Query 008451
Match_columns 565
No_of_seqs 44 out of 46
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 03:52:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008451.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008451hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ek9a_ f.5.1.1 (A:) Integral 32.2 23 0.0016 30.9 4.7 37 151-187 332-368 (428)
2 d1yvia1 a.24.10.2 (A:2-143) Hi 23.7 45 0.0033 26.7 4.8 72 26-100 55-135 (142)
3 d1ykha1 a.252.1.2 (A:111-205) 21.8 1.8E+02 0.013 23.0 8.5 91 44-175 2-94 (95)
4 d1urua_ a.238.1.1 (A:) Amphiph 20.7 1.3E+02 0.0092 23.8 7.0 44 41-89 14-57 (217)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 20.7 72 0.0052 24.9 5.4 23 156-178 93-115 (133)
6 d1xzpa1 a.24.25.1 (A:118-211,A 20.6 92 0.0067 25.3 6.3 51 44-101 32-84 (173)
7 d1g7oa1 a.45.1.1 (A:76-215) Gl 20.3 60 0.0043 27.4 5.0 47 39-85 56-111 (140)
8 d3bi1a1 a.48.2.1 (A:594-750) G 18.4 26 0.0019 28.5 2.2 48 122-176 108-155 (157)
9 d1s4bp_ d.92.1.5 (P:) Neurolys 18.3 3.6E+02 0.026 26.4 11.3 43 42-86 8-50 (654)
10 d2a0ba_ a.24.10.1 (A:) Aerobic 17.9 94 0.0069 23.3 5.3 69 27-99 38-114 (118)
No 1
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=32.21 E-value=23 Score=30.87 Aligned_cols=37 Identities=30% Similarity=0.347 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccCC
Q 008451 151 SQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQ 187 (565)
Q Consensus 151 ~qiEklqKQId~iNkacE~aekvIa~aRk~~e~gtRq 187 (565)
..++.+.++|+...+.++.+++.+..+++.|+.|...
T Consensus 332 ~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~y~~G~~s 368 (428)
T d1ek9a_ 332 NNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRT 368 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 3667778889999999999999999999999987553
No 2
>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=23.69 E-value=45 Score=26.75 Aligned_cols=72 Identities=10% Similarity=0.219 Sum_probs=54.1
Q ss_pred chhhhhcHHHHhh-hcHHHHHHHHHHHHHH--------HHHHHHhhhhccccCCCCChhhhhhhhhhcchhhhhhHHHHh
Q 008451 26 VAVERLNQAVVQQ-LNLEAVKTRAISLFKA--------ISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIR 96 (565)
Q Consensus 26 ~~~e~ln~~V~~Q-lNLEAVraRA~DLkka--------IsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~nLvEEIk 96 (565)
.-++.|..++... .+++.|+.-+-.||.+ |..+...+|... ...+|+.+.+-|..|-.++..+..++.
T Consensus 55 ~~l~~l~~al~~~~~D~~~~~~~aH~LKGss~~lGa~~l~~~~~~lE~~~---~~~~~~~~~~~~~~L~~e~~~l~~~L~ 131 (142)
T d1yvia1 55 RIINEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFC---QDKSRDGCLMALAVVRNDFYDLRNKFQ 131 (142)
T ss_dssp HHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHhhccHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666776654 4788888888888865 566778888887 356899999999999999888887776
Q ss_pred hhhc
Q 008451 97 KVSK 100 (565)
Q Consensus 97 PvLr 100 (565)
..++
T Consensus 132 ~~l~ 135 (142)
T d1yvia1 132 TMLQ 135 (142)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 3
>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex protein MED7 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.81 E-value=1.8e+02 Score=22.99 Aligned_cols=91 Identities=15% Similarity=0.278 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc--cCCCCChhhhhhhhhhcchhhhhhHHHHhhhhcceEeeeccCCCCCCccchhhh
Q 008451 44 VKTRAISLFKAISRILEDFDAYAR--TNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVML 121 (565)
Q Consensus 44 VraRA~DLkkaIsriI~~LE~e~~--tN~t~kWpDVLdqFSVIS~QL~nLvEEIkPvLr~FvVlPlnVnaeNa~IVPdmL 121 (565)
+..|..+||+....++..|--.-+ +..-..|++=++..+++-..+..|..|.+|.
