Query 008452
Match_columns 565
No_of_seqs 374 out of 2252
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 12:20:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.7 6E-19 1.3E-23 167.0 4.2 268 33-368 98-390 (419)
2 KOG4341 F-box protein containi 99.6 3.7E-17 8E-22 161.7 1.3 41 35-75 74-120 (483)
3 PLN00113 leucine-rich repeat r 99.4 4.8E-13 1E-17 156.9 13.3 258 153-425 92-367 (968)
4 PLN00113 leucine-rich repeat r 99.4 1E-12 2.2E-17 154.1 11.0 304 153-483 235-580 (968)
5 PLN03210 Resistant to P. syrin 99.3 5.5E-12 1.2E-16 149.1 13.4 121 154-285 589-714 (1153)
6 PLN03210 Resistant to P. syrin 99.2 6.4E-11 1.4E-15 140.1 14.3 252 154-425 611-880 (1153)
7 KOG4194 Membrane glycoprotein 99.0 5.4E-10 1.2E-14 115.4 4.8 141 187-332 81-230 (873)
8 KOG4341 F-box protein containi 98.9 1.8E-10 3.9E-15 114.8 0.9 172 185-356 139-332 (483)
9 KOG0444 Cytoskeletal regulator 98.9 1.2E-10 2.6E-15 120.8 -1.6 159 172-333 91-255 (1255)
10 KOG4194 Membrane glycoprotein 98.9 6.8E-10 1.5E-14 114.7 3.3 126 154-287 102-233 (873)
11 KOG2120 SCF ubiquitin ligase, 98.6 5.6E-09 1.2E-13 99.9 0.5 181 150-357 155-351 (419)
12 PF12937 F-box-like: F-box-lik 98.6 3E-08 6.6E-13 70.1 3.6 35 33-67 1-35 (47)
13 KOG0444 Cytoskeletal regulator 98.6 4.5E-09 9.7E-14 109.4 -1.1 155 174-333 139-301 (1255)
14 PRK15370 E3 ubiquitin-protein 98.6 1.6E-07 3.6E-12 105.0 10.4 244 152-425 176-426 (754)
15 cd00116 LRR_RI Leucine-rich re 98.6 9.5E-08 2.1E-12 97.3 7.1 159 125-287 25-205 (319)
16 cd00116 LRR_RI Leucine-rich re 98.6 5.9E-08 1.3E-12 98.8 5.3 131 154-287 23-177 (319)
17 PRK15387 E3 ubiquitin-protein 98.5 6.4E-07 1.4E-11 99.9 11.2 114 154-287 201-314 (788)
18 KOG3207 Beta-tubulin folding c 98.5 6.2E-08 1.3E-12 97.5 2.3 151 182-333 119-281 (505)
19 KOG0618 Serine/threonine phosp 98.4 6.9E-08 1.5E-12 105.2 1.2 294 154-482 68-438 (1081)
20 KOG0617 Ras suppressor protein 98.4 1.6E-08 3.4E-13 89.5 -4.4 150 179-332 28-182 (264)
21 PRK15387 E3 ubiquitin-protein 98.3 1.8E-06 3.8E-11 96.4 8.7 113 154-287 222-334 (788)
22 PF14580 LRR_9: Leucine-rich r 98.2 1.3E-06 2.8E-11 80.1 5.3 82 182-264 40-124 (175)
23 KOG0618 Serine/threonine phosp 98.2 2.1E-07 4.5E-12 101.6 -0.7 67 143-218 255-322 (1081)
24 KOG1909 Ran GTPase-activating 98.2 6.2E-07 1.3E-11 88.1 2.1 212 121-355 28-281 (382)
25 KOG1947 Leucine rich repeat pr 98.2 1.2E-06 2.6E-11 94.4 4.0 166 154-334 188-373 (482)
26 PF00646 F-box: F-box domain; 98.2 7.6E-07 1.6E-11 63.2 1.4 37 33-69 3-39 (48)
27 PRK15370 E3 ubiquitin-protein 98.1 6.4E-06 1.4E-10 92.3 8.6 177 154-355 199-378 (754)
28 KOG1909 Ran GTPase-activating 98.1 1.2E-06 2.6E-11 86.1 2.1 192 182-376 28-281 (382)
29 PF14580 LRR_9: Leucine-rich r 98.1 3E-06 6.5E-11 77.7 4.3 103 182-287 17-125 (175)
30 smart00256 FBOX A Receptor for 98.0 4.4E-06 9.6E-11 56.9 3.2 34 36-69 1-34 (41)
31 KOG3207 Beta-tubulin folding c 98.0 4.4E-06 9.6E-11 84.4 3.1 151 182-332 170-335 (505)
32 KOG0617 Ras suppressor protein 97.8 4.5E-07 9.8E-12 80.4 -6.0 142 154-308 33-181 (264)
33 KOG0472 Leucine-rich repeat pr 97.8 5.7E-08 1.2E-12 96.7 -13.2 158 171-332 78-261 (565)
34 KOG1947 Leucine rich repeat pr 97.8 5.1E-06 1.1E-10 89.5 -0.1 39 31-69 43-81 (482)
35 KOG3665 ZYG-1-like serine/thre 97.7 1.8E-05 4E-10 87.9 3.1 150 184-333 122-285 (699)
36 KOG0472 Leucine-rich repeat pr 97.5 2.3E-06 5.1E-11 85.4 -7.6 157 172-333 148-307 (565)
37 KOG2982 Uncharacterized conser 97.3 0.00053 1.1E-08 66.5 6.5 200 154-360 71-284 (418)
38 KOG1259 Nischarin, modulator o 97.3 5.8E-05 1.3E-09 72.9 -0.3 69 171-241 169-247 (490)
39 KOG4237 Extracellular matrix p 97.2 0.0001 2.2E-09 73.9 0.7 121 185-307 68-195 (498)
40 PF13855 LRR_8: Leucine rich r 97.1 0.0002 4.2E-09 53.6 1.1 58 184-242 1-60 (61)
41 KOG3665 ZYG-1-like serine/thre 97.0 0.00062 1.3E-08 75.9 4.4 35 299-333 147-183 (699)
42 KOG4658 Apoptotic ATPase [Sign 97.0 0.00021 4.5E-09 81.8 0.6 102 182-286 543-653 (889)
43 KOG1259 Nischarin, modulator o 97.0 0.00038 8.3E-09 67.4 2.2 79 206-286 284-363 (490)
44 KOG1859 Leucine-rich repeat pr 96.9 0.0003 6.5E-09 75.7 0.6 200 120-332 52-288 (1096)
45 COG4886 Leucine-rich repeat (L 96.8 0.00096 2.1E-08 70.2 4.1 148 180-333 112-265 (394)
46 PF13855 LRR_8: Leucine rich r 96.8 0.0013 2.8E-08 49.1 3.1 58 154-218 1-61 (61)
47 KOG2982 Uncharacterized conser 96.6 0.0017 3.7E-08 63.0 3.6 154 177-333 38-209 (418)
48 COG4886 Leucine-rich repeat (L 96.6 0.0016 3.4E-08 68.6 3.5 166 154-333 116-287 (394)
49 KOG2739 Leucine-rich acidic nu 96.4 0.001 2.3E-08 63.5 0.8 61 227-287 39-103 (260)
50 PRK15386 type III secretion pr 96.4 0.0048 1E-07 63.9 5.6 12 232-243 95-106 (426)
51 COG5238 RNA1 Ran GTPase-activa 96.4 0.0025 5.4E-08 61.2 2.9 149 183-333 29-224 (388)
52 KOG2123 Uncharacterized conser 96.3 0.00051 1.1E-08 66.0 -1.9 112 205-319 18-136 (388)
53 KOG4237 Extracellular matrix p 96.3 0.0035 7.7E-08 63.2 3.8 58 154-218 67-128 (498)
54 KOG4658 Apoptotic ATPase [Sign 96.2 0.0015 3.2E-08 74.9 0.9 190 182-376 569-781 (889)
55 PF12799 LRR_4: Leucine Rich r 96.2 0.0052 1.1E-07 42.5 3.0 34 185-218 2-36 (44)
56 KOG2739 Leucine-rich acidic nu 96.2 0.0013 2.9E-08 62.8 0.1 104 182-285 41-153 (260)
57 PF07723 LRR_2: Leucine Rich R 96.0 0.0062 1.3E-07 36.7 2.5 25 207-231 1-26 (26)
58 PLN03150 hypothetical protein; 96.0 0.0092 2E-07 66.5 5.9 78 186-264 420-501 (623)
59 KOG3864 Uncharacterized conser 95.7 0.0031 6.6E-08 58.1 0.1 92 173-264 90-187 (221)
60 KOG1644 U2-associated snRNP A' 95.6 0.02 4.4E-07 52.8 5.1 59 183-242 63-124 (233)
61 PLN03150 hypothetical protein; 95.5 0.015 3.3E-07 64.9 4.7 71 174-245 432-504 (623)
62 PRK15386 type III secretion pr 95.4 0.042 9E-07 57.1 7.2 35 324-358 73-108 (426)
63 KOG1644 U2-associated snRNP A' 95.3 0.018 3.9E-07 53.2 3.9 100 184-286 42-151 (233)
64 PF12799 LRR_4: Leucine Rich r 94.3 0.029 6.3E-07 38.7 2.0 36 206-243 1-36 (44)
65 KOG1859 Leucine-rich repeat pr 94.1 0.0027 5.8E-08 68.6 -5.3 80 202-287 183-266 (1096)
66 KOG0281 Beta-TrCP (transducin 94.0 0.024 5.3E-07 55.8 1.5 38 29-66 71-112 (499)
67 KOG0532 Leucine-rich repeat (L 93.9 0.005 1.1E-07 64.9 -3.7 157 185-349 76-236 (722)
68 COG5238 RNA1 Ran GTPase-activa 93.7 0.072 1.6E-06 51.5 3.9 91 123-218 30-132 (388)
69 KOG0531 Protein phosphatase 1, 93.4 0.013 2.8E-07 62.1 -1.8 102 182-287 93-198 (414)
70 PF13306 LRR_5: Leucine rich r 92.7 0.071 1.5E-06 46.0 2.2 13 202-214 8-20 (129)
71 KOG2123 Uncharacterized conser 91.9 0.025 5.5E-07 54.7 -1.8 77 252-333 18-98 (388)
72 KOG0531 Protein phosphatase 1, 91.5 0.071 1.5E-06 56.5 0.9 80 180-263 114-196 (414)
73 KOG2997 F-box protein FBX9 [Ge 91.5 0.12 2.7E-06 50.7 2.3 36 30-65 104-144 (366)
74 PF13306 LRR_5: Leucine rich r 91.2 0.29 6.3E-06 42.1 4.3 99 182-284 10-112 (129)
75 PLN03215 ascorbic acid mannose 91.1 0.17 3.6E-06 52.0 3.0 38 32-69 3-41 (373)
76 KOG0532 Leucine-rich repeat (L 88.8 0.019 4.2E-07 60.7 -5.9 127 175-308 112-242 (722)
77 PF08387 FBD: FBD; InterPro: 87.1 0.2 4.3E-06 35.8 0.1 39 510-551 8-46 (51)
78 KOG3864 Uncharacterized conser 86.0 0.14 3E-06 47.4 -1.4 46 310-355 138-187 (221)
79 PF13516 LRR_6: Leucine Rich r 84.1 1.1 2.4E-05 26.1 2.4 22 205-226 1-22 (24)
80 smart00367 LRR_CC Leucine-rich 83.6 0.5 1.1E-05 28.3 0.7 18 230-247 1-18 (26)
81 smart00367 LRR_CC Leucine-rich 82.8 1.2 2.7E-05 26.6 2.2 23 205-227 1-24 (26)
82 PF08387 FBD: FBD; InterPro: 81.1 0.92 2E-05 32.3 1.4 37 383-422 14-50 (51)
83 smart00579 FBD domain in FBox 77.3 0.65 1.4E-05 35.7 -0.4 43 513-558 2-44 (72)
84 KOG0274 Cdc4 and related F-box 76.6 1.2 2.5E-05 48.6 1.3 39 28-66 103-141 (537)
85 PF13013 F-box-like_2: F-box-l 75.9 2.1 4.6E-05 35.8 2.3 39 32-70 21-63 (109)
86 PF00560 LRR_1: Leucine Rich R 73.4 2.1 4.5E-05 24.4 1.2 14 185-198 1-14 (22)
87 PF13504 LRR_7: Leucine rich r 63.3 6.5 0.00014 20.9 1.7 13 185-197 2-14 (17)
88 KOG4579 Leucine-rich repeat (L 62.5 1.8 3.8E-05 37.9 -0.9 61 183-245 52-114 (177)
89 smart00368 LRR_RI Leucine rich 62.5 8.5 0.00018 23.4 2.4 22 206-227 2-23 (28)
90 smart00579 FBD domain in FBox 60.6 5.9 0.00013 30.2 1.8 39 384-425 6-44 (72)
91 KOG4579 Leucine-rich repeat (L 59.8 1.5 3.3E-05 38.3 -1.8 46 173-218 65-112 (177)
92 KOG3763 mRNA export factor TAP 59.4 5.1 0.00011 42.9 1.6 62 203-264 215-281 (585)
93 KOG3763 mRNA export factor TAP 52.7 9.5 0.00021 40.9 2.3 62 183-246 217-285 (585)
94 PF09372 PRANC: PRANC domain; 46.5 15 0.00033 29.9 2.2 25 31-55 70-94 (97)
95 KOG3926 F-box proteins [Amino 40.6 7.3 0.00016 37.7 -0.7 50 32-81 201-257 (332)
96 KOG4408 Putative Mg2+ and Co2+ 32.8 11 0.00024 37.7 -0.8 39 33-71 8-46 (386)
97 smart00370 LRR Leucine-rich re 27.8 41 0.00088 19.6 1.4 13 206-218 2-14 (26)
98 smart00369 LRR_TYP Leucine-ric 27.8 41 0.00088 19.6 1.4 13 206-218 2-14 (26)
99 PF07209 DUF1415: Protein of u 22.8 53 0.0012 30.0 1.8 17 548-564 97-116 (174)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6e-19 Score=167.02 Aligned_cols=268 Identities=24% Similarity=0.269 Sum_probs=183.9
Q ss_pred CCCCchHHHHHHHcCCChHHHHHHhhcchhhhhh------hccCCeEEEcCCCccccccccCCchhhhhhhhhhhHhHHH
Q 008452 33 ISDLPTFIIHHIMSFLPAKEAARASILSKRWEKF------HSSFPILDFDQHNFGCLADASGHTLNALRENREFRTCLAR 106 (565)
Q Consensus 33 is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~l------w~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (565)
+..|||||+..|||.|+.+|+.+.+.|||||.++ |.. ++.....+.+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p------------------------ 150 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHP------------------------ 150 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccCh------------------------
Confidence 6789999999999999999999999999999865 554 3333333321
Q ss_pred HHHHHHHHHhccccCCCCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCc
Q 008452 107 FIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFL 186 (565)
Q Consensus 107 f~~~v~~~L~~~~~~~~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L 186 (565)
+...+.+ ...+..|++.-...++ ...++.. ......++.++|++.. .....+...+..|..|
T Consensus 151 --~~l~~l~------~rgV~v~Rlar~~~~~---prlae~~--~~frsRlq~lDLS~s~-----it~stl~~iLs~C~kL 212 (419)
T KOG2120|consen 151 --DVLGRLL------SRGVIVFRLARSFMDQ---PRLAEHF--SPFRSRLQHLDLSNSV-----ITVSTLHGILSQCSKL 212 (419)
T ss_pred --hHHHHHH------hCCeEEEEcchhhhcC---chhhhhh--hhhhhhhHHhhcchhh-----eeHHHHHHHHHHHHhh
Confidence 2222222 1233333332111010 1111111 1223478999998731 2233455556679999
Q ss_pred cEEEecCccCCC--CCcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCCCccc----ccccCcccceeE
Q 008452 187 THLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLGLKLL----CISGAHKLKILT 259 (565)
Q Consensus 187 ~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~l----~i~~~~~L~~L~ 259 (565)
+.|.|.|..+++ -.....-.+|+.|+|+.+.. +..+++-++++|..|.+|+|+.|...+.. ..+-.++|+.|+
T Consensus 213 k~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LN 292 (419)
T KOG2120|consen 213 KNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLN 292 (419)
T ss_pred hhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhh
Confidence 999999999988 34556778999999999998 89999999999999999999999874432 111249999999
Q ss_pred ccccc-----ccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccccc
Q 008452 260 METLS-----SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACS 334 (565)
Q Consensus 260 l~~c~-----~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~ 334 (565)
+++|. +.+..+.-.||+|..|+++++.. +++ .+...+.+++.|+.|.++.|.
