BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008451
         (565 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZZH|A Chain A, Structure Of The Fully Oxidized Di-Heme Cytochrome C
           Peroxidase From R. Capsulatus
 pdb|1ZZH|B Chain B, Structure Of The Fully Oxidized Di-Heme Cytochrome C
           Peroxidase From R. Capsulatus
 pdb|1ZZH|C Chain C, Structure Of The Fully Oxidized Di-Heme Cytochrome C
           Peroxidase From R. Capsulatus
 pdb|1ZZH|D Chain D, Structure Of The Fully Oxidized Di-Heme Cytochrome C
           Peroxidase From R. Capsulatus
          Length = 328

 Score = 33.5 bits (75), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 95  IRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIE 154
           +   +KAF      ++ +N  +      + L     I  NSK +Q L+G        +  
Sbjct: 136 VEAFAKAFPGQKDPISFDNFALAVEAFEATL-----ITPNSKFDQWLMGADGAMSADEKA 190

Query: 155 KLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQ--ALKIQEQENLLRA 212
            LK  ID   AAC +   +  +    +    + G ++LP  DKG+       + E + RA
Sbjct: 191 GLKLFIDTGCAACHNGINIGGNGYYPFGVVEKPGAEVLPAGDKGRFAVTATADDEYVFRA 250


>pdb|2YKK|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
           Glycoside Hydrolase Family 44
 pdb|3ZQ9|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
           Glycoside Hydrolase Family 44
          Length = 524

 Score = 29.3 bits (64), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 37  QQLNLEAVKTRAISLFKAISRI----------LEDFDAYARTNTTPKWQDILGQYSM 83
           +++  + +  R++SL KA+  I          L  F AY    T P W  + G YS 
Sbjct: 201 EKVGAKELVDRSVSLSKAVKAIDAGAEVFGPVLYGFGAYKDLQTAPDWDSVKGNYSW 257


>pdb|2YIH|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
           Gh Family 44 With Xyloglucan
 pdb|2YJQ|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
           Glycoside Hydrolase Family 44
 pdb|2YJQ|B Chain B, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
           Glycoside Hydrolase Family 44
          Length = 524

 Score = 29.3 bits (64), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 37  QQLNLEAVKTRAISLFKAISRI----------LEDFDAYARTNTTPKWQDILGQYSM 83
           +++  + +  R++SL KA+  I          L  F AY    T P W  + G YS 
Sbjct: 201 EKVGAKELVDRSVSLSKAVKAIDAGAEVFGPVLYGFGAYKDLQTAPDWDSVKGNYSW 257


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.128    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,637,492
Number of Sequences: 62578
Number of extensions: 397328
Number of successful extensions: 839
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 838
Number of HSP's gapped (non-prelim): 5
length of query: 565
length of database: 14,973,337
effective HSP length: 104
effective length of query: 461
effective length of database: 8,465,225
effective search space: 3902468725
effective search space used: 3902468725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)