Query 008450
Match_columns 565
No_of_seqs 137 out of 2056
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 03:50:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 4.3E-30 1.5E-34 277.4 30.2 433 23-544 21-478 (491)
2 2xut_A Proton/peptide symporte 100.0 5.4E-30 1.8E-34 279.1 24.9 473 21-545 18-510 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 1.5E-26 5.2E-31 245.9 24.4 379 36-540 48-436 (451)
4 4gc0_A D-xylose-proton symport 99.9 5.8E-27 2E-31 252.6 18.2 412 49-552 53-477 (491)
5 3o7q_A L-fucose-proton symport 99.9 2.6E-24 8.8E-29 228.0 30.3 338 33-497 43-407 (438)
6 2gfp_A EMRD, multidrug resista 99.9 4.5E-24 1.6E-28 221.9 18.8 341 24-495 9-350 (375)
7 2cfq_A Lactose permease; trans 99.9 2E-22 6.7E-27 213.7 13.7 386 26-545 18-407 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.3 1.3E-11 4.4E-16 130.4 12.2 171 23-221 260-433 (451)
9 3o7q_A L-fucose-proton symport 99.2 8.8E-11 3E-15 123.6 12.9 159 23-215 266-426 (438)
10 2cfq_A Lactose permease; trans 99.1 7.3E-11 2.5E-15 124.5 9.4 157 34-221 239-399 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.0 7.4E-10 2.5E-14 118.7 12.3 173 29-224 297-474 (491)
12 4gc0_A D-xylose-proton symport 98.9 3.6E-08 1.2E-12 105.4 16.9 171 29-225 290-466 (491)
13 2gfp_A EMRD, multidrug resista 98.6 5.6E-09 1.9E-13 107.7 1.0 156 24-209 208-364 (375)
14 2xut_A Proton/peptide symporte 98.5 1.9E-06 6.6E-11 92.8 15.9 141 355-539 56-200 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=4.3e-30 Score=277.35 Aligned_cols=433 Identities=20% Similarity=0.267 Sum_probs=290.1
Q ss_pred hHHHHHHHhHHHHHHHHHHhhhc-----CCCCchhhhhHHHHHHHHHHHHHhhhHHHhhc-cccchhHHHHHHHHHHHHH
Q 008450 23 IELCERLSTMGIAVNLVTYLVGT-----MHLPSATSANIVTDFMGTSFLLCLLGGFLADT-FLGRYKTIAIFAAVQTLGT 96 (565)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~yl~~~-----l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~~~~~~~~~~~~~ 96 (565)
..++++++++++...+++|+.+. +|.+..+.+++.+.+.++..++.+++|+++|| + |||+++.++.++..++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~~~~~~~~~~~ 99 (491)
T 4aps_A 21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAVFWGGVLIMLGH 99 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHH
Confidence 78889999999999999999988 99999999999999999999999999999999 8 99999999999999999
Q ss_pred HHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehh
Q 008450 97 GMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF 176 (565)
Q Consensus 97 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 176 (565)
++++++++ .+.++++|+++|+|.+...+...++++|++|+++.+ |+.+++++
T Consensus 100 ~~~~~~~~------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r~~~~~~~ 151 (491)
T 4aps_A 100 IVLALPFG------------------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIF 151 (491)
T ss_dssp HHHHSCCS------------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----HHHHHHHH
T ss_pred HHHHHhhh------------------------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----ceeeehHH
Confidence 99987733 667999999999999999999999999999987622 77788889
Q ss_pred hHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhcccccccc---CCCCC-chHHHHHHHHH--------
Q 008450 177 FFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYK---KSSGS-PIVHIFQVIVA-------- 244 (565)
Q Consensus 177 ~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~-------- 244 (565)
+...++|.++||.+++++.+..|||+.|++.++..++++++.+...++..++ +++.+ +.++..+....
T Consensus 152 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 231 (491)
T 4aps_A 152 VFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGF 231 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998877766666555443332211 11111 11111110000
Q ss_pred ------HHHhccccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHH
Q 008450 245 ------AIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLP 318 (565)
Q Consensus 245 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (565)
.....+. +..+................. ...|+. +.....++++......