T Consensus 293 lsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~----------------------l~~-~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 293 LSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM----------------------LKN-DCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhHhhhhhhHHHHHHHhCCceeeeccccccc----------------------cCc-hHHHHHHhcchheeeehhhhc
Confidence 99997 33344445889999999988873 334 444556789999999999997
Q ss_pred cccccc----ccCCcccEEeecCCc---ChhhccccCCCcc
Q 008452 335 SFERIT----ISSNQLKHLSLVHCA---SLKAINIDAPNLL 368 (565)
Q Consensus 335 ~~~~l~----~~~~~L~~L~L~~C~---~L~~L~i~~p~L~ 368 (565)
.+..-. -+-+.|..|++.+|- +++.+....|++.
T Consensus 350 ~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 350 DIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred CCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 764321 134788899988885 4555555566553
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.64 E-value=3.7e-17 Score=161.75 Aligned_cols=41 Identities=24% Similarity=0.510 Sum_probs=35.3
Q ss_pred CCchHHHHHHHcCCChHHHHHHhhcchhhhhh------hccCCeEEE
Q 008452 35 DLPTFIIHHIMSFLPAKEAARASILSKRWEKF------HSSFPILDF 75 (565)
Q Consensus 35 ~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~l------w~~~~~l~f 75 (565)
.||.|++.+|||+|.++.++|++++|+-|..+ |..++.++|
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~ 120 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTF 120 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcc
Confidence 59999999999999999999999999999865 666554444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.44 E-value=4.8e-13 Score=156.88 Aligned_cols=258 Identities=14% Similarity=0.109 Sum_probs=150.2
Q ss_pred hCCcEEEEEEeCCCCcCcccccccCcccc-cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452 153 ENGVKELDFQILPDIKDYVHTYTLPQTVF-SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH 231 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp 231 (565)
.++++.|+|... .....+|..++ .+++|++|+|++|.+........+++|++|+|++|.++.. +...+..++
T Consensus 92 l~~L~~L~Ls~n------~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~ 164 (968)
T PLN00113 92 LPYIQTINLSNN------QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFS 164 (968)
T ss_pred CCCCCEEECCCC------ccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCC
Confidence 467888887652 12235777666 6788888888888776522235678888888888877322 233466788
Q ss_pred CCceeEeeecCCCccc--ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccc
Q 008452 232 FLEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRA 307 (565)
Q Consensus 232 ~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~ 307 (565)
+|++|+|++|...+.+ .+..+++|+.|++++|. .+...-.+ .+++|+.|++++|.+ ....+..++.+++|+.|++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL-SGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc-CCcCChhHhcCCCCCEEEC
Confidence 8888888887653322 34456788888888775 11111223 567788888877775 4445556777777777776
Q ss_pred cccc-hHHHHHHhcCCCCcceeecccccccccccc---cCCcccEEeecCCcChhhcc---ccCCCccceeEecCCCC--
Q 008452 308 FNLL-GQEFCTLISKFPLLEDLSLFACSSFERITI---SSNQLKHLSLVHCASLKAIN---IDAPNLLSCNFWYNPFP-- 378 (565)
Q Consensus 308 ~~i~-~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~---~~~~L~~L~L~~C~~L~~L~---i~~p~L~~~~~~g~~~~-- 378 (565)
.+.. ...++..+.++++|+.|+|.+|...+.++. ...+|+.|++++|.-...+. -..++|+.+.+.++...
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence 6332 224455566777788887777644333321 23567777776663111110 12345666665555431
Q ss_pred ----ceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452 379 ----IISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLS 425 (565)
Q Consensus 379 ----~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~ 425 (565)
+..+.+|+.+++..+...+..+ ..+.++++|+.|+++.+.
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~~~~p-------~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFSGEIP-------KNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCcCcCC-------hHHhCCCCCcEEECCCCe
Confidence 2223456666665433222222 234455556666655444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.39 E-value=1e-12 Score=154.13 Aligned_cols=304 Identities=18% Similarity=0.121 Sum_probs=150.2
Q ss_pred hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452 153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC 230 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c 230 (565)
..++++|++... .....+|..+..+++|++|.|++|.+.. +..+..+++|++|+|++|.+... +...+..+
T Consensus 235 l~~L~~L~L~~n------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l 307 (968)
T PLN00113 235 LTSLNHLDLVYN------NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQL 307 (968)
T ss_pred CCCCCEEECcCc------eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCC
Confidence 357888888652 1223567777777888888888877654 55566777888888887776322 33445667
Q ss_pred cCCceeEeeecCCCccc--ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452 231 HFLEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR 306 (565)
Q Consensus 231 p~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 306 (565)
++|+.|++.+|...+.+ .+..+++|+.|++++|. .+...-.+ ..++|+.|++++|.+ ....+..+..+++|+.|+
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l-~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL-TGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee-EeeCChhHhCcCCCCEEE
Confidence 77777777777553322 23345677777777664 11111112 456666666666554 222223333334444443
Q ss_pred cccc-chHHH------------------------HHHhcCCCCcceeeccccccccccc---ccCCcccEEeecCCcChh
Q 008452 307 AFNL-LGQEF------------------------CTLISKFPLLEDLSLFACSSFERIT---ISSNQLKHLSLVHCASLK 358 (565)
Q Consensus 307 ~~~i-~~~~l------------------------~~l~~~~~~L~~L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~ 358 (565)
+... -...+ +..+.++++|+.|++++|...+.++ ...++|+.|++++|.-..
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 3311 11122 2233344444445544442222221 123455555555543111
Q ss_pred hcc--ccCCCccceeEecCCCC------ceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccc
Q 008452 359 AIN--IDAPNLLSCNFWYNPFP------IISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLF 430 (565)
Q Consensus 359 ~L~--i~~p~L~~~~~~g~~~~------~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~ 430 (565)
.+. ...++|+.+.++++... +..+.+|+.+++..|...+..+ ..+.++++|++|+++.+.... .
T Consensus 467 ~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-------~~~~~l~~L~~L~Ls~N~l~~-~ 538 (968)
T PLN00113 467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP-------DELSSCKKLVSLDLSHNQLSG-Q 538 (968)
T ss_pred ecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC-------hHHcCccCCCEEECCCCcccc-c
Confidence 110 12234555555554331 1122355555554433222222 245667777777777666221 3
Q ss_pred cccccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHhhhcCCeeeecc
Q 008452 431 NLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLST 483 (565)
Q Consensus 431 ~~~~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~ 483 (565)
+|..|.. .++|+.|.+... .... .+...+.....|+++.++.
T Consensus 539 ~p~~~~~-----l~~L~~L~Ls~N-~l~~-----~~p~~l~~l~~L~~l~ls~ 580 (968)
T PLN00113 539 IPASFSE-----MPVLSQLDLSQN-QLSG-----EIPKNLGNVESLVQVNISH 580 (968)
T ss_pred CChhHhC-----cccCCEEECCCC-cccc-----cCChhHhcCcccCEEeccC
Confidence 4555544 234666665421 0110 1122233455677777743
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.34 E-value=5.5e-12 Score=149.11 Aligned_cols=121 Identities=24% Similarity=0.246 Sum_probs=64.9
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF 232 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~ 232 (565)
++++.|.+... ....+|..+ ...+|+.|+|.++.+.. +.....+++|+.|+|+++..- ..+. -++.+++
T Consensus 589 ~~Lr~L~~~~~-------~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip-~ls~l~~ 658 (1153)
T PLN03210 589 PKLRLLRWDKY-------PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIP-DLSMATN 658 (1153)
T ss_pred cccEEEEecCC-------CCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCC-ccccCCc
Confidence 35777777652 234555443 45677777777766655 445556677777777655320 0011 1445666
Q ss_pred CceeEeeecCCCccc--ccccCcccceeEcccccccccchh--hcCccccEeeecCC
Q 008452 233 LEDLNFFECLGLKLL--CISGAHKLKILTMETLSSELKGVK--IVASSLQQLTLQFP 285 (565)
Q Consensus 233 Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~~~l~~i~--~~~p~L~~L~l~~~ 285 (565)
|+.|+|.+|..+..+ .+..+++|+.|++++|. .+..+. +++++|+.|++++|
T Consensus 659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~-~L~~Lp~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE-NLEILPTGINLKSLYRLNLSGC 714 (1153)
T ss_pred ccEEEecCCCCccccchhhhccCCCCEEeCCCCC-CcCccCCcCCCCCCCEEeCCCC
Confidence 666666666554433 22335566666666654 333322 24455555555554
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.23 E-value=6.4e-11 Score=140.14 Aligned_cols=252 Identities=17% Similarity=0.155 Sum_probs=128.5
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCcc-CCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCK-LEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF 232 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~-l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~ 232 (565)
.++++|++.. .....+|..+..+++|+.|+|++|. +...+....+++|++|+|++|..- ..+...+..+++
T Consensus 611 ~~L~~L~L~~-------s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~ 682 (1153)
T PLN03210 611 ENLVKLQMQG-------SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNK 682 (1153)
T ss_pred cCCcEEECcC-------ccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCC
Confidence 3555555544 1223445555556666666666653 222334555666666666665431 112233455666
Q ss_pred CceeEeeecCCCcccccc-cCcccceeEcccccccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccc
Q 008452 233 LEDLNFFECLGLKLLCIS-GAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL 311 (565)
Q Consensus 233 Le~L~L~~c~~l~~l~i~-~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~ 311 (565)
|+.|++.+|..++.+... .+++|+.|++++|. .+..+....++|++|+++++.+.. .+..+ .+++|+.|.+..+.
T Consensus 683 L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n~i~~--lP~~~-~l~~L~~L~l~~~~ 758 (1153)
T PLN03210 683 LEDLDMSRCENLEILPTGINLKSLYRLNLSGCS-RLKSFPDISTNISWLDLDETAIEE--FPSNL-RLENLDELILCEMK 758 (1153)
T ss_pred CCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC-CccccccccCCcCeeecCCCcccc--ccccc-cccccccccccccc
Confidence 666666666655544321 24566666666664 333333334566666666655411 11111 23444444433221
Q ss_pred hHHHH--------HHhcCCCCcceeecccccccccccc---cCCcccEEeecCCcChhhccc--cCCCccceeEecCCC-
Q 008452 312 GQEFC--------TLISKFPLLEDLSLFACSSFERITI---SSNQLKHLSLVHCASLKAINI--DAPNLLSCNFWYNPF- 377 (565)
Q Consensus 312 ~~~l~--------~l~~~~~~L~~L~L~~C~~~~~l~~---~~~~L~~L~L~~C~~L~~L~i--~~p~L~~~~~~g~~~- 377 (565)
...+. ......++|+.|+|++|..+..++. .+++|+.|+|++|.+++.+.. ..++|+.+.++|+..
T Consensus 759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL 838 (1153)
T ss_pred hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcc
Confidence 11110 0112345677777777765555543 346677777777777766532 235666777766542
Q ss_pred -Ccee-cccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452 378 -PIIS-INSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLS 425 (565)
Q Consensus 378 -~~~~-~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~ 425 (565)
.+.. ..+++.+++..+. +..+...+.++++|++|++..++
T Consensus 839 ~~~p~~~~nL~~L~Ls~n~--------i~~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 839 RTFPDISTNISDLNLSRTG--------IEEVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred ccccccccccCEeECCCCC--------CccChHHHhcCCCCCEEECCCCC
Confidence 1111 1345655554311 22344456777778888777655
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.95 E-value=5.4e-10 Score=115.43 Aligned_cols=141 Identities=16% Similarity=0.145 Sum_probs=80.3
Q ss_pred cEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCC--CcccccccCcccceeEccc
Q 008452 187 THLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLG--LKLLCISGAHKLKILTMET 262 (565)
Q Consensus 187 ~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~--l~~l~i~~~~~L~~L~l~~ 262 (565)
+.|++++|++.. +..+.++|+|++++|.+|.+ ..+........+|+.|+|.+|.. ++.-.+..+|.|++|+++.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchh--hhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 456777766665 45556677777777776655 33444444455677777766643 1111223356777777776
Q ss_pred ccccccch---hh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHH-HhcCCCCcceeeccc
Q 008452 263 LSSELKGV---KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCT-LISKFPLLEDLSLFA 332 (565)
Q Consensus 263 c~~~l~~i---~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~-l~~~~~~L~~L~L~~ 332 (565)
+. +..| .+ .-+++++|++++|.+ +.-....|.++.+|..|++++.....++. .+.++|+|+.|+|..
T Consensus 159 N~--is~i~~~sfp~~~ni~~L~La~N~I-t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 159 NL--ISEIPKPSFPAKVNIKKLNLASNRI-TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred ch--hhcccCCCCCCCCCceEEeeccccc-cccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 63 3333 23 225677777777766 33334455666666666666443333332 355677777777766
No 8
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.94 E-value=1.8e-10 Score=114.81 Aligned_cols=172 Identities=22% Similarity=0.379 Sum_probs=76.4
Q ss_pred CccEEEecCccCCC----CCcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCCCcccccc----cCccc
Q 008452 185 FLTHLRLAGCKLEQ----PCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLGLKLLCIS----GAHKL 255 (565)
Q Consensus 185 ~L~~L~L~~c~l~~----~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~----~~~~L 255 (565)
.|++|.|.||.-.. .....++|+++.|.+.+|.. ++..+..+...|+.|+.|++..|..++...+. +|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45555555542221 22233455555555555554 55555555555555555555555554443221 25555
Q ss_pred ceeEccccc----ccccchhhcCccccEeeecCCCCCCCCcee-eccccccccccccc---ccchHHHHHHhcCCCCcce
Q 008452 256 KILTMETLS----SELKGVKIVASSLQQLTLQFPFEGQGTPVV-DIAVCPNLKKFRAF---NLLGQEFCTLISKFPLLED 327 (565)
Q Consensus 256 ~~L~l~~c~----~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~~~---~i~~~~l~~l~~~~~~L~~ 327 (565)
++|+++.|+ .+++.+...+.+++.+...||.-....... .-+.+..+..+++. .++|..+..+...+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 555555555 223333334444444444444310000000 00111112222211 2445555555555555555
Q ss_pred eeccccccccc-----ccccCCcccEEeecCCcC
Q 008452 328 LSLFACSSFER-----ITISSNQLKHLSLVHCAS 356 (565)
Q Consensus 328 L~L~~C~~~~~-----l~~~~~~L~~L~L~~C~~ 356 (565)
|..++|..+++ +...+.+|+.|.+..|..
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ 332 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccch
Confidence 55555544433 223445555555555553
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.91 E-value=1.2e-10 Score=120.85 Aligned_cols=159 Identities=17% Similarity=0.057 Sum_probs=121.5
Q ss_pred cccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCc-cccc
Q 008452 172 HTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLK-LLCI 249 (565)
Q Consensus 172 ~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~-~l~i 249 (565)
....+|..+|..+.|+.|+|+.|.+.. |.....-+++-.|+|++|.+. ..-..+..+...|-.|+|+.++.-. .-.+
T Consensus 91 KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQI 169 (1255)
T ss_pred ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHH
Confidence 455789999999999999999998887 777788899999999999881 1123445567778888998886411 1123
Q ss_pred ccCcccceeEcccccccccchh---h-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCc
Q 008452 250 SGAHKLKILTMETLSSELKGVK---I-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLL 325 (565)
Q Consensus 250 ~~~~~L~~L~l~~c~~~l~~i~---~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L 325 (565)
..+..|++|.+++++ +..+. + .+.+|+.|+++++...-..++.++..+.||+.++++...--.+++-+-++++|
T Consensus 170 RRL~~LqtL~Ls~NP--L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~L 247 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNP--LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNL 247 (1255)
T ss_pred HHHhhhhhhhcCCCh--hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhh
Confidence 346789999999885 33332 2 45677788888887644557778889999999999887777788888899999
Q ss_pred ceeecccc
Q 008452 326 EDLSLFAC 333 (565)
Q Consensus 326 ~~L~L~~C 333 (565)
++|.|++.
