Query 008452
Match_columns 565
No_of_seqs 374 out of 2252
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 03:53:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 1.6E-24 5.4E-29 238.3 20.0 299 34-353 14-351 (592)
2 2p1m_B Transport inhibitor res 99.9 5.8E-24 2E-28 233.8 19.9 218 29-263 2-245 (594)
3 2ast_B S-phase kinase-associat 99.9 1E-21 3.5E-26 200.2 10.9 37 31-67 7-43 (336)
4 4fmz_A Internalin; leucine ric 99.6 1.7E-14 5.8E-19 147.3 16.6 249 180-452 62-319 (347)
5 4fmz_A Internalin; leucine ric 99.6 1.4E-14 4.7E-19 148.0 15.9 250 153-427 65-324 (347)
6 4fcg_A Uncharacterized protein 99.6 1.9E-14 6.3E-19 146.2 13.1 199 149-360 76-293 (328)
7 2id5_A Lingo-1, leucine rich r 99.5 1.2E-14 4E-19 155.3 9.1 239 178-426 50-308 (477)
8 3rgz_A Protein brassinosteroid 99.5 4.6E-14 1.6E-18 159.7 13.2 170 153-334 177-354 (768)
9 1o6v_A Internalin A; bacterial 99.5 3.3E-13 1.1E-17 143.7 18.3 60 180-242 86-145 (466)
10 4ecn_A Leucine-rich repeat pro 99.5 1.1E-13 3.6E-18 157.2 13.5 279 153-452 447-784 (876)
11 2p1m_B Transport inhibitor res 99.5 2.9E-13 9.9E-18 148.3 16.5 171 182-352 128-346 (594)
12 4eco_A Uncharacterized protein 99.5 1.3E-13 4.3E-18 152.8 13.6 271 153-451 205-543 (636)
13 3rgz_A Protein brassinosteroid 99.5 3.2E-14 1.1E-18 161.0 8.3 155 176-333 92-257 (768)
14 3t6q_A CD180 antigen; protein- 99.5 4.6E-14 1.6E-18 155.3 9.1 274 155-452 255-555 (606)
15 1z7x_W Ribonuclease inhibitor; 99.5 5.2E-14 1.8E-18 149.4 8.4 324 151-485 25-409 (461)
16 2ast_B S-phase kinase-associat 99.5 2.2E-13 7.5E-18 138.3 12.2 191 184-374 70-281 (336)
17 1o6v_A Internalin A; bacterial 99.5 6.6E-13 2.3E-17 141.4 16.3 307 123-482 68-383 (466)
18 3v47_A TOLL-like receptor 5B a 99.4 9.3E-14 3.2E-18 147.2 8.6 285 179-483 74-404 (455)
19 3ogk_B Coronatine-insensitive 99.4 5.1E-13 1.8E-17 146.4 14.4 284 123-425 192-524 (592)
20 2id5_A Lingo-1, leucine rich r 99.4 3.9E-13 1.3E-17 143.5 11.4 286 173-482 23-328 (477)
21 2z81_A CD282 antigen, TOLL-lik 99.4 1.2E-12 4.1E-17 142.1 14.8 172 154-333 26-206 (549)
22 3bz5_A Internalin-J, INLJ; leu 99.4 1.5E-13 5E-18 146.0 7.2 101 180-287 81-182 (457)
23 3t6q_A CD180 antigen; protein- 99.4 4.2E-13 1.4E-17 147.6 10.9 275 185-483 255-556 (606)
24 3o6n_A APL1; leucine-rich repe 99.4 5.6E-13 1.9E-17 138.5 10.5 248 154-427 45-308 (390)
25 4fcg_A Uncharacterized protein 99.4 5.3E-13 1.8E-17 135.4 9.6 170 183-358 80-267 (328)
26 3v47_A TOLL-like receptor 5B a 99.4 2.8E-12 9.5E-17 135.8 13.9 303 122-452 53-403 (455)
27 3oja_B Anopheles plasmodium-re 99.4 9.5E-13 3.2E-17 144.7 10.2 229 179-427 94-337 (597)
28 3vq2_A TLR4, TOLL-like recepto 99.4 1.2E-12 4E-17 144.0 10.7 170 180-355 281-459 (606)
29 1z7x_W Ribonuclease inhibitor; 99.4 2.8E-13 9.6E-18 143.7 5.3 316 154-485 3-381 (461)
30 3o6n_A APL1; leucine-rich repe 99.3 1.2E-12 4E-17 136.0 8.3 264 153-452 68-347 (390)
31 3vq2_A TLR4, TOLL-like recepto 99.3 1.4E-12 4.7E-17 143.5 8.4 83 154-243 80-165 (606)
32 3bz5_A Internalin-J, INLJ; leu 99.3 1.4E-12 4.7E-17 138.5 8.0 295 153-483 41-348 (457)
33 3j0a_A TOLL-like receptor 5; m 99.3 6.9E-12 2.4E-16 143.4 14.2 259 154-427 48-375 (844)
34 3g06_A SSPH2 (leucine-rich rep 99.3 1.1E-11 3.8E-16 135.9 14.9 208 155-392 41-250 (622)
35 4ecn_A Leucine-rich repeat pro 99.3 5.6E-12 1.9E-16 143.1 12.0 273 152-452 489-814 (876)
36 3j0a_A TOLL-like receptor 5; m 99.3 4.2E-12 1.4E-16 145.2 11.0 278 153-452 23-370 (844)
37 4eco_A Uncharacterized protein 99.3 7.4E-12 2.5E-16 138.6 12.4 295 153-483 248-596 (636)
38 2z80_A TOLL-like receptor 2, v 99.3 1.4E-12 4.7E-17 133.6 5.5 153 179-333 71-232 (353)
39 3oja_B Anopheles plasmodium-re 99.3 4.7E-12 1.6E-16 139.1 10.1 245 153-425 98-356 (597)
40 2z63_A TOLL-like receptor 4, v 99.3 6.9E-12 2.3E-16 136.7 10.3 99 319-425 278-384 (570)
41 2z7x_B TOLL-like receptor 1, v 99.3 3.2E-11 1.1E-15 130.0 15.0 101 154-263 45-148 (520)
42 1ogq_A PGIP-2, polygalacturona 99.3 6E-12 2.1E-16 126.7 8.1 156 175-333 67-231 (313)
43 2z7x_B TOLL-like receptor 1, v 99.3 2.9E-11 1E-15 130.3 13.9 140 297-452 321-476 (520)
44 3zyj_A Leucine-rich repeat-con 99.3 1E-11 3.5E-16 131.1 9.8 148 184-333 64-217 (440)
45 1ziw_A TOLL-like receptor 3; i 99.3 2.5E-11 8.5E-16 135.3 13.4 195 275-483 381-593 (680)
46 2z63_A TOLL-like receptor 4, v 99.2 2.2E-11 7.6E-16 132.6 12.2 174 175-355 273-456 (570)
47 1xku_A Decorin; proteoglycan, 99.2 2.7E-11 9.4E-16 122.6 12.1 151 177-333 93-250 (330)
48 3zyi_A Leucine-rich repeat-con 99.2 1.8E-11 6.1E-16 129.8 10.7 190 154-354 75-276 (452)
49 1xku_A Decorin; proteoglycan, 99.2 2.1E-11 7.1E-16 123.5 10.8 123 184-308 52-179 (330)
50 1ogq_A PGIP-2, polygalacturona 99.2 6E-12 2.1E-16 126.7 6.4 219 123-354 50-278 (313)
51 2z66_A Variable lymphocyte rec 99.2 2.1E-11 7.3E-16 122.0 10.4 218 173-394 19-259 (306)
52 2z81_A CD282 antigen, TOLL-lik 99.2 4.6E-11 1.6E-15 129.6 13.3 250 183-452 195-505 (549)
53 3zyj_A Leucine-rich repeat-con 99.2 2E-11 6.7E-16 128.9 9.9 188 154-354 64-265 (440)
54 3zyi_A Leucine-rich repeat-con 99.2 1.2E-11 4.1E-16 131.0 8.3 199 173-376 66-277 (452)
55 1ziw_A TOLL-like receptor 3; i 99.2 4E-11 1.4E-15 133.6 12.3 156 174-333 17-181 (680)
56 1h6u_A Internalin H; cell adhe 99.2 4.1E-11 1.4E-15 120.3 11.0 184 154-354 41-227 (308)
57 1h6u_A Internalin H; cell adhe 99.2 5.7E-11 2E-15 119.2 12.1 185 182-377 39-229 (308)
58 3g06_A SSPH2 (leucine-rich rep 99.2 8.6E-11 2.9E-15 128.9 14.4 233 154-425 61-295 (622)
59 3o53_A Protein LRIM1, AGAP0063 99.2 1.2E-11 4.1E-16 124.7 6.9 164 154-333 34-201 (317)
60 1ozn_A Reticulon 4 receptor; N 99.2 1.4E-11 4.8E-16 122.0 6.9 190 184-376 32-236 (285)
61 2ca6_A RAN GTPase-activating p 99.2 1.5E-11 5.2E-16 127.4 6.7 59 275-333 159-226 (386)
62 1ozn_A Reticulon 4 receptor; N 99.2 3.5E-11 1.2E-15 119.2 8.7 191 154-354 32-235 (285)
63 3oja_A Leucine-rich immune mol 99.2 2.3E-11 8E-16 130.1 7.9 102 179-287 53-156 (487)
64 1jl5_A Outer protein YOPM; leu 99.2 1.7E-10 5.8E-15 122.2 14.4 178 184-376 131-308 (454)
65 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 1.7E-10 6E-15 125.6 14.3 140 297-452 350-505 (562)
66 2ft3_A Biglycan; proteoglycan, 99.2 5.9E-11 2E-15 120.3 9.6 153 174-333 46-203 (332)
67 2ft3_A Biglycan; proteoglycan, 99.2 8.2E-11 2.8E-15 119.2 10.3 16 409-424 315-330 (332)
68 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 2.3E-10 8E-15 124.6 14.5 121 154-287 52-181 (562)
69 3o53_A Protein LRIM1, AGAP0063 99.1 5E-11 1.7E-15 120.1 7.4 227 182-425 32-273 (317)
70 2z66_A Variable lymphocyte rec 99.1 3.3E-11 1.1E-15 120.6 5.3 214 154-377 28-260 (306)
71 4glp_A Monocyte differentiatio 99.1 8.4E-11 2.9E-15 118.0 8.2 174 123-308 64-259 (310)
72 3oja_A Leucine-rich immune mol 99.1 5.8E-11 2E-15 127.0 7.4 224 183-422 33-270 (487)
73 2o6q_A Variable lymphocyte rec 99.1 1.3E-10 4.6E-15 114.1 9.3 156 174-333 29-191 (270)
74 2z80_A TOLL-like receptor 2, v 99.1 6.2E-11 2.1E-15 121.2 6.8 151 181-333 121-287 (353)
75 1jl5_A Outer protein YOPM; leu 99.1 4.1E-10 1.4E-14 119.3 12.8 246 154-437 131-381 (454)
76 2ca6_A RAN GTPase-activating p 99.1 4.9E-11 1.7E-15 123.6 5.0 178 178-355 54-285 (386)
77 3rfs_A Internalin B, repeat mo 99.1 3.5E-10 1.2E-14 111.3 10.6 171 153-333 40-215 (272)
78 2xwt_C Thyrotropin receptor; s 99.1 1.2E-10 4E-15 112.2 7.1 78 185-263 32-115 (239)
79 2z62_A TOLL-like receptor 4, v 99.1 8.6E-11 3E-15 115.7 6.1 190 184-377 28-236 (276)
80 2z62_A TOLL-like receptor 4, v 99.1 1.7E-10 5.7E-15 113.7 8.1 189 154-352 28-232 (276)
81 3rfs_A Internalin B, repeat mo 99.1 1.6E-10 5.5E-15 113.7 7.6 169 182-354 39-215 (272)
82 1h6t_A Internalin B; cell adhe 99.1 3.7E-10 1.3E-14 112.3 10.1 163 154-333 46-210 (291)
83 1wwl_A Monocyte differentiatio 99.1 1.4E-10 4.8E-15 116.5 6.7 150 152-308 93-261 (312)
84 1h6t_A Internalin B; cell adhe 99.0 5.7E-10 1.9E-14 111.0 10.3 163 182-354 44-210 (291)
85 2o6q_A Variable lymphocyte rec 99.0 3.3E-10 1.1E-14 111.3 8.2 171 154-333 37-215 (270)
86 1m9s_A Internalin B; cell inva 99.0 4.9E-10 1.7E-14 122.6 8.6 165 153-334 42-208 (605)
87 1p9a_G Platelet glycoprotein I 99.0 8.4E-10 2.9E-14 109.7 8.8 100 184-287 31-136 (290)
88 1m9s_A Internalin B; cell inva 99.0 1E-09 3.4E-14 120.2 10.0 164 182-355 41-208 (605)
89 4ezg_A Putative uncharacterize 99.0 1.2E-09 4.2E-14 101.8 9.3 101 154-263 44-146 (197)
90 2xwt_C Thyrotropin receptor; s 99.0 5.2E-10 1.8E-14 107.7 6.6 190 154-354 31-236 (239)
91 3m19_A Variable lymphocyte rec 99.0 5.9E-10 2E-14 108.2 6.6 156 173-332 26-188 (251)
92 1p9a_G Platelet glycoprotein I 99.0 2E-09 6.8E-14 107.0 10.5 170 180-354 6-182 (290)
93 4ezg_A Putative uncharacterize 98.9 2E-09 6.8E-14 100.4 9.1 123 154-287 66-193 (197)
94 3goz_A Leucine-rich repeat-con 98.9 6.5E-10 2.2E-14 114.1 5.7 113 175-287 13-150 (362)
95 4glp_A Monocyte differentiatio 98.9 1.9E-09 6.4E-14 108.1 7.5 125 183-308 90-232 (310)
96 3goz_A Leucine-rich repeat-con 98.9 1.2E-09 4.1E-14 112.1 6.1 174 180-355 46-264 (362)
97 1wwl_A Monocyte differentiatio 98.9 2.2E-09 7.4E-14 107.8 7.8 193 123-332 95-305 (312)
98 1xeu_A Internalin C; cellular 98.8 4.6E-09 1.6E-13 102.7 7.9 143 181-333 38-182 (263)
99 2o6s_A Variable lymphocyte rec 98.8 4E-09 1.4E-13 99.1 7.0 150 174-333 20-175 (208)
100 2ell_A Acidic leucine-rich nuc 98.8 4.3E-09 1.5E-13 95.3 5.5 127 184-334 24-158 (168)
101 3m19_A Variable lymphocyte rec 98.7 1.4E-08 4.8E-13 98.4 8.0 147 154-309 35-188 (251)
102 2ell_A Acidic leucine-rich nuc 98.7 2.1E-08 7.2E-13 90.7 7.9 128 154-287 24-159 (168)
103 2je0_A Acidic leucine-rich nuc 98.7 2E-08 6.7E-13 88.9 7.4 105 154-264 17-124 (149)
104 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 7.8E-09 2.7E-13 74.2 3.6 38 30-67 6-43 (53)
105 2je0_A Acidic leucine-rich nuc 98.7 4E-09 1.4E-13 93.4 2.1 101 184-287 17-125 (149)
106 3cvr_A Invasion plasmid antige 98.7 3.5E-08 1.2E-12 106.9 9.8 174 153-355 58-241 (571)
107 4ay9_X Follicle-stimulating ho 98.7 3E-08 1E-12 101.1 7.8 33 185-217 31-65 (350)
108 3e4g_A ATP synthase subunit S, 98.6 3.8E-08 1.3E-12 89.1 6.7 92 173-264 50-150 (176)
109 1xeu_A Internalin C; cellular 98.6 6.2E-08 2.1E-12 94.6 7.1 139 153-308 40-180 (263)
110 2v70_A SLIT-2, SLIT homolog 2 98.6 4.9E-08 1.7E-12 92.6 6.2 111 174-287 24-141 (220)
111 2o6s_A Variable lymphocyte rec 98.6 9.1E-08 3.1E-12 89.7 7.4 139 154-308 28-173 (208)
112 3cvr_A Invasion plasmid antige 98.5 2E-07 6.7E-12 101.0 10.6 131 184-333 59-190 (571)
113 2v9t_B SLIT homolog 2 protein 98.5 1.3E-07 4.5E-12 89.7 7.5 112 173-287 23-140 (220)
114 3e6j_A Variable lymphocyte rec 98.5 1.7E-07 5.8E-12 89.4 8.2 110 173-287 31-147 (229)
115 4ay9_X Follicle-stimulating ho 98.5 1.6E-07 5.3E-12 95.8 8.1 195 154-360 30-239 (350)
116 4g8a_A TOLL-like receptor 4; l 98.5 2.4E-07 8.2E-12 101.6 10.1 121 185-307 53-180 (635)
117 4g8a_A TOLL-like receptor 4; l 98.5 1.6E-07 5.5E-12 103.0 8.5 241 181-452 325-575 (635)
118 1a9n_A U2A', U2A'; complex (nu 98.5 1.1E-07 3.9E-12 86.6 6.1 104 180-287 15-125 (176)
119 2v70_A SLIT-2, SLIT homolog 2 98.5 1.7E-07 5.8E-12 88.9 7.1 144 187-333 14-163 (220)
120 1ds9_A Outer arm dynein; leuci 98.5 5.5E-09 1.9E-13 97.4 -3.8 113 173-287 37-152 (198)
121 1a9n_A U2A', U2A'; complex (nu 98.5 8.3E-08 2.8E-12 87.5 4.2 132 200-333 13-150 (176)
122 2v9t_B SLIT homolog 2 protein 98.5 2E-07 6.7E-12 88.4 6.8 126 154-287 32-164 (220)
123 2xot_A Amphoterin-induced prot 98.4 2.2E-07 7.4E-12 95.2 5.4 110 174-287 31-148 (361)
124 3e6j_A Variable lymphocyte rec 98.4 6.1E-07 2.1E-11 85.5 7.7 126 154-287 40-171 (229)
125 3e4g_A ATP synthase subunit S, 98.4 3.2E-07 1.1E-11 83.0 5.3 93 204-338 59-154 (176)
126 3un9_A NLR family member X1; l 98.3 9.3E-08 3.2E-12 98.3 1.5 36 206-241 101-136 (372)
127 2xot_A Amphoterin-induced prot 98.3 3.7E-07 1.3E-11 93.4 5.3 144 154-308 39-197 (361)
128 2ra8_A Uncharacterized protein 98.3 6.9E-06 2.4E-10 83.8 13.6 186 123-333 107-317 (362)
129 2ra8_A Uncharacterized protein 98.2 1.5E-06 5.1E-11 88.7 6.6 131 222-354 163-317 (362)
130 1w8a_A SLIT protein; signaling 98.2 1.4E-06 4.8E-11 80.5 5.7 112 173-287 20-138 (192)
131 1dce_A Protein (RAB geranylger 98.2 1.9E-06 6.4E-11 93.5 7.0 100 227-330 459-567 (567)
132 3sb4_A Hypothetical leucine ri 98.2 7.3E-06 2.5E-10 82.5 10.9 196 123-332 25-306 (329)
133 2o6r_A Variable lymphocyte rec 98.2 2.9E-06 9.8E-11 77.1 7.1 112 173-287 19-136 (177)
134 3sb4_A Hypothetical leucine ri 98.2 1.2E-06 4.2E-11 88.2 4.9 170 154-339 25-288 (329)
135 1ds9_A Outer arm dynein; leuci 98.1 1E-07 3.6E-12 88.6 -2.9 102 201-308 43-148 (198)
136 2wfh_A SLIT homolog 2 protein 98.1 4.8E-06 1.6E-10 77.0 7.1 111 174-287 23-138 (193)
137 3un9_A NLR family member X1; l 98.1 6.1E-07 2.1E-11 92.1 0.9 161 149-334 67-250 (372)
138 1dce_A Protein (RAB geranylger 98.1 5.1E-06 1.8E-10 90.1 8.0 100 186-287 443-545 (567)
139 1w8a_A SLIT protein; signaling 98.1 3.3E-06 1.1E-10 78.0 5.5 99 187-287 11-114 (192)
140 2wfh_A SLIT homolog 2 protein 98.0 1.1E-05 3.9E-10 74.4 7.7 97 187-287 13-114 (193)
141 2o6r_A Variable lymphocyte rec 97.9 1.9E-05 6.6E-10 71.6 7.0 101 185-287 8-112 (177)
142 4fdw_A Leucine rich hypothetic 97.8 4E-05 1.4E-09 79.3 8.6 137 185-331 158-308 (401)
143 4b8c_D Glucose-repressible alc 97.8 1.4E-05 4.8E-10 89.4 5.0 106 177-287 217-328 (727)
144 4b8c_D Glucose-repressible alc 97.8 1.3E-05 4.4E-10 89.7 4.4 142 154-309 173-325 (727)
145 3l2o_B F-box only protein 4; s 97.8 6.7E-06 2.3E-10 79.4 1.7 35 32-66 4-38 (312)
146 2e31_A FBS1, F-box only protei 97.7 1.2E-05 4.2E-10 78.5 3.5 36 31-66 49-85 (297)
147 3g39_A Variable lymphocyte rec 97.6 3.8E-05 1.3E-09 69.3 4.6 36 252-287 77-114 (170)
148 2r9u_A Variable lymphocyte rec 97.6 5.6E-05 1.9E-09 68.5 5.4 35 184-218 33-69 (174)
149 3g39_A Variable lymphocyte rec 97.5 0.00015 5.1E-09 65.3 6.2 88 174-264 22-113 (170)
150 4fdw_A Leucine rich hypothetic 97.5 0.00026 8.9E-09 73.2 8.8 146 180-332 176-332 (401)
151 1io0_A Tropomodulin; LRR prote 97.4 0.00016 5.4E-09 66.2 6.1 106 182-287 34-163 (185)
152 2r9u_A Variable lymphocyte rec 97.4 0.0002 7E-09 64.7 6.3 98 186-287 14-117 (174)
153 3v7d_B Cell division control p 97.4 4.4E-05 1.5E-09 79.9 2.0 39 29-67 11-49 (464)
154 1io0_A Tropomodulin; LRR prote 97.3 0.00048 1.7E-08 62.9 7.6 109 202-333 32-161 (185)
155 4fs7_A Uncharacterized protein 97.2 0.00096 3.3E-08 68.6 9.3 53 182-239 69-125 (394)
156 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.00022 7.5E-09 74.3 4.0 38 29-66 15-52 (445)
157 1p22_A F-BOX/WD-repeat protein 97.1 0.00014 4.8E-09 75.6 1.7 38 29-66 7-48 (435)
158 2ifg_A High affinity nerve gro 96.8 0.001 3.5E-08 67.0 5.2 69 173-243 21-92 (347)
159 2ifg_A High affinity nerve gro 96.5 0.0023 8E-08 64.3 5.4 98 187-287 11-115 (347)
160 3rw6_A Nuclear RNA export fact 95.9 0.003 1E-07 61.1 2.6 39 204-242 168-207 (267)
161 4fs7_A Uncharacterized protein 95.9 0.014 4.9E-07 59.7 8.0 145 181-332 227-375 (394)
162 3rw6_A Nuclear RNA export fact 95.7 0.0071 2.4E-07 58.4 4.4 107 204-310 139-261 (267)
163 4gt6_A Cell surface protein; l 95.1 0.019 6.6E-07 58.7 5.4 98 251-352 263-365 (394)
164 4gt6_A Cell surface protein; l 94.2 0.053 1.8E-06 55.4 6.2 125 200-332 259-387 (394)
165 1pgv_A TMD-1, tropomodulin TMD 93.3 0.036 1.2E-06 50.7 2.5 101 140-241 25-136 (197)
166 4h09_A Hypothetical leucine ri 92.7 0.074 2.5E-06 53.8 4.2 14 318-331 305-318 (379)
167 1pgv_A TMD-1, tropomodulin TMD 92.6 0.18 6.1E-06 46.1 6.1 106 181-286 38-168 (197)
168 4h09_A Hypothetical leucine ri 92.5 0.15 5E-06 51.6 6.1 144 182-331 192-341 (379)
169 3rfe_A Platelet glycoprotein I 74.3 2.3 8E-05 35.6 3.6 35 184-218 31-67 (130)
170 3rfe_A Platelet glycoprotein I 29.5 39 0.0013 27.8 3.4 34 254-287 32-67 (130)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=1.6e-24 Score=238.31 Aligned_cols=299 Identities=18% Similarity=0.213 Sum_probs=160.7
Q ss_pred CCCchHHHHHHHcCC-ChHHHHHHhhcchhhhhhhccCC-eEEEcCCCccc-----------cc--cccCCch-hhh--h
Q 008452 34 SDLPTFIIHHIMSFL-PAKEAARASILSKRWEKFHSSFP-ILDFDQHNFGC-----------LA--DASGHTL-NAL--R 95 (565)
Q Consensus 34 s~LPd~vL~~ILs~L-~~~d~vr~s~lSkrWr~lw~~~~-~l~f~~~~~~~-----------~~--~~~~~~~-~~~--~ 95 (565)
++|||||+.+||+|| +.+|+++++.|||||++++.... .+.+.. .+.. +. +..+.+. .+. .
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 92 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI 92 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCS
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccc
Confidence 389999999999999 89999999999999998753322 122111 1000 00 0000000 000 0
Q ss_pred hhhhhhHhHHHH-HHHHHHHHhccccCCCCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCccccc
Q 008452 96 ENREFRTCLARF-IDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTY 174 (565)
Q Consensus 96 ~~~~~~~~~~~f-~~~v~~~L~~~~~~~~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~ 174 (565)
... . ..+ ...+..+. .....++.+.+.... .......|+......++++|++..+.. ....
T Consensus 93 ~~~-~----~~~~~~~l~~l~----~~~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~L~~~~~----~~~~ 154 (592)
T 3ogk_B 93 PEN-W----GGYVTPWVTEIS----NNLRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLKLDKCSG----FTTD 154 (592)
T ss_dssp CTT-S----CCBCHHHHHHHH----HHCTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEEEESCEE----EEHH
T ss_pred ccc-c----cccchHHHHHHH----hhCCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEECcCCCC----cCHH
Confidence 000 0 000 01111111 123567888777653 234445566554444688888876321 1222
Q ss_pred ccCcccccCCCccEEEecCccCCCC------CcccCCCcCcEEEcCCeeec---hHHHHHHHhcCcCCceeEeeecCCCc
Q 008452 175 TLPQTVFSANFLTHLRLAGCKLEQP------CYAMCFLSLKKLHLYGVYIT---EQMVQKLLHECHFLEDLNFFECLGLK 245 (565)
Q Consensus 175 ~lp~~l~~~~~L~~L~L~~c~l~~~------~~~~~l~~Lk~L~L~~~~~~---~~~l~~ll~~cp~Le~L~L~~c~~l~ 245 (565)
.++.....|++|++|+|++|.+.+. .....+++|++|+|+++.++ ...+..++.+||+|++|++.+|....
T Consensus 155 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 3444445688999999999876541 12346889999999888774 56788888889999999998875422
Q ss_pred cc-ccccCcccceeEccccccc----ccchhh-cCccccEeeecCCCCCCCCceeeccccccccccccc--ccchHHHHH
Q 008452 246 LL-CISGAHKLKILTMETLSSE----LKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF--NLLGQEFCT 317 (565)
Q Consensus 246 ~l-~i~~~~~L~~L~l~~c~~~----l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~--~i~~~~l~~ 317 (565)
.. .+..+++|+.|.+..+... .....+ .+++|+.|.+++.. ....+..+..+++|+.|++. .+++..+..
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 312 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKLDLLYALLETEDHCT 312 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence 10 1223566666666543200 000111 34555555555532 23333444555555555544 234444445
Q ss_pred HhcCCCCcceeecccccc---cccccccCCcccEEeecC
Q 008452 318 LISKFPLLEDLSLFACSS---FERITISSNQLKHLSLVH 353 (565)
Q Consensus 318 l~~~~~~L~~L~L~~C~~---~~~l~~~~~~L~~L~L~~ 353 (565)
++..+++|+.|++.++.. +..+...+++|+.|++.+
T Consensus 313 ~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 555556666665553311 111222345555555553
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=5.8e-24 Score=233.80 Aligned_cols=218 Identities=15% Similarity=0.190 Sum_probs=112.5
Q ss_pred CCCcCCCCchHHHHHHHcCCC-hHHHHHHhhcchhhhhhhc-cCCeEEEcCCCccc----------cc--cccCCc-hhh
Q 008452 29 TMDRISDLPTFIIHHIMSFLP-AKEAARASILSKRWEKFHS-SFPILDFDQHNFGC----------LA--DASGHT-LNA 93 (565)
Q Consensus 29 ~~D~is~LPd~vL~~ILs~L~-~~d~vr~s~lSkrWr~lw~-~~~~l~f~~~~~~~----------~~--~~~~~~-~~~ 93 (565)
..|+++.|||||+.+||+||+ .+|+++++.|||||+++.. ....+.+....... +. +..+.. ..+
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 358999999999999999999 9999999999999998721 12223332211000 00 000000 000
Q ss_pred hhhh-hhhhHhHHHHHHHHHHHHhccccCCCCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCccc
Q 008452 94 LREN-REFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVH 172 (565)
Q Consensus 94 ~~~~-~~~~~~~~~f~~~v~~~L~~~~~~~~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~ 172 (565)
+.-. .... ..+...+..+. .....++.+.+.... .....+.. +.. ..+++++|++..+.. ..
T Consensus 82 ~~l~~~~~~---~~~~~~l~~l~----~~~~~L~~L~L~~~~----~~~~~~~~-l~~-~~~~L~~L~L~~~~~----~~ 144 (594)
T 2p1m_B 82 FNLVPDGWG---GYVYPWIEAMS----SSYTWLEEIRLKRMV----VTDDCLEL-IAK-SFKNFKVLVLSSCEG----FS 144 (594)
T ss_dssp GTCSCTTSC---CBCHHHHHHHH----HHCTTCCEEEEESCB----CCHHHHHH-HHH-HCTTCCEEEEESCEE----EE
T ss_pred ccccccccc---chhhHHHHHHH----HhCCCCCeEEeeCcE----EcHHHHHH-HHH-hCCCCcEEeCCCcCC----CC
Confidence 0000 0000 00001111111 123456776666553 11222211 111 135777777765311 11
Q ss_pred ccccCcccccCCCccEEEecCccCCC------CCcccCCCcCcEEEcCCee--echHHHHHHHhcCcCCceeEeeecCCC
Q 008452 173 TYTLPQTVFSANFLTHLRLAGCKLEQ------PCYAMCFLSLKKLHLYGVY--ITEQMVQKLLHECHFLEDLNFFECLGL 244 (565)
Q Consensus 173 ~~~lp~~l~~~~~L~~L~L~~c~l~~------~~~~~~l~~Lk~L~L~~~~--~~~~~l~~ll~~cp~Le~L~L~~c~~l 244 (565)
...++.....|++|++|+|++|.+.. ......+++|++|+|+++. +++..+..++..||+|+.|+|.+|..+
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 22244444467888888888887554 1122367788888888886 466778888788888888888888554
Q ss_pred cccc--cccCcccceeEcccc
Q 008452 245 KLLC--ISGAHKLKILTMETL 263 (565)
Q Consensus 245 ~~l~--i~~~~~L~~L~l~~c 263 (565)
+.+. +..+++|+.|.+..|
T Consensus 225 ~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 225 EKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHHHHHCTTCSEEECSBC
T ss_pred HHHHHHHhcCCcceEcccccc
Confidence 3321 223567777765544
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1e-21 Score=200.18 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=34.8
Q ss_pred CcCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhh
Q 008452 31 DRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFH 67 (565)
Q Consensus 31 D~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw 67 (565)
..+++|||||+.+||+||+.+|+++++.|||+|+++.
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~ 43 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHH
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999999999999999999999985
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.59 E-value=1.7e-14 Score=147.34 Aligned_cols=249 Identities=14% Similarity=0.081 Sum_probs=119.2
Q ss_pred cccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeE
Q 008452 180 VFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILT 259 (565)
Q Consensus 180 l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~ 259 (565)
+..+++|++|++++|.+...+.+..+++|++|+|+++.+++- . .+..+++|++|++++|.....-.+..+++|+.|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~ 138 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLN 138 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEECcCCcccCchhhccCCceeEEE
Confidence 445566666666666665522255666666666666655221 1 2455666666666666542222244456666666
Q ss_pred cccccccccch-hh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccc
Q 008452 260 METLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFE 337 (565)
Q Consensus 260 l~~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~ 337 (565)
+++|. ....+ .+ .+++|++|+++++.+.... .++.+++|+.|++.+..-..+.. +..+++|+.|++.+|....