T Consensus 2 ~~~k~~ELkkln~sll~nfleLl~~l~~~P~~~~~kvedl~~LfiN~HhllNeyRPh----------------------- 58 (95)
T d1ykha1 2 YQYKIQELRKLLKSLLLNYLELIGVLSINPDMYERKVENIRTILVNIHHLLNEYRPH----------------------- 58 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCCGGGHHHHHHHHHHHHHHHHHHHHHTHHH-----------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCccchHhhHHHHHHHHHHHHHHHHccCcH-----------------------
Confidence 346788888888777665433221 1122345555555555544444454554441
Q ss_pred hcccCcchhhhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhHHHHHH
Q 008451 122 SSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLA 175 (565)
Q Consensus 122 RTKLlPEmEtee~q~~~ql~~kA~nLP~~~qiEklqKQId~iNkacE~aekvIa 175 (565)
+.|+-+..-| ..++|.-+..|+.+.++|+.+.++|+
T Consensus 59 -------------QAResLi~lm-----e~Ql~~kr~~~~~i~~~~~~~~~~L~ 94 (95)
T d1ykha1 59 -------------QSRESLIMLL-----EEQLEYKRGEIREIEQVCKQVHDKLT 94 (95)
T ss_dssp -------------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -------------hHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222222221 12566667778888888888888774
No 4
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=20.72 E-value=1.3e+02 Score=23.84 Aligned_cols=44 Identities=7% Similarity=0.043 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhhhhhhhhcchhhh
Q 008451 41 LEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELF 89 (565)
Q Consensus 41 LEAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~ 89 (565)
.+.+..+.+++...|.+++..++.+. -.|.+++.....++..+.
T Consensus 14 fe~~~~~~~~~e~~l~~l~k~~~~~~-----~~~~~~~~~~~~~~~~l~ 57 (217)
T d1urua_ 14 FDDHLNNFNRQQASANRLQKEFNNYI-----RCVRAAQAASKTLMDSVC 57 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 45677777788888888888777765 256666555555544433
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.71 E-value=72 Score=24.90 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 008451 156 LKSRIDMIGAACESAEKVLADTR 178 (565)
Q Consensus 156 lqKQId~iNkacE~aekvIa~aR 178 (565)
+.+||+.+++..+...+-+++.+
T Consensus 93 l~~ri~~l~~~~~~l~~~~~~~~ 115 (133)
T d1fxkc_ 93 IKSQKNELESTLQKMGENLRAIT 115 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 6
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.62 E-value=92 Score=25.29 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccc--CCCCChhhhhhhhhhcchhhhhhHHHHhhhhcc
Q 008451 44 VKTRAISLFKAISRILEDFDAYART--NTTPKWQDILGQYSMVNLELFNIVDEIRKVSKA 101 (565)
Q Consensus 44 VraRA~DLkkaIsriI~~LE~e~~t--N~t~kWpDVLdqFSVIS~QL~nLvEEIkPvLr~ 101 (565)
+..+++.|++.|-.++-.+|.+-+. +....+.++... |..+.++++++++.
