BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008451
         (565 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4V3C1|MED8_ARATH Mediator of RNA polymerase II transcription subunit 8
           OS=Arabidopsis thaliana GN=MED8 PE=1 SV=1
          Length = 524

 Score =  568 bits (1465), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 340/534 (63%), Positives = 402/534 (75%), Gaps = 29/534 (5%)

Query: 27  AVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNL 86
             E+LN  + ++LNLE++KTRA+SL KAI+RILEDFDAY RTNTTPKWQDILGQYSMVNL
Sbjct: 13  VAEKLNPKLEKELNLESLKTRAVSLAKAIARILEDFDAYGRTNTTPKWQDILGQYSMVNL 72

Query: 87  ELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQN 146
           ELFNIV+E+++VS AFVV PKNVNA NA ILPVMLSSKLLPEME DDN+KREQLL G+Q+
Sbjct: 73  ELFNIVEEVKRVSNAFVVLPKNVNAMNAAILPVMLSSKLLPEMETDDNAKREQLLQGVQS 132

Query: 147 LPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQ 206
           LPIP QIE+LK+R+DMI AACE+AE+VLADTRKAY FGTRQGP +LPT+DKGQA KIQEQ
Sbjct: 133 LPIPMQIERLKARMDMIAAACENAERVLADTRKAYGFGTRQGPSMLPTMDKGQAAKIQEQ 192

Query: 207 ENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSS 266
           E +LR AVN G+G +LP DQRQ+T ALP HL D+L + D             K   P  S
Sbjct: 193 EKMLRDAVNDGKGTQLPPDQRQITTALPPHLADVLIINDAG-----------KIALPGQS 241

Query: 267 NSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSP 326
           N+I NQG ++Q SG Q +GRSAASPS      +FDNTT SP+PY+NSPR+ T M+N PSP
Sbjct: 242 NNINNQG-MMQVSGTQFVGRSAASPSGP----NFDNTT-SPLPYSNSPRA-TGMVNVPSP 294

Query: 327 QQQQQQQQQQQQQQQ-QQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQNQMSQLHDLQG-- 383
           Q Q QQQQ QQQQQ+ +  Q       Q     QQQ RQS MQGLGQ+Q+  LHD+ G  
Sbjct: 295 QHQIQQQQFQQQQQRSKLMQLPQHQQQQLLAQQQQQLRQSSMQGLGQSQIPALHDMHGQA 354

Query: 384 QQKFQQLHGQHQMQFSQPMG-HQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGA 442
           QQKFQ  HGQHQM +SQPMG HQQFQ RQL+ GH+QH + Q QL     +NRHL+QFSG 
Sbjct: 355 QQKFQTSHGQHQMPYSQPMGAHQQFQARQLSGGHIQHSMSQGQLNPA--MNRHLNQFSGG 412

Query: 443 ANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRM-QFGLAGNNPQRSHASQMLSDQMFNM 501
           ANSALF +AQG+ +SQMIPNMS ++ SQ+L+PRM QFG++G NPQRSH+SQML DQMFN 
Sbjct: 413 ANSALFTSAQGSPSSQMIPNMS-SMQSQTLVPRMQQFGVSGTNPQRSHSSQMLGDQMFN- 470

Query: 502 GASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPN 555
             S        Q QQ QQQQQ   QG +GNMQ N Q+LQ N + +QNAQQ H N
Sbjct: 471 -TSGMMQTQQTQIQQSQQQQQQQQQGGYGNMQTNQQSLQPNNM-MQNAQQRHQN 522


>sp|Q54B97|MED8_DICDI Putative mediator of RNA polymerase II transcription subunit 8
           OS=Dictyostelium discoideum GN=med8 PE=3 SV=1
          Length = 524

 Score = 48.5 bits (114), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 12/91 (13%)

Query: 40  NLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVS 99
           NL+++K +A           ED      T +T  W+DILG + +++ E  ++V E+  + 
Sbjct: 9   NLDSIKAKA-----------EDIRNLLLTTSTGNWEDILGHFVVLSGEYGSLVREVNNIY 57

Query: 100 KAFVVHPKNVNAENATILPVMLSSKLLPEME 130
            +  V P+ V  +   ++P +L +KL PE+E
Sbjct: 58  DSVAVFPEQVTGD-PNLIPNLLRTKLSPELE 87


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.125    0.344 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,600,518
Number of Sequences: 539616
Number of extensions: 7947246
Number of successful extensions: 200126
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 566
Number of HSP's that attempted gapping in prelim test: 48431
Number of HSP's gapped (non-prelim): 63631
length of query: 565
length of database: 191,569,459
effective HSP length: 123
effective length of query: 442
effective length of database: 125,196,691
effective search space: 55336937422
effective search space used: 55336937422
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)