T Consensus 232 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~ 287 (491)
T 4aps_A 232 IAIIVVMNLVGWN-------------------SLPAYINLLTIVAIAIPVFYF----AWMISS-VKVTSTEHLRVVSYIP 287 (491)
T ss_dssp HHHHHHHHHHSSC-------------------CTTHHHHHHHHHHHHHHHHHH----HHHC-------------CTTHHH
T ss_pred HHHHHHHHhccCc-------------------ccccchhhhhHHHHHHHHHHH----HHHhhc-ccccHHHHHHHHHHHH
Confidence 0000000 000000000000000000000 000000 0000122333333344
Q ss_pred HHHHHHHHHhhhcccchhhhhhh-hcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHH
Q 008450 319 IWATTIIFWTTYAQMITFSVEQA-TTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMA 397 (565)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~ 397 (565)
++.....++..+.+....+.... ...+.. ....+.......+..++..++.+++.|++.+| +......+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r-----~~~~~~~~~ 358 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN-----QPSSPTKFA 358 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC--------CHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhcc-----CCCchHHHH
Confidence 44445555555555444322211 111111 13456667777888888888899988877766 334556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHH
Q 008450 398 IGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFL 477 (565)
Q Consensus 398 ~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~ 477 (565)
.|.++..+++.++.+..... ..+...+.+++++.+++.+++.....+..++++.|.+|++.||+++|+.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 428 (491)
T 4aps_A 359 VGLMFAGLSFLLMAIPGALY----------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWF 428 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHC----------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc----------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88888888887776543210 00113467778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 008450 478 TTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPK 544 (565)
Q Consensus 478 ~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~ 544 (565)
+...+|..+++.+.+.+.+. ++...|++.++++++..++.+...++.+++
T Consensus 429 ~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 429 LSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876421 124567888888888887777776655443
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=5.4e-30 Score=279.06 Aligned_cols=473 Identities=22% Similarity=0.368 Sum_probs=285.9
Q ss_pred hhhHHHHHHHhHHHHHHHHHHhhhcCC------CCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHH
Q 008450 21 TGIELCERLSTMGIAVNLVTYLVGTMH------LPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL 94 (565)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~yl~~~l~------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 94 (565)
...+++.+++++++...++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.++.++..+
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~ 97 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 348899999999999999999999999 99999999999999999999999999999966999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcce--
Q 008450 95 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF-- 172 (565)
Q Consensus 95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~-- 172 (565)
+.++++++. .+.+.++++|++.|++.+...+...+++.|++|+++ |+++
T Consensus 98 ~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~ 148 (524)
T 2xut_A 98 GHAFLAIFE-----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQK 148 (524)
T ss_dssp HHHHHHHTS-----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TTHHHH
T ss_pred HHHHHHHhc-----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hHHHHH
Confidence 999988873 027789999999999999999999999999999988 7654
Q ss_pred -eehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccc
Q 008450 173 -FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKM 251 (565)
Q Consensus 173 -~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (565)
+++.+...++|.++||.+++++.+..||++.|++.+++.+++.++.+...++.++++|++++..+..+.+....++++.
T Consensus 149 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (524)
T 2xut_A 149 AFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVE 228 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhc
Confidence 4448888999999999999999988999999999888777666655554444333222222211111111111111100
Q ss_pred cCCCCcCccccCCcc---ccccCCCcchhHHhHHHHhhcCCCCCCCCCCCC-------ccccchhhHhHhHHHhHHHHHH
Q 008450 252 DLPCNVGMLYEDTPE---ASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPW-------KLCSVTSVEEVKMVARLLPIWA 321 (565)
Q Consensus 252 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 321 (565)
..+ ........... .....+......+........... +...+.+| ..++....+++++.......+.
T Consensus 229 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (524)
T 2xut_A 229 GKG-NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVM-GFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFA 306 (524)
T ss_dssp THH-HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHH-HHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHT
T ss_pred ccC-ccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhh-cccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHH
Confidence 000 00000000000 000000000000000000000000 00000001 0001111223344444444444
Q ss_pred HHHHHHhhhcccchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHH
Q 008450 322 TTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLV 401 (565)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~ 401 (565)
....++..+.+..+.+..+....+... + .+.+.+...+.+..++..++.+++..+..+|..+ +.+..+.+.+|.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 381 (524)
T 2xut_A 307 LVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV--KLTALRKMGAGIA 381 (524)
T ss_dssp TSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC--------------CCHHHHHTHHH
T ss_pred HHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC--CCChHHHHHHHHH
Confidence 445555555555554444433332221 1 2445566666677777778887775444444322 2445566778888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHH
Q 008450 402 LSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLS 481 (565)
Q Consensus 402 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ 481 (565)
+.+++++++.+..... +++...+.+++++.+++.+++++...+..++++.|.+|++.||+++|+.++...