T Consensus 139 l~~n~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 139 LGANH-NLSDLSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp CTTCT-TCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred CCCCC-CcccccchhhCCCCcEEEecCCCcCCch---hhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCC
Confidence 66664 11111 12 5566666666666542111 15555666655554321111111 4555666666666552211
Q ss_pred cc-cccCCcccEEeecCCcChhhcc--ccCCCccceeEecCCC-C---ceecccccceeeecccccCCCCcccchHHHHH
Q 008452 338 RI-TISSNQLKHLSLVHCASLKAIN--IDAPNLLSCNFWYNPF-P---IISINSQCSWNIHFNCQDDHDGGWFLNFKDFL 410 (565)
Q Consensus 338 ~l-~~~~~~L~~L~L~~C~~L~~L~--i~~p~L~~~~~~g~~~-~---~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l 410 (565)
.. ...+++|+.|++++|. +..+. -..++|+.+.++++.. . +....+|+.+++..+.. .+ + ..+
T Consensus 214 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l----~~----~-~~~ 283 (347)
T 4fmz_A 214 ITPVANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI----SD----I-SVL 283 (347)
T ss_dssp CGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC----CC----C-GGG
T ss_pred CchhhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCcc----CC----C-hhh
Confidence 11 1233556666655553 11111 1234555555555433 1 11223555555544211 11 1 135
Q ss_pred hhCCCCceEEEEEecccccccccccccccCCCCCccceeEEE
Q 008452 411 RISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLR 452 (565)
Q Consensus 411 ~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~ 452 (565)
..+++|++|.++.+.... ..+..|.. .++++.|.+.
T Consensus 284 ~~l~~L~~L~L~~n~l~~-~~~~~l~~-----l~~L~~L~L~ 319 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGN-EDMEVIGG-----LTNLTTLFLS 319 (347)
T ss_dssp GGCTTCSEEECCSSCCCG-GGHHHHHT-----CTTCSEEECC
T ss_pred cCCCCCCEEECcCCcCCC-cChhHhhc-----cccCCEEEcc
Confidence 566677777776665321 22333444 2346666654
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.59 E-value=1.4e-14 Score=148.02 Aligned_cols=250 Identities=17% Similarity=0.106 Sum_probs=173.0
Q ss_pred hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452 153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF 232 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~ 232 (565)
.+++++|++... ....+|. +..+++|++|+|++|.+...+.+..+++|++|+|+++.+.+- .. +..+++
T Consensus 65 ~~~L~~L~l~~n-------~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~--~~-~~~l~~ 133 (347)
T 4fmz_A 65 LTNLEYLNLNGN-------QITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI--SP-LANLTK 133 (347)
T ss_dssp CTTCCEEECCSS-------CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC--GG-GTTCTT
T ss_pred cCCccEEEccCC-------ccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc--hh-hccCCc
Confidence 468999988763 2233444 667889999999999888766688899999999999988322 11 678999
Q ss_pred CceeEeeecCCCccc-ccccCcccceeEcccccccccch-hh-cCccccEeeecCCCCCCCCceeecccccccccccccc
Q 008452 233 LEDLNFFECLGLKLL-CISGAHKLKILTMETLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFN 309 (565)
Q Consensus 233 Le~L~L~~c~~l~~l-~i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~ 309 (565)
|+.|++.+|.....+ .+..+++|+.|++++|. +..+ .+ .+++|++|++++|.+.... .+..+++|+.|++.+
T Consensus 134 L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK--VKDVTPIANLTDLYSLSLNYNQIEDIS---PLASLTSLHYFTAYV 208 (347)
T ss_dssp CCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC--CCCCGGGGGCTTCSEEECTTSCCCCCG---GGGGCTTCCEEECCS
T ss_pred eeEEECCCCCCcccccchhhCCCCcEEEecCCC--cCCchhhccCCCCCEEEccCCcccccc---cccCCCccceeeccc
Confidence 999999999765543 24557899999999885 2222 13 7889999999998863222 277788888777764
Q ss_pred cchHHHHHHhcCCCCcceeecccccccccc-cccCCcccEEeecCCcChhhcc--ccCCCccceeEecCCCC----ceec
Q 008452 310 LLGQEFCTLISKFPLLEDLSLFACSSFERI-TISSNQLKHLSLVHCASLKAIN--IDAPNLLSCNFWYNPFP----IISI 382 (565)
Q Consensus 310 i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l-~~~~~~L~~L~L~~C~~L~~L~--i~~p~L~~~~~~g~~~~----~~~~ 382 (565)
.....+.. +..+++|+.|++++|...... ...+++|+.|++++|. +..+. -..++|+.+.++++... +...
T Consensus 209 n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l 286 (347)
T 4fmz_A 209 NQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQISDISVLNNL 286 (347)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred CCCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCccCCChhhcCC
Confidence 32211111 678899999999987432211 2345789999988873 33322 24467888888887651 2223
Q ss_pred ccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEeccc
Q 008452 383 NSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQ 427 (565)
Q Consensus 383 ~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~ 427 (565)
.+|+.+++..+... ......+.++++|++|.++.+...
T Consensus 287 ~~L~~L~L~~n~l~-------~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 287 SQLNSLFLNNNQLG-------NEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp TTCSEEECCSSCCC-------GGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CCCCEEECcCCcCC-------CcChhHhhccccCCEEEccCCccc
Confidence 57888888653211 123457888999999999988854
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.55 E-value=1.9e-14 Score=146.18 Aligned_cols=199 Identities=20% Similarity=0.264 Sum_probs=147.1
Q ss_pred HHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHH
Q 008452 149 ALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLL 227 (565)
Q Consensus 149 ~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll 227 (565)
......++++|++.. .....+|..++.+++|++|+|++|.+.. +..+..+++|++|+|++|.+. .+...+
T Consensus 76 ~~~~~~~l~~L~L~~-------n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l 146 (328)
T 4fcg_A 76 EDATQPGRVALELRS-------VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASI 146 (328)
T ss_dssp HHHTSTTCCEEEEES-------SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGG
T ss_pred hcccccceeEEEccC-------CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHH
Confidence 334456889999887 2344788889999999999999998887 677889999999999999884 344457
Q ss_pred hcCcCCceeEeeecCCCccccc-----------ccCcccceeEcccccccccch--hh-cCccccEeeecCCCCCCCCce
Q 008452 228 HECHFLEDLNFFECLGLKLLCI-----------SGAHKLKILTMETLSSELKGV--KI-VASSLQQLTLQFPFEGQGTPV 293 (565)
Q Consensus 228 ~~cp~Le~L~L~~c~~l~~l~i-----------~~~~~L~~L~l~~c~~~l~~i--~~-~~p~L~~L~l~~~~~~~~~~~ 293 (565)
..+++|++|+|++|...+.+.. ..+++|+.|++++|. +..+ .+ .+++|++|++++|.+. ..+
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~N~l~--~l~ 222 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG--IRSLPASIANLQNLKSLKIRNSPLS--ALG 222 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC--CCCCCGGGGGCTTCCEEEEESSCCC--CCC
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC--cCcchHhhcCCCCCCEEEccCCCCC--cCc
Confidence 8899999999999987655421 237899999999884 3333 23 6889999999998873 234
Q ss_pred eeccccccccccccccc-chHHHHHHhcCCCCcceeecccccccccccc---cCCcccEEeecCCcChhhc
Q 008452 294 VDIAVCPNLKKFRAFNL-LGQEFCTLISKFPLLEDLSLFACSSFERITI---SSNQLKHLSLVHCASLKAI 360 (565)
Q Consensus 294 ~~l~~~~~L~~L~~~~i-~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~---~~~~L~~L~L~~C~~L~~L 360 (565)
..++.+++|+.|++.+. ....++..+.++++|+.|+|++|...+.++. .+++|+.|+|++|..+..+
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 45778888888887642 2233445567788888888888876666653 3467777888877655444
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=155.34 Aligned_cols=239 Identities=18% Similarity=0.081 Sum_probs=123.5
Q ss_pred cccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCc
Q 008452 178 QTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAH 253 (565)
Q Consensus 178 ~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~ 253 (565)
..+..+++|++|+|++|.+.. +..+.++++|++|+|+++.++.- ....+.++++|++|+|++|..... -.+..++
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 345556677777777766655 44566677777777776665211 112245567777777776654221 1234466
Q ss_pred ccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchH-HHHHHhcCCCCcceeec
Q 008452 254 KLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQ-EFCTLISKFPLLEDLSL 330 (565)
Q Consensus 254 ~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~-~l~~l~~~~~~L~~L~L 330 (565)
+|+.|+++++. ..+..-.+ .+++|++|++++|.+ .......++.+++|+.|++.+.... .....+..+++|+.|++
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 77777776663 11111123 566777777776665 2222334556666666655432111 11123456667777777
Q ss_pred cccccccccccc---CCcccEEeecCCcChhhcc----ccCCCccceeEecCCCC------ceecccccceeeecccccC
Q 008452 331 FACSSFERITIS---SNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNPFP------IISINSQCSWNIHFNCQDD 397 (565)
Q Consensus 331 ~~C~~~~~l~~~---~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~~~------~~~~~sL~~~~l~~~~~~~ 397 (565)
++|..++.+... ..+|+.|++++|. ++.+. -..++|+.+.++++... +....+|+.+++..+...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (477)
T 2id5_A 208 SHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286 (477)
T ss_dssp ECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred CCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence 766555544322 2356666666652 32222 12355666666555431 1112355556554422111
Q ss_pred CCCcccchHHHHHhhCCCCceEEEEEecc
Q 008452 398 HDGGWFLNFKDFLRISKKIEELSIDFLSN 426 (565)
Q Consensus 398 ~~~~~l~~l~~~l~~l~~Le~L~i~~~~~ 426 (565)
..+ ..+.++++|++|+++.+..
T Consensus 287 ~~~-------~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 287 VEP-------YAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp ECT-------TTBTTCTTCCEEECCSSCC
T ss_pred ECH-------HHhcCcccCCEEECCCCcC
Confidence 111 1345566666666666553
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.51 E-value=4.6e-14 Score=159.74 Aligned_cols=170 Identities=14% Similarity=0.051 Sum_probs=114.9
Q ss_pred hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452 153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH 231 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp 231 (565)
.+++++|++.... .....| ...+++|++|+|++|.+.. .+.+..+++|++|+|++|.+++. +...+..++
T Consensus 177 l~~L~~L~Ls~n~------l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~ 247 (768)
T 3rgz_A 177 CGELKHLAISGNK------ISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCT 247 (768)
T ss_dssp CTTCCEEECCSSE------EESCCB--CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCS
T ss_pred CCCCCEEECCCCc------ccccCC--cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCC
Confidence 3577777776521 111112 2578899999999998877 45588999999999999988433 445678899
Q ss_pred CCceeEeeecCCCcccccccCcccceeEccccccccc-ch--hh--cCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452 232 FLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELK-GV--KI--VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR 306 (565)
Q Consensus 232 ~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~-~i--~~--~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 306 (565)
+|++|++++|...+.+....+++|++|++++|. +. .+ .+ .+++|++|++++|.+ ....+..++.+++|+.|+
T Consensus 248 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~--l~~~ip~~~~~~~~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~ 324 (768)
T 3rgz_A 248 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK--FTGEIPDFLSGACDTLTGLDLSGNHF-YGAVPPFFGSCSLLESLA 324 (768)
T ss_dssp SCCEEECCSSCCEESCCCCCCTTCCEEECCSSE--EEESCCCCSCTTCTTCSEEECCSSEE-EECCCGGGGGCTTCCEEE
T ss_pred CCCEEECCCCcccCccCccccCCCCEEECcCCc--cCCccCHHHHhhcCcCCEEECcCCcC-CCccchHHhcCCCccEEE
Confidence 999999999976544333357888888888875 21 11 11 348888888888875 334555677778888777
Q ss_pred ccccch--HHHHHHhcCCCCcceeeccccc
Q 008452 307 AFNLLG--QEFCTLISKFPLLEDLSLFACS 334 (565)
Q Consensus 307 ~~~i~~--~~l~~l~~~~~~L~~L~L~~C~ 334 (565)
+.+..- ..-...+.++++|+.|++++|.
T Consensus 325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp CCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred CCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 663321 2222335667777777777764
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.50 E-value=3.3e-13 Score=143.67 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=26.8
Q ss_pred cccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecC
Q 008452 180 VFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECL 242 (565)
Q Consensus 180 l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 242 (565)
+..+++|++|.+++|.+...+.+..+++|++|+|+++.+.+-. . +..+++|++|++++|.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~l~~n~ 145 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLELSSNT 145 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEEEEEEE
T ss_pred hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEECCCCc
Confidence 3444455555555554444111444555555555555441110 0 3445555555555443
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=1.1e-13 Score=157.21 Aligned_cols=279 Identities=10% Similarity=0.035 Sum_probs=182.4
Q ss_pred hCCcEEEEEEeCCCCc-Cccc-c---------cccCcccc--cCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCee
Q 008452 153 ENGVKELDFQILPDIK-DYVH-T---------YTLPQTVF--SANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVY 217 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~-~~~~-~---------~~lp~~l~--~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~ 217 (565)
.+++++|+|+...-.. +.+. . ..+|..+. .+++|++|+|++|.+.. |..+..+++|+.|+|++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 4689999998732110 0000 0 02888887 89999999999998776 7778999999999999998
Q ss_pred -echHHHHHHH-------hcCcCCceeEeeecCCCccc----ccccCcccceeEcccccccccch-hh-cCccccEeeec
Q 008452 218 -ITEQMVQKLL-------HECHFLEDLNFFECLGLKLL----CISGAHKLKILTMETLSSELKGV-KI-VASSLQQLTLQ 283 (565)
Q Consensus 218 -~~~~~l~~ll-------~~cp~Le~L~L~~c~~l~~l----~i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~L~~L~l~ 283 (565)
++...+..-+ ..+|+|+.|+|++|... .+ .+..+++|+.|++++|. +..+ .+ .+++|+.|+++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~--l~~lp~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK--VRHLEAFGTNVKLTDLKLD 603 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC--CCBCCCCCTTSEESEEECC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC--cccchhhcCCCcceEEECc
Confidence 6542233323 35669999999999764 33 34568999999999985 3333 34 68999999999
Q ss_pred CCCCCCCCceeecccccc-cccccccccchHHHHHHhcCCC--Ccceeeccccccccccc--------ccCCcccEEeec
Q 008452 284 FPFEGQGTPVVDIAVCPN-LKKFRAFNLLGQEFCTLISKFP--LLEDLSLFACSSFERIT--------ISSNQLKHLSLV 352 (565)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~-L~~L~~~~i~~~~l~~l~~~~~--~L~~L~L~~C~~~~~l~--------~~~~~L~~L~L~ 352 (565)
+|.+. ..+..+..+++ |+.|++.+..-..++..+...+ +|+.|+|++|...+.++ ....+|+.|+++
T Consensus 604 ~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 604 YNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp SSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred CCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence 99873 55556888888 9988887543334455555444 49999999875433222 123478888888
Q ss_pred CCcChhhccc----cCCCccceeEecCCC---Cceecc----------cccceeeecccccCCCCcccchHHHHHh--hC
Q 008452 353 HCASLKAINI----DAPNLLSCNFWYNPF---PIISIN----------SQCSWNIHFNCQDDHDGGWFLNFKDFLR--IS 413 (565)
Q Consensus 353 ~C~~L~~L~i----~~p~L~~~~~~g~~~---~~~~~~----------sL~~~~l~~~~~~~~~~~~l~~l~~~l~--~l 413 (565)
++. +..+.. ..++|+.+.++++.. +...+. +|+.+++..|... . +...+. ++
T Consensus 682 ~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~-------lp~~l~~~~l 752 (876)
T 4ecn_A 682 YNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-S-------LSDDFRATTL 752 (876)
T ss_dssp SSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-C-------CCGGGSTTTC
T ss_pred CCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-c-------chHHhhhccC
Confidence 763 323321 346777777776654 111111 5777777654322 1 112333 67
Q ss_pred CCCceEEEEEecccccccccccccccCCCCCccceeEEE
Q 008452 414 KKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLR 452 (565)
Q Consensus 414 ~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~ 452 (565)
++|+.|+++.+.... +|..+.. .++|+.|.|.
T Consensus 753 ~~L~~L~Ls~N~L~~--lp~~l~~-----L~~L~~L~Ls 784 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSS--FPTQPLN-----SSQLKAFGIR 784 (876)
T ss_dssp TTCCEEECCSSCCSS--CCCGGGG-----CTTCCEEECC
T ss_pred CCcCEEEeCCCCCCc--cchhhhc-----CCCCCEEECC
Confidence 788888887776552 4555554 2346666653
No 11
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=2.9e-13 Score=148.34 Aligned_cols=171 Identities=17% Similarity=0.205 Sum_probs=85.3
Q ss_pred cCCCccEEEecCc-cCCC---CCcccCCCcCcEEEcCCeeech---HHHHHHHhcCcCCceeEeeecC-CCcccc----c
Q 008452 182 SANFLTHLRLAGC-KLEQ---PCYAMCFLSLKKLHLYGVYITE---QMVQKLLHECHFLEDLNFFECL-GLKLLC----I 249 (565)
Q Consensus 182 ~~~~L~~L~L~~c-~l~~---~~~~~~l~~Lk~L~L~~~~~~~---~~l~~ll~~cp~Le~L~L~~c~-~l~~l~----i 249 (565)
.+++|++|+|++| .+.. +.....+++|++|+|++|.+++ ..+..+...|++|++|++.+|. .+..-. +
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 3556666666665 3322 1222345666666666655522 2233334455666666666554 111100 1
Q ss_pred ccCcccceeEccccc--ccccchhhcCccccEeeecCCCC-----------------------------CCCCceeeccc
Q 008452 250 SGAHKLKILTMETLS--SELKGVKIVASSLQQLTLQFPFE-----------------------------GQGTPVVDIAV 298 (565)
Q Consensus 250 ~~~~~L~~L~l~~c~--~~l~~i~~~~p~L~~L~l~~~~~-----------------------------~~~~~~~~l~~ 298 (565)
..+++|++|++++|. .++..+...+++|++|.+.++.. .....+..+..
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 124666666666663 11222222455555555433310 00001111224
Q ss_pred cccccccccc--ccchHHHHHHhcCCCCcceeecccccc---cccccccCCcccEEeec
Q 008452 299 CPNLKKFRAF--NLLGQEFCTLISKFPLLEDLSLFACSS---FERITISSNQLKHLSLV 352 (565)
Q Consensus 299 ~~~L~~L~~~--~i~~~~l~~l~~~~~~L~~L~L~~C~~---~~~l~~~~~~L~~L~L~ 352 (565)
+++|+.|++. .+++..+..++.++++|+.|++.+|.. +..+...+++|+.|++.
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence 5677766665 355666777777888888888887722 22222346778888773
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.48 E-value=1.3e-13 Score=152.76 Aligned_cols=271 Identities=9% Similarity=0.025 Sum_probs=180.1
Q ss_pred hCCcEEEEEEeCCCCcCcccccc------------------cCcccc--cCCCccEEEecCccCCC--CCcccCCCcCcE
Q 008452 153 ENGVKELDFQILPDIKDYVHTYT------------------LPQTVF--SANFLTHLRLAGCKLEQ--PCYAMCFLSLKK 210 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~~~~~~~~------------------lp~~l~--~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~ 210 (565)
.+++++|+|.... ... +|..+. .+++|++|+|++|.+.. |..+..+++|++
T Consensus 205 l~~L~~L~Ls~n~-------l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 205 LTKLRQFYMGNSP-------FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp CTTCCEEEEESCC-------CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred ccCCCEEECcCCc-------cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 4689999998732 222 899998 99999999999998776 778899999999
Q ss_pred EEcCCee-echHHHHHHHh------cCcCCceeEeeecCCCccc----ccccCcccceeEccccccccc-ch-hh-cCcc
Q 008452 211 LHLYGVY-ITEQMVQKLLH------ECHFLEDLNFFECLGLKLL----CISGAHKLKILTMETLSSELK-GV-KI-VASS 276 (565)
Q Consensus 211 L~L~~~~-~~~~~l~~ll~------~cp~Le~L~L~~c~~l~~l----~i~~~~~L~~L~l~~c~~~l~-~i-~~-~~p~ 276 (565)
|+|++|. ++...+..-+. .+++|++|++.+|... .+ .+..+++|+.|++++|. +. .+ .+ .+++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~--l~g~ip~~~~l~~ 354 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ--LEGKLPAFGSEIK 354 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC--CEEECCCCEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc--CccchhhhCCCCC
Confidence 9999998 66523333333 4599999999999764 33 35568899999999985 22 22 44 6789
Q ss_pred ccEeeecCCCCCCCCceeecccccc-cccccccccchHHHHHHhcCC--CCcceeecccccccccccc----------cC
Q 008452 277 LQQLTLQFPFEGQGTPVVDIAVCPN-LKKFRAFNLLGQEFCTLISKF--PLLEDLSLFACSSFERITI----------SS 343 (565)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~~~~i~~~~l~~l~~~~--~~L~~L~L~~C~~~~~l~~----------~~ 343 (565)
|++|++++|.+. ..+..++.+++ |+.|++++..-..++..+... ++|+.|++++|...+.++. ..
T Consensus 355 L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 355 LASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp ESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 999999998862 44456778888 998887743333444444443 3899999988754433322 23
Q ss_pred CcccEEeecCCcChhhccc----cCCCccceeEecCCCC---ceecc----------cccceeeecccccCCCCcccchH
Q 008452 344 NQLKHLSLVHCASLKAINI----DAPNLLSCNFWYNPFP---IISIN----------SQCSWNIHFNCQDDHDGGWFLNF 406 (565)
Q Consensus 344 ~~L~~L~L~~C~~L~~L~i----~~p~L~~~~~~g~~~~---~~~~~----------sL~~~~l~~~~~~~~~~~~l~~l 406 (565)
.+|+.|+++++. ++.+.. ..++|+.+.++++... ...+. +|+.+++..|... . +
T Consensus 433 ~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~-------l 503 (636)
T 4eco_A 433 INVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K-------L 503 (636)
T ss_dssp CCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-B-------C
T ss_pred CCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-c-------c
Confidence 478888888763 332221 2466777777776541 11111 6677777553322 1 1
Q ss_pred HHHH--hhCCCCceEEEEEecccccccccccccccCCCCCccceeEE
Q 008452 407 KDFL--RISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRL 451 (565)
Q Consensus 407 ~~~l--~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l 451 (565)
...+ .++++|++|+++.+... .+|..+.. .++|+.|.+
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~~-----l~~L~~L~L 543 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNSFS--KFPTQPLN-----SSTLKGFGI 543 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCS--SCCCGGGG-----CSSCCEEEC
T ss_pred ChhhhhccCCCcCEEECCCCCCC--CcChhhhc-----CCCCCEEEC
Confidence 1223 36777777777776655 24555554 234666665
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.48 E-value=3.2e-14 Score=161.01 Aligned_cols=155 Identities=16% Similarity=0.006 Sum_probs=61.4
Q ss_pred cCcccccCCCccEEEecCccCCC--CC--cccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--c-
Q 008452 176 LPQTVFSANFLTHLRLAGCKLEQ--PC--YAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--C- 248 (565)
Q Consensus 176 lp~~l~~~~~L~~L~L~~c~l~~--~~--~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~- 248 (565)
+|..+..+++|++|+|++|.+.+ +. .+..+++|++|+|++|.+.......++..+++|++|++++|...+.. .
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence 33444444455555555444432 22 34444455555554444421111111234444455544444332111 0
Q ss_pred --cccCcccceeEcccccccccchh-hcCccccEeeecCCCCCCCCceeecccccccccccccccc-hHHHHHHhcCCCC
Q 008452 249 --ISGAHKLKILTMETLSSELKGVK-IVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL-GQEFCTLISKFPL 324 (565)
Q Consensus 249 --i~~~~~L~~L~l~~c~~~l~~i~-~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~-~~~l~~l~~~~~~ 324 (565)
+..+++|++|++++|. -...+. ..+++|++|++++|.+ ....+. ++.+++|+.|++.+.. ...++..+.++++
T Consensus 172 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 248 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNK-ISGDVDVSRCVNLEFLDVSSNNF-STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248 (768)
T ss_dssp HHTTCCTTCCEEECCSSE-EESCCBCTTCTTCCEEECCSSCC-CSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred hhhccCCCCCEEECCCCc-ccccCCcccCCcCCEEECcCCcC-CCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCC
Confidence 2334444444444443 101111 1344455555544443 111221 4444444444443211 1223334444445
Q ss_pred cceeecccc
Q 008452 325 LEDLSLFAC 333 (565)
Q Consensus 325 L~~L~L~~C 333 (565)
|+.|+|++|
T Consensus 249 L~~L~Ls~n 257 (768)
T 3rgz_A 249 LKLLNISSN 257 (768)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 555555444
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.47 E-value=4.6e-14 Score=155.27 Aligned_cols=274 Identities=17% Similarity=0.104 Sum_probs=182.8
Q ss_pred CcEEEEEEeCCCCcCcccccccCcc-cccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452 155 GVKELDFQILPDIKDYVHTYTLPQT-VFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF 232 (565)
Q Consensus 155 ~l~~L~L~~~~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~ 232 (565)
.++++++... ....++.. +..+++|++|++++|.+.. +..+..+++|++|+|+++.+... ....+..+++
T Consensus 255 ~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~ 326 (606)
T 3t6q_A 255 SVESINLQKH-------YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPS 326 (606)
T ss_dssp EEEEEECTTC-------CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTT
T ss_pred ceeEEEeecC-------ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCc
Confidence 6777776552 22344443 5668999999999998887 77788899999999999988422 1234678999
Q ss_pred CceeEeeecCCCccc---ccccCcccceeEccccc-cccc--chhh-cCccccEeeecCCCCCCCCceeecccccccccc
Q 008452 233 LEDLNFFECLGLKLL---CISGAHKLKILTMETLS-SELK--GVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKF 305 (565)
Q Consensus 233 Le~L~L~~c~~l~~l---~i~~~~~L~~L~l~~c~-~~l~--~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 305 (565)
|++|++.+|.....+ .+..+++|+.|++++|. .... ...+ .+++|++|++++|.+ ....+..++.+++|+.|
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP-LSLKTEAFKECPQLELL 405 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC-EEECTTTTTTCTTCSEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC-CcCCHHHhcCCccCCeE
Confidence 999999999764333 24557999999999985 2222 2234 789999999999875 33334467788889988
Q ss_pred ccccc--chHHHHHHhcCCCCcceeeccccccccccc---ccCCcccEEeecCCcChhhc-------cccCCCccceeEe
Q 008452 306 RAFNL--LGQEFCTLISKFPLLEDLSLFACSSFERIT---ISSNQLKHLSLVHCASLKAI-------NIDAPNLLSCNFW 373 (565)
Q Consensus 306 ~~~~i--~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L-------~i~~p~L~~~~~~ 373 (565)
++.+. +.......+.++++|+.|++++|......+ ..+++|+.|+++++. +... --..++|+.+.++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECT
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECC
Confidence 87643 222223346788999999999885433222 245789999998885 2211 1244678888888
Q ss_pred cCCCC------ceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccc
Q 008452 374 YNPFP------IISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVE 447 (565)
Q Consensus 374 g~~~~------~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~ 447 (565)
++... +....+|+.+++..|...+.. ...+.+++.| .|+++.+.... ..|..|.. .++++
T Consensus 485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~l~~L-~L~L~~N~l~~-~~~~~~~~-----l~~L~ 550 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS-------IEALSHLKGI-YLNLASNHISI-ILPSLLPI-----LSQQR 550 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCGGG-------GGGGTTCCSC-EEECCSSCCCC-CCGGGHHH-----HHTSS
T ss_pred CCccCccChhhhccccCCCEEECCCCccCcCC-------hhHhCccccc-EEECcCCcccc-cCHhhccc-----CCCCC
Confidence 87641 223357888888764322222 2356778888 88888877441 34555555 23477
Q ss_pred eeEEE
Q 008452 448 TLRLR 452 (565)
Q Consensus 448 ~L~l~ 452 (565)
.|.+.
T Consensus 551 ~L~l~ 555 (606)
T 3t6q_A 551 TINLR 555 (606)
T ss_dssp EEECT
T ss_pred EEeCC
Confidence 77764
No 15
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.47 E-value=5.2e-14 Score=149.37 Aligned_cols=324 Identities=16% Similarity=0.135 Sum_probs=193.9
Q ss_pred HHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--C-CcccCCC----cCcEEEcCCeeechH--
Q 008452 151 AIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--P-CYAMCFL----SLKKLHLYGVYITEQ-- 221 (565)
Q Consensus 151 ~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~-~~~~~l~----~Lk~L~L~~~~~~~~-- 221 (565)
...+++++|++..+.-. ......++..+..+++|++|+|++|.+.. . .....++ +|++|+|++|.+++.
T Consensus 25 ~~~~~L~~L~L~~~~l~--~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLT--EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHTTCSEEEEESSCCC--HHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred hhcCCccEEEccCCCCC--HHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 34568888888874211 01122556667778889999998887755 1 1223344 688999988888543
Q ss_pred -HHHHHHhcCcCCceeEeeecCCCcc----cc---cccCcccceeEccccc-c--cccchh--h-cCccccEeeecCCCC
Q 008452 222 -MVQKLLHECHFLEDLNFFECLGLKL----LC---ISGAHKLKILTMETLS-S--ELKGVK--I-VASSLQQLTLQFPFE 287 (565)
Q Consensus 222 -~l~~ll~~cp~Le~L~L~~c~~l~~----l~---i~~~~~L~~L~l~~c~-~--~l~~i~--~-~~p~L~~L~l~~~~~ 287 (565)
.+...+..+++|++|++++|..... +. ....++|++|++++|. . +...+. + .+++|++|+++++.+
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 4556677888899999888864211 10 1113578888888885 1 111121 2 568888888888875
Q ss_pred CCCCceeecc-----cccccccccccc--cchH---HHHHHhcCCCCcceeeccccccc----ccc----cccCCcccEE
Q 008452 288 GQGTPVVDIA-----VCPNLKKFRAFN--LLGQ---EFCTLISKFPLLEDLSLFACSSF----ERI----TISSNQLKHL 349 (565)
Q Consensus 288 ~~~~~~~~l~-----~~~~L~~L~~~~--i~~~---~l~~l~~~~~~L~~L~L~~C~~~----~~l----~~~~~~L~~L 349 (565)
. ......+. ..++|+.|++.+ +++. .+...+..+++|+.|++++|..- ..+ ...+++|+.|
T Consensus 183 ~-~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 183 N-EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp H-HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred c-hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence 2 11111121 245788777663 3433 35666778888888888887311 111 1235788888
Q ss_pred eecCCcChhh-----cc---ccCCCccceeEecCCCC------ceec-----ccccceeeecccccCCCCcccchHHHHH
Q 008452 350 SLVHCASLKA-----IN---IDAPNLLSCNFWYNPFP------IISI-----NSQCSWNIHFNCQDDHDGGWFLNFKDFL 410 (565)
Q Consensus 350 ~L~~C~~L~~-----L~---i~~p~L~~~~~~g~~~~------~~~~-----~sL~~~~l~~~~~~~~~~~~l~~l~~~l 410 (565)
++++| ++.. +. -..++|+.+.++++... +... .+|+.+++..+.. ...+ ...+...+
T Consensus 262 ~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l--~~~~-~~~l~~~l 337 (461)
T 1z7x_W 262 WIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF--TAAC-CSHFSSVL 337 (461)
T ss_dssp ECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC--BGGG-HHHHHHHH
T ss_pred ECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC--chHH-HHHHHHHH
Confidence 88888 3432 21 13577888888877651 1111 3677777765321 1112 34467788
Q ss_pred hhCCCCceEEEEEecccccccccccccccCC-CCCccceeEEEEEeecCCcchHHHHHHHHHhhhcCCeeeeccCC
Q 008452 411 RISKKIEELSIDFLSNQSLFNLYKFSRCCNS-LPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLSTVN 485 (565)
Q Consensus 411 ~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~-~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~~~ 485 (565)
.++++|++|+++.+...+.. +..+... .. ..+++++|.+... ..+..+...+...+..+++|+++.++...