T Consensus 248 rrLNLS~N 255 (1255)
T KOG0444|consen 248 RRLNLSGN 255 (1255)
T ss_pred heeccCcC
Confidence 99999985
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.90 E-value=6.8e-10 Score=114.70 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=56.2
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH 231 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp 231 (565)
++++++.+.. .....+|.......+|+.|.|.+|.+.. ......+|.|++|+|+.|.+++-. ..-+..-+
T Consensus 102 ~nLq~v~l~~-------N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~-~~sfp~~~ 173 (873)
T KOG4194|consen 102 PNLQEVNLNK-------NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP-KPSFPAKV 173 (873)
T ss_pred Ccceeeeecc-------chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc-CCCCCCCC
Confidence 4555555544 3344455444444455555555555444 223344555555555555441100 00112223
Q ss_pred CCceeEeeecCC--CcccccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452 232 FLEDLNFFECLG--LKLLCISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 232 ~Le~L~L~~c~~--l~~l~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
+|++|+|+.|.. +..=.+.++.+|..|.++.+. +.+....+ ++|.|+.|++..|.+
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 455555555543 111122334455555555553 22222233 355555555555543
No 11
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5.6e-09 Score=99.95 Aligned_cols=181 Identities=23% Similarity=0.236 Sum_probs=120.8
Q ss_pred HHHhCCcEEEEEEeCCCCcCcccccccCcc-cccCCCccEEEecCccCCC---CCcccCCCcCcEEEcCCeeechHHHHH
Q 008452 150 LAIENGVKELDFQILPDIKDYVHTYTLPQT-VFSANFLTHLRLAGCKLEQ---PCYAMCFLSLKKLHLYGVYITEQMVQK 225 (565)
Q Consensus 150 ~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~c~l~~---~~~~~~l~~Lk~L~L~~~~~~~~~l~~ 225 (565)
....+||..+++.-... ....+... .-.-..|++|+|++-.+.. ......|..||.|+|.++.++|....
T Consensus 155 ~l~~rgV~v~Rlar~~~-----~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~- 228 (419)
T KOG2120|consen 155 RLLSRGVIVFRLARSFM-----DQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN- 228 (419)
T ss_pred HHHhCCeEEEEcchhhh-----cCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-
Confidence 34557998888763211 11111111 1112468999998865554 33446788899999999988766443
Q ss_pred HHhcCcCCceeEeeecCCCccc----ccccCcccceeEcccccc--cccchhh--cCccccEeeecCCCCCCCCceeecc
Q 008452 226 LLHECHFLEDLNFFECLGLKLL----CISGAHKLKILTMETLSS--ELKGVKI--VASSLQQLTLQFPFEGQGTPVVDIA 297 (565)
Q Consensus 226 ll~~cp~Le~L~L~~c~~l~~l----~i~~~~~L~~L~l~~c~~--~l~~i~~--~~p~L~~L~l~~~~~~~~~~~~~l~ 297 (565)
-+....+|+.|+|+.|.+++.- -+.+|.+|..|+++.|.. ....+.+ --++|..|+++|+..
T Consensus 229 ~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr---------- 298 (419)
T KOG2120|consen 229 TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR---------- 298 (419)
T ss_pred HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh----------
Confidence 4566788999999999887753 345688999999998861 1111122 346788888877763
Q ss_pred cccccccccccccchHHHHHHhcCCCCcceeecccccccccc----cccCCcccEEeecCCcCh
Q 008452 298 VCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERI----TISSNQLKHLSLVHCASL 357 (565)
Q Consensus 298 ~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l----~~~~~~L~~L~L~~C~~L 357 (565)
+.....+..+...||+|..|+|++|..+..- -...+.|++|.++.|..+
T Consensus 299 -----------nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 299 -----------NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred -----------hhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 2334456677889999999999999766541 124588999999999755
No 12
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.63 E-value=3e-08 Score=70.14 Aligned_cols=35 Identities=34% Similarity=0.710 Sum_probs=31.1
Q ss_pred CCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhh
Q 008452 33 ISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFH 67 (565)
Q Consensus 33 is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw 67 (565)
|+.||+||+.+||++|+.+|+++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999864
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.62 E-value=4.5e-09 Score=109.43 Aligned_cols=155 Identities=18% Similarity=0.122 Sum_probs=84.7
Q ss_pred cccCcccc-cCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCC-Ccc--cc
Q 008452 174 YTLPQTVF-SANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLG-LKL--LC 248 (565)
Q Consensus 174 ~~lp~~l~-~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~-l~~--l~ 248 (565)
-.+|..++ ++..|-.|+|++|++.. |+....+.+|++|.|++|.+....+.. +.....|+.|.+++... +.. .+
T Consensus 139 etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 139 ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-CccchhhhhhhcccccchhhcCCCc
Confidence 34444443 34455556666665555 555555666666666666553322322 22344455555554432 111 12
Q ss_pred cccCcccceeEcccccccccchh---hcCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCc
Q 008452 249 ISGAHKLKILTMETLSSELKGVK---IVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLL 325 (565)
Q Consensus 249 i~~~~~L~~L~l~~c~~~l~~i~---~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L 325 (565)
+.++.+|+.++++.+ .+..+. ...++|+.|++++|.+ .......+.-.+|++|.++...-..++..+.+++.|
T Consensus 218 ld~l~NL~dvDlS~N--~Lp~vPecly~l~~LrrLNLS~N~i--teL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL 293 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSEN--NLPIVPECLYKLRNLRRLNLSGNKI--TELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKL 293 (1255)
T ss_pred hhhhhhhhhcccccc--CCCcchHHHhhhhhhheeccCcCce--eeeeccHHHHhhhhhhccccchhccchHHHhhhHHH
Confidence 223556666666655 343332 2667777777777774 223333444566777777766666677777777777
Q ss_pred ceeecccc
Q 008452 326 EDLSLFAC 333 (565)
Q Consensus 326 ~~L~L~~C 333 (565)
+.|.+.+.
T Consensus 294 ~kLy~n~N 301 (1255)
T KOG0444|consen 294 TKLYANNN 301 (1255)
T ss_pred HHHHhccC
Confidence 77777654
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.60 E-value=1.6e-07 Score=104.95 Aligned_cols=244 Identities=13% Similarity=0.068 Sum_probs=137.1
Q ss_pred HhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452 152 IENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC 230 (565)
Q Consensus 152 ~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c 230 (565)
...+..+|.+.. .....+|..+. ++|+.|+|++|.+.. +... +++|++|+|++|.++ .+...+ .
T Consensus 176 l~~~~~~L~L~~-------~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lt--sLP~~l--~ 240 (754)
T PRK15370 176 LKNNKTELRLKI-------LGLTTIPACIP--EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLT--SIPATL--P 240 (754)
T ss_pred cccCceEEEeCC-------CCcCcCCcccc--cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCccc--cCChhh--h
Confidence 334667777765 23345665442 578999999988877 3322 368999999988773 122211 3
Q ss_pred cCCceeEeeecCCCcccccccCcccceeEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccc
Q 008452 231 HFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFN 309 (565)
Q Consensus 231 p~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~ 309 (565)
+.|+.|+|++|.. ..+...-..+|+.|+++++ .+..+.. -.++|+.|++++|.+.. .+..+ .++|+.|++.+
T Consensus 241 ~~L~~L~Ls~N~L-~~LP~~l~s~L~~L~Ls~N--~L~~LP~~l~~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~ 313 (754)
T PRK15370 241 DTIQEMELSINRI-TELPERLPSALQSLDLFHN--KISCLPENLPEELRYLSVYDNSIRT--LPAHL--PSGITHLNVQS 313 (754)
T ss_pred ccccEEECcCCcc-CcCChhHhCCCCEEECcCC--ccCccccccCCCCcEEECCCCcccc--Ccccc--hhhHHHHHhcC
Confidence 4788999988864 2332111357888888876 4444433 23578899998887622 12112 13566666553
Q ss_pred cchHHHHHHhcCCCCcceeeccccccccccccc-CCcccEEeecCCcChhhcccc-CCCccceeEecCCC---Cceeccc
Q 008452 310 LLGQEFCTLISKFPLLEDLSLFACSSFERITIS-SNQLKHLSLVHCASLKAINID-APNLLSCNFWYNPF---PIISINS 384 (565)
Q Consensus 310 i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~-~~~L~~L~L~~C~~L~~L~i~-~p~L~~~~~~g~~~---~~~~~~s 384 (565)
..-..++.. ..++|+.|++.+|. +..++.. +++|+.|+++++ ++..+.-. .++|+.+.++++.. |-....+
T Consensus 314 N~Lt~LP~~--l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~~s 389 (754)
T PRK15370 314 NSLTALPET--LPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKN-QITVLPETLPPTITTLDVSRNALTNLPENLPAA 389 (754)
T ss_pred CccccCCcc--ccccceeccccCCc-cccCChhhcCcccEEECCCC-CCCcCChhhcCCcCEEECCCCcCCCCCHhHHHH
Confidence 222222221 12578888888763 3333321 257778877776 34433211 14566676666653 1122235
Q ss_pred ccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452 385 QCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLS 425 (565)
Q Consensus 385 L~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~ 425 (565)
|+.+++..|... ..+ ..+..+...++.+..|.+..++
T Consensus 390 L~~LdLs~N~L~-~LP---~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 390 LQIMQASRNNLV-RLP---ESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHhhccCCcc-cCc---hhHHHHhhcCCCccEEEeeCCC
Confidence 666666543221 111 1244556666777777777666
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.57 E-value=9.5e-08 Score=97.28 Aligned_cols=159 Identities=18% Similarity=0.076 Sum_probs=89.0
Q ss_pred ccEEEEEEeccCCCCCchHHHHHHHHH-HhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCc
Q 008452 125 IQKLRIVIGVLDPEHLPPLLDKWIALA-IENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCY 201 (565)
Q Consensus 125 i~~l~l~~~~~~~~~~~~~i~~wi~~~-~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~ 201 (565)
++.+.+..... ....+....... ..++++++.+....-.........++..+..+++|+.|++++|.+.. ...
T Consensus 25 L~~l~l~~~~l----~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 25 LQVLRLEGNTL----GEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred ccEEeecCCCC----cHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 66776666541 122222222211 22458888776531100001112233445567789999999887763 222
Q ss_pred ccCC---CcCcEEEcCCeeechHHHHH---HHhcC-cCCceeEeeecCCCcc----c--ccccCcccceeEccccc-c--
Q 008452 202 AMCF---LSLKKLHLYGVYITEQMVQK---LLHEC-HFLEDLNFFECLGLKL----L--CISGAHKLKILTMETLS-S-- 265 (565)
Q Consensus 202 ~~~l---~~Lk~L~L~~~~~~~~~l~~---ll~~c-p~Le~L~L~~c~~l~~----l--~i~~~~~L~~L~l~~c~-~-- 265 (565)
+..+ ++|+.|++++|.+++..... .+..+ ++|++|++.+|..... + .+..+++|+.|++++|. .
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 3333 45999999888885444333 34455 8889999988875311 1 12335678888888875 1
Q ss_pred cccchh--h-cCccccEeeecCCCC
Q 008452 266 ELKGVK--I-VASSLQQLTLQFPFE 287 (565)
Q Consensus 266 ~l~~i~--~-~~p~L~~L~l~~~~~ 287 (565)
++..+. + ..++|++|++++|.+
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCcc
Confidence 112222 1 346888888888765
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.56 E-value=5.9e-08 Score=98.80 Aligned_cols=131 Identities=15% Similarity=0.021 Sum_probs=70.8
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--------CCcccCCCcCcEEEcCCeeech---HH
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--------PCYAMCFLSLKKLHLYGVYITE---QM 222 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--------~~~~~~l~~Lk~L~L~~~~~~~---~~ 222 (565)
.+++++.+....-. ......++..+...++|+.|.++++.+.. ...+..+++|+.|+|+++.+.. ..
T Consensus 23 ~~L~~l~l~~~~l~--~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 23 LCLQVLRLEGNTLG--EEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred hhccEEeecCCCCc--HHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 35888887763211 01123455555566778888888776551 1233456778888887777732 22
Q ss_pred HHHHHhcCcCCceeEeeecCCCc----cc--ccccC-cccceeEccccc-c--cccchh--h-cCccccEeeecCCCC
Q 008452 223 VQKLLHECHFLEDLNFFECLGLK----LL--CISGA-HKLKILTMETLS-S--ELKGVK--I-VASSLQQLTLQFPFE 287 (565)
Q Consensus 223 l~~ll~~cp~Le~L~L~~c~~l~----~l--~i~~~-~~L~~L~l~~c~-~--~l~~i~--~-~~p~L~~L~l~~~~~ 287 (565)
+..+... ++|++|++++|.... .+ .+..+ ++|+.|++++|. . ....+. + .+++|++|+++++.+
T Consensus 101 ~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 101 LESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 3333444 568888887775421 01 12223 667777777764 1 111111 1 345666666666654
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.49 E-value=6.4e-07 Score=99.86 Aligned_cols=114 Identities=20% Similarity=0.107 Sum_probs=69.4
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL 233 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L 233 (565)
.+-..|++.. .....+|..+. ++|+.|.+.+|.+...+ ...++|++|+|++|.++. +.. ..++|
T Consensus 201 ~~~~~LdLs~-------~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP--~lp~~Lk~LdLs~N~Lts--LP~---lp~sL 264 (788)
T PRK15387 201 NGNAVLNVGE-------SGLTTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS--LPV---LPPGL 264 (788)
T ss_pred CCCcEEEcCC-------CCCCcCCcchh--cCCCEEEccCCcCCCCC--CCCCCCcEEEecCCccCc--ccC---ccccc
Confidence 4556666655 23346676554 37888888888877622 235788888888887731 221 24677
Q ss_pred ceeEeeecCCCcccccccCcccceeEcccccccccchhhcCccccEeeecCCCC
Q 008452 234 EDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFE 287 (565)
Q Consensus 234 e~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~ 287 (565)
++|++..|.. +.+.- ...+|+.|.+++| .+..+....++|+.|++++|.+
T Consensus 265 ~~L~Ls~N~L-~~Lp~-lp~~L~~L~Ls~N--~Lt~LP~~p~~L~~LdLS~N~L 314 (788)
T PRK15387 265 LELSIFSNPL-THLPA-LPSGLCKLWIFGN--QLTSLPVLPPGLQELSVSDNQL 314 (788)
T ss_pred ceeeccCCch-hhhhh-chhhcCEEECcCC--ccccccccccccceeECCCCcc
Confidence 8888877743 22211 1256777777776 4444444456777777777765
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=6.2e-08 Score=97.51 Aligned_cols=151 Identities=17% Similarity=0.116 Sum_probs=104.4
Q ss_pred cCCCccEEEecCccCCC-C--CcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCCCcc---cccccCcc
Q 008452 182 SANFLTHLRLAGCKLEQ-P--CYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLGLKL---LCISGAHK 254 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l~~-~--~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~---l~i~~~~~ 254 (565)
+.+.|+.+.|.++.+.. + .....|++++.|+|+++-+ .-..+..++...|+||.|+|+.|...-. .....+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45688888888888776 2 3567899999999999988 5566778888999999999998865221 11123688
Q ss_pred cceeEccccc---ccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccc--hHHHHHHhcCCCCcceee
Q 008452 255 LKILTMETLS---SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL--GQEFCTLISKFPLLEDLS 329 (565)
Q Consensus 255 L~~L~l~~c~---~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~--~~~l~~l~~~~~~L~~L~ 329 (565)
|+.|.+++|. ..+..+...+|+|+.|.+.+|.. .............|+.|++++.. +.........+|.|+.|.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~-~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI-ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc-cceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 9999999996 23444555789999999988842 11122223345567777776432 222234567888888888
Q ss_pred cccc
Q 008452 330 LFAC 333 (565)
Q Consensus 330 L~~C 333 (565)
+..|
T Consensus 278 ls~t 281 (505)
T KOG3207|consen 278 LSST 281 (505)
T ss_pred cccc
Confidence 8875
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.41 E-value=6.9e-08 Score=105.21 Aligned_cols=294 Identities=18% Similarity=0.081 Sum_probs=151.3
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF 232 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~ 232 (565)
..++++.+.. ...+.+|..+.+.++|+.|.|.++.+.. |..+..+.+|..|+++.+.+..- ...+..+..