T Consensus 382 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 451 (524)
T 2xut_A 382 ITGLSWIVVGTIQLMM----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVT 451 (524)
T ss_dssp HHHHHHHTTTTTTTTT----------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHH
T ss_pred HHHHHHHHHHHHHHHh----------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHH
Confidence 8888877665431100 001134667788899999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHhhhhhhcccCCCCCCcccc-ccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 008450 482 LGFFVSSFLVAVVKKVTGSKGGGGWLAD-NINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKK 545 (565)
Q Consensus 482 lg~~ig~~l~~~l~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~ 545 (565)
+|+.+++.+.+.+.+..+ .+|.++ +.+. ....|++.+++++++.+++++..+++++++
T Consensus 452 ~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 452 VGNLWVLLANVSVKSPTV----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp HHHHHHHHHHHHTTSCHH----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHhccccc----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 999999999998753211 123221 1111 122377888888888888777766655443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=1.5e-26 Score=245.91 Aligned_cols=379 Identities=7% Similarity=-0.044 Sum_probs=247.0
Q ss_pred HHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHH----HhhhcccCCC
Q 008450 36 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAM----VTKLRQLRPR 111 (565)
Q Consensus 36 ~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~ 111 (565)
....+++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.+++++ +.+
T Consensus 48 ~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~------- 118 (451)
T 1pw4_A 48 ALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATSS------- 118 (451)
T ss_dssp HHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHSS-------
T ss_pred HHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhcccc-------
Confidence 44455666788 9999999999999999999999999999999 9999999999999999999998 632
Q ss_pred CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450 112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL 191 (565)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~ 191 (565)
++.++++|+++|++.+...+...+++.|++|+++ |++++++.....++|.++||.++
T Consensus 119 -----------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 119 -----------------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp -----------------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999999999888 99999999999999999999999
Q ss_pred HHhccccc-chhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCcccccc
Q 008450 192 VYIQDEIS-RSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRI 270 (565)
Q Consensus 192 g~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (565)
+++.+..| ||+.|++.+++.++..++.++..++.+++....+..+ . ... .. ...
T Consensus 176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~~----~~-----~~~ 230 (451)
T 1pw4_A 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE--------------Y--KND----YP-----DDY 230 (451)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT--------------T--CCC--------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh--------------h--ccc----cc-----ccc
Confidence 99888888 9999999887766655544443332211110000000 0 000 00 000
Q ss_pred CCCcchhHHhHHHHhhcCCCCCCCCCCCCccc-cchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhccccccc
Q 008450 271 HHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLC-SVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIG 349 (565)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (565)
...+ +....++.. .....++++.....+..+......... ....+.+ .....+
T Consensus 231 ~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~g 284 (451)
T 1pw4_A 231 NEKA-------------------EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGI-LDWSPTY------LKEVKH 284 (451)
T ss_dssp ---------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHH------BTTBSC
T ss_pred hhhh-------------------hcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHH------HHHhcC
Confidence 0000 000000000 000011111111111111111111111 1111111 111111
Q ss_pred ccccCcchhhhhhhHHHHHHHHHhhhhhhhc--cccccCCCCCCchhHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhcCC
Q 008450 350 RFQIPAGSLTVFFVSAILITLAVYDRLIMPL--WKKWKGKPGFTNLQRMAIGLVLSI-VGMAAAALVERKRLSVARAVGL 426 (565)
Q Consensus 350 ~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l--~~r~~~~~~~~~~~~l~~G~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 426 (565)
......+.+.....+..++...+.+++.|++ .+| +.+.++.++.. ++++.+.+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~------------ 342 (451)
T 1pw4_A 285 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR----------GATGVFFMTLVTIATIVYWMNP------------ 342 (451)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH----------HHHHHHHHHHHHHHHHHTTSCC------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----------hhHHHHHHHHHHHHHHHHHHhc------------
Confidence 0111233455556666777777777776665 332 22444444444 4444433210
Q ss_pred CCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHH-HHHHhhHHhhhhhhcccCCCCCC
Q 008450 427 TTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSL-GFFVSSFLVAVVKKVTGSKGGGG 505 (565)
Q Consensus 427 ~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~l-g~~ig~~l~~~l~~~~~~~~~~~ 505 (565)
..+.+.+++..++.+++.....+..+.+..|.+|++.||+++|+.+....+ |..+++.+.+.+.+.. +
T Consensus 343 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g 411 (451)
T 1pw4_A 343 -----AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G 411 (451)
T ss_dssp -----TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C
T ss_pred -----ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C
Confidence 124555666777888888888888899999999999999999999999999 9999999999876421 1
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHhhhhhh
Q 008450 506 WLADNINRGRLDLFYGLLAILSIINLVIYLICAVW 540 (565)
Q Consensus 506 w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~ 540 (565)
+...|++.+++.+++.++.+...++
T Consensus 412 ----------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 412 ----------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp ----------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567888888888888777665443
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.94 E-value=5.8e-27 Score=252.59 Aligned_cols=412 Identities=12% Similarity=0.046 Sum_probs=234.4
Q ss_pred CchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchh
Q 008450 49 PSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQ 128 (565)
Q Consensus 49 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (565)
+..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.+++++++++...... .....+....-..+
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~------~~~~~~~~~~~a~~ 125 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTS------INPDNTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSC------SSSSSSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhh------hcchhHHHHHHhhh
Confidence 345678999999999999999999999999 99999999999999999999864210000 00000000001135
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhccc--------ccc
Q 008450 129 MGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE--------ISR 200 (565)
Q Consensus 129 ~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~--------~gw 200 (565)
.+.++++|+++|+|.|+..+..+.+++|..|+++ |++..++.+....+|.++++.++..+... .+|
T Consensus 126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 8889999999999999999999999999999999 99999999999999999998887766542 346
Q ss_pred hhhHHHHHHHHHHHHHHHHhcc--ccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCcchhH
Q 008450 201 SVGYGICSVAMFMAIIIFLAGT--KRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHF 278 (565)
Q Consensus 201 ~~~f~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (565)
|+.+.+..+..++.++..+..+ |++...+.+. ++..+.+.....+.... . ...+....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~---~~a~~~l~~~~~~~~~~---------------~--~~~~~~~~ 259 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLLYTVPESPRWLMSRGKQ---EQAEGILRKIMGNTLAT---------------Q--AVQEIKHS 259 (491)
T ss_dssp HHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCH---HHHHHHHHHHHHHHHHH---------------H--HHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCch---hHHHHhHHHhcCCchhH---------------H--HHHHHHHH
Confidence 7666665554444333322221 1111111111 11111111111000000 0 00000000
Q ss_pred HhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccc--hhhhhhhhcccccccccccCcc
Q 008450 279 LDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMI--TFSVEQATTMERSIGRFQIPAG 356 (565)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 356 (565)
.+.. .+.. .......+++....... .....+....... .....+. .... .....
