Query 008449
Match_columns 565
No_of_seqs 205 out of 1403
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 03:49:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l9o_A ATP-dependent RNA helic 100.0 5E-112 2E-116 1004.8 39.8 553 1-565 546-1108(1108)
2 2xgj_A ATP-dependent RNA helic 100.0 1E-109 4E-114 977.2 55.8 553 1-565 448-1010(1010)
3 4a4z_A Antiviral helicase SKI2 100.0 1E-104 3E-109 934.8 46.8 534 1-565 441-997 (997)
4 4f92_B U5 small nuclear ribonu 99.3 1.5E-12 5.3E-17 160.0 10.4 102 1-104 1255-1363(1724)
5 4f92_B U5 small nuclear ribonu 99.3 9.7E-12 3.3E-16 153.0 10.9 102 1-104 420-528 (1724)
6 2zj8_A DNA helicase, putative 99.1 2.8E-10 9.7E-15 129.7 14.0 104 1-105 336-447 (720)
7 2p6r_A Afuhel308 helicase; pro 99.0 4E-10 1.4E-14 128.0 11.1 103 1-105 338-448 (702)
8 2va8_A SSO2462, SKI2-type heli 99.0 4.4E-10 1.5E-14 127.8 8.3 103 1-103 354-467 (715)
9 3rc3_A ATP-dependent RNA helic 98.2 1.1E-06 3.8E-11 99.2 6.2 74 1-76 388-468 (677)
10 2rb4_A ATP-dependent RNA helic 96.6 0.0022 7.5E-08 59.3 5.6 29 22-52 119-147 (175)
11 2hjv_A ATP-dependent RNA helic 96.5 0.003 1E-07 57.6 6.0 30 21-52 113-142 (163)
12 1fuk_A Eukaryotic initiation f 96.4 0.0012 4.1E-08 60.4 2.5 50 21-73 108-160 (165)
13 3oiy_A Reverse gyrase helicase 96.2 0.0029 1E-07 66.3 4.2 40 4-50 322-363 (414)
14 2jgn_A DBX, DDX3, ATP-dependen 96.0 0.0059 2E-07 57.1 5.2 30 21-52 124-153 (185)
15 3pey_A ATP-dependent RNA helic 95.9 0.0068 2.3E-07 62.2 5.4 45 3-52 312-356 (395)
16 2p6n_A ATP-dependent RNA helic 95.9 0.011 3.8E-07 55.6 6.4 30 21-52 132-161 (191)
17 1t5i_A C_terminal domain of A 95.8 0.0034 1.2E-07 58.0 2.6 30 21-52 109-138 (172)
18 1xti_A Probable ATP-dependent 95.8 0.0061 2.1E-07 62.8 4.6 29 22-52 329-357 (391)
19 3eaq_A Heat resistant RNA depe 95.7 0.011 3.9E-07 56.4 5.6 30 21-52 109-138 (212)
20 1yks_A Genome polyprotein [con 95.6 0.012 3.9E-07 62.9 6.1 48 1-49 239-296 (440)
21 3i5x_A ATP-dependent RNA helic 95.6 0.022 7.4E-07 62.2 8.1 38 22-62 421-458 (563)
22 2z83_A Helicase/nucleoside tri 95.5 0.014 4.8E-07 62.5 6.2 32 20-52 282-313 (459)
23 1hv8_A Putative ATP-dependent 95.4 0.019 6.4E-07 58.2 6.3 36 21-59 316-351 (367)
24 1s2m_A Putative ATP-dependent 95.3 0.016 5.4E-07 60.0 5.6 38 21-61 336-373 (400)
25 2xau_A PRE-mRNA-splicing facto 95.3 0.026 8.8E-07 64.6 7.7 81 1-91 385-477 (773)
26 3fho_A ATP-dependent RNA helic 95.1 0.016 5.3E-07 62.9 5.1 47 22-70 442-491 (508)
27 2i4i_A ATP-dependent RNA helic 94.8 0.021 7.2E-07 59.3 4.7 30 21-52 354-383 (417)
28 2jlq_A Serine protease subunit 94.6 0.027 9.3E-07 60.1 5.2 30 20-50 280-309 (451)
29 3eiq_A Eukaryotic initiation f 94.6 0.019 6.6E-07 59.5 3.7 29 22-52 359-387 (414)
30 2yjt_D ATP-dependent RNA helic 93.6 0.0064 2.2E-07 55.8 0.0 30 21-52 108-137 (170)
31 2j0s_A ATP-dependent RNA helic 94.5 0.024 8.3E-07 58.8 4.5 45 22-69 355-402 (410)
32 1oyw_A RECQ helicase, ATP-depe 94.4 0.032 1.1E-06 60.8 5.2 41 21-64 314-354 (523)
33 3i32_A Heat resistant RNA depe 94.3 0.039 1.3E-06 55.9 5.3 29 22-52 107-135 (300)
34 3fht_A ATP-dependent RNA helic 94.3 0.036 1.2E-06 57.3 5.2 29 22-52 351-379 (412)
35 2db3_A ATP-dependent RNA helic 94.3 0.052 1.8E-06 57.4 6.4 29 22-52 379-407 (434)
36 3sqw_A ATP-dependent RNA helic 94.0 0.04 1.4E-06 60.5 5.1 38 22-62 370-407 (579)
37 2whx_A Serine protease/ntpase/ 93.9 0.059 2E-06 60.0 6.2 49 1-50 417-476 (618)
38 2z0m_A 337AA long hypothetical 93.8 0.041 1.4E-06 55.0 4.3 35 22-60 295-329 (337)
39 2v6i_A RNA helicase; membrane, 93.3 0.069 2.4E-06 56.6 5.2 49 1-50 233-289 (431)
40 1c4o_A DNA nucleotide excision 93.1 0.093 3.2E-06 59.0 6.0 42 4-52 509-550 (664)
41 2v1x_A ATP-dependent DNA helic 93.0 0.067 2.3E-06 59.3 4.6 39 22-63 346-384 (591)
42 1fuu_A Yeast initiation factor 92.9 0.019 6.5E-07 59.0 0.0 29 22-52 338-366 (394)
43 3fmp_B ATP-dependent RNA helic 92.8 0.019 6.6E-07 61.3 0.0 29 22-52 418-446 (479)
44 4ddu_A Reverse gyrase; topoiso 92.3 0.099 3.4E-06 62.1 5.1 38 14-51 450-491 (1104)
45 3o8b_A HCV NS3 protease/helica 92.3 0.13 4.3E-06 57.8 5.7 48 1-52 455-514 (666)
46 2wv9_A Flavivirin protease NS2 92.2 0.14 4.8E-06 57.6 5.9 48 1-49 472-530 (673)
47 2d7d_A Uvrabc system protein B 91.7 0.19 6.4E-06 56.5 6.3 42 4-52 515-556 (661)
48 1gm5_A RECG; helicase, replica 91.2 0.14 4.8E-06 58.6 4.6 28 22-51 669-696 (780)
49 2va8_A SSO2462, SKI2-type heli 91.0 0.91 3.1E-05 50.9 11.0 171 373-557 472-652 (715)
50 2fwr_A DNA repair protein RAD2 89.9 0.22 7.7E-06 52.7 4.5 31 22-52 423-454 (472)
51 1gku_B Reverse gyrase, TOP-RG; 88.6 0.32 1.1E-05 57.5 4.9 30 22-51 424-455 (1054)
52 1wp9_A ATP-dependent RNA helic 88.2 0.27 9.1E-06 51.2 3.6 28 22-52 448-475 (494)
53 2eyq_A TRCF, transcription-rep 87.2 0.54 1.9E-05 56.1 5.8 40 2-51 881-921 (1151)
54 3h1t_A Type I site-specific re 86.2 0.4 1.4E-05 52.5 3.7 19 22-40 528-546 (590)
55 2zj8_A DNA helicase, putative 85.9 4 0.00014 45.8 11.8 173 371-556 453-640 (720)
56 2p6r_A Afuhel308 helicase; pro 85.8 6.7 0.00023 43.8 13.5 154 371-540 452-614 (702)
57 1z63_A Helicase of the SNF2/RA 83.0 0.92 3.1E-05 48.3 4.7 46 21-66 422-467 (500)
58 2oca_A DAR protein, ATP-depend 82.0 0.45 1.5E-05 51.0 1.7 30 3-41 417-446 (510)
59 3dmq_A RNA polymerase-associat 81.6 1.4 4.8E-05 51.5 5.8 43 21-63 584-626 (968)
60 4gl2_A Interferon-induced heli 81.5 0.82 2.8E-05 50.9 3.7 27 21-51 492-518 (699)
61 4dyq_A Gene 1 protein; GP1, oc 79.6 3.1 0.00011 36.8 6.2 66 484-550 12-79 (140)
62 4a2p_A RIG-I, retinoic acid in 79.6 0.93 3.2E-05 48.5 3.2 28 21-52 481-508 (556)
63 1z5z_A Helicase of the SNF2/RA 76.4 1.2 4E-05 44.1 2.6 31 21-51 193-223 (271)
64 2w00_A HSDR, R.ECOR124I; ATP-b 75.9 4.6 0.00016 47.5 7.8 109 20-151 675-793 (1038)
65 3i4u_A ATP-dependent RNA helic 74.0 26 0.00088 34.4 11.7 137 373-538 19-156 (270)
66 3jux_A Protein translocase sub 73.3 16 0.00054 41.4 10.8 31 20-52 557-587 (822)
67 4a2q_A RIG-I, retinoic acid in 71.6 1.8 6E-05 49.4 2.9 28 21-52 722-749 (797)
68 3tbk_A RIG-I helicase domain; 71.5 0.76 2.6E-05 49.1 -0.3 27 22-52 481-507 (555)
69 2o8x_A Probable RNA polymerase 67.7 5.5 0.00019 29.8 4.1 53 483-535 14-67 (70)
70 1z3i_X Similar to RAD54-like; 67.6 6.1 0.00021 43.8 6.1 32 21-52 497-528 (644)
71 2ykg_A Probable ATP-dependent 63.8 1.9 6.4E-05 47.9 0.9 27 22-52 490-516 (696)
72 3mwy_W Chromo domain-containin 60.9 8.8 0.0003 43.7 5.9 41 3-52 644-684 (800)
73 1tc3_C Protein (TC3 transposas 60.5 5.8 0.0002 27.0 2.8 35 490-524 12-46 (51)
74 1nkt_A Preprotein translocase 59.4 40 0.0014 38.8 10.7 31 20-52 587-617 (922)
75 1xsv_A Hypothetical UPF0122 pr 57.8 30 0.001 29.1 7.3 68 484-554 25-93 (113)
76 4a2w_A RIG-I, retinoic acid in 57.3 3.9 0.00013 47.5 2.1 28 21-52 722-749 (936)
77 2elh_A CG11849-PA, LD40883P; s 56.4 1.1 3.9E-05 36.1 -1.9 49 485-533 23-72 (87)
78 3idw_A Actin cytoskeleton-regu 49.5 9.2 0.00031 29.9 2.4 24 504-527 42-65 (72)
79 1tf5_A Preprotein translocase 49.4 8.3 0.00028 44.1 3.0 31 20-52 515-545 (844)
80 3hug_A RNA polymerase sigma fa 46.9 20 0.00069 28.6 4.3 49 484-532 37-86 (92)
81 1fse_A GERE; helix-turn-helix 44.7 23 0.00077 26.6 4.1 46 483-528 10-55 (74)
82 2xau_A PRE-mRNA-splicing facto 44.2 20 0.0007 40.6 5.3 61 372-433 489-550 (773)
83 3jw4_A Transcriptional regulat 43.7 38 0.0013 28.9 6.0 53 465-525 30-83 (148)
84 2fsf_A Preprotein translocase 43.3 12 0.0004 42.9 3.0 31 20-52 553-583 (853)
85 1je8_A Nitrate/nitrite respons 42.7 21 0.00071 28.0 3.6 48 481-528 18-65 (82)
86 1zhc_A Hypothetical protein HP 42.2 61 0.0021 25.4 6.3 60 304-364 10-69 (76)
87 3bdd_A Regulatory protein MARR 41.4 44 0.0015 28.1 5.9 63 454-525 8-71 (142)
88 1jko_C HIN recombinase, DNA-in 39.1 13 0.00045 25.5 1.7 34 490-523 12-45 (52)
89 2jpc_A SSRB; DNA binding prote 39.1 28 0.00095 25.1 3.7 37 491-527 5-41 (61)
90 3ech_A MEXR, multidrug resista 38.4 1.1E+02 0.0037 25.7 8.1 37 488-525 41-77 (142)
91 1s7o_A Hypothetical UPF0122 pr 38.2 77 0.0026 26.5 6.8 50 484-533 22-72 (113)
92 3g3z_A NMB1585, transcriptiona 36.2 57 0.002 27.6 5.9 52 465-525 20-71 (145)
93 2hr3_A Probable transcriptiona 35.2 72 0.0025 26.9 6.3 38 488-525 39-76 (147)
94 1x3u_A Transcriptional regulat 33.5 21 0.00072 27.2 2.3 44 485-528 17-60 (79)
95 3iz5_N 60S ribosomal protein L 33.2 31 0.0011 30.3 3.5 29 161-201 4-32 (134)
96 3fm5_A Transcriptional regulat 33.2 54 0.0018 28.0 5.2 39 487-525 42-80 (150)
97 3eco_A MEPR; mutlidrug efflux 32.9 30 0.001 29.2 3.4 39 487-525 34-73 (139)
98 1cmk_I CAMP-dependent protein 32.8 11 0.00038 23.4 0.4 10 30-39 8-17 (26)
99 3u2r_A Regulatory protein MARR 32.7 78 0.0027 27.7 6.3 39 487-525 49-88 (168)
100 3mzy_A RNA polymerase sigma-H 32.5 36 0.0012 29.2 4.0 48 485-532 110-157 (164)
101 3c57_A Two component transcrip 31.8 43 0.0015 26.9 4.0 46 483-528 26-71 (95)
102 3nqo_A MARR-family transcripti 30.9 69 0.0024 28.9 5.7 68 452-525 15-83 (189)
103 3bbz_A P protein, phosphoprote 30.8 29 0.00099 25.0 2.3 33 527-561 7-48 (49)
104 2rnj_A Response regulator prot 30.7 33 0.0011 27.3 3.1 47 482-528 27-73 (91)
105 3izc_N 60S ribosomal protein R 30.5 37 0.0013 29.9 3.5 30 160-201 11-40 (138)
106 2gxg_A 146AA long hypothetical 29.8 64 0.0022 27.2 5.0 37 487-525 40-76 (146)
107 3bro_A Transcriptional regulat 29.5 55 0.0019 27.4 4.5 37 489-525 39-76 (141)
108 2bv6_A MGRA, HTH-type transcri 29.5 79 0.0027 26.5 5.6 37 489-526 42-78 (142)
109 4b8x_A SCO5413, possible MARR- 29.2 45 0.0016 28.8 4.0 53 465-525 24-77 (147)
110 3deu_A Transcriptional regulat 28.9 26 0.00089 31.1 2.4 39 487-525 56-94 (166)
111 1ku3_A Sigma factor SIGA; heli 28.4 76 0.0026 23.8 4.7 47 482-528 8-59 (73)
112 1sfx_A Conserved hypothetical 28.4 66 0.0022 25.4 4.6 39 487-526 23-61 (109)
113 3bja_A Transcriptional regulat 28.2 90 0.0031 25.9 5.7 37 488-525 37-73 (139)
114 2a61_A Transcriptional regulat 27.5 47 0.0016 28.0 3.7 38 487-525 36-73 (145)
115 3oop_A LIN2960 protein; protei 27.3 34 0.0012 29.0 2.7 38 487-525 40-77 (143)
116 4aik_A Transcriptional regulat 27.0 90 0.0031 27.1 5.6 61 371-435 60-130 (151)
117 2p7v_B Sigma-70, RNA polymeras 26.7 53 0.0018 24.3 3.5 47 483-529 4-55 (68)
118 1ku9_A Hypothetical protein MJ 26.2 52 0.0018 27.7 3.8 53 465-525 15-67 (152)
119 2frh_A SARA, staphylococcal ac 25.7 56 0.0019 27.4 3.8 53 465-525 26-79 (127)
120 2fbk_A Transcriptional regulat 25.4 74 0.0025 28.3 4.8 40 487-526 72-113 (181)
121 2rdp_A Putative transcriptiona 25.3 59 0.002 27.6 4.0 37 488-525 46-82 (150)
122 3s2w_A Transcriptional regulat 25.1 1.7E+02 0.0058 25.0 7.1 69 448-525 21-90 (159)
123 3sja_C Golgi to ER traffic pro 25.0 2E+02 0.0068 21.9 6.2 42 109-152 9-50 (65)
124 3j21_5 50S ribosomal protein L 24.8 46 0.0016 26.6 2.8 26 162-199 2-27 (83)
125 1deb_A APC protein, adenomatou 24.7 1.5E+02 0.005 21.4 5.0 35 351-385 15-51 (54)
126 1pdn_C Protein (PRD paired); p 24.6 61 0.0021 26.5 3.8 36 490-525 24-59 (128)
127 2fa5_A Transcriptional regulat 24.3 85 0.0029 27.0 4.9 38 488-526 53-90 (162)
128 4hbl_A Transcriptional regulat 24.0 61 0.0021 27.7 3.8 38 487-525 44-81 (149)
129 1p4x_A Staphylococcal accessor 23.8 1.7E+02 0.0058 28.0 7.3 123 373-526 66-201 (250)
130 3f3x_A Transcriptional regulat 23.3 86 0.0029 26.4 4.6 37 488-526 41-77 (144)
131 1jgs_A Multiple antibiotic res 23.1 70 0.0024 26.7 4.0 37 489-526 39-75 (138)
132 2fbh_A Transcriptional regulat 23.0 78 0.0027 26.5 4.3 38 488-525 41-78 (146)
133 1p4w_A RCSB; solution structur 22.9 68 0.0023 26.2 3.7 45 483-527 33-77 (99)
134 1lj9_A Transcriptional regulat 22.8 66 0.0023 27.1 3.8 37 488-525 33-69 (144)
135 3kp7_A Transcriptional regulat 22.5 1.2E+02 0.004 25.8 5.4 50 466-525 28-77 (151)
136 2qww_A Transcriptional regulat 22.4 70 0.0024 27.3 3.9 37 488-525 45-81 (154)
137 2qvo_A Uncharacterized protein 22.4 44 0.0015 26.6 2.3 37 489-525 17-56 (95)
138 2nyx_A Probable transcriptiona 22.2 2.1E+02 0.0073 24.7 7.3 37 488-525 49-85 (168)
139 3cdh_A Transcriptional regulat 21.9 72 0.0025 27.3 3.9 28 498-525 56-83 (155)
140 3k0l_A Repressor protein; heli 21.4 1.2E+02 0.0039 26.3 5.2 51 466-525 36-86 (162)
141 4a18_F RPL14; ribosome, eukary 21.4 50 0.0017 28.6 2.5 30 161-202 4-33 (126)
142 3jw4_A Transcriptional regulat 21.4 1.3E+02 0.0045 25.4 5.5 60 372-435 72-141 (148)
143 3boq_A Transcriptional regulat 21.1 1.7E+02 0.0059 24.9 6.3 39 488-526 51-89 (160)
144 1k78_A Paired box protein PAX5 21.0 75 0.0026 27.3 3.8 36 490-525 39-74 (149)
145 2k4b_A Transcriptional regulat 21.0 77 0.0026 26.0 3.6 40 485-525 36-79 (99)
146 3oop_A LIN2960 protein; protei 20.4 94 0.0032 26.1 4.3 61 371-435 65-135 (143)
147 1z91_A Organic hydroperoxide r 20.4 71 0.0024 26.9 3.5 37 489-526 45-81 (147)
148 3bpv_A Transcriptional regulat 20.2 77 0.0026 26.3 3.6 37 488-525 33-69 (138)
149 2x48_A CAG38821; archeal virus 20.0 51 0.0017 23.2 2.0 32 491-522 23-54 (55)
No 1
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-112 Score=1004.78 Aligned_cols=553 Identities=42% Similarity=0.711 Sum_probs=479.1
Q ss_pred CCccEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHHhcCCCCcccccCCCChHHH
Q 008449 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNML 80 (565)
Q Consensus 1 mPAr~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~~~~~~~~l~S~f~~~~~~i 80 (565)
||+.+|||....+|||.+++++++++|.||+|||||+|.|..|.||+++++..++..+.+++.+.++|+.|+|+++|||+
T Consensus 546 iP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~i 625 (1108)
T 3l9o_A 546 MPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMI 625 (1108)
T ss_dssp C--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_pred CCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHH
Confidence 79999999999999999999999999999999999999999999999999887889999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 008449 81 LNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYC 160 (565)
Q Consensus 81 L~l~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~l~~~l~~i~~~~e~~i~~Y~~l~~~l~~~~~~~~~~~~~~~~~ 160 (565)
||+++++++++++|+++||++||+...++.+++++++++++++.+....+.++.+|+++++++...++.++..+.++.++
T Consensus 626 lnll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1108)
T 3l9o_A 626 LNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANA 705 (1108)
T ss_dssp HHHHHSTTCCHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEecCCCCCCCCCCCCCCccceEEEEEeeeeccCcCCCCCCCCCCCCCceEEEEeeccccCCCC------
Q 008449 161 LPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKDGA------ 234 (565)
Q Consensus 161 ~~~L~~GRlV~i~~~~~~~~~~~~~~~~~~~~~gvvv~~~~~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~------ 234 (565)
++||+|||||.|+.+. +.+||||||+++.+..+..++ .+..+....|+++||+.|....+..
