDGISYLTNMEIKQMIGRAGRPGYDQYGIGLIYVSSQSSYEAAKD 386
Query: 61 ML 62
L
Sbjct: 387 YL 388
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMV---DDKMEPST 57
+P++TVV + ++ R I +Y QMSGRAGR D+ G L+ D+ M+
Sbjct: 332 LPSRTVVIRDYTRWTSQGPRRIPVFDYEQMSGRAGRPQYDDAGYSYLIARSHDEAMD--L 389
Query: 58 AKMMLKGSADSLNSAFHLSYNMLLNQIRCE-----EGSPENL---LRNSFYQFQ 103
+ ++G + S + + L QI + G+ E L RN+FY +Q
Sbjct: 390 EEYYIRGEVERTTSRIIENRDALYRQIIAQVASGLSGTTEELADFFRNTFYGYQ 443
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSG--EYIQMSGRAGRRGIDERGICILMVD 50
+PA TV+ + ++ +K RW G + +QM GRAGR D+RG IL+ +
Sbjct: 814 LPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITN 865
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 24/149 (16%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICIL------------- 47
+PA+ V+ +V ++ ++S+ E QM GRAGR G D+ GI I+
Sbjct: 327 LPARLVIVKDVTRYGDLGITYLSNMEVKQMIGRAGRPGYDQYGIGIIYAASANSYQVVKE 386
Query: 48 MVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQ-ADH 106
+ ++ EP + + K N+ ++ + +Q+ EE R++FY Q +
Sbjct: 387 YISEEPEPVDSYIG-KPEKVRFNTLAAIAMGLATSQVEMEE-----FYRSTFYYAQNGED 440
Query: 107 AIPD-LEKQAKVLEEERDSMVIEEEDSLK 134
IP+ + + K L+E + I+E+DSL+
Sbjct: 441 EIPNRINESIKFLKE---NGFIKEKDSLR 466
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 1 MPAKTVVFTNVRKFDGDKFRW---ISSGEYIQMSGRAGRRGIDERGICILMVDDKME 54
+PA+ VV ++ +++ + I +Y QMSGRAGR G DE G +++V +K E
Sbjct: 349 LPARAVVIGDIYRYNRKVVGYMDLIPVMDYKQMSGRAGRPGFDENGEAVVVVRNKRE 405
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 40.8 bits (94), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWI--SSGEYIQMSGRAGRRGIDERGICILMVD 50
+PA TV+ + ++ +K RW+ S+ + +QM GRAGR D +G IL+ +
Sbjct: 821 LPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITN 872
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 39.7 bits (91), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVD 50
+PA+ VV + +++ I EY QM+GRAGR G+DE G I++ +
Sbjct: 347 LPARRVVIDSYYRYEAGFREPIRVAEYKQMAGRAGRPGLDEFGEAIIVAE 396
>sp|Q09475|YP93_CAEEL Uncharacterized helicase C28H8.3 OS=Caenorhabditis elegans GN=C28H8.3
PE=3 SV=2
Length = 1714
Score = 38.9 bits (89), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILM 48
MP KTV+F G ++ Y QMSGRAGRRG D G I M
Sbjct: 1321 MPCKTVMF-------GVDTLQLTPLLYRQMSGRAGRRGFDHSGNVIFM 1361
>sp|Q914M3|Y007_SIFVH Putative helicase 7 OS=Sulfolobus islandicus filamentous virus
(isolate Iceland/Hveragerdi) GN=SIFV0007 PE=4 SV=1
Length = 601
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 1 MPAKTVVFTNVR-------KFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKM 53
P VVF +++ +F G ++ I+ E+ Q+ GRAGR G DE G+CI+ D
Sbjct: 287 FPFYAVVFDDLKLPIIEYGRFTG--WKQITPIEFDQICGRAGRPGYDEEGLCIIEATDIR 344
Query: 54 EPSTAKMMLKGSADSLNSAFHLSYNMLLNQI 84
+ K ++ + H+ + LL I
Sbjct: 345 QAEKLKRTYFNTSYGTITGHHVLEDFLLALI 375
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSG--EYIQMSGRAGRRGIDERGICILMV 49
+PA TV+ + + +K RW G + +QM GRAGR D +G IL+
Sbjct: 821 LPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 871
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 MPAKTVVFTNVRKFDGDKFRW-ISSGEYIQMSGRAGRRGIDERGICILMVDDKME 54
+PA+ VV + +FD R I EY QM+GRAGR G+D G +L+ K E
Sbjct: 343 LPARRVVVADYERFDPALGREEIPVLEYRQMAGRAGRPGLDPYGEAVLVARSKGE 397
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 17/111 (15%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISS--GEYIQMSGRAGRRGIDERGICILMVDDK------ 52
+PA V+ FDG R++ + +QM GRAGR D+ G ++MV +
Sbjct: 1654 LPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQFYK 1713
Query: 53 ---MEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFY 100