T Consensus 260 ~~~~--~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~ 315 (491)
T 4gc0_A 260 LDHG--RKTG--------------GRLLMFGVGVIVIGVML--SIFQQFVGINVVLYYAPEVFKT--LGAS----TDIAL 315 (491)
T ss_dssp HHHH--HHHT--------------THHHHSCCTHHHHHHHH--HHHHHHTCHHHHHHHHHHHHHH--SSCC----HHHHH
T ss_pred HHhh--hhhh--------------hHHHHhcccHHHHHHHH--HHHHHHhhhhHHHhcchHHHHh--cCCC----ccchh
Confidence 0000 0000 00000011111111111 0000000000000 0011111 1000 11112
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeeh
Q 008450 357 SLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVF 436 (565)
Q Consensus 357 ~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 436 (565)
....+..+..++...+...+.|+++|| +.+..+...+.+++..++..... .....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~l~dr~Grr----------~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~ 370 (491)
T 4gc0_A 316 LQTIIVGVINLTFTVLAIMTVDKFGRK----------PLQIIGALGMAIGMFSLGTAFYT---------------QAPGI 370 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSH----------HHHHHHHHHHHHHHHHHHHHHHT---------------TCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCc----------chhccchHHHHHHHHHHHHHHhc---------------ccchH
Confidence 233344455555666666777776766 23566777777776665544321 11222
Q ss_pred hhHHHHHHHHHHHH-HhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccch
Q 008450 437 LLIPQFFLVGAGEA-FIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGR 515 (565)
Q Consensus 437 ~li~~~~l~g~g~~-~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~ 515 (565)
..++..++...+.. ...|..+.+..|.+|++.|++++|+.+.++++++++++.+.+.+.... |.... .+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~~~---~~ 440 (491)
T 4gc0_A 371 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLVAH---FH 440 (491)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHHHH---HT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhh---hh
Confidence 22233333333333 334777899999999999999999999999999999999888764211 10000 01
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccchhh
Q 008450 516 LDLFYGLLAILSIINLVIYLICAVWYKPKKPKAGIQM 552 (565)
Q Consensus 516 ~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~~~~~~~~ 552 (565)
....|++++++++++.++.+++.+|+|+++.||.++.
T Consensus 441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 441 NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 2346889999999999999999999999998775543
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=2.6e-24 Score=228.02 Aligned_cols=338 Identities=13% Similarity=0.115 Sum_probs=226.5
Q ss_pred HHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008450 33 GIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP 112 (565)
Q Consensus 33 ~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 112 (565)
+....+.+++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.+++......+
T Consensus 43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~------ 115 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEIM------ 115 (438)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhccccc------
Confidence 3455566678889999999999999999999999999999999999 999999999999999999983321112
Q ss_pred CCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH
Q 008450 113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV 192 (565)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g 192 (565)
+++.++++|++.|+|.|...+...+++.|++|+++ |++++++.+...++|.++||.+++
T Consensus 116 ---------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 116 ---------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38889999999999999999999999999999999 999999999999999999999999
Q ss_pred Hhc-cccc-------------------------chhhHHHHHHHHHHHHHHHHhcc-ccccccCCCCCchHHHHHHHHHH
Q 008450 193 YIQ-DEIS-------------------------RSVGYGICSVAMFMAIIIFLAGT-KRYRYKKSSGSPIVHIFQVIVAA 245 (565)
Q Consensus 193 ~l~-~~~g-------------------------w~~~f~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 245 (565)
++. +..+ ||+.|++.++..++..++.+... |+.+++++++++..
T Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--------- 245 (438)
T 3o7q_A 175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQG--------- 245 (438)
T ss_dssp HHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTT---------
T ss_pred HHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccc---------
Confidence 988 5554 99999877666555444433321 21111000000000
Q ss_pred HHhccccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHH
Q 008450 246 IKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTII 325 (565)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (565)
.....+ . +..++++........+.....