T Consensus 706 ~~~l~~G~~v~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 773 (1108)
T 3l9o_A 706 LSFLQPGRLVEISVNG-----------KDNYGWGAVVDFAKRINKRNP-SAVYTDHESYIVNVVVNTMYIDSPVNLLKPF 773 (1108)
T ss_dssp HHHCCTTEEEEECCTT-----------CCEEEEEEEEEECCCC------CCSSSSEEEEEECCCSTTCCSCCCSSCTTTT
T ss_pred HhhCCCCCEEEEecCC-----------CcccceEEEEecccccccccc-cccCCCCCceeEEEEeccccccccccccccc
Confidence 9999999999998752 367999999998654211110 0011223458899998885211000
Q ss_pred ---CCCcccccCCCCCCCeEEEeecccceecccceeeeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCC-CCcccccCCCC
Q 008449 235 ---GKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRS 310 (565)
Q Consensus 235 ---~~~~~~p~~~~~~~~~~~~~v~~~~i~~is~~~~~~~~~~~~~~~r~~~~~~l~e~~~~~~~~~p-l~~~~~~~i~~ 310 (565)
.+..+.|+..+..+.+.++++++++|..||++++++|+++++...|+.+.+++.++.++||+++| ++|+++|++.+
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (1108)
T 3l9o_A 774 NPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIED 853 (1108)
T ss_dssp CCSGGGSSCCSCC---CCCCCCCEESSCEEEEEEEECCCCTTTTSHHHHHHHHHHHHHHHHHCSSCCTTHHHHHHHCCCC
T ss_pred cccCCccccCCCcccCCceEEEEechhheeeccceEEecCCCcCCHHHHHHHHHHHHHHHHhcCCCCcccChhhhcccCC
Confidence 11122344456778999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhchhcchhHHHHHHHHHHHhHhCCccCC
Q 008449 311 SSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSD 390 (565)
Q Consensus 311 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~~~~e~~~~~~VL~~Lgyid~~ 390 (565)
.+|.+...+++.|+++|.+||||+||++++||++++++.+|+++++++++++++++++.+++||++|++||++|||||++
T Consensus 854 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~ 933 (1108)
T 3l9o_A 854 EDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPN 933 (1108)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred CccchhhhhhhhhccCchhHHHHHHHhCCCCCCChHHHHHhhhcceeeccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 008449 391 DVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQL 470 (565)
Q Consensus 391 ~~vt~KGrvAceI~s~dELllTEllf~g~f~~L~p~eiaAlLS~fV~qek~~~~~~l~~~L~~~~~~l~~ia~~I~~v~~ 470 (565)
++||+||||||||+|+||||+|||||+|+|++|+|+||||||||||||+|+++.|.++++|++++++++++|++|+++|.
T Consensus 934 ~~v~~kgr~a~~i~~~~el~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ 1013 (1108)
T 3l9o_A 934 DIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMK 1013 (1108)
T ss_dssp CCCSHHHHHHHC-CCTTHHHHHHHHHHHCCCSSCCTHHHHHTCC------------------CHHHHHHHHHHHHHHHHH
T ss_pred CcCcHHhHHHHHhcCccHHHHHHHHHhCcccCCCHHHHHHHHhheeeecccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 008449 471 ECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAV 550 (565)
Q Consensus 471 ~~~l~~~~~~~~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllrqv~~Aa~~iGn~~L~~k~e~a~ 550 (565)
+|||++++++|+++|+||||+|||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++||++|+
T Consensus 1014 ~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~l~q~~~aa~~~g~~~l~~k~~~a~ 1093 (1108)
T 3l9o_A 1014 DSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVL 1093 (1108)
T ss_dssp HTTCSCHHHHHHHHHCCSCHHHHHHHHC----CCGGGTC--CHHHHHHHHHHHHHHHSCCCC----CCCHHHHHHHHHHH
T ss_pred HhCCCCChHHhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcccccCCCC
Q 008449 551 SKIKRDIVFAASLYL 565 (565)
Q Consensus 551 ~~IkRDIVfa~SLYl 565 (565)
++|||||||++||||
T Consensus 1094 ~~i~r~iv~~~slyl 1108 (1108)
T 3l9o_A 1094 KLIHRDIVSAGSLYL 1108 (1108)
T ss_dssp HHHHHHTCCCCCCC-
T ss_pred HHhcCCEEeeccccC
Confidence 999999999999997
No 2
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-109 Score=977.21 Aligned_cols=553 Identities=42% Similarity=0.710 Sum_probs=512.8
Q ss_pred CCccEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHHhcCCCCcccccCCCChHHH
Q 008449 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNML 80 (565)
Q Consensus 1 mPAr~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~~~~~~~~l~S~f~~~~~~i 80 (565)
||+.+|||.++.||||.+++++++.+|.||+|||||+|.|..|.||+++.+..++..+.+++.+.++|++|+|+++|+|+
T Consensus 448 iP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~~~i 527 (1010)
T 2xgj_A 448 MPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMI 527 (1010)
T ss_dssp CCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCHHHH
T ss_pred CCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcHHHH
Confidence 79999999999999999999999999999999999999999999999998877888999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 008449 81 LNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYC 160 (565)
Q Consensus 81 L~l~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~l~~~l~~i~~~~e~~i~~Y~~l~~~l~~~~~~~~~~~~~~~~~ 160 (565)
||+++..++++++|+++||++|+.....+.+++++++++++++.+..+.+.++.+|+.+++++...++.++.++.++.++
T Consensus 528 lnll~~~~~~~e~ll~rsf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 607 (1010)
T 2xgj_A 528 LNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANA 607 (1010)
T ss_dssp HHHHHSSSCCHHHHHHHCHHHHHHHHHHHHHHHHC-CHHHHHHSSCCCSCTHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEecCCCCCCCCCCCCCCccceEEEEEeeeeccCcCCCCCCCCCCCCCceEEEEeecccc--C---C---
Q 008449 161 LPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVS--K---D--- 232 (565)
Q Consensus 161 ~~~L~~GRlV~i~~~~~~~~~~~~~~~~~~~~~gvvv~~~~~~~~~~~~~~~~~~~~~~~v~vl~~~~~~--~---~--- 232 (565)
++||+|||||.++... +.+++||||+++.+.++ +++....+.....|+++||+.|... + .
T Consensus 608 ~~~l~~Gr~v~~~~~~-----------~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 675 (1010)
T 2xgj_A 608 LSFLQPGRLVEISVNG-----------KDNYGWGAVVDFAKRIN-KRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPF 675 (1010)
T ss_dssp GGGCCTTEEEEEEETT-----------TEEEEEEEEEEEEECCC-SSCTTCCCCTTTTEEEEEEEEEEETTSCGGGCCTT
T ss_pred HhhcCCCcEEEEEcCC-----------CCcceeEEEEecccccC-CCccccccccCCceeEEEEeecccccccccccccc
Confidence 9999999999999831 56799999999865421 1110112233457999999998411 1 0
Q ss_pred -CCCCCcccccCCCCCCCeEEEeecccceecccceeeeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCC-CCcccccCCCC
Q 008449 233 -GAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRS 310 (565)
Q Consensus 233 -~~~~~~~~p~~~~~~~~~~~~~v~~~~i~~is~~~~~~~~~~~~~~~r~~~~~~l~e~~~~~~~~~p-l~~~~~~~i~~ 310 (565)
...+....|.+++.++.|.++++++++|..|+++++++|+++++...|+.+.+++.++.++|++++| +||+++|++++
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (1010)
T 2xgj_A 676 NPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIED 755 (1010)
T ss_dssp CCCCCTTCCBCCTTCCEEEEEEEECGGGEEEEEEEECCCCSSTTCSSSHHHHHHHHHHHHHHSSSCCCBCCTTTTSCCCC
T ss_pred ccccccccCCCCCCcCCceEEEEechhhcceeeeeeEecccccCChHHHHHHHHHHHHHHHhcccCCcccCchhhhcccc
Confidence 0022344566677889999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhchhcchhHHHHHHHHHHHhHhCCccCC
Q 008449 311 SSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSD 390 (565)
Q Consensus 311 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~~~~e~~~~~~VL~~Lgyid~~ 390 (565)
.++.+...+++.|++++.+||||+||++++||++++++.+++++++++++++++++++.+++||++|++||++|||||++
T Consensus 756 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~ 835 (1010)
T 2xgj_A 756 EDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPN 835 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHTTSHHHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSBCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999998
Q ss_pred CccchhhhhhhhhccCchhHHHHHHHhCCCCCCChHHHHHhhhcceeeccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 008449 391 DVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQL 470 (565)
Q Consensus 391 ~~vt~KGrvAceI~s~dELllTEllf~g~f~~L~p~eiaAlLS~fV~qek~~~~~~l~~~L~~~~~~l~~ia~~I~~v~~ 470 (565)
++||+||||||||+|+||||+|||||+|+|++|+|+||||+|||||||+|+++.|.++++|.++++++.++|++|+++|.
T Consensus 836 ~~v~~kGr~a~~i~~~~el~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 915 (1010)
T 2xgj_A 836 DIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMK 915 (1010)
T ss_dssp CCBCHHHHHHHTCCSSCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHhcCccHHHHHHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 008449 471 ECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAV 550 (565)
Q Consensus 471 ~~~l~~~~~~~~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllrqv~~Aa~~iGn~~L~~k~e~a~ 550 (565)
+|+|++++++|++.|+||||+|||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++||++|+
T Consensus 916 ~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~~~l~~~~~~a~ 995 (1010)
T 2xgj_A 916 DSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVL 995 (1010)
T ss_dssp HTTCCCCHHHHHHTSCCTTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhCCCCChhHhcccCChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcccccCCCC
Q 008449 551 SKIKRDIVFAASLYL 565 (565)
Q Consensus 551 ~~IkRDIVfa~SLYl 565 (565)
++|||||||++||||
T Consensus 996 ~~i~R~iv~~~sly~ 1010 (1010)
T 2xgj_A 996 KLIHRDIVSAGSLYL 1010 (1010)
T ss_dssp HHHSCGGGGCCCC-C
T ss_pred HhccCCeEecccccC
Confidence 999999999999997
No 3
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=9.9e-105 Score=934.80 Aligned_cols=534 Identities=28% Similarity=0.439 Sum_probs=449.8
Q ss_pred CCccEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCCCceEEEEEcc-CCCCHHHHHHHhcCCCCcccccCCCChHH
Q 008449 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVD-DKMEPSTAKMMLKGSADSLNSAFHLSYNM 79 (565)
Q Consensus 1 mPAr~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~-~~~~~~~~~~~~~~~~~~l~S~f~~~~~~ 79 (565)
||+++|||.++.||||..++++++.+|+||+|||||+|.|..|.||+++. +.++...+.+++.|.++++.|+|+++|||
T Consensus 441 iP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm 520 (997)
T 4a4z_A 441 LPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNM 520 (997)
T ss_dssp CCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHH
T ss_pred CCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHH
Confidence 79999999999999999999999999999999999999999999999994 44678889999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHhhcccccch----hhHHHHHHHHHHHHHHHHHHHHHhc
Q 008449 80 LLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEE----DSLKNYYNLLQQYKSLKKDVRDIVF 155 (565)
Q Consensus 80 iL~l~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~l~~~l~~i~~~~e----~~i~~Y~~l~~~l~~~~~~~~~~~~ 155 (565)
++|+++.+...+++|++.||.+|+.....+..++.++++++++..+....+ .++++|++++.++.++++.+...+.
T Consensus 521 ~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~c~~c~~~~~~~~~~r~~~~~~~~~~~~~~~ 600 (997)
T 4a4z_A 521 ILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEMV 600 (997)
T ss_dssp HHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988889999999999999999999999999999999987765443 6899999999999999999987777
Q ss_pred CcccccCCCCCCcEEEEecCCCCCCCCCCCCCCccceEEEEEeeeeccCcCCCCCCCCCCCCCceEEEEeeccc-cC-CC
Q 008449 156 SPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVV-SK-DG 233 (565)
Q Consensus 156 ~~~~~~~~L~~GRlV~i~~~~~~~~~~~~~~~~~~~~~gvvv~~~~~~~~~~~~~~~~~~~~~~~v~vl~~~~~-~~-~~ 233 (565)
++.+++++|+|||||.|+++ ..+++||||+++...+ ....+.|++.... .. +.
T Consensus 601 ~~~~~~~~l~~gr~v~~~~~------------~~~~~~~~v~~~~~~~-------------~~~~~~v~~~~~~~~~~~~ 655 (997)
T 4a4z_A 601 KSPSILHILKEGRLVAFRDP------------NDCLKLGFVFKVSLKD-------------AVCVIMTFTKPYKLPNGEP 655 (997)
T ss_dssp TSTTHHHHTCTTEEEEEECT------------TCCEEEEEEEEEETTT-------------TEEEEEC-CCCCC------
T ss_pred cCHhHHhhCCCCCEEEEecC------------CCCeeEEEEEeeccCC-------------CCCceEEEeccccccccCc
Confidence 88889999999999999886 4467899999975431 1235566654210 00 00
Q ss_pred C-CCC------ccccc-CCCCCCCeEEEeecccceecccceeeeCC-CCC--CCHHHHHHHHHHHHHHHHhcCCCCC-CC
Q 008449 234 A-GKK------TLKIV-PLKESGEPLVVSVPISQIIKLSSARLPMP-KDL--LPLQTRENMLKSTSEFLARNASGLP-LD 301 (565)
Q Consensus 234 ~-~~~------~~~p~-~~~~~~~~~~~~v~~~~i~~is~~~~~~~-~~~--~~~~~r~~~~~~l~e~~~~~~~~~p-l~ 301 (565)
. .+. ...|. .....+.+.++++++++|..|+++++++| +++ +++..++.+.+.+.++.+. | ++
T Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 730 (997)
T 4a4z_A 656 NHLIYFPKADGYRRRNFPKFQKTDFYMEEVPVTAIEVITKRKFAAPLGKVIKKDVAALNEFNAETNNILDG-----KTLK 730 (997)
T ss_dssp ----CCTTCHHHHHHHCCCCCCCCCCEEEEECC-CCEEEEEECC-CHHHHHHTCHHHHHHHHHHHHHHHHS-----CCCC
T ss_pred cccCCCcccccccccccCcccCCceEEEEeccchhhhhhcccccCChHhhhcCCHHHHHHHHHHHHHHhcc-----CCCC
Confidence 0 000 01111 23456889999999999999999998887 443 3677888888888877554 6 89
Q ss_pred cccccCCCChHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhchhcchhHHHHHHHHHHH
Q 008449 302 PEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVL 381 (565)
Q Consensus 302 ~~~~~~i~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~~~~e~~~~~~VL 381 (565)
|++++++++.++.+...+++.++.++.+||||+||++++||++++++.++++++++|++++++ +++.+++||++|++||
T Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~vL 809 (997)
T 4a4z_A 731 EAINIEKQGLKIHQILLDRTNIRDEIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSD-QNLSLLPDYEKRLAVL 809 (997)
T ss_dssp CC------CCHHHHHHHHHHHHHHC------------CCSHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHH
T ss_pred chhhcccccHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 7888999999999999
Q ss_pred hHhCCccCCCccchhhhhhhhhccCchhHHHHHHHhCCCCCCChHHHHHhhhcceeeccC--CCCCCCcHHHHHHHHHHH
Q 008449 382 RRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKL--QDASKPREELELLFTQLQ 459 (565)
Q Consensus 382 ~~Lgyid~~~~vt~KGrvAceI~s~dELllTEllf~g~f~~L~p~eiaAlLS~fV~qek~--~~~~~l~~~L~~~~~~l~ 459 (565)
++|||||++++||+||||||||+|+|||++|||||+|+|++|+|+||||||||||||+|+ ++.|.+++.|++++.++.
