BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008450
(565 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter.
pdb|2XUT|B Chain B, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter.
pdb|2XUT|C Chain C, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter
Length = 524
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 111/462 (24%), Positives = 191/462 (41%), Gaps = 59/462 (12%)
Query: 24 ELCERLSTMGIAVNLVTYLVGTM------HLPSATSANIVTDFMGTSFLLCLLGGFLADT 77
E CER S G+ L +L+ + L A + ++ F+ + LLGG++AD
Sbjct: 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR 80
Query: 78 FLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALY 137
F G+Y TI + + +G LA+ H+ + GF Y L+
Sbjct: 81 FFGKYNTILWLSLIYCVGHAFLAIFE---------------HSVQ---GF-----YTGLF 117
Query: 138 LIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXXXXISLGTLMAVTVLVYIQDE 197
LIALG+GG+K VS F DQFD+ + K Q A+ I+ G+ A + +
Sbjct: 118 LIALGSGGIKPLVSSFMGDQFDQSN-KSLAQKAF--DMFYFTINFGSFFASLSMPLLLKN 174
Query: 198 ISRSVGYGICSVAMFMAIIIFLAGTKRYRY-KKSSGSPIVHIFQVIVAAIKKRKMDLPCN 256
+V +GI V MF+A + F G KRY + P H F ++ + K++ N
Sbjct: 175 FGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDP--HGFLPVIRSALLTKVEGKGN 232
Query: 257 VGMLYEDTPEASRIHHTEQFHFLDKAA------IVAEGDFEAGST---PNPWKLCSVTSV 307
+G++ S + L A ++ G AG++ K +V
Sbjct: 233 IGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAV 292
Query: 308 EEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAIL 367
+ V+ V R+L ++A FW+ + Q + + QA M + +F A++
Sbjct: 293 DGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP------------QWFEPAMM 340
Query: 368 ITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLT 427
L + L++ L + + ++RM + L A A+ + V +
Sbjct: 341 QAL---NPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM 397
Query: 428 TATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 469
+S+F I + L+ GE + L+F +++PK MK
Sbjct: 398 DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439
>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In
An Inward Open Conformation.
pdb|4APS|B Chain B, Crystal Structure Of A Pot Family Peptide Transporter In
An Inward Open Conformation
Length = 491
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 90/410 (21%), Positives = 161/410 (39%), Gaps = 97/410 (23%)
Query: 24 ELCERLSTMGIAVNLVTYL-----VGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF 78
E+ ER S G+ L+ Y+ G +H+ AT+A+I+ + +L +GGF+AD
Sbjct: 22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRI 81
Query: 79 LGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYL 138
+G A+F G+L M+ + P F L+ ++ L
Sbjct: 82 IGARP--AVFWG------GVLIMLGHIVLALP----------------FGASALFGSIIL 117
Query: 139 IALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXXXXISLGTLMAVTVLVYIQDEI 198
I +GTG LK +VS +DE D + + I+LG +A ++ Q+
Sbjct: 118 IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFS----IFVFGINLGAFIAPLIVGAAQEAA 173
Query: 199 SRSVGYGICSVAMFMAIIIFLAGTKR-----YRYKKSSGSP-------------IVHIFQ 240
V + + ++ MF+ ++++ G K+ Y +P +
Sbjct: 174 GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIA 233
Query: 241 VIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWK 300
+IV LP + +L T A I F+F W
Sbjct: 234 IIVVMNLVGWNSLPAYINLL---TIVAIAI---PVFYF-------------------AWM 268
Query: 301 LCS--VTSVEEVKMVARLLPIWATTIIFWTTYAQ----MITFSVEQATTMERSIGRFQIP 354
+ S VTS E +++V+ +P++ ++FW Q + TF+ E+ + + FQ
Sbjct: 269 ISSVKVTSTEHLRVVSY-IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQ-- 325
Query: 355 AGSLTVFFVSAILITLAVYDRLIMPLWKKW-KGKPGFTNLQRMAIGLVLS 403
SL F+ +Y LW W K +P ++ + A+GL+ +
Sbjct: 326 --SLNPLFI-------MLYTPFFAWLWTAWKKNQP--SSPTKFAVGLMFA 364
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 112 PCKETATHTCEQASGFQMGVLYIAL-YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 170
P KE + Q G G++ AL YLIA G G ++ SGF ++ + E + ++
Sbjct: 80 PAKEVVGYVIAQVVG---GIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 136
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 112 PCKETATHTCEQASGFQMGVLYIAL-YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 170
P KE + Q G G++ AL YLIA G G ++ SGF ++ + E + ++
Sbjct: 80 PAKEVVGYVIAQVVG---GIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 136
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 112 PCKETATHTCEQASGFQMGVLYIAL-YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 170
P KE + Q G G++ AL YLIA G G ++ SGF ++ + E + ++
Sbjct: 80 PAKEVVGYVIAQVVG---GIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 136
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 112 PCKETATHTCEQASGFQMGVLYIAL-YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 170
P KE + Q G G++ AL YLIA G G ++ SGF ++ + E + ++
Sbjct: 80 PAKEVVGYVIAQVVG---GIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 136
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 112 PCKETATHTCEQASGFQMGVLYIAL-YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 170
P KE + Q G G++ AL YLIA G G ++ SGF ++ + E + ++
Sbjct: 80 PAKEVVGYVIAQVVG---GIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 136
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 112 PCKETATHTCEQASGFQMGVLYIAL-YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 170
P KE + Q G G++ AL YLIA G G ++ SGF ++ + E + ++
Sbjct: 77 PAKEVVGYVIAQVVG---GIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 133
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 112 PCKETATHTCEQASGFQMGVLYIAL-YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 170
P KE + Q G G++ AL YLIA G G ++ SGF ++ + E + ++
Sbjct: 80 PAKEVVGYVIAQVVG---GIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,251,503
Number of Sequences: 62578
Number of extensions: 523143
Number of successful extensions: 1184
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1175
Number of HSP's gapped (non-prelim): 9
length of query: 565
length of database: 14,973,337
effective HSP length: 104
effective length of query: 461
effective length of database: 8,465,225
effective search space: 3902468725
effective search space used: 3902468725
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)