T Consensus 246 ---------------------------~~~~~~---~----------------------~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T 3o7q_A 246 ---------------------------SFSASL---S----------------------RLARIRHWRWAVLAQFCYVGA 273 (438)
T ss_dssp ---------------------------SHHHHH---H----------------------HHTTCSHHHHHHHHHHHHHHH
T ss_pred ---------------------------chhhhH---H----------------------HHHhChHHHHHHHHHHHHHHH
Confidence 000000 0 000111111111111122111
Q ss_pred HHhhhcccchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHH
Q 008450 326 FWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIV 405 (565)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~ 405 (565)
......+.+..+..+....+ ....+.+..+..+..++...+.+++.|++.+| +.+.++.++..+
T Consensus 274 ~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~----------~~~~~~~~~~~~ 337 (438)
T 3o7q_A 274 QTACWSYLIRYAVEEIPGMT------AGFAANYLTGTMVCFFIGRFTGTWLISRFAPH----------KVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHH
Confidence 11111112111022211111 11233445555666667777778887766554 335666666666
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHH
Q 008450 406 GMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFF 485 (565)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ 485 (565)
+++.+.+. +..+.+...++.+++....+|..+++..|..|++ +++++++.. ...+|..
T Consensus 338 ~~~~~~~~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~ 395 (438)
T 3o7q_A 338 LCLISAFA--------------------GGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGG 395 (438)
T ss_dssp HHHHHHHC--------------------CHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHH
T ss_pred HHHHHHHc--------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHH
Confidence 66555432 1123344557788888888999999999999987 999999887 6779999
Q ss_pred HhhHHhhhhhhc
Q 008450 486 VSSFLVAVVKKV 497 (565)
Q Consensus 486 ig~~l~~~l~~~ 497 (565)
+++.+.+.+.+.
T Consensus 396 ~~~~~~g~l~~~ 407 (438)
T 3o7q_A 396 IVTPVMGFVSDA 407 (438)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.91 E-value=4.5e-24 Score=221.93 Aligned_cols=341 Identities=12% Similarity=0.036 Sum_probs=224.3
Q ss_pred HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 008450 24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVT 103 (565)
Q Consensus 24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~ 103 (565)
.++..+......+.+ +.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++++++
T Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~ 86 (375)
T 2gfp_A 9 VAVGQMAQTIYIPAI-ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVTTS 86 (375)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHhc
Confidence 344444444344444 445778999999999999999999999999999999999 999999999999999999998884
Q ss_pred hhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHH
Q 008450 104 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLG 183 (565)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 183 (565)
+ .+.++++|++.|++.+...+...+++.|++|+++ |++++++.....++|
T Consensus 87 ~------------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g 136 (375)
T 2gfp_A 87 S------------------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVS 136 (375)
T ss_dssp H------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHH
T ss_pred c------------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHH
Confidence 3 7789999999999999999999999999999988 999999999999999
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccC
Q 008450 184 TLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYED 263 (565)
Q Consensus 184 ~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (565)
..++|.+++++.+..+||+.|++.++..++..+......|+ +++.+++. +
T Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------------~--------- 186 (375)
T 2gfp_A 137 PLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE---TRPVDAPR------------------T--------- 186 (375)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC---CSTTTCCC------------------C---------
T ss_pred HHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc---cCCCCccc------------------c---------
Confidence 99999999999998999999998777655544322222221 11110000 0
Q ss_pred CccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhc
Q 008450 264 TPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATT 343 (565)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (565)
+...++ .+..++++.....+..+.............+ .+..+..+
T Consensus 187 ------------------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g 231 (375)
T 2gfp_A 187 ------------------------------RLLTSY----KTLFGNSGFNCYLLMLIGGLAGIAAFEACSG-VLMGAVLG 231 (375)
T ss_dssp ------------------------------CTTTCS----THHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-CSSHHHHH
T ss_pred ------------------------------cHHHHH----HHHhcCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhC
Confidence 000000 0111222222211111121111111111111 22221111
Q ss_pred ccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHH-HHHHHHHHHHHHHHHhhhhh
Q 008450 344 MERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVL-SIVGMAAAALVERKRLSVAR 422 (565)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l-~~~~~~~~~~~~~~~~~~~~ 422 (565)
.+ ....+.+.....+..++...+.+++.+|..+ ++..+..+ ...+...+......
T Consensus 232 ~~------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~------------~~~~~~~~~~~~~~~~~~~~~~~------ 287 (375)
T 2gfp_A 232 LS------SMTVSILFILPIPAAFFGAWFAGRPNKRFST------------LMWQSVICCLLAGLLMWIPDWFG------ 287 (375)
T ss_dssp HH------HHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH------------HHHHHHHHHHHTSSSSSHHHHHH------
T ss_pred CC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhc------
Confidence 11 1112334444555555565655555333221 23344433 22332221111100
Q ss_pred hcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 008450 423 AVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVK 495 (565)
Q Consensus 423 ~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~ 495 (565)
..+.+..+...++.+++.+...+....+..|..| +.||++.|+.+....+|..+++.+.+.+.