T Consensus 810 ~~l~~~~~~~~v~~kgr~a~~i~~~~el~~te~~~~~~~~~l~~~~~~a~ls~~v~~~~~~~~~~~~~~~~l~~~~~~~~ 889 (997)
T 4a4z_A 810 KDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIE 889 (997)
T ss_dssp HHTTSBCTTCCBCHHHHHHTTCCSSCHHHHHHHHHSSGGGGCCHHHHHHHHGGGSCCCCCSSCCCCCSSHHHHHHHHHHH
T ss_pred HHcCCcCCCCcccHHhHHHhhhcCccHHHHHHHHHhCcccCCCHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 556889999999999999
Q ss_pred HHHHHHHHHHHHcCCCcc--cccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhhc
Q 008449 460 DTARRVAKVQLECKVQID--VEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSI 537 (565)
Q Consensus 460 ~ia~~I~~v~~~~~l~~~--~~~~~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllrqv~~Aa~~i 537 (565)
++|++|++++.+|+++++ +++|+++|+||||+|||+||+|+||++||++||++|||||||||||+|+||||++||++|
T Consensus 890 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~~~q~~~aa~~~ 969 (997)
T 4a4z_A 890 EIYKKMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIII 969 (997)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHGGGSCTTTTHHHHHHHHHTCCHHHHHHTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccchhhhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999985 478999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCcccccCCCC
Q 008449 538 GETELEAKFEEAVSKIKRDIVFAASLYL 565 (565)
Q Consensus 538 Gn~~L~~k~e~a~~~IkRDIVfa~SLYl 565 (565)
||++|++||++|+++|||||||++||||
T Consensus 970 g~~~l~~k~~~a~~~i~R~iv~~~slyl 997 (997)
T 4a4z_A 970 GNSTLHMKMSRAQELIKRDIVFAASLYL 997 (997)
T ss_dssp TCHHHHHHHHHHHHHHSCGGGGCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCeeecccccC
Confidence 9999999999999999999999999997
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.33 E-value=1.5e-12 Score=160.05 Aligned_cols=102 Identities=16% Similarity=0.198 Sum_probs=85.6
Q ss_pred CCccEEEEcCCeeecCCc--ceecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHHhcCCCCcccccCCCC-h
Q 008449 1 MPAKTVVFTNVRKFDGDK--FRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLS-Y 77 (565)
Q Consensus 1 mPAr~Vv~~~~~k~dg~~--~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~~~~~~~~l~S~f~~~-~ 77 (565)
|||++|||.++.+|||+. +.++++.+|.||+|||||+|+|+.|.+|++|.+. .....+.+.+.+.|++|+++.. .
T Consensus 1255 lPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~--~~~~~~~ll~~~~pveS~L~~~l~ 1332 (1724)
T 4f92_B 1255 VAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS--KKDFFKKFLYEPLPVESHLDHCMH 1332 (1724)
T ss_dssp CCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG--GHHHHHHHTTSCBCCCCCGGGSCH
T ss_pred CCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch--HHHHHHHHhCCCCceeeecccchH
Confidence 799999999999999975 4569999999999999999999999999999875 4444455567789999999765 4
Q ss_pred HHHHHHHhcCCCC----HHHHHHhhHHHHhh
Q 008449 78 NMLLNQIRCEEGS----PENLLRNSFYQFQA 104 (565)
Q Consensus 78 ~~iL~l~~~~~~~----~~~~l~~sf~~~~~ 104 (565)
.++++.+..+.+. +.+|+.+||+..+.
T Consensus 1333 ~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~ 1363 (1724)
T 4f92_B 1333 DHFNAEIVTKTIENKQDAVDYLTWTFLYRRM 1363 (1724)
T ss_dssp HHHHHHHHTTSCCBHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHhcccCCHHHHHHHHHhhHHHHHH
Confidence 6677778888764 68899999987643
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.25 E-value=9.7e-12 Score=153.03 Aligned_cols=102 Identities=24% Similarity=0.322 Sum_probs=83.2
Q ss_pred CCccEEEEcCCeeecCCc--ceecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHHhcCCCCcccccCCCChH
Q 008449 1 MPAKTVVFTNVRKFDGDK--FRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYN 78 (565)
Q Consensus 1 mPAr~Vv~~~~~k~dg~~--~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~~~~~~~~l~S~f~~~~~ 78 (565)
|||++|||.++++|||.. +.++++.+|+||+|||||+|+|+.|.+|+++.+. +...+..++. ...|++|+|.....
T Consensus 420 lPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~-~~~~~~~ll~-~~~pieS~l~~~l~ 497 (1724)
T 4f92_B 420 LPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHG-ELQYYLSLLN-QQLPIESQMVSKLP 497 (1724)
T ss_dssp CCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEEST-TCCHHHHHTT-TCSCCCCCTTTTHH
T ss_pred CCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecch-hHHHHHHHHc-CCCcchhhccccHH
Confidence 799999999999999974 5679999999999999999999999999999876 4556666655 46899999987744
Q ss_pred -HHHHHHhcCCCC----HHHHHHhhHHHHhh
Q 008449 79 -MLLNQIRCEEGS----PENLLRNSFYQFQA 104 (565)
Q Consensus 79 -~iL~l~~~~~~~----~~~~l~~sf~~~~~ 104 (565)
.++..+..+.+. +.+|++.||...+.
T Consensus 498 d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~ 528 (1724)
T 4f92_B 498 DMLNAEIVLGNVQNAKDAVNWLGYAYLYIRM 528 (1724)
T ss_dssp HHHHHHHHHTSCCBHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHhccHHHHHh
Confidence 444456666653 57889999987653
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.12 E-value=2.8e-10 Score=129.66 Aligned_cols=104 Identities=25% Similarity=0.342 Sum_probs=87.4
Q ss_pred CCccEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHH-HHHHHhcCCCCcccccCCCC---
Q 008449 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPS-TAKMMLKGSADSLNSAFHLS--- 76 (565)
Q Consensus 1 mPAr~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~-~~~~~~~~~~~~l~S~f~~~--- 76 (565)
+|+.+|||.++.+|||.++.+++..+|.||+|||||+|.|..|.||+++.+. +.. .+.+++.++++|++|++...
T Consensus 336 ip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~i~s~l~~~~~l 414 (720)
T 2zj8_A 336 TPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD-DPREVMNHYIFGKPEKLFSQLSNESNL 414 (720)
T ss_dssp CCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSS-CHHHHHHHHTTSCCCCCCCCTTCHHHH
T ss_pred CCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCc-cHHHHHHHHhcCCCCCcEeecCchhhH
Confidence 6999999999999998888899999999999999999999999999999876 333 34568889999999999764
Q ss_pred hHHHHHHHhcCCC----CHHHHHHhhHHHHhhc
Q 008449 77 YNMLLNQIRCEEG----SPENLLRNSFYQFQAD 105 (565)
Q Consensus 77 ~~~iL~l~~~~~~----~~~~~l~~sf~~~~~~ 105 (565)
...+++++..+.. ++.+++..+|...+..
T Consensus 415 ~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~ 447 (720)
T 2zj8_A 415 RSQVLALIATFGYSTVEEILKFISNTFYAYQRK 447 (720)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCS
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhChHHHhcc
Confidence 4567777777654 2678899999988764
No 7
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.05 E-value=4e-10 Score=128.03 Aligned_cols=103 Identities=30% Similarity=0.518 Sum_probs=84.2
Q ss_pred CCccEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHH-HHHHhcCCCCcccccCCCC---
Q 008449 1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPST-AKMMLKGSADSLNSAFHLS--- 76 (565)
Q Consensus 1 mPAr~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~-~~~~~~~~~~~l~S~f~~~--- 76 (565)
+|+.+|||.++.+|||. ..+++..+|.||+|||||+|.|..|.||+++.+. +... +.+++.+.++|++|.+...
T Consensus 338 ip~~~~VI~~~~~yd~~-~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~-~~~~~~~~~l~~~~e~~~s~l~~~~~l 415 (702)
T 2p6r_A 338 LPARRVIVRSLYRFDGY-SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR-DREIAVKRYIFGEPERITSKLGVETHL 415 (702)
T ss_dssp CCBSEEEECCSEEESSS-EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG-GHHHHHHTTTSSCCCCCCCCCCSHHHH
T ss_pred CCceEEEEcCceeeCCC-CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCc-cHHHHHHHHhcCCCCCceeecCcchhH
Confidence 69999999999999965 6789999999999999999999999999999865 2333 3357789999999999763
Q ss_pred hHHHHHHHhcCCC-C---HHHHHHhhHHHHhhc
Q 008449 77 YNMLLNQIRCEEG-S---PENLLRNSFYQFQAD 105 (565)
Q Consensus 77 ~~~iL~l~~~~~~-~---~~~~l~~sf~~~~~~ 105 (565)
...+|+++..+.+ + +.+|+.+||...+..
T Consensus 416 ~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~ 448 (702)
T 2p6r_A 416 RFHSLSIICDGYAKTLEELEDFFADTFFFKQNE 448 (702)
T ss_dssp HHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh
Confidence 3467778877754 2 567788899887654
No 8
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.99 E-value=4.4e-10 Score=127.85 Aligned_cols=103 Identities=32% Similarity=0.492 Sum_probs=75.2
Q ss_pred CCccEEEEcCCeeec---CCcceecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCH-HHHHHHhcCCCCcccccCCCC
Q 008449 1 MPAKTVVFTNVRKFD---GDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEP-STAKMMLKGSADSLNSAFHLS 76 (565)
Q Consensus 1 mPAr~Vv~~~~~k~d---g~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~-~~~~~~~~~~~~~l~S~f~~~ 76 (565)
+|+.+|||.++.+|| |.+..+++..+|.||+|||||+|.|..|.||+++.+..+. ..+.+++.+.++|++|.+...
T Consensus 354 ip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~ 433 (715)
T 2va8_A 354 LPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSE 433 (715)
T ss_dssp CCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSH
T ss_pred CCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCch
Confidence 699999999999999 6667789999999999999999999999999999765222 335567889999999999764
Q ss_pred ---hHHHHHHHhcCCC----CHHHHHHhhHHHHh
Q 008449 77 ---YNMLLNQIRCEEG----SPENLLRNSFYQFQ 103 (565)
Q Consensus 77 ---~~~iL~l~~~~~~----~~~~~l~~sf~~~~ 103 (565)
+..+|+++..+.+ ++.+|+.++|...+
T Consensus 434 ~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~ 467 (715)
T 2va8_A 434 RAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQ 467 (715)
T ss_dssp HHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHH
T ss_pred hHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhh
Confidence 4567888877755 36777888887665
No 9
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.19 E-value=1.1e-06 Score=99.17 Aligned_cols=74 Identities=26% Similarity=0.422 Sum_probs=57.6
Q ss_pred CCccEEEEcCCeeec----C-CcceecCHHHHHHhhccCCCCCCC-CceEEEEEccCCCCHHHHHHHhcCCCCccccc-C
Q 008449 1 MPAKTVVFTNVRKFD----G-DKFRWISSGEYIQMSGRAGRRGID-ERGICILMVDDKMEPSTAKMMLKGSADSLNSA-F 73 (565)
Q Consensus 1 mPAr~Vv~~~~~k~d----g-~~~r~l~~~E~~QM~GRAGRrg~D-~~G~~ii~~~~~~~~~~~~~~~~~~~~~l~S~-f 73 (565)
+|+++||+.++.||+ | .+.++++..+|.||+|||||.|.+ ..|.|++++... ...+.+++.+.+.++.+. +
T Consensus 388 i~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d--~~~~~~~~~~~~~~i~~~~l 465 (677)
T 3rc3_A 388 LSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHED--LSLLKEILKRPVDPIRAAGL 465 (677)
T ss_dssp CCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH--HHHHHHHHHSCCCCCCCEEE
T ss_pred cCccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecch--HHHHHHHHhcCcchhhhccC
Confidence 479999999999974 3 246789999999999999999998 579998887653 567888999999999874 3
Q ss_pred CCC
Q 008449 74 HLS 76 (565)
Q Consensus 74 ~~~ 76 (565)
..+
T Consensus 466 ~p~ 468 (677)
T 3rc3_A 466 HPT 468 (677)
T ss_dssp CCC
T ss_pred CCh
Confidence 444
No 10
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=96.59 E-value=0.0022 Score=59.27 Aligned_cols=29 Identities=28% Similarity=0.570 Sum_probs=21.7
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
.++.+|.||+|||||.| ..|.+++++.+.
T Consensus 119 ~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~ 147 (175)
T 2rb4_A 119 PDYETYLHRIGRTGRFG--KKGLAFNMIEVD 147 (175)
T ss_dssp CCHHHHHHHHCBC------CCEEEEEEECGG
T ss_pred CCHHHHHHHhcccccCC--CCceEEEEEccc
Confidence 68899999999999998 459999998764
No 11
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=96.53 E-value=0.003 Score=57.64 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=25.5
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
+.++.+|.||+|||||.|. .|.+++++.+.
T Consensus 113 p~~~~~~~qr~GR~~R~g~--~g~~~~~~~~~ 142 (163)
T 2hjv_A 113 PLEKESYVHRTGRTGRAGN--KGKAISFVTAF 142 (163)
T ss_dssp CSSHHHHHHHTTTSSCTTC--CEEEEEEECGG
T ss_pred CCCHHHHHHhccccCcCCC--CceEEEEecHH
Confidence 4688999999999999985 48998888754
No 12
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=96.40 E-value=0.0012 Score=60.42 Aligned_cols=50 Identities=24% Similarity=0.419 Sum_probs=31.3
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHH---HHHHHhcCCCCcccccC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPS---TAKMMLKGSADSLNSAF 73 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~---~~~~~~~~~~~~l~S~f 73 (565)
+.++.+|.||+|||||.| ..|.+++++.+. +.. .+.+++..+.+++.+.+
T Consensus 108 p~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
T 1fuk_A 108 PANKENYIHRIGRGGRFG--RKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDI 160 (165)
T ss_dssp CSSGGGGGGSSCSCC-------CEEEEEEETT-THHHHHHHHHHSSCCCEECCSCC
T ss_pred CCCHHHHHHHhcccccCC--CCceEEEEEcch-HHHHHHHHHHHHccCccccCccH
Confidence 457899999999999999 469999888765 333 34444555555555443
No 13
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.16 E-value=0.0029 Score=66.31 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=31.8
Q ss_pred cEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCC--CceEEEEEcc
Q 008449 4 KTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGID--ERGICILMVD 50 (565)
Q Consensus 4 r~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D--~~G~~ii~~~ 50 (565)
+.||..++-+ ..++..|.||+|||||.|.+ ..|.+|++++
T Consensus 322 ~~VI~~~~p~-------~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 322 KYVIFWGTPS-------GPDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp CEEEEESCCT-------TTCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred CEEEEECCCC-------CCCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 6666555321 16789999999999999998 7999999993
No 14
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=96.03 E-value=0.0059 Score=57.15 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=25.5
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
+.++.+|.||+|||||.|. .|.+++++.+.
T Consensus 124 p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~ 153 (185)
T 2jgn_A 124 PSDIEEYVHRIGRTGRVGN--LGLATSFFNER 153 (185)
T ss_dssp CSSHHHHHHHHTTBCCTTS--CEEEEEEECGG
T ss_pred CCCHHHHHHHccccCCCCC--CcEEEEEEchh
Confidence 3578999999999999994 59999988654
No 15
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.89 E-value=0.0068 Score=62.23 Aligned_cols=45 Identities=31% Similarity=0.485 Sum_probs=33.0
Q ss_pred ccEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 3 AKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 3 Ar~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
++.||..++.++.+ ..+++..|.||+|||||.|. .|.+++++.+.
T Consensus 312 ~~~Vi~~~~p~~~~---~~~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~ 356 (395)
T 3pey_A 312 VSMVVNYDLPTLAN---GQADPATYIHRIGRTGRFGR--KGVAISFVHDK 356 (395)
T ss_dssp EEEEEESSCCBCTT---SSBCHHHHHHHHTTSSCTTC--CEEEEEEECSH
T ss_pred CCEEEEcCCCCCCc---CCCCHHHhhHhccccccCCC--CceEEEEEech
Confidence 45566655543322 24689999999999999985 59999888754
No 16
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.89 E-value=0.011 Score=55.65 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=22.9
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
+.++.+|.||+|||||.|. .|.+++++.+.
T Consensus 132 p~~~~~~~qr~GR~gR~g~--~g~~i~l~~~~ 161 (191)
T 2p6n_A 132 PEEIENYVHRIGRTGCSGN--TGIATTFINKA 161 (191)
T ss_dssp CSSHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred CCCHHHHHHHhCccccCCC--CcEEEEEEcCc
Confidence 3578999999999999987 48888888764
No 17
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=95.84 E-value=0.0034 Score=57.97 Aligned_cols=30 Identities=37% Similarity=0.584 Sum_probs=25.5
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
+.++.+|.||+|||||.|. .|.+++++.+.
