Query 008451
Match_columns 565
No_of_seqs 44 out of 46
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 03:52:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h63_H Mediator of RNA polymer 99.9 6.5E-23 2.2E-27 193.1 9.9 165 40-208 12-181 (200)
2 4gwp_C Mediator of RNA polymer 99.6 2.6E-15 8.8E-20 153.4 8.9 141 39-188 31-177 (407)
3 4b8c_D Glucose-repressible alc 78.8 0.81 2.8E-05 48.6 2.3 16 317-332 38-53 (727)
4 3rrk_A V-type ATPase 116 kDa s 59.1 45 0.0015 32.2 9.5 127 41-182 108-257 (357)
5 4h63_V Mediator of RNA polymer 56.9 27 0.00093 31.5 7.0 63 157-221 56-120 (135)
6 2lkl_A Erythrocyte membrane pr 46.4 8.2 0.00028 32.6 1.7 38 146-183 40-80 (81)
7 2cly_B ATP synthase D chain, m 45.3 1.3E+02 0.0044 27.5 9.6 99 39-172 25-123 (160)
8 2b5u_A Colicin E3; high resolu 44.4 21 0.00073 38.7 4.9 31 96-131 265-296 (551)
9 2q12_A DIP13 alpha, DCC-intera 32.6 46 0.0016 31.0 4.7 44 38-83 27-70 (265)
10 3pik_A Cation efflux system pr 22.6 1.5E+02 0.0051 28.2 6.3 37 152-188 366-402 (446)
11 3gn4_A Myosin-VI; unconvention 22.4 81 0.0028 29.1 4.2 51 40-95 94-144 (148)
12 4fi5_A Nucleoprotein; structur 22.4 1.3E+02 0.0043 27.0 5.2 70 148-223 19-98 (113)
13 1nfn_A Apolipoprotein E3; lipi 21.9 2.1E+02 0.0071 26.4 6.9 50 38-102 23-74 (191)
14 4gwp_A Mediator of RNA polymer 21.4 1.2E+02 0.0043 27.1 5.1 96 40-169 12-111 (115)
15 1u6g_C TIP120 protein, CAND1; 21.0 48 0.0017 36.3 2.9 50 46-96 1167-1216(1230)
16 1ylm_A Hypothetical protein BS 20.9 3.3E+02 0.011 23.0 7.6 124 40-174 5-133 (144)
No 1
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=99.88 E-value=6.5e-23 Score=193.07 Aligned_cols=165 Identities=13% Similarity=0.187 Sum_probs=122.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhhhhhhhhcchhhhhhHHHH---hhhhcceEeeeccCCCC--CC
Q 008451 40 NLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEI---RKVSKAFVVHPKNVNAE--NA 114 (565)
Q Consensus 40 NLEAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~nLvEEI---kPvLr~FvVlPlnVnae--Na 114 (565)
.||+||.|+++|+++|.+|+.+|+..+ +.++|++||++|+||+++|.+|++.+ .++|+++||||+.+.|+ ..
T Consensus 12 ~LEs~R~Rl~qL~~Sl~~l~~~l~~~~---~lp~W~sll~q~~vl~~qL~sl~~~L~~~~~~l~~~~v~P~~~~P~~~~e 88 (200)
T 4h63_H 12 SLEAIRHRIAQIVQSLTHFLAILHQSE---SLSPWPTIHKNFNILLSQIHSLSNNLAAHSHTLQTTSIYPSLEFPVKEQE 88 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS---SCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTEEEEECTTSCTTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC---CCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcceeccCCCCCCcchh
Confidence 599999999999999999999999875 89999999999999999999999777 68999999999999877 45
Q ss_pred ccchhhhhcccCcchhhhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccCCCCCCCCc
Q 008451 115 TILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPT 194 (565)
Q Consensus 115 ~IVPdmLRTKLlPEmEtee~q~~~ql~~kA~nLP~~~qiEklqKQId~iNkacE~aekvIa~aRk~~e~gtRqGp~~~pT 194 (565)
.+|+.+||||++||||.-....++.......+.+.....+++.+..+....+|+.+.+ ..+.|+-|+++++..-...+.