T Consensus 288 ---------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 288 ---------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred ---------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1234455667788899999999999999999999 78999999999999999999999888764
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=2e-22 Score=213.66 Aligned_cols=386 Identities=11% Similarity=0.044 Sum_probs=220.1
Q ss_pred HHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHH---HHH
Q 008450 26 CERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGML---AMV 102 (565)
Q Consensus 26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~---a~~ 102 (565)
+...++....+.++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||+++++..+..++.... +++
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~~ 96 (417)
T 2cfq_A 18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFG 96 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444557899999999999999999999999999999999999999999 99999999888776543222 222
Q ss_pred hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450 103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL 182 (565)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 182 (565)
..+ ...+..++.+.+++.|...+...+...++.++.. ++++..++..+...++
T Consensus 97 ~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~ 149 (417)
T 2cfq_A 97 PLL-----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRARMFGCV 149 (417)
T ss_dssp HHH-----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCCHHHHSSSTTT
T ss_pred HHH-----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccchHHHHHHHHH
Confidence 110 0012344555555555544444455544443221 1267777777777899
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCcccc
Q 008450 183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYE 262 (565)
Q Consensus 183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (565)
|..++|.+++++.+ .+|++.|++.++..++..+..+...+ ++++..+. ++..+
T Consensus 150 g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~----~~~~~~~~------------------~~~~~---- 202 (417)
T 2cfq_A 150 GWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKT----DAPSSATV------------------ANAVG---- 202 (417)
T ss_dssp HHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCC----CCSCSSCS------------------SSSSS----
T ss_pred HHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCc----cccccccc------------------ccccc----
Confidence 99999999999876 68999998766553333222221111 11100000 00000
Q ss_pred CCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhh
Q 008450 263 DTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQAT 342 (565)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (565)
. ..++....+.. +..++++.. ............+..+.+....+..+
T Consensus 203 -----~---~~~~~~~~~~~----------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 249 (417)
T 2cfq_A 203 -----A---NHSAFSLKLAL----------------------ELFRQPKLW-FLSLYVIGVSCTYDVFDQQFANFFTS-- 249 (417)
T ss_dssp -----S---CCCCCCHHHHH----------------------HHTTCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred -----c---ccccccHHHHH----------------------HHhcCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 0 00000000000 001112211 11111111111111111111111111
Q ss_pred cccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008450 343 TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVAR 422 (565)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~ 422 (565)
..+.. +......+....++.+..++...+.+++.||+.+| +.+..+.++.++++..+.+
T Consensus 250 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~----------~~l~~~~~~~~~~~~~~~~---------- 308 (417)
T 2cfq_A 250 FFATG-EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK----------NALLLAGTIMSVRIIGSSF---------- 308 (417)
T ss_dssp TSSSH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH----------HHHHHHHHHHHHHHHHHTT----------
T ss_pred HHhcc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH----------HHHHHHHHHHHHHHHHHHH----------
Confidence 11100 00000112334444555556667777787776655 2355666666665544432
Q ss_pred hcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHH-HHHHHHHHHHHhhHHhhhhhhcccCC
Q 008450 423 AVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGL-FLTTLSLGFFVSSFLVAVVKKVTGSK 501 (565)
Q Consensus 423 ~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~lg~~ig~~l~~~l~~~~~~~ 501 (565)
..+.+.+++..++.+++.....+..+.++.|..|++.||++.++ ++..+++|+.++|.+.+.+.+.
T Consensus 309 ---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---- 375 (417)
T 2cfq_A 309 ---------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---- 375 (417)
T ss_dssp ---------CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH----
T ss_pred ---------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh----
Confidence 12334455555666777666667778999999999999999999 5888899999999999987531
Q ss_pred CCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 008450 502 GGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKK 545 (565)
Q Consensus 502 ~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~ 545 (565)
.++...|.+.+++++++.++.+...+++++.+
T Consensus 376 ------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 376 ------------IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp ------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred ------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 12456678888888888877766655544433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.28 E-value=1.3e-11 Score=130.44 Aligned_cols=171 Identities=18% Similarity=0.114 Sum_probs=142.4
Q ss_pred hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcc-ccchhHHHHHHHHHH-HHHHHHH
Q 008450 23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF-LGRYKTIAIFAAVQT-LGTGMLA 100 (565)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grr~~~~~~~~~~~-~~~~~~a 100 (565)
..++....++++..+++.|+++.+|++..+.+++.+.+.++..++.++.|+++||+ .|||+.+.++..+.. ++.++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (451)
T 1pw4_A 260 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 339 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 45566677788889999999988999999999999999999999999999999995 378888877766665 5554443
Q ss_pred HHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHH
Q 008450 101 MVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFI 180 (565)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 180 (565)
+. +. .+.+.+.+..++.|++.+...+....++.|.+|+++ |++++++.+...