T Consensus 109 p~~~~~~~qr~GR~~R~g~--~g~~~~~~~~~ 138 (172)
T 1t5i_A 109 PEDSDTYLHRVARAGRFGT--KGLAITFVSDE 138 (172)
T ss_dssp CSSHHHHHHHHHHHTGGGC--CCEEEEEECSH
T ss_pred CCCHHHHHHHhcccccCCC--CcEEEEEEcCh
Confidence 3578999999999999995 59999998754
No 18
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.80 E-value=0.0061 Score=62.76 Aligned_cols=29 Identities=38% Similarity=0.667 Sum_probs=25.1
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
-++.+|.||+|||||.| ..|.++++..+.
T Consensus 329 ~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~ 357 (391)
T 1xti_A 329 EDSDTYLHRVARAGRFG--TKGLAITFVSDE 357 (391)
T ss_dssp SSHHHHHHHHCBCSSSC--CCCEEEEEECSH
T ss_pred CCHHHHHHhcccccCCC--CceEEEEEEccc
Confidence 57899999999999998 469999988764
No 19
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=95.66 E-value=0.011 Score=56.37 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=24.9
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
+.++..|.|++|||||.|.. |.+++++.+.
T Consensus 109 p~~~~~~~qr~GR~gR~g~~--g~~~~l~~~~ 138 (212)
T 3eaq_A 109 PDRAEAYQHRSGRTGRAGRG--GRVVLLYGPR 138 (212)
T ss_dssp CSSHHHHHHHHTTBCCCC----BEEEEEECGG
T ss_pred CcCHHHHHHHhcccCCCCCC--CeEEEEEchh
Confidence 35789999999999999954 9999998765
No 20
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.65 E-value=0.012 Score=62.89 Aligned_cols=48 Identities=21% Similarity=0.125 Sum_probs=34.4
Q ss_pred CCccEEEEcCCee-----ecCC-----cceecCHHHHHHhhccCCCCCCCCceEEEEEc
Q 008449 1 MPAKTVVFTNVRK-----FDGD-----KFRWISSGEYIQMSGRAGRRGIDERGICILMV 49 (565)
Q Consensus 1 mPAr~Vv~~~~~k-----~dg~-----~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~ 49 (565)
+|++.||..++.+ +++. --.+.+..+|.||+|||||.|- ..|.++++.
T Consensus 239 ipv~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~-~~g~~~~l~ 296 (440)
T 1yks_A 239 LCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN-RDGDSYYYS 296 (440)
T ss_dssp CCCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEEEEEC
T ss_pred cCceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCC-CCceEEEEe
Confidence 4777888765543 2332 2246899999999999999852 359999996
No 21
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=95.57 E-value=0.022 Score=62.20 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=29.5
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHHh
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMML 62 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~~ 62 (565)
.++.+|.||+|||||.|. .|.+++++.+. +...+..+.
T Consensus 421 ~s~~~y~Qr~GRagR~g~--~g~~i~~~~~~-e~~~~~~l~ 458 (563)
T 3i5x_A 421 SELANYIHRIGRTARSGK--EGSSVLFICKD-ELPFVRELE 458 (563)
T ss_dssp SSTTHHHHHHTTSSCTTC--CEEEEEEEEGG-GHHHHHHHH
T ss_pred CchhhhhhhcCccccCCC--CceEEEEEchh-HHHHHHHHH
Confidence 478999999999999985 49999888764 455555553
No 22
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.51 E-value=0.014 Score=62.51 Aligned_cols=32 Identities=25% Similarity=0.137 Sum_probs=26.4
Q ss_pred eecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 20 RWISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 20 r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
.+.++.+|.||+|||||.|. ..|.+++++...
T Consensus 282 ~p~s~~~~~QR~GRaGR~g~-~~G~~~~~~~~~ 313 (459)
T 2z83_A 282 SPITSASAAQRRGRVGRNPN-QVGDEYHYGGAT 313 (459)
T ss_dssp EECCHHHHHHHHTTSSCCTT-CCCEEEEECSCC
T ss_pred CCCCHHHHHHhccccCCCCC-CCCeEEEEEccc
Confidence 56799999999999999996 358888887653
No 23
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.38 E-value=0.019 Score=58.25 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=27.7
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHH
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAK 59 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~ 59 (565)
+.++.+|.||+|||||.|.+ |.++++..+. +...+.
T Consensus 316 ~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~-~~~~~~ 351 (367)
T 1hv8_A 316 PQNPESYMHRIGRTGRAGKK--GKAISIINRR-EYKKLR 351 (367)
T ss_dssp CSCHHHHHHHSTTTCCSSSC--CEEEEEECTT-SHHHHH
T ss_pred CCCHHHhhhcccccccCCCc--cEEEEEEcHH-HHHHHH
Confidence 45789999999999999965 8888887765 444333
No 24
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.32 E-value=0.016 Score=59.98 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=29.1
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHH
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMM 61 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~ 61 (565)
+.++..|.||+|||||.|. .|.++++..+. +...+.++
T Consensus 336 p~s~~~~~Qr~GR~gR~g~--~g~~~~l~~~~-~~~~~~~i 373 (400)
T 1s2m_A 336 PKTAETYLHRIGRSGRFGH--LGLAINLINWN-DRFNLYKI 373 (400)
T ss_dssp CSSHHHHHHHHCBSSCTTC--CEEEEEEECGG-GHHHHHHH
T ss_pred CCCHHHHHHhcchhcCCCC--CceEEEEeccc-hHHHHHHH
Confidence 3578999999999999995 59999998765 44444443
No 25
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.28 E-value=0.026 Score=64.63 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=50.2
Q ss_pred CCccEEEEc-CC---eeecCC-cce-----ecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHHhc--CCCCc
Q 008449 1 MPAKTVVFT-NV---RKFDGD-KFR-----WISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLK--GSADS 68 (565)
Q Consensus 1 mPAr~Vv~~-~~---~k~dg~-~~r-----~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~~~--~~~~~ 68 (565)
+|.-++||. ++ ..||+. +.. +++...|.||+|||||. ..|.||.++. +..+...+. ..|+-
T Consensus 385 Ip~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~----~~~~~~~l~~~~~pEi 457 (773)
T 2xau_A 385 IDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYT----EEAFQKELIEQSYPEI 457 (773)
T ss_dssp CTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSC----HHHHHHTSCSSCCCGG
T ss_pred cCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEec----HHHhcccccccCCCcc
Confidence 354444544 44 348875 222 68999999999999998 5799999975 344433232 33344
Q ss_pred ccccCCCChHHHHHHHhcCCCCH
Q 008449 69 LNSAFHLSYNMLLNQIRCEEGSP 91 (565)
Q Consensus 69 l~S~f~~~~~~iL~l~~~~~~~~ 91 (565)
+.+.+ .+.+|.+...+.-++
T Consensus 458 ~r~~L---~~~~L~l~~~gi~~~ 477 (773)
T 2xau_A 458 LRSNL---SSTVLELKKLGIDDL 477 (773)
T ss_dssp GGSCC---HHHHHHHHHTTCCCG
T ss_pred ccCcH---HHHHHHHHHcCCCCh
Confidence 33333 366777776654333
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.14 E-value=0.016 Score=62.94 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=27.9
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCCC---CHHHHHHHhcCCCCccc
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDKM---EPSTAKMMLKGSADSLN 70 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~---~~~~~~~~~~~~~~~l~ 70 (565)
.++.+|.||+|||||.|.+ |.+++++.+.. ....+.+++....+++.
T Consensus 442 ~s~~~~~Qr~GRagR~g~~--g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~ 491 (508)
T 3fho_A 442 PDPQTYLHRIGRTGRFGRV--GVSINFVHDKKSWEEMNAIQEYFQRPITRVP 491 (508)
T ss_dssp -CTHHHHHTTSCCC-------CEEEEEECTTTSSSSHHHHHHHSCCCCC---
T ss_pred CCHHHHHHHhhhcCCCCCC--cEEEEEEeChHHHHHHHHHHHHHCCCcccCC
Confidence 6789999999999999854 88888886542 24556666555555544
No 27
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=94.78 E-value=0.021 Score=59.31 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=23.8
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
+.+..+|.||+|||||.|. .|.++++..+.
T Consensus 354 p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~ 383 (417)
T 2i4i_A 354 PSDIEEYVHRIGRTGRVGN--LGLATSFFNER 383 (417)
T ss_dssp CSSHHHHHHHHTTBCC--C--CEEEEEEECGG
T ss_pred CCCHHHHHHhcCccccCCC--CceEEEEEccc
Confidence 3578999999999999995 49999998764
No 28
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=94.61 E-value=0.027 Score=60.12 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=24.9
Q ss_pred eecCHHHHHHhhccCCCCCCCCceEEEEEcc
Q 008449 20 RWISSGEYIQMSGRAGRRGIDERGICILMVD 50 (565)
Q Consensus 20 r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~ 50 (565)
.+.+..+|.||+|||||.|.+ .|.++++..
T Consensus 280 ~p~s~~~y~Qr~GRaGR~g~~-~g~~~~~~~ 309 (451)
T 2jlq_A 280 IPVTPASAAQRRGRIGRNPAQ-EDDQYVFSG 309 (451)
T ss_dssp EECCHHHHHHHHTTSSCCTTC-CCEEEEECS
T ss_pred ccCCHHHHHHhccccCCCCCC-CccEEEEeC
Confidence 668999999999999999975 466777764
No 29
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.55 E-value=0.019 Score=59.46 Aligned_cols=29 Identities=38% Similarity=0.657 Sum_probs=19.4
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
.++..|.||+|||||.|.+ |.+++++.+.
T Consensus 359 ~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 387 (414)
T 3eiq_A 359 TNRENYIHRIGRGGRFGRK--GVAINMVTEE 387 (414)
T ss_dssp SSTHHHHHHSCCC---------CEEEEECST
T ss_pred CCHHHhhhhcCcccCCCCC--ceEEEEEcHH
Confidence 4789999999999999854 9999988765
No 30
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=93.55 E-value=0.0064 Score=55.84 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=24.9
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
+.++.+|.||+|||||.|. .|.+++++.+.
T Consensus 108 p~~~~~~~qr~GR~~R~g~--~g~~~~~~~~~ 137 (170)
T 2yjt_D 108 PRSGDTYLHRIGRTARAGR--KGTAISLVEAH 137 (170)
Confidence 3578999999999999885 58888888654
No 31
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.52 E-value=0.024 Score=58.81 Aligned_cols=45 Identities=24% Similarity=0.425 Sum_probs=31.7
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHH---HHHHHhcCCCCcc
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPS---TAKMMLKGSADSL 69 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~---~~~~~~~~~~~~l 69 (565)
-++..|.||+|||||.|. .|.++++..+. +.. .+.+++....+++
T Consensus 355 ~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~-~~~~~~~i~~~~~~~~~~~ 402 (410)
T 2j0s_A 355 NNRELYIHRIGRSGRYGR--KGVAINFVKND-DIRILRDIEQYYSTQIDEM 402 (410)
T ss_dssp SSHHHHHHHHTTSSGGGC--CEEEEEEEEGG-GHHHHHHHHHHTTCCCEEC
T ss_pred CCHHHHHHhcccccCCCC--ceEEEEEecHH-HHHHHHHHHHHhCCCceec
Confidence 578999999999999985 59999998764 333 3444444444433
No 32
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=94.41 E-value=0.032 Score=60.82 Aligned_cols=41 Identities=27% Similarity=0.358 Sum_probs=30.6
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHHhcC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKG 64 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~~~~ 64 (565)
+-+...|.|++|||||.|.+ |.++++..+. +...+..++..
T Consensus 314 p~s~~~y~Qr~GRaGR~g~~--~~~~l~~~~~-d~~~~~~~~~~ 354 (523)
T 1oyw_A 314 PRNIESYYQETGRAGRDGLP--AEAMLFYDPA-DMAWLRRCLEE 354 (523)
T ss_dssp CSSHHHHHHHHTTSCTTSSC--EEEEEEECHH-HHHHHHHHHHT
T ss_pred CCCHHHHHHHhccccCCCCC--ceEEEEeCHH-HHHHHHHHHhc
Confidence 35789999999999999874 8999887653 34445555554
No 33
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=94.33 E-value=0.039 Score=55.86 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=21.5
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
-++..|.|++|||||.|.. |.+++++.+.
T Consensus 107 ~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~ 135 (300)
T 3i32_A 107 DRAEAYQHRSGRTGRAGRG--GRVVLLYGPR 135 (300)
T ss_dssp SSTTHHHHHHTCCC-------CEEEEEECSS
T ss_pred CCHHHHHHHccCcCcCCCC--ceEEEEeChH
Confidence 4789999999999999965 9999999765
No 34
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.31 E-value=0.036 Score=57.27 Aligned_cols=29 Identities=41% Similarity=0.707 Sum_probs=25.1
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
.+...|.||+|||||.|. .|.+++++++.
T Consensus 351 ~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~ 379 (412)
T 3fht_A 351 PDNETYLHRIGRTGRFGK--RGLAVNMVDSK 379 (412)
T ss_dssp BCHHHHHHHHTTSSCTTC--CEEEEEEECSH
T ss_pred cchheeecccCcccCCCC--CceEEEEEcCh
Confidence 578999999999999984 59999998764
No 35
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=94.27 E-value=0.052 Score=57.44 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=25.3
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
.+..+|.||+|||||.|. .|.++++..+.
T Consensus 379 ~~~~~y~qriGR~gR~g~--~G~a~~~~~~~ 407 (434)
T 2db3_A 379 SKIDDYVHRIGRTGRVGN--NGRATSFFDPE 407 (434)
T ss_dssp SSHHHHHHHHTTSSCTTC--CEEEEEEECTT
T ss_pred CCHHHHHHHhcccccCCC--CCEEEEEEecc
Confidence 578999999999999996 59999998754
No 36
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=94.02 E-value=0.04 Score=60.55 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=29.4
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHHh
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMML 62 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~~ 62 (565)
.++..|.||+|||||.|. .|.+++++.+. +...+..+.
T Consensus 370 ~s~~~y~Qr~GRagR~g~--~g~~i~~~~~~-e~~~~~~l~ 407 (579)
T 3sqw_A 370 SELANYIHRIGRTARSGK--EGSSVLFICKD-ELPFVRELE 407 (579)
T ss_dssp SSTTHHHHHHTTSSCTTC--CEEEEEEEEGG-GHHHHHHHH
T ss_pred CCHHHhhhhccccccCCC--CceEEEEEccc-HHHHHHHHH
Confidence 478999999999999986 49999888765 444455543
No 37
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=93.92 E-value=0.059 Score=60.03 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=35.7
Q ss_pred CCccEEEEcCCeee-----cCC------cceecCHHHHHHhhccCCCCCCCCceEEEEEcc
Q 008449 1 MPAKTVVFTNVRKF-----DGD------KFRWISSGEYIQMSGRAGRRGIDERGICILMVD 50 (565)
Q Consensus 1 mPAr~Vv~~~~~k~-----dg~------~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~ 50 (565)
+|++.||+.++.+. +.. --.+.+..+|.||+|||||.|.. .|.+|++..
T Consensus 417 i~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~-~G~ai~l~~ 476 (618)
T 2whx_A 417 FRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ-EDDQYVFSG 476 (618)
T ss_dssp CCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC-CCEEEEECS
T ss_pred cCceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCC-CCeEEEEcc
Confidence 47788888876433 111 11358999999999999999863 588888875
No 38
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.79 E-value=0.041 Score=55.01 Aligned_cols=35 Identities=31% Similarity=0.365 Sum_probs=26.6
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHH
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~ 60 (565)
.++.+|.||+|||||.|.+ |.++++..+ +...+.+
T Consensus 295 ~s~~~~~Q~~GR~gR~g~~--g~~~~~~~~--~~~~~~~ 329 (337)
T 2z0m_A 295 QDLRTYIHRIGRTGRMGRK--GEAITFILN--EYWLEKE 329 (337)
T ss_dssp SSHHHHHHHHTTBCGGGCC--EEEEEEESS--CHHHHHH
T ss_pred CCHHHhhHhcCccccCCCC--ceEEEEEeC--cHHHHHH
Confidence 5789999999999999965 888887772 3444443
No 39
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.32 E-value=0.069 Score=56.60 Aligned_cols=49 Identities=18% Similarity=0.030 Sum_probs=32.9
Q ss_pred CCccEEEEcCCeee---cC-----CcceecCHHHHHHhhccCCCCCCCCceEEEEEcc
Q 008449 1 MPAKTVVFTNVRKF---DG-----DKFRWISSGEYIQMSGRAGRRGIDERGICILMVD 50 (565)
Q Consensus 1 mPAr~Vv~~~~~k~---dg-----~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~ 50 (565)
+|..+||..+..+. |. ..-.+.+..+|.||+|||||.|.. .|.++++..
T Consensus 233 ip~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~-~~~~~~~~~ 289 (431)
T 2v6i_A 233 FKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEK-LGDIYAYSG 289 (431)
T ss_dssp CCCSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTC-CCCEEEECS
T ss_pred cCCcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCC-CCeEEEEcC
Confidence 47777776654432 11 112457999999999999999864 466666654
No 40
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=93.07 E-value=0.093 Score=58.96 Aligned_cols=42 Identities=33% Similarity=0.369 Sum_probs=33.0
Q ss_pred cEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 4 KTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 4 r~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
+.||+.+..+|. + +-+...|.||+|||||.| .|.+|++++..
T Consensus 509 ~lVI~~d~d~~G---~-p~s~~~~iQr~GRagR~~---~G~~i~~~~~~ 550 (664)
T 1c4o_A 509 SLVAILDADKEG---F-LRSERSLIQTIGRAARNA---RGEVWLYADRV 550 (664)
T ss_dssp EEEEETTTTSCS---G-GGSHHHHHHHHGGGTTST---TCEEEEECSSC
T ss_pred CEEEEeCCcccC---C-CCCHHHHHHHHCccCcCC---CCEEEEEEcCC
Confidence 678888765552 1 347789999999999985 69999999765
No 41
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.96 E-value=0.067 Score=59.27 Aligned_cols=39 Identities=33% Similarity=0.408 Sum_probs=29.3
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHHhc
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLK 63 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~~~ 63 (565)
-+...|.|++|||||.|. .|.++++..+. +...+..++.