T Consensus 89 ~~L~~LLR~K~~PeVe~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~w~g~~t~eE~~~g~~ 167 (200)
T 4h63_H 89 PLLTTLLRTKALPEVEEWEANTLQEYEASISSQPKKKEANDAYQKDQLWDQARIIFME-ERENYSWFDFVTRRQESEGEF 167 (200)
T ss_dssp HHHHHHTCCCCCHHHHHHHHHHHHHHHHHC--------CTTHHHHHHHHHHHHHHHHH-HGGGSCCC-------------
T ss_pred hHHHHHhcCCCCchHHHHHHHHHHhcccccccccchhhHHHHHhhHHHHHHHHHHHHH-HHHhhhhccchhHHHhhcCcc
Confidence 6799999999999999999998888888877777778888888888888888888876 555666666688888777777
Q ss_pred cChhHHHHHHHHHH
Q 008451 195 LDKGQALKIQEQEN 208 (565)
Q Consensus 195 ~dkadaaki~eqt~ 208 (565)
.++....+..+.+.
T Consensus 168 ~~~~~~~~~~~~e~ 181 (200)
T 4h63_H 168 VSQRQLEIDRATEE 181 (200)
T ss_dssp ---CCHHHHHHHHH
T ss_pred ccchhhhhhccccc
Confidence 77766666654443
No 2
>4gwp_C Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_C 3rj1_C 1edi_A 1edj_A 1edk_A 1edl_A
Probab=99.57 E-value=2.6e-15 Score=153.40 Aligned_cols=141 Identities=16% Similarity=0.232 Sum_probs=106.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhhhhhhhhcchhhhhhHHHH---hhhhcceEeeeccCCCC--C
Q 008451 39 LNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEI---RKVSKAFVVHPKNVNAE--N 113 (565)
Q Consensus 39 lNLEAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~nLvEEI---kPvLr~FvVlPlnVnae--N 113 (565)
-.||+||.|+..|.++|.+|+..|... +.+.|++|+++|.||+.+|.+|.+.+ .++|+++||||+...|. .
T Consensus 31 ~aLEslR~RL~QLt~SL~sL~~~L~~s----pLP~W~SLqsQfnILlsQL~SLs~~L~~n~~lL~~~vVyP~p~FP~rtq 106 (407)
T 4gwp_C 31 QALDAVRMRLAQLTHSLRRIRDEMSKA----ELPQWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSH 106 (407)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCT----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCCCCCCCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcHHHHHHHHHHHHHHHHHHHHHHhcchHhhhceeccCCCCCCcch
Confidence 369999999999999999999999653 69999999999999999999999888 88999999999988665 6
Q ss_pred CccchhhhhcccCcchhhhhhHHHHHHHhhcCCCCCc-hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccCCC
Q 008451 114 ATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIP-SQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQG 188 (565)
Q Consensus 114 a~IVPdmLRTKLlPEmEtee~q~~~ql~~kA~nLP~~-~qiEklqKQId~iNkacE~aekvIa~aRk~~e~gtRqG 188 (565)
..+|+.+||||++||||.-....| +. ..++.. ...+.+.+-++......+-|...+++.|+.|+++++-.
T Consensus 107 E~LLttLLRKKl~PEVEeWi~~gr---e~--~~~~~~~~~d~e~e~~lq~d~El~~WA~~~l~~E~eky~wk~~~t 177 (407)
T 4gwp_C 107 ESLVTTLLRKKNIPEVDEWMKYVR---ET--SGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEES 177 (407)
T ss_dssp TTTHHHHHTCCCCCTTHHHHHHHH---TT--SSCSSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----
T ss_pred hhHHHHHhccCCCchHHHHHHHHH---hc--CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccch
Confidence 679999999999999987766532 22 222211 12333333344444455555666777777777776654
No 3
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=78.84 E-value=0.81 Score=48.64 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=11.0
Q ss_pred CCCCCCCCChHHHhHH
Q 008451 317 GTNMMNTPSPQQQQQQ 332 (565)
Q Consensus 317 ~tnmmNtPSPQq~~~~ 332 (565)
-.-|+|.|+++++.+.