T Consensus 338 ~~~~~L~~L~Ls~n~i~~~~-~~~l~~~-l~~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 338 AQNRFLLELQISNNRLEDAG-VRELCQG-LGQPGSVLRVLWLADC--DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHCSSCCEEECCSSBCHHHH-HHHHHHH-HTSTTCCCCEEECTTS--CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred hhCCCccEEEccCCcccccc-HHHHHHH-HcCCCCceEEEECCCC--CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 89999999999987643211 1222210 11 1235888887521 22333445666667789999999995533
No 16
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=2.2e-13 Score=138.32 Aligned_cols=191 Identities=18% Similarity=0.217 Sum_probs=126.0
Q ss_pred CCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcccceeEc
Q 008452 184 NFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKLKILTM 260 (565)
Q Consensus 184 ~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l 260 (565)
++++.|+++++.+.. .+....+++|++|+|+++.+++..+...+..||+|++|+|++|...... .+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 677888888877666 4445677888888888888776667777888888888888887542211 2344788888888
Q ss_pred cccc--c--cccchhhcCccccEeeecCC-CCCCCCceeeccccc-ccccccccc----cchHHHHHHhcCCCCcceeec
Q 008452 261 ETLS--S--ELKGVKIVASSLQQLTLQFP-FEGQGTPVVDIAVCP-NLKKFRAFN----LLGQEFCTLISKFPLLEDLSL 330 (565)
Q Consensus 261 ~~c~--~--~l~~i~~~~p~L~~L~l~~~-~~~~~~~~~~l~~~~-~L~~L~~~~----i~~~~l~~l~~~~~~L~~L~L 330 (565)
++|. . ++..+...+++|++|++++| .+........+..++ +|+.|++.+ +++..++..+.++++|+.|+|
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 8874 1 12222336788888888887 541111344466777 888777653 455778888888999999999
Q ss_pred cccccccccc----ccCCcccEEeecCCcChhhcc----ccCCCccceeEec
Q 008452 331 FACSSFERIT----ISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWY 374 (565)
Q Consensus 331 ~~C~~~~~l~----~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g 374 (565)
++|..++... ..+++|+.|++++|.++..-. -..++|+.+.++|
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 9986433211 245788888888886442211 1345555554444
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.46 E-value=6.6e-13 Score=141.37 Aligned_cols=307 Identities=13% Similarity=0.086 Sum_probs=191.9
Q ss_pred CCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcc
Q 008452 123 FSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYA 202 (565)
Q Consensus 123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~ 202 (565)
..++.+.+...... ... . ....+++++|++... ....++. +..+++|++|+|++|.+...+.+
T Consensus 68 ~~L~~L~Ls~n~l~---~~~---~---~~~l~~L~~L~l~~n-------~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~ 130 (466)
T 1o6v_A 68 NNLTQINFSNNQLT---DIT---P---LKNLTKLVDILMNNN-------QIADITP-LANLTNLTGLTLFNNQITDIDPL 130 (466)
T ss_dssp TTCCEEECCSSCCC---CCG---G---GTTCTTCCEEECCSS-------CCCCCGG-GTTCTTCCEEECCSSCCCCCGGG
T ss_pred cCCCEEECCCCccC---Cch---h---hhccccCCEEECCCC-------ccccChh-hcCCCCCCEEECCCCCCCCChHH
Confidence 56777777655311 111 1 223468999988763 2233444 77889999999999988884448
Q ss_pred cCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcccccccccchh-h-cCccccEe
Q 008452 203 MCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVK-I-VASSLQQL 280 (565)
Q Consensus 203 ~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~-~-~~p~L~~L 280 (565)
..+++|++|+|+++.+.+- . -+..+++|++|++..+ ......+..+++|+.|++++|. +..+. + .+++|++|
T Consensus 131 ~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~l~~~-~~~~~~~~~l~~L~~L~l~~n~--l~~~~~l~~l~~L~~L 204 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDI--S-ALSGLTSLQQLSFGNQ-VTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNLESL 204 (466)
T ss_dssp TTCTTCSEEEEEEEEECCC--G-GGTTCTTCSEEEEEES-CCCCGGGTTCTTCCEEECCSSC--CCCCGGGGGCTTCSEE
T ss_pred cCCCCCCEEECCCCccCCC--h-hhccCCcccEeecCCc-ccCchhhccCCCCCEEECcCCc--CCCChhhccCCCCCEE
Confidence 8999999999999998332 1 2678999999998643 2222345667899999999885 22222 3 67889999
Q ss_pred eecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccccccccccc-ccCCcccEEeecCCcChhh
Q 008452 281 TLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERIT-ISSNQLKHLSLVHCASLKA 359 (565)
Q Consensus 281 ~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~-~~~~~L~~L~L~~C~~L~~ 359 (565)
+++++.+. ... .++.+++|+.|++.+..-..+ ..+..+++|+.|++++|...+... ..+++|+.|+++++. +..
T Consensus 205 ~l~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~ 279 (466)
T 1o6v_A 205 IATNNQIS-DIT--PLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISN 279 (466)
T ss_dssp ECCSSCCC-CCG--GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CCC
T ss_pred EecCCccc-ccc--cccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCc-cCc
Confidence 99888762 222 267788888877764322222 245678889999988874322221 245778888887764 221
Q ss_pred cc--ccCCCccceeEecCCC----CceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEeccccccccc
Q 008452 360 IN--IDAPNLLSCNFWYNPF----PIISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLY 433 (565)
Q Consensus 360 L~--i~~p~L~~~~~~g~~~----~~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~ 433 (565)
+. -..++|+.+.++++.. ++....+|+.+++..+... + .. .+..+++|++|.++.+...+. .
T Consensus 280 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~----~-~~----~~~~l~~L~~L~l~~n~l~~~---~ 347 (466)
T 1o6v_A 280 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS----D-IS----PVSSLTKLQRLFFYNNKVSDV---S 347 (466)
T ss_dssp CGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS----C-CG----GGGGCTTCCEEECCSSCCCCC---G
T ss_pred cccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCC----C-ch----hhccCccCCEeECCCCccCCc---h
Confidence 11 2346777777777654 2333357788888653311 1 11 156788888888887764422 2
Q ss_pred ccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHhhhcCCeeeec
Q 008452 434 KFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLS 482 (565)
Q Consensus 434 ~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~ 482 (565)
.+.. .++|+.|.+.. ....+.. . +..+++|+.+.++
T Consensus 348 ~l~~-----l~~L~~L~l~~----n~l~~~~---~-~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 348 SLAN-----LTNINWLSAGH----NQISDLT---P-LANLTRITQLGLN 383 (466)
T ss_dssp GGTT-----CTTCCEEECCS----SCCCBCG---G-GTTCTTCCEEECC
T ss_pred hhcc-----CCCCCEEeCCC----CccCccc---h-hhcCCCCCEEecc
Confidence 3333 33577777642 1222221 1 4567888888873
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.45 E-value=9.3e-14 Score=147.22 Aligned_cols=285 Identities=12% Similarity=0.033 Sum_probs=152.0
Q ss_pred ccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHH-HHHhcCcCCceeEeeecCCCccc--c-cccC
Q 008452 179 TVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQ-KLLHECHFLEDLNFFECLGLKLL--C-ISGA 252 (565)
Q Consensus 179 ~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~-~ll~~cp~Le~L~L~~c~~l~~l--~-i~~~ 252 (565)
.+..+++|++|+|++|.+.. +..+.++++|++|+|++|.+++..+. ..+..+++|++|+|++|...... . +..+
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 153 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence 34456677777777766654 44566667777777777666432222 22556677777777766543221 1 3445
Q ss_pred cccceeEccccc-ccccchh---hcCccccEeeecCCCCCCCCce-------eecccccccccccccc--cchHHHHHHh
Q 008452 253 HKLKILTMETLS-SELKGVK---IVASSLQQLTLQFPFEGQGTPV-------VDIAVCPNLKKFRAFN--LLGQEFCTLI 319 (565)
Q Consensus 253 ~~L~~L~l~~c~-~~l~~i~---~~~p~L~~L~l~~~~~~~~~~~-------~~l~~~~~L~~L~~~~--i~~~~l~~l~ 319 (565)
++|+.|++++|. .+...-. ...++|+.|+++++.+...... ..+..+++|+.|++++ ++......+.
T Consensus 154 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 233 (455)
T 3v47_A 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233 (455)
T ss_dssp TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence 677777776664 1111111 1235666677666664221100 1122446677777663 2322222221
Q ss_pred --cCCCCcceeecccccccccc---------------cccCCcccEEeecCCcChhhc----cccCCCccceeEecCCCC
Q 008452 320 --SKFPLLEDLSLFACSSFERI---------------TISSNQLKHLSLVHCASLKAI----NIDAPNLLSCNFWYNPFP 378 (565)
Q Consensus 320 --~~~~~L~~L~L~~C~~~~~l---------------~~~~~~L~~L~L~~C~~L~~L----~i~~p~L~~~~~~g~~~~ 378 (565)
...++|+.|++.+|...... .....+|+.|+++++. +..+ --..++|+.+.++++...
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~ 312 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEIN 312 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccchhhcccCCCCCEEECCCCccc
Confidence 12377888888776322110 0112567788777763 2111 113457777777776541
Q ss_pred ------ceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccceeEEE
Q 008452 379 ------IISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLR 452 (565)
Q Consensus 379 ------~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~ 452 (565)
+....+|+.+++..+...+.. ...+.++++|++|+++.+.... ..|..|.. .++|++|.+.
T Consensus 313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~-----l~~L~~L~L~ 379 (455)
T 3v47_A 313 KIDDNAFWGLTHLLKLNLSQNFLGSID-------SRMFENLDKLEVLDLSYNHIRA-LGDQSFLG-----LPNLKELALD 379 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEEC-------GGGGTTCTTCCEEECCSSCCCE-ECTTTTTT-----CTTCCEEECC
T ss_pred ccChhHhcCcccCCEEECCCCccCCcC-------hhHhcCcccCCEEECCCCcccc-cChhhccc-----cccccEEECC
Confidence 222357888888664322111 2356788999999998887441 23555555 3458888875
Q ss_pred EEeecCCcchHHHHHHHHHhhhcCCeeeecc
Q 008452 453 MVLTDISPSEYEILLDGVFWICYPRTLSLST 483 (565)
Q Consensus 453 ~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~ 483 (565)
.. ....... ..+..+++|+++.++.
T Consensus 380 ~N-~l~~~~~-----~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 380 TN-QLKSVPD-----GIFDRLTSLQKIWLHT 404 (455)
T ss_dssp SS-CCSCCCT-----TTTTTCTTCCEEECCS
T ss_pred CC-ccccCCH-----hHhccCCcccEEEccC
Confidence 31 1111110 1124578999999943
No 19
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.44 E-value=5.1e-13 Score=146.38 Aligned_cols=284 Identities=12% Similarity=0.054 Sum_probs=144.6
Q ss_pred CCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC----
Q 008452 123 FSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ---- 198 (565)
Q Consensus 123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~---- 198 (565)
+.++.+.+...... ......+..++. ..+++++|++... ....+|..+..+++|++|.++++....
T Consensus 192 ~~L~~L~L~~n~~~-~~~~~~l~~~~~--~~~~L~~L~L~~~-------~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 192 TSLEVLNFYMTEFA-KISPKDLETIAR--NCRSLVSVKVGDF-------EILELVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp CCCCEEECTTCCCS-SCCHHHHHHHHH--HCTTCCEEECSSC-------BGGGGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred CCccEEEeeccCCC-ccCHHHHHHHHh--hCCCCcEEeccCc-------cHHHHHHHHhhhhHHHhhcccccccccchHH
Confidence 56777766544310 011233433333 2367888877652 223355556666777777776532211
Q ss_pred -CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc----cccCcccceeEccccc--ccccchh
Q 008452 199 -PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC----ISGAHKLKILTMETLS--SELKGVK 271 (565)
Q Consensus 199 -~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~----i~~~~~L~~L~l~~c~--~~l~~i~ 271 (565)
......+++|+.|.++.+ ....+..++..|++|++|+|++|. ++... +..+++|+.|++..+. .++..+.
T Consensus 262 ~~~~l~~~~~L~~L~l~~~--~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~ 338 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYM--GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338 (592)
T ss_dssp SSSCCCCCTTCCEEEETTC--CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred HHHHhhccccccccCcccc--chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH
Confidence 234455666666666654 223344455666677777776665 22211 2346667776666433 1223333
Q ss_pred hcCccccEeeecC----------CCCCCCC-ceeeccccccccccccc--ccchHHHHHHhcCCCCcceeeccc---ccc
Q 008452 272 IVASSLQQLTLQF----------PFEGQGT-PVVDIAVCPNLKKFRAF--NLLGQEFCTLISKFPLLEDLSLFA---CSS 335 (565)
Q Consensus 272 ~~~p~L~~L~l~~----------~~~~~~~-~~~~l~~~~~L~~L~~~--~i~~~~l~~l~~~~~~L~~L~L~~---C~~ 335 (565)
..+++|++|++++ +...+.. .......|++|+.|.+. .+++..+..+..++++|+.|++.+ |..
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence 3566677777662 2210111 11113346666666553 456666666666677777777763 333
Q ss_pred cccc---------cccCCcccEEeecCCcC-h-----hhccccCCCccceeEecCCCCc-------eecccccceeeecc
Q 008452 336 FERI---------TISSNQLKHLSLVHCAS-L-----KAINIDAPNLLSCNFWYNPFPI-------ISINSQCSWNIHFN 393 (565)
Q Consensus 336 ~~~l---------~~~~~~L~~L~L~~C~~-L-----~~L~i~~p~L~~~~~~g~~~~~-------~~~~sL~~~~l~~~ 393 (565)
++.. ...+++|+.|++++|.+ + ..+.-..++|+.+.++++...- ....+|+.+++..+
T Consensus 419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 3332 22356777777766653 1 1221234566666665543310 01124555555431
Q ss_pred cccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452 394 CQDDHDGGWFLNFKDFLRISKKIEELSIDFLS 425 (565)
Q Consensus 394 ~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~ 425 (565)
. -. -..+..+.+++++|++|+++.+.
T Consensus 499 ~-----l~-~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 499 C-----FS-ERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp C-----CB-HHHHHHHHHHCSSCCEEEEESCB
T ss_pred C-----Cc-HHHHHHHHHhcCccCeeECcCCc
Confidence 1 01 12245566667777777777666
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.42 E-value=3.9e-13 Score=143.47 Aligned_cols=286 Identities=15% Similarity=0.034 Sum_probs=192.5
Q ss_pred ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc---
Q 008452 173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--- 247 (565)
Q Consensus 173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--- 247 (565)
...+|..+. ++|+.|+|++|.+.. +..+..+++|++|+|+++.++.- ....+.++++|++|+|++|.. +.+
T Consensus 23 l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~ 98 (477)
T 2id5_A 23 FVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRL-KLIPLG 98 (477)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCC-CSCCTT
T ss_pred cCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcC-CccCcc
Confidence 345555443 589999999999887 56788999999999999987321 123467899999999999864 222
Q ss_pred ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccch-HHHHHHhcCCCC
Q 008452 248 CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLG-QEFCTLISKFPL 324 (565)
Q Consensus 248 ~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~-~~l~~l~~~~~~ 324 (565)
.+..+++|+.|++++|. ..+..-.+ .+++|++|+++++.+ ....+..++.+++|+.|++.+..- ......+.++++
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 24568999999999985 22222234 789999999999986 333344678899999888774322 222445788999
Q ss_pred cceeeccccccccccc---ccCCcccEEeecCCcChhhccc---cCCCccceeEecCCCC------ceecccccceeeec
Q 008452 325 LEDLSLFACSSFERIT---ISSNQLKHLSLVHCASLKAINI---DAPNLLSCNFWYNPFP------IISINSQCSWNIHF 392 (565)
Q Consensus 325 L~~L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L~i---~~p~L~~~~~~g~~~~------~~~~~sL~~~~l~~ 392 (565)
|+.|+|.++....... ..+++|+.|++++|..+..+.. ...+|+.+.++++... +....+|+.+++..
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 9999999874322111 2457899999999886655432 3358899999888652 12235788888876
Q ss_pred ccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHh
Q 008452 393 NCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFW 472 (565)
Q Consensus 393 ~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~ 472 (565)
+....... ..+.++++|++|.+..+.... ..|..|.. .++|+.|.+... ....... ..+..
T Consensus 258 n~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~-----l~~L~~L~L~~N-~l~~~~~-----~~~~~ 318 (477)
T 2id5_A 258 NPISTIEG-------SMLHELLRLQEIQLVGGQLAV-VEPYAFRG-----LNYLRVLNVSGN-QLTTLEE-----SVFHS 318 (477)
T ss_dssp SCCCEECT-------TSCTTCTTCCEEECCSSCCSE-ECTTTBTT-----CTTCCEEECCSS-CCSCCCG-----GGBSC
T ss_pred CcCCccCh-------hhccccccCCEEECCCCccce-ECHHHhcC-----cccCCEEECCCC-cCceeCH-----hHcCC
Confidence 43222222 246788999999998877442 23555555 345788877531 1111111 11235
Q ss_pred hhcCCeeeec
Q 008452 473 ICYPRTLSLS 482 (565)
Q Consensus 473 ~~~l~~l~l~ 482 (565)
+++|+++.++
T Consensus 319 l~~L~~L~l~ 328 (477)
T 2id5_A 319 VGNLETLILD 328 (477)
T ss_dssp GGGCCEEECC
T ss_pred CcccCEEEcc
Confidence 6899999984
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.41 E-value=1.2e-12 Score=142.13 Aligned_cols=172 Identities=14% Similarity=0.087 Sum_probs=108.1
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH 231 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp 231 (565)
+++++|++... ......|..+..+++|++|+|++|.+.. +..+..+++|++|+|+++.+.+. ....+..++
T Consensus 26 ~~L~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFN------KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSS------CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCT
T ss_pred CCccEEECcCC------ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCC
Confidence 46777777652 1122234556677888888888887776 45677888888888888877322 223457788
Q ss_pred CCceeEeeecCCCc-c--cccccCcccceeEccccc--ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccc
Q 008452 232 FLEDLNFFECLGLK-L--LCISGAHKLKILTMETLS--SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKF 305 (565)
Q Consensus 232 ~Le~L~L~~c~~l~-~--l~i~~~~~L~~L~l~~c~--~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 305 (565)
+|++|++++|.... . -.+..+++|+.|++++|. ..+....+ .+++|++|+++++.+ ....+..++.+++|+.|
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc-cccChhhhhccccCceE
Confidence 88888888886432 1 124457888888888874 11222233 678888888888775 33344456667777766
Q ss_pred cccccchHHHHH-HhcCCCCcceeecccc
Q 008452 306 RAFNLLGQEFCT-LISKFPLLEDLSLFAC 333 (565)
Q Consensus 306 ~~~~i~~~~l~~-l~~~~~~L~~L~L~~C 333 (565)
++.......++. ++..+++|+.|++++|
T Consensus 178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 178 TLHLSESAFLLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp EEECSBSTTHHHHHHHSTTTBSEEEEESC
T ss_pred ecccCcccccchhhHhhcccccEEEccCC
Confidence 665333222332 2345667777777665
No 22
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.41 E-value=1.5e-13 Score=145.96 Aligned_cols=101 Identities=17% Similarity=0.076 Sum_probs=47.5
Q ss_pred cccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeE
Q 008452 180 VFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILT 259 (565)
Q Consensus 180 l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~ 259 (565)
+..+++|++|+|++|.+... .+..+++|++|+|+++.++.- . +..+++|++|++++|.. +.+.+..+++|+.|+
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~~N~l-~~l~l~~l~~L~~L~ 154 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNCARNTL-TEIDVSHNTQLTELD 154 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEECTTSCC-SCCCCTTCTTCCEEE
T ss_pred cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEECCCCcc-ceeccccCCcCCEEE
Confidence 34445555555555555442 144555555555555555221 1 34455555555555532 223344445555555
Q ss_pred cccccccccchhh-cCccccEeeecCCCC
Q 008452 260 METLSSELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 260 l~~c~~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
+++|. .+..+.+ .+++|++|+++++.+
T Consensus 155 l~~n~-~~~~~~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 155 CHLNK-KITKLDVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp CTTCS-CCCCCCCTTCTTCCEEECCSSCC
T ss_pred CCCCC-cccccccccCCcCCEEECCCCcc
Confidence 55543 2222223 445555555555544
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.41 E-value=4.2e-13 Score=147.59 Aligned_cols=275 Identities=17% Similarity=0.112 Sum_probs=185.6
Q ss_pred CccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcccceeEc
Q 008452 185 FLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHKLKILTM 260 (565)
Q Consensus 185 ~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l 260 (565)
+|++|++++|.+.. +..+..+++|++|+|+++.++ .+...+..+++|++|++++|..... ..+..+++|+.|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 79999999998887 445889999999999999884 2333467899999999999976432 24566899999999
Q ss_pred cccc-c-cccchhh-cCccccEeeecCCCCCCCCc--eeecccccccccccccccch-HHHHHHhcCCCCcceeeccccc
Q 008452 261 ETLS-S-ELKGVKI-VASSLQQLTLQFPFEGQGTP--VVDIAVCPNLKKFRAFNLLG-QEFCTLISKFPLLEDLSLFACS 334 (565)
Q Consensus 261 ~~c~-~-~l~~i~~-~~p~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~~~~i~~-~~l~~l~~~~~~L~~L~L~~C~ 334 (565)
++|. . .+..-.+ .+++|++|+++++.+ .... +..++.+++|+.|++.+..- ...+..+.++++|+.|++++|.
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCcc-ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 9985 1 1112223 789999999999986 2211 33578899999998874322 2334567789999999999985
Q ss_pred ccccc----cccCCcccEEeecCCcChhhcc----ccCCCccceeEecCCCC---------ceecccccceeeecccccC
Q 008452 335 SFERI----TISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNPFP---------IISINSQCSWNIHFNCQDD 397 (565)
Q Consensus 335 ~~~~l----~~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~~~---------~~~~~sL~~~~l~~~~~~~ 397 (565)
..+.. ....++|+.|++++|. +.... -..++|+.+.++++... +....+|+.+++..+...+
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred CCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 43322 1245789999999885 22211 24578889988887641 2223578899887644332
Q ss_pred CCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHhhhcCC
Q 008452 398 HDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPR 477 (565)
Q Consensus 398 ~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~ 477 (565)
..+. .+.++++|++|+++.+.... ..|..|.. ++.|++.+.+...... ....+...++|+
T Consensus 491 ~~~~-------~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~--------l~~L~L~L~~N~l~~~----~~~~~~~l~~L~ 550 (606)
T 3t6q_A 491 IDQH-------AFTSLKMMNHVDLSHNRLTS-SSIEALSH--------LKGIYLNLASNHISII----LPSLLPILSQQR 550 (606)
T ss_dssp ECTT-------TTTTCTTCCEEECCSSCCCG-GGGGGGTT--------CCSCEEECCSSCCCCC----CGGGHHHHHTSS
T ss_pred cChh-------hhccccCCCEEECCCCccCc-CChhHhCc--------ccccEEECcCCccccc----CHhhcccCCCCC
Confidence 2222 56788999999999887432 34566666 4444333321111110 112234568999
Q ss_pred eeeecc
Q 008452 478 TLSLST 483 (565)
Q Consensus 478 ~l~l~~ 483 (565)
++.++.
T Consensus 551 ~L~l~~ 556 (606)
T 3t6q_A 551 TINLRQ 556 (606)
T ss_dssp EEECTT
T ss_pred EEeCCC
Confidence 999943
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.40 E-value=5.6e-13 Score=138.47 Aligned_cols=248 Identities=18% Similarity=0.114 Sum_probs=122.1
Q ss_pred CCcEEEEEEeCCCCcCcccccccCccc-ccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTV-FSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC 230 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c 230 (565)
.+++.+++.. .....+|..+ ..+++|++|+|++|.+.. +..+..+++|++|+|+++.++.- ....+..+
T Consensus 45 ~~l~~l~l~~-------~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l 116 (390)
T 3o6n_A 45 NNQKIVTFKN-------STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNV 116 (390)
T ss_dssp CCCSEEEEES-------CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTC
T ss_pred CCceEEEecC-------CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCC
Confidence 4666666665 2234455543 346677777777776655 33566677777777777666221 11234566
Q ss_pred cCCceeEeeecCCCcccc---cccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccc
Q 008452 231 HFLEDLNFFECLGLKLLC---ISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKF 305 (565)
Q Consensus 231 p~Le~L~L~~c~~l~~l~---i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 305 (565)
++|++|++++|... .+. +..+++|+.|++++|. ..+..-.+ .+++|++|+++++.+.. ..++.+++|+.|
T Consensus 117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~L~~L 191 (390)
T 3o6n_A 117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----VDLSLIPSLFHA 191 (390)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB----CCGGGCTTCSEE
T ss_pred CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc----ccccccccccee
Confidence 77777777776432 221 2345677777777664 11111123 45677777777766511 234555666655
Q ss_pred cccccchHHHHHHhcCCCCcceeecccccccccccccCCcccEEeecCCcChhhcc--ccCCCccceeEecCCCC-----
Q 008452 306 RAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAIN--IDAPNLLSCNFWYNPFP----- 378 (565)
Q Consensus 306 ~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~~~~L~~L~L~~C~~L~~L~--i~~p~L~~~~~~g~~~~----- 378 (565)
++....-.. +...++|+.|++++|.....-.....+|+.|++.++. +.... -..++|+.+.++++...
T Consensus 192 ~l~~n~l~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 192 NVSYNLLST----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp ECCSSCCSE----EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ecccccccc----cCCCCcceEEECCCCeeeeccccccccccEEECCCCC-CcccHHHcCCCCccEEECCCCcCCCcChh
Confidence 554221110 1233466666666643211111122456666655552 11110 13345555555554431
Q ss_pred -ceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEeccc
Q 008452 379 -IISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQ 427 (565)
Q Consensus 379 -~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~ 427 (565)
+....+|+.+++..+...+ +......+++|++|+++.+...
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~--------~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVA--------LNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCE--------EECSSSCCTTCCEEECCSSCCC
T ss_pred HccccccCCEEECCCCcCcc--------cCcccCCCCCCCEEECCCCcce
Confidence 1112345555554322110 1112244566666666655543
No 25
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.39 E-value=5.3e-13 Score=135.37 Aligned_cols=170 Identities=23% Similarity=0.260 Sum_probs=126.5
Q ss_pred CCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcccceeE
Q 008452 183 ANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKLKILT 259 (565)
Q Consensus 183 ~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~ 259 (565)
..+++.|+|+++.+.. +..+..+++|++|+|+++.+. .+...+..+++|++|+|++|... .+ .+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 3689999999999888 777888999999999999885 34445678999999999999653 33 345689999999
Q ss_pred cccccccccchh--h----------cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcce
Q 008452 260 METLSSELKGVK--I----------VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLED 327 (565)
Q Consensus 260 l~~c~~~l~~i~--~----------~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~ 327 (565)
+++|. ....+. + .+++|++|++++|.+. ..+..++.+++|+.|++.+..-..++..+..+++|+.
T Consensus 157 L~~n~-~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 157 IRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEET-TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred CCCCC-CccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence 99986 222221 1 3889999999999863 4555688888888888775433344445778889999
Q ss_pred eecccccccccccc---cCCcccEEeecCCcChh
Q 008452 328 LSLFACSSFERITI---SSNQLKHLSLVHCASLK 358 (565)
Q Consensus 328 L~L~~C~~~~~l~~---~~~~L~~L~L~~C~~L~ 358 (565)
|+|++|...+.++. ..++|+.|++++|..+.
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 99998876666543 24567777777665443
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.37 E-value=2.8e-12 Score=135.81 Aligned_cols=303 Identities=12% Similarity=0.062 Sum_probs=181.7
Q ss_pred CCCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--C
Q 008452 122 KFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--P 199 (565)
Q Consensus 122 ~~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~ 199 (565)
-..++.+.+............. +...+++++|+|... ......|..+..+++|++|+|++|.+.. +
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~------~~~l~~L~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 120 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNT------FRGLSSLIILKLDYN------QFLQLETGAFNGLANLEVLTLTQCNLDGAVL 120 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTT------TTTCTTCCEEECTTC------TTCEECTTTTTTCTTCCEEECTTSCCBTHHH
T ss_pred CccccEEECcCCcccceECccc------ccccccCCEEeCCCC------ccCccChhhccCcccCCEEeCCCCCCCcccc
Confidence 3678888887664110000111 112368999998762 1223346677889999999999999876 3
Q ss_pred C--cccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--cccc--CcccceeEccccc-ccccch--
Q 008452 200 C--YAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISG--AHKLKILTMETLS-SELKGV-- 270 (565)
Q Consensus 200 ~--~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~--~~~L~~L~l~~c~-~~l~~i-- 270 (565)
. .+..+++|++|+|+++.+.......++..+++|++|++++|...... .+.. .++|+.|+++++. ..+...
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~ 200 (455)
T 3v47_A 121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200 (455)
T ss_dssp HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCT
T ss_pred CcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhc
Confidence 3 37889999999999999843322334788999999999999653211 1211 2789999999985 111111
Q ss_pred -------hhcCccccEeeecCCCCCCCCceeeccc---ccccccccccccch--H-----------HHHHHhcCCCCcce
Q 008452 271 -------KIVASSLQQLTLQFPFEGQGTPVVDIAV---CPNLKKFRAFNLLG--Q-----------EFCTLISKFPLLED 327 (565)
Q Consensus 271 -------~~~~p~L~~L~l~~~~~~~~~~~~~l~~---~~~L~~L~~~~i~~--~-----------~l~~l~~~~~~L~~ 327 (565)
....++|++|++++|.+ ....+..+.. .++|+.|++.+... . ...-.....++|+.
T Consensus 201 ~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 279 (455)
T 3v47_A 201 GWEKCGNPFKNTSITTLDLSGNGF-KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279 (455)
T ss_dssp THHHHCCTTTTCEEEEEECTTSCC-CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred cccccccccccceeeeEecCCCcc-cccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceE
Confidence 12458999999999986 2222222222 24555555432100 0 00000012367888
Q ss_pred eeccccccccccc---ccCCcccEEeecCCcChhhcc----ccCCCccceeEecCCCC------ceecccccceeeeccc
Q 008452 328 LSLFACSSFERIT---ISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNPFP------IISINSQCSWNIHFNC 394 (565)
Q Consensus 328 L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~~~------~~~~~sL~~~~l~~~~ 394 (565)
|++++|...+.++ ..+++|+.|+++++. +..+. -..++|+.+.++++... +....+|+.+++..|.
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 358 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc
Confidence 8888874433222 234678888887764 22221 13467777777777541 1223578888887643
Q ss_pred ccCCCCcccchHHHHHhhCCCCceEEEEEeccccccccc-ccccccCCCCCccceeEEE
Q 008452 395 QDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLY-KFSRCCNSLPIQVETLRLR 452 (565)
Q Consensus 395 ~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~-~~~~c~~~~p~~l~~L~l~ 452 (565)
..+..+ ..+.++++|++|+++.+... .+|. .|.. .++|+.|.+.