T Consensus 346 ~s~~~y~Qr~GRaGR~G~--~g~~i~l~~~~-D~~~~~~~~~ 384 (591)
T 2v1x_A 346 KSMENYYQESGRAGRDDM--KADCILYYGFG-DIFRISSMVV 384 (591)
T ss_dssp SSHHHHHHHHTTSCTTSS--CEEEEEEECHH-HHHHHHHHTT
T ss_pred CCHHHHHHHhccCCcCCC--CceEEEEEChH-HHHHHHHHHh
Confidence 478999999999999886 59999987643 3444555553
No 42
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=92.87 E-value=0.019 Score=58.99 Aligned_cols=29 Identities=34% Similarity=0.646 Sum_probs=0.0
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
.++.+|.||+|||||.|. .|.++++..+.
T Consensus 338 ~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~ 366 (394)
T 1fuu_A 338 ANKENYIHRIGRGGRFGR--KGVAINFVTNE 366 (394)
T ss_dssp -------------------------------
T ss_pred CCHHHHHHHcCcccCCCC--CceEEEEEchh
Confidence 577899999999999985 48998888764
No 43
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=92.85 E-value=0.019 Score=61.34 Aligned_cols=29 Identities=41% Similarity=0.707 Sum_probs=0.0
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
.+...|.||+|||||.|. .|.+++++.+.
T Consensus 418 ~s~~~~~Qr~GRagR~g~--~G~~i~~~~~~ 446 (479)
T 3fmp_B 418 PDNETYLHRIGRTGRFGK--RGLAVNMVDSK 446 (479)
T ss_dssp -------------------------------
T ss_pred CCHHHHHHHhcccccCCC--CceEEEEEcCc
Confidence 466899999999999884 59999998764
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=92.32 E-value=0.099 Score=62.14 Aligned_cols=38 Identities=29% Similarity=0.598 Sum_probs=29.4
Q ss_pred ecCCcceec--CHHHHHHhhccCCC--CCCCCceEEEEEccC
Q 008449 14 FDGDKFRWI--SSGEYIQMSGRAGR--RGIDERGICILMVDD 51 (565)
Q Consensus 14 ~dg~~~r~l--~~~E~~QM~GRAGR--rg~D~~G~~ii~~~~ 51 (565)
++|.++..+ .+..|+|++||+|| +|-.+.|.+|+++++
T Consensus 450 ~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d 491 (1104)
T 4ddu_A 450 VKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEED 491 (1104)
T ss_dssp EETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCC
T ss_pred ecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEec
Confidence 455544332 67899999999999 666689999999964
No 45
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=92.29 E-value=0.13 Score=57.76 Aligned_cols=48 Identities=27% Similarity=0.227 Sum_probs=33.8
Q ss_pred CCccEEEEcCCee-------ecCC-c----ceecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 1 MPAKTVVFTNVRK-------FDGD-K----FRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 1 mPAr~Vv~~~~~k-------~dg~-~----~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
+|.+.||..++.+ ||++ + ..+.+..+|.|++||||| | ..|. |.+..+.
T Consensus 455 IdV~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G~-i~lvt~~ 514 (666)
T 3o8b_A 455 GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRGI-YRFVTPG 514 (666)
T ss_dssp CCBSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCEE-EEESCCC
T ss_pred CCCcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCCE-EEEEecc
Confidence 3778888776544 3332 1 156789999999999999 5 4588 6666543
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=92.16 E-value=0.14 Score=57.57 Aligned_cols=48 Identities=23% Similarity=0.137 Sum_probs=33.0
Q ss_pred CCccEEEEcCCe-----eecCC------cceecCHHHHHHhhccCCCCCCCCceEEEEEc
Q 008449 1 MPAKTVVFTNVR-----KFDGD------KFRWISSGEYIQMSGRAGRRGIDERGICILMV 49 (565)
Q Consensus 1 mPAr~Vv~~~~~-----k~dg~------~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~ 49 (565)
+|+++||..++. .||.. --.+.++.+|.|++|||||.| ...|.+|++.
T Consensus 472 ipv~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~-g~~G~ai~l~ 530 (673)
T 2wv9_A 472 FGASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNP-SQIGDEYHYG 530 (673)
T ss_dssp CCCSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCS-SCCCEEEEEC
T ss_pred eCCcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCC-CCCCEEEEEE
Confidence 466777764421 13332 224678999999999999984 2469999885
No 47
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.73 E-value=0.19 Score=56.46 Aligned_cols=42 Identities=31% Similarity=0.373 Sum_probs=33.0
Q ss_pred cEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 4 KTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 4 r~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
+.||+.+..+|. + +-+...|.||+|||||. ..|.+|+++++.
T Consensus 515 ~lVi~~d~d~~G---~-p~s~~~~iQr~GRagR~---~~G~~i~~~~~~ 556 (661)
T 2d7d_A 515 SLVAILDADKEG---F-LRSERSLIQTIGRAARN---AEGRVIMYADKI 556 (661)
T ss_dssp EEEEETTTTCCT---T-TTSHHHHHHHHHTTTTS---TTCEEEEECSSC
T ss_pred CEEEEeCccccc---C-CCCHHHHHHHhCcccCC---CCCEEEEEEeCC
Confidence 678888776552 1 34778999999999997 479999999765
No 48
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.24 E-value=0.14 Score=58.58 Aligned_cols=28 Identities=36% Similarity=0.685 Sum_probs=23.6
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccC
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDD 51 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~ 51 (565)
.+.+.|.||+|||||.|. .|.||+++.+
T Consensus 669 ~~l~~l~Qr~GRaGR~g~--~g~~ill~~~ 696 (780)
T 1gm5_A 669 FGLAQLHQLRGRVGRGGQ--EAYCFLVVGD 696 (780)
T ss_dssp SCTTHHHHHHHTSCCSST--TCEEECCCCS
T ss_pred CCHHHHHHHhcccCcCCC--CCEEEEEECC
Confidence 356889999999999985 4999999873
No 49
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=90.97 E-value=0.91 Score=50.95 Aligned_cols=171 Identities=9% Similarity=0.032 Sum_probs=108.8
Q ss_pred HHHHHHHHHhHhCCccCCC---ccchhhhhhhhhccCchhHHHHHHHhCCCC--CCChHHHHHhhhcce-eeccCCCCCC
Q 008449 373 ELKARKRVLRRLGYATSDD---VVELKGKVACEISSAEELTLTELIFNGVLK--DVKVEEMVSLLSCFV-WQEKLQDASK 446 (565)
Q Consensus 373 e~~~~~~VL~~Lgyid~~~---~vt~KGrvAceI~s~dELllTEllf~g~f~--~L~p~eiaAlLS~fV-~qek~~~~~~ 446 (565)
.+..-++.|.++|+|+.++ .+|--||.++..+- +. -.+.++..+.=. .....++..++|+.. |+ ...
T Consensus 472 ~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~-----~~~ 544 (715)
T 2va8_A 472 YFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYI-NP-FTADIIRKGLEGHKASCELAYLHLLAFTPDGP-----LVS 544 (715)
T ss_dssp HHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTC-CH-HHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSC-----CCC
T ss_pred HHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcC-CH-hHHHHHHHHhhhccCCCHHHHHHHhhcCcccc-----cCc
Confidence 5788899999999998764 79999999999875 32 233444333211 244556666555432 31 122
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcC---CCccccccccc-CCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHH
Q 008449 447 PREELELLFTQLQDTARRVAKVQLECK---VQIDVEGFVNS-FRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRR 522 (565)
Q Consensus 447 l~~~L~~~~~~l~~ia~~I~~v~~~~~---l~~~~~~~~~~-~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irR 522 (565)
..+.=...+ .+.+.+ . ...+ .++...+|... .++-..-+..+|.++.+..+|++-.++..||+......
T Consensus 545 ~r~~e~~~l---~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~ 617 (715)
T 2va8_A 545 VGRNEEEEL---IELLED---L-DCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVET 617 (715)
T ss_dssp CCHHHHHHH---HHHHTT---C-SSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cChHHHHHH---HHHHHh---c-chhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHH
Confidence 322211111 111100 0 0111 11111011110 12335667899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCc
Q 008449 523 LEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDI 557 (565)
Q Consensus 523 LdEllrqv~~Aa~~iGn~~L~~k~e~a~~~IkRDI 557 (565)
..-+++.+...|...|...+...+......|..++
T Consensus 618 a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv 652 (715)
T 2va8_A 618 MDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGI 652 (715)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999988877777776666554
No 50
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=89.86 E-value=0.22 Score=52.75 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=24.1
Q ss_pred cCHHHHHHhhccCCCCCCC-CceEEEEEccCC
Q 008449 22 ISSGEYIQMSGRAGRRGID-ERGICILMVDDK 52 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D-~~G~~ii~~~~~ 52 (565)
.++..|.|++|||||.|-. ....++.++...
T Consensus 423 ~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 423 GSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 5789999999999999965 456666666544
No 51
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=88.56 E-value=0.32 Score=57.51 Aligned_cols=30 Identities=37% Similarity=0.452 Sum_probs=23.9
Q ss_pred cCHHHHHHhhccCCCCCCC--CceEEEEEccC
Q 008449 22 ISSGEYIQMSGRAGRRGID--ERGICILMVDD 51 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D--~~G~~ii~~~~ 51 (565)
-+...|.||+|||||.|.+ +.|.++++.++
T Consensus 424 ~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d 455 (1054)
T 1gku_B 424 PDLRTYIQGSGRTSRLFAGGLTKGASFLLEDD 455 (1054)
T ss_dssp ECHHHHHHHHHTTCCEETTEECCEEEEEECSC
T ss_pred CcHHHHhhhhchhhhccCCCCceEEEEEEecC
Confidence 3789999999999996655 56788877664
No 52
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.22 E-value=0.27 Score=51.17 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=24.5
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
.++..|.|++|||||.|- |.++++....
T Consensus 448 ~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~ 475 (494)
T 1wp9_A 448 PSAIRSIQRRGRTGRHMP---GRVIILMAKG 475 (494)
T ss_dssp HHHHHHHHHHTTSCSCCC---SEEEEEEETT
T ss_pred CCHHHHHHHHhhccCCCC---ceEEEEEecC
Confidence 467899999999999996 9999888765
No 53
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.24 E-value=0.54 Score=56.08 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=30.1
Q ss_pred C-ccEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCCCceEEEEEccC
Q 008449 2 P-AKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDD 51 (565)
Q Consensus 2 P-Ar~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~ 51 (565)
| +.+||+.+.. ..+...|.||.||+||.|. .|.|+++..+
T Consensus 881 p~v~~VIi~~~~--------~~~l~~l~Qr~GRvgR~g~--~g~~~ll~~~ 921 (1151)
T 2eyq_A 881 PTANTIIIERAD--------HFGLAQLHQLRGRVGRSHH--QAYAWLLTPH 921 (1151)
T ss_dssp TTEEEEEETTTT--------SSCHHHHHHHHTTCCBTTB--CEEEEEEECC
T ss_pred cCCcEEEEeCCC--------CCCHHHHHHHHhccCcCCC--ceEEEEEECC
Confidence 5 5667765432 2466889999999999985 5999998865
No 54
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=86.20 E-value=0.4 Score=52.54 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=17.1
Q ss_pred cCHHHHHHhhccCCCCCCC
Q 008449 22 ISSGEYIQMSGRAGRRGID 40 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D 40 (565)
-++..|.||+|||||.|-|
T Consensus 528 ~s~~~~~Q~iGR~~R~~~~ 546 (590)
T 3h1t_A 528 NSMSEFKQIVGRGTRLRED 546 (590)
T ss_dssp CCHHHHHHHHTTSCCCBGG
T ss_pred CChHHHHHHHhhhcccCcc
Confidence 4789999999999999875
No 55
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=85.91 E-value=4 Score=45.76 Aligned_cols=173 Identities=13% Similarity=0.053 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhHhCCcc-CCC---ccchhhhhhhhhccCchhHHHHHHHhCCCC---CCChHHHHHhhhcce-eeccCC
Q 008449 371 KDELKARKRVLRRLGYAT-SDD---VVELKGKVACEISSAEELTLTELIFNGVLK---DVKVEEMVSLLSCFV-WQEKLQ 442 (565)
Q Consensus 371 ~~e~~~~~~VL~~Lgyid-~~~---~vt~KGrvAceI~s~dELllTEllf~g~f~---~L~p~eiaAlLS~fV-~qek~~ 442 (565)
.+.+..-++.|.++|+|+ +++ .+|--|+.+++.+- +.- .+.++....=. .....++-.++|..- |+
T Consensus 453 ~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~---- 526 (720)
T 2zj8_A 453 EEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYI-DPY-TAKMFKDKMEEVVKDPNPIGIFHLISLTPDIT---- 526 (720)
T ss_dssp HHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTC-CHH-HHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCC----
T ss_pred HHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcC-CHH-HHHHHHHHHHhhccCCCHHHHHHHhccCcccc----
Confidence 346777889999999998 654 78999999999875 322 23333322111 134446655555422 21
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHc--CCCccc--cc--cccc-CCccHHHHHHHHhCCCCHHHHHhhCCCCCCh
Q 008449 443 DASKPREELELLFTQLQDTARRVAKVQLEC--KVQIDV--EG--FVNS-FRPDIMEAVYAWAKGSKFYEIMEITPVFEGS 515 (565)
Q Consensus 443 ~~~~l~~~L~~~~~~l~~ia~~I~~v~~~~--~l~~~~--~~--~~~~-~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGs 515 (565)
.....+.=.. .+.+... +...+. .+++.. ++ |... .++-..-+.++|.++.+..+|++..++..||
T Consensus 527 -~i~~r~~e~~---~l~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gd 599 (720)
T 2zj8_A 527 -PFNYSKREFE---RLEEEYY---EFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGD 599 (720)
T ss_dssp -CCCCCHHHHH---HHHHHHH---HHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHH
T ss_pred -ccccCHHHHH---HHHHHHH---hccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHh
Confidence 1122221111 1111111 111111 122211 00 1100 1233566789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCC
Q 008449 516 LIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRD 556 (565)
Q Consensus 516 IVR~irRLdEllrqv~~Aa~~iGn~~L~~k~e~a~~~IkRD 556 (565)
+....+...-+++-+...+...|...+...+.+-+..|.-+
T Consensus 600 l~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~g 640 (720)
T 2zj8_A 600 IYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYG 640 (720)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999876666666555544433
No 56
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=85.78 E-value=6.7 Score=43.79 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhHhCCccCC--CccchhhhhhhhhccCchhHHHHHHHhCCCCC-CChHHHHHhhhcce-eeccCCCCCC
Q 008449 371 KDELKARKRVLRRLGYATSD--DVVELKGKVACEISSAEELTLTELIFNGVLKD-VKVEEMVSLLSCFV-WQEKLQDASK 446 (565)
Q Consensus 371 ~~e~~~~~~VL~~Lgyid~~--~~vt~KGrvAceI~s~dELllTEllf~g~f~~-L~p~eiaAlLS~fV-~qek~~~~~~ 446 (565)
.+.+..-++.|.++|+|+.+ ..+|--||.++..+- + --.++++..+.=.. .+..++-.++|... |+ +-+.
T Consensus 452 ~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~----~i~~ 525 (702)
T 2p6r_A 452 SYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYI-D-PLTGFIFHDVLSRMELSDIGALHLICRTPDME----RLTV 525 (702)
T ss_dssp HHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTC-C-HHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSC----CCCC
T ss_pred HHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhC-C-HHHHHHHHHHhhcccCCHHHHHHHhhCCcccc----cCCC
Confidence 44677888999999999976 689999999999874 3 33455555554332 44445555554321 21 1111
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCC-Cccc-cc--cccc-CCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHH
Q 008449 447 PREELELLFTQLQDTARRVAKVQLECKV-QIDV-EG--FVNS-FRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIR 521 (565)
Q Consensus 447 l~~~L~~~~~~l~~ia~~I~~v~~~~~l-~~~~-~~--~~~~-~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~ir 521 (565)
=+.+ . .+ .+...+ . .+++ +++. ++ |... .++-..-+..+|.+|.+..+|++-.++..||+.....
T Consensus 526 r~~e-~-~~---~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~ 595 (702)
T 2p6r_A 526 RKTD-S-WV---EEEAFR---L--RKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVE 595 (702)
T ss_dssp CTTT-H-HH---HHHHHH---H--GGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCch-H-HH---HHHHHh---c--cccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHH
Confidence 0112 1 11 111111 1 1222 2220 00 1000 1233567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCH
Q 008449 522 RLEEVLQQLILAAKSIGET 540 (565)
Q Consensus 522 RLdEllrqv~~Aa~~iGn~ 540 (565)
...-+++-+...+...|..
T Consensus 596 ~a~~l~~a~~~i~~~~g~~ 614 (702)
T 2p6r_A 596 TAEWLSNAMNRIAEEVGNT 614 (702)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCHH
Confidence 9999999998888888865
No 57
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=83.01 E-value=0.92 Score=48.33 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=28.6
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHHhcCCC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSA 66 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~~~~~~ 66 (565)
+.++..|.|+.|||+|.|-.....++.++...--.+.+..++..+.
T Consensus 422 ~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~ 467 (500)
T 1z63_A 422 WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKR 467 (500)
T ss_dssp CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCS
T ss_pred CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 3578999999999999998877777766654311344445554443
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=82.01 E-value=0.45 Score=50.95 Aligned_cols=30 Identities=23% Similarity=0.102 Sum_probs=22.7
Q ss_pred ccEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCCC
Q 008449 3 AKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDE 41 (565)
Q Consensus 3 Ar~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D~ 41 (565)
+++||+.+. +.++.+|.|++|||||.|-+.