T Consensus 38 ~~~~~~~~~~~~~~~~ 53 (727)
T 4b8c_D 38 DPSLLNNPIWKLQLHL 53 (727)
T ss_dssp SCCCTTSHHHHHHHHH
T ss_pred CchhccCchHHHHHHH
Confidence 3557888888876643
No 4
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=59.12 E-value=45 Score=32.20 Aligned_cols=127 Identities=13% Similarity=0.074 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---hhhccccCCCCChh-h--hhhhhh----hc-chh-hhhhHHHHhhhhcceEeeecc
Q 008451 41 LEAVKTRAISLFKAISRILED---FDAYARTNTTPKWQ-D--ILGQYS----MV-NLE-LFNIVDEIRKVSKAFVVHPKN 108 (565)
Q Consensus 41 LEAVraRA~DLkkaIsriI~~---LE~e~~tN~t~kWp-D--VLdqFS----VI-S~Q-L~nLvEEIkPvLr~FvVlPln 108 (565)
++.+..|..+|+..|..+... ++... .|. + +-..|. +| +.+ +..+-+.+...++.+.|++..
T Consensus 108 ~~~l~~~~~~L~~~~~~l~~~~~~l~~L~------p~~~~ld~~~~~g~~~g~ip~~~~~~~~~~~l~~~~~~~~~~~~~ 181 (357)
T 3rrk_A 108 AEVLGKERAALEEEIQTIELFGKAAEKLA------ALAHGLDESPRLGVIPFLVAKPEELEAVRKALQEALADRFVLEAE 181 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHTTTTTTCTTEEEEEEEESCHHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHh------hhhccCCccceeeeeeEEecChhhHHHHHHHHHHhcCCeEEEEee
Confidence 556666666677666666666 44433 455 2 222344 44 332 344445555555665666654
Q ss_pred CCCCCCccchhhhhcccCcchhhhhhHHHHHHHhhc--CCCCCch---------hHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008451 109 VNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGM--QNLPIPS---------QIEKLKSRIDMIGAACESAEKVLADT 177 (565)
Q Consensus 109 VnaeNa~IVPdmLRTKLlPEmEtee~q~~~ql~~kA--~nLP~~~---------qiEklqKQId~iNkacE~aekvIa~a 177 (565)
...+..-+| +-+. .+.+. +.+.+...+ ..++++. .++.+.++|+.+.++++.+++-|.+.
T Consensus 182 ~~~~~~~~v---v~~~--~~~~~----~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~ 252 (357)
T 3rrk_A 182 PLENQLAAL---VVVK--RSELE----AARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARL 252 (357)
T ss_dssp ECSSSEEEE---EEEE--GGGHH----HHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEE---EEEE--HHHHH----HHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332221111 1121 12222 222233332 2344441 25678888888888888888888777
Q ss_pred HHhhh
Q 008451 178 RKAYC 182 (565)
Q Consensus 178 Rk~~e 182 (565)
.+.|.
T Consensus 253 ~~~~~ 257 (357)
T 3rrk_A 253 SRESG 257 (357)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 5
>4h63_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=56.87 E-value=27 Score=31.48 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhhhccCCCCCCCCccChh--HHHHHHHHHHHHHHHHhcCCCcc
Q 008451 157 KSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKG--QALKIQEQENLLRAAVNSGEGLR 221 (565)
Q Consensus 157 qKQId~iNkacE~aekvIa~aRk~~e~gtRqGp~~~pT~dka--daaki~eqt~lL~AAVn~GeGLr 221 (565)
.-+.+.+-.+||.+++++.+.|+.|-+|.-.. +..+.+.. +-.+.++-...+..++..|..++
T Consensus 56 ~~~~~~~vra~e~LL~L~r~lKe~wllg~l~~--~~e~~~~~e~~~e~~~~~~~~l~~~l~~~~l~e 120 (135)
T 4h63_V 56 ECHTVSMVRAVEQLLDVSRQIKSYWLTNSLST--SFPTVDYSEPDLEKVKRTLTKLQNHLLEVSLIE 120 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS--CCCCCCCSCCCHHHHHHHHHHHHTTTCCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44667788899999999999999999987766 44444332 22344555556666665555443
No 6
>2lkl_A Erythrocyte membrane protein 1 (pfemp1); helical protein, cell adhesion; NMR {Plasmodium falciparum}
Probab=46.36 E-value=8.2 Score=32.65 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=34.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHH---hHHHHHHHHHHhhhh
Q 008451 146 NLPIPSQIEKLKSRIDMIGAACE---SAEKVLADTRKAYCF 183 (565)
Q Consensus 146 nLP~~~qiEklqKQId~iNkacE---~aekvIa~aRk~~e~ 183 (565)
+=||.-+++-++|=+|.+..+|| +-++++.+..|+|+.