T Consensus 359 l~~~~~-------~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~-----l~~L~~L~l~ 403 (455)
T 3v47_A 359 IRALGD-------QSFLGLPNLKELALDTNQLK--SVPDGIFDR-----LTSLQKIWLH 403 (455)
T ss_dssp CCEECT-------TTTTTCTTCCEEECCSSCCS--CCCTTTTTT-----CTTCCEEECC
T ss_pred ccccCh-------hhccccccccEEECCCCccc--cCCHhHhcc-----CCcccEEEcc
Confidence 222222 25677899999999988755 2232 3444 3357777765
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=9.5e-13 Score=144.66 Aligned_cols=229 Identities=14% Similarity=0.051 Sum_probs=105.7
Q ss_pred ccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcc
Q 008452 179 TVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHK 254 (565)
Q Consensus 179 ~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~ 254 (565)
.+..+++|++|+|++|.+.. +..+.++++|++|+|++|.++. ....++..+++|+.|+|++|...... .+..+++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 172 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence 44455566666666665555 2234556666666666665521 01122345566666666655432211 2334556
Q ss_pred cceeEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccc
Q 008452 255 LKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFAC 333 (565)
Q Consensus 255 L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C 333 (565)
|+.|++++| .+..+.+ .+++|+.|+++++.+. .+...++|+.|++++..-..++ ....++|+.|+|++|
T Consensus 173 L~~L~L~~N--~l~~~~~~~l~~L~~L~l~~n~l~------~l~~~~~L~~L~ls~n~l~~~~--~~~~~~L~~L~L~~n 242 (597)
T 3oja_B 173 LQNLQLSSN--RLTHVDLSLIPSLFHANVSYNLLS------TLAIPIAVEELDASHNSINVVR--GPVNVELTILKLQHN 242 (597)
T ss_dssp CCEEECTTS--CCSBCCGGGCTTCSEEECCSSCCS------EEECCTTCSEEECCSSCCCEEE--CSCCSCCCEEECCSS
T ss_pred CcEEECcCC--CCCCcChhhhhhhhhhhcccCccc------cccCCchhheeeccCCcccccc--cccCCCCCEEECCCC
Confidence 666666655 3333333 4556666666555431 1233344555554422111111 012246666666665
Q ss_pred cccccc-cccCCcccEEeecCCcChhhcc----ccCCCccceeEecCCCC-----ceecccccceeeecccccCCCCccc
Q 008452 334 SSFERI-TISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNPFP-----IISINSQCSWNIHFNCQDDHDGGWF 403 (565)
Q Consensus 334 ~~~~~l-~~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~~~-----~~~~~sL~~~~l~~~~~~~~~~~~l 403 (565)
...+.- ...+++|+.|+++++. +..+. ...++|+.+.++++... +..+.+|+.+++..|...
T Consensus 243 ~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~------- 314 (597)
T 3oja_B 243 NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL------- 314 (597)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-------
T ss_pred CCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-------
Confidence 322111 1134566666666553 21110 12345555555555431 111235666666543211
Q ss_pred chHHHHHhhCCCCceEEEEEeccc
Q 008452 404 LNFKDFLRISKKIEELSIDFLSNQ 427 (565)
Q Consensus 404 ~~l~~~l~~l~~Le~L~i~~~~~~ 427 (565)
.+...+..+++|++|.++.+...
T Consensus 315 -~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 315 -HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp -CCGGGHHHHTTCSEEECCSSCCC
T ss_pred -ccCcccccCCCCCEEECCCCCCC
Confidence 11112355666766666665543
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.36 E-value=1.2e-12 Score=144.05 Aligned_cols=170 Identities=13% Similarity=0.060 Sum_probs=123.1
Q ss_pred cccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeE
Q 008452 180 VFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILT 259 (565)
Q Consensus 180 l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~ 259 (565)
+..+++|+.|+++++.+...+.+..+++|++|++++|.+ ..+..+ .++.|++|++.+|.......+..+++|+.|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l--~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL--KQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC--SSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccC--cccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 556789999999999887744778889999999999988 223333 8999999999999777766677789999999
Q ss_pred ccccc-cccc--chhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHH-H-HHhcCCCCcceeecccc
Q 008452 260 METLS-SELK--GVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEF-C-TLISKFPLLEDLSLFAC 333 (565)
Q Consensus 260 l~~c~-~~l~--~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l-~-~l~~~~~~L~~L~L~~C 333 (565)
+++|. .+.. ...+ .+++|++|++++|.+. ..+..+..+++|+.|++.+..-... + ..+.++++|+.|++++|
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE--EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCccc--cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 99885 2221 2233 7899999999998752 2335677888888888764322221 2 45678899999999988
Q ss_pred ccccccc---ccCCcccEEeecCCc
Q 008452 334 SSFERIT---ISSNQLKHLSLVHCA 355 (565)
Q Consensus 334 ~~~~~l~---~~~~~L~~L~L~~C~ 355 (565)
...+..+ ..+++|+.|++++|.
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCE
T ss_pred CCCccchhhhcCCCCCCEEECCCCc
Confidence 5443332 234677888777763
No 29
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.36 E-value=2.8e-13 Score=143.72 Aligned_cols=316 Identities=16% Similarity=0.115 Sum_probs=185.6
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC------CCcccCCCcCcEEEcCCeeechHHHHHHH
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ------PCYAMCFLSLKKLHLYGVYITEQMVQKLL 227 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~------~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll 227 (565)
+.+++|++.... .....+...+..+++|++|+|++|.+.. +..+..+++|++|+|+++.+++..+..+.
T Consensus 3 ~~l~~L~Ls~~~-----l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQCEE-----LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEESCC-----CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred ccceehhhhhcc-----cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 367888887521 1112222334567899999999998874 23456789999999999999777777777
Q ss_pred hcCc----CCceeEeeecCCCc----cc--ccccCcccceeEccccc---ccccchhh----cCccccEeeecCCCCCCC
Q 008452 228 HECH----FLEDLNFFECLGLK----LL--CISGAHKLKILTMETLS---SELKGVKI----VASSLQQLTLQFPFEGQG 290 (565)
Q Consensus 228 ~~cp----~Le~L~L~~c~~l~----~l--~i~~~~~L~~L~l~~c~---~~l~~i~~----~~p~L~~L~l~~~~~~~~ 290 (565)
..++ +|++|++++|.... .+ .+..+++|++|++++|. .+...+.. ..++|++|++++|.+...
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 7777 79999999996532 11 24558999999999986 11222221 246799999999986222
Q ss_pred C---ceeecccccccccccccc--cchHHHHHHh----cCCCCcceeecccccccc----ccc---ccCCcccEEeecCC
Q 008452 291 T---PVVDIAVCPNLKKFRAFN--LLGQEFCTLI----SKFPLLEDLSLFACSSFE----RIT---ISSNQLKHLSLVHC 354 (565)
Q Consensus 291 ~---~~~~l~~~~~L~~L~~~~--i~~~~l~~l~----~~~~~L~~L~L~~C~~~~----~l~---~~~~~L~~L~L~~C 354 (565)
. ....+..+++|+.|++.+ +++.....+. ...++|+.|++++|..-. .+. ..+++|+.|++++|
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 1 133456778999888774 4444333333 256799999999984322 122 24688999999988
Q ss_pred cChhh-----cc----ccCCCccceeEecCCCCc------ee----cccccceeeecccccCCCCcccchHHHHHh-hCC
Q 008452 355 ASLKA-----IN----IDAPNLLSCNFWYNPFPI------IS----INSQCSWNIHFNCQDDHDGGWFLNFKDFLR-ISK 414 (565)
Q Consensus 355 ~~L~~-----L~----i~~p~L~~~~~~g~~~~~------~~----~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~-~l~ 414 (565)
. +.. +. -..++|+.+.++++.... .. ..+|+.+++..+.. ...+ ...+...+. +.+
T Consensus 238 ~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i--~~~~-~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 238 K-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL--GDEG-ARLLCETLLEPGC 313 (461)
T ss_dssp B-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC--HHHH-HHHHHHHHTSTTC
T ss_pred c-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC--chHH-HHHHHHHhccCCc
Confidence 4 322 11 135678888887775421 11 13566666654221 1111 112222222 235
Q ss_pred CCceEEEEEeccccc---ccccccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHh-hhcCCeeeeccCC
Q 008452 415 KIEELSIDFLSNQSL---FNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFW-ICYPRTLSLSTVN 485 (565)
Q Consensus 415 ~Le~L~i~~~~~~~~---~~~~~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~l~~l~l~~~~ 485 (565)
+|++|.++.+..... .++..+.. .+++++|.+... .........+...+.. .++|+++.++.+.
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~-----~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQ-----NRFLLELQISNN--RLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHH-----CSSCCEEECCSS--BCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhh-----CCCccEEEccCC--ccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 777777776653311 12333333 234666665421 1111112222222221 4577777775433
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.34 E-value=1.2e-12 Score=136.05 Aligned_cols=264 Identities=15% Similarity=0.070 Sum_probs=154.5
Q ss_pred hCCcEEEEEEeCCCCcCcccccccCc-ccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhc
Q 008452 153 ENGVKELDFQILPDIKDYVHTYTLPQ-TVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHE 229 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~ 229 (565)
.+++++|++... ....++. .+..+++|++|+|++|.+.. +..+..+++|++|+|+++.++. ....++..
T Consensus 68 l~~L~~L~L~~n-------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~ 139 (390)
T 3o6n_A 68 FRQVELLNLNDL-------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHN 139 (390)
T ss_dssp CCCCSEEECTTS-------CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred cccCcEEECCCC-------cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcC
Confidence 468888888652 2223333 56678899999999998877 3456789999999999988731 11223567
Q ss_pred CcCCceeEeeecCCCcc--cccccCcccceeEcccccccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452 230 CHFLEDLNFFECLGLKL--LCISGAHKLKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR 306 (565)
Q Consensus 230 cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 306 (565)
+++|++|++++|..... -.+..+++|+.|++++| .+..+.+ ..++|+.|+++++.+. .+...++|+.|+
T Consensus 140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~L~~L~ 211 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN--RLTHVDLSLIPSLFHANVSYNLLS------TLAIPIAVEELD 211 (390)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS--CCSBCCGGGCTTCSEEECCSSCCS------EEECCSSCSEEE
T ss_pred CCCCcEEECCCCccCccChhhccCCCCCCEEECCCC--cCCccccccccccceeeccccccc------ccCCCCcceEEE
Confidence 89999999998865322 12455788999999888 4444444 5778888888777641 222334555555
Q ss_pred ccccchHHHHHHhcCCCCcceeecccccccccc-cccCCcccEEeecCCcChhhcc----ccCCCccceeEecCCCC---
Q 008452 307 AFNLLGQEFCTLISKFPLLEDLSLFACSSFERI-TISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNPFP--- 378 (565)
Q Consensus 307 ~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l-~~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~~~--- 378 (565)
+.+..-..++ ....++|+.|++++|...+.- ....++|+.|+++++. ++.+. ...++|+.+.++++...
T Consensus 212 l~~n~l~~~~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (390)
T 3o6n_A 212 ASHNSINVVR--GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALN 288 (390)
T ss_dssp CCSSCCCEEE--CCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEE
T ss_pred CCCCeeeecc--ccccccccEEECCCCCCcccHHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccC
Confidence 4422111111 122356666666665221111 1133566666666553 21110 12345556655555431
Q ss_pred --ceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccceeEEE
Q 008452 379 --IISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLR 452 (565)
Q Consensus 379 --~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~ 452 (565)
+....+|+.+++..+... .+...+..+++|++|.+..+..... + +.. .++++.|.+.
T Consensus 289 ~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~l~~L~~L~L~~N~i~~~--~--~~~-----~~~L~~L~l~ 347 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHNHLL--------HVERNQPQFDRLENLYLDHNSIVTL--K--LST-----HHTLKNLTLS 347 (390)
T ss_dssp CSSSCCTTCCEEECCSSCCC--------CCGGGHHHHTTCSEEECCSSCCCCC--C--CCT-----TCCCSEEECC
T ss_pred cccCCCCCCCEEECCCCcce--------ecCccccccCcCCEEECCCCcccee--C--chh-----hccCCEEEcC
Confidence 112346778887654321 1222356788999999988875522 2 222 3358888875
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.33 E-value=1.4e-12 Score=143.48 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=59.6
Q ss_pred CCcEEEEEEeCCCCcCccccccc-CcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTL-PQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC 230 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c 230 (565)
+++++|+++.. ....+ |..+..+++|++|+|++|.+.. +..+..+++|++|+|++|.+....+...+.++
T Consensus 80 ~~L~~L~Ls~n-------~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l 152 (606)
T 3vq2_A 80 HHLSNLILTGN-------PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152 (606)
T ss_dssp TTCCEEECTTC-------CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC
T ss_pred hhcCEeECCCC-------cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhc
Confidence 57888887652 22233 6667778888888888888776 35677888888888888877432334456778
Q ss_pred cCCceeEeeecCC
Q 008452 231 HFLEDLNFFECLG 243 (565)
Q Consensus 231 p~Le~L~L~~c~~ 243 (565)
++|++|++++|..
T Consensus 153 ~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 153 TNLVHVDLSYNYI 165 (606)
T ss_dssp TTCCEEECCSSCC
T ss_pred CCCCEEEccCCcc
Confidence 8888888888754
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.33 E-value=1.4e-12 Score=138.50 Aligned_cols=295 Identities=16% Similarity=0.051 Sum_probs=186.4
Q ss_pred hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452 153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF 232 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~ 232 (565)
.+++++|++... ....+| .+..+++|++|+|++|.+...+ +..+++|++|+|+++.++.- . +..+++
T Consensus 41 l~~L~~L~Ls~n-------~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~ 107 (457)
T 3bz5_A 41 LATLTSLDCHNS-------SITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL--D--VTPLTK 107 (457)
T ss_dssp HTTCCEEECCSS-------CCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC--C--CTTCTT
T ss_pred cCCCCEEEccCC-------CcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee--e--cCCCCc
Confidence 478999998763 222345 5778999999999999988743 78899999999999998432 2 678999
Q ss_pred CceeEeeecCCCcccccccCcccceeEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccc
Q 008452 233 LEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL 311 (565)
Q Consensus 233 Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~ 311 (565)
|++|++++|.. +.+.+..+++|+.|++++| .+..+.+ .+++|++|++++|.. ... ..++.+++|+.|++++..
T Consensus 108 L~~L~L~~N~l-~~l~~~~l~~L~~L~l~~N--~l~~l~l~~l~~L~~L~l~~n~~-~~~--~~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 108 LTYLNCDTNKL-TKLDVSQNPLLTYLNCARN--TLTEIDVSHNTQLTELDCHLNKK-ITK--LDVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CCEEECCSSCC-SCCCCTTCTTCCEEECTTS--CCSCCCCTTCTTCCEEECTTCSC-CCC--CCCTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcC-CeecCCCCCcCCEEECCCC--ccceeccccCCcCCEEECCCCCc-ccc--cccccCCcCCEEECCCCc
Confidence 99999999954 4456777899999999998 4544556 789999999999953 122 257888999988887433
Q ss_pred hHHHHHHhcCCCCcceeeccccccccccc-ccCCcccEEeecCCcChhhccc-cCCCccceeEecCCC---Cceeccccc
Q 008452 312 GQEFCTLISKFPLLEDLSLFACSSFERIT-ISSNQLKHLSLVHCASLKAINI-DAPNLLSCNFWYNPF---PIISINSQC 386 (565)
Q Consensus 312 ~~~l~~l~~~~~~L~~L~L~~C~~~~~l~-~~~~~L~~L~L~~C~~L~~L~i-~~p~L~~~~~~g~~~---~~~~~~sL~ 386 (565)
-..++ +..+++|+.|++++|.- ..+. ..+++|+.|+++++. ++.+.+ ..++|+.+.++++.. +...+.+|+
T Consensus 182 l~~l~--l~~l~~L~~L~l~~N~l-~~~~l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 182 ITELD--VSQNKLLNRLNCDTNNI-TKLDLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLT 257 (457)
T ss_dssp CCCCC--CTTCTTCCEEECCSSCC-SCCCCTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred cceec--cccCCCCCEEECcCCcC-CeeccccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence 22233 67889999999998742 2222 235788888887763 333332 335677777777654 222223444
Q ss_pred ceeeecccccCCCC---cccchHHHHHhhCCCCceEEEEEec-cccccccccccc---ccCCCCCccceeEEEEEeecCC
Q 008452 387 SWNIHFNCQDDHDG---GWFLNFKDFLRISKKIEELSIDFLS-NQSLFNLYKFSR---CCNSLPIQVETLRLRMVLTDIS 459 (565)
Q Consensus 387 ~~~l~~~~~~~~~~---~~l~~l~~~l~~l~~Le~L~i~~~~-~~~~~~~~~~~~---c~~~~p~~l~~L~l~~~~~~~~ 459 (565)
.+++..+....-+. .....+ ...++++|+.|.++.+. .+ .+|..... -....-++++.|.+... .
T Consensus 258 ~L~l~~n~L~~L~l~~n~~~~~~--~~~~l~~L~~L~Ls~n~~l~--~l~~~~~~L~~L~l~~~~~L~~L~L~~N----~ 329 (457)
T 3bz5_A 258 TLHCIQTDLLEIDLTHNTQLIYF--QAEGCRKIKELDVTHNTQLY--LLDCQAAGITELDLSQNPKLVYLYLNNT----E 329 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEE--ECTTCTTCCCCCCTTCTTCC--EEECTTCCCSCCCCTTCTTCCEEECTTC----C
T ss_pred EEeccCCCCCEEECCCCccCCcc--cccccccCCEEECCCCcccc--eeccCCCcceEechhhcccCCEEECCCC----c
Confidence 43332211000000 000001 13567889999988776 22 22221111 00111234666665321 1
Q ss_pred cchHHHHHHHHHhhhcCCeeeecc
Q 008452 460 PSEYEILLDGVFWICYPRTLSLST 483 (565)
Q Consensus 460 ~~~~~~~~~~l~~~~~l~~l~l~~ 483 (565)
..++ . +..+++|+++.++.
T Consensus 330 l~~l----~-l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 330 LTEL----D-VSHNTKLKSLSCVN 348 (457)
T ss_dssp CSCC----C-CTTCTTCSEEECCS
T ss_pred cccc----c-cccCCcCcEEECCC
Confidence 1111 1 45678999998843
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.32 E-value=6.9e-12 Score=143.40 Aligned_cols=259 Identities=15% Similarity=0.115 Sum_probs=138.5
Q ss_pred CCcEEEEEEeCCCCcCccccccc-CcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHH-HHHhc
Q 008452 154 NGVKELDFQILPDIKDYVHTYTL-PQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQ-KLLHE 229 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~-~ll~~ 229 (565)
.+++.|+|... .....+ |..+.++++|++|+|++|.+.. +..+.++++|++|+|++|.+.+.... ..+..
T Consensus 48 ~~L~~LdLs~n------~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 48 EQLQLLELGSQ------YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp CSCSEEEECTT------CCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred ccCeEEeCCCC------CCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 46666666552 112233 4455667777777777776665 55667777777777777766332111 12456
Q ss_pred CcCCceeEeeecCCCcc---cccccCcccceeEccccc-ccccchhh-c--CccccEeeecCCCCCCCCceeecccccc-
Q 008452 230 CHFLEDLNFFECLGLKL---LCISGAHKLKILTMETLS-SELKGVKI-V--ASSLQQLTLQFPFEGQGTPVVDIAVCPN- 301 (565)
Q Consensus 230 cp~Le~L~L~~c~~l~~---l~i~~~~~L~~L~l~~c~-~~l~~i~~-~--~p~L~~L~l~~~~~~~~~~~~~l~~~~~- 301 (565)
+++|++|+|++|...+. -.+..+++|+.|++++|. .....-.+ . .++|+.|+++++.+ ....+..++.+++
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l-~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL-YSRVSVDWGKCMNP 200 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS-CCCCCCCCCSSSCT
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcc-ccccccchhhcCCc
Confidence 77777777777754322 124456777777777764 11111111 1 26777777777765 3334444555544
Q ss_pred -----ccccccccc--chHH---HHH--------------------------------HhcC--CCCcceeecccccccc
Q 008452 302 -----LKKFRAFNL--LGQE---FCT--------------------------------LISK--FPLLEDLSLFACSSFE 337 (565)
Q Consensus 302 -----L~~L~~~~i--~~~~---l~~--------------------------------l~~~--~~~L~~L~L~~C~~~~ 337 (565)
|+.|+++.. +... +.. .+.+ .++|+.|+|++|....
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 666665422 1111 000 0111 2567777776653222
Q ss_pred ccc---ccCCcccEEeecCCcChhhcc----ccCCCccceeEecCCC------CceecccccceeeecccccCCCCcccc
Q 008452 338 RIT---ISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNPF------PIISINSQCSWNIHFNCQDDHDGGWFL 404 (565)
Q Consensus 338 ~l~---~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~~------~~~~~~sL~~~~l~~~~~~~~~~~~l~ 404 (565)
... ...++|+.|+++++. +..+. -..++|+.+.++++.. .+....+|+.+++..|.......+
T Consensus 281 ~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~--- 356 (844)
T 3j0a_A 281 LNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ--- 356 (844)
T ss_dssp ECSCCSSSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS---
T ss_pred cChhhhhcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh---
Confidence 111 134567777766653 22111 1235677777776653 112224677777765432222222
Q ss_pred hHHHHHhhCCCCceEEEEEeccc
Q 008452 405 NFKDFLRISKKIEELSIDFLSNQ 427 (565)
Q Consensus 405 ~l~~~l~~l~~Le~L~i~~~~~~ 427 (565)
.+.++++|++|+++.+...
T Consensus 357 ----~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 357 ----TFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp ----CSCSCCCCCEEEEETCCSC
T ss_pred ----hhcCCCCCCEEECCCCCCC
Confidence 3566788888888877644
No 34
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.32 E-value=1.1e-11 Score=135.91 Aligned_cols=208 Identities=17% Similarity=0.045 Sum_probs=110.2
Q ss_pred CcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCc
Q 008452 155 GVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLE 234 (565)
Q Consensus 155 ~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le 234 (565)
+++.|++.. .....+|..+. ++|++|+|++|.+...+. .+++|++|+|++|.++. +. ..+++|+
T Consensus 41 ~l~~L~ls~-------n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--lp---~~l~~L~ 104 (622)
T 3g06_A 41 GNAVLNVGE-------SGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LP---VLPPGLL 104 (622)
T ss_dssp CCCEEECCS-------SCCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC--CC---CCCTTCC
T ss_pred CCcEEEecC-------CCcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc--CC---CCCCCCC
Confidence 566666654 22335565554 677777777777765222 56777777777777621 11 1567777
Q ss_pred eeEeeecCCCcccccccCcccceeEcccccccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHH
Q 008452 235 DLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQE 314 (565)
Q Consensus 235 ~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~ 314 (565)
+|+|++|... .+.. .+++|+.|++++| .+..+....++|++|++++|.+.. .+ ...++|+.|.+.+..-..
T Consensus 105 ~L~Ls~N~l~-~l~~-~l~~L~~L~L~~N--~l~~lp~~l~~L~~L~Ls~N~l~~--l~---~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 105 ELSIFSNPLT-HLPA-LPSGLCKLWIFGN--QLTSLPVLPPGLQELSVSDNQLAS--LP---ALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp EEEECSCCCC-CCCC-CCTTCCEEECCSS--CCSCCCCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC
T ss_pred EEECcCCcCC-CCCC-CCCCcCEEECCCC--CCCcCCCCCCCCCEEECcCCcCCC--cC---CccCCCCEEECCCCCCCC
Confidence 7777777432 2222 3467777777776 344444445777777777776522 11 123455555544322111
Q ss_pred HHHHhcCCCCcceeecccccccccccccCCcccEEeecCCcChhhccccCCCccceeEecCCCCc--eecccccceeeec
Q 008452 315 FCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPI--ISINSQCSWNIHF 392 (565)
Q Consensus 315 l~~l~~~~~~L~~L~L~~C~~~~~l~~~~~~L~~L~L~~C~~L~~L~i~~p~L~~~~~~g~~~~~--~~~~sL~~~~l~~ 392 (565)
++ ..+++|+.|++++|. +..++....+|+.|.+.++ +++.+.-..++|+.+.++++.... ....+|+.+++..
T Consensus 176 l~---~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSG 250 (622)
T ss_dssp CC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred Cc---ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCC-cccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCC
Confidence 21 445667777776653 3333333456666666655 233332223455555555543311 1123455555543
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=5.6e-12 Score=143.09 Aligned_cols=273 Identities=9% Similarity=-0.004 Sum_probs=170.5
Q ss_pred HhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCcc-CCC---CC-------cccCCCcCcEEEcCCeeech
Q 008452 152 IENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCK-LEQ---PC-------YAMCFLSLKKLHLYGVYITE 220 (565)
Q Consensus 152 ~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~-l~~---~~-------~~~~l~~Lk~L~L~~~~~~~ 220 (565)
..++++.|+|... .....+|..+..+++|+.|+|++|. +.. |. .+..+++|+.|+|++|.+.
T Consensus 489 ~L~~L~~L~Ls~N------~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 489 NLKDLTDVELYNC------PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp GCTTCCEEEEESC------TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred cCCCCCEEECcCC------CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence 3468999999873 2345788889999999999999997 653 22 3345669999999999885
Q ss_pred HHHHH--HHhcCcCCceeEeeecCCCccc-ccccCcccceeEcccccccccchh--h-cCcc-ccEeeecCCCCCCCCce
Q 008452 221 QMVQK--LLHECHFLEDLNFFECLGLKLL-CISGAHKLKILTMETLSSELKGVK--I-VASS-LQQLTLQFPFEGQGTPV 293 (565)
Q Consensus 221 ~~l~~--ll~~cp~Le~L~L~~c~~l~~l-~i~~~~~L~~L~l~~c~~~l~~i~--~-~~p~-L~~L~l~~~~~~~~~~~ 293 (565)
.+.. .+..+++|+.|+|++|... .+ .+..+++|+.|++++|. +..+. + .+++ |+.|++++|.+. ..+
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~--l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp 635 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQ--IEEIPEDFCAFTDQVEGLGFSHNKLK--YIP 635 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSC--CSCCCTTSCEECTTCCEEECCSSCCC--SCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCc--cccchHHHhhccccCCEEECcCCCCC--cCc
Confidence 3444 6788999999999998754 33 44557899999999885 33332 3 6677 999999998863 344
Q ss_pred eeccccc--ccccccccccchH-HHHHH---hc--CCCCcceeecccccccccccc----cCCcccEEeecCCcChhhcc
Q 008452 294 VDIAVCP--NLKKFRAFNLLGQ-EFCTL---IS--KFPLLEDLSLFACSSFERITI----SSNQLKHLSLVHCASLKAIN 361 (565)
Q Consensus 294 ~~l~~~~--~L~~L~~~~i~~~-~l~~l---~~--~~~~L~~L~L~~C~~~~~l~~----~~~~L~~L~L~~C~~L~~L~ 361 (565)
..+...+ +|+.|++++..-. .++.+ +. ..++|+.|+|++|... .++. .+++|+.|+|+++ ++..+.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N-~L~~ip 713 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN-LMTSIP 713 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC-CCSCCC
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC-cCCccC
Confidence 4444443 3777776633211 11111 11 2347888888776322 3331 3467777777766 333222
Q ss_pred cc---C--------CCccceeEecCCC---Cce----ecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEE
Q 008452 362 ID---A--------PNLLSCNFWYNPF---PII----SINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDF 423 (565)
Q Consensus 362 i~---~--------p~L~~~~~~g~~~---~~~----~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~ 423 (565)
.. . ++|+.+.++++.. +.. .+.+|+.+++..|...+ .+. .+.++++|+.|.++.
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~-------~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPT-------QPLNSSQLKAFGIRH 785 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCC-------GGGGCTTCCEEECCC
T ss_pred hHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cch-------hhhcCCCCCEEECCC
Confidence 11 1 1566666666654 211 23467777776644332 222 456788888888875
Q ss_pred ec-----ccccccccccccccCCCCCccceeEEE
Q 008452 424 LS-----NQSLFNLYKFSRCCNSLPIQVETLRLR 452 (565)
Q Consensus 424 ~~-----~~~~~~~~~~~~c~~~~p~~l~~L~l~ 452 (565)
+. .....+|..|.. .++|+.|.|.
T Consensus 786 N~~ls~N~l~~~ip~~l~~-----L~~L~~L~Ls 814 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITT-----CPSLIQLQIG 814 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGG-----CSSCCEEECC
T ss_pred CCCcccccccccChHHHhc-----CCCCCEEECC
Confidence 32 111145555555 3357777764
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.30 E-value=4.2e-12 Score=145.19 Aligned_cols=278 Identities=16% Similarity=0.052 Sum_probs=165.1
Q ss_pred hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC---CCcccCCCcCcEEEcCCeeechHHHHHHHhc
Q 008452 153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ---PCYAMCFLSLKKLHLYGVYITEQMVQKLLHE 229 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~---~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~ 229 (565)
.+++++|+|+.. ......|..+..+++|++|+|++|.... +..+.++++|++|+|++|.+... ....+.+
T Consensus 23 p~~l~~LdLs~N------~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~ 95 (844)
T 3j0a_A 23 LNTTERLLLSFN------YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQG 95 (844)
T ss_dssp CTTCCEEEEESC------CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCS
T ss_pred CCCcCEEECCCC------cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccC
Confidence 368999999872 1223345667788999999999985443 55678899999999999987321 1234678
Q ss_pred CcCCceeEeeecCCCccc----ccccCcccceeEccccc-ccccc-hhh-cCccccEeeecCCCCCCCCceeecccc--c
Q 008452 230 CHFLEDLNFFECLGLKLL----CISGAHKLKILTMETLS-SELKG-VKI-VASSLQQLTLQFPFEGQGTPVVDIAVC--P 300 (565)
Q Consensus 230 cp~Le~L~L~~c~~l~~l----~i~~~~~L~~L~l~~c~-~~l~~-i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~--~ 300 (565)
+++|++|+|++|.....+ .+..+++|+.|++++|. .++.. -.+ .+++|++|+++++.+ ....+..++.+ +
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i-~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI-FLVCEHELEPLQGK 174 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC-CCCCSGGGHHHHHC
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC-CeeCHHHcccccCC
Confidence 999999999998654321 25568999999999985 22211 123 789999999999886 34344455555 6
Q ss_pred ccccccccccch-HHHHHHhcCCC------Ccceeeccccccccccc------cc-------------------------
Q 008452 301 NLKKFRAFNLLG-QEFCTLISKFP------LLEDLSLFACSSFERIT------IS------------------------- 342 (565)
Q Consensus 301 ~L~~L~~~~i~~-~~l~~l~~~~~------~L~~L~L~~C~~~~~l~------~~------------------------- 342 (565)
+|+.|++....- ...+..+..++ .|+.|++++|.....+. +.
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 777777653211 11111122333 38999998872211110 01
Q ss_pred ----------CCcccEEeecCCcChhhcc----ccCCCccceeEecCCCC------ceecccccceeeecccccCCCCcc
Q 008452 343 ----------SNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNPFP------IISINSQCSWNIHFNCQDDHDGGW 402 (565)
Q Consensus 343 ----------~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~~~------~~~~~sL~~~~l~~~~~~~~~~~~ 402 (565)
..+|+.|+++++. +..+. -..++|+.+.+.++... +....+|+.+++..|...+..+.
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~- 332 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS- 332 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC-
T ss_pred CChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH-
Confidence 1345555555442 11111 12356666666666541 22234677777765443322232
Q ss_pred cchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccceeEEE
Q 008452 403 FLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLR 452 (565)
Q Consensus 403 l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~ 452 (565)
.+.++++|++|+++.+.... ..+..|.. .++|+.|.+.
T Consensus 333 ------~~~~l~~L~~L~L~~N~i~~-~~~~~~~~-----l~~L~~L~Ls 370 (844)
T 3j0a_A 333 ------NFYGLPKVAYIDLQKNHIAI-IQDQTFKF-----LEKLQTLDLR 370 (844)
T ss_dssp ------SCSSCTTCCEEECCSCCCCC-CCSSCSCS-----CCCCCEEEEE
T ss_pred ------HhcCCCCCCEEECCCCCCCc-cChhhhcC-----CCCCCEEECC
Confidence 34566777777777666431 12233444 3457777775
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.30 E-value=7.4e-12 Score=138.56 Aligned_cols=295 Identities=9% Similarity=-0.047 Sum_probs=189.3
Q ss_pred hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCcc-CCC---CCcccCC------CcCcEEEcCCeeechHH
Q 008452 153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCK-LEQ---PCYAMCF------LSLKKLHLYGVYITEQM 222 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~-l~~---~~~~~~l------~~Lk~L~L~~~~~~~~~ 222 (565)
.+++++|++... .....+|..+.++++|++|+|++|. +.. |..+..+ ++|++|+|+++.++ .