T Consensus 417 v~~vi~~~~---------~~s~~~~~Q~~GR~gR~g~~~ 446 (510)
T 2oca_A 417 LHHVVLAHG---------VKSKIIVLQTIGRVLRKHGSK 446 (510)
T ss_dssp EEEEEESSC---------CCSCCHHHHHHHHHHTTTCCC
T ss_pred CcEEEEeCC---------CCCHHHHHHHHhcccccCCCC
Confidence 456666553 246789999999999999763
No 59
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=81.57 E-value=1.4 Score=51.53 Aligned_cols=43 Identities=16% Similarity=-0.036 Sum_probs=28.7
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHHhc
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLK 63 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~~~ 63 (565)
+.++..|.|+.||+||.|-.....++.+.....-.+.+.+++.
T Consensus 584 p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~ 626 (968)
T 3dmq_A 584 PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYH 626 (968)
T ss_dssp CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHH
T ss_pred CCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHH
Confidence 3588999999999999997755455554544322344555553
No 60
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=81.47 E-value=0.82 Score=50.94 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=20.2
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDD 51 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~ 51 (565)
+-++..|.|++|||||.| +.++++...
T Consensus 492 p~s~~~~~Qr~GRArr~g----~~~~l~~~~ 518 (699)
T 4gl2_A 492 VTNEIAMVQARGRARADE----STYVLVAHS 518 (699)
T ss_dssp CCCHHHHHHHHTTSCSSS----CEEEEEEES
T ss_pred CCCHHHHHHHcCCCCCCC----ceEEEEEeC
Confidence 358899999999998877 555555443
No 61
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=79.58 E-value=3.1 Score=36.75 Aligned_cols=66 Identities=9% Similarity=0.228 Sum_probs=52.7
Q ss_pred cCCccHHHHHHHH-hCCCCHHHHHhhCCC-CCChHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 008449 484 SFRPDIMEAVYAW-AKGSKFYEIMEITPV-FEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAV 550 (565)
Q Consensus 484 ~~~~~Lm~vVy~W-A~G~~F~eI~~~Tdv-~EGsIVR~irRLdEllrqv~~Aa~~iGn~~L~~k~e~a~ 550 (565)
.|++.+++-+.++ +.|.|+.+||...+| ..-+|=||+.+=.|+..++..| +..+...+.+.+.+..
T Consensus 12 k~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~ef~e~~~~A-r~~~~~~~~~~~~~ia 79 (140)
T 4dyq_A 12 DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKA-TEARADSIFEEIFEIA 79 (140)
T ss_dssp SCCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5788899988888 899999999999999 7999999999998888887776 3335555555554433
No 62
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=79.58 E-value=0.93 Score=48.52 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=16.9
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
+-++..|.|++|| ||. ..|.+++++...
T Consensus 481 p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~ 508 (556)
T 4a2p_A 481 SGNVTKMIQVRGR-GRA---AGSKCILVTSKT 508 (556)
T ss_dssp CSCHHHHHHC------------CCEEEEESCH
T ss_pred CCCHHHHHHhcCC-CCC---CCceEEEEEeCc
Confidence 4689999999999 987 569999998754
No 63
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=76.42 E-value=1.2 Score=44.07 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=10.9
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDD 51 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~ 51 (565)
+.+|..|.|..|||+|.|-...-.++-+...
T Consensus 193 ~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 193 WWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp CSCTTTC--------------CCEEEEEEET
T ss_pred CCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 3578999999999999998766666555544
No 64
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=75.87 E-value=4.6 Score=47.51 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=61.4
Q ss_pred eecCHHHHHHhhccCCCCCCC--CceEEEEEccCCCCHHHHHHHhcCCCCcccccCCCChHHHHHHHhcCCCCHHHHHHh
Q 008449 20 RWISSGEYIQMSGRAGRRGID--ERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRN 97 (565)
Q Consensus 20 r~l~~~E~~QM~GRAGRrg~D--~~G~~ii~~~~~~~~~~~~~~~~~~~~~l~S~f~~~~~~iL~l~~~~~~~~~~~l~~ 97 (565)
+++....|.|+.||+||.+-+ +.|.+|-+....-+...+.+...+. .+. ..++..
T Consensus 675 kpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~~~l~~Al~~y~~~-~~~----------------------~~~~~~ 731 (1038)
T 2w00_A 675 KNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAITLFGDK-NTK----------------------NVVLEK 731 (1038)
T ss_dssp SCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCHHHHHHHHHHTSCS-SHH----------------------HHHBCC
T ss_pred cCCCccceeehhhccCcCCCCCCCcEEEEEccccHHHHHHHHHHHhCC-CCc----------------------Cceehh
Confidence 357889999999999999864 5788887775321112222222221 111 112334
Q ss_pred hHHHHhhc-------CCchHHHHHHHHHHHHhh-cccccchhhHHHHHHHHHHHHHHHHHHH
Q 008449 98 SFYQFQAD-------HAIPDLEKQAKVLEEERD-SMVIEEEDSLKNYYNLLQQYKSLKKDVR 151 (565)
Q Consensus 98 sf~~~~~~-------~~~~~~~~~~~~l~~~l~-~i~~~~e~~i~~Y~~l~~~l~~~~~~~~ 151 (565)
+|-.|-.. ...++....+.++.+.+. .-.+..+.+..+|.++-+++.++...+.
T Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~f~~~f~~~~~~~~~l~ 793 (1038)
T 2w00_A 732 SYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDPTSIESEKEKKDFVKLFGEYLRAENILQ 793 (1038)
T ss_dssp CHHHHHHCEECTTTCCEECCHHHHHHHHHHHCCCSSSSCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHhhcccccccccccHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 44433321 112334446666666663 1233457778888888887776665543
No 65
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=73.97 E-value=26 Score=34.43 Aligned_cols=137 Identities=17% Similarity=0.158 Sum_probs=74.2
Q ss_pred HHHHHHHHHhHhCCccCCCccchhhhhhhhhccCchhHHHHHHHhCCCCCCCh-HHHHHhhhcceeeccCCCCCCCcHHH
Q 008449 373 ELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKV-EEMVSLLSCFVWQEKLQDASKPREEL 451 (565)
Q Consensus 373 e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~dELllTEllf~g~f~~L~p-~eiaAlLS~fV~qek~~~~~~l~~~L 451 (565)
-+.+=+..|..||-+|++|.+|.-||..+++-- |.-+---+|....|.-+++ --|||+||. ++ -..-+.+-
T Consensus 19 ~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl-~P~lakmLl~a~~~~c~~~~l~iaA~Ls~---~~----~f~~p~~~ 90 (270)
T 3i4u_A 19 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPL-EPMLCKMLIMSVHLGCSEEMLTIVSMLSV---QN----VFYRPKDK 90 (270)
T ss_dssp HHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCS-CHHHHHHHHHHHHTTCHHHHHHHHHHHTS---SC----CBCCCGGG
T ss_pred HHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCC-CHHHHHHHHHhhhcCCHHHHHHHHHHHCC---Cc----cccCCchh
Confidence 455668899999999999999999999999974 4444444444445543322 234444543 21 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHH
Q 008449 452 ELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLI 531 (565)
Q Consensus 452 ~~~~~~l~~ia~~I~~v~~~~~l~~~~~~~~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllrqv~ 531 (565)
.+ .|+ +...+......| ...+..+..+|.+...=.+-|.---+ =-|.+++..++-+|+.
T Consensus 91 ~~-------~a~-----~~~~~f~~~~sD-----~ltlLn~~~~~~~~~~~~~wC~~~fL----~~~~l~~~~~ir~QL~ 149 (270)
T 3i4u_A 91 QA-------LAD-----QKKAKFHQTEGD-----HLTLLAVYNSWKNNKFSNPWCYENFI----QARSLRRAQDIRKQML 149 (270)
T ss_dssp HH-------HHH-----HHHHTTCBTTBH-----HHHHHHHHHHHHHTTTCHHHHHHTTB----CHHHHHHHHHHHHHHH
T ss_pred HH-------HHH-----HHHHHccCCCCh-----HHHHHHHHHHHHHcCchhhHHHHhcC----CHHHHHHHHHHHHHHH
Confidence 11 111 111122112122 23577788888653322344443323 3467778888888888
Q ss_pred HHHhhcC
Q 008449 532 LAAKSIG 538 (565)
Q Consensus 532 ~Aa~~iG 538 (565)
...+-.|
T Consensus 150 ~~l~~~~ 156 (270)
T 3i4u_A 150 GIMDRHK 156 (270)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 7765333
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=73.30 E-value=16 Score=41.42 Aligned_cols=31 Identities=35% Similarity=0.419 Sum_probs=25.4
Q ss_pred eecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 20 RWISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 20 r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
++-++..|.|..||+||.|-. |.++.+++..
T Consensus 557 ~Pes~r~y~qriGRTGRqG~~--G~a~~fvsle 587 (822)
T 3jux_A 557 RHESRRIDNQLRGRAGRQGDP--GESIFFLSLE 587 (822)
T ss_dssp CCSSHHHHHHHHTTSSCSSCC--CEEEEEEETT
T ss_pred CCCCHHHHHHhhCccccCCCC--eeEEEEechh
Confidence 355789999999999999964 8888887654
No 67
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=71.64 E-value=1.8 Score=49.39 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=17.5
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
+-++..|.|++|| ||. ..|.+++++.+.
T Consensus 722 p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~ 749 (797)
T 4a2q_A 722 SGNVTKMIQVRGR-GRA---AGSKCILVTSKT 749 (797)
T ss_dssp CSCHHHHHTC-----------CCCEEEEECCH
T ss_pred CCCHHHHHHhcCC-CCC---CCceEEEEEeCC
Confidence 3588999999999 988 679999998654
No 68
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=71.46 E-value=0.76 Score=49.09 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=22.6
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
-++..|.||+|| ||. ..|.+++++.+.
T Consensus 481 ~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~ 507 (555)
T 3tbk_A 481 GNVIKMIQTRGR-GRA---RDSKCFLLTSSA 507 (555)
T ss_dssp SSCCCEECSSCC-CTT---TSCEEEEEESCH
T ss_pred CCHHHHHHhcCc-CcC---CCceEEEEEcCC
Confidence 477889999999 887 679999998754
No 69
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=67.70 E-value=5.5 Score=29.83 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=40.2
Q ss_pred ccCCccHHHHHHH-HhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHh
Q 008449 483 NSFRPDIMEAVYA-WAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAK 535 (565)
Q Consensus 483 ~~~~~~Lm~vVy~-WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllrqv~~Aa~ 535 (565)
..+++.--+++.. +..|.|+.+|.+..++.++.+=+.+.|.-.-|++.-....
T Consensus 14 ~~L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~ 67 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDD 67 (70)
T ss_dssp TSSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC------
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhccc
Confidence 4566666677765 6999999999999999999999999998888887654443
No 70
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=67.57 E-value=6.1 Score=43.80 Aligned_cols=32 Identities=13% Similarity=0.003 Sum_probs=25.9
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
+-+|..|.|+.|||+|.|-.....++-+....
T Consensus 497 ~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 497 DWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred CCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 35899999999999999988777777665543
No 71
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=63.83 E-value=1.9 Score=47.93 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=12.4
Q ss_pred cCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 22 ISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 22 l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
-++..|.|++|| ||. ..|.++++....
T Consensus 490 ~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~ 516 (696)
T 2ykg_A 490 GNVIKMIQTRGR-GRA---RGSKCFLLTSNA 516 (696)
T ss_dssp --CCCC-------------CCCEEEEEESCH
T ss_pred CCHHHHHHhhcc-CcC---CCceEEEEecCC
Confidence 456789999999 996 569999988753
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=60.94 E-value=8.8 Score=43.67 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=32.2
Q ss_pred ccEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 3 AKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 3 Ar~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
|.+||+.+. +-+|..+.|+.|||+|.|-.....++-+....
T Consensus 644 a~~VI~~D~---------~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 644 ADTVVIFDS---------DWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp CCEEEESSC---------CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred cceEEEecC---------CCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 567777664 35889999999999999988877777666543
No 73
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=60.47 E-value=5.8 Score=27.01 Aligned_cols=35 Identities=3% Similarity=-0.169 Sum_probs=30.2
Q ss_pred HHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHH
Q 008449 490 MEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLE 524 (565)
Q Consensus 490 m~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLd 524 (565)
..++..|..|.+..+|.+..++...+|-|++++..
T Consensus 12 ~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 12 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCST
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhHH
Confidence 46677789999999999999999999999887643
No 74
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=59.41 E-value=40 Score=38.84 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=25.9
Q ss_pred eecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 20 RWISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 20 r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
++-+.-.|.|..||+||.|- .|.++.+++..
T Consensus 587 ~pes~riy~qr~GRTGRqGd--pG~s~fflSle 617 (922)
T 1nkt_A 587 RHESRRIDNQLRGRSGRQGD--PGESRFYLSLG 617 (922)
T ss_dssp CCSSHHHHHHHHHTSSGGGC--CEEEEEEEETT
T ss_pred CCCCHHHHHHHhcccccCCC--CeeEEEEechh
Confidence 45688999999999999996 49998888654
No 75
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=57.79 E-value=30 Score=29.11 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=50.2
Q ss_pred cCCccHHHHHHH-HhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhc
Q 008449 484 SFRPDIMEAVYA-WAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIK 554 (565)
Q Consensus 484 ~~~~~Lm~vVy~-WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllrqv~~Aa~~iGn~~L~~k~e~a~~~Ik 554 (565)
.+.+.--+|+.. +..|.|..+|.+..++.++++=+.+.|.-.-||+.-... |..+...+.......|+
T Consensus 25 ~L~~~~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~---~~~~~~~~~~~~~~~~~ 93 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKL---ELYQKFEQRREIYDEMK 93 (113)
T ss_dssp GSCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH---hHHhHHHHHHHHHHHHH
Confidence 455666666665 489999999999999999999999999888888765443 34555555555555553
No 76
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=57.32 E-value=3.9 Score=47.53 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=17.0
Q ss_pred ecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 21 WISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 21 ~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
+-++..|.|++|| ||. ..|.+|++....
T Consensus 722 p~s~~~~iQr~GR-GR~---~~g~vi~Li~~~ 749 (936)
T 4a2w_A 722 SGNVTKMIQVRGR-GRA---AGSKCILVTSKT 749 (936)
T ss_dssp CSCSHHHHCC-----------CCCEEEEESCH
T ss_pred CCCHHHHHHhcCC-CCC---CCCEEEEEEeCC
Confidence 3588999999999 988 569999998654
No 77
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=56.43 E-value=1.1 Score=36.08 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=37.2
Q ss_pred CCccH-HHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHH
Q 008449 485 FRPDI-MEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILA 533 (565)
Q Consensus 485 ~~~~L-m~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllrqv~~A 533 (565)
+.+.+ ..+|..+..|.|..+|+...+|...+|=||+++..+.-.+.+..
T Consensus 23 ys~e~k~~~v~~~~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~~~~~~ 72 (87)
T 2elh_A 23 LTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKLRFMSRQS 72 (87)
T ss_dssp CCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHhccccccCC
Confidence 33444 46666677899999999999999999999998877655444433
No 78
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=49.46 E-value=9.2 Score=29.89 Aligned_cols=24 Identities=17% Similarity=0.506 Sum_probs=18.7
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHH
Q 008449 504 EIMEITPVFEGSLIRAIRRLEEVL 527 (565)
Q Consensus 504 eI~~~Tdv~EGsIVR~irRLdEll 527 (565)
+++..-++.||||||.++.++...
T Consensus 42 ~~Lr~LGi~eGDIIrVmk~l~~k~ 65 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVMKHLDKKF 65 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCchhhHHHHHHHHHHHh
Confidence 344555778999999999998764
No 79
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=49.43 E-value=8.3 Score=44.13 Aligned_cols=31 Identities=32% Similarity=0.397 Sum_probs=25.6
Q ss_pred eecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 20 RWISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 20 r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
++-++-.|.|+.||+||.|- .|.++.+++..
T Consensus 515 ~p~s~r~y~hr~GRTGRqG~--~G~s~~~vs~e 545 (844)
T 1tf5_A 515 RHESRRIDNQLRGRSGRQGD--PGITQFYLSME 545 (844)
T ss_dssp CCSSHHHHHHHHTTSSGGGC--CEEEEEEEETT
T ss_pred CCCCHHHHHhhcCccccCCC--CCeEEEEecHH
Confidence 45678999999999999996 59988887654
No 80
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=46.86 E-value=20 Score=28.60 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=39.7
Q ss_pred cCCccHHHHHHH-HhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHH
Q 008449 484 SFRPDIMEAVYA-WAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLIL 532 (565)
Q Consensus 484 ~~~~~Lm~vVy~-WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllrqv~~ 532 (565)
.+.+.--+|++. +..|.|+.+|.+..++.++.|=+.+.|.-.-||+.-.