T Consensus 40 ~DPI~NQLnLfHkWLDRHRdMCEkw~nkee~L~KLkEeW~~ 80 (81)
T 2lkl_A 40 SDPIMNQLDLLHKWLDRHRDMCEKWKSKEDILHKLNEQWNK 80 (81)
T ss_dssp SCSSCTTHHHHHHHHHHTGGGGGGTCCSHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 45999999999999999999999 679999999999973
No 7
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=45.32 E-value=1.3e+02 Score=27.52 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=59.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhhhhhhhhcchhhhhhHHHHhhhhcceEeeeccCCCCCCccch
Q 008451 39 LNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILP 118 (565)
Q Consensus 39 lNLEAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~nLvEEIkPvLr~FvVlPlnVnaeNa~IVP 118 (565)
..|.++|.|-++++..+. .+.+.-+++.|.--=..-.+ ..||+++.+-+++|-| |.-
T Consensus 25 a~~~afK~~~d~~~~~v~-------~lpe~pp~IDwa~Yk~~l~~-----~~lVD~fek~y~s~kv-p~~---------- 81 (160)
T 2cly_B 25 AVANSLKSWNETLTSRLA-------TLPEKPPAIDWAYYKANVAK-----AGLVDDFEKKFNALKV-PIP---------- 81 (160)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HSCSSCCCCCHHHHHHTCSS-----TTHHHHHHHHHTTCCC-CCC----------
T ss_pred HHHHHHHHHHHHHHHHHH-------hcccCCCCCCHHHHHHhCCc-----hHHHHHHHHHHhccCC-CCC----------
Confidence 456677777777776654 34444588999765443333 5699999999999863 431
Q ss_pred hhhhcccCcchhhhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhHHH
Q 008451 119 VMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEK 172 (565)
Q Consensus 119 dmLRTKLlPEmEtee~q~~~ql~~kA~nLP~~~qiEklqKQId~iNkacE~aek 172 (565)
..|-++++|.++.+..... ....+...+||..|.+.+++.++
T Consensus 82 ---~d~~~~~i~a~e~~~~~~a---------~~~~~~s~~ri~~lekeL~~i~~ 123 (160)
T 2cly_B 82 ---EDKYTAQVDAEEKEDVKSC---------AEFLTQSKTRIQEYEKELEKMRN 123 (160)
T ss_dssp ---CCCCTTHHHHHHHHHHHTH---------HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---cchhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 1245667777766632221 12344456666666555554433
No 8
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=44.39 E-value=21 Score=38.66 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=18.6
Q ss_pred hhhhcceEeeeccCCCCCCccchhhhh-cccCcchhh
Q 008451 96 RKVSKAFVVHPKNVNAENATILPVMLS-SKLLPEMEI 131 (565)
Q Consensus 96 kPvLr~FvVlPlnVnaeNa~IVPdmLR-TKLlPEmEt 131 (565)
...-++|+++|. ...+=|+|++ |+.++--|.
T Consensus 265 ~nthDAII~FPe-----~Sg~ePlYISvs~ilt~~el 296 (551)
T 2b5u_A 265 GNTRDAVIRFPK-----DSGHNAVYVSVSDVLSPDQV 296 (551)
T ss_dssp TTEEEEEEECCG-----GGCCCCEEEEEEECCCHHHH
T ss_pred CCccceEEECCC-----CCCCCceEEEEeecCCHHHH
Confidence 345567777776 2345677777 666554444
No 9
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=32.63 E-value=46 Score=30.95 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=31.2
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhhhhhhhh
Q 008451 38 QLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSM 83 (565)
Q Consensus 38 QlNLEAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSV 83 (565)
+..++.++.|+..|.+....++.....+.. ...+|-+-|..|+.