T Consensus 248 l~~L~~L~L~~n------~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ 319 (636)
T 4eco_A 248 LKDLTDVEVYNC------PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--T 319 (636)
T ss_dssp CTTCCEEEEECC------TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--S
T ss_pred cCCCCEEEecCC------cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--c
Confidence 468999999873 2345788889999999999999997 753 3444444 99999999999985 3
Q ss_pred HHH--HHhcCcCCceeEeeecCCCccc-ccccCcccceeEcccccccccch--hh-cCcc-ccEeeecCCCCCCCCceee
Q 008452 223 VQK--LLHECHFLEDLNFFECLGLKLL-CISGAHKLKILTMETLSSELKGV--KI-VASS-LQQLTLQFPFEGQGTPVVD 295 (565)
Q Consensus 223 l~~--ll~~cp~Le~L~L~~c~~l~~l-~i~~~~~L~~L~l~~c~~~l~~i--~~-~~p~-L~~L~l~~~~~~~~~~~~~ 295 (565)
+.. .+..+++|++|++++|...+.+ .+..+++|+.|++++|. +..+ .+ .+++ |++|++++|.+. ..+..
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~--l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~ 395 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ--ITEIPANFCGFTEQVENLSFAHNKLK--YIPNI 395 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE--EEECCTTSEEECTTCCEEECCSSCCS--SCCSC
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc--cccccHhhhhhcccCcEEEccCCcCc--ccchh
Confidence 444 6788999999999999764333 34457899999999984 3333 23 6777 999999999873 34444
Q ss_pred ccccc--ccccccccccch-HHHHHHhc-------CCCCcceeecccccccccccc----cCCcccEEeecCCcChhhcc
Q 008452 296 IAVCP--NLKKFRAFNLLG-QEFCTLIS-------KFPLLEDLSLFACSSFERITI----SSNQLKHLSLVHCASLKAIN 361 (565)
Q Consensus 296 l~~~~--~L~~L~~~~i~~-~~l~~l~~-------~~~~L~~L~L~~C~~~~~l~~----~~~~L~~L~L~~C~~L~~L~ 361 (565)
+..++ +|+.|++++..- ...+..+. .+++|+.|+|++|... .++. ..++|+.|+++++. ++.+.
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~-l~~i~ 473 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNM-LTEIP 473 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSC-CSBCC
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCC-CCCcC
Confidence 55443 788877764321 22222233 5668888888886432 3332 35788888888763 33332
Q ss_pred ccC-----------CCccceeEecCCC---Cce----ecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEE
Q 008452 362 IDA-----------PNLLSCNFWYNPF---PII----SINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDF 423 (565)
Q Consensus 362 i~~-----------p~L~~~~~~g~~~---~~~----~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~ 423 (565)
... ++|+.+.++++.. +.. ...+|+.++++.|...+ .+. .+.++++|++|.++.
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~-------~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPT-------QPLNSSTLKGFGIRN 545 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCC-------GGGGCSSCCEEECCS
T ss_pred HHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cCh-------hhhcCCCCCEEECCC
Confidence 111 1677777777654 222 23478888887654333 233 466788999999864
Q ss_pred ec-----ccccccccccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHhhhcCCeeeecc
Q 008452 424 LS-----NQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLST 483 (565)
Q Consensus 424 ~~-----~~~~~~~~~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~ 483 (565)
+. .....+|..|.. .++|+.|.+... ........ ..++|+++.++.
T Consensus 546 N~~ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N-~l~~ip~~--------~~~~L~~L~Ls~ 596 (636)
T 4eco_A 546 QRDAQGNRTLREWPEGITL-----CPSLTQLQIGSN-DIRKVNEK--------ITPNISVLDIKD 596 (636)
T ss_dssp CBCTTCCBCCCCCCTTGGG-----CSSCCEEECCSS-CCCBCCSC--------CCTTCCEEECCS
T ss_pred CcccccCcccccChHHHhc-----CCCCCEEECCCC-cCCccCHh--------HhCcCCEEECcC
Confidence 32 111145666655 335777776432 01111110 127889998844
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=133.64 Aligned_cols=153 Identities=16% Similarity=0.087 Sum_probs=72.7
Q ss_pred ccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc---cccccCc
Q 008452 179 TVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL---LCISGAH 253 (565)
Q Consensus 179 ~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~---l~i~~~~ 253 (565)
.+..+++|++|+|++|.+.. +..+..+++|++|+|+++.++. .....+..+++|++|++++|..... -.+..++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 34455666666666665554 2345566666666666665521 1112345566666666666543211 1123356
Q ss_pred ccceeEccccc--ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHH-HhcCCCCcceee
Q 008452 254 KLKILTMETLS--SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCT-LISKFPLLEDLS 329 (565)
Q Consensus 254 ~L~~L~l~~c~--~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~-l~~~~~~L~~L~ 329 (565)
+|+.|++++|. ..+..-.+ .+++|++|+++++.+ ....+..++.+++|+.|++.+.....++. .+..+++|+.|+
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc-CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEE
Confidence 66666666653 11111122 455666666666554 22223334445555555444222122221 233345555555
Q ss_pred cccc
Q 008452 330 LFAC 333 (565)
Q Consensus 330 L~~C 333 (565)
+++|
T Consensus 229 L~~n 232 (353)
T 2z80_A 229 LRDT 232 (353)
T ss_dssp EESC
T ss_pred CCCC
Confidence 5543
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.29 E-value=4.7e-12 Score=139.07 Aligned_cols=245 Identities=14% Similarity=0.086 Sum_probs=155.4
Q ss_pred hCCcEEEEEEeCCCCcCcccccccCc-ccccCCCccEEEecCccCCC-CCc-ccCCCcCcEEEcCCeeechHHHHHHHhc
Q 008452 153 ENGVKELDFQILPDIKDYVHTYTLPQ-TVFSANFLTHLRLAGCKLEQ-PCY-AMCFLSLKKLHLYGVYITEQMVQKLLHE 229 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~-~~~-~~~l~~Lk~L~L~~~~~~~~~l~~ll~~ 229 (565)
.++++.|+|... ....+|+ .+..+++|++|+|++|.+.. ++. +..+++|++|+|++|.+..- ....+..
T Consensus 98 l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~ 169 (597)
T 3oja_B 98 AHTIQKLYMGFN-------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQA 169 (597)
T ss_dssp CTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTT
T ss_pred CCCCCEEECCCC-------cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-Chhhhhc
Confidence 358888888762 2334444 45678999999999999888 443 58999999999999988321 1234678
Q ss_pred CcCCceeEeeecCCCcccccccCcccceeEcccccccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccc
Q 008452 230 CHFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFN 309 (565)
Q Consensus 230 cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~ 309 (565)
+++|+.|+|++|.. +.+.+..+++|+.|+++++. +..+. ..++|++|+++++.+.. ......++|+.|++.+
T Consensus 170 l~~L~~L~L~~N~l-~~~~~~~l~~L~~L~l~~n~--l~~l~-~~~~L~~L~ls~n~l~~----~~~~~~~~L~~L~L~~ 241 (597)
T 3oja_B 170 TTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNL--LSTLA-IPIAVEELDASHNSINV----VRGPVNVELTILKLQH 241 (597)
T ss_dssp CTTCCEEECTTSCC-SBCCGGGCTTCSEEECCSSC--CSEEE-CCTTCSEEECCSSCCCE----EECSCCSCCCEEECCS
T ss_pred CCcCcEEECcCCCC-CCcChhhhhhhhhhhcccCc--ccccc-CCchhheeeccCCcccc----cccccCCCCCEEECCC
Confidence 99999999999864 44556667899999998874 33222 34578888888877511 1112235677666653
Q ss_pred cchHHHHHHhcCCCCcceeeccccccccccc---ccCCcccEEeecCCcChhhccc---cCCCccceeEecCCCC-----
Q 008452 310 LLGQEFCTLISKFPLLEDLSLFACSSFERIT---ISSNQLKHLSLVHCASLKAINI---DAPNLLSCNFWYNPFP----- 378 (565)
Q Consensus 310 i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L~i---~~p~L~~~~~~g~~~~----- 378 (565)
..-.. ...+..+++|+.|+|++|...+..+ ..+++|+.|+|+++ ++..+.. ..|+|+.+.++++...
T Consensus 242 n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~ 319 (597)
T 3oja_B 242 NNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERN 319 (597)
T ss_dssp SCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCCccCcc
Confidence 21111 1446677788888887764332222 23467777777765 2333321 2456777777776541
Q ss_pred ceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452 379 IISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLS 425 (565)
Q Consensus 379 ~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~ 425 (565)
+..+.+|+.+++..|..... .+..++.|++|+++.++
T Consensus 320 ~~~l~~L~~L~L~~N~l~~~----------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 320 QPQFDRLENLYLDHNSIVTL----------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp HHHHTTCSEEECCSSCCCCC----------CCCTTCCCSEEECCSSC
T ss_pred cccCCCCCEEECCCCCCCCc----------ChhhcCCCCEEEeeCCC
Confidence 11224777777765332111 14566788888887766
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.28 E-value=6.9e-12 Score=136.66 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=47.5
Q ss_pred hcCCCCcceeeccccccccccc---ccCCcccEEeecCCcChhhcc-ccCCCccceeEecCCC----Cceecccccceee
Q 008452 319 ISKFPLLEDLSLFACSSFERIT---ISSNQLKHLSLVHCASLKAIN-IDAPNLLSCNFWYNPF----PIISINSQCSWNI 390 (565)
Q Consensus 319 ~~~~~~L~~L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L~-i~~p~L~~~~~~g~~~----~~~~~~sL~~~~l 390 (565)
+..+++|+.|++.+|.. ..++ ... +|+.|++.+|. +..+. ...++|+.+.+.++.. +.....+|+.+++
T Consensus 278 ~~~l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l 354 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354 (570)
T ss_dssp TGGGTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEEC
T ss_pred hcCcCcccEEEecCccc-hhhhhhhccC-CccEEeeccCc-ccccCcccccccCEEeCcCCccccccccccCCCCCEEeC
Confidence 44566777777766532 1222 122 66666666653 22221 1235566666665543 1122245666666
Q ss_pred ecccccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452 391 HFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLS 425 (565)
Q Consensus 391 ~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~ 425 (565)
..+... + .......+.++++|++|+++.+.
T Consensus 355 ~~n~l~----~-~~~~~~~~~~~~~L~~L~l~~n~ 384 (570)
T 2z63_A 355 SRNGLS----F-KGCCSQSDFGTTSLKYLDLSFNG 384 (570)
T ss_dssp CSSCCB----E-EEEEEHHHHTCSCCCEEECCSCS
T ss_pred cCCccC----c-cccccccccccCccCEEECCCCc
Confidence 442211 0 11112345566666666666554
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.27 E-value=3.2e-11 Score=130.02 Aligned_cols=101 Identities=17% Similarity=-0.004 Sum_probs=61.7
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF 232 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~ 232 (565)
+++++|+++.. ......|..+..+++|++|+|++|.+.. +.. .+++|++|+|++|.++.-.+...+..+++
T Consensus 45 ~~L~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 45 SKLRILIISHN------RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp TTCCEEECCSS------CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred ccccEEecCCC------ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCc
Confidence 56777777652 1112224556667777777777777766 333 67777777777777633222234566777
Q ss_pred CceeEeeecCCCcccccccCccc--ceeEcccc
Q 008452 233 LEDLNFFECLGLKLLCISGAHKL--KILTMETL 263 (565)
Q Consensus 233 Le~L~L~~c~~l~~l~i~~~~~L--~~L~l~~c 263 (565)
|++|++++|.... ..+..+++| +.|++++|
T Consensus 117 L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 117 LKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCEEEEEESSCCG-GGGGGGTTSCEEEEEEEEC
T ss_pred ceEEEecCcccch-hhccccccceeeEEEeecc
Confidence 7777777775422 334445666 77777766
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.26 E-value=6e-12 Score=126.69 Aligned_cols=156 Identities=16% Similarity=0.088 Sum_probs=72.5
Q ss_pred ccCcccccCCCccEEEecC-ccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--cc
Q 008452 175 TLPQTVFSANFLTHLRLAG-CKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CI 249 (565)
Q Consensus 175 ~lp~~l~~~~~L~~L~L~~-c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i 249 (565)
.+|..+..+++|++|+|++ +.+.. +..+..+++|++|+|+++.++.. +...+..+++|++|++++|...+.+ .+
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence 4555555556666666653 44443 44455566666666665555211 1122445556666666555432111 23
Q ss_pred ccCcccceeEccccc-ccccchhh-cCc-cccEeeecCCCCCCCCceeecccccccccccccccc-hHHHHHHhcCCCCc
Q 008452 250 SGAHKLKILTMETLS-SELKGVKI-VAS-SLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL-GQEFCTLISKFPLL 325 (565)
Q Consensus 250 ~~~~~L~~L~l~~c~-~~l~~i~~-~~p-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~-~~~l~~l~~~~~~L 325 (565)
..+++|+.|++++|. .+...-.+ .++ +|++|++++|.+ ....+..++.++ |+.|++.+.. ....+..+..+++|
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l-~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL-TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE-EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee-eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC
Confidence 335556666665553 11111112 333 556666655554 222233334443 5555444211 11223344555666
Q ss_pred ceeecccc
Q 008452 326 EDLSLFAC 333 (565)
Q Consensus 326 ~~L~L~~C 333 (565)
+.|+|++|
T Consensus 224 ~~L~L~~N 231 (313)
T 1ogq_A 224 QKIHLAKN 231 (313)
T ss_dssp SEEECCSS
T ss_pred CEEECCCC
Confidence 66666654
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.26 E-value=2.9e-11 Score=130.31 Aligned_cols=140 Identities=16% Similarity=0.075 Sum_probs=78.4
Q ss_pred ccccccccccccccch-HHHHHHhcCCCCcceeecccccccc--ccc---ccCCcccEEeecCCcChhh-cc----ccCC
Q 008452 297 AVCPNLKKFRAFNLLG-QEFCTLISKFPLLEDLSLFACSSFE--RIT---ISSNQLKHLSLVHCASLKA-IN----IDAP 365 (565)
Q Consensus 297 ~~~~~L~~L~~~~i~~-~~l~~l~~~~~~L~~L~L~~C~~~~--~l~---~~~~~L~~L~L~~C~~L~~-L~----i~~p 365 (565)
+.+++|+.|++++..- +..+..+.++++|+.|++++|...+ .++ ...++|+.|+++++. +.. +. ...+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCc
Confidence 4566667666653221 2233445667777777777663221 221 234677777777664 221 22 1235
Q ss_pred CccceeEecCCCCc---eec-ccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccc-cccccC
Q 008452 366 NLLSCNFWYNPFPI---ISI-NSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYK-FSRCCN 440 (565)
Q Consensus 366 ~L~~~~~~g~~~~~---~~~-~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~-~~~c~~ 440 (565)
+|+.+.++++...- ..+ .+|+.+++..+... . +...+.++++|++|+++.+... .+|.. |..
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~-------ip~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~--- 466 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-S-------IPKQVVKLEALQELNVASNQLK--SVPDGIFDR--- 466 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-C-------CCGGGGGCTTCCEEECCSSCCC--CCCTTTTTT---
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-c-------cchhhhcCCCCCEEECCCCcCC--ccCHHHhcc---
Confidence 66777776665411 111 46777887654322 1 2223458899999999988765 45554 544
Q ss_pred CCCCccceeEEE
Q 008452 441 SLPIQVETLRLR 452 (565)
Q Consensus 441 ~~p~~l~~L~l~ 452 (565)
.++++.|.+.
T Consensus 467 --l~~L~~L~l~ 476 (520)
T 2z7x_B 467 --LTSLQKIWLH 476 (520)
T ss_dssp --CTTCCEEECC
T ss_pred --CCcccEEECc
Confidence 3457777765
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.25 E-value=1e-11 Score=131.09 Aligned_cols=148 Identities=16% Similarity=0.014 Sum_probs=71.2
Q ss_pred CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcccceeE
Q 008452 184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHKLKILT 259 (565)
Q Consensus 184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~ 259 (565)
++++.|+|++|.+.. +..+.++++|++|+|+++.+..-. ...+.++++|++|+|++|..... -.+..+++|+.|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 456666666666554 345556666666666666552110 12244566666666666533111 1233456666666
Q ss_pred ccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccc
Q 008452 260 METLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFAC 333 (565)
Q Consensus 260 l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C 333 (565)
++++. ..+....+ .+++|++|+++++..........+..+++|+.|++.+..-..++ .+..+++|+.|+|++|
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGN 217 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTS
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCC
Confidence 66653 11221122 45666666666543211111223445555555554422111111 1345556666666655
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.25 E-value=2.5e-11 Score=135.32 Aligned_cols=195 Identities=11% Similarity=-0.062 Sum_probs=95.7
Q ss_pred ccccEeeecCCCCCCCCceeeccccccccccccccc--chHHHHHHhcCCCCcceeecccccccccc---cccCCcccEE
Q 008452 275 SSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNL--LGQEFCTLISKFPLLEDLSLFACSSFERI---TISSNQLKHL 349 (565)
Q Consensus 275 p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i--~~~~l~~l~~~~~~L~~L~L~~C~~~~~l---~~~~~~L~~L 349 (565)
++|+.|++++|.+ ....+..++.+++|+.|++++. +.......+.++++|+.|++++|...... ...+++|+.|
T Consensus 381 ~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 381 SPLHILNLTKNKI-SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp SCCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred CcCceEECCCCCC-CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 4555565555554 2222334556677776666532 11111234566777777777776422111 1134667777
Q ss_pred eecCCc--Chhhcc---ccCCCccceeEecCCCC------ceecccccceeeecccccCCCCcccc-hHHHHHhhCCCCc
Q 008452 350 SLVHCA--SLKAIN---IDAPNLLSCNFWYNPFP------IISINSQCSWNIHFNCQDDHDGGWFL-NFKDFLRISKKIE 417 (565)
Q Consensus 350 ~L~~C~--~L~~L~---i~~p~L~~~~~~g~~~~------~~~~~sL~~~~l~~~~~~~~~~~~l~-~l~~~l~~l~~Le 417 (565)
.+.++. ++..+. -..++|+.+.++++... +....+|+.+++..|...+...+.+. ....++.++++|+
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence 766653 111110 13356777777666541 22234677777765432211000000 0011367788888
Q ss_pred eEEEEEeccccccccc-ccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHhhhcCCeeeecc
Q 008452 418 ELSIDFLSNQSLFNLY-KFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLST 483 (565)
Q Consensus 418 ~L~i~~~~~~~~~~~~-~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~ 483 (565)
+|+++.+... .+|. .|.. .++|+.|.+... ....... ..+..+++|+++.++.
T Consensus 540 ~L~L~~N~l~--~i~~~~~~~-----l~~L~~L~Ls~N-~l~~l~~-----~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 540 ILNLESNGFD--EIPVEVFKD-----LFELKIIDLGLN-NLNTLPA-----SVFNNQVSLKSLNLQK 593 (680)
T ss_dssp EEECCSSCCC--CCCTTTTTT-----CTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECTT
T ss_pred EEECCCCCCC--CCCHHHccc-----ccCcceeECCCC-CCCcCCH-----hHhCCCCCCCEEECCC
Confidence 8888877655 3343 3554 234777766421 0111000 0113457888888844
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.24 E-value=2.2e-11 Score=132.61 Aligned_cols=174 Identities=13% Similarity=0.056 Sum_probs=118.0
Q ss_pred ccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCc
Q 008452 175 TLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAH 253 (565)
Q Consensus 175 ~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~ 253 (565)
..|..+..+++|++|++++|.+.. +..+..+ +|++|+++++.+. .+.. ..+++|++|++.+|..........++
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG--QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS--SCCB--CBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc--ccCc--ccccccCEEeCcCCccccccccccCC
Confidence 345556667899999999988777 5666667 8999999988874 1111 46889999999988765554445678
Q ss_pred ccceeEccccc-cccc--chhh-cCccccEeeecCCCCCCCCceeecccccccccccccccc--hHHHHHHhcCCCCcce
Q 008452 254 KLKILTMETLS-SELK--GVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL--GQEFCTLISKFPLLED 327 (565)
Q Consensus 254 ~L~~L~l~~c~-~~l~--~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~--~~~l~~l~~~~~~L~~ 327 (565)
+|+.|++++|. .... ...+ .+++|++|++++|.+ ...+..+..+++|+.|++.+.. .......+.++++|+.
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE--EEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcc--ccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 99999998885 2221 1223 788999999998875 2233347788888888776422 2111234677888999
Q ss_pred eeccccccccccc---ccCCcccEEeecCCc
Q 008452 328 LSLFACSSFERIT---ISSNQLKHLSLVHCA 355 (565)
Q Consensus 328 L~L~~C~~~~~l~---~~~~~L~~L~L~~C~ 355 (565)
|++++|...+..+ ..+++|+.|++.+|.
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCc
Confidence 9998875433222 234677777777664
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.24 E-value=2.7e-11 Score=122.63 Aligned_cols=151 Identities=16% Similarity=0.069 Sum_probs=65.7
Q ss_pred CcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCc----cccccc
Q 008452 177 PQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLK----LLCISG 251 (565)
Q Consensus 177 p~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~----~l~i~~ 251 (565)
|..+..+++|++|+|++|.+.. +... +++|++|+++++.+..- ....+..+++|+.|++.+|.... .-.+..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~--~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCCccChhh--cccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence 3344445555555555554443 1111 24555555555554211 11234455555555555554311 112233
Q ss_pred CcccceeEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchH-HHHHHhcCCCCcceee
Q 008452 252 AHKLKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQ-EFCTLISKFPLLEDLS 329 (565)
Q Consensus 252 ~~~L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~-~l~~l~~~~~~L~~L~ 329 (565)
+++|+.|++++|. +..+.. ..++|++|+++++.+ ....+..++.+++|+.|++++..-. .....+..+++|+.|+
T Consensus 170 l~~L~~L~l~~n~--l~~l~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 246 (330)
T 1xku_A 170 MKKLSYIRIADTN--ITTIPQGLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246 (330)
T ss_dssp CTTCCEEECCSSC--CCSCCSSCCTTCSEEECTTSCC-CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred CCCcCEEECCCCc--cccCCccccccCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEE
Confidence 4555555555552 222221 124555555555554 2222233445555555554422111 1111234455555555
Q ss_pred cccc
Q 008452 330 LFAC 333 (565)
Q Consensus 330 L~~C 333 (565)
|++|
T Consensus 247 L~~N 250 (330)
T 1xku_A 247 LNNN 250 (330)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5554
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.24 E-value=1.8e-11 Score=129.76 Aligned_cols=190 Identities=14% Similarity=0.023 Sum_probs=109.8
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH 231 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp 231 (565)
++++.|+|... ......|..+..+++|++|+|++|.+.. +..+.++++|++|+|++|.++.- ....+..++
T Consensus 75 ~~l~~L~L~~n------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMEN------NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLS 147 (452)
T ss_dssp TTCSEEECCSS------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCT
T ss_pred CCccEEECcCC------cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccC
Confidence 46777776652 1112224445567778888887777766 45566777888888877776311 112345677
Q ss_pred CCceeEeeecCCCc--ccccccCcccceeEcccccccccch---hh-cCccccEeeecCCCCCCCCceeecccccccccc
Q 008452 232 FLEDLNFFECLGLK--LLCISGAHKLKILTMETLSSELKGV---KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKF 305 (565)
Q Consensus 232 ~Le~L~L~~c~~l~--~l~i~~~~~L~~L~l~~c~~~l~~i---~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 305 (565)
+|++|+|++|.... .-.+..+++|+.|++++|. .+..+ .+ .+++|++|++++|.+... ..+..+++|+.|
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L 223 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLTPLVGLEEL 223 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSC---CCCTTCTTCCEE
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCccccc---ccccccccccEE
Confidence 78888887775421 1123446777888877765 33333 23 567788888877775221 246667777777
Q ss_pred cccccch-HHHHHHhcCCCCcceeeccccccccccc---ccCCcccEEeecCC
Q 008452 306 RAFNLLG-QEFCTLISKFPLLEDLSLFACSSFERIT---ISSNQLKHLSLVHC 354 (565)
Q Consensus 306 ~~~~i~~-~~l~~l~~~~~~L~~L~L~~C~~~~~l~---~~~~~L~~L~L~~C 354 (565)
++++..- ...+..+.++++|+.|+|++|....... ...++|+.|+|+++
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 6653322 1223456677777777777753221111 12355666665554
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.24 E-value=2.1e-11 Score=123.51 Aligned_cols=123 Identities=14% Similarity=-0.023 Sum_probs=65.8
Q ss_pred CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcc
Q 008452 184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTME 261 (565)
Q Consensus 184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~ 261 (565)
++|+.|+|++|.+.. +..+..+++|++|+|+++.++.- ....+..+++|++|++++|.. +.+.....++|+.|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQL-KELPEKMPKTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCC-SBCCSSCCTTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEECCCCcC-CccChhhcccccEEECC
Confidence 466777777776665 23456677777777777666211 012245667777777776643 22222223567777776
Q ss_pred ccc-ccccchhh-cCccccEeeecCCCCCCC-Cceeeccccccccccccc
Q 008452 262 TLS-SELKGVKI-VASSLQQLTLQFPFEGQG-TPVVDIAVCPNLKKFRAF 308 (565)
Q Consensus 262 ~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~~~ 308 (565)
+|. ..+..-.+ .+++|++|+++++.+... .....++.+++|+.|++.
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 663 11111122 566677777766654111 122334555555555544
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.23 E-value=6e-12 Score=126.69 Aligned_cols=219 Identities=12% Similarity=0.007 Sum_probs=149.1
Q ss_pred CCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CC
Q 008452 123 FSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PC 200 (565)
Q Consensus 123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~ 200 (565)
..++.+.+....... ...+... ....+++++|++... + .....+|..+..+++|++|+|++|.+.. +.
T Consensus 50 ~~l~~L~L~~~~l~~---~~~~~~~--l~~l~~L~~L~L~~~-n----~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK---PYPIPSS--LANLPYLNFLYIGGI-N----NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCCCSS---CEECCGG--GGGCTTCSEEEEEEE-T----TEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCCCccC---CcccChh--HhCCCCCCeeeCCCC-C----cccccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 567787777664210 0011111 123468999999831 1 2344678888899999999999999875 66
Q ss_pred cccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCc-ccceeEccccc-ccccchhh-cCc
Q 008452 201 YAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAH-KLKILTMETLS-SELKGVKI-VAS 275 (565)
Q Consensus 201 ~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~-~L~~L~l~~c~-~~l~~i~~-~~p 275 (565)
.+..+++|++|+|+++.+... +...+..+++|++|++++|.....+ .+..++ +|+.|++++|. .+...-.+ .++
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred HHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 788999999999999988421 2334678999999999999764332 344455 99999999986 21222233 333
Q ss_pred cccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccccccc---cCCcccEEeec
Q 008452 276 SLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITI---SSNQLKHLSLV 352 (565)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~---~~~~L~~L~L~ 352 (565)
|++|++++|.+ ....+..++.+++|+.|++.+..-......+..+++|+.|+|++|...+.++. ..++|+.|+++
T Consensus 199 -L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 199 -LAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp -CSEEECCSSEE-EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred -ccEEECcCCcc-cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 99999999986 44455677889999988887432221122267789999999999854433332 34677777777
Q ss_pred CC
Q 008452 353 HC 354 (565)
Q Consensus 353 ~C 354 (565)
++
T Consensus 277 ~N 278 (313)
T 1ogq_A 277 FN 278 (313)
T ss_dssp SS
T ss_pred CC
Confidence 66
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.23 E-value=2.1e-11 Score=122.00 Aligned_cols=218 Identities=15% Similarity=0.082 Sum_probs=138.8
Q ss_pred ccccCcccccCCCccEEEecCccCCC-CC-cccCCCcCcEEEcCCeeechH-HHHHHHhcCcCCceeEeeecCCCcc-cc
Q 008452 173 TYTLPQTVFSANFLTHLRLAGCKLEQ-PC-YAMCFLSLKKLHLYGVYITEQ-MVQKLLHECHFLEDLNFFECLGLKL-LC 248 (565)
Q Consensus 173 ~~~lp~~l~~~~~L~~L~L~~c~l~~-~~-~~~~l~~Lk~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~l~~-l~ 248 (565)
...+|..+. ++|++|+|++|.+.. +. .+..+++|++|+|+++.++.. .....+..+++|++|+|++|..... -.
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence 345555443 589999999998877 33 367899999999999887321 1112244689999999998864221 12
Q ss_pred cccCcccceeEccccc-ccccc-hhh-cCccccEeeecCCCCCCCCceeeccccccccccccccc--chHHHHHHhcCCC
Q 008452 249 ISGAHKLKILTMETLS-SELKG-VKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNL--LGQEFCTLISKFP 323 (565)
Q Consensus 249 i~~~~~L~~L~l~~c~-~~l~~-i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i--~~~~l~~l~~~~~ 323 (565)
+..+++|+.|+++++. ..+.. -.+ .+++|++|+++++.+ ....+..++.+++|+.|++.+. ++..++..+..++
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 4457899999999885 22222 123 678999999998876 3333445677888888887643 3334556677888
Q ss_pred Ccceeeccccccccccc---ccCCcccEEeecCCcChhhcc---c-cCCCccceeEecCCCC------ceec-cccccee
Q 008452 324 LLEDLSLFACSSFERIT---ISSNQLKHLSLVHCASLKAIN---I-DAPNLLSCNFWYNPFP------IISI-NSQCSWN 389 (565)
Q Consensus 324 ~L~~L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L~---i-~~p~L~~~~~~g~~~~------~~~~-~sL~~~~ 389 (565)
+|+.|+|++|...+..+ ...++|+.|+++++. ++.+. + ..++|+.+.++++... +... .+|+.++
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 99999999874322211 234678888888764 22221 1 2356777777766541 1112 3566777
Q ss_pred eeccc
Q 008452 390 IHFNC 394 (565)
Q Consensus 390 l~~~~ 394 (565)
+..|.
T Consensus 255 L~~N~ 259 (306)
T 2z66_A 255 LTQND 259 (306)
T ss_dssp CTTCC
T ss_pred ccCCC
Confidence 75543
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.22 E-value=4.6e-11 Score=129.56 Aligned_cols=250 Identities=16% Similarity=0.095 Sum_probs=164.4
Q ss_pred CCCccEEEecCccCCC-----CCcccCCCcCcEEEcCCeeechHHHHHH---HhcCcCCceeEeeecCCCc---------
Q 008452 183 ANFLTHLRLAGCKLEQ-----PCYAMCFLSLKKLHLYGVYITEQMVQKL---LHECHFLEDLNFFECLGLK--------- 245 (565)
Q Consensus 183 ~~~L~~L~L~~c~l~~-----~~~~~~l~~Lk~L~L~~~~~~~~~l~~l---l~~cp~Le~L~L~~c~~l~--------- 245 (565)
+++|++|++++|.+.. .+....+++|+.|+++++.+++.....+ +..++.|+.|++.+|...+
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 274 (549)
T 2z81_A 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES 274 (549)
T ss_dssp TTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTT
T ss_pred cccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccch
Confidence 6788888888887765 1233467889999999998865554443 4568888888888875311
Q ss_pred ----------cccc------------------ccCcccceeEcccccccccchh----hcCccccEeeecCCCCCCCCc-
Q 008452 246 ----------LLCI------------------SGAHKLKILTMETLSSELKGVK----IVASSLQQLTLQFPFEGQGTP- 292 (565)
Q Consensus 246 ----------~l~i------------------~~~~~L~~L~l~~c~~~l~~i~----~~~p~L~~L~l~~~~~~~~~~- 292 (565)
.+.+ ...++|+.|++++|. +..+. ..+++|++|++++|.+ ....
T Consensus 275 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~--l~~ip~~~~~~l~~L~~L~Ls~N~l-~~~~~ 351 (549)
T 2z81_A 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK--VFLVPCSFSQHLKSLEFLDLSENLM-VEEYL 351 (549)
T ss_dssp TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC--CCCCCHHHHHHCTTCCEEECCSSCC-CHHHH
T ss_pred hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc--cccCCHHHHhcCccccEEEccCCcc-ccccc
Confidence 0100 012568888888774 33332 2689999999999986 2222
Q ss_pred --eeecccccccccccccccchHH---HHHHhcCCCCcceeecccccccccccc---cCCcccEEeecCCcChhhccccC
Q 008452 293 --VVDIAVCPNLKKFRAFNLLGQE---FCTLISKFPLLEDLSLFACSSFERITI---SSNQLKHLSLVHCASLKAINIDA 364 (565)
Q Consensus 293 --~~~l~~~~~L~~L~~~~i~~~~---l~~l~~~~~~L~~L~L~~C~~~~~l~~---~~~~L~~L~L~~C~~L~~L~i~~ 364 (565)
...++.+++|+.|++++..-.. ....+..+++|+.|+|++|. ++.++. ..++|+.|+++++. ++.+.-..