T Consensus 68 ~~L~~ln~s~-------n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~--Pl~i~~lt~ 138 (1081)
T KOG0618|consen 68 SHLRQLNLSR-------NYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPI--PLVIEVLTA 138 (1081)
T ss_pred HHHhhcccch-------hhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCC--chhHHhhhH
Confidence 3566666654 3456778888888999999999998877 88888899999999999987221 111222222
Q ss_pred CceeEeeec-------------------CCCc---------------------ccccccCcccceeEcccccccccchhh
Q 008452 233 LEDLNFFEC-------------------LGLK---------------------LLCISGAHKLKILTMETLSSELKGVKI 272 (565)
Q Consensus 233 Le~L~L~~c-------------------~~l~---------------------~l~i~~~~~L~~L~l~~c~~~l~~i~~ 272 (565)
++.+..++| .... .+....+++|+.|....+ .+..+.+
T Consensus 139 ~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn--~ls~l~~ 216 (1081)
T KOG0618|consen 139 EEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERN--QLSELEI 216 (1081)
T ss_pred HHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhc--ccceEEe
Confidence 222222222 1100 111222334444333332 4445555
Q ss_pred cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccccccccccccc---CCcccEE
Q 008452 273 VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITIS---SNQLKHL 349 (565)
Q Consensus 273 ~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~---~~~L~~L 349 (565)
.-|+|+.|....|.. + ....-..-.+|+++++++..-..+++++..|.+|+.|......- .+++.. .+.|+.|
T Consensus 217 ~g~~l~~L~a~~n~l-~--~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPL-T--TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSL 292 (1081)
T ss_pred cCcchheeeeccCcc-e--eeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHH
Confidence 556666666666654 1 01111122356677777666666777788888888887766321 111110 0122222
Q ss_pred eecC------------CcChhhccccCCCcccee---------------EecCCC---Cc---eecccccceeeeccccc
Q 008452 350 SLVH------------CASLKAINIDAPNLLSCN---------------FWYNPF---PI---ISINSQCSWNIHFNCQD 396 (565)
Q Consensus 350 ~L~~------------C~~L~~L~i~~p~L~~~~---------------~~g~~~---~~---~~~~sL~~~~l~~~~~~ 396 (565)
.+.+ -..|++|++...+|.+|- .+.... +. .....|+.+.+..|..+
T Consensus 293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred HhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 1111 112233333332222221 000000 00 01124555555443333
Q ss_pred CCCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHhhhcC
Q 008452 397 DHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYP 476 (565)
Q Consensus 397 ~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l 476 (565)
..+- ..+.++++|+.|+++++-.. .+|.+.-+ ..+.|++|.|.. +.+..+..-+..|++|
T Consensus 373 d~c~-------p~l~~~~hLKVLhLsyNrL~--~fpas~~~----kle~LeeL~LSG-------NkL~~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 373 DSCF-------PVLVNFKHLKVLHLSYNRLN--SFPASKLR----KLEELEELNLSG-------NKLTTLPDTVANLGRL 432 (1081)
T ss_pred ccch-------hhhccccceeeeeecccccc--cCCHHHHh----chHHhHHHhccc-------chhhhhhHHHHhhhhh
Confidence 3332 37888999999999988755 44543211 133466666542 3444555556677777
Q ss_pred Ceeeec
Q 008452 477 RTLSLS 482 (565)
Q Consensus 477 ~~l~l~ 482 (565)
+||.-+
T Consensus 433 ~tL~ah 438 (1081)
T KOG0618|consen 433 HTLRAH 438 (1081)
T ss_pred HHHhhc
Confidence 777653
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.35 E-value=1.6e-08 Score=89.47 Aligned_cols=150 Identities=18% Similarity=0.067 Sum_probs=86.1
Q ss_pred ccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCc-ccccccCcccc
Q 008452 179 TVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLK-LLCISGAHKLK 256 (565)
Q Consensus 179 ~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~-~l~i~~~~~L~ 256 (565)
.+++..+++.|.|+.+++.. ++....+.+|+.|+++++++ +.+..-++..|.|+.|++.-++... .-.++++|.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 34555666666666666665 66666666677777666665 3344445666666666665443211 11233456666
Q ss_pred eeEccccc---ccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccc
Q 008452 257 ILTMETLS---SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFA 332 (565)
Q Consensus 257 ~L~l~~c~---~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~ 332 (565)
.|++.++. ..+..=-+.+..|+-|.++++.+ ...+..++.+++|+.|.+....--.++.-++.+..|++|++.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence 66666553 01111112345566667777764 3455567777777766665444445566666777777777776
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.29 E-value=1.8e-06 Score=96.44 Aligned_cols=113 Identities=19% Similarity=0.084 Sum_probs=64.6
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL 233 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L 233 (565)
.+++.|.+.. .....+|.. .++|++|+|++|.+...+ ...++|++|+|++|.+. .+..+ .+.|
T Consensus 222 ~~L~~L~L~~-------N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP--~lp~sL~~L~Ls~N~L~--~Lp~l---p~~L 284 (788)
T PRK15387 222 AHITTLVIPD-------NNLTSLPAL---PPELRTLEVSGNQLTSLP--VLPPGLLELSIFSNPLT--HLPAL---PSGL 284 (788)
T ss_pred cCCCEEEccC-------CcCCCCCCC---CCCCcEEEecCCccCccc--CcccccceeeccCCchh--hhhhc---hhhc
Confidence 4788887765 233445542 468999999999887622 23568888888888662 22222 2456
Q ss_pred ceeEeeecCCCcccccccCcccceeEcccccccccchhhcCccccEeeecCCCC
Q 008452 234 EDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFE 287 (565)
Q Consensus 234 e~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~ 287 (565)
+.|++.+|.. +.+.. ..++|+.|++++|. +..+....++|+.|.+++|.+
T Consensus 285 ~~L~Ls~N~L-t~LP~-~p~~L~~LdLS~N~--L~~Lp~lp~~L~~L~Ls~N~L 334 (788)
T PRK15387 285 CKLWIFGNQL-TSLPV-LPPGLQELSVSDNQ--LASLPALPSELCKLWAYNNQL 334 (788)
T ss_pred CEEECcCCcc-ccccc-cccccceeECCCCc--cccCCCCcccccccccccCcc
Confidence 6777766643 22221 13567777776663 333222223455555555544
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.24 E-value=1.3e-06 Score=80.07 Aligned_cols=82 Identities=22% Similarity=0.155 Sum_probs=31.8
Q ss_pred cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCC--Cccc-ccccCccccee
Q 008452 182 SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLG--LKLL-CISGAHKLKIL 258 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~--l~~l-~i~~~~~L~~L 258 (565)
.+.+|+.|+|++|.+.....+..++.|++|++++|.++.-. ..+...||+|++|.+.+|.. +..+ .+..+++|+.|
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 35688888888888877666777888888888888883210 12334688888888887754 2222 23345666666
Q ss_pred Eccccc
Q 008452 259 TMETLS 264 (565)
Q Consensus 259 ~l~~c~ 264 (565)
++.+++
T Consensus 119 ~L~~NP 124 (175)
T PF14580_consen 119 SLEGNP 124 (175)
T ss_dssp E-TT-G
T ss_pred eccCCc
Confidence 666654
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.21 E-value=2.1e-07 Score=101.57 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeee
Q 008452 143 LLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYI 218 (565)
Q Consensus 143 ~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~ 218 (565)
.++.|+..+ .+|+.+.... .....+|..++...+|+.|....|.+.. ++...++.+|++|+|..+.+
T Consensus 255 ~lp~wi~~~--~nle~l~~n~-------N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 255 NLPEWIGAC--ANLEALNANH-------NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred cchHHHHhc--ccceEecccc-------hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence 444666643 3666666554 3345666666666777777777777766 66667799999999999887
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=6.2e-07 Score=88.10 Aligned_cols=212 Identities=17% Similarity=0.178 Sum_probs=124.6
Q ss_pred CCCCccEEEEEEeccCCCCCchHHHHHHHHHHh--CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC
Q 008452 121 LKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIE--NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ 198 (565)
Q Consensus 121 ~~~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~--~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~ 198 (565)
....+.++.++... .+....+|+..++. +.+++.+++.... + .....+|..+-..
T Consensus 28 ~~~s~~~l~lsgnt-----~G~EAa~~i~~~L~~~~~L~~v~~sd~ft--G-R~~~Ei~e~L~~l--------------- 84 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNT-----FGTEAARAIAKVLASKKELREVNLSDMFT--G-RLKDEIPEALKML--------------- 84 (382)
T ss_pred ccCceEEEeccCCc-----hhHHHHHHHHHHHhhcccceeeehHhhhc--C-CcHHHHHHHHHHH---------------
Confidence 34678888887775 37778899987775 3667666654211 0 1223344332110
Q ss_pred CCcccCCCcCcEEEcCCeee---chHHHHHHHhcCcCCceeEeeecCC-----------Cccc----ccccCcccceeEc
Q 008452 199 PCYAMCFLSLKKLHLYGVYI---TEQMVQKLLHECHFLEDLNFFECLG-----------LKLL----CISGAHKLKILTM 260 (565)
Q Consensus 199 ~~~~~~l~~Lk~L~L~~~~~---~~~~l~~ll~~cp~Le~L~L~~c~~-----------l~~l----~i~~~~~L~~L~l 260 (565)
.+...++|.|++|+|+.|.+ +-..+..++++|..|++|.|.+|.. +..+ .+.+-+.|+.+..
T Consensus 85 ~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 85 SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 01223445556666666655 2345677788888888888888854 1111 1223478888888
Q ss_pred cccc---ccccch---hhcCccccEeeecCCCCCCCCc---eeecccccccccccccccc-----hHHHHHHhcCCCCcc
Q 008452 261 ETLS---SELKGV---KIVASSLQQLTLQFPFEGQGTP---VVDIAVCPNLKKFRAFNLL-----GQEFCTLISKFPLLE 326 (565)
Q Consensus 261 ~~c~---~~l~~i---~~~~p~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~~~~i~-----~~~l~~l~~~~~~L~ 326 (565)
..+. .+...+ -...|+|+.+.+..|.+..... ...+..|+.|+.|++.+.+ ...+...++.+++|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 7775 122222 1256888888888877633222 1245677888877776432 134566677888888
Q ss_pred eeecccccc--------cccccccCCcccEEeecCCc
Q 008452 327 DLSLFACSS--------FERITISSNQLKHLSLVHCA 355 (565)
Q Consensus 327 ~L~L~~C~~--------~~~l~~~~~~L~~L~L~~C~ 355 (565)
.|.+++|.. +..+.-+.+.|++|.+.++.
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 888888821 12233345677777777664
No 25
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.17 E-value=1.2e-06 Score=94.41 Aligned_cols=166 Identities=25% Similarity=0.288 Sum_probs=103.1
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCc-cCCC------CCcccCCCcCcEEEcCCee-echHHHHH
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGC-KLEQ------PCYAMCFLSLKKLHLYGVY-ITEQMVQK 225 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c-~l~~------~~~~~~l~~Lk~L~L~~~~-~~~~~l~~ 225 (565)
++++++.+..+... ....+-.....++.|++|++++| .... ......+++|+.|+|+.+. +++.++..
T Consensus 188 ~~L~~l~l~~~~~~----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKI----TDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred chhhHhhhcccccC----ChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 56777766653221 11113344556788888888873 2211 2344567888888888888 58888888
Q ss_pred HHhcCcCCceeEeeecCCCccccc----ccCcccceeEccccc----ccccchhhcCccccEeeecCCCCCCCCceeecc
Q 008452 226 LLHECHFLEDLNFFECLGLKLLCI----SGAHKLKILTMETLS----SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIA 297 (565)
Q Consensus 226 ll~~cp~Le~L~L~~c~~l~~l~i----~~~~~L~~L~l~~c~----~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~ 297 (565)
+...||+||.|.+..|..++...+ ..|++|++|++++|. .++..+...||+|+.|.+.+..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------- 332 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------- 332 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-----------
Confidence 888888888888888876544322 237888888888887 2244444477887777665544
Q ss_pred cccccccccccc---cc-hHHHHHHhcCCCCcceeeccccc
Q 008452 298 VCPNLKKFRAFN---LL-GQEFCTLISKFPLLEDLSLFACS 334 (565)
Q Consensus 298 ~~~~L~~L~~~~---i~-~~~l~~l~~~~~~L~~L~L~~C~ 334 (565)
.|+.++.+.+.. .. +.........+++|+.+.|..|.
T Consensus 333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 144555444332 22 24444455677777777777664
No 26
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.15 E-value=7.6e-07 Score=63.23 Aligned_cols=37 Identities=43% Similarity=0.764 Sum_probs=31.3
Q ss_pred CCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhhcc
Q 008452 33 ISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSS 69 (565)
Q Consensus 33 is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw~~ 69 (565)
+++||++++.+||++|+.+|+++++.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 6789999999999999999999999999999987554
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.12 E-value=6.4e-06 Score=92.34 Aligned_cols=177 Identities=16% Similarity=0.142 Sum_probs=112.5
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF 232 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~ 232 (565)
.+++.|+|.. .....+|..++ ++|+.|+|++|.+.. +.. -.++|+.|+|++|.+.. +...+ ..+
T Consensus 199 ~~L~~L~Ls~-------N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~--l~~~L~~L~Ls~N~L~~--LP~~l--~s~ 263 (754)
T PRK15370 199 EQITTLILDN-------NELKSLPENLQ--GNIKTLYANSNQLTSIPAT--LPDTIQEMELSINRITE--LPERL--PSA 263 (754)
T ss_pred cCCcEEEecC-------CCCCcCChhhc--cCCCEEECCCCccccCChh--hhccccEEECcCCccCc--CChhH--hCC
Confidence 4788888876 33446777654 589999999998876 332 23589999999998731 22212 257
Q ss_pred CceeEeeecCCCcccccccCcccceeEcccccccccchhhc-CccccEeeecCCCCCCCCceeecccccccccccccccc
Q 008452 233 LEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIV-ASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL 311 (565)
Q Consensus 233 Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~-~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~ 311 (565)
|+.|++++|. ++.+.-.-.++|+.|++++| .+..+... .++|+.|++++|.+.. .+..+ .++|+.|.+.+..
T Consensus 264 L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N--~Lt~LP~~lp~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~ 336 (754)
T PRK15370 264 LQSLDLFHNK-ISCLPENLPEELRYLSVYDN--SIRTLPAHLPSGITHLNVQSNSLTA--LPETL--PPGLKTLEAGENA 336 (754)
T ss_pred CCEEECcCCc-cCccccccCCCCcEEECCCC--ccccCcccchhhHHHHHhcCCcccc--CCccc--cccceeccccCCc
Confidence 9999998774 33332222368999999998 44444332 2468889998887622 22111 2567777766443
Q ss_pred hHHHHHHhcCCCCcceeeccccccccccccc-CCcccEEeecCCc
Q 008452 312 GQEFCTLISKFPLLEDLSLFACSSFERITIS-SNQLKHLSLVHCA 355 (565)
Q Consensus 312 ~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~-~~~L~~L~L~~C~ 355 (565)
-..++..+ .++|+.|+|++|. +..++.. .+.|+.|+|++|.
T Consensus 337 Lt~LP~~l--~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 337 LTSLPASL--PPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNA 378 (754)
T ss_pred cccCChhh--cCcccEEECCCCC-CCcCChhhcCCcCEEECCCCc
Confidence 22333222 2689999998874 3333321 2578888888873
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.11 E-value=1.2e-06 Score=86.12 Aligned_cols=192 Identities=20% Similarity=0.230 Sum_probs=126.0
Q ss_pred cCCCccEEEecCccCCC------CCcccCCCcCcEEEcCCeee---chHH------HHHHHhcCcCCceeEeeecCC---
Q 008452 182 SANFLTHLRLAGCKLEQ------PCYAMCFLSLKKLHLYGVYI---TEQM------VQKLLHECHFLEDLNFFECLG--- 243 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l~~------~~~~~~l~~Lk~L~L~~~~~---~~~~------l~~ll~~cp~Le~L~L~~c~~--- 243 (565)
...+++.|+|+|+.+.. -....+-++|+..+++.... .++. +...+..||.|++|+|++|..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 45688999999988865 22334567888888887754 2222 333356899999999999965
Q ss_pred -Cccc--ccccCcccceeEcccccccccch-----------------hhcCccccEeeecCCCCCCCCc---eeeccccc
Q 008452 244 -LKLL--CISGAHKLKILTMETLSSELKGV-----------------KIVASSLQQLTLQFPFEGQGTP---VVDIAVCP 300 (565)
Q Consensus 244 -l~~l--~i~~~~~L~~L~l~~c~~~l~~i-----------------~~~~p~L~~L~l~~~~~~~~~~---~~~l~~~~ 300 (565)
+..+ -+++|..|++|.+.+|. +... .-+.|.|+.+....|...+... ...+..++
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~G--lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCG--LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCC--CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 1111 24458999999999995 2221 1156899999999988755442 23466778
Q ss_pred cccccccc--ccch---HHHHHHhcCCCCcceeecccccc--ccc--cc---ccCCcccEEeecCCcCh---------hh
Q 008452 301 NLKKFRAF--NLLG---QEFCTLISKFPLLEDLSLFACSS--FER--IT---ISSNQLKHLSLVHCASL---------KA 359 (565)
Q Consensus 301 ~L~~L~~~--~i~~---~~l~~l~~~~~~L~~L~L~~C~~--~~~--l~---~~~~~L~~L~L~~C~~L---------~~ 359 (565)
.|+.+++. .|.. ..+..-+..|++|+.|+|.++.. .+. +. ...++|+.|++.+|- | ..