T Consensus 27 E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~--a~~~f~~~L~~~~~ 70 (265)
T 2q12_A 27 EEDATAISNYMNQLYQAMHRIYDAQNELSA--ATHLTSKLLKEYEK 70 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 456788999999999999888888887662 33355555555543
No 10
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=22.60 E-value=1.5e+02 Score=28.18 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccCCC
Q 008451 152 QIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQG 188 (565)
Q Consensus 152 qiEklqKQId~iNkacE~aekvIa~aRk~~e~gtRqG 188 (565)
.++.+.++|+...+.++.+++.+..+++.|+.|.+.-
T Consensus 366 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~s~ 402 (446)
T 3pik_A 366 LRQSLNDQISAQQRYLASLQITLQRARALYQHGAVSY 402 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccH
Confidence 4567778888888889999999999999998876554
No 11
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=22.40 E-value=81 Score=29.06 Aligned_cols=51 Identities=10% Similarity=0.157 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhhhhhhhhcchhhhhhHHHH
Q 008451 40 NLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEI 95 (565)
Q Consensus 40 NLEAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~nLvEEI 95 (565)
+.+.+...+.+++.+|..++.++.. ++..|.+|-..|.-+-.....++.+|
T Consensus 94 ~k~k~~~~v~~~~~~i~~~i~kIK~-----~~i~~~~Id~~y~~lv~~~~~~l~~l 144 (148)
T 3gn4_A 94 GKQEMSKQVKDLEISIDALMAKIKS-----TMMTREQIQKEYDALVKSSAVLLSAL 144 (148)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTT-----SCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778999999999999999984 68999887666665555555544444
No 12
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=22.35 E-value=1.3e+02 Score=27.03 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=50.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh----------ccCCCCCCCCccChhHHHHHHHHHHHHHHHHhcC
Q 008451 148 PIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCF----------GTRQGPQILPTLDKGQALKIQEQENLLRAAVNSG 217 (565)
Q Consensus 148 P~~~qiEklqKQId~iNkacE~aekvIa~aRk~~e~----------gtRqGp~~~pT~dkadaaki~eqt~lL~AAVn~G 217 (565)
|-++.++.|++.|..+.+-...|-..+.++-++||- -.|.+ .++ +=-.||.|=...|..+|..|
T Consensus 19 ~~~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~-----~Vs-~lq~KiaeLKrqLAd~va~~ 92 (113)
T 4fi5_A 19 PGSMTMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREG-----VAV-SIQAKIDELKRQLADRIATG 92 (113)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHHC-
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHHhc
Confidence 445599999999999999999999999999999986 34444 122 22369999999999999999
Q ss_pred CCcccC
Q 008451 218 EGLRLP 223 (565)
Q Consensus 218 eGLr~p 223 (565)
+-..-|
T Consensus 93 k~~~k~ 98 (113)
T 4fi5_A 93 KNLGKE 98 (113)
T ss_dssp ------
T ss_pred ccccCC
Confidence 866654
No 13
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=21.88 E-value=2.1e+02 Score=26.39 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=28.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhhhhhh--hhcchhhhhhHHHHhhhhcce
Q 008451 38 QLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQY--SMVNLELFNIVDEIRKVSKAF 102 (565)
Q Consensus 38 QlNLEAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqF--SVIS~QL~nLvEEIkPvLr~F 102 (565)
+..||.|++++-|-...+. . .=.+++.++ +=++.+|..+..|....++.+
T Consensus 23 ~s~~e~v~~~~~~y~~~l~-------~--------~a~~~~eqL~~s~l~~el~~l~~e~~~~l~~~ 74 (191)
T 1nfn_A 23 GQRWELALGRFWDYLRWVQ-------T--------LSEQVQEELLSSQVTQELRALMDETMKELKAY 74 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHH-------H--------CCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHH-------H--------HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 3456667766665555442 1 123455555 556677777776665555543
No 14
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=21.39 E-value=1.2e+02 Score=27.07 Aligned_cols=96 Identities=19% Similarity=0.268 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhh----hhhhhhcchhhhhhHHHHhhhhcceEeeeccCCCCCCc
Q 008451 40 NLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDI----LGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENAT 115 (565)
Q Consensus 40 NLEAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDV----LdqFSVIS~QL~nLvEEIkPvLr~FvVlPlnVnaeNa~ 115 (565)
.|..|-.|+-.+-...+.++.-|-...+.|+..| +.| -+=|+.++.=-.+|..||+-+-.|.-|+
T Consensus 12 SL~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K-~qF~~~~~~fY~~Ls~~a~~LRkEIK~lDeNiG~~---------- 80 (115)
T 4gwp_A 12 SLNDIETQLCSMLQEASQVTFIFGELKRGNESVK-PQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTR---------- 80 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCce----------
Confidence 4667778888888888888887766655444432 222 2235555555566778888766655432
Q ss_pred cchhhhhcccCcchhhhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHh
Q 008451 116 ILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACES 169 (565)
Q Consensus 116 IVPdmLRTKLlPEmEtee~q~~~ql~~kA~nLP~~~qiEklqKQId~iNkacE~ 169 (565)
++|=- +..|+..+ .-|++..+|+.++++++.