T Consensus 352 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~ 429 (549)
T 2z81_A 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCI 429 (549)
T ss_dssp HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC-CSCCCTTS
T ss_pred cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC-cccccchh
Confidence 2236788999999887433222 23568899999999999983 334443 34789999999885 44432222
Q ss_pred -CCccceeEecCCCCc--eecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCC
Q 008452 365 -PNLLSCNFWYNPFPI--ISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNS 441 (565)
Q Consensus 365 -p~L~~~~~~g~~~~~--~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~ 441 (565)
++|+.+.++++.... ....+|+.+++..|... ..+. ...+++|++|+++.+.... ..|..|..
T Consensus 430 ~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~--------~~~l~~L~~L~Ls~N~l~~-~~~~~~~~---- 495 (549)
T 2z81_A 430 PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD--------ASLFPVLLVMKISRNQLKS-VPDGIFDR---- 495 (549)
T ss_dssp CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC--------GGGCTTCCEEECCSSCCCC-CCTTGGGG----
T ss_pred cCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC--------cccCccCCEEecCCCccCC-cCHHHHhc----
Confidence 478888888876522 23458899999765432 2222 2468899999999887442 33445666
Q ss_pred CCCccceeEEE
Q 008452 442 LPIQVETLRLR 452 (565)
Q Consensus 442 ~p~~l~~L~l~ 452 (565)
.++++.|.+.
T Consensus 496 -l~~L~~L~l~ 505 (549)
T 2z81_A 496 -LTSLQKIWLH 505 (549)
T ss_dssp -CTTCCEEECC
T ss_pred -CcccCEEEec
Confidence 3457877775
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.22 E-value=2e-11 Score=128.93 Aligned_cols=188 Identities=13% Similarity=0.045 Sum_probs=127.8
Q ss_pred CCcEEEEEEeCCCCcCccccccc-CcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTL-PQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC 230 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c 230 (565)
.+++.|+|... ....+ +..+..+++|++|+|++|.+.. +..+.++++|++|+|++|.++.- ....+..+
T Consensus 64 ~~l~~L~L~~n-------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l 135 (440)
T 3zyj_A 64 TNTRLLNLHEN-------QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYL 135 (440)
T ss_dssp TTCSEEECCSC-------CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSC
T ss_pred CCCcEEEccCC-------cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhcc
Confidence 57788887662 22223 3456678899999999998876 45678899999999999887321 11245678
Q ss_pred cCCceeEeeecCCCc--ccccccCcccceeEcccccccccch---hh-cCccccEeeecCCCCCCCCceeeccccccccc
Q 008452 231 HFLEDLNFFECLGLK--LLCISGAHKLKILTMETLSSELKGV---KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKK 304 (565)
Q Consensus 231 p~Le~L~L~~c~~l~--~l~i~~~~~L~~L~l~~c~~~l~~i---~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 304 (565)
++|++|+|++|.... ...+..+++|+.|++++|. .+..+ .+ .+++|++|++++|.+... ..+..+++|+.
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~ 211 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREI---PNLTPLIKLDE 211 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSC---CCCTTCSSCCE
T ss_pred ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCccc---cccCCCcccCE
Confidence 999999999886522 1234557899999999875 33333 23 688999999999886322 24778888888
Q ss_pred ccccccch-HHHHHHhcCCCCcceeeccccccccccc----ccCCcccEEeecCC
Q 008452 305 FRAFNLLG-QEFCTLISKFPLLEDLSLFACSSFERIT----ISSNQLKHLSLVHC 354 (565)
Q Consensus 305 L~~~~i~~-~~l~~l~~~~~~L~~L~L~~C~~~~~l~----~~~~~L~~L~L~~C 354 (565)
|++++..- ...+..+.++++|+.|+|.++.. ..+. ..+++|+.|+|+++
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTSSTTCTTCCEEECTTS
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCce-eEEChhhhcCCCCCCEEECCCC
Confidence 88774322 22245677889999999998632 2221 13356666666665
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.22 E-value=1.2e-11 Score=131.04 Aligned_cols=199 Identities=16% Similarity=0.033 Sum_probs=127.7
Q ss_pred ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cc
Q 008452 173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LC 248 (565)
Q Consensus 173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~ 248 (565)
...+|..+. ++|++|+|++|.+.. +..+..+++|++|+|+++.++.- ....+.++++|++|+|++|..... -.
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 142 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGA 142 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTT
T ss_pred cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhh
Confidence 345565443 689999999998887 56788999999999999988321 113467899999999999864221 12
Q ss_pred cccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcc
Q 008452 249 ISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLE 326 (565)
Q Consensus 249 i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~ 326 (565)
+..+++|+.|++++|. ..+..-.+ .+++|++|+++++..........+..+++|+.|++++..-..++ .+..+++|+
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 221 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLE 221 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCC
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-ccccccccc
Confidence 4457999999999985 22222234 78999999999865322222234677888888877643222222 256778888
Q ss_pred eeeccccccccccc---ccCCcccEEeecCCcChhhcc----ccCCCccceeEecCC
Q 008452 327 DLSLFACSSFERIT---ISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNP 376 (565)
Q Consensus 327 ~L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~ 376 (565)
.|+|++|...+..+ ...++|+.|.++++. +..+. -..++|+.+.++++.
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCc
Confidence 88888864322211 234567777776653 22221 123455555555554
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.21 E-value=4e-11 Score=133.65 Aligned_cols=156 Identities=19% Similarity=0.090 Sum_probs=93.8
Q ss_pred cccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--ccc
Q 008452 174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCI 249 (565)
Q Consensus 174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i 249 (565)
..+|..+. ++|++|+|++|.+.. +..+..+++|++|+|+++.++.. ....+..+++|++|+|++|..... -.+
T Consensus 17 ~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 17 TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp SSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhh
Confidence 34554432 577888888877766 33467778888888887776221 123355678888888877754221 124
Q ss_pred ccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccccccc--chHHHHHH-hcCCCC
Q 008452 250 SGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNL--LGQEFCTL-ISKFPL 324 (565)
Q Consensus 250 ~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i--~~~~l~~l-~~~~~~ 324 (565)
..+++|++|++++|. ..+..-.+ .+++|++|++++|.+ ....+..++.+++|+.|++.+. +......+ ...+++
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 557788888888774 22221123 577888888887775 3334445667777777776532 22111111 224577
Q ss_pred cceeecccc
Q 008452 325 LEDLSLFAC 333 (565)
Q Consensus 325 L~~L~L~~C 333 (565)
|+.|++++|
T Consensus 173 L~~L~L~~n 181 (680)
T 1ziw_A 173 LKKLELSSN 181 (680)
T ss_dssp ESEEECTTC
T ss_pred ccEEECCCC
Confidence 888888776
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.21 E-value=4.1e-11 Score=120.29 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=122.1
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL 233 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L 233 (565)
+++++|++... ....+| .+..+++|++|+|++|.+...+.+..+++|++|+|+++.+.+- . -+..+++|
T Consensus 41 ~~L~~L~l~~~-------~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L 109 (308)
T 1h6u_A 41 DGITTLSAFGT-------GVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSI 109 (308)
T ss_dssp HTCCEEECTTS-------CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTC
T ss_pred CCcCEEEeeCC-------CccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCC
Confidence 58888887652 222344 4667889999999999888733388899999999999988332 1 36778999
Q ss_pred ceeEeeecCCCcccccccCcccceeEcccccccccchh-h-cCccccEeeecCCCCCCCCceeecccccccccccccccc
Q 008452 234 EDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVK-I-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL 311 (565)
Q Consensus 234 e~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~-~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~ 311 (565)
++|++++|.....-.+..+++|+.|++++|. +..+. + .+++|++|++++|.+.. ... ++.+++|+.|++.+..
T Consensus 110 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l~~~~~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ--ITNISPLAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp CEEECTTSCCCCCGGGTTCTTCCEEECCSSC--CCCCGGGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSC
T ss_pred CEEECCCCCCCCchhhcCCCCCCEEECCCCc--cCcCccccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCc
Confidence 9999998875333335667899999999885 22222 3 77889999999988632 211 7778888877776332
Q ss_pred hHHHHHHhcCCCCcceeeccccccccccc-ccCCcccEEeecCC
Q 008452 312 GQEFCTLISKFPLLEDLSLFACSSFERIT-ISSNQLKHLSLVHC 354 (565)
Q Consensus 312 ~~~l~~l~~~~~~L~~L~L~~C~~~~~l~-~~~~~L~~L~L~~C 354 (565)
-..+.. +..+++|+.|+|++|.-.+... ..+++|+.|+++++
T Consensus 185 l~~~~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 185 ISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CCCCGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred cCcChh-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence 222222 6678888888888763221111 12345555554443
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.21 E-value=5.7e-11 Score=119.21 Aligned_cols=185 Identities=17% Similarity=0.140 Sum_probs=133.6
Q ss_pred cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcc
Q 008452 182 SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTME 261 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~ 261 (565)
.+++|++|++++|.+...+.+..+++|++|+|+++.+.+- .. +..+++|++|++++|..-..-.+..+++|+.|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCC--hh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence 4579999999999988755788899999999999998332 12 78899999999999975332245568999999999
Q ss_pred cccccccch-hh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccccc
Q 008452 262 TLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERI 339 (565)
Q Consensus 262 ~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l 339 (565)
+|. +..+ .+ .+++|++|++++|.+.... .++.+++|+.|++++..-..+.. +..+++|+.|++++|.. ..+
T Consensus 116 ~n~--l~~~~~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~ 188 (308)
T 1h6u_A 116 STQ--ITDVTPLAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI-SDI 188 (308)
T ss_dssp TSC--CCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCC
T ss_pred CCC--CCCchhhcCCCCCCEEECCCCccCcCc---cccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc-CcC
Confidence 995 3323 24 7899999999999873222 27888999988887433222333 78899999999998742 222
Q ss_pred c--ccCCcccEEeecCCc--ChhhccccCCCccceeEecCCC
Q 008452 340 T--ISSNQLKHLSLVHCA--SLKAINIDAPNLLSCNFWYNPF 377 (565)
Q Consensus 340 ~--~~~~~L~~L~L~~C~--~L~~L~i~~p~L~~~~~~g~~~ 377 (565)
. ...++|+.|+++++. .+..+ ...++|+.+.++++..
T Consensus 189 ~~l~~l~~L~~L~L~~N~l~~~~~l-~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 189 SPLASLPNLIEVHLKNNQISDVSPL-ANTSNLFIVTLTNQTI 229 (308)
T ss_dssp GGGGGCTTCCEEECTTSCCCBCGGG-TTCTTCCEEEEEEEEE
T ss_pred hhhcCCCCCCEEEccCCccCccccc-cCCCCCCEEEccCCee
Confidence 1 245788888888774 22221 2346777777766643
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.21 E-value=8.6e-11 Score=128.89 Aligned_cols=233 Identities=14% Similarity=0.020 Sum_probs=147.7
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL 233 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L 233 (565)
+++++|++... ....+|. .+++|++|+|++|.+...+. .+++|++|+|++|.++. +. ...++|
T Consensus 61 ~~L~~L~L~~N-------~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~--l~---~~l~~L 123 (622)
T 3g06_A 61 AHITTLVIPDN-------NLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH--LP---ALPSGL 123 (622)
T ss_dssp TTCSEEEECSC-------CCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC--CC---CCCTTC
T ss_pred CCCcEEEecCC-------CCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC--CC---CCCCCc
Confidence 58889988762 2335565 45789999999998876222 78899999999988732 11 157889
Q ss_pred ceeEeeecCCCcccccccCcccceeEcccccccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchH
Q 008452 234 EDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQ 313 (565)
Q Consensus 234 e~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~ 313 (565)
+.|++.+|.. +.+... +++|+.|++++| .+..+.-..++|+.|++++|.+.. .+ ..+++|+.|++++..-.
T Consensus 124 ~~L~L~~N~l-~~lp~~-l~~L~~L~Ls~N--~l~~l~~~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 124 CKLWIFGNQL-TSLPVL-PPGLQELSVSDN--QLASLPALPSELCKLWAYNNQLTS--LP---MLPSGLQELSVSDNQLA 194 (622)
T ss_dssp CEEECCSSCC-SCCCCC-CTTCCEEECCSS--CCSCCCCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCS
T ss_pred CEEECCCCCC-CcCCCC-CCCCCEEECcCC--cCCCcCCccCCCCEEECCCCCCCC--Cc---ccCCCCcEEECCCCCCC
Confidence 9999988853 333322 488888888888 444443455778888888887622 22 44577777776643221
Q ss_pred HHHHHhcCCCCcceeecccccccccccccCCcccEEeecCCcChhhccccCCCccceeEecCCCCc-e-ecccccceeee
Q 008452 314 EFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPI-I-SINSQCSWNIH 391 (565)
Q Consensus 314 ~l~~l~~~~~~L~~L~L~~C~~~~~l~~~~~~L~~L~L~~C~~L~~L~i~~p~L~~~~~~g~~~~~-~-~~~sL~~~~l~ 391 (565)
. +....++|+.|++.+|. +..++...++|+.|+++++ +++.+....++|+.+.++++.... . ...+|+.+++.
T Consensus 195 ~---l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls 269 (622)
T 3g06_A 195 S---LPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVY 269 (622)
T ss_dssp C---CCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred C---CCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCC
Confidence 1 22345678888887753 3344444567888877766 455554444667777777765411 1 23467777776
Q ss_pred cccccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452 392 FNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLS 425 (565)
Q Consensus 392 ~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~ 425 (565)
.|... . +...+.++++|+.|+++.+.
T Consensus 270 ~N~L~-~-------lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 270 RNQLT-R-------LPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SSCCC-S-------CCGGGGGSCTTCEEECCSCC
T ss_pred CCCCC-c-------CCHHHhhccccCEEEecCCC
Confidence 54322 1 22246677888888887766
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.20 E-value=1.2e-11 Score=124.71 Aligned_cols=164 Identities=18% Similarity=0.112 Sum_probs=86.2
Q ss_pred CCcEEEEEEeCCCCcCccccccc-CcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTL-PQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF 232 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~ 232 (565)
+++++|++... ....+ |..+..+++|++|+|++|.+.....+..+++|++|+|++|.+++ +..++.
T Consensus 34 ~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~ 100 (317)
T 3o53_A 34 WNVKELDLSGN-------PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPS 100 (317)
T ss_dssp GGCSEEECTTS-------CCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTT
T ss_pred CCCCEEECcCC-------ccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCC
Confidence 36777776552 11222 23455667777777777776652226677777777777776632 123477
Q ss_pred CceeEeeecCCCcccccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeec-ccccccccccccc
Q 008452 233 LEDLNFFECLGLKLLCISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDI-AVCPNLKKFRAFN 309 (565)
Q Consensus 233 Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~~~~ 309 (565)
|++|++++|.. +.+....+++|+.|++++|. ..+....+ .+++|++|++++|.+ ....+..+ ..+++|+.|++++
T Consensus 101 L~~L~l~~n~l-~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 101 IETLHAANNNI-SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CCEEECCSSCC-SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC-CEEEGGGGGGGTTTCCEEECTT
T ss_pred cCEEECCCCcc-CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC-CcccHHHHhhccCcCCEEECCC
Confidence 77777777643 22333335677777777764 22222223 456777777777665 11111112 2445555555442
Q ss_pred cchHHHHHHhcCCCCcceeecccc
Q 008452 310 LLGQEFCTLISKFPLLEDLSLFAC 333 (565)
Q Consensus 310 i~~~~l~~l~~~~~~L~~L~L~~C 333 (565)
..-..++. ...+++|+.|+|++|
T Consensus 179 N~l~~~~~-~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 179 NFIYDVKG-QVVFAKLKTLDLSSN 201 (317)
T ss_dssp SCCCEEEC-CCCCTTCCEEECCSS
T ss_pred CcCccccc-ccccccCCEEECCCC
Confidence 21111111 113555555555554
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.20 E-value=1.4e-11 Score=122.03 Aligned_cols=190 Identities=18% Similarity=0.093 Sum_probs=120.8
Q ss_pred CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc---ccccCccccee
Q 008452 184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL---CISGAHKLKIL 258 (565)
Q Consensus 184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l---~i~~~~~L~~L 258 (565)
++|++|+|+++.+.. +..+..+++|++|+|+++.++.- ....+..+++|++|++++|..++.+ .+..+++|+.|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 578888888888776 34577888888888888877321 1223567888888888888644443 34457888888
Q ss_pred Eccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHH-HHhcCCCCcceeecccccc
Q 008452 259 TMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFC-TLISKFPLLEDLSLFACSS 335 (565)
Q Consensus 259 ~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~-~l~~~~~~L~~L~L~~C~~ 335 (565)
++++|. ..+..-.+ .+++|++|+++++.+ .......++.+++|+.|++.+..-..++ ..+.++++|+.|+|++|..
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 888874 22212223 578888888888876 3333334677888888877643222222 2466788899999988743
Q ss_pred ccccc---ccCCcccEEeecCCcChhhcc----ccCCCccceeEecCC
Q 008452 336 FERIT---ISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNP 376 (565)
Q Consensus 336 ~~~l~---~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~ 376 (565)
.+..+ ..+++|+.|+++++. ++.+. -..++|+.+.+++++
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 22212 134678888877763 33222 123566666666654
No 61
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.18 E-value=1.5e-11 Score=127.43 Aligned_cols=59 Identities=10% Similarity=-0.007 Sum_probs=26.5
Q ss_pred ccccEeeecCCCCCCCCce---eecccccccccccccc--cchHHH---HH-HhcCCCCcceeecccc
Q 008452 275 SSLQQLTLQFPFEGQGTPV---VDIAVCPNLKKFRAFN--LLGQEF---CT-LISKFPLLEDLSLFAC 333 (565)
Q Consensus 275 p~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~~~~--i~~~~l---~~-l~~~~~~L~~L~L~~C 333 (565)
++|++|++++|.+.....+ ..+..+++|+.|++.+ +++..+ .. .+..+++|+.|+|++|
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n 226 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC
Confidence 5566666655554211211 1233444555444442 333321 11 3445566666666654
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.18 E-value=3.5e-11 Score=119.21 Aligned_cols=191 Identities=16% Similarity=0.077 Sum_probs=113.0
Q ss_pred CCcEEEEEEeCCCCcCcccccccC-cccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCee-echHHHHHHHhc
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLP-QTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVY-ITEQMVQKLLHE 229 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~-~~~~~l~~ll~~ 229 (565)
+++++|++... ....+| ..+..+++|++|+|++|.+.. +..+..+++|++|+|+++. ++.- ....+..
T Consensus 32 ~~l~~L~l~~n-------~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~ 103 (285)
T 1ozn_A 32 AASQRIFLHGN-------RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHG 103 (285)
T ss_dssp TTCSEEECTTS-------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTT
T ss_pred CCceEEEeeCC-------cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcC
Confidence 57777777652 222333 345567788888888877765 4566777888888888775 4211 1223556
Q ss_pred CcCCceeEeeecCCCcc--cccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccc
Q 008452 230 CHFLEDLNFFECLGLKL--LCISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKF 305 (565)
Q Consensus 230 cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 305 (565)
+++|++|++++|..... -.+..+++|+.|++++|. ..+..-.+ .+++|++|+++++.+ .......+..+++|+.|
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRL 182 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCHHHhcCccccCEE
Confidence 78888888887764322 124456788888888774 22221123 577888888888765 22222246677777777
Q ss_pred cccccch-HHHHHHhcCCCCcceeeccccccccccc----ccCCcccEEeecCC
Q 008452 306 RAFNLLG-QEFCTLISKFPLLEDLSLFACSSFERIT----ISSNQLKHLSLVHC 354 (565)
Q Consensus 306 ~~~~i~~-~~l~~l~~~~~~L~~L~L~~C~~~~~l~----~~~~~L~~L~L~~C 354 (565)
++.+..- ...+..+..+++|+.|+|++|... .+. ...++|+.|++++.
T Consensus 183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSS
T ss_pred ECCCCcccccCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCC
Confidence 7663321 122445567778888888876322 221 12355666665554
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.18 E-value=2.3e-11 Score=130.08 Aligned_cols=102 Identities=19% Similarity=0.121 Sum_probs=50.5
Q ss_pred ccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCccccee
Q 008452 179 TVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKIL 258 (565)
Q Consensus 179 ~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L 258 (565)
.+..+++|++|+|++|.+.....+..+++|++|+|++|.+++ +...|.|+.|++++|.... +....+++|+.|
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~~N~l~~-~~~~~l~~L~~L 125 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISR-VSCSRGQGKKNI 125 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCCCC-EEECCCSSCEEE
T ss_pred HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEECcCCcCCC-CCccccCCCCEE
Confidence 444556666666666655541125556666666666665521 1123556666666554322 222234556666
Q ss_pred Eccccc-ccccchhh-cCccccEeeecCCCC
Q 008452 259 TMETLS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 259 ~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
++++|. .++....+ .+++|++|++++|.+
T Consensus 126 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp ECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred ECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence 666553 22222222 455566666655554
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.17 E-value=1.7e-10 Score=122.21 Aligned_cols=178 Identities=17% Similarity=0.052 Sum_probs=98.0
Q ss_pred CCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcccc
Q 008452 184 NFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETL 263 (565)
Q Consensus 184 ~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c 263 (565)
++|++|++++|.+...+.+..+++|++|+++++.++. +. ...++|++|++++|....--.+..+++|+.|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 4677777777766663356677777777777776621 11 123467777777765422113445677777777776
Q ss_pred cccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccccccccC
Q 008452 264 SSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITISS 343 (565)
Q Consensus 264 ~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~~ 343 (565)
. +..+....++|++|++++|.+. ..+ .++.+++|+.|++.+..-..+ ....++|+.|++++|. +..++...
T Consensus 206 ~--l~~l~~~~~~L~~L~l~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~l---~~~~~~L~~L~l~~N~-l~~l~~~~ 276 (454)
T 1jl5_A 206 S--LKKLPDLPLSLESIVAGNNILE--ELP-ELQNLPFLTTIYADNNLLKTL---PDLPPSLEALNVRDNY-LTDLPELP 276 (454)
T ss_dssp C--CSSCCCCCTTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSSC---CSCCTTCCEEECCSSC-CSCCCCCC
T ss_pred c--CCcCCCCcCcccEEECcCCcCC--ccc-ccCCCCCCCEEECCCCcCCcc---cccccccCEEECCCCc-ccccCccc
Confidence 3 3333333457777777777652 222 366777777776653221111 1234677777777653 22343334
Q ss_pred CcccEEeecCCcChhhccccCCCccceeEecCC
Q 008452 344 NQLKHLSLVHCASLKAINIDAPNLLSCNFWYNP 376 (565)
Q Consensus 344 ~~L~~L~L~~C~~L~~L~i~~p~L~~~~~~g~~ 376 (565)
.+|+.|+++++. ++.+.--.++|+.+.++++.
T Consensus 277 ~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~ 308 (454)
T 1jl5_A 277 QSLTFLDVSENI-FSGLSELPPNLYYLNASSNE 308 (454)
T ss_dssp TTCCEEECCSSC-CSEESCCCTTCCEEECCSSC
T ss_pred CcCCEEECcCCc-cCcccCcCCcCCEEECcCCc
Confidence 567777766652 22221112345555555443
No 65
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.17 E-value=1.7e-10 Score=125.59 Aligned_cols=140 Identities=13% Similarity=0.042 Sum_probs=86.8
Q ss_pred ccccccccccccccc-hHHHHHHhcCCCCcceeeccccccc--cccc---ccCCcccEEeecCCcChhh-cc----ccCC
Q 008452 297 AVCPNLKKFRAFNLL-GQEFCTLISKFPLLEDLSLFACSSF--ERIT---ISSNQLKHLSLVHCASLKA-IN----IDAP 365 (565)
Q Consensus 297 ~~~~~L~~L~~~~i~-~~~l~~l~~~~~~L~~L~L~~C~~~--~~l~---~~~~~L~~L~L~~C~~L~~-L~----i~~p 365 (565)
+.+++|+.|++.+.. .+..+..+.++++|+.|++++|.-- ..++ ...++|+.|+++++. +.. +. ...+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcc
Confidence 566777777776322 1234455678889999999887322 1222 245788888888774 222 22 1336
Q ss_pred CccceeEecCCCC---ceec-ccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccc-cccccC
Q 008452 366 NLLSCNFWYNPFP---IISI-NSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYK-FSRCCN 440 (565)
Q Consensus 366 ~L~~~~~~g~~~~---~~~~-~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~-~~~c~~ 440 (565)
+|+.+.++++... +..+ .+|+.++++.|... . +...+.++++|++|+++.+... .+|.. |..
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~-------ip~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~--- 495 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-S-------IPKDVTHLQALQELNVASNQLK--SVPDGVFDR--- 495 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-C-------CCTTTTSSCCCSEEECCSSCCC--CCCTTSTTT---
T ss_pred cCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-c-------cChhhcCCCCCCEEECCCCCCC--CCCHHHHhc---
Confidence 7888888877652 1122 57888888764322 1 2223448899999999988866 45554 555
Q ss_pred CCCCccceeEEE
Q 008452 441 SLPIQVETLRLR 452 (565)
Q Consensus 441 ~~p~~l~~L~l~ 452 (565)
.++++.|.+.
T Consensus 496 --l~~L~~L~l~ 505 (562)
T 3a79_B 496 --LTSLQYIWLH 505 (562)
T ss_dssp --CTTCCCEECC
T ss_pred --CCCCCEEEec
Confidence 3458888775
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.16 E-value=5.9e-11 Score=120.33 Aligned_cols=153 Identities=12% Similarity=-0.064 Sum_probs=84.7
Q ss_pred cccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccccccc
Q 008452 174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISG 251 (565)
Q Consensus 174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~ 251 (565)
..+|..+. ++|+.|+|++|.+.. +..+..+++|++|+|+++.++.- ....+..+++|++|++++|.. +.+....
T Consensus 46 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~l~~~~ 121 (332)
T 2ft3_A 46 KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHL-VEIPPNL 121 (332)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCC-CSCCSSC
T ss_pred cccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcC-CccCccc
Confidence 34555443 577888888877766 34567788888888887776321 112346678888888877754 2222222
Q ss_pred CcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCC-CceeecccccccccccccccchHHHHHHhcCCCCccee
Q 008452 252 AHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQG-TPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDL 328 (565)
Q Consensus 252 ~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L 328 (565)
.++|+.|+++++. ..+..-.+ .+++|++|+++++.+... ..+..++.+ +|+.|++.+..-..++.. ..++|+.|
T Consensus 122 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~--~~~~L~~L 198 (332)
T 2ft3_A 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD--LPETLNEL 198 (332)
T ss_dssp CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS--SCSSCSCC
T ss_pred cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc--ccCCCCEE
Confidence 3677888887774 22221123 567788888777765211 122233344 566555543221111111 12466666
Q ss_pred ecccc
Q 008452 329 SLFAC 333 (565)
Q Consensus 329 ~L~~C 333 (565)
+++++
T Consensus 199 ~l~~n 203 (332)
T 2ft3_A 199 HLDHN 203 (332)
T ss_dssp BCCSS
T ss_pred ECCCC
Confidence 66664
No 67
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.15 E-value=8.2e-11 Score=119.23 Aligned_cols=16 Identities=6% Similarity=-0.022 Sum_probs=9.7
Q ss_pred HHhhCCCCceEEEEEe
Q 008452 409 FLRISKKIEELSIDFL 424 (565)
Q Consensus 409 ~l~~l~~Le~L~i~~~ 424 (565)
.+..++.|+.+.+..+
T Consensus 315 ~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 315 TFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGTTBCCSTTEEC---
T ss_pred cccccchhhhhhcccc
Confidence 5667788888877543
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.15 E-value=2.3e-10 Score=124.59 Aligned_cols=121 Identities=13% Similarity=0.033 Sum_probs=72.6
Q ss_pred CCcEEEEEEeCCCCcCcccccccC-cccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLP-QTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC 230 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c 230 (565)
+++++|+++.. ....++ ..+..+++|++|+|++|.+.. +..+.++++|++|+|++|.++. +... .+
T Consensus 52 ~~L~~L~Ls~N-------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l 120 (562)
T 3a79_B 52 PRTKALSLSQN-------SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN--ISCC--PM 120 (562)
T ss_dssp TTCCEEECCSS-------CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE--ECSC--CC
T ss_pred CCcCEEECCCC-------CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc--cCcc--cc
Confidence 56777777652 222333 355667777777777777766 4456677777777777777631 1111 57
Q ss_pred cCCceeEeeecCCCc-c--cccccCcccceeEcccccccccchhh-cCccc--cEeeecCCCC
Q 008452 231 HFLEDLNFFECLGLK-L--LCISGAHKLKILTMETLSSELKGVKI-VASSL--QQLTLQFPFE 287 (565)
Q Consensus 231 p~Le~L~L~~c~~l~-~--l~i~~~~~L~~L~l~~c~~~l~~i~~-~~p~L--~~L~l~~~~~ 287 (565)
++|++|++++|...+ . -.+..+++|+.|+++++. +....+ .+++| +.|+++++.+
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK--FRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB--CCTTTTGGGTTSCEEEEEEEESSC
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCc--cccCchhhhhhceeeEEEeecccc
Confidence 777777777776422 1 134456777777777763 332333 34444 7777766653
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.13 E-value=5e-11 Score=120.13 Aligned_cols=227 Identities=16% Similarity=0.111 Sum_probs=161.3
Q ss_pred cCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeE
Q 008452 182 SANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILT 259 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~ 259 (565)
.+++|++|+|++|.+.. +..+..+++|++|+|++|.+.+.. . +..+++|++|++++|.. +.+ ..+++|+.|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~l-~~l--~~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYV-QEL--LVGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSEE-EEE--EECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCcc-ccc--cCCCCcCEEE
Confidence 45799999999999887 346789999999999999883211 1 67899999999999853 322 2358999999
Q ss_pred cccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccc--cchHHHHHHhcCCCCcceeeccccccc
Q 008452 260 METLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFN--LLGQEFCTLISKFPLLEDLSLFACSSF 336 (565)
Q Consensus 260 l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~--i~~~~l~~l~~~~~~L~~L~L~~C~~~ 336 (565)
+++|. +..+.. ..++|++|++++|.+ ....+..++.+++|+.|++++ ++......+...+++|+.|+|++|.-
T Consensus 106 l~~n~--l~~~~~~~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l- 181 (317)
T 3o53_A 106 AANNN--ISRVSCSRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI- 181 (317)
T ss_dssp CCSSC--CSEEEECCCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-
T ss_pred CCCCc--cCCcCccccCCCCEEECCCCCC-CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-
Confidence 99984 444433 578999999999987 444556788899999988874 33333344556789999999999742
Q ss_pred cccc--ccCCcccEEeecCCcChhhcc---ccCCCccceeEecCCCC-----ceecccccceeeecccccCCCCcccchH
Q 008452 337 ERIT--ISSNQLKHLSLVHCASLKAIN---IDAPNLLSCNFWYNPFP-----IISINSQCSWNIHFNCQDDHDGGWFLNF 406 (565)
Q Consensus 337 ~~l~--~~~~~L~~L~L~~C~~L~~L~---i~~p~L~~~~~~g~~~~-----~~~~~sL~~~~l~~~~~~~~~~~~l~~l 406 (565)
..+. ...++|+.|+++++. ++.+. ...++|+.+.++++... +....+|+.+++..|.. . -..+
T Consensus 182 ~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~-----~-~~~~ 254 (317)
T 3o53_A 182 YDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF-----H-CGTL 254 (317)
T ss_dssp CEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC-----B-HHHH
T ss_pred cccccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc-----c-CcCH
Confidence 2222 236789999998873 33221 24467888888887652 22335788888865321 1 1246
Q ss_pred HHHHhhCCCCceEEEEEec
Q 008452 407 KDFLRISKKIEELSIDFLS 425 (565)
Q Consensus 407 ~~~l~~l~~Le~L~i~~~~ 425 (565)
..++..++.|+.|.+..+.