T Consensus 340 ~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~ 391 (451)
T 1pw4_A 340 MN---PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFG 391 (451)
T ss_dssp SC---CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHH
T ss_pred Hh---cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHHHHHH
Confidence 33 10 136667788888999999998999999999999998 999999999999
Q ss_pred HH-HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhc
Q 008450 181 SL-GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAG 221 (565)
Q Consensus 181 ~l-g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~ 221 (565)
++ |..++|.+.|++.+..||+..|++.+++.+++.++.+..
T Consensus 392 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 392 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999999999998887777666555543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.19 E-value=8.8e-11 Score=123.64 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=128.1
Q ss_pred hHHHHHHHhHHHHHHHHHH-hhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHH
Q 008450 23 IELCERLSTMGIAVNLVTY-LVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAM 101 (565)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~y-l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~ 101 (565)
..++.....+++..+++.| +++.+|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~ 344 (438)
T 3o7q_A 266 AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAF 344 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH
Confidence 3455555667777889999 8888899999999999999999999999999999999 9999999999888888777766
Q ss_pred HhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHH
Q 008450 102 VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS 181 (565)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 181 (565)
.++ .. ..+..++.|++.+...|...++..|.+|++ ++.+.++.. ...
T Consensus 345 ~~~------------------------~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~ 391 (438)
T 3o7q_A 345 AGG------------------------HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTI 391 (438)
T ss_dssp CCH------------------------HH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTT
T ss_pred cCC------------------------cH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHH
Confidence 522 22 334457888999999999999999988854 444455544 456
Q ss_pred HHHHHHHHHHHHhccccc-chhhHHHHHHHHHHHH
Q 008450 182 LGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAI 215 (565)
Q Consensus 182 lg~~lg~~i~g~l~~~~g-w~~~f~i~~~~~~~~~ 215 (565)
+|..++|.+.|++.+..| ++..|++.+++.++.+
T Consensus 392 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 392 IGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999998765554443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.14 E-value=7.3e-11 Score=124.47 Aligned_cols=157 Identities=11% Similarity=0.076 Sum_probs=121.1
Q ss_pred HHHHHHHHhhhcCCC---CchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 008450 34 IAVNLVTYLVGTMHL---PSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 110 (565)
Q Consensus 34 ~~~~l~~yl~~~l~~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 110 (565)
....++.|+.+.++. +..+.+++.+...++..++.++.|+++||+ |||+++.++.++.+++.++.++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~------- 310 (417)
T 2cfq_A 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT------- 310 (417)
T ss_dssp HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 334567777765553 244557777777788888999999999999 999999988888777765554431
Q ss_pred CCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeeh-hhHHHHHHHHHHHH
Q 008450 111 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR-FFFFISLGTLMAVT 189 (565)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~lg~~ 189 (565)
+.+.+.+..++.+++.+...+....+..|.+|++. |+++.++ ++...++|.+++|.
T Consensus 311 -----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~~gp~ 367 (417)
T 2cfq_A 311 -----------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSV 367 (417)
T ss_dssp -----------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHHHHTH
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHHHhhh
Confidence 24556667777777777777777889999999988 9999888 47778899999999
Q ss_pred HHHHhcccccchhhHHHHHHHHHHHHHHHHhc
Q 008450 190 VLVYIQDEISRSVGYGICSVAMFMAIIIFLAG 221 (565)
Q Consensus 190 i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~ 221 (565)
++|++.+..||+..|.+.+++.+++.++.+..
T Consensus 368 l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 368 LAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 99999988899999988877766666554443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.04 E-value=7.4e-10 Score=118.66 Aligned_cols=173 Identities=12% Similarity=0.022 Sum_probs=131.4
Q ss_pred HHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHH-----HHHHHHHHHHHHHHHHh
Q 008450 29 LSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIA-----IFAAVQTLGTGMLAMVT 103 (565)
Q Consensus 29 ~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-----~~~~~~~~~~~~~a~~~ 103 (565)
..+......++.|..+.++.+..+.+++.+...++..++.++.|++.||+ |||+... ++..+.+++.++.++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
T 4aps_A 297 AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFAGLSFLLMAIPG 375 (491)
T ss_dssp HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566778888888888878889999999999999999999999999 9886655 66667777766666542
Q ss_pred hhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHH
Q 008450 104 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLG 183 (565)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 183 (565)
.... .....+.+.+.++.++.|++.+...+....++.|.+|++. |+++.++.+...++|
T Consensus 376 ~~~~---------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g 434 (491)
T 4aps_A 376 ALYG---------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSSSVG 434 (491)
T ss_dssp HHCC---------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHHHHH
T ss_pred HhcC---------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHH
Confidence 1100 0111235667788889999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhcccc
Q 008450 184 TLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKR 224 (565)
Q Consensus 184 ~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 224 (565)
..+++.+.+++.+ .++...|.+.+++.+++.++.+...++
T Consensus 435 ~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 435 SALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998876 567778887777766666665555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.86 E-value=3.6e-08 Score=105.37 Aligned_cols=171 Identities=11% Similarity=0.034 Sum_probs=121.2
Q ss_pred HHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008450 29 LSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQL 108 (565)
Q Consensus 29 ~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~ 108 (565)
+..+.......+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.+..+.......