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a 264 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA 264 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHH
Confidence 88876655 3333 34455678999999999998621 111 11 134678999999994 2 22
Q ss_pred ccccCCCccceeEecCC
Q 008452 360 INIDAPNLLSCNFWYNP 376 (565)
Q Consensus 360 L~i~~p~L~~~~~~g~~ 376 (565)
+.-.+|+|+.+++.|+.
T Consensus 265 l~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNE 281 (382)
T ss_pred HhccCCCCceeccCcch
Confidence 22345677776666553
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.09 E-value=3e-06 Score=77.72 Aligned_cols=103 Identities=18% Similarity=0.129 Sum_probs=32.3
Q ss_pred cCCCccEEEecCccCCCCCccc-CCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc-cc-ccCccccee
Q 008452 182 SANFLTHLRLAGCKLEQPCYAM-CFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL-CI-SGAHKLKIL 258 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l~~~~~~~-~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l-~i-~~~~~L~~L 258 (565)
++..+++|+|.|+.+......+ .+.+|++|+|++|.+.. ++. +..++.|++|++++|...+.- .+ ..+|+|+.|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 4557899999999887733343 57889999999998821 222 445788888888888653211 12 236788888
Q ss_pred Eccccc-ccccchh-h-cCccccEeeecCCCC
Q 008452 259 TMETLS-SELKGVK-I-VASSLQQLTLQFPFE 287 (565)
Q Consensus 259 ~l~~c~-~~l~~i~-~-~~p~L~~L~l~~~~~ 287 (565)
.++++. ..+..+. + .+|+|+.|++.+|++
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 887775 2333332 2 577788888877775
No 30
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.03 E-value=4.4e-06 Score=56.93 Aligned_cols=34 Identities=38% Similarity=0.649 Sum_probs=31.5
Q ss_pred CchHHHHHHHcCCChHHHHHHhhcchhhhhhhcc
Q 008452 36 LPTFIIHHIMSFLPAKEAARASILSKRWEKFHSS 69 (565)
Q Consensus 36 LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw~~ 69 (565)
||++++.+||++|+.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=4.4e-06 Score=84.43 Aligned_cols=151 Identities=16% Similarity=0.029 Sum_probs=100.7
Q ss_pred cCCCccEEEecCccCCCC---CcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcccc
Q 008452 182 SANFLTHLRLAGCKLEQP---CYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHKLK 256 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l~~~---~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~L~ 256 (565)
.+++|+.|+|+.|.+..+ ..-..+++||+|.|+.|.++...+..++..||.|+.|.|..|..+.. .+..-+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 468999999999987652 22246899999999999999889999999999999999999964221 1112257899
Q ss_pred eeEccccc-cccc--chhhcCccccEeeecCCCCCCCCcee-----ecccccccccccccccch--HHHHHHhcCCCCcc
Q 008452 257 ILTMETLS-SELK--GVKIVASSLQQLTLQFPFEGQGTPVV-----DIAVCPNLKKFRAFNLLG--QEFCTLISKFPLLE 326 (565)
Q Consensus 257 ~L~l~~c~-~~l~--~i~~~~p~L~~L~l~~~~~~~~~~~~-----~l~~~~~L~~L~~~~i~~--~~l~~l~~~~~~L~ 326 (565)
.|+++++. -.+. ...-..|.|+.|+++.+.+.+-..+. .....+.|+.|.+..... -....-+..+++|+
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK 329 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence 99999886 1122 22236788999988887762222111 123457777777653222 11122234556677
Q ss_pred eeeccc
Q 008452 327 DLSLFA 332 (565)
Q Consensus 327 ~L~L~~ 332 (565)
.|.+..
T Consensus 330 ~l~~~~ 335 (505)
T KOG3207|consen 330 HLRITL 335 (505)
T ss_pred hhhccc
Confidence 776543
No 32
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.81 E-value=4.5e-07 Score=80.37 Aligned_cols=142 Identities=14% Similarity=0.086 Sum_probs=103.3
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF 232 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~ 232 (565)
.++..|.|+- .....+|+.+....+|+.|.+.++.+.. |.....++.|+.|++..+++ ..+.+=+..+|.
T Consensus 33 s~ITrLtLSH-------NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~ 103 (264)
T KOG0617|consen 33 SNITRLTLSH-------NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPA 103 (264)
T ss_pred hhhhhhhccc-------CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCch
Confidence 3556666665 4567788888889999999999998888 88888999999999988766 223444677999
Q ss_pred CceeEeeecCCCccc---ccccCcccceeEcccccccccch--hh-cCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452 233 LEDLNFFECLGLKLL---CISGAHKLKILTMETLSSELKGV--KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR 306 (565)
Q Consensus 233 Le~L~L~~c~~l~~l---~i~~~~~L~~L~l~~c~~~l~~i--~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 306 (565)
||.|+|.++..-... .+.....|+.|.++++. ++.+ .+ ...+|+.|.+.++.. ...+..++.+..|+.|+
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dnd--fe~lp~dvg~lt~lqil~lrdndl--l~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND--FEILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDLTRLRELH 179 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCC--cccCChhhhhhcceeEEeeccCch--hhCcHHHHHHHHHHHHh
Confidence 999999988642221 11125788888888874 3333 33 678888999988875 34566777888888776
Q ss_pred cc
Q 008452 307 AF 308 (565)
Q Consensus 307 ~~ 308 (565)
+.
T Consensus 180 iq 181 (264)
T KOG0617|consen 180 IQ 181 (264)
T ss_pred cc
Confidence 64
No 33
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.80 E-value=5.7e-08 Score=96.67 Aligned_cols=158 Identities=20% Similarity=0.116 Sum_probs=83.0
Q ss_pred ccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc-c
Q 008452 171 VHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL-C 248 (565)
Q Consensus 171 ~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l-~ 248 (565)
.....+|+.+.....++.|..+.+++.. |+..+.+++|+.|+.+.+.+. .+..-++.|-.|++|+..++...+.. .
T Consensus 78 n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~--el~~~i~~~~~l~dl~~~~N~i~slp~~ 155 (565)
T KOG0472|consen 78 NKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK--ELPDSIGRLLDLEDLDATNNQISSLPED 155 (565)
T ss_pred chhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee--ecCchHHHHhhhhhhhccccccccCchH
Confidence 4456677777777777777777776666 666677777777777777651 11222344566677766666442211 1
Q ss_pred cccCcccceeEccccc-ccccchhhcCccccEeeecCCCCCCCCcee----------------------ecccccccccc
Q 008452 249 ISGAHKLKILTMETLS-SELKGVKIVASSLQQLTLQFPFEGQGTPVV----------------------DIAVCPNLKKF 305 (565)
Q Consensus 249 i~~~~~L~~L~l~~c~-~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~----------------------~l~~~~~L~~L 305 (565)
+.+|.+|..|.+.++. ..+..-.+++..|+.|+...+.. ...+. .|++|..|+.|
T Consensus 156 ~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~El 233 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKEL 233 (565)
T ss_pred HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHH
Confidence 2234455555555443 11111122334444444433332 11222 55556666655
Q ss_pred cccccchHHHHH-HhcCCCCcceeeccc
Q 008452 306 RAFNLLGQEFCT-LISKFPLLEDLSLFA 332 (565)
Q Consensus 306 ~~~~i~~~~l~~-l~~~~~~L~~L~L~~ 332 (565)
+.+...-+.++. ....+++|..|+|.+
T Consensus 234 h~g~N~i~~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 234 HVGENQIEMLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred HhcccHHHhhHHHHhcccccceeeeccc
Confidence 555444444443 334666666666665
No 34
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.77 E-value=5.1e-06 Score=89.54 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=32.1
Q ss_pred CcCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhhcc
Q 008452 31 DRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSS 69 (565)
Q Consensus 31 D~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw~~ 69 (565)
+.....|+.....+..+.+..+...+..++++|......
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 43 RFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred eeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence 456788999999999999988888888889999876444
No 35
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.72 E-value=1.8e-05 Score=87.92 Aligned_cols=150 Identities=20% Similarity=0.231 Sum_probs=106.1
Q ss_pred CCccEEEecCccCCC----CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeE
Q 008452 184 NFLTHLRLAGCKLEQ----PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILT 259 (565)
Q Consensus 184 ~~L~~L~L~~c~l~~----~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~ 259 (565)
.+|++|+++|...-. .....-||+|++|.+++..+....+..+..++|+|..|+|+++..-.--.++.+++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 689999998853322 2345679999999999999955568889999999999999998653333466678888887
Q ss_pred ccccc--ccccchhh-cCccccEeeecCCCCCCCCc-----eeeccccccccccccc--ccchHHHHHHhcCCCCcceee
Q 008452 260 METLS--SELKGVKI-VASSLQQLTLQFPFEGQGTP-----VVDIAVCPNLKKFRAF--NLLGQEFCTLISKFPLLEDLS 329 (565)
Q Consensus 260 l~~c~--~~l~~i~~-~~p~L~~L~l~~~~~~~~~~-----~~~l~~~~~L~~L~~~--~i~~~~l~~l~~~~~~L~~L~ 329 (565)
+.+-. ....-+.+ ++.+|+.|++|......... ...-..+|+|+.|+.+ .++.+.+..++..-|+|+.+.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 77543 12222344 78899999998876522220 0111247888888766 567777888888788888887
Q ss_pred cccc
Q 008452 330 LFAC 333 (565)
Q Consensus 330 L~~C 333 (565)
.-+|
T Consensus 282 ~~~~ 285 (699)
T KOG3665|consen 282 ALDC 285 (699)
T ss_pred hhhh
Confidence 6655
No 36
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.45 E-value=2.3e-06 Score=85.44 Aligned_cols=157 Identities=20% Similarity=0.125 Sum_probs=99.4
Q ss_pred cccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccc
Q 008452 172 HTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCIS 250 (565)
Q Consensus 172 ~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~ 250 (565)
....+|..+++|.+|..|.+.++.+.. ++...+++.|+.|+..++-+ +.+..=+++...|+.|.+..+....--.+.
T Consensus 148 ~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef~ 225 (565)
T KOG0472|consen 148 QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEFP 225 (565)
T ss_pred ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCCC
Confidence 345566666666666666666666655 44444466666666666544 223333455666777777776543333566
Q ss_pred cCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCccee
Q 008452 251 GAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDL 328 (565)
Q Consensus 251 ~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L 328 (565)
+|..|+.|++..+. ..+..-.. +.++|..|++.++.. ...+..+.-+++|+.|++++.+-..++.-++++ .|+.|
T Consensus 226 gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl--ke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 226 GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL--KEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFL 302 (565)
T ss_pred ccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc--ccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeeh
Confidence 77888888877763 12222122 677788888888875 445666667777888888777666777667777 77777
Q ss_pred ecccc
Q 008452 329 SLFAC 333 (565)
Q Consensus 329 ~L~~C 333 (565)
.+.+.
T Consensus 303 ~leGN 307 (565)
T KOG0472|consen 303 ALEGN 307 (565)
T ss_pred hhcCC
Confidence 77764
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.00053 Score=66.46 Aligned_cols=200 Identities=15% Similarity=0.094 Sum_probs=132.8
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH 231 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp 231 (565)
..|++++|.... ..|| -.+-..+..++.|+.|+|+.|.+.+ ........+|++|.|.+..++-......+...|
T Consensus 71 ~~v~elDL~~N~-iSdW---seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 71 TDVKELDLTGNL-ISDW---SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhhhhhhcccch-hccH---HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 478888887521 1122 1233334567899999999998876 222246779999999999887777888899999
Q ss_pred CCceeEeeecCC----Ccc--cccccCcccceeEccccc----ccccchhhcCccccEeeecCCCCCCCCceeecccccc
Q 008452 232 FLEDLNFFECLG----LKL--LCISGAHKLKILTMETLS----SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPN 301 (565)
Q Consensus 232 ~Le~L~L~~c~~----l~~--l~i~~~~~L~~L~l~~c~----~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~ 301 (565)
.+++|+++.|.. +.. ..-. .+.++.|+...|. .....+.-..||+.++-+..+++.+..........+.
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~-s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~ 225 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDW-STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPS 225 (418)
T ss_pred hhhhhhhccchhhhhcccccccccc-chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCc
Confidence 999999998843 111 1111 2788899999986 2334445567999999999988644444445555666
Q ss_pred ccccccc--ccchHHHHHHhcCCCCcceeecccccccccccccCCcccEEeecCCcChhhc
Q 008452 302 LKKFRAF--NLLGQEFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAI 360 (565)
Q Consensus 302 L~~L~~~--~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~~~~L~~L~L~~C~~L~~L 360 (565)
+..|.++ +|.+=.-.+-+.++|.|..|.+...+-.+.+. +..=+.|-+...++++.|
T Consensus 226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~--~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR--GGERRFLLIARLTKVQVL 284 (418)
T ss_pred chhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc--CCcceEEEEeeccceEEe
Confidence 6666665 34333334457789999999998865554443 233344556666666655
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.26 E-value=5.8e-05 Score=72.91 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=41.3
Q ss_pred ccccccCcccccCCCccEEEecCcc--CCC--------CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeee
Q 008452 171 VHTYTLPQTVFSANFLTHLRLAGCK--LEQ--------PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFE 240 (565)
Q Consensus 171 ~~~~~lp~~l~~~~~L~~L~L~~c~--l~~--------~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~ 240 (565)
...|.+...+--|..|+.|..++.. +.. +.....|++|+++.++.|.- +.+..+...=|.|+.+.+..
T Consensus 169 ~~k~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 169 GGKYDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHN 246 (490)
T ss_pred CCccchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch--hheeceeecCchhheeeeec
Confidence 3445555555557788888888742 211 23334577888888877743 44445555567777776654
Q ss_pred c
Q 008452 241 C 241 (565)
Q Consensus 241 c 241 (565)
.
T Consensus 247 s 247 (490)
T KOG1259|consen 247 T 247 (490)
T ss_pred c
Confidence 3
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.20 E-value=0.0001 Score=73.88 Aligned_cols=121 Identities=16% Similarity=0.079 Sum_probs=76.9
Q ss_pred CccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc---cccCcccceeE
Q 008452 185 FLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC---ISGAHKLKILT 259 (565)
Q Consensus 185 ~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~---i~~~~~L~~L~ 259 (565)
.-+.++|+.|.+.. +..|..+++|+.|+|++|.++.=+ ..-+.+.+.|-.|.+.++..++++. +.++.+|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 45888999988887 556788999999999999872211 1234556778888888876766653 33466777777
Q ss_pred ccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccc
Q 008452 260 METLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRA 307 (565)
Q Consensus 260 l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~ 307 (565)
+.-|. +-+..-.+ ++++|..|.+.++.+ .......+..+..++.+.+
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhh
Confidence 76653 11222223 678888888877764 2223334555555554443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.09 E-value=0.0002 Score=53.58 Aligned_cols=58 Identities=21% Similarity=0.135 Sum_probs=34.6
Q ss_pred CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecC
Q 008452 184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECL 242 (565)
Q Consensus 184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 242 (565)
++|++|.+++|.+.. +..+.++++|++|+|+++.+..- -...+.++|+|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 356777777776665 34556677777777777666210 11234566666666666653
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.00 E-value=0.00062 Score=75.93 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=24.3
Q ss_pred ccccccccccc--cchHHHHHHhcCCCCcceeecccc
Q 008452 299 CPNLKKFRAFN--LLGQEFCTLISKFPLLEDLSLFAC 333 (565)
Q Consensus 299 ~~~L~~L~~~~--i~~~~l~~l~~~~~~L~~L~L~~C 333 (565)
+|.|++|.+.+ ...+++..+..+||||..||++++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT 183 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCC
Confidence 34444444432 345668888999999999999985
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.99 E-value=0.00021 Score=81.77 Aligned_cols=102 Identities=21% Similarity=0.139 Sum_probs=68.5
Q ss_pred cCCCccEEEecCcc--CCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCccc
Q 008452 182 SANFLTHLRLAGCK--LEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKL 255 (565)
Q Consensus 182 ~~~~L~~L~L~~c~--l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L 255 (565)
.|+.|++|-+.++. +.. ...+..+|.|+.|+|++|.- ...+...++..-+|++|+++++.. +.+ .+..+.+|
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~I-~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTGI-SHLPSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCCc-cccchHHHHHHhh
Confidence 45678888888874 333 23377889999999998643 233566677888899999888753 222 23446788
Q ss_pred ceeEcccccccccch---hhcCccccEeeecCCC
Q 008452 256 KILTMETLSSELKGV---KIVASSLQQLTLQFPF 286 (565)
Q Consensus 256 ~~L~l~~c~~~l~~i---~~~~p~L~~L~l~~~~ 286 (565)
.+|++.... .+..+ .-.+++|++|.+....