T Consensus 255 ~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 255 RDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhccccceEEECCCch
Confidence 6788888989888876444
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.11 E-value=3.3e-11 Score=120.58 Aligned_cols=214 Identities=17% Similarity=0.029 Sum_probs=114.4
Q ss_pred CCcEEEEEEeCCCCcCcccccccCccc-ccCCCccEEEecCccCCC----CCcccCCCcCcEEEcCCeeechHHHHHHHh
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTV-FSANFLTHLRLAGCKLEQ----PCYAMCFLSLKKLHLYGVYITEQMVQKLLH 228 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~c~l~~----~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~ 228 (565)
+++++|++... ....+|... ..+++|++|+|++|.+.. +..+..+++|++|+|+++.+.. +...+.
T Consensus 28 ~~l~~L~L~~n-------~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELESN-------KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFL 98 (306)
T ss_dssp TTCCEEECCSS-------CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEE
T ss_pred CCCCEEECCCC-------ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcC
Confidence 35666666541 223455443 456677777777766553 2334456777777777766521 111144
Q ss_pred cCcCCceeEeeecCCCcc---cccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccc
Q 008452 229 ECHFLEDLNFFECLGLKL---LCISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLK 303 (565)
Q Consensus 229 ~cp~Le~L~L~~c~~l~~---l~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 303 (565)
.+++|++|++++|..... -.+..+++|+.|++++|. .....-.+ .+++|++|+++++.+.....+..++.+++|+
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 567777777776643211 123345677777777664 11111112 4567777777776652212344566667777
Q ss_pred cccccccchH-HHHHHhcCCCCcceeecccccccccc--c-ccCCcccEEeecCCcChhhcc----ccC-CCccceeEec
Q 008452 304 KFRAFNLLGQ-EFCTLISKFPLLEDLSLFACSSFERI--T-ISSNQLKHLSLVHCASLKAIN----IDA-PNLLSCNFWY 374 (565)
Q Consensus 304 ~L~~~~i~~~-~l~~l~~~~~~L~~L~L~~C~~~~~l--~-~~~~~L~~L~L~~C~~L~~L~----i~~-p~L~~~~~~g 374 (565)
.|++++..-. ..+..+..+++|+.|+|++|...+.. . ...++|+.|+++++. +.... ... ++|+.+.++|
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTT
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccC
Confidence 6666532211 11334566777777777776322111 1 134677777777763 22211 122 3677777777
Q ss_pred CCC
Q 008452 375 NPF 377 (565)
Q Consensus 375 ~~~ 377 (565)
++.
T Consensus 258 N~~ 260 (306)
T 2z66_A 258 NDF 260 (306)
T ss_dssp CCE
T ss_pred CCe
Confidence 653
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.11 E-value=8.4e-11 Score=118.02 Aligned_cols=174 Identities=18% Similarity=0.144 Sum_probs=106.9
Q ss_pred CCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCccc--ccCCCccEEEecCccCCC-C
Q 008452 123 FSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTV--FSANFLTHLRLAGCKLEQ-P 199 (565)
Q Consensus 123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~c~l~~-~ 199 (565)
..++++.+.... .....+..........++++|++... ......|..+ ..+++|++|+|++|.+.. .
T Consensus 64 ~~l~~l~l~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~n------~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 64 LRVRRLTVGAAQ----VPAQLLVGALRVLAYSRLKELTLEDL------KITGTMPPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp CCCCEEEECSCC----CBHHHHHHHHHHHHHSCCCEEEEESC------CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred cceeEEEEeCCc----CCHHHHHHHHHhcccCceeEEEeeCC------EeccchhhhhhhccCCCCCEEEeecccccchh
Confidence 345665554332 22445555555555577999998763 1223445555 567889999999988775 1
Q ss_pred -----CcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc------cccccCcccceeEccccc-ccc
Q 008452 200 -----CYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL------LCISGAHKLKILTMETLS-SEL 267 (565)
Q Consensus 200 -----~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~------l~i~~~~~L~~L~l~~c~-~~l 267 (565)
..+..+++|++|+|++|.+... ....++.+++|++|+|++|...+. ..+..+++|+.|++++|. ..+
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l 212 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP 212 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch
Confidence 1224688899999988887221 123356788899999988875432 122356888889988884 211
Q ss_pred cch----hhcCccccEeeecCCCCCCCCceeecccc---ccccccccc
Q 008452 268 KGV----KIVASSLQQLTLQFPFEGQGTPVVDIAVC---PNLKKFRAF 308 (565)
Q Consensus 268 ~~i----~~~~p~L~~L~l~~~~~~~~~~~~~l~~~---~~L~~L~~~ 308 (565)
..+ .-.+++|++|++++|.+ ....+..+..+ ++|+.|+++
T Consensus 213 ~~~~~~l~~~l~~L~~L~Ls~N~l-~~~~p~~~~~~~~~~~L~~L~Ls 259 (310)
T 4glp_A 213 TGVCAALAAAGVQPHSLDLSHNSL-RATVNPSAPRCMWSSALNSLNLS 259 (310)
T ss_dssp HHHHHHHHHHTCCCSSEECTTSCC-CCCCCSCCSSCCCCTTCCCEECC
T ss_pred HHHHHHHHhcCCCCCEEECCCCCC-CccchhhHHhccCcCcCCEEECC
Confidence 221 12568888888888886 33223334443 455555554
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.11 E-value=5.8e-11 Score=127.03 Aligned_cols=224 Identities=16% Similarity=0.114 Sum_probs=153.1
Q ss_pred CCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEc
Q 008452 183 ANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTM 260 (565)
Q Consensus 183 ~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l 260 (565)
+++|++|+|++|.+.. +..+..+++|++|+|++|.+++.. . +..+++|++|+|++|.. +.+. ..++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l-~~l~--~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYV-QELL--VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSEE-EEEE--ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCcC-CCCC--CCCCcCEEEC
Confidence 4589999999998887 457789999999999999883211 1 77899999999999853 3322 3489999999
Q ss_pred ccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccc--cchHHHHHHhcCCCCcceeecccccccc
Q 008452 261 ETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFN--LLGQEFCTLISKFPLLEDLSLFACSSFE 337 (565)
Q Consensus 261 ~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~--i~~~~l~~l~~~~~~L~~L~L~~C~~~~ 337 (565)
++|. +..+.. ..++|++|++++|.+ ....+..++.+++|+.|++++ ++......+...+++|+.|+|++|...+
T Consensus 107 ~~N~--l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNN--ISRVSCSRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSC--CCCEEECCCSSCEEEECCSSCC-CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCc--CCCCCccccCCCCEEECCCCCC-CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 9984 333333 568999999999987 455566788899999888874 3333333445578999999999974322
Q ss_pred ccc-ccCCcccEEeecCCcChhhcc---ccCCCccceeEecCCCC-----ceecccccceeeecccccCCCCcccchHHH
Q 008452 338 RIT-ISSNQLKHLSLVHCASLKAIN---IDAPNLLSCNFWYNPFP-----IISINSQCSWNIHFNCQDDHDGGWFLNFKD 408 (565)
Q Consensus 338 ~l~-~~~~~L~~L~L~~C~~L~~L~---i~~p~L~~~~~~g~~~~-----~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~ 408 (565)
... ...++|+.|+|+++. +..+. ...++|+.+.++++... +....+|+.+++..|.. . -..+..
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l-----~-c~~~~~ 256 (487)
T 3oja_A 184 VKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF-----H-CGTLRD 256 (487)
T ss_dssp EECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB-----C-HHHHHH
T ss_pred ccccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC-----c-CcchHH
Confidence 111 235789999988873 32221 23467788888777642 22234677777754321 0 123556
Q ss_pred HHhhCCCCceEEEE
Q 008452 409 FLRISKKIEELSID 422 (565)
Q Consensus 409 ~l~~l~~Le~L~i~ 422 (565)
++..++.|+.+.+.
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 67777777766653
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.11 E-value=1.3e-10 Score=114.10 Aligned_cols=156 Identities=19% Similarity=0.112 Sum_probs=87.8
Q ss_pred cccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--ccc
Q 008452 174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCI 249 (565)
Q Consensus 174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i 249 (565)
..+|..+. ++|++|+|++|.+.. +..+..+++|++|+|+++.++. .....+..+++|++|+|++|..... -.+
T Consensus 29 ~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 105 (270)
T 2o6q_A 29 TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVF 105 (270)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHc
Confidence 34554432 578888888887776 3356778888888888877631 1112345678888888887754221 123
Q ss_pred ccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHH-HHHhcCCCCcc
Q 008452 250 SGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEF-CTLISKFPLLE 326 (565)
Q Consensus 250 ~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l-~~l~~~~~~L~ 326 (565)
..+++|+.|+++++. ..+..-.+ .+++|++|+++++.+ .......++.+++|+.|++.+..-..+ ...+.++++|+
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence 446778888887774 22222123 567788888877765 222222345555555555442211111 11234455555
Q ss_pred eeecccc
Q 008452 327 DLSLFAC 333 (565)
Q Consensus 327 ~L~L~~C 333 (565)
.|+|++|
T Consensus 185 ~L~L~~N 191 (270)
T 2o6q_A 185 TLKLDNN 191 (270)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 5555554
No 74
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.10 E-value=6.2e-11 Score=121.24 Aligned_cols=151 Identities=17% Similarity=0.103 Sum_probs=64.2
Q ss_pred ccCCCccEEEecCccCCC-CC--cccCCCcCcEEEcCCee-echHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcc
Q 008452 181 FSANFLTHLRLAGCKLEQ-PC--YAMCFLSLKKLHLYGVY-ITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHK 254 (565)
Q Consensus 181 ~~~~~L~~L~L~~c~l~~-~~--~~~~l~~Lk~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~ 254 (565)
..+++|++|+|++|.+.. +. .+..+++|++|+|+++. ++. .....+..+++|++|++++|..... -.+..+++
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc
Confidence 344555555555555444 22 34455555555555542 211 0011234455555555555543211 12233455
Q ss_pred cceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceee---ccccccccccccc--ccch---HHHHHHhcCCCC
Q 008452 255 LKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVD---IAVCPNLKKFRAF--NLLG---QEFCTLISKFPL 324 (565)
Q Consensus 255 L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~---l~~~~~L~~L~~~--~i~~---~~l~~l~~~~~~ 324 (565)
|+.|++++|. ..+..... .+++|++|+++++.+.... ... ...+..++.+.+. .+++ ..++..+..+++
T Consensus 200 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 200 VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH-FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC-CC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred CCeecCCCCccccchhhhhhhcccccEEECCCCcccccc-ccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 5555555553 11111111 3556666666665542111 111 1122333333222 2222 234445566667
Q ss_pred cceeecccc
Q 008452 325 LEDLSLFAC 333 (565)
Q Consensus 325 L~~L~L~~C 333 (565)
|+.|+|++|
T Consensus 279 L~~L~Ls~N 287 (353)
T 2z80_A 279 LLELEFSRN 287 (353)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 777777665
No 75
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.09 E-value=4.1e-10 Score=119.30 Aligned_cols=246 Identities=13% Similarity=0.030 Sum_probs=157.5
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL 233 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L 233 (565)
+++++|++... ....+| .+..+++|++|++++|.+...+ ...++|++|+|+++.+.. +. -+..+++|
T Consensus 131 ~~L~~L~L~~n-------~l~~lp-~~~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~l~~--l~-~~~~l~~L 197 (454)
T 1jl5_A 131 PLLEYLGVSNN-------QLEKLP-ELQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEE--LP-ELQNLPFL 197 (454)
T ss_dssp TTCCEEECCSS-------CCSSCC-CCTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS--CC-CCTTCTTC
T ss_pred CCCCEEECcCC-------CCCCCc-ccCCCCCCCEEECCCCcCcccC--CCcccccEEECcCCcCCc--Cc-cccCCCCC
Confidence 58999998762 233467 5788999999999999887622 234699999999998833 22 26789999
Q ss_pred ceeEeeecCCCcccccccCcccceeEcccccccccch-hh-cCccccEeeecCCCCCCCCceeecccccccccccccccc
Q 008452 234 EDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL 311 (565)
Q Consensus 234 e~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~ 311 (565)
++|++++|...+ +... .++|+.|++++|. +..+ .+ .+++|++|++++|.+.. .+. ..++|+.|++.+..
T Consensus 198 ~~L~l~~N~l~~-l~~~-~~~L~~L~l~~n~--l~~lp~~~~l~~L~~L~l~~N~l~~--l~~---~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 198 TAIYADNNSLKK-LPDL-PLSLESIVAGNNI--LEELPELQNLPFLTTIYADNNLLKT--LPD---LPPSLEALNVRDNY 268 (454)
T ss_dssp CEEECCSSCCSS-CCCC-CTTCCEEECCSSC--CSSCCCCTTCTTCCEEECCSSCCSS--CCS---CCTTCCEEECCSSC
T ss_pred CEEECCCCcCCc-CCCC-cCcccEEECcCCc--CCcccccCCCCCCCEEECCCCcCCc--ccc---cccccCEEECCCCc
Confidence 999999986533 2111 3689999999985 3233 23 78899999999988632 111 23678877776432
Q ss_pred hHHHHHHhcCCCCcceeecccccccccccccCCcccEEeecCCcChhhccccCCCccceeEecCCCCc--eeccccccee
Q 008452 312 GQEFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPI--ISINSQCSWN 389 (565)
Q Consensus 312 ~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~~~~L~~L~L~~C~~L~~L~i~~p~L~~~~~~g~~~~~--~~~~sL~~~~ 389 (565)
-.. +....++|+.|++++|. +..++.-.++|+.|+++++. ++.+.--.++|+.+.++++.... ....+|+.++
T Consensus 269 l~~---l~~~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~ 343 (454)
T 1jl5_A 269 LTD---LPELPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLI 343 (454)
T ss_dssp CSC---CCCCCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred ccc---cCcccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCc-CCcccCCcCcCCEEECCCCccccccccCCcCCEEE
Confidence 222 22335789999999874 33333223688888888763 33332111367777777765421 1125778888
Q ss_pred eecccccCCCCcccchHHHHHhhCCCCceEEEEEeccccc-cccccccc
Q 008452 390 IHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSL-FNLYKFSR 437 (565)
Q Consensus 390 l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~-~~~~~~~~ 437 (565)
+..|... + +. . .+++|++|+++.+..... .+|..+..
T Consensus 344 L~~N~l~----~-lp---~---~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 344 ASFNHLA----E-VP---E---LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp CCSSCCS----C-CC---C---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred CCCCccc----c-cc---c---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 8653321 1 11 1 367888898887774422 34555544
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.08 E-value=4.9e-11 Score=123.56 Aligned_cols=178 Identities=15% Similarity=0.091 Sum_probs=95.8
Q ss_pred cccccCCCccEEEecCccCCC-----CCc-------ccCCCcCcEEEcCCeeechH---HHHHHHhcCcCCceeEeeecC
Q 008452 178 QTVFSANFLTHLRLAGCKLEQ-----PCY-------AMCFLSLKKLHLYGVYITEQ---MVQKLLHECHFLEDLNFFECL 242 (565)
Q Consensus 178 ~~l~~~~~L~~L~L~~c~l~~-----~~~-------~~~l~~Lk~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~c~ 242 (565)
..+..+++|++|+|++|.+.. +.. +..+++|++|+|++|.+++. .+...+..+++|++|+|++|.
T Consensus 54 ~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 54 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 334456666777666653332 111 14566777777777666332 234445666777777777665
Q ss_pred CCcc--ccc----ccC---------cccceeEccccc-c--cccch--hh-cCccccEeeecCCCCCCCC----ceeecc
Q 008452 243 GLKL--LCI----SGA---------HKLKILTMETLS-S--ELKGV--KI-VASSLQQLTLQFPFEGQGT----PVVDIA 297 (565)
Q Consensus 243 ~l~~--l~i----~~~---------~~L~~L~l~~c~-~--~l~~i--~~-~~p~L~~L~l~~~~~~~~~----~~~~l~ 297 (565)
.... ..+ ..+ ++|++|++++|. . ++..+ .+ .+++|++|++++|.+.... .+..+.
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence 4110 011 112 567777777664 1 11211 12 5667777777777652111 111455
Q ss_pred cccccccccccc--cch---HHHHHHhcCCCCcceeeccccccccc----ccc-----cCCcccEEeecCCc
Q 008452 298 VCPNLKKFRAFN--LLG---QEFCTLISKFPLLEDLSLFACSSFER----ITI-----SSNQLKHLSLVHCA 355 (565)
Q Consensus 298 ~~~~L~~L~~~~--i~~---~~l~~l~~~~~~L~~L~L~~C~~~~~----l~~-----~~~~L~~L~L~~C~ 355 (565)
.+++|+.|++++ +++ ..++..+..+++|+.|+|++|..-.. +.. .+++|+.|+|++|.
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 667777666653 232 44556677778888888887742211 111 15677777777764
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.08 E-value=3.5e-10 Score=111.27 Aligned_cols=171 Identities=16% Similarity=0.102 Sum_probs=95.4
Q ss_pred hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452 153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF 232 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~ 232 (565)
.+++++|.+... ....+ ..+..+++|++|+|++|.+...+.+..+++|++|+|++|.++.- ....+..+++
T Consensus 40 l~~L~~L~l~~~-------~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 110 (272)
T 3rfs_A 40 LNSIDQIIANNS-------DIKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTN 110 (272)
T ss_dssp HTTCCEEECTTS-------CCCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTT
T ss_pred ccceeeeeeCCC-------Ccccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcC
Confidence 357777776542 11122 23556778888888888777655667778888888888776321 1123456778
Q ss_pred CceeEeeecCCCccc--ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccccc
Q 008452 233 LEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF 308 (565)
Q Consensus 233 Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~ 308 (565)
|++|++++|...... .+..+++|+.|++++|. ..+..-.+ .+++|++|++++|.+ .......++.+++|+.|++.
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc-CccCHHHhcCCccCCEEECC
Confidence 888888777543221 13446777777777774 22211122 567777777777765 22222234455555555544
Q ss_pred ccch-HHHHHHhcCCCCcceeecccc
Q 008452 309 NLLG-QEFCTLISKFPLLEDLSLFAC 333 (565)
Q Consensus 309 ~i~~-~~l~~l~~~~~~L~~L~L~~C 333 (565)
+..- ......+..+++|+.|+|.++
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCccCHHHHhCCcCCCEEEccCC
Confidence 2111 111123344555555555543
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.08 E-value=1.2e-10 Score=112.21 Aligned_cols=78 Identities=9% Similarity=0.031 Sum_probs=32.4
Q ss_pred CccEEEecCccCCC--CCcccCCCcCcEEEcCCee-echHHHHHHHhcCcCCceeEeeecCCCcccc---cccCccccee
Q 008452 185 FLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVY-ITEQMVQKLLHECHFLEDLNFFECLGLKLLC---ISGAHKLKIL 258 (565)
Q Consensus 185 ~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~---i~~~~~L~~L 258 (565)
+|++|+|+++.+.. +..+..+++|++|+|+++. ++.- ....+.++++|++|++.+|..++.+. +..+++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 44555555554444 1234445555555555443 2100 00112344555555555433333221 2234455555
Q ss_pred Ecccc
Q 008452 259 TMETL 263 (565)
Q Consensus 259 ~l~~c 263 (565)
++++|
T Consensus 111 ~l~~n 115 (239)
T 2xwt_C 111 GIFNT 115 (239)
T ss_dssp EEEEE
T ss_pred eCCCC
Confidence 55544
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.07 E-value=8.6e-11 Score=115.74 Aligned_cols=190 Identities=19% Similarity=0.154 Sum_probs=98.3
Q ss_pred CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcccceeE
Q 008452 184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKLKILT 259 (565)
Q Consensus 184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~ 259 (565)
++|++|+|++|.+.. +..+..+++|++|+|+++.++.- ....+..+++|++|++++|...... .+..+++|+.|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 356677777666655 22556666777777766655211 0112455666777777666532211 233456677777
Q ss_pred ccccc-ccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccccccc--ch---HHHHHHhcCCCCcc-eeecc
Q 008452 260 METLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNL--LG---QEFCTLISKFPLLE-DLSLF 331 (565)
Q Consensus 260 l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i--~~---~~l~~l~~~~~~L~-~L~L~ 331 (565)
+++|. ..+....+ .+++|++|+++++.+.....+..++.+++|+.|++++. +. ..+. .+.+++.|. .|+++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLS 185 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCTTCCEEEECC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh-hhhhccccceeeecC
Confidence 76664 22222223 56667777777666532233455666667776665532 11 1111 122233333 66666
Q ss_pred ccccccccc---ccCCcccEEeecCCcChhhccc----cCCCccceeEecCCC
Q 008452 332 ACSSFERIT---ISSNQLKHLSLVHCASLKAINI----DAPNLLSCNFWYNPF 377 (565)
Q Consensus 332 ~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L~i----~~p~L~~~~~~g~~~ 377 (565)
++.. ..+. ....+|+.|+++++. ++.+.. ..++|+.+.++++++
T Consensus 186 ~n~l-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 186 LNPM-NFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SSCC-CEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCcc-cccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCcc
Confidence 6532 2221 122367777777663 433321 245677777777654
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.07 E-value=1.7e-10 Score=113.70 Aligned_cols=189 Identities=19% Similarity=0.076 Sum_probs=107.1
Q ss_pred CCcEEEEEEeCCCCcCcccccccCc-ccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQ-TVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC 230 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c 230 (565)
+++++|++... ....++. .+..+++|++|+|++|.+.. +..+..+++|++|+|+++.+..-. ...+..+
T Consensus 28 ~~l~~L~ls~n-------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFN-------PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGL 99 (276)
T ss_dssp TTCCEEECTTC-------CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTC
T ss_pred CCccEEECCCC-------cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCC
Confidence 46777777542 2223333 45567788888888887766 335677888888888887763211 1234667
Q ss_pred cCCceeEeeecCCCc--ccccccCcccceeEccccc-cccc-chhh-cCccccEeeecCCCCCCCCceeecccccccc--
Q 008452 231 HFLEDLNFFECLGLK--LLCISGAHKLKILTMETLS-SELK-GVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLK-- 303 (565)
Q Consensus 231 p~Le~L~L~~c~~l~--~l~i~~~~~L~~L~l~~c~-~~l~-~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~-- 303 (565)
++|++|++.+|.... ...+..+++|+.|+++++. ..+. .-.+ .+++|++|++++|.+ .......+..+++|+
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC-CEECGGGGHHHHTCTTC
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC-CcCCHHHhhhhhhcccc
Confidence 888888887775422 2235556788888888774 1111 1123 567888888888775 222223444555555
Q ss_pred --cccccccchHHHHHHhcCCCCcceeecccccccccccc----cCCcccEEeec
Q 008452 304 --KFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITI----SSNQLKHLSLV 352 (565)
Q Consensus 304 --~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~----~~~~L~~L~L~ 352 (565)
.|++++..-..+........+|+.|+|++|. +..++. ..++|+.|+++
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECC
T ss_pred ceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEcc
Confidence 3444322111111112233478888888764 223321 23566666665
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.07 E-value=1.6e-10 Score=113.69 Aligned_cols=169 Identities=16% Similarity=0.035 Sum_probs=113.7
Q ss_pred cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcccceeE
Q 008452 182 SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKLKILT 259 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~ 259 (565)
..++|+.|.+.++.+...+.+..+++|++|+|+++.+.+- ..+..+++|++|++++|...... .+..+++|+.|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 4568888999888877756677888999999988887331 14567888999999888543221 145578899999
Q ss_pred ccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccch-HHHHHHhcCCCCcceeeccccccc
Q 008452 260 METLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLG-QEFCTLISKFPLLEDLSLFACSSF 336 (565)
Q Consensus 260 l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~-~~l~~l~~~~~~L~~L~L~~C~~~ 336 (565)
+++|. ..+..-.+ .+++|++|++++|.+ .......++.+++|+.|++.+..- ......+.++++|+.|++++|...
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 98885 22222223 678899999988876 333334467788888888764322 222334577888999999887432
Q ss_pred cccc---ccCCcccEEeecCC
Q 008452 337 ERIT---ISSNQLKHLSLVHC 354 (565)
Q Consensus 337 ~~l~---~~~~~L~~L~L~~C 354 (565)
+... ..+++|+.|++.++
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSS
T ss_pred ccCHHHHhCCcCCCEEEccCC
Confidence 2221 23467888887765
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.06 E-value=3.7e-10 Score=112.29 Aligned_cols=163 Identities=15% Similarity=0.082 Sum_probs=104.5
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL 233 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L 233 (565)
+++++|++... ....++ .+..+++|++|+|++|.+...+.+..+++|++|+|+++.+++ +.. +..+++|
T Consensus 46 ~~L~~L~l~~~-------~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L 114 (291)
T 1h6t_A 46 NSIDQIIANNS-------DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKL 114 (291)
T ss_dssp HTCCEEECTTS-------CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTC
T ss_pred CcccEEEccCC-------CcccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCC
Confidence 57888877652 122333 356678888888888888773337788888888888888733 122 6778888
Q ss_pred ceeEeeecCCCcccccccCcccceeEcccccccccchh-h-cCccccEeeecCCCCCCCCceeecccccccccccccccc
Q 008452 234 EDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVK-I-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL 311 (565)
Q Consensus 234 e~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~-~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~ 311 (565)
++|++++|.....-.+..+++|+.|++++|. +..+. + .+++|+.|++++|.+... .+ ++.+++|+.|++++..
T Consensus 115 ~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~--l~~~~~l~~l~~L~~L~L~~N~l~~~-~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 115 KSLSLEHNGISDINGLVHLPQLESLYLGNNK--ITDITVLSRLTKLDTLSLEDNQISDI-VP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCCEEECCSSC--CCCCGGGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCCChhhcCCCCCCEEEccCCc--CCcchhhccCCCCCEEEccCCccccc-hh--hcCCCccCEEECCCCc
Confidence 8888888865332234457888888888874 22222 2 678888888888876222 11 6666677766665322
Q ss_pred hHHHHHHhcCCCCcceeecccc
Q 008452 312 GQEFCTLISKFPLLEDLSLFAC 333 (565)
Q Consensus 312 ~~~l~~l~~~~~~L~~L~L~~C 333 (565)
-..++. +..+++|+.|+++++
T Consensus 190 i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 190 ISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCBCGG-GTTCTTCSEEEEEEE
T ss_pred CCCChh-hccCCCCCEEECcCC
Confidence 212222 556666777776664
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.05 E-value=1.4e-10 Score=116.52 Aligned_cols=150 Identities=17% Similarity=0.110 Sum_probs=84.6
Q ss_pred HhCCcEEEEEEeCCCCcCcccccccCccc--ccCCCccEEEecCccCCC-CCcccCC-----CcCcEEEcCCeeechHHH
Q 008452 152 IENGVKELDFQILPDIKDYVHTYTLPQTV--FSANFLTHLRLAGCKLEQ-PCYAMCF-----LSLKKLHLYGVYITEQMV 223 (565)
Q Consensus 152 ~~~~l~~L~L~~~~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~c~l~~-~~~~~~l-----~~Lk~L~L~~~~~~~~~l 223 (565)
...++++|++... .....+|..+ ..+++|++|+|++|.+.. +..+..+ ++|++|+|+++.++.- .
T Consensus 93 ~l~~L~~L~L~~n------~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~ 165 (312)
T 1wwl_A 93 GISGLQELTLENL------EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-S 165 (312)
T ss_dssp TTSCCCEEEEEEE------BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-C
T ss_pred CcCCccEEEccCC------cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-h
Confidence 3467777777762 1123455554 556778888888777765 4334444 7777787777776221 1
Q ss_pred HHHHhcCcCCceeEeeecCCCccc------ccccCcccceeEccccc-ccccchh----hcCccccEeeecCCCCCCCCc
Q 008452 224 QKLLHECHFLEDLNFFECLGLKLL------CISGAHKLKILTMETLS-SELKGVK----IVASSLQQLTLQFPFEGQGTP 292 (565)
Q Consensus 224 ~~ll~~cp~Le~L~L~~c~~l~~l------~i~~~~~L~~L~l~~c~-~~l~~i~----~~~p~L~~L~l~~~~~~~~~~ 292 (565)
...+..+++|++|++++|...+.. ....+++|+.|++++|. ..+..+. ..+++|++|++++|.+.....
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 123456777777777777653321 11446777777777774 2111221 145777777777777522121
Q ss_pred eeeccccccccccccc
Q 008452 293 VVDIAVCPNLKKFRAF 308 (565)
Q Consensus 293 ~~~l~~~~~L~~L~~~ 308 (565)
...+..+++|+.|+++
T Consensus 246 ~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLS 261 (312)
T ss_dssp CSCCCCCTTCCEEECT
T ss_pred hhhhhhcCCCCEEECC
Confidence 1233334455544444
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.04 E-value=5.7e-10 Score=110.96 Aligned_cols=163 Identities=16% Similarity=0.114 Sum_probs=120.9
Q ss_pred cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcc
Q 008452 182 SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTME 261 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~ 261 (565)
.+++|+.|.+++|.+...+.+..+++|++|+|+++.+++- .. +..+++|++|++++|.....-.+..+++|+.|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence 4678999999999888755688899999999999998332 12 78899999999999975433345668999999999
Q ss_pred cccccccchh-h-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccccc
Q 008452 262 TLSSELKGVK-I-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERI 339 (565)
Q Consensus 262 ~c~~~l~~i~-~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l 339 (565)
+|. +..+. + .+++|++|++++|.+... ..++.+++|+.|++.+..-..+.. +..+++|+.|++++|. +..+
T Consensus 121 ~n~--i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i~~l 193 (291)
T 1h6t_A 121 HNG--ISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDL 193 (291)
T ss_dssp TSC--CCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBC
T ss_pred CCc--CCCChhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-CCCC
Confidence 995 33332 3 789999999999987322 467889999988887432222222 7889999999999873 2222
Q ss_pred c--ccCCcccEEeecCC
Q 008452 340 T--ISSNQLKHLSLVHC 354 (565)
Q Consensus 340 ~--~~~~~L~~L~L~~C 354 (565)
. ...++|+.|+++++
T Consensus 194 ~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 194 RALAGLKNLDVLELFSQ 210 (291)
T ss_dssp GGGTTCTTCSEEEEEEE
T ss_pred hhhccCCCCCEEECcCC
Confidence 2 23466777776655
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.03 E-value=3.3e-10 Score=111.30 Aligned_cols=171 Identities=19% Similarity=0.107 Sum_probs=119.6
Q ss_pred CCcEEEEEEeCCCCcCcccccccCc-ccccCCCccEEEecCccCCC-C-CcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQ-TVFSANFLTHLRLAGCKLEQ-P-CYAMCFLSLKKLHLYGVYITEQMVQKLLHEC 230 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~-~-~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c 230 (565)
.++++|++... ....+|. .+..+++|++|+|++|.+.. + ..+..+++|++|+|+++.+..- ....+..+
T Consensus 37 ~~l~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSN-------KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQL 108 (270)
T ss_dssp TTCSEEECCSS-------CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTC
T ss_pred CCCCEEECcCC-------CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccc
Confidence 47888888762 2334444 56678999999999998877 3 3457899999999999988321 11345779
Q ss_pred cCCceeEeeecCCCcc--cccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452 231 HFLEDLNFFECLGLKL--LCISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR 306 (565)
Q Consensus 231 p~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 306 (565)
++|++|++.+|..... -.+..+++|+.|++++|. ..+..-.+ .+++|++|+++++.+ .......+..+++|+.|+
T Consensus 109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLK 187 (270)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC-cEeChhHhccCCCcCEEE
Confidence 9999999999865322 124557999999999985 22222223 679999999999986 333334577889999888
Q ss_pred ccccchHHH-HHHhcCCCCcceeecccc
Q 008452 307 AFNLLGQEF-CTLISKFPLLEDLSLFAC 333 (565)
Q Consensus 307 ~~~i~~~~l-~~l~~~~~~L~~L~L~~C 333 (565)
+.+..-..+ ...+..+++|+.|+|.++
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 764322222 234667888999999875
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.00 E-value=4.9e-10 Score=122.62 Aligned_cols=165 Identities=15% Similarity=0.077 Sum_probs=115.7
Q ss_pred hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452 153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF 232 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~ 232 (565)
..+|++|.+... ....+| .+..+++|+.|+|++|.+...+.+..+++|+.|+|++|.+.+ +. .+..+++
T Consensus 42 L~~L~~L~l~~n-------~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~ 110 (605)
T 1m9s_A 42 LNSIDQIIANNS-------DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKK 110 (605)
T ss_dssp HTTCCCCBCTTC-------CCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTT
T ss_pred CCCCCEEECcCC-------CCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCC
Confidence 357777776542 222333 467788999999999988873347889999999999998833 11 3677899
Q ss_pred CceeEeeecCCCcccccccCcccceeEcccccccccch-hh-cCccccEeeecCCCCCCCCceeeccccccccccccccc
Q 008452 233 LEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNL 310 (565)
Q Consensus 233 Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i 310 (565)
|+.|+|++|.....-.+..+++|+.|++++|. +..+ .+ .+++|+.|++++|.+. ...+ +..+++|+.|++++.