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~~- 367 (491)
T 4gc0_A 290 FVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA- 367 (491)
T ss_dssp HTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhccc-
Confidence 33334444555666677888888877777888889999999999999999 9999999998888887777665422111
Q ss_pred CCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHH
Q 008450 109 RPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAV 188 (565)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~ 188 (565)
......+.+..+..+.+. +..|....+.+|.+|.+. |+++.++.....++|.++++
T Consensus 368 -----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~~ 423 (491)
T 4gc0_A 368 -----------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFVS 423 (491)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHH
Confidence 111222222222333333 334677789999999999 99999999999999999988
Q ss_pred HHHHHhcc------cccchhhHHHHHHHHHHHHHHHHhccccc
Q 008450 189 TVLVYIQD------EISRSVGYGICSVAMFMAIIIFLAGTKRY 225 (565)
Q Consensus 189 ~i~g~l~~------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 225 (565)
.+.+.+.+ ..++.+.|++.+++++++.+..++..|+.
T Consensus 424 ~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 424 WTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp THHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 87776543 34566788888877777776666655543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.62 E-value=5.6e-09 Score=107.68 Aligned_cols=156 Identities=11% Similarity=-0.012 Sum_probs=118.4
Q ss_pred HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHH-HHHHHHHHHHH
Q 008450 24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV-QTLGTGMLAMV 102 (565)
Q Consensus 24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~~~~~~~a~~ 102 (565)
.++......+...+++.|+++.+|.+..+.+++.+...++..++.++.|+++||+ ||+ +..+... ...+..+....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~~~~~~~~~~ 284 (375)
T 2gfp_A 208 LIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLLAGLLMWIPD 284 (375)
T ss_dssp HHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHHTSSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHh
Confidence 4444556666667777788877899999999999999999999999999999998 773 2333333 23332221211
Q ss_pred hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450 103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL 182 (565)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 182 (565)
.. + ..+.+.+.+..++.|++.+...+....+..|.+| ++ |+++.++.+...++
T Consensus 285 ~~-~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~~~~~~ 337 (375)
T 2gfp_A 285 WF-G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVGGLQNI 337 (375)
T ss_dssp HH-H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHHHHHHH
T ss_pred hh-c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHHHHHHH
Confidence 00 0 0135667788888999999999999999999987 55 99999999999999
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHH
Q 008450 183 GTLMAVTVLVYIQDEISRSVGYGICSV 209 (565)
Q Consensus 183 g~~lg~~i~g~l~~~~gw~~~f~i~~~ 209 (565)
|..++|.+.|.+.+..+|+..+.+.++
T Consensus 338 g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 338 GSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 999999999999887788877776443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.46 E-value=1.9e-06 Score=92.77 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=104.9
Q ss_pred cchhhhhhhHHHHHHHHHhhhhhhhc-cccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcce
Q 008450 355 AGSLTVFFVSAILITLAVYDRLIMPL-WKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPV 433 (565)
Q Consensus 355 ~~~~~~~~~~~~li~~~l~~~l~~~l-~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (565)
.+++.....+...+..++.+++.|++ .+| +.+.++.++..++.++..+. ..
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r----------~~~~~~~~~~~~~~~~~~~~------------------~~ 107 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKY----------NTILWLSLIYCVGHAFLAIF------------------EH 107 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSCSH----------HHHHHHHHHHHHHHHHHHHT------------------SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHHHHHHHHHh------------------cc
Confidence 34556666777777888888888877 554 34677777777777766542 11
Q ss_pred eehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHH---HHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccc
Q 008450 434 SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGL---FLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADN 510 (565)
Q Consensus 434 s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl---~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~ 510 (565)
+.+.+++..++.|++.+...+...+++.|.+|++.|++..+. .+....+|..+++.+.+.+... .+|
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~------~g~---- 177 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN------FGA---- 177 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT------SCH----
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ccH----
Confidence 566777888999999999999999999999999999877777 8888899999999988876531 123
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhhhhh
Q 008450 511 INRGRLDLFYGLLAILSIINLVIYLICAV 539 (565)
Q Consensus 511 ~~~~~~~~~f~~~a~l~lv~~~~~~~~~~ 539 (565)
...|++.+++.+++.++.+...+
T Consensus 178 ------~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 178 ------AVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHSSSS
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 56677777777776666554433
Done!