T Consensus 37 ~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 455556666665 6899999999999999999999988888888876543
No 81
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=44.74 E-value=23 Score=26.56 Aligned_cols=46 Identities=13% Similarity=-0.021 Sum_probs=39.0
Q ss_pred ccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHH
Q 008449 483 NSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQ 528 (565)
Q Consensus 483 ~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllr 528 (565)
..+.+.-.+++..++.|.|..+|.+..++.++++=+.+.|+-+-|+
T Consensus 10 ~~L~~~e~~il~~~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 4577777788888999999999999999999999888888766554
No 82
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=44.16 E-value=20 Score=40.59 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhHhCCccCCCccchhhhhhhhhccCchhHHHHHHHhCCCCCCCh-HHHHHhhh
Q 008449 372 DELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKV-EEMVSLLS 433 (565)
Q Consensus 372 ~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~dELllTEllf~g~f~~L~p-~eiaAlLS 433 (565)
..+..-+..|..+|.||+++.+|.-||.++++.- +.-+---++....|.-+++ -.|||+||
T Consensus 489 ~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl-~p~~~~~l~~~~~~~c~~~~l~i~a~ls 550 (773)
T 2xau_A 489 ETMMRALEELNYLACLDDEGNLTPLGRLASQFPL-DPMLAVMLIGSFEFQCSQEILTIVAMLS 550 (773)
T ss_dssp HHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSS-CHHHHHHHHHGGGGTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcccCCCcChhhhhhccccC-CHHHHHHHHhhcccCchhHHHHHHHhcc
Confidence 4567778899999999999999999999999984 4444444444444543322 34445555
No 83
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=43.70 E-value=38 Score=28.93 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=34.7
Q ss_pred HHHHHHHcCCCcccccccccCCccHHHHHHHHh-CCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 465 VAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWA-KGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 465 I~~v~~~~~l~~~~~~~~~~~~~~Lm~vVy~WA-~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
+......+|+... .+.++..++... .|.+.++|.+...+..+++-|.+.||++
T Consensus 30 ~~~~~~~~glt~~--------q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 30 ADARLAELGLNSQ--------QGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp HHHHHHHTTCCHH--------HHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred HHHHHHHCCCCHH--------HHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 4445556776433 245666676654 6899999999999999999999999986
No 84
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=43.29 E-value=12 Score=42.88 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=25.6
Q ss_pred eecCHHHHHHhhccCCCCCCCCceEEEEEccCC
Q 008449 20 RWISSGEYIQMSGRAGRRGIDERGICILMVDDK 52 (565)
Q Consensus 20 r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~ 52 (565)
++-++-.|.|..||+||.|- .|.++.+++..
T Consensus 553 ~pes~riy~qr~GRTGRqGd--~G~s~~fls~e 583 (853)
T 2fsf_A 553 RHESRRIDNQLRGRSGRQGD--AGSSRFYLSME 583 (853)
T ss_dssp CCSSHHHHHHHHTTSSGGGC--CEEEEEEEETT
T ss_pred CCCCHHHHHhhccccccCCC--CeeEEEEeccc
Confidence 45688899999999999996 59988887643
No 85
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=42.68 E-value=21 Score=28.03 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=40.3
Q ss_pred ccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHH
Q 008449 481 FVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQ 528 (565)
Q Consensus 481 ~~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllr 528 (565)
.+..+.+.-.+|+..++.|.+..||.+..++.+++|=+.++|+-+-|+
T Consensus 18 ~~~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 18 DVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp CGGGSCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred HHccCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 345677777888888899999999999999999999888888766654
No 86
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=42.20 E-value=61 Score=25.38 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=41.6
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008449 304 ANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRS 364 (565)
Q Consensus 304 ~~~~i~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 364 (565)
..++-.+..|..+.++...|...+........|+- +.-.+-.+|..|+.+|..+..+...
T Consensus 10 ~~Lk~~d~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 10 SVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp HHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33455688899999999999888876555555554 4455556777777777777665544
No 87
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=41.37 E-value=44 Score=28.06 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHc-CCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 454 LFTQLQDTARRVAKVQLEC-KVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 454 ~~~~l~~ia~~I~~v~~~~-~l~~~~~~~~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
....+..+.+.+.....+. |+... .+.++..++. ..+.++++|.+..++..+++-|.+++|++
T Consensus 8 l~~~~~~~~~~~~~~~~~~~~l~~~--------~~~iL~~l~~-~~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 8 LLYRLKVADETISNLFEKQLGISLT--------RYSILQTLLK-DAPLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHH--------HHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHH--------HHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455555555554444 55432 1234544443 36789999999999999999999999987
No 88
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=39.13 E-value=13 Score=25.52 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHH
Q 008449 490 MEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRL 523 (565)
Q Consensus 490 m~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRL 523 (565)
-.++..|..|.+..+|++..++...+|-|++++.
T Consensus 12 ~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 12 EQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 4566668899999999999999999998887664
No 89
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=39.10 E-value=28 Score=25.09 Aligned_cols=37 Identities=11% Similarity=-0.037 Sum_probs=31.2
Q ss_pred HHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHH
Q 008449 491 EAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVL 527 (565)
Q Consensus 491 ~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEll 527 (565)
+|+..++.|.|..+|.+..++.++++=..+.|+-+-|
T Consensus 5 ~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 5 QVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4566689999999999999999999988887766555
No 90
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=38.42 E-value=1.1e+02 Score=25.71 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=27.6
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 488 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 488 ~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
.++..++.- .|.+.++|.+..++..+++-|.+.||++
T Consensus 41 ~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 41 HVLKLIDEQ-RGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp HHHHHHHHT-TTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 455555442 5789999999999999999999999987
No 91
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=38.24 E-value=77 Score=26.53 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=40.8
Q ss_pred cCCccHHHHHHH-HhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHH
Q 008449 484 SFRPDIMEAVYA-WAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILA 533 (565)
Q Consensus 484 ~~~~~Lm~vVy~-WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllrqv~~A 533 (565)
.+.+.--+|+.. +..|.|..+|.+..+++++++=+.+.|.-.-|++.-..
T Consensus 22 ~L~~~~r~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 72 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMK 72 (113)
T ss_dssp GSCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 456666676665 58999999999999999999999999988888775433
No 92
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=36.18 E-value=57 Score=27.60 Aligned_cols=52 Identities=8% Similarity=-0.043 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 465 VAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 465 I~~v~~~~~l~~~~~~~~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
+......+|+... .+.++.+++. ..|.+.++|.+..++..+++-|.+.+|++
T Consensus 20 ~~~~~~~~~lt~~--------q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 20 FDKWIGQQDLNYN--------LFAVLYTLAT-EGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp HHHHHHTTTCCHH--------HHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHH--------HHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444555666432 2345555544 35799999999999999999999999986
No 93
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=35.19 E-value=72 Score=26.92 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=31.4
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 488 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 488 ~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
.++..++....|.+..+|.+..++..+++-|.+++|++
T Consensus 39 ~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 34555554346789999999999999999999999987
No 94
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=33.54 E-value=21 Score=27.24 Aligned_cols=44 Identities=7% Similarity=-0.090 Sum_probs=35.5
Q ss_pred CCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHH
Q 008449 485 FRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQ 528 (565)
Q Consensus 485 ~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllr 528 (565)
+.+.--+|++.+..|.+..+|.+..++.++++=+.+.|.-+-|+
T Consensus 17 L~~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 44555666777789999999999999999998888887766654
No 95
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=33.24 E-value=31 Score=30.28 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=22.7
Q ss_pred cCCCCCCcEEEEecCCCCCCCCCCCCCCccceEEEEEeeee
Q 008449 161 LPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEK 201 (565)
Q Consensus 161 ~~~L~~GRlV~i~~~~~~~~~~~~~~~~~~~~~gvvv~~~~ 201 (565)
.+|+.+||||.+..| .....+++||+..+
T Consensus 4 ~rfvevGRVV~i~~G------------r~aGk~avIV~iiD 32 (134)
T 3iz5_N 4 KRFVEIGRVALVNYG------------KDYGRLVVIVDVVD 32 (134)
T ss_dssp CCSCCSSEEEECSCC------------SSSCCEEEEEEECS
T ss_pred ccccccCeEEEEeeC------------CCCCCEEEEEEEcC
Confidence 478999999999887 33456999998644
No 96
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=33.17 E-value=54 Score=28.03 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=30.4
Q ss_pred ccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 487 PDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 487 ~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
+.++.+++.--.+.+.++|.+...+..+++-|.+.||++
T Consensus 42 ~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 42 YSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp HHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 345555543333569999999999999999999999976
No 97
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=32.89 E-value=30 Score=29.16 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=31.5
Q ss_pred ccHHHHHHHHh-CCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 487 PDIMEAVYAWA-KGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 487 ~~Lm~vVy~WA-~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
+.++..++..- .|.+.++|.+..++..+++-|.+.||++
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 34555555443 3789999999999999999999999986
No 98
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=32.76 E-value=11 Score=23.39 Aligned_cols=10 Identities=60% Similarity=0.966 Sum_probs=7.6
Q ss_pred hhccCCCCCC
Q 008449 30 MSGRAGRRGI 39 (565)
Q Consensus 30 M~GRAGRrg~ 39 (565)
-+||+|||.-
T Consensus 8 ~~~RtGRRNA 17 (26)
T 1cmk_I 8 ASGRTGRRNA 17 (26)
T ss_pred hcCccccccc
Confidence 3789999853
No 99
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=32.68 E-value=78 Score=27.66 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=29.2
Q ss_pred ccHHHHHHHH-hCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 487 PDIMEAVYAW-AKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 487 ~~Lm~vVy~W-A~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
+.++.+++.. -.|.+.++|.+...+..+++-|.+.||++
T Consensus 49 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 49 YNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp HHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3456555554 35899999999999999999999999986
No 100
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=32.47 E-value=36 Score=29.21 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=38.4
Q ss_pred CCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHH
Q 008449 485 FRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLIL 532 (565)
Q Consensus 485 ~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllrqv~~ 532 (565)
+.+.--.|+..+..|.|+.||.+..++.++.+=+.+.|.-.-||+.-.
T Consensus 110 L~~~~r~v~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 110 FSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344444556568899999999999999999998888888777776544
No 101
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=31.77 E-value=43 Score=26.92 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=38.2
Q ss_pred ccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHH
Q 008449 483 NSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQ 528 (565)
Q Consensus 483 ~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllr 528 (565)
..+.+.-.+|+...+.|.+..+|.+..++.+++|=..+.|.-.-|+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4566777788888899999999999999999999888888766664
No 102
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=30.86 E-value=69 Score=28.89 Aligned_cols=68 Identities=7% Similarity=0.030 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCccHHHHHHHH-hCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 452 ELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAW-AKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 452 ~~~~~~l~~ia~~I~~v~~~~~l~~~~~~~~~~~~~~Lm~vVy~W-A~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
.+.+..+..++.++.......--+++. -.+.++.+++.. -.|.+.++|.+...+.-+++-|.+.+|++
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~lt~------~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 15 NQTYATLFTLTNKIQIEGDKYFGILTS------RQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSCH------HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCH------HHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555666666655443332112222 123445555444 34799999999999999999999999976
No 103
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=30.79 E-value=29 Score=24.99 Aligned_cols=33 Identities=30% Similarity=0.628 Sum_probs=23.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHh---------hcCCccccc
Q 008449 527 LQQLILAAKSIGETELEAKFEEAVSK---------IKRDIVFAA 561 (565)
Q Consensus 527 lrqv~~Aa~~iGn~~L~~k~e~a~~~---------IkRDIVfa~ 561 (565)
|-||.+=+ |+||..+++|+.-+.. |||||+=+|
T Consensus 7 l~~l~kdC--i~np~~r~~Fe~ki~~~~tE~q~k~iKr~IIRsA 48 (49)
T 3bbz_A 7 ITKMITDS--VANPQMKQAFEQRLAKASTEDALNDIKRDIIRSA 48 (49)
T ss_dssp HHHHHHHH--CCSHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 44554444 6899999999877654 778887443
No 104
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=30.70 E-value=33 Score=27.25 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=39.4
Q ss_pred cccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHH
Q 008449 482 VNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQ 528 (565)
Q Consensus 482 ~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllr 528 (565)
+..+.+.-.+|+..++.|.+..+|.+..++.+++|=..+.|.-.-|+
T Consensus 27 l~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGGCCSHHHHHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 45677777888888899999999999999999999888887766554
No 105
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=30.52 E-value=37 Score=29.92 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=23.5
Q ss_pred ccCCCCCCcEEEEecCCCCCCCCCCCCCCccceEEEEEeeee
Q 008449 160 CLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEK 201 (565)
Q Consensus 160 ~~~~L~~GRlV~i~~~~~~~~~~~~~~~~~~~~~gvvv~~~~ 201 (565)
..+|+.+||||.+..| .....+++|++..+
T Consensus 11 f~rfve~GrVV~i~~G------------r~aGk~avIV~iiD 40 (138)
T 3izc_N 11 NWRLVEVGRVVLIKKG------------QSAGKLAAIVEIID 40 (138)
T ss_dssp CCCCSSTTEEEECCSC------------SSSCCEEEEEEECS
T ss_pred hhhhcccCeEEEEeeC------------CCCCCEEEEEEEec
Confidence 4679999999999887 33456999998644
No 106
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=29.76 E-value=64 Score=27.16 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=31.1
Q ss_pred ccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 487 PDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 487 ~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
+.++.+++ ..|.+.++|.+..++..+++-|.+++|++
T Consensus 40 ~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 40 FLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp HHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34555554 67789999999999999999999999987
No 107
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=29.48 E-value=55 Score=27.40 Aligned_cols=37 Identities=8% Similarity=0.035 Sum_probs=29.3
Q ss_pred HHHHHHHHhC-CCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 489 IMEAVYAWAK-GSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 489 Lm~vVy~WA~-G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
++.+++.-.. |.+..+|.+..++..+.+-|.++||++
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 4444443221 589999999999999999999999987
No 108
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=29.45 E-value=79 Score=26.51 Aligned_cols=37 Identities=11% Similarity=0.307 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHH
Q 008449 489 IMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEV 526 (565)
Q Consensus 489 Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEl 526 (565)
++..++. ..+.+..+|.+...+..+++-|.+++|++-
T Consensus 42 iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 2bv6_A 42 VLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp HHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHHHHT
T ss_pred HHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 4444433 245799999999999999999999999873
No 109
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=29.22 E-value=45 Score=28.83 Aligned_cols=53 Identities=19% Similarity=0.121 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCcccccccccCCccHHHHHHHHhCC-CCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 465 VAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKG-SKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 465 I~~v~~~~~l~~~~~~~~~~~~~~Lm~vVy~WA~G-~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
+......+||... .+.++.+++.|-.| .+.++|.+...+.-+++-|.+.||++
T Consensus 24 ~~~~l~~~gLt~~--------q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 24 VDAVVKPYGLTFA--------RYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp HHHHHGGGTCCHH--------HHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHH--------HHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444556676443 24456666767554 79999999999999999999999976
No 110
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=28.91 E-value=26 Score=31.07 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=32.3
Q ss_pred ccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 487 PDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 487 ~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
+.++.+++....|.+.++|.+...+..+++-|.+.||++
T Consensus 56 ~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 56 WVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp HHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 345555655556789999999999999999999999986
No 111
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=28.43 E-value=76 Score=23.78 Aligned_cols=47 Identities=6% Similarity=-0.015 Sum_probs=37.3
Q ss_pred cccCCccHHHHHHHHh-----CCCCHHHHHhhCCCCCChHHHHHHHHHHHHH
Q 008449 482 VNSFRPDIMEAVYAWA-----KGSKFYEIMEITPVFEGSLIRAIRRLEEVLQ 528 (565)
Q Consensus 482 ~~~~~~~Lm~vVy~WA-----~G~~F~eI~~~Tdv~EGsIVR~irRLdEllr 528 (565)
+..+++.--+|+.... .|.|+.||-+..++.++.+=+.+.|.-.-|+
T Consensus 8 l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 8 LSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4456666666665543 8999999999999999999988888877776
No 112
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=28.39 E-value=66 Score=25.43 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=31.1
Q ss_pred ccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHH
Q 008449 487 PDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEV 526 (565)
Q Consensus 487 ~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEl 526 (565)
..++..+.. ..+.++.+|.+.+++..+++-|.+++|.+-
T Consensus 23 ~~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 23 VRIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp HHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 345555533 467899999999999999999999999763
No 113
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=28.23 E-value=90 Score=25.86 Aligned_cols=37 Identities=8% Similarity=0.239 Sum_probs=29.9
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 488 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 488 ~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
.++..++. ..|.+..+|.+..++..+++-|.+++|++
T Consensus 37 ~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 37 GVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred HHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 34544433 34579999999999999999999999987
No 114
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=27.54 E-value=47 Score=28.03 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=31.5
Q ss_pred ccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 487 PDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 487 ~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
+.++..++. ..|.++++|.+..++..+++-|.+++|++
T Consensus 36 ~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 36 FDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp HHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 345555554 46789999999999999999999999986
No 115
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=27.27 E-value=34 Score=29.04 Aligned_cols=38 Identities=18% Similarity=0.011 Sum_probs=31.9
Q ss_pred ccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 487 PDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 487 ~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
+.++.+++.. .|.+.++|.+..++..+++-|.+.+|++
T Consensus 40 ~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 40 WSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp HHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 3456666554 7889999999999999999999999986
No 116
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=27.00 E-value=90 Score=27.08 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhCCc----cCCC------ccchhhhhhhhhccCchhHHHHHHHhCCCCCCChHHHHHhhhcc
Q 008449 371 KDELKARKRVLRRLGYA----TSDD------VVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCF 435 (565)
Q Consensus 371 ~~e~~~~~~VL~~Lgyi----d~~~------~vt~KGrvAceI~s~dELllTEllf~g~f~~L~p~eiaAlLS~f 435 (565)
.+..-+.++-|.+-||| |+++ .+|.||+-..+-- .-...-+.+.+|.+|+++|+..+...+
T Consensus 60 ~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~----~~~~~~~~~~~~~~l~~ee~~~l~~~L 130 (151)
T 4aik_A 60 QPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQV----DGVISSTRKEILGGISSDEIAVLSGLI 130 (151)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHH
No 117
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=26.74 E-value=53 Score=24.31 Aligned_cols=47 Identities=6% Similarity=-0.033 Sum_probs=36.6
Q ss_pred ccCCccHHHHHHHHh-----CCCCHHHHHhhCCCCCChHHHHHHHHHHHHHH
Q 008449 483 NSFRPDIMEAVYAWA-----KGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQ 529 (565)
Q Consensus 483 ~~~~~~Lm~vVy~WA-----~G~~F~eI~~~Tdv~EGsIVR~irRLdEllrq 529 (565)
..+++.--+|+.... .|.|+.||-+..+++++.+=+.+.|.-.-||.