T Consensus 81 ---------lLPIn----------VdkKa~~~----~~~Kl~eqi~~L~~ll~~ 111 (115)
T 4gwp_A 81 ---------LLPIN----------VNKKALGQ----DTEKMEEQLDLLSAILDP 111 (115)
T ss_dssp ---------SSCCS----------SCCCCCTH----HHHHHHHHHHHHHHHHHH
T ss_pred ---------Eeccc----------cccccccc----cHHHHHHHHHHHHHHhcc
Confidence 22221 23345555 888999999999888764
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=20.96 E-value=48 Score=36.32 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCCChhhhhhhhhhcchhhhhhHHHHh
Q 008451 46 TRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIR 96 (565)
Q Consensus 46 aRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~nLvEEIk 96 (565)
-|.+||++++-|++..|....+.+..++|.+++..-.- |.+|..+.++|+
T Consensus 1167 e~~~e~~r~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 1216 (1230)
T 1u6g_C 1167 EKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISS-NPELAAIFESIQ 1216 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCSSSSSCCCCCHHHHH-HHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccChHHHHHHHHHHh-CHHHHHHHHHHH
Confidence 58899999999999999987777779999999887554 444444444443
No 16
>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics, hypothetical cytosolic protein, PSI, protein structure initiative; 1.83A {Bacillus subtilis subsp}
Probab=20.94 E-value=3.3e+02 Score=22.99 Aligned_cols=124 Identities=10% Similarity=0.029 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhhhhhhhhcchhhhhhHHHHhhhhcceEeeeccCCCCCCccchh
Q 008451 40 NLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPV 119 (565)
Q Consensus 40 NLEAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~nLvEEIkPvLr~FvVlPlnVnaeNa~IVPd 119 (565)
+-+-|+.|++.+.+++..+-+ . .-|.|.+...+++- -|.-+.|-+..+.+.++-.=..-.|+++..+-+
T Consensus 5 d~~~i~~kl~~i~~~l~~l~~----~------~~~~d~~~~~av~~-~l~~~~Ea~~di~~~ii~~~~~~~p~sy~d~~~ 73 (144)
T 1ylm_A 5 DRSKIEKTLGFFEHQLALFDS----Q------TDWQSEIGELALQR-IGHLLIECILDTGNDMIDGFIMRDPGSYDDIMD 73 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS----C------CCSSSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTCCCCSSGGGHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHh----h------hhccCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 345677777777777764432 1 14455555555543 444455666666664433322234665555555
Q ss_pred hhh-cccCcchhh----hhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhHHHHH
Q 008451 120 MLS-SKLLPEMEI----DDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVL 174 (565)
Q Consensus 120 mLR-TKLlPEmEt----ee~q~~~ql~~kA~nLP~~~qiEklqKQId~iNkacE~aekvI 174 (565)
.|. .++.++-+. +....|+.+.+.=..+-...=++.+++.+..+.+.++.+.+.+
T Consensus 74 ~L~~~gvi~~~~~~~~~~m~g~RN~lvH~Y~~id~~~v~~~i~~~l~~l~~~~~~i~~~l 133 (144)
T 1ylm_A 74 ILVDEKVVTEKEGDELKKLIAYRKTLVQQYLLADSGELYRLIKAHQTALQDFPKRIRSYL 133 (144)
T ss_dssp HHHHTTSSCHHHHHHHHHHHTTHHHHHTCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcCHHHHHHHHHHHHHHhHHhcCccccCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 554 666665332 4556788888888888555566666666777766666666655
Done!