T Consensus 621 ~~Lnl~~~~-~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTG-RLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heecccccc-ccccccchhhhcccccEEEeeccc
Confidence 888888765 32222 2247888888876554
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.98 E-value=0.00038 Score=67.39 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=32.4
Q ss_pred CcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEccccc-ccccchhhcCccccEeeecC
Q 008452 206 LSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS-SELKGVKIVASSLQQLTLQF 284 (565)
Q Consensus 206 ~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~-~~l~~i~~~~p~L~~L~l~~ 284 (565)
..|++|+|++|.+ ..+...+.-.|.++.|+++.|.....-++..+++|+.|+++++. ..+.......-|++.|.+++
T Consensus 284 q~LtelDLS~N~I--~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLI--TQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccch--hhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 3455555555544 11222223345555555555543222222234555555555442 11122222344445555544
Q ss_pred CC
Q 008452 285 PF 286 (565)
Q Consensus 285 ~~ 286 (565)
|.
T Consensus 362 N~ 363 (490)
T KOG1259|consen 362 NK 363 (490)
T ss_pred hh
Confidence 43
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.87 E-value=0.0003 Score=75.66 Aligned_cols=200 Identities=18% Similarity=0.096 Sum_probs=112.9
Q ss_pred cCCCCccEEEEEEeccCCCCCchHHHHHHH-HHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC
Q 008452 120 NLKFSIQKLRIVIGVLDPEHLPPLLDKWIA-LAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ 198 (565)
Q Consensus 120 ~~~~~i~~l~l~~~~~~~~~~~~~i~~wi~-~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~ 198 (565)
..+.+.+.|+..... ..+...+...-. .-+....+.+.+...+. ..++. |..++..++|+.|.|.+|.+..
T Consensus 52 ~~g~~~~~f~a~~s~---~ads~vl~qLq~i~d~lqkt~~lkl~~~pa----~~pt~-pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 52 LSGAPVDYFRAYVSD---NADSRVLEQLQRILDFLQKTKVLKLLPSPA----RDPTE-PISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred cCCCCCceeEEecCC---cccchHHHHHHHHHHHHhhheeeeecccCC----CCCCC-CceeccccceeeEEecCcchhh
Confidence 456778888766553 122333332211 11234667777766544 22333 8889999999999999997754
Q ss_pred CCccc---------------------------------CCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCc
Q 008452 199 PCYAM---------------------------------CFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLK 245 (565)
Q Consensus 199 ~~~~~---------------------------------~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~ 245 (565)
..+.. .+..|.+.+++.|.+ ..+...+.-.|.||.|+|++|...+
T Consensus 124 ~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~ 201 (1096)
T KOG1859|consen 124 AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTK 201 (1096)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhh
Confidence 11110 112344444444443 1222334446778888888887654
Q ss_pred ccccccCcccceeEccccc-ccccchhhcCccccEeeecCCCCCCCCceeeccccccccccccccc--chHHHHHHhcCC
Q 008452 246 LLCISGAHKLKILTMETLS-SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNL--LGQEFCTLISKF 322 (565)
Q Consensus 246 ~l~i~~~~~L~~L~l~~c~-~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i--~~~~l~~l~~~~ 322 (565)
.-.+..|++|++|+|+++. ..+..+....-.|.-|.+++|... ....+.++.+|+.|+++.. .+..-...+..+
T Consensus 202 v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~---tL~gie~LksL~~LDlsyNll~~hseL~pLwsL 278 (1096)
T KOG1859|consen 202 VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALT---TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSL 278 (1096)
T ss_pred hHHHHhcccccccccccchhccccccchhhhhheeeeecccHHH---hhhhHHhhhhhhccchhHhhhhcchhhhHHHHH
Confidence 4455557888888888874 223333332223888888887742 2335566667777766532 222222234455
Q ss_pred CCcceeeccc
Q 008452 323 PLLEDLSLFA 332 (565)
Q Consensus 323 ~~L~~L~L~~ 332 (565)
..|+.|.|.+
T Consensus 279 s~L~~L~LeG 288 (1096)
T KOG1859|consen 279 SSLIVLWLEG 288 (1096)
T ss_pred HHHHHHhhcC
Confidence 6667777766
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.84 E-value=0.00096 Score=70.18 Aligned_cols=148 Identities=19% Similarity=0.107 Sum_probs=94.7
Q ss_pred cccCCCccEEEecCccCCC-CCcccCCC-cCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccc-cCcccc
Q 008452 180 VFSANFLTHLRLAGCKLEQ-PCYAMCFL-SLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCIS-GAHKLK 256 (565)
Q Consensus 180 l~~~~~L~~L~L~~c~l~~-~~~~~~l~-~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~-~~~~L~ 256 (565)
+...+.++.|.+.++.+.. ++....+. +|+.|+++.+.+. .+..-+..+|+|+.|++..|.....-... ..+.|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchh--hhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 3344678888888888777 44555553 8999999888762 22234677889999998888653322221 358888
Q ss_pred eeEcccccccccchhh--cCcc-ccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccc
Q 008452 257 ILTMETLSSELKGVKI--VASS-LQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFAC 333 (565)
Q Consensus 257 ~L~l~~c~~~l~~i~~--~~p~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C 333 (565)
.|.++++ .+..+.. ..++ |++|.++++.. ...+..+..+.++..+.+.+.....+...+.++++|+.|+++++
T Consensus 190 ~L~ls~N--~i~~l~~~~~~~~~L~~l~~~~N~~--~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 190 NLDLSGN--KISDLPPEIELLSALEELDLSNNSI--IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred heeccCC--ccccCchhhhhhhhhhhhhhcCCcc--eecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence 8888887 4444433 2444 88888888742 22333455555565555443333333566777778888888864
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.75 E-value=0.0013 Score=49.07 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=46.0
Q ss_pred CCcEEEEEEeCCCCcCcccccccCccc-ccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeee
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTV-FSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI 218 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~ 218 (565)
+++++|++.. .....+|... ..+++|++|++++|.+.. +..+.++++|++|+|++|.+
T Consensus 1 p~L~~L~l~~-------n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSN-------NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETS-------STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCC-------CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3677788766 3455677654 458999999999999987 56789999999999999853
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.0017 Score=63.04 Aligned_cols=154 Identities=16% Similarity=0.104 Sum_probs=99.4
Q ss_pred CcccccCCCccEEEecCccCCC----CCcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCCCcc---cc
Q 008452 177 PQTVFSANFLTHLRLAGCKLEQ----PCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLGLKL---LC 248 (565)
Q Consensus 177 p~~l~~~~~L~~L~L~~c~l~~----~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~---l~ 248 (565)
+..+++...++-|.+.+|.++. ......+..++.|+|.+|.+ +-..+..++.+.|.|+.|+|++|+.-.. +.
T Consensus 38 ~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp 117 (418)
T KOG2982|consen 38 YLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP 117 (418)
T ss_pred eeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc
Confidence 3344444567788888888876 33345678999999999999 5556888999999999999999976332 22
Q ss_pred cccCcccceeEccccc---ccccchhhcCccccEeeecCCCCC----CCCceeecccccccccccccccc---hHHHHHH
Q 008452 249 ISGAHKLKILTMETLS---SELKGVKIVASSLQQLTLQFPFEG----QGTPVVDIAVCPNLKKFRAFNLL---GQEFCTL 318 (565)
Q Consensus 249 i~~~~~L~~L~l~~c~---~~l~~i~~~~p~L~~L~l~~~~~~----~~~~~~~l~~~~~L~~L~~~~i~---~~~l~~l 318 (565)
.+ ..+|+.|.+.+.. .......-+.|.++.|+++.|... ++..... --+.+++|+..... ......+
T Consensus 118 ~p-~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l 194 (418)
T KOG2982|consen 118 LP-LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLNKNKL 194 (418)
T ss_pred cc-ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc--cchhhhhhhcCCcHHHHHHHHHhH
Confidence 22 3689999998865 223333347888999999888431 1111111 11234444433221 1233445
Q ss_pred hcCCCCcceeecccc
Q 008452 319 ISKFPLLEDLSLFAC 333 (565)
Q Consensus 319 ~~~~~~L~~L~L~~C 333 (565)
..-|||+..+.+..|
T Consensus 195 ~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEG 209 (418)
T ss_pred HhhcccchheeeecC
Confidence 667888888888776
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.59 E-value=0.0016 Score=68.55 Aligned_cols=166 Identities=19% Similarity=0.121 Sum_probs=117.5
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCC-CccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSAN-FLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH 231 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~-~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp 231 (565)
..+..+.+.. .....+|......+ +|+.|+++++.+.. +.....+++|+.|+++.+.+ ..+.......+
T Consensus 116 ~~l~~L~l~~-------n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l--~~l~~~~~~~~ 186 (394)
T COG4886 116 TNLTSLDLDN-------NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL--SDLPKLLSNLS 186 (394)
T ss_pred cceeEEecCC-------cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh--hhhhhhhhhhh
Confidence 3577777765 45667777777774 99999999999887 45778999999999999988 33444455789
Q ss_pred CCceeEeeecCCCccccc--ccCcccceeEcccccccccchh-h-cCccccEeeecCCCCCCCCceeecccccccccccc
Q 008452 232 FLEDLNFFECLGLKLLCI--SGAHKLKILTMETLSSELKGVK-I-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRA 307 (565)
Q Consensus 232 ~Le~L~L~~c~~l~~l~i--~~~~~L~~L~l~~c~~~l~~i~-~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~ 307 (565)
.|+.|+++++.. ..+.. .....|+.|.+.++. ....+. + ...++..+.+.++.. ...+..++.+++++.|++
T Consensus 187 ~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~--~~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 187 NLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKL--EDLPESIGNLSNLETLDL 262 (394)
T ss_pred hhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCcee--eeccchhccccccceecc
Confidence 999999999865 22222 123459999998873 222222 2 667777777766664 222456778888888888
Q ss_pred cccchHHHHHHhcCCCCcceeecccc
Q 008452 308 FNLLGQEFCTLISKFPLLEDLSLFAC 333 (565)
Q Consensus 308 ~~i~~~~l~~l~~~~~~L~~L~L~~C 333 (565)
.+.....+.. +....+|+.|++++.
T Consensus 263 s~n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 263 SNNQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred cccccccccc-ccccCccCEEeccCc
Confidence 7554444444 778889999999874
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.42 E-value=0.001 Score=63.50 Aligned_cols=61 Identities=23% Similarity=0.049 Sum_probs=42.4
Q ss_pred HhcCcCCceeEeeecCCCcccccccCcccceeEccccc----ccccchhhcCccccEeeecCCCC
Q 008452 227 LHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS----SELKGVKIVASSLQQLTLQFPFE 287 (565)
Q Consensus 227 l~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~----~~l~~i~~~~p~L~~L~l~~~~~ 287 (565)
.-....|+.|.+.++...+....+.+|+|+.|.++.++ .++......||+|+.|++++|.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 33445566666666655555556667888888888773 45666666789999999999986
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.42 E-value=0.0048 Score=63.88 Aligned_cols=12 Identities=33% Similarity=0.431 Sum_probs=6.1
Q ss_pred CCceeEeeecCC
Q 008452 232 FLEDLNFFECLG 243 (565)
Q Consensus 232 ~Le~L~L~~c~~ 243 (565)
+|++|.+.+|..
T Consensus 95 nLe~L~Ls~Cs~ 106 (426)
T PRK15386 95 GLEKLTVCHCPE 106 (426)
T ss_pred hhhheEccCccc
Confidence 455555555543
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.36 E-value=0.0025 Score=61.16 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=77.4
Q ss_pred CCCccEEEecCccCCC--C----CcccCCCcCcEEEcCCeee---chH------HHHHHHhcCcCCceeEeeecCCCcc-
Q 008452 183 ANFLTHLRLAGCKLEQ--P----CYAMCFLSLKKLHLYGVYI---TEQ------MVQKLLHECHFLEDLNFFECLGLKL- 246 (565)
Q Consensus 183 ~~~L~~L~L~~c~l~~--~----~~~~~l~~Lk~L~L~~~~~---~~~------~l~~ll~~cp~Le~L~L~~c~~l~~- 246 (565)
...++.++|+||.+.. . ....+-.+|+..+++.... .++ .+-..+..||+|+..+|++|..-..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 3455566666665544 1 1122345556666655433 111 1223345688888888877755111
Q ss_pred ---c--ccccCcccceeEcccccccccch-----h------------hcCccccEeeecCCCCCCCCcee---ecccccc
Q 008452 247 ---L--CISGAHKLKILTMETLSSELKGV-----K------------IVASSLQQLTLQFPFEGQGTPVV---DIAVCPN 301 (565)
Q Consensus 247 ---l--~i~~~~~L~~L~l~~c~~~l~~i-----~------------~~~p~L~~L~l~~~~~~~~~~~~---~l~~~~~ 301 (565)
+ -|++...|++|.+++|. +..+ + -+.|.|+.+....|.+.+++... .+.+-.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG--lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG--LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC--CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 1 13334777778777774 2222 1 14678888887777653333211 2233345
Q ss_pred ccccccc--ccchHHHHHH----hcCCCCcceeecccc
Q 008452 302 LKKFRAF--NLLGQEFCTL----ISKFPLLEDLSLFAC 333 (565)
Q Consensus 302 L~~L~~~--~i~~~~l~~l----~~~~~~L~~L~L~~C 333 (565)
|+.+.+. .|..+++..+ +..+.+|+.|+|.+.
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence 5555443 3444433322 345678888888774
No 52
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.00051 Score=65.97 Aligned_cols=112 Identities=21% Similarity=0.182 Sum_probs=70.7
Q ss_pred CCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEccccc-ccccchh-h-cCccccEee
Q 008452 205 FLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS-SELKGVK-I-VASSLQQLT 281 (565)
Q Consensus 205 l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~-~~l~~i~-~-~~p~L~~L~ 281 (565)
+.+.|+|++++|.++|- .+...+|.||.|.|+-|...+--.+..|.+|+.|.+..+. ..+..+. + ++|+|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 45567777777766543 2345677777777777654332234447777777777654 3444443 2 789999998
Q ss_pred ecCCCCCCC----CceeecccccccccccccccchHHHHHHh
Q 008452 282 LQFPFEGQG----TPVVDIAVCPNLKKFRAFNLLGQEFCTLI 319 (565)
Q Consensus 282 l~~~~~~~~----~~~~~l~~~~~L~~L~~~~i~~~~l~~l~ 319 (565)
+..|+-... +-...+..+|||+.|+...++..++...+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~AL 136 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEAL 136 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHH
Confidence 877764111 11234567889999988878777766554
No 53
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.30 E-value=0.0035 Score=63.16 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=45.5
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccc-cCCCccEEEecCccCCC--CCcccCCCcCcEEEcCC-eee
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVF-SANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYG-VYI 218 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~-~~~ 218 (565)
++..+|+|+- .....+|+..| ..++|+.|+|+.|.+.. +..|.++++|.+|.+.+ +.+
T Consensus 67 ~~tveirLdq-------N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 67 PETVEIRLDQ-------NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred CcceEEEecc-------CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 4667777765 34567777655 47999999999998877 77888999999998877 665
No 54
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.24 E-value=0.0015 Score=74.87 Aligned_cols=190 Identities=19% Similarity=0.201 Sum_probs=106.2
Q ss_pred cCCCccEEEecCc-cCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc-ccc-cCcccce
Q 008452 182 SANFLTHLRLAGC-KLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL-CIS-GAHKLKI 257 (565)
Q Consensus 182 ~~~~L~~L~L~~c-~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l-~i~-~~~~L~~ 257 (565)
..+.|+.|+|++| .+.. |...+.+-+||.|+|++..+. .++.-+.+...|.+|++..+..+..+ .+. .+++|++
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 3678888888876 3333 667777888888888887763 34555666777888888877654433 122 2577888
Q ss_pred eEcccccccccchh----hcCccccEeeecCCCCCCCCceeeccccccccccccc----ccchHHHHHHhcCCCCcceee
Q 008452 258 LTMETLSSELKGVK----IVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF----NLLGQEFCTLISKFPLLEDLS 329 (565)
Q Consensus 258 L~l~~c~~~l~~i~----~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~----~i~~~~l~~l~~~~~~L~~L~ 329 (565)
|.+..-........ ....+|+.|...... ......+....+|.++... ..........+..+.+|+.|.
