BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008452
         (565 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus: Internal Aldimine Form
 pdb|3B1C|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus: Internal Aldimine Form
 pdb|3B1C|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus: Internal Aldimine Form
 pdb|3B1C|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus: Internal Aldimine Form
 pdb|3B1D|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: External Aldimine
           Form
 pdb|3B1D|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: External Aldimine
           Form
 pdb|3B1D|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: External Aldimine
           Form
 pdb|3B1D|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: External Aldimine
           Form
 pdb|3B1E|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
           Form
 pdb|3B1E|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
           Form
 pdb|3B1E|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
           Form
 pdb|3B1E|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
           Form
          Length = 392

 Score = 30.0 bits (66), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 9/47 (19%)

Query: 141 PPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLT 187
           P LL  WIA        ++DF+++P++K  +H Y   Q V+   + +
Sbjct: 31  PQLLPAWIA--------DMDFEVMPEVKQAIHDYA-EQLVYGYTYAS 68


>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
           Synthase From Vitis Vinifera Involved In Auxin
           Homeostasis
 pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
           Synthase From Vitis Vinifera Involved In Auxin
           Homeostasis
          Length = 609

 Score = 28.9 bits (63), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 413 SKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPS 461
           S   EEL    +S  +  N YK  RC N  PI +E L  R+V +  SP+
Sbjct: 541 SGTFEELMDYAISRGASINQYKVPRCVNFTPI-MELLDSRVVSSHFSPA 588


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,925,937
Number of Sequences: 62578
Number of extensions: 695103
Number of successful extensions: 1758
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1754
Number of HSP's gapped (non-prelim): 18
length of query: 565
length of database: 14,973,337
effective HSP length: 104
effective length of query: 461
effective length of database: 8,465,225
effective search space: 3902468725
effective search space used: 3902468725
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)