T Consensus 4 ~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 4 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred HcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 345566666666655 89999999999999999988888877666554
No 118
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=26.18 E-value=52 Score=27.73 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=37.5
Q ss_pred HHHHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 465 VAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 465 I~~v~~~~~l~~~~~~~~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
+......+|+... ...++.+++.-..|.+.++|.+.+++..+++-|.+.+|++
T Consensus 15 ~~~~~~~~gl~~~--------~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 15 FSELAKIHGLNKS--------VGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp HHHHHHHTTCCHH--------HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChh--------HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4445566776433 1235555532236789999999999999999999999876
No 119
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=25.66 E-value=56 Score=27.44 Aligned_cols=53 Identities=9% Similarity=0.165 Sum_probs=37.3
Q ss_pred HHHHHHHcCCCcccccccccCCccHHHHHHHHh-CCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 465 VAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWA-KGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 465 I~~v~~~~~l~~~~~~~~~~~~~~Lm~vVy~WA-~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
.......+|+... .+.++..++... .|.+..+|.+...+.-+++-|.+.||++
T Consensus 26 ~~~~~~~~~lt~~--------q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 26 KSLIKKEFSISFE--------EFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp HHHHHHTTCCCHH--------HHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHH--------HHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444555666432 233555554421 5689999999999999999999999987
No 120
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=25.37 E-value=74 Score=28.29 Aligned_cols=40 Identities=25% Similarity=0.229 Sum_probs=31.8
Q ss_pred ccHHHHHHHHhC--CCCHHHHHhhCCCCCChHHHHHHHHHHH
Q 008449 487 PDIMEAVYAWAK--GSKFYEIMEITPVFEGSLIRAIRRLEEV 526 (565)
Q Consensus 487 ~~Lm~vVy~WA~--G~~F~eI~~~Tdv~EGsIVR~irRLdEl 526 (565)
+.++.+++.--. |.+.++|.+...+..+++-|.+.||++-
T Consensus 72 ~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 113 (181)
T 2fbk_A 72 WDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK 113 (181)
T ss_dssp HHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 445555555333 3899999999999999999999999873
No 121
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=25.26 E-value=59 Score=27.59 Aligned_cols=37 Identities=8% Similarity=0.016 Sum_probs=30.6
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 488 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 488 ~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
.++.+++. ..|.++.+|.+..++..+++-|.+++|++
T Consensus 46 ~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 46 VALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp HHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 34555544 46789999999999999999999999986
No 122
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=25.10 E-value=1.7e+02 Score=25.03 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 448 REELELLFTQLQDTARR-VAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 448 ~~~L~~~~~~l~~ia~~-I~~v~~~~~l~~~~~~~~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
...+...+..+.....+ +......+|+... .+.++.+++. ..|.+.++|.+...+..+++-|.+.+|++
T Consensus 21 ~~~l~~~l~~~~~~~~~~~~~~l~~~~lt~~--------q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 21 KEFIGKAISYLYRYGQIYIGKKIEPYGIGSG--------QFPFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHGGGTCCTT--------THHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--------HHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444333333 3334445566432 2345555543 36689999999999999999999999986
No 123
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=24.96 E-value=2e+02 Score=21.92 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008449 109 PDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRD 152 (565)
Q Consensus 109 ~~~~~~~~~l~~~l~~i~~~~e~~i~~Y~~l~~~l~~~~~~~~~ 152 (565)
..+..++.++..++.+++..+ .+..|.+++.++.++..++..
T Consensus 9 ~~l~~E~~~lk~E~~stSaQD--eFAKWaKL~Rk~DKl~~ele~ 50 (65)
T 3sja_C 9 LAKVKERHELKEFNNSISAQD--NYAKWTKNNRKLDSLDKEINN 50 (65)
T ss_dssp HHHHHHHHHHHHHHTTSCTTT--THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 356778888999998887654 567888888888777777654
No 124
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.76 E-value=46 Score=26.65 Aligned_cols=26 Identities=19% Similarity=0.297 Sum_probs=19.9
Q ss_pred CCCCCCcEEEEecCCCCCCCCCCCCCCccceEEEEEee
Q 008449 162 PFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEF 199 (565)
Q Consensus 162 ~~L~~GRlV~i~~~~~~~~~~~~~~~~~~~~~gvvv~~ 199 (565)
.|+.+||||.+..| .....+++|++.
T Consensus 2 ~~~~~Grvv~~~~G------------r~~Gk~~vIv~i 27 (83)
T 3j21_5 2 PAIDVGRIAVVIAG------------RRAGQKVVVVDI 27 (83)
T ss_dssp -CCCTTEEEECSSS------------SSSCCCEEEEEE
T ss_pred CccccCEEEEEeec------------CCCCCEEEEEEE
Confidence 48899999999887 234468899875
No 125
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.69 E-value=1.5e+02 Score=21.36 Aligned_cols=35 Identities=17% Similarity=0.370 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhchhc--chhHHHHHHHHHHHhHhC
Q 008449 351 LTAKIKSIKRQMRSSTE--LAFKDELKARKRVLRRLG 385 (565)
Q Consensus 351 l~~~~~~l~~~l~~~~~--l~~~~e~~~~~~VL~~Lg 385 (565)
|+.+-..|++++++..+ ..+-.|--+|+.||++|+
T Consensus 15 Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 15 LKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 44444445555544111 114456778899998875
No 126
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=24.59 E-value=61 Score=26.54 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 490 MEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 490 m~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
..++..+..|.|..+|++..++...+|-||++|..+
T Consensus 24 ~~i~~~~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 24 LKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 345556678999999999999999999999988654
No 127
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=24.33 E-value=85 Score=26.98 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=31.4
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHH
Q 008449 488 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEV 526 (565)
Q Consensus 488 ~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEl 526 (565)
.++..++. ..|.+..+|.+..++..+++-|.+++|++-
T Consensus 53 ~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 53 RVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp HHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 45555554 467899999999999999999999999873
No 128
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=23.97 E-value=61 Score=27.74 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=31.3
Q ss_pred ccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 487 PDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 487 ~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
+.++.+++.. .|.+.++|.+...+..+++-|.+.||++
T Consensus 44 ~~iL~~l~~~-~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 44 YLVMLTLWEE-NPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp HHHHHHHHHS-SSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455555543 6789999999999999999999999986
No 129
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=23.84 E-value=1.7e+02 Score=28.01 Aligned_cols=123 Identities=10% Similarity=0.071 Sum_probs=68.9
Q ss_pred HHHHHHHHHhHhCCccC----CC------ccchhhhhhhhhccCchhHHHHHHHhCCCCCCChHHHHHhhhcceeeccCC
Q 008449 373 ELKARKRVLRRLGYATS----DD------VVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQ 442 (565)
Q Consensus 373 e~~~~~~VL~~Lgyid~----~~------~vt~KGrvAceI~s~dELllTEllf~g~f~~L~p~eiaAlLS~fV~qek~~ 442 (565)
..-..++=|.+.|||.- .+ .+|.||+-..+--. +++.+.+..+--+ .-+
T Consensus 66 t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~--------------------~~~~~~~eq~s~E-~~~ 124 (250)
T 1p4x_A 66 DLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERV--------------------TLFDQIIKQFNLA-DQS 124 (250)
T ss_dssp GTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHH--------------------HHHHHHHHHHHHH-TTC
T ss_pred hHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHHH--------------------HHHHHHHHHHhcc-ccc
Confidence 44567888999999942 22 38999987432210 1111111111111 000
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCccHHHHHHHHhC---CCCHHHHHhhCCCCCChHHHH
Q 008449 443 DASKPREELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAK---GSKFYEIMEITPVFEGSLIRA 519 (565)
Q Consensus 443 ~~~~l~~~L~~~~~~l~~ia~~I~~v~~~~~l~~~~~~~~~~~~~~Lm~vVy~WA~---G~~F~eI~~~Tdv~EGsIVR~ 519 (565)
-.+-++-.+...+.....+......+...+||... .+.++. +-|.+ |.+.++|.+...+..+++.|.
T Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gLt~~--------q~~vL~--~L~~~~~~~~t~~eLa~~l~i~~~tvt~~ 194 (250)
T 1p4x_A 125 ESQMIPKDSKEFLNLMMYTMYFKNIIKKHLTLSFV--------EFTILA--IITSQNKNIVLLKDLIETIHHKYPQTVRA 194 (250)
T ss_dssp CSSCSCCSHHHHHHHHHHHHHHHHHHHHHCSSCHH--------HHHHHH--HHHTTTTCCEEHHHHHHHSSSCHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCHH--------HHHHHH--HHHhCCCCCcCHHHHHHHHCCChhhHHHH
Confidence 01122333444433333344444556667887543 123333 34544 379999999999999999999
Q ss_pred HHHHHHH
Q 008449 520 IRRLEEV 526 (565)
Q Consensus 520 irRLdEl 526 (565)
+.||++-
T Consensus 195 v~rLe~~ 201 (250)
T 1p4x_A 195 LNNLKKQ 201 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
Confidence 9999863
No 130
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=23.29 E-value=86 Score=26.41 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=29.9
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHH
Q 008449 488 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEV 526 (565)
Q Consensus 488 ~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEl 526 (565)
.++..+ |..|.++++|.+..++..+++-|.+.+|++-
T Consensus 41 ~iL~~l--~~~~~~~~~la~~l~~~~~tvs~~l~~Le~~ 77 (144)
T 3f3x_A 41 SILKAT--SEEPRSMVYLANRYFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp HHHHHH--HHSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHH--HHCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 344444 4455599999999999999999999999873
No 131
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=23.05 E-value=70 Score=26.66 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHH
Q 008449 489 IMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEV 526 (565)
Q Consensus 489 Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEl 526 (565)
++..++. ..|.+..+|.+..++..+++-|.+++|++-
T Consensus 39 iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 39 VLCSIRC-AACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp HHHHHHH-HSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-cCCCCHHHHHHHHCCChHHHHHHHHHHHHC
Confidence 4444433 357899999999999999999999999873
No 132
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.00 E-value=78 Score=26.54 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=29.9
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 488 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 488 ~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
.++..++.-..|.+..+|.+..++..+++-|.+++|++
T Consensus 41 ~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 41 LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 34444432245679999999999999999999999986
No 133
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.93 E-value=68 Score=26.20 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=38.6
Q ss_pred ccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHH
Q 008449 483 NSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVL 527 (565)
Q Consensus 483 ~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEll 527 (565)
..+.+.-.+|+..++.|.+..||.+..++.+++|=..+.|+-+-|
T Consensus 33 ~~Lt~re~~Vl~l~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 457888889999999999999999999999999988877765544
No 134
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=22.77 E-value=66 Score=27.06 Aligned_cols=37 Identities=32% Similarity=0.291 Sum_probs=29.6
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 488 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 488 ~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
.++..++. ..|.++++|.+...+..+++-|.+.||++
T Consensus 33 ~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le~ 69 (144)
T 1lj9_A 33 LYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLEE 69 (144)
T ss_dssp HHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 34444433 24679999999999999999999999987
No 135
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=22.47 E-value=1.2e+02 Score=25.77 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=37.7
Q ss_pred HHHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 466 AKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 466 ~~v~~~~~l~~~~~~~~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
......+|+... .+.++.++ =..|.+.++|.+...+.-+++-|.+.||++
T Consensus 28 ~~~~~~~~lt~~--------q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 77 (151)
T 3kp7_A 28 KDLQTEYGISAE--------QSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLN 77 (151)
T ss_dssp HHHHHHHTCCHH--------HHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCHH--------HHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455666432 24466666 357899999999999999999999999986
No 136
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=22.37 E-value=70 Score=27.31 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=29.6
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 488 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 488 ~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
.++.+++. ..|.+.++|.+...+..+++-|.+.+|++
T Consensus 45 ~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 45 AMINVIYS-TPGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp HHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444433 34579999999999999999999999987
No 137
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=22.37 E-value=44 Score=26.65 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=29.9
Q ss_pred HHHHHHHHhCC---CCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 489 IMEAVYAWAKG---SKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 489 Lm~vVy~WA~G---~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
++..++....| .+..+|.+..++.-+++-|.+.+|++
T Consensus 17 iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 17 ILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp HHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444443455 89999999999999999999999986
No 138
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=22.23 E-value=2.1e+02 Score=24.73 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=30.6
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 488 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 488 ~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
.++..++. ..|.+.++|.+..++..+++-|.+.+|++
T Consensus 49 ~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 85 (168)
T 2nyx_A 49 RTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVG 85 (168)
T ss_dssp HHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 35555544 35789999999999999999999999976
No 139
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=21.86 E-value=72 Score=27.30 Aligned_cols=28 Identities=4% Similarity=0.222 Sum_probs=25.9
Q ss_pred CCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 498 KGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 498 ~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
.|.+..+|.+..++..+++-|.+.+|++
T Consensus 56 ~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4679999999999999999999999986
No 140
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=21.40 E-value=1.2e+02 Score=26.30 Aligned_cols=51 Identities=8% Similarity=0.010 Sum_probs=37.2
Q ss_pred HHHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 466 AKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 466 ~~v~~~~~l~~~~~~~~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
......+|+... .+.++.+++. ..|.+.++|.+...+..+++-|.+.||++
T Consensus 36 ~~~l~~~glt~~--------q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 36 TEHLSALEISLP--------QFTALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp HHHHHTTTCCHH--------HHHHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHhhhcCCCHH--------HHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455666432 2345555544 35789999999999999999999999976
No 141
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=21.39 E-value=50 Score=28.64 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=23.1
Q ss_pred cCCCCCCcEEEEecCCCCCCCCCCCCCCccceEEEEEeeeec
Q 008449 161 LPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKV 202 (565)
Q Consensus 161 ~~~L~~GRlV~i~~~~~~~~~~~~~~~~~~~~~gvvv~~~~~ 202 (565)
..|..+|||+.+..| ......++||+.-+.
T Consensus 4 ~rfvevGRVv~i~~G------------~~aGklavIVdIID~ 33 (126)
T 4a18_F 4 NKFVQVGRVVYINYG------------ADKGKLAVIVNIINQ 33 (126)
T ss_dssp CCEEETTEEEEECSS------------TTTTEEEEEEEEETT
T ss_pred ccceecceEEEEccC------------CccCCEEEEEEEecC
Confidence 468899999999887 344569999986443
No 142
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=21.37 E-value=1.3e+02 Score=25.35 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhHhCCccCC----------CccchhhhhhhhhccCchhHHHHHHHhCCCCCCChHHHHHhhhcc
Q 008449 372 DELKARKRVLRRLGYATSD----------DVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCF 435 (565)
Q Consensus 372 ~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~dELllTEllf~g~f~~L~p~eiaAlLS~f 435 (565)
+..-+.++-|.+-|||.-. -.+|.+|+-..+-.. -..+-+.+.+|.+++++|+..+...+
T Consensus 72 ~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 141 (148)
T 3jw4_A 72 ASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFN----NIFLEVEESITKGLTKDEQKQLMSIL 141 (148)
T ss_dssp -CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHH----HHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3556778999999999642 148999987765431 12445567788999999998887654
No 143
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=21.08 E-value=1.7e+02 Score=24.86 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=30.6
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHH
Q 008449 488 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEV 526 (565)
Q Consensus 488 ~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEl 526 (565)
.++.+++.=-.|.+.++|.+..++..+++-|.+.+|++-
T Consensus 51 ~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~ 89 (160)
T 3boq_A 51 DAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD 89 (160)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 355555311357899999999999999999999999873
No 144
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=21.04 E-value=75 Score=27.31 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 490 MEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 490 m~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
..++..+..|.+..+|++..++...+|-||++|..+
T Consensus 39 ~~iv~~~~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 39 QRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 556666778999999999999999999999988654
No 145
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=20.95 E-value=77 Score=25.95 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=32.2
Q ss_pred CCccHHHHHHHHhCCCCHHHHHhhCC----CCCChHHHHHHHHHH
Q 008449 485 FRPDIMEAVYAWAKGSKFYEIMEITP----VFEGSLIRAIRRLEE 525 (565)
Q Consensus 485 ~~~~Lm~vVy~WA~G~~F~eI~~~Td----v~EGsIVR~irRLdE 525 (565)
..+.+|.++++ ..|.+-.||.+... +..++|-|.+.||++
T Consensus 36 ~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 36 AELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp SCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 34568888866 45789999999975 467999999999986
No 146
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=20.39 E-value=94 Score=26.11 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhHhCCccC-----CC-----ccchhhhhhhhhccCchhHHHHHHHhCCCCCCChHHHHHhhhcc
Q 008449 371 KDELKARKRVLRRLGYATS-----DD-----VVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCF 435 (565)
Q Consensus 371 ~~e~~~~~~VL~~Lgyid~-----~~-----~vt~KGrvAceI~s~dELllTEllf~g~f~~L~p~eiaAlLS~f 435 (565)
.+..-+.++-|.+.|||.. |. .+|.+|+-+.+-.. -...-+++.+|.+++++|+..+...+
T Consensus 65 ~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 135 (143)
T 3oop_A 65 TPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELR----DIVEASCEKMFAGVTRTDLEQFTAIL 135 (143)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3567788999999999963 21 48999998775431 22344566678899999998876654
No 147
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=20.38 E-value=71 Score=26.94 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHH
Q 008449 489 IMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEV 526 (565)
Q Consensus 489 Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEl 526 (565)
++..++. ..|.+.++|.+...+..+++-|.+++|++-
T Consensus 45 iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 45 ALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp HHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 4444433 357899999999999999999999999874
No 148
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=20.15 E-value=77 Score=26.31 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=30.1
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 008449 488 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 525 (565)
Q Consensus 488 ~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdE 525 (565)
.++..++. ..|.+.++|.+..++..+++-|.+++|++
T Consensus 33 ~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~~ 69 (138)
T 3bpv_A 33 ACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLEE 69 (138)
T ss_dssp HHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444443 36789999999999999999999999986
No 149
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=20.02 E-value=51 Score=23.16 Aligned_cols=32 Identities=19% Similarity=0.032 Sum_probs=26.0
Q ss_pred HHHHHHhCCCCHHHHHhhCCCCCChHHHHHHH
Q 008449 491 EAVYAWAKGSKFYEIMEITPVFEGSLIRAIRR 522 (565)
Q Consensus 491 ~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irR 522 (565)
.+...+..|.|..+|.+..++...+|=|.+++
T Consensus 23 ~i~~l~~~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 23 VAHELAKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 33444689999999999999999998887754
Done!