T Consensus 647 L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s---~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ 723 (889)
T KOG4658|consen 647 LRLPRSALSNDKLLLKELENLEHLENLSITISS---VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELS 723 (889)
T ss_pred EEeeccccccchhhHHhhhcccchhhheeecch---hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEE
Confidence 77765420111111 133344444332221 1111223334444422211 112233344556778899999
Q ss_pred ccccccccccccc---------CCcccEEeecCCcChhhcc--ccCCCccceeEecCC
Q 008452 330 LFACSSFERITIS---------SNQLKHLSLVHCASLKAIN--IDAPNLLSCNFWYNP 376 (565)
Q Consensus 330 L~~C~~~~~l~~~---------~~~L~~L~L~~C~~L~~L~--i~~p~L~~~~~~g~~ 376 (565)
+.+|...+..... ++++..+.+.+|..++.+. .-+|+|.++.+.++.
T Consensus 724 i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 724 ILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred EEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence 9998665432211 2345555566777666654 467888888777654
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.18 E-value=0.0052 Score=42.47 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=19.9
Q ss_pred CccEEEecCccCCC-CCcccCCCcCcEEEcCCeee
Q 008452 185 FLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYI 218 (565)
Q Consensus 185 ~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~ 218 (565)
+|++|.+++|.+.. ++.+..+++|+.|++++|.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 56666666666666 44456666666666666655
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.17 E-value=0.0013 Score=62.77 Aligned_cols=104 Identities=22% Similarity=0.085 Sum_probs=72.9
Q ss_pred cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCC--Ccccc-cccCcccce
Q 008452 182 SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLG--LKLLC-ISGAHKLKI 257 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~--l~~l~-i~~~~~L~~ 257 (565)
....|+.|++.++.+++...+..+|+||+|.++.+.. ....+..++..||+|.+|+++.|.. +..+. +..+++|.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 4567888888888887767777889999999999955 3455777788899999999999864 22221 223577888
Q ss_pred eEccccc-cc----ccchhhcCccccEeeecCC
Q 008452 258 LTMETLS-SE----LKGVKIVASSLQQLTLQFP 285 (565)
Q Consensus 258 L~l~~c~-~~----l~~i~~~~p~L~~L~l~~~ 285 (565)
|++..|. .+ -..+..-+|+|++|+-.+.
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 8888886 22 1222335677777765443
No 57
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.04 E-value=0.0062 Score=36.74 Aligned_cols=25 Identities=44% Similarity=0.682 Sum_probs=22.7
Q ss_pred cCcEEEcCCeee-chHHHHHHHhcCc
Q 008452 207 SLKKLHLYGVYI-TEQMVQKLLHECH 231 (565)
Q Consensus 207 ~Lk~L~L~~~~~-~~~~l~~ll~~cp 231 (565)
+||+|+|..+.+ ++..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 6678999999998
No 58
>PLN03150 hypothetical protein; Provisional
Probab=96.04 E-value=0.0092 Score=66.54 Aligned_cols=78 Identities=21% Similarity=0.154 Sum_probs=49.3
Q ss_pred ccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcccceeEcc
Q 008452 186 LTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKLKILTME 261 (565)
Q Consensus 186 L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~ 261 (565)
++.|+|+++.+.. +..+..+++|+.|+|++|.+... +...+..+++|+.|+|++|...+.+ .+..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 6677777777665 55666777777777777766322 3334566777777777777553322 23445666667666
Q ss_pred ccc
Q 008452 262 TLS 264 (565)
Q Consensus 262 ~c~ 264 (565)
+|.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 664
No 59
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.0031 Score=58.09 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=67.7
Q ss_pred ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCCCcccc-
Q 008452 173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLGLKLLC- 248 (565)
Q Consensus 173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~- 248 (565)
.+.+|..-..--.++.++=+++.+.. .....+++.++.|.|.+|.. +|..++.+-.-.|+||+|+|+.|+.+++-.
T Consensus 90 ~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 90 YFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred eecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence 34566543333456777777766554 55667889999999999988 889999998899999999999999877633
Q ss_pred --cccCcccceeEccccc
Q 008452 249 --ISGAHKLKILTMETLS 264 (565)
Q Consensus 249 --i~~~~~L~~L~l~~c~ 264 (565)
+..+++|+.|.+.+-.
T Consensus 170 ~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 170 ACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHHhhhhHHHHhcCch
Confidence 2335778877777543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.59 E-value=0.02 Score=52.83 Aligned_cols=59 Identities=24% Similarity=0.216 Sum_probs=26.9
Q ss_pred CCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecC
Q 008452 183 ANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECL 242 (565)
Q Consensus 183 ~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~ 242 (565)
.+.|.+|.|.+|.+.. +.....+|+|++|.|.+|.+ .-..+.. +..||.|++|++-+++
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP 124 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence 3455555555555544 22233345555555555544 2222322 2235555555554443
No 61
>PLN03150 hypothetical protein; Provisional
Probab=95.47 E-value=0.015 Score=64.85 Aligned_cols=71 Identities=18% Similarity=0.109 Sum_probs=59.3
Q ss_pred cccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCc
Q 008452 174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLK 245 (565)
Q Consensus 174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~ 245 (565)
..+|..+..+++|+.|+|++|.+.. +..+..+++|+.|+|++|.+... +...+..+++|+.|+|++|....
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCcccc
Confidence 4677788889999999999999876 66789999999999999988433 34557889999999999997543
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.39 E-value=0.042 Score=57.07 Aligned_cols=35 Identities=20% Similarity=0.540 Sum_probs=16.9
Q ss_pred Ccceeeccccccccccccc-CCcccEEeecCCcChh
Q 008452 324 LLEDLSLFACSSFERITIS-SNQLKHLSLVHCASLK 358 (565)
Q Consensus 324 ~L~~L~L~~C~~~~~l~~~-~~~L~~L~L~~C~~L~ 358 (565)
+|+.|.+++|..++.++.. ...|+.|.+.+|.++.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS 108 (426)
T ss_pred CCcEEEccCCCCcccCCchhhhhhhheEccCccccc
Confidence 3555555555554444311 1355555555554443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.34 E-value=0.018 Score=53.17 Aligned_cols=100 Identities=19% Similarity=0.064 Sum_probs=74.1
Q ss_pred CCccEEEecCccCCCCCcccCCCcCcEEEcCCeeec--hHHHHHHHhcCcCCceeEeeecCC--Cccc-ccccCccccee
Q 008452 184 NFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYIT--EQMVQKLLHECHFLEDLNFFECLG--LKLL-CISGAHKLKIL 258 (565)
Q Consensus 184 ~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~--~~~l~~ll~~cp~Le~L~L~~c~~--l~~l-~i~~~~~L~~L 258 (565)
.....++|+++.+.....+..++.|.+|.|.+|.++ +..+ ....|+|..|.|.+|.. ++++ .+.+||+|++|
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L---~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDL---DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccch---hhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 456778888887776667788999999999999982 3333 34578999999999865 3333 34568999999
Q ss_pred Eccccc----ccccchhh-cCccccEeeecCCC
Q 008452 259 TMETLS----SELKGVKI-VASSLQQLTLQFPF 286 (565)
Q Consensus 259 ~l~~c~----~~l~~i~~-~~p~L~~L~l~~~~ 286 (565)
.+-+++ .+-....+ ..|+|+.|++..-.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999986 12222233 78999999987654
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.34 E-value=0.029 Score=38.69 Aligned_cols=36 Identities=28% Similarity=0.148 Sum_probs=26.0
Q ss_pred CcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCC
Q 008452 206 LSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLG 243 (565)
Q Consensus 206 ~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~ 243 (565)
++|++|+|+++.++ .+...++.||+|+.|++++|..
T Consensus 1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCC
Confidence 57888999988884 2555578888888888888853
No 65
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.09 E-value=0.0027 Score=68.62 Aligned_cols=80 Identities=21% Similarity=0.213 Sum_probs=42.2
Q ss_pred ccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCC--CcccccccCcccceeEcccccccccch-hh-cCccc
Q 008452 202 AMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLG--LKLLCISGAHKLKILTMETLSSELKGV-KI-VASSL 277 (565)
Q Consensus 202 ~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~--l~~l~i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~L 277 (565)
..-++.|+.|+|++|.+.+- + .+..||.|++|+|++|.. +..+...+|. |..|.++++ .+..+ .+ ++.+|
T Consensus 183 Lqll~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN--~l~tL~gie~LksL 256 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN--ALTTLRGIENLKSL 256 (1096)
T ss_pred HHHHHHhhhhccchhhhhhh--H-HHHhcccccccccccchhccccccchhhhh-heeeeeccc--HHHhhhhHHhhhhh
Confidence 33456667777777666322 1 344566777777766643 3334444433 666666655 22222 22 45555
Q ss_pred cEeeecCCCC
Q 008452 278 QQLTLQFPFE 287 (565)
Q Consensus 278 ~~L~l~~~~~ 287 (565)
+.|++++|-+
T Consensus 257 ~~LDlsyNll 266 (1096)
T KOG1859|consen 257 YGLDLSYNLL 266 (1096)
T ss_pred hccchhHhhh
Confidence 5555555543
No 66
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.04 E-value=0.024 Score=55.82 Aligned_cols=38 Identities=29% Similarity=0.572 Sum_probs=35.3
Q ss_pred CCCcCCCCc----hHHHHHHHcCCChHHHHHHhhcchhhhhh
Q 008452 29 TMDRISDLP----TFIIHHIMSFLPAKEAARASILSKRWEKF 66 (565)
Q Consensus 29 ~~D~is~LP----d~vL~~ILs~L~~~d~vr~s~lSkrWr~l 66 (565)
..|.|+.|| |+|-..|||||+..+++.+-.+||+|+++
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 358899999 99999999999999999999999999974
No 67
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=93.89 E-value=0.005 Score=64.88 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=78.9
Q ss_pred CccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCc-ccccccCcccceeEccc
Q 008452 185 FLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLK-LLCISGAHKLKILTMET 262 (565)
Q Consensus 185 ~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~-~l~i~~~~~L~~L~l~~ 262 (565)
--+..+|+.+++.. +..+..|..|..|.|+.+.+ ..+..-+.+...|..|+|+.+..-. ...+.. --|+.|-++.
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~--r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~-lpLkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCI--RTIPEAICNLEALTFLDLSSNQLSHLPDGLCD-LPLKVLIVSN 152 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccc--eecchhhhhhhHHHHhhhccchhhcCChhhhc-CcceeEEEec
Confidence 33455666666665 55666666777777766655 1122223334445555555554311 011111 2355555555
Q ss_pred cc--ccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccccccccccc
Q 008452 263 LS--SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERIT 340 (565)
Q Consensus 263 c~--~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~ 340 (565)
+. ..-..|+ ..+.|..|+.+.|.+ ...+..++.+..|+.|.........++.-+. .-.|.+||++ |+.+..|+
T Consensus 153 Nkl~~lp~~ig-~~~tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfS-cNkis~iP 227 (722)
T KOG0532|consen 153 NKLTSLPEEIG-LLPTLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFS-CNKISYLP 227 (722)
T ss_pred CccccCCcccc-cchhHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecc-cCceeecc
Confidence 43 1112222 556666666666664 2233445555555555544333333333333 3456777776 67777777
Q ss_pred ccCCcccEE
Q 008452 341 ISSNQLKHL 349 (565)
Q Consensus 341 ~~~~~L~~L 349 (565)
+...++++|
T Consensus 228 v~fr~m~~L 236 (722)
T KOG0532|consen 228 VDFRKMRHL 236 (722)
T ss_pred hhhhhhhhh
Confidence 766444433
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.72 E-value=0.072 Score=51.46 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=51.9
Q ss_pred CCccEEEEEEeccCCCCCchHHHHHHHHHHh--CCcEEEEEEeCC-CC-cC--cccccccCcccccCCCccEEEecCccC
Q 008452 123 FSIQKLRIVIGVLDPEHLPPLLDKWIALAIE--NGVKELDFQILP-DI-KD--YVHTYTLPQTVFSANFLTHLRLAGCKL 196 (565)
Q Consensus 123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~--~~l~~L~L~~~~-~~-~~--~~~~~~lp~~l~~~~~L~~L~L~~c~l 196 (565)
..+..+.+++.. .+.....|+...++ +++++.+++... +. +| +.....+.+.+..|+.|+..+|+.|.+
T Consensus 30 d~~~evdLSGNt-----igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 30 DELVEVDLSGNT-----IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred cceeEEeccCCc-----ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 456666666664 47788899987764 355555554321 10 00 011223334556788888888888877
Q ss_pred CC--CC----cccCCCcCcEEEcCCeee
Q 008452 197 EQ--PC----YAMCFLSLKKLHLYGVYI 218 (565)
Q Consensus 197 ~~--~~----~~~~l~~Lk~L~L~~~~~ 218 (565)
.. ++ ..+.-..|+.|.|++|.+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCC
Confidence 65 22 123445667777776655
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.39 E-value=0.013 Score=62.13 Aligned_cols=102 Identities=20% Similarity=0.117 Sum_probs=56.0
Q ss_pred cCCCccEEEecCccCCCCCc-ccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeE
Q 008452 182 SANFLTHLRLAGCKLEQPCY-AMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILT 259 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l~~~~~-~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~ 259 (565)
.+++|+.|.+.++.+..... ...+++|++|+|+++.+ +-..+ ..++.|+.|++.+|.....-....+++|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhccCCccchhhhccc
Confidence 44566667776666665333 55667777777777766 22222 23444777777766543222233356666677
Q ss_pred ccccc-ccccch-hhcCccccEeeecCCCC
Q 008452 260 METLS-SELKGV-KIVASSLQQLTLQFPFE 287 (565)
Q Consensus 260 l~~c~-~~l~~i-~~~~p~L~~L~l~~~~~ 287 (565)
+.++. ..+... ...+++|+.+.+.++.+
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 76664 111110 13456667677766654
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.69 E-value=0.071 Score=45.97 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=5.2
Q ss_pred ccCCCcCcEEEcC
Q 008452 202 AMCFLSLKKLHLY 214 (565)
Q Consensus 202 ~~~l~~Lk~L~L~ 214 (565)
+.++.+|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 4445555555554
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.92 E-value=0.025 Score=54.66 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=58.0
Q ss_pred CcccceeEcccccccccchhh--cCccccEeeecCCCCCCCCceeeccccccccccccc--ccchHHHHHHhcCCCCcce
Q 008452 252 AHKLKILTMETLSSELKGVKI--VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF--NLLGQEFCTLISKFPLLED 327 (565)
Q Consensus 252 ~~~L~~L~l~~c~~~l~~i~~--~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~--~i~~~~l~~l~~~~~~L~~ 327 (565)
+.+.+.|+.++| ++.-|.+ .+|.||.|.++-|.+. ....+..|++|+.|.+- .|.+-.-...+.++|+|+.