+P + LK D L+ HL+ ++ I+ ++G+ N L N+F+
Sbjct: 1714 KFLYDPFPVESHLK---DFLHD--HLNAEIVSGTIQSKQGAI-NYLVNTFF 1758
>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1401 PE=3 SV=1
Length = 808
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVD 50
PA TV+ ++ D W++ E+ QM GRAGR+G+ E G L+V+
Sbjct: 497 FPASTVILESL-AMGAD---WLNPAEFQQMCGRAGRKGMHEIGKVYLLVE 542
>sp|Q8IY21|DDX60_HUMAN Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens GN=DDX60
PE=1 SV=3
Length = 1712
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
MP K+VVF + + + Y QMSGRAGRRG D G D P K
Sbjct: 1300 MPCKSVVFAQNSVY-------LDALNYRQMSGRAGRRGQDLMGDVYFF--DIPFPKIGK- 1349
Query: 61 MLKGSADSLNSAFHLSYNMLL 81
++K + L F LS ++L
Sbjct: 1350 LIKSNVPELRGHFPLSITLVL 1370
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
norvegicus GN=Ascc3 PE=2 SV=1
Length = 2197
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISS--GEYIQMSGRAGRRGIDERGICILMVDD 51
PA V+ +DG R++ + +QM GRAGR D++G +++V D
Sbjct: 1655 FPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHD 1707
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISS--GEYIQMSGRAGRRGIDERGICILMVDD 51
PA V+ +DG R++ + +QM GRAGR D++G +++V D
Sbjct: 1655 FPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHD 1707
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISS--GEYIQMSGRAGRRGIDERGICILMVDD 51
PA V+ +DG R++ + +QM GRAGR D++G +++V D
Sbjct: 1664 FPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHD 1716
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISS--GEYIQMSGRAGRRGIDERGICILMVDD 51
PA V+ +DG R++ + +QM GRAGR D++G +++V D
Sbjct: 1656 FPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHD 1708
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISS--GEYIQMSGRAGRRGIDERGICILMVDD 51
PA V+ +DG R++ + +QM GRAGR D++G +++V D
Sbjct: 1655 FPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHD 1707
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 37.4 bits (85), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 1 MPAKTVVFTNVRKFDG-DKFRWISSGEYIQMSGRAGRRGIDERGICILMV 49
+PA+ V+ N R++ D + I EY QM+GRAGR +D G +L+
Sbjct: 345 LPARRVIIRNYRRYSSEDGMQPIPVLEYKQMAGRAGRPRLDPYGEAVLVA 394
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISS--GEYIQMSGRAGRRGIDERGICILMVDD 51
PA V+ +DG R++ + +QM GRAGR D++G +++V D
Sbjct: 1217 FPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHD 1269
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 36.6 bits (83), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 1 MPAKTVVFTNVRKFDGD-KFRWISSGEYIQMSGRAGRRGIDERGICILM 48
+PA+ V+ + R+FD + + I EY QM+GRAGR +D G +L+
Sbjct: 345 LPARRVIIRSYRRFDSNFGMQPIPVLEYKQMAGRAGRPHLDPYGESVLL 393
>sp|Q5H9U9|DDX6L_HUMAN Probable ATP-dependent RNA helicase DDX60-like OS=Homo sapiens
GN=DDX60L PE=2 SV=2
Length = 1706
Score = 36.2 bits (82), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
MP K+VVF + + + Y QMSGRAGRRG D G D P K
Sbjct: 1284 MPCKSVVFAQDSVY-------LDALNYRQMSGRAGRRGQDLLGNVYFF--DIPLPKI-KR 1333
Query: 61 MLKGSADSLNSAFHLSYNMLL 81
+L S L F LS ++L
Sbjct: 1334 LLASSVPELRGQFPLSITLVL 1354
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 36.2 bits (82), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 1 MPAKTVVFTNVRKFD-GDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKME-PSTA 58
+PA+ V+ + +F G+ + I EY QM+GRAGR +D G +L+ + + P
Sbjct: 338 LPARRVIIRDYLRFSAGEGMQPIPVSEYRQMAGRAGRPRLDPYGEAVLIAKEAEQVPELF 397
Query: 59 KMMLKGSADSLNS 71
++ ++ A+ ++S
Sbjct: 398 EVYIEAEAEDVHS 410
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1
PE=2 SV=2
Length = 1435