T Consensus 32 ls~~i~~ir~~L~~l~a~iEa~iDf~ee~~~~~~~~~~~-------l~~i~~~l~~li~~ 84 (173)
T d1xzpa1 32 LRDFVDSLRRELIEVLAEIRVELDYPDEIETNTGEVVTR-------LERIKEKLTEELKK 84 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTCCCCHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3444555555554444444443321 123445554444 44555555554443
No 7
>d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}
Probab=20.32 E-value=60 Score=27.35 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=32.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhhhhccc----cCCCCChhhh-----hhhhhhcc
Q 008451 39 LNLEAVKTRAISLFKAISRILEDFDAYAR----TNTTPKWQDI-----LGQYSMVN 85 (565)
Q Consensus 39 lNLEAVraRA~DLkkaIsriI~~LE~e~~----tN~t~kWpDV-----LdqFSVIS 85 (565)
.|+|..+++...|.+.|...|..|+..-. .|+.+.|+|| |.+|+||-
T Consensus 56 g~f~~~l~~t~~li~~l~~~L~~L~~ll~~~~~~~~~ls~DDi~lFp~LR~ltivk 111 (140)
T d1g7oa1 56 GNFADLLAHSDGLIKNISDDLRALDKLIVKPNAVNGELSEDDIQLFPLLRNLTLVA 111 (140)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCTTSSCCHHHHHHHHHHHHHHTST
T ss_pred CCHHHHHHcCHHHHHHHHHHHHHHHHHHhCccccCCCccHHHHHHHHHHhhhHhhc
Confidence 47888999998888888888888874321 3455677776 45555443
No 8
>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.40 E-value=26 Score=28.54 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=33.7
Q ss_pred hcccCcchhhhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHH
Q 008451 122 SSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLAD 176 (565)
Q Consensus 122 RTKLlPEmEtee~q~~~ql~~kA~nLP~~~qiEklqKQId~iNkacE~aekvIa~ 176 (565)
.++..|.+ +|.++.+-....-...++.++++|..+..++++|-++|++
T Consensus 108 ~~~~FPgi-------~dAi~~~~~~~~~~~~w~~~~~qi~~~~~~i~~Aa~~L~~ 155 (157)
T d3bi1a1 108 AGESFPGI-------YDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAAETLSE 155 (157)
T ss_dssp EEEESHHH-------HHHHTTGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ccccchhH-------HHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35677776 4445544333333457899999999999999998887743
No 9
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.30 E-value=3.6e+02 Score=26.45 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCCChhhhhhhhhhcch
Q 008451 42 EAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNL 86 (565)
Q Consensus 42 EAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~ 86 (565)
|.|...++++.+.....|..+.... .+..+|.+++.-+.-++-
T Consensus 8 e~i~~~~~~~i~~~~~~id~I~~~~--~~~~tfen~i~~ld~~~~ 50 (654)
T d1s4bp_ 8 QQIEERTRELIEQTKRVYDQVGTQE--FEDVSYESTLKALADVEV 50 (654)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC--GGGCCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHHHHHH
Confidence 4455555555444444444443321 245789998887766553
No 10
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=17.89 E-value=94 Score=23.31 Aligned_cols=69 Identities=7% Similarity=0.010 Sum_probs=50.2
Q ss_pred hhhhhcHHHHhhhcHHHHHHHHHHHHHH--------HHHHHHhhhhccccCCCCChhhhhhhhhhcchhhhhhHHHHhhh
Q 008451 27 AVERLNQAVVQQLNLEAVKTRAISLFKA--------ISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKV 98 (565)
Q Consensus 27 ~~e~ln~~V~~QlNLEAVraRA~DLkka--------IsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~nLvEEIkPv 98 (565)
-++.|-.++. +-|.+.++.-+-.||.+ |..+...+|... ...+|+++..-+.-|-.++...+++++..
T Consensus 38 ~l~~l~~a~~-~~d~~~~~~~aH~LKgsa~~~G~~~l~~~~~~lE~~~---~~~~~~~~~~~l~~l~~~~~~~~~~L~~~ 113 (118)
T d2a0ba_ 38 YVSVLESNLT-AQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQSPD---LPAWEDNVGEWIEEMKEEWRHDVEVLKAW 113 (118)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTCTT---STTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554 45888888888888865 556777788766 35579999888888888888888877764
Q ss_pred h
Q 008451 99 S 99 (565)
Q Consensus 99 L 99 (565)
|
T Consensus 114 l 114 (118)
T d2a0ba_ 114 V 114 (118)
T ss_dssp H
T ss_pred H
Confidence 4
Done!