T Consensus 18 l~~vkKLNcwg~--~L~DIsic~kMp~lEVLsLSvNkIs---sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGC--GLDDISICEKMPLLEVLSLSVNKIS---SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCC--CccHHHHHHhcccceeEEeeccccc---cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 457788888998 7777766 8999999999988862 34467889999977665 3444333445789999999
Q ss_pred eecccc
Q 008452 328 LSLFAC 333 (565)
Q Consensus 328 L~L~~C 333 (565)
|.|..+
T Consensus 93 LWL~EN 98 (388)
T KOG2123|consen 93 LWLDEN 98 (388)
T ss_pred HhhccC
Confidence 999874
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.55 E-value=0.071 Score=56.49 Aligned_cols=80 Identities=20% Similarity=0.044 Sum_probs=41.6
Q ss_pred cccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCCCcccc--cccCcccc
Q 008452 180 VFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLGLKLLC--ISGAHKLK 256 (565)
Q Consensus 180 l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~--i~~~~~L~ 256 (565)
+..+++|++|+|+++.+........++.|+.|++.+|.+ +-..+ ..++.|+.+++.+|.....-. ...+.+|+
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~----~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~ 189 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGL----ESLKSLKLLDLSYNRIVDIENDELSELISLE 189 (414)
T ss_pred hhhhhcchheeccccccccccchhhccchhhheeccCcchhccCC----ccchhhhcccCCcchhhhhhhhhhhhccchH
Confidence 344566666666666665544555555566666666655 22212 125556666666654422111 13345566
Q ss_pred eeEcccc
Q 008452 257 ILTMETL 263 (565)
Q Consensus 257 ~L~l~~c 263 (565)
.+.+.++
T Consensus 190 ~l~l~~n 196 (414)
T KOG0531|consen 190 ELDLGGN 196 (414)
T ss_pred HHhccCC
Confidence 6666554
No 73
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=91.45 E-value=0.12 Score=50.72 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=31.1
Q ss_pred CCcCCCCchHHHHHHHcC-----CChHHHHHHhhcchhhhh
Q 008452 30 MDRISDLPTFIIHHIMSF-----LPAKEAARASILSKRWEK 65 (565)
Q Consensus 30 ~D~is~LPd~vL~~ILs~-----L~~~d~vr~s~lSkrWr~ 65 (565)
.+.|+.||||||..||.. |+.+++.++|+|||.|+.
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 355889999999999864 567999999999999985
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.17 E-value=0.29 Score=42.06 Aligned_cols=99 Identities=14% Similarity=0.203 Sum_probs=42.8
Q ss_pred cCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecC-CCcccccccCccccee
Q 008452 182 SANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECL-GLKLLCISGAHKLKIL 258 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~-~l~~l~i~~~~~L~~L 258 (565)
.|++|+.+.+... +.. ...+.++++|+.+.+......- -...+..|+.|+.+.+.... .+..-....+++|+.+
T Consensus 10 ~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~~~~i--~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNNLTSI--GDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETST---EE-TTTTTT-TT-SEEEESSTTSCE---TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECCC-eeEeChhhccccccccccccccccccc--ceeeeeccccccccccccccccccccccccccccccc
Confidence 4567888887642 222 4556677778888877641111 11235667778888775421 1222233335677777
Q ss_pred Ecccccccccchhh-cCccccEeeecC
Q 008452 259 TMETLSSELKGVKI-VASSLQQLTLQF 284 (565)
Q Consensus 259 ~l~~c~~~l~~i~~-~~p~L~~L~l~~ 284 (565)
.+......+..-.+ ++ +|+.+.+.+
T Consensus 87 ~~~~~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 87 DIPSNITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EETTT-BEEHTTTTTT--T--EEE-TT
T ss_pred ccCccccEEchhhhcCC-CceEEEECC
Confidence 76432112222223 33 566665544
No 75
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=91.11 E-value=0.17 Score=52.03 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=33.6
Q ss_pred cCCCCchHHHHHHHcCCC-hHHHHHHhhcchhhhhhhcc
Q 008452 32 RISDLPTFIIHHIMSFLP-AKEAARASILSKRWEKFHSS 69 (565)
Q Consensus 32 ~is~LPd~vL~~ILs~L~-~~d~vr~s~lSkrWr~lw~~ 69 (565)
..++||+|+|..|..+|+ .-|++|.+.||+.||.....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 378999999999999997 67999999999999986443
No 76
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=88.78 E-value=0.019 Score=60.67 Aligned_cols=127 Identities=18% Similarity=0.131 Sum_probs=72.6
Q ss_pred ccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc-ccccC
Q 008452 175 TLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL-CISGA 252 (565)
Q Consensus 175 ~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l-~i~~~ 252 (565)
.+|..+.+...|+.|+|+.+.+.. +.....|| |+.|-+++++++ .+..=+..-+.|..|+.++|...+-. .+.++
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~slpsql~~l 188 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL 188 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc--cCCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence 456666677777777777777766 44444443 777777777661 11111224556667777776543221 23345
Q ss_pred cccceeEcccccccccch--hhcCccccEeeecCCCCCCCCceeeccccccccccccc
Q 008452 253 HKLKILTMETLSSELKGV--KIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF 308 (565)
Q Consensus 253 ~~L~~L~l~~c~~~l~~i--~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~ 308 (565)
.+|+.|.+..+. +..+ +..+-.|..|++++|.+ ...++.|..++.|+.|.+.
T Consensus 189 ~slr~l~vrRn~--l~~lp~El~~LpLi~lDfScNki--s~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 189 TSLRDLNVRRNH--LEDLPEELCSLPLIRLDFSCNKI--SYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred HHHHHHHHhhhh--hhhCCHHHhCCceeeeecccCce--eecchhhhhhhhheeeeec
Confidence 677777777664 2222 11233477777777774 4455566666666655544
No 77
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=87.11 E-value=0.2 Score=35.77 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=31.8
Q ss_pred CCccccccccCcceeeeeeecccCCChhHHhhhhhhcCCCCC
Q 008452 510 HTKSWWHYLKDAKIESFKLIHGQKFNADELHQLIDEWPQVPD 551 (565)
Q Consensus 510 ~~~~~~~~lk~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (565)
.++|....||.|++.| ..|...|.++++++|.+++..+.
T Consensus 8 ~p~Cl~s~Lk~v~~~~---f~g~~~e~~f~~yil~na~~Lk~ 46 (51)
T PF08387_consen 8 VPECLLSHLKFVEIKG---FRGEENELEFAKYILENAPVLKK 46 (51)
T ss_pred CccchhheeEEEEEEe---eeCcHHHHHHHHHHHhhhhhhcE
Confidence 3489999999998865 55777799999999999887654
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.97 E-value=0.14 Score=47.42 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=31.0
Q ss_pred cchHHHHHHhcCCCCcceeeccccccccccccc----CCcccEEeecCCc
Q 008452 310 LLGQEFCTLISKFPLLEDLSLFACSSFERITIS----SNQLKHLSLVHCA 355 (565)
Q Consensus 310 i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~----~~~L~~L~L~~C~ 355 (565)
+.|..+..+..-.++|+.|+|++|+.++.-... .++|+.|.|.+.+
T Consensus 138 ~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 138 FDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 445556666677889999999999887765443 2556666555554
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.09 E-value=1.1 Score=26.07 Aligned_cols=22 Identities=27% Similarity=0.230 Sum_probs=13.8
Q ss_pred CCcCcEEEcCCeeechHHHHHH
Q 008452 205 FLSLKKLHLYGVYITEQMVQKL 226 (565)
Q Consensus 205 l~~Lk~L~L~~~~~~~~~l~~l 226 (565)
+++|++|+|++|.++++++..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 4678888888888876666554
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.59 E-value=0.5 Score=28.30 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=12.3
Q ss_pred CcCCceeEeeecCCCccc
Q 008452 230 CHFLEDLNFFECLGLKLL 247 (565)
Q Consensus 230 cp~Le~L~L~~c~~l~~l 247 (565)
||+|++|+|++|..+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 677777777777766543
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.83 E-value=1.2 Score=26.56 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=17.9
Q ss_pred CCcCcEEEcCCeee-chHHHHHHH
Q 008452 205 FLSLKKLHLYGVYI-TEQMVQKLL 227 (565)
Q Consensus 205 l~~Lk~L~L~~~~~-~~~~l~~ll 227 (565)
|++|+.|+|++|.. +|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 57888888888875 888887664
No 82
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=81.10 E-value=0.92 Score=32.28 Aligned_cols=37 Identities=11% Similarity=0.009 Sum_probs=27.9
Q ss_pred ccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEE
Q 008452 383 NSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSID 422 (565)
Q Consensus 383 ~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~ 422 (565)
++|+.+.+.. +.|...+ +..++++++|++.|++|+|+
T Consensus 14 s~Lk~v~~~~--f~g~~~e-~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKG--FRGEENE-LEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEe--eeCcHHH-HHHHHHHHhhhhhhcEEEEE
Confidence 4677777743 2233334 88899999999999999986
No 83
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=77.30 E-value=0.65 Score=35.67 Aligned_cols=43 Identities=9% Similarity=0.206 Sum_probs=33.9
Q ss_pred cccccccCcceeeeeeecccCCChhHHhhhhhhcCCCCCCCceeee
Q 008452 513 SWWHYLKDAKIESFKLIHGQKFNADELHQLIDEWPQVPDGDLQLHL 558 (565)
Q Consensus 513 ~~~~~lk~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (565)
|....||.|+|.+| .|...|+++++++|.+.|....=.+..+.
T Consensus 2 cl~~~Lk~v~i~~f---~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 2 CLLSSLEVLEIKGY---RGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred cchheEEEEEEEec---cCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 55667888888886 67888999999999999988765555443
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=76.62 E-value=1.2 Score=48.64 Aligned_cols=39 Identities=28% Similarity=0.511 Sum_probs=36.1
Q ss_pred CCCCcCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhh
Q 008452 28 ETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKF 66 (565)
Q Consensus 28 ~~~D~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~l 66 (565)
...|.|+.||-++..+||++|+.+++++++++|+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 346889999999999999999999999999999999864
No 85
>PF13013 F-box-like_2: F-box-like domain
Probab=75.85 E-value=2.1 Score=35.81 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=31.6
Q ss_pred cCCCCchHHHHHHHcCCChHHHHHHhhcch--hhh-h-hhccC
Q 008452 32 RISDLPTFIIHHIMSFLPAKEAARASILSK--RWE-K-FHSSF 70 (565)
Q Consensus 32 ~is~LPd~vL~~ILs~L~~~d~vr~s~lSk--rWr-~-lw~~~ 70 (565)
.+.+||+||+..|+.+-...++..++..++ ||+ + +|..+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~~L 63 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWYLL 63 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 488999999999999999999988888887 554 3 25543
No 86
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=73.45 E-value=2.1 Score=24.44 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=9.1
Q ss_pred CccEEEecCccCCC
Q 008452 185 FLTHLRLAGCKLEQ 198 (565)
Q Consensus 185 ~L~~L~L~~c~l~~ 198 (565)
+|++|+|++|.+..
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 46677777776654
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=63.26 E-value=6.5 Score=20.89 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=5.8
Q ss_pred CccEEEecCccCC
Q 008452 185 FLTHLRLAGCKLE 197 (565)
Q Consensus 185 ~L~~L~L~~c~l~ 197 (565)
+|+.|+|++|.+.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666543
No 88
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=62.48 E-value=1.8 Score=37.93 Aligned_cols=61 Identities=20% Similarity=0.103 Sum_probs=33.1
Q ss_pred CCCccEEEecCccCCC-CCcc-cCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCc
Q 008452 183 ANFLTHLRLAGCKLEQ-PCYA-MCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLK 245 (565)
Q Consensus 183 ~~~L~~L~L~~c~l~~-~~~~-~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~ 245 (565)
...|+..+|++|.+.. ++.+ ..+|-+++|+|+++.+.+--.+ +...|.|+.|+++.|+...
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCcccc
Confidence 3455556666666555 2222 3455666666666665322111 5556666666666665533
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.47 E-value=8.5 Score=23.42 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=16.3
Q ss_pred CcCcEEEcCCeeechHHHHHHH
Q 008452 206 LSLKKLHLYGVYITEQMVQKLL 227 (565)
Q Consensus 206 ~~Lk~L~L~~~~~~~~~l~~ll 227 (565)
++|++|+|++|.+++++...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5688888888888777665543
No 90
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=60.63 E-value=5.9 Score=30.22 Aligned_cols=39 Identities=18% Similarity=0.060 Sum_probs=28.4
Q ss_pred cccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452 384 SQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLS 425 (565)
Q Consensus 384 sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~ 425 (565)
+|+.+.+.. +.|...+ +..++++++|++.|++++|....
T Consensus 6 ~Lk~v~i~~--f~g~~~e-~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 6 SLEVLEIKG--YRGTEEE-KELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred eEEEEEEEe--ccCcHHH-HHHHHHHHhcchhheEEEEEeec
Confidence 456666642 2333334 78899999999999999998765
No 91
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=59.85 E-value=1.5 Score=38.33 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=33.2
Q ss_pred ccccCccccc-CCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeee
Q 008452 173 TYTLPQTVFS-ANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYI 218 (565)
Q Consensus 173 ~~~lp~~l~~-~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~ 218 (565)
.-.+|..+.. .+.++.|+|.++.+.. |..+..++.|+.|+++.|.+
T Consensus 65 fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 65 FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence 3345554433 3578888888888877 66778888888888888877
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.36 E-value=5.1 Score=42.91 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=33.0
Q ss_pred cCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCC--Ccccccc--cCcccceeEccccc
Q 008452 203 MCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLG--LKLLCIS--GAHKLKILTMETLS 264 (565)
Q Consensus 203 ~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~--l~~l~i~--~~~~L~~L~l~~c~ 264 (565)
.++|.+..++|++|++ .-+.+..+....|+|..|+|+++.. -....+. ....|++|-+.+++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence 4556666666666666 4455555666666666666666622 1111111 12555566666654
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.70 E-value=9.5 Score=40.94 Aligned_cols=62 Identities=21% Similarity=0.072 Sum_probs=36.6
Q ss_pred CCCccEEEecCccCCC----CCcccCCCcCcEEEcCCe--ee-chHHHHHHHhcCcCCceeEeeecCCCcc
Q 008452 183 ANFLTHLRLAGCKLEQ----PCYAMCFLSLKKLHLYGV--YI-TEQMVQKLLHECHFLEDLNFFECLGLKL 246 (565)
Q Consensus 183 ~~~L~~L~L~~c~l~~----~~~~~~l~~Lk~L~L~~~--~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~ 246 (565)
.+.+.++.|++|++.. .......|.|++|+|+++ .+ ++..+.. -..+.||+|-+.+|+..+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCccccc
Confidence 3566777777765544 233445677777777777 33 3333332 1345577777777766543
No 94
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=46.49 E-value=15 Score=29.90 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.8
Q ss_pred CcCCCCchHHHHHHHcCCChHHHHH
Q 008452 31 DRISDLPTFIIHHIMSFLPAKEAAR 55 (565)
Q Consensus 31 D~is~LPd~vL~~ILs~L~~~d~vr 55 (565)
..++.||-||...||++|+-+|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5689999999999999999999864
No 95
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=40.58 E-value=7.3 Score=37.72 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=40.0
Q ss_pred cCCCCchHHHHHHHcCCC-hHHHHHHhhcchhh------hhhhccCCeEEEcCCCcc
Q 008452 32 RISDLPTFIIHHIMSFLP-AKEAARASILSKRW------EKFHSSFPILDFDQHNFG 81 (565)
Q Consensus 32 ~is~LPd~vL~~ILs~L~-~~d~vr~s~lSkrW------r~lw~~~~~l~f~~~~~~ 81 (565)
.+.+||.+++..|+.+|+ -+|++.++.+-..- +++|+..-.+.|.+..+.
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~ 257 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIH 257 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 489999999999999998 79999988764443 456888777788776654
No 96
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=32.79 E-value=11 Score=37.67 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=33.7
Q ss_pred CCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhhccCC
Q 008452 33 ISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFP 71 (565)
Q Consensus 33 is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw~~~~ 71 (565)
+..+|+++++.|++|+..+++++++.+|+|-+.+-...|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 457899999999999999999999999999987644433
No 97
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=27.79 E-value=41 Score=19.64 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=8.0
Q ss_pred CcCcEEEcCCeee
Q 008452 206 LSLKKLHLYGVYI 218 (565)
Q Consensus 206 ~~Lk~L~L~~~~~ 218 (565)
++|++|+|++|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4566666666655
No 98
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=27.79 E-value=41 Score=19.64 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=8.0
Q ss_pred CcCcEEEcCCeee
Q 008452 206 LSLKKLHLYGVYI 218 (565)
Q Consensus 206 ~~Lk~L~L~~~~~ 218 (565)
++|++|+|++|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4566666666655
No 99
>PF07209 DUF1415: Protein of unknown function (DUF1415); InterPro: IPR009858 This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.
Probab=22.83 E-value=53 Score=29.97 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=12.7
Q ss_pred CCCCCCce---eeeeccccC
Q 008452 548 QVPDGDLQ---LHLDWCFND 564 (565)
Q Consensus 548 ~~~~~~~~---~~~~~~~~~ 564 (565)
++-.|-+| |||||||.+
T Consensus 97 ~~~eG~~QlAsFHP~y~F~g 116 (174)
T PF07209_consen 97 LGLEGVYQLASFHPDYQFAG 116 (174)
T ss_pred cCCCceEEEeccCccCCCCC
Confidence 55566655 899999976
Done!