Score = 35.8 bits (81), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
+PA VV + + G F S + +QM GRAGR D ++M ++ +
Sbjct: 622 LPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMT--RLSTRDKYI 679
Query: 61 MLKGSADSLNSAFH 74
+ D++ S+ H
Sbjct: 680 QMLACRDTVESSLH 693
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 1 MPAKTVVFTNVRKFDGDK-FRWISSGEYIQMSGRAGRRGIDERGICILMV 49
+PA+ V+ + R++ D + I EY QM+GRAGR +D G +L+
Sbjct: 345 LPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPRLDPYGEAVLLA 394
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 1 MPAKTVVFTNVRKFDGDK-FRWISSGEYIQMSGRAGRRGIDERGICILMV 49
+PA+ V+ + R++ D + I EY QM+GRAGR +D G +L+
Sbjct: 345 LPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPRLDPYGEAVLLA 394
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDK 52
++ +Y QM GRAGR GID G IL++ +K
Sbjct: 654 FLKRNQYKQMVGRAGRAGIDTAGESILLLQEK 685
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 17/130 (13%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
+P + + ++ +F R+I E Q GRAGR G+D G I++ + + A
Sbjct: 844 LPCRRAIVKDLTRFTNKGMRYIPIMEIQQCIGRAGRPGLDPYGEGIIVAKNDRDYLRAYQ 903
Query: 61 MLKGSADSLNSAFHLSYNMLL----------NQIRCEEGSPENLLRNSFYQFQADHAIPD 110
L + + S LS +L +IR +E E +RN+FY H +
Sbjct: 904 ALTQKPEPIYSK--LSNQAVLRTQLLGLIATGEIR-DEYDLEWFIRNTFYA----HQYGN 956
Query: 111 LEKQAKVLEE 120
L + AK + E
Sbjct: 957 LREVAKNINE 966
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
+PA V+ + + F+ S + +QM GRAGR D ++M + M
Sbjct: 491 LPAHLVIVKSTMHYVSGMFQEYSETDILQMIGRAGRPQFDSTATAVIMTRLSTKEKYVHM 550
Query: 61 MLKGSADSLNSAFH 74
+ AD++ S+ H
Sbjct: 551 L--DGADTIESSLH 562
>sp|Q9DA15|THEGL_MOUSE Testicular haploid expressed gene protein-like OS=Mus musculus
GN=Thegl PE=2 SV=1
Length = 459
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 29/188 (15%)
Query: 346 HMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISS 405
H E++A +S + A D L++RK + TSD L G + S
Sbjct: 69 HKSHEVSASFRSHNSSDPPQSRKA-SDSLRSRKGIEPLEPRKTSDSFRSLMGSDPLQSSE 127
Query: 406 AEELTLTELIFNGVL--------KDVKVEEMVSLLS----------CFVWQEKLQDASKP 447
+E +L N V+ + + ++ SL + CF ++++QD SKP
Sbjct: 128 RQEDGKDDLFPNAVIMTSPSLIARYLPRLQLASLRAHPVTRDLVKKCFYSRKRVQDLSKP 187
Query: 448 REEL----ELLFTQLQDTARRVAKVQLECKVQIDVEGFVNS------FRPDIMEAVYAWA 497
+++ LF QD R V++ L+ K+ +E + P+ ++ Y+
Sbjct: 188 KKQWGTPDRRLFWGNQDPIRPVSEAALKAKLSKRIEDLAQPRLVSRHYVPNRIQYYYSCG 247
Query: 498 KGSKFYEI 505
+ S +EI
Sbjct: 248 RESVIWEI 255
>sp|Q6GR25|PPTC7_XENLA Protein phosphatase PTC7 homolog OS=Xenopus laevis GN=pptc7 PE=2
SV=1
Length = 297
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 90 SPENLLRNSFYQFQADHAIPD--LEKQAKVLEEERDSMVIEEEDSLKN--YYNLLQQYKS 145
SP+ NSF D + D L + + D M+++E LKN Y ++ Q +S
Sbjct: 194 SPDAADSNSF-----DVQLGDIILTATDGLFDNMPDYMILQELKKLKNTNYESIQQTARS 248
Query: 146 LKKDVRDIVFSPKYCLPFLQPGRFVC 171
+ + D+ + P Y PF Q F C
Sbjct: 249 IAEQAHDLAYDPNYMSPFAQ---FAC 271
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDK 52
++ +Y QM GRAGR GID G IL++ +K
Sbjct: 695 FLKRNQYKQMIGRAGRAGIDTIGESILILQEK 726
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,946,057
Number of Sequences: 539616
Number of extensions: 8291410
Number of successful extensions: 28170
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 28026
Number of HSP's gapped (non-prelim): 264
length of query: 565
length of database: 191,569,459
effective HSP length: 123
effective length of query: 442
effective length of database: 125,196,691
effective search space: 55336937422
effective search space used: 55336937422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)