T Consensus 111 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~--l~~l~~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 111 LKSLSLEHNGISDINGLVHLPQLESLYLGNNK--ITDITVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CCEEECTTSCCCCCGGGGGCTTCSEEECCSSC--CCCCGGGGSCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCCCCccccCCCccCEEECCCCc--cCCchhhcccCCCCEEECcCCcCC-Cchh--hccCCCCCEEECcCC
Confidence 99999998865432235567899999999885 3323 23 7889999999988862 2222 778888888877643
Q ss_pred chHHHHHHhcCCCCcceeeccccc
Q 008452 311 LGQEFCTLISKFPLLEDLSLFACS 334 (565)
Q Consensus 311 ~~~~l~~l~~~~~~L~~L~L~~C~ 334 (565)
.-..+ ..+..+++|+.|+|++|.
T Consensus 186 ~i~~l-~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 186 HISDL-RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCCBC-GGGTTCTTCSEEECCSEE
T ss_pred CCCCC-hHHccCCCCCEEEccCCc
Confidence 22222 236778888888888864
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.98 E-value=8.4e-10 Score=109.66 Aligned_cols=100 Identities=20% Similarity=0.028 Sum_probs=46.6
Q ss_pred CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcccceeE
Q 008452 184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKLKILT 259 (565)
Q Consensus 184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~ 259 (565)
++|+.|+|++|.+.. +..+..+++|++|+|+++.++.-.. ...+++|+.|++++|... .+ .+..+++|+.|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 455666666665554 3345556666666666655521100 134555666665555331 11 122345555555
Q ss_pred ccccc-ccccchhh-cCccccEeeecCCCC
Q 008452 260 METLS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 260 l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
++++. ..+..-.+ .+++|++|++++|.+
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence 55552 11111112 345555555555544
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.97 E-value=1e-09 Score=120.18 Aligned_cols=164 Identities=16% Similarity=0.101 Sum_probs=121.7
Q ss_pred cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcc
Q 008452 182 SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTME 261 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~ 261 (565)
.+++|+.|.+++|.+...+.+..+++|+.|+|++|.+.+-. . +..+++|+.|+|++|.....-.+..+++|+.|+++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 117 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECT
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEec
Confidence 46789999999999888667889999999999999983221 1 78999999999999965332245668999999999
Q ss_pred cccccccchh-h-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccccc
Q 008452 262 TLSSELKGVK-I-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERI 339 (565)
Q Consensus 262 ~c~~~l~~i~-~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l 339 (565)
+|. +..+. + .+++|+.|++++|.+... ..++.+++|+.|++++..-..+.. +..+++|+.|+|++|.. ..+
T Consensus 118 ~N~--l~~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i-~~l 190 (605)
T 1m9s_A 118 HNG--ISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI-SDL 190 (605)
T ss_dssp TSC--CCCCGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CBC
T ss_pred CCC--CCCCccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC-CCC
Confidence 995 33332 3 789999999999987322 467888999988887433222222 78899999999998732 222
Q ss_pred c--ccCCcccEEeecCCc
Q 008452 340 T--ISSNQLKHLSLVHCA 355 (565)
Q Consensus 340 ~--~~~~~L~~L~L~~C~ 355 (565)
+ ..+++|+.|+|.+|+
T Consensus 191 ~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGGTTCTTCSEEECCSEE
T ss_pred hHHccCCCCCEEEccCCc
Confidence 2 234677777777653
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.97 E-value=1.2e-09 Score=101.79 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=50.1
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL 233 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L 233 (565)
+++++|++... ....+| .+..+++|++|++++|.+...+.+..+++|++|+|+++.+++.... .+..+++|
T Consensus 44 ~~L~~L~l~~n-------~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L 114 (197)
T 4ezg_A 44 NSLTYITLANI-------NVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSL 114 (197)
T ss_dssp HTCCEEEEESS-------CCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTC
T ss_pred CCccEEeccCC-------CccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccCh-hhcCCCCC
Confidence 45666666541 122344 3555566666666666554444555566666666666555322111 13445555
Q ss_pred ceeEeeecCCCcc--cccccCcccceeEcccc
Q 008452 234 EDLNFFECLGLKL--LCISGAHKLKILTMETL 263 (565)
Q Consensus 234 e~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c 263 (565)
+.|++++|..... -.+..+++|+.|++++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 5555555543221 11233455555555554
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.97 E-value=5.2e-10 Score=107.66 Aligned_cols=190 Identities=12% Similarity=-0.029 Sum_probs=110.9
Q ss_pred CCcEEEEEEeCCCCcCcccccccCc-ccccCCCccEEEecCcc-CCC--CCcccCCCcCcEEEcCC-eeechHHHHHHHh
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQ-TVFSANFLTHLRLAGCK-LEQ--PCYAMCFLSLKKLHLYG-VYITEQMVQKLLH 228 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~-l~~--~~~~~~l~~Lk~L~L~~-~~~~~~~l~~ll~ 228 (565)
.++++|++... ....+|. .+..+++|++|++++|. +.. +..+.++++|++|+|++ +.+..- ....+.
T Consensus 31 ~~l~~L~l~~n-------~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~ 102 (239)
T 2xwt_C 31 PSTQTLKLIET-------HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALK 102 (239)
T ss_dssp TTCCEEEEESC-------CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEE
T ss_pred CcccEEEEeCC-------cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhC
Confidence 48899998872 2334555 45578999999999996 766 34678899999999987 665211 112356
Q ss_pred cCcCCceeEeeecCCCcccccccCcccc---eeEcccc-c-ccccchhh-cCcccc-EeeecCCCCCCCCceeecccccc
Q 008452 229 ECHFLEDLNFFECLGLKLLCISGAHKLK---ILTMETL-S-SELKGVKI-VASSLQ-QLTLQFPFEGQGTPVVDIAVCPN 301 (565)
Q Consensus 229 ~cp~Le~L~L~~c~~l~~l~i~~~~~L~---~L~l~~c-~-~~l~~i~~-~~p~L~-~L~l~~~~~~~~~~~~~l~~~~~ 301 (565)
++++|++|++.+|....--.+..+++|+ .|+++++ . ..+..-.+ .+++|+ +|+++++.+. ..+......++
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~~~~~~~ 180 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGYAFNGTK 180 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECTTTTTTCE
T ss_pred CCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCHhhcCCCC
Confidence 7899999999998653311234466776 8888887 3 22222223 678888 8888888751 11111111245
Q ss_pred cccccccccc-hHHH-HHHhcCC-CCcceeecccccccccccc-cCCcccEEeecCC
Q 008452 302 LKKFRAFNLL-GQEF-CTLISKF-PLLEDLSLFACSSFERITI-SSNQLKHLSLVHC 354 (565)
Q Consensus 302 L~~L~~~~i~-~~~l-~~l~~~~-~~L~~L~L~~C~~~~~l~~-~~~~L~~L~L~~C 354 (565)
|+.|++.+.. -..+ ...+.++ ++|+.|+|+++. +..++. ...+|+.|.+.++
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCc
Confidence 5555554221 1111 2234445 566666665532 222221 2344555554444
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.96 E-value=5.9e-10 Score=108.21 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=91.7
Q ss_pred ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--c
Q 008452 173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--C 248 (565)
Q Consensus 173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~ 248 (565)
...+|..+. ++|+.|+|++|.+.. +..+..+++|++|+|+++.+..- ....+..+++|++|+|++|...... .
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 102 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGV 102 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhH
Confidence 345555443 578888888888877 44577888888888888877321 1233567888888888887643211 2
Q ss_pred cccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHH-HHHhcCCCCc
Q 008452 249 ISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEF-CTLISKFPLL 325 (565)
Q Consensus 249 i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l-~~l~~~~~~L 325 (565)
+..+++|+.|+++++. ..+..-.+ .+++|++|++++|.+ .......++.+++|+.|++.+..-..+ ...+..+++|
T Consensus 103 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 3446788888888774 22222122 567888888888775 222222345555555555442211111 1233445555
Q ss_pred ceeeccc
Q 008452 326 EDLSLFA 332 (565)
Q Consensus 326 ~~L~L~~ 332 (565)
+.|+|.+
T Consensus 182 ~~L~l~~ 188 (251)
T 3m19_A 182 QTITLFG 188 (251)
T ss_dssp CEEECCS
T ss_pred CEEEeeC
Confidence 5555554
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.96 E-value=2e-09 Score=106.96 Aligned_cols=170 Identities=18% Similarity=0.055 Sum_probs=117.2
Q ss_pred cccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCccccee
Q 008452 180 VFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKIL 258 (565)
Q Consensus 180 l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L 258 (565)
+.++++|++++++++.+.. +... .++|+.|+|+++.++.-. ...+..+++|++|+|++|.....-....+++|+.|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 4567799999999998887 4333 479999999999883221 23467899999999999865332223457999999
Q ss_pred Eccccc-ccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHH-HHHHhcCCCCcceeeccccccc
Q 008452 259 TMETLS-SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQE-FCTLISKFPLLEDLSLFACSSF 336 (565)
Q Consensus 259 ~l~~c~-~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~-l~~l~~~~~~L~~L~L~~C~~~ 336 (565)
+++++. ..+......+++|++|++++|.+ ....+..++.+++|+.|++.+..-.. ....+..+++|+.|+|+++. +
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l 160 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-L 160 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-C
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-C
Confidence 999985 22222223689999999999987 34344567888899988876432222 23345678899999998863 2
Q ss_pred ccccc----cCCcccEEeecCC
Q 008452 337 ERITI----SSNQLKHLSLVHC 354 (565)
Q Consensus 337 ~~l~~----~~~~L~~L~L~~C 354 (565)
..++. ..++|+.|+++++
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCHHHhcCcCCCCEEECCCC
Confidence 33332 2356666766655
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.94 E-value=2e-09 Score=100.38 Aligned_cols=123 Identities=14% Similarity=0.078 Sum_probs=63.9
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH 231 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp 231 (565)
+++++|++.... ...+..+..+++|++|++++|.+.. +..+..+++|++|+|++|.+++... ..+..++
T Consensus 66 ~~L~~L~l~~n~--------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~ 136 (197)
T 4ezg_A 66 HNIKDLTINNIH--------ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLP 136 (197)
T ss_dssp TTCSEEEEESCC--------CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCS
T ss_pred CCCCEEEccCCC--------CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCC
Confidence 466666666521 1112244456666666666666654 4555566666666666666643322 2345566
Q ss_pred CCceeEeeecCCCccc-ccccCcccceeEcccccccccch-hh-cCccccEeeecCCCC
Q 008452 232 FLEDLNFFECLGLKLL-CISGAHKLKILTMETLSSELKGV-KI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 232 ~Le~L~L~~c~~l~~l-~i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~L~~L~l~~~~~ 287 (565)
+|++|++++|..++.+ .+..+++|+.|++++|. +..+ .+ .+++|+.|+++++.+
T Consensus 137 ~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~--i~~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG--VHDYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC--CCCCTTGGGCSSCCEEEECBC--
T ss_pred CCCEEEccCCCCccccHhhcCCCCCCEEECCCCC--CcChHHhccCCCCCEEEeeCccc
Confidence 6666666666533332 23335566666666553 2111 22 455555555555543
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.92 E-value=6.5e-10 Score=114.08 Aligned_cols=113 Identities=15% Similarity=0.029 Sum_probs=73.7
Q ss_pred ccCcccccCCCccEEEecCccCCC-C-----CcccCCC-cCcEEEcCCeeech---HHHHHHHhcC-cCCceeEeeecCC
Q 008452 175 TLPQTVFSANFLTHLRLAGCKLEQ-P-----CYAMCFL-SLKKLHLYGVYITE---QMVQKLLHEC-HFLEDLNFFECLG 243 (565)
Q Consensus 175 ~lp~~l~~~~~L~~L~L~~c~l~~-~-----~~~~~l~-~Lk~L~L~~~~~~~---~~l~~ll~~c-p~Le~L~L~~c~~ 243 (565)
.+|..+...++|++|+|++|.+.. . ..+..++ +|++|+|++|.+++ ..+..++..+ +.|++|+|++|..
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 344444445679999999998876 2 3456777 89999999998843 3455555554 8999999999864
Q ss_pred Cccc--c----cccC-cccceeEccccc-ccc--cchh--h-c-CccccEeeecCCCC
Q 008452 244 LKLL--C----ISGA-HKLKILTMETLS-SEL--KGVK--I-V-ASSLQQLTLQFPFE 287 (565)
Q Consensus 244 l~~l--~----i~~~-~~L~~L~l~~c~-~~l--~~i~--~-~-~p~L~~L~l~~~~~ 287 (565)
.... . +..+ ++|+.|++++|. ... ..+. + . +++|++|++++|.+
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 2211 1 2223 688888888885 111 1111 1 1 35888888888875
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.89 E-value=1.9e-09 Score=108.12 Aligned_cols=125 Identities=16% Similarity=0.034 Sum_probs=82.7
Q ss_pred CCCccEEEecCccCCC--CCcc--cCCCcCcEEEcCCeeechH--HHH-HHHhcCcCCceeEeeecCCCccc--ccccCc
Q 008452 183 ANFLTHLRLAGCKLEQ--PCYA--MCFLSLKKLHLYGVYITEQ--MVQ-KLLHECHFLEDLNFFECLGLKLL--CISGAH 253 (565)
Q Consensus 183 ~~~L~~L~L~~c~l~~--~~~~--~~l~~Lk~L~L~~~~~~~~--~l~-~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~ 253 (565)
.++|++|+|++|.+.. +..+ ..+++|++|+|++|.++.. .+. .-+..+++|++|+|++|...... .+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4679999999998876 4444 8899999999999998431 111 22347999999999999763322 344578
Q ss_pred ccceeEccccc-ccccch---h--hcCccccEeeecCCCCCCCCcee---eccccccccccccc
Q 008452 254 KLKILTMETLS-SELKGV---K--IVASSLQQLTLQFPFEGQGTPVV---DIAVCPNLKKFRAF 308 (565)
Q Consensus 254 ~L~~L~l~~c~-~~l~~i---~--~~~p~L~~L~l~~~~~~~~~~~~---~l~~~~~L~~L~~~ 308 (565)
+|+.|++++|. .+...+ . ..+++|++|++++|.+ ...... .++.+++|+.|+++
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls 232 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLS 232 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECT
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECC
Confidence 99999999885 111111 1 2577888888888875 111000 13445556655554
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.89 E-value=1.2e-09 Score=112.12 Aligned_cols=174 Identities=14% Similarity=0.037 Sum_probs=88.2
Q ss_pred cccCC-CccEEEecCccCCC--CCcccC-----CCcCcEEEcCCeeech---HHHHHHHhcC-cCCceeEeeecCCCccc
Q 008452 180 VFSAN-FLTHLRLAGCKLEQ--PCYAMC-----FLSLKKLHLYGVYITE---QMVQKLLHEC-HFLEDLNFFECLGLKLL 247 (565)
Q Consensus 180 l~~~~-~L~~L~L~~c~l~~--~~~~~~-----l~~Lk~L~L~~~~~~~---~~l~~ll~~c-p~Le~L~L~~c~~l~~l 247 (565)
+..++ +|++|+|++|.+.. +..+.. +++|++|+|++|.+++ ..+...+..+ ++|++|+|++|.. +..
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~ 124 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSK 124 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGS
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcH
Confidence 34455 67777777776654 222222 2677777777777632 2344444555 6777777777753 211
Q ss_pred c-------ccc-CcccceeEccccc-c--cccchh--h-cCc-cccEeeecCCCCCCCCcee----ecccc-cccccccc
Q 008452 248 C-------ISG-AHKLKILTMETLS-S--ELKGVK--I-VAS-SLQQLTLQFPFEGQGTPVV----DIAVC-PNLKKFRA 307 (565)
Q Consensus 248 ~-------i~~-~~~L~~L~l~~c~-~--~l~~i~--~-~~p-~L~~L~l~~~~~~~~~~~~----~l~~~-~~L~~L~~ 307 (565)
. +.. +.+|++|++++|. . +...+. + ..+ +|++|++++|.+. ..... .+..+ ++|+.|++
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA-SKNCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc-hhhHHHHHHHHHhCCCCCCEEEC
Confidence 1 111 2477777777764 1 111221 1 233 6777777777652 22111 22233 36666665
Q ss_pred cc--cch---HHHHHHhcC-CCCcceeecccccccc-------cccccCCcccEEeecCCc
Q 008452 308 FN--LLG---QEFCTLISK-FPLLEDLSLFACSSFE-------RITISSNQLKHLSLVHCA 355 (565)
Q Consensus 308 ~~--i~~---~~l~~l~~~-~~~L~~L~L~~C~~~~-------~l~~~~~~L~~L~L~~C~ 355 (565)
++ +++ ..+...+.. .++|+.|+|++|.--. .+....++|+.|++++|.
T Consensus 204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 53 222 224444433 3577777777762211 111233566666666653
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.88 E-value=2.2e-09 Score=107.78 Aligned_cols=193 Identities=17% Similarity=0.061 Sum_probs=121.9
Q ss_pred CCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccC-----CCccEEEecCccCC
Q 008452 123 FSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSA-----NFLTHLRLAGCKLE 197 (565)
Q Consensus 123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~-----~~L~~L~L~~c~l~ 197 (565)
..++.+.+......... ... +.....+++++|+++.. ....+|..+... ++|++|+|++|.+.
T Consensus 95 ~~L~~L~L~~n~l~~~~-~~~----~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~ 162 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTA-PPP----LLEATGPDLNILNLRNV-------SWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162 (312)
T ss_dssp SCCCEEEEEEEBCBSCC-CCC----SSSCCSCCCSEEEEESC-------BCSSSSSHHHHHHTTCCTTCCEEEEESCSCC
T ss_pred CCccEEEccCCcccchh-HHH----HHHhcCCCccEEEccCC-------CCcchhHHHHHHHHhhcCCCcEEEeeCCCCc
Confidence 67889999887622110 000 00112468999999872 233335555554 89999999999988
Q ss_pred C--CCcccCCCcCcEEEcCCeeech-HHHHHHH--hcCcCCceeEeeecCCCc--ccc---cccCcccceeEccccc-cc
Q 008452 198 Q--PCYAMCFLSLKKLHLYGVYITE-QMVQKLL--HECHFLEDLNFFECLGLK--LLC---ISGAHKLKILTMETLS-SE 266 (565)
Q Consensus 198 ~--~~~~~~l~~Lk~L~L~~~~~~~-~~l~~ll--~~cp~Le~L~L~~c~~l~--~l~---i~~~~~L~~L~l~~c~-~~ 266 (565)
. +..+..+++|++|+|++|.+.. ..+..-+ ..+++|++|++++|.... .+. ...+++|+.|++++|. .+
T Consensus 163 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 7 4678899999999999998732 2232233 789999999999996532 211 1246899999999985 22
Q ss_pred ccchh-h-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccc
Q 008452 267 LKGVK-I-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFA 332 (565)
Q Consensus 267 l~~i~-~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~ 332 (565)
..... . .+++|++|++++|.+. ..+..+. ++|+.|++++..-..++. +..+++|+.|+|++
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTT
T ss_pred ccchhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccC
Confidence 22112 2 4689999999999873 2232222 556655555322111122 44555566665554
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.83 E-value=4.6e-09 Score=102.71 Aligned_cols=143 Identities=15% Similarity=0.079 Sum_probs=82.9
Q ss_pred ccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEc
Q 008452 181 FSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTM 260 (565)
Q Consensus 181 ~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l 260 (565)
..+++|++|++++|.+...+.+..+++|++|+|+++.+++- .. +..+++|++|++++|..-..-.+.. ++|+.|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEc
Confidence 34567777777777666634566677777777777766221 11 5667777777777775422112222 67777777
Q ss_pred ccccccccch-hh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccc
Q 008452 261 ETLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFAC 333 (565)
Q Consensus 261 ~~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C 333 (565)
++|. +..+ .+ .+++|+.|++++|.+... ..++.+++|+.|++.+..-..+ ..+..+++|+.|+++++
T Consensus 114 ~~N~--l~~~~~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 114 DNNE--LRDTDSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CSSC--CSBSGGGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred cCCc--cCCChhhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence 7764 2222 22 567777777777765221 1455566666555542211111 34566777777777765
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.83 E-value=4e-09 Score=99.07 Aligned_cols=150 Identities=18% Similarity=0.084 Sum_probs=87.9
Q ss_pred cccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--cc
Q 008452 174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CI 249 (565)
Q Consensus 174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i 249 (565)
..+|..+ .++|++|+|+++.+.. +..+..+++|++|+|+++.+..- ....+..+++|++|+|++|...... .+
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence 3445443 3578888998888776 33467888888888888877311 1223567888888888888542211 13
Q ss_pred ccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcce
Q 008452 250 SGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLED 327 (565)
Q Consensus 250 ~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~ 327 (565)
..+++|+.|+++++. ..+..-.+ .+++|++|++++|.+ .......+..+++|+.|++.+. .+...+++|+.
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N------~~~~~~~~l~~ 169 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDN------PWDCTCPGIRY 169 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSC------CBCCCTTTTHH
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCC------CeecCCCCHHH
Confidence 456788888888774 22222123 567888888888775 2222222444555555544422 11233445555
Q ss_pred eecccc
Q 008452 328 LSLFAC 333 (565)
Q Consensus 328 L~L~~C 333 (565)
|+++.+
T Consensus 170 L~~~~n 175 (208)
T 2o6s_A 170 LSEWIN 175 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 100
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.78 E-value=4.3e-09 Score=95.28 Aligned_cols=127 Identities=17% Similarity=0.100 Sum_probs=74.8
Q ss_pred CCccEEEecCccCC--C-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc--cccCccccee
Q 008452 184 NFLTHLRLAGCKLE--Q-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC--ISGAHKLKIL 258 (565)
Q Consensus 184 ~~L~~L~L~~c~l~--~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~--i~~~~~L~~L 258 (565)
++|++|+|++|.+. . +..+..+++|++|+|++|.++.- ..+..+++|++|++++|.....+. +..+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 67888888888877 3 55567788888888888877332 345667777777777775433111 1124566666
Q ss_pred Eccccc-ccccc-hhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccccc
Q 008452 259 TMETLS-SELKG-VKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACS 334 (565)
Q Consensus 259 ~l~~c~-~~l~~-i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~ 334 (565)
++++|. ..+.. -.+ .+++|+.|++++|.+... .......+..+++|+.|++.+|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~---------------------~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL---------------------NDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS---------------------TTHHHHHHTTCSSCCEETTEETT
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch---------------------HHHHHHHHHhCccCcEecCCCCC
Confidence 666653 11111 112 445555555555543100 01112356778888888888764
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.74 E-value=1.4e-08 Score=98.38 Aligned_cols=147 Identities=20% Similarity=0.113 Sum_probs=103.9
Q ss_pred CCcEEEEEEeCCCCcCccccccc-CcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTL-PQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC 230 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c 230 (565)
.+++.|++... ....+ +..+..+++|++|+|++|.+.. +..+..+++|++|+|+++.++.- ....+..+
T Consensus 35 ~~l~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l 106 (251)
T 3m19_A 35 ADTEKLDLQST-------GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHL 106 (251)
T ss_dssp TTCCEEECTTS-------CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTC
T ss_pred CCCCEEEccCC-------CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhccc
Confidence 47788877652 12223 3356678999999999998887 44578899999999999988421 12345678
Q ss_pred cCCceeEeeecCCCccc--ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452 231 HFLEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR 306 (565)
Q Consensus 231 p~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 306 (565)
++|++|+|++|...... .+..+++|+.|++++|. ..+..-.+ .+++|++|++++|.+ .......+..+++|+.|+
T Consensus 107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC-CccCHHHHhCCCCCCEEE
Confidence 99999999998653211 23457999999999985 22222224 678999999999987 333444677888999888
Q ss_pred ccc
Q 008452 307 AFN 309 (565)
Q Consensus 307 ~~~ 309 (565)
+.+
T Consensus 186 l~~ 188 (251)
T 3m19_A 186 LFG 188 (251)
T ss_dssp CCS
T ss_pred eeC
Confidence 763
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.72 E-value=2.1e-08 Score=90.66 Aligned_cols=128 Identities=18% Similarity=0.026 Sum_probs=98.2
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL 233 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L 233 (565)
+++++|++.... .....+|..+..+++|++|+|++|.+.....+..+++|++|+|++|.+... +..++..+++|
T Consensus 24 ~~L~~L~l~~n~-----l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCK-----SNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCB-----CBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTC
T ss_pred ccCCEEECCCCC-----CChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCC
Confidence 578888887621 111367777788999999999999887766778899999999999998432 45667789999
Q ss_pred ceeEeeecCCCc--c-cccccCcccceeEccccc-ccccc---hhh-cCccccEeeecCCCC
Q 008452 234 EDLNFFECLGLK--L-LCISGAHKLKILTMETLS-SELKG---VKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 234 e~L~L~~c~~l~--~-l~i~~~~~L~~L~l~~c~-~~l~~---i~~-~~p~L~~L~l~~~~~ 287 (565)
+.|++++|.... . -.+..+++|+.|++++|. ..... -.+ .+|+|++|+++++..
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 999999996533 1 234568999999999996 33322 123 789999999998875
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.71 E-value=2e-08 Score=88.91 Aligned_cols=105 Identities=21% Similarity=0.101 Sum_probs=63.2
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL 233 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L 233 (565)
+++++|++... . .....+|..+..+++|++|++++|.+.....+..+++|++|+|++|.++.. +...+..+++|
T Consensus 17 ~~l~~L~l~~n--~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNS--R---SNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTC--B---CBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTC
T ss_pred ccCeEEEccCC--c---CChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCC
Confidence 35666666542 1 111356666666777777777777766555566677777777777777332 44555667777
Q ss_pred ceeEeeecCCCcc---cccccCcccceeEccccc
Q 008452 234 EDLNFFECLGLKL---LCISGAHKLKILTMETLS 264 (565)
Q Consensus 234 e~L~L~~c~~l~~---l~i~~~~~L~~L~l~~c~ 264 (565)
++|++++|..... -.+..+++|+.|++++|.
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 7777777754221 123345666666666664
No 104
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.70 E-value=7.8e-09 Score=74.24 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=33.4
Q ss_pred CCcCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhh
Q 008452 30 MDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFH 67 (565)
Q Consensus 30 ~D~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw 67 (565)
.+.++.||+||+.+||++|+.+|+++++.|||+|+++.
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 34689999999999999999999999999999999763
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.69 E-value=4e-09 Score=93.44 Aligned_cols=101 Identities=17% Similarity=0.050 Sum_probs=66.8
Q ss_pred CCccEEEecCccCC--C-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc--cccCccccee
Q 008452 184 NFLTHLRLAGCKLE--Q-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC--ISGAHKLKIL 258 (565)
Q Consensus 184 ~~L~~L~L~~c~l~--~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~--i~~~~~L~~L 258 (565)
++|+.|++++|.+. . +..+..+++|++|+|++|.+++- ..+..+++|+.|++++|.....+. +..+++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 68999999999887 3 66668899999999999988432 446678888888888876533221 1225677777
Q ss_pred Eccccc-ccccc-hhh-cCccccEeeecCCCC
Q 008452 259 TMETLS-SELKG-VKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 259 ~l~~c~-~~l~~-i~~-~~p~L~~L~l~~~~~ 287 (565)
++++|. ..+.. -.+ .+++|++|++++|.+
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 777664 11111 112 556666666666654
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.69 E-value=3.5e-08 Score=106.89 Aligned_cols=174 Identities=15% Similarity=0.030 Sum_probs=105.3
Q ss_pred hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452 153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF 232 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~ 232 (565)
..+++.|++... ....+|..++ ++|++|+|++|.+...+ ..+++|++|+|++|.++. +.. +. .+
T Consensus 58 ~~~L~~L~Ls~n-------~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~ 121 (571)
T 3cvr_A 58 INQFSELQLNRL-------NLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--AS 121 (571)
T ss_dssp HTTCSEEECCSS-------CCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TT
T ss_pred cCCccEEEeCCC-------CCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cC
Confidence 357888887762 2334666554 68899999998887633 567889999998888732 222 22 28
Q ss_pred CceeEeeecCCCcccccccCcccceeEcccccccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccch
Q 008452 233 LEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLG 312 (565)
Q Consensus 233 Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~ 312 (565)
|+.|+|++|.... +.- .+++|+.|++++|. +..+...+++|++|++++|.+.. .+. +. ++|+.|++++..-
T Consensus 122 L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~--l~~lp~~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 122 LKHLDVDNNQLTM-LPE-LPALLEYINADNNQ--LTMLPELPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCC
T ss_pred CCEEECCCCcCCC-CCC-cCccccEEeCCCCc--cCcCCCcCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCC
Confidence 8888888886432 332 46888888888884 33343366788888888888633 222 43 6777776653322
Q ss_pred HHHHHHhcCCCCc-------ceeecccccccccccc---cCCcccEEeecCCc
Q 008452 313 QEFCTLISKFPLL-------EDLSLFACSSFERITI---SSNQLKHLSLVHCA 355 (565)
Q Consensus 313 ~~l~~l~~~~~~L-------~~L~L~~C~~~~~l~~---~~~~L~~L~L~~C~ 355 (565)
..++. +.. +| +.|+|++|. +..++. ..++|+.|+|++++
T Consensus 193 ~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 193 ESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSS
T ss_pred Cchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCc
Confidence 22222 111 44 777777652 222321 23455666655553
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.66 E-value=3e-08 Score=101.09 Aligned_cols=33 Identities=21% Similarity=0.065 Sum_probs=15.9
Q ss_pred CccEEEecCccCCC-CC-cccCCCcCcEEEcCCee
Q 008452 185 FLTHLRLAGCKLEQ-PC-YAMCFLSLKKLHLYGVY 217 (565)
Q Consensus 185 ~L~~L~L~~c~l~~-~~-~~~~l~~Lk~L~L~~~~ 217 (565)
++++|+|++|.+.. ++ .+.++++|++|+|++|.
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC
Confidence 45555555554444 22 24455555555555544
No 108
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.63 E-value=3.8e-08 Score=89.10 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=73.9
Q ss_pred ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCee-echHHHHHHHhc---CcCCceeEeeecCCCcc
Q 008452 173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVY-ITEQMVQKLLHE---CHFLEDLNFFECLGLKL 246 (565)
Q Consensus 173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~-~~~~~l~~ll~~---cp~Le~L~L~~c~~l~~ 246 (565)
...+|..-...-.|++|+|++|.+.+ .....+|++|++|+|++|. ++|.++..+... |+.|++|+|++|..+++
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 34566543344589999999998876 4556789999999999997 599999998763 88999999999998776
Q ss_pred c---ccccCcccceeEccccc
Q 008452 247 L---CISGAHKLKILTMETLS 264 (565)
Q Consensus 247 l---~i~~~~~L~~L~l~~c~ 264 (565)
- .+..+++|++|++++|.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHHhcCCCCCEEECCCCC
Confidence 3 34458999999999997
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.58 E-value=6.2e-08 Score=94.64 Aligned_cols=139 Identities=14% Similarity=0.064 Sum_probs=102.8
Q ss_pred hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452 153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF 232 (565)
Q Consensus 153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~ 232 (565)
..++++|++... ....+| .+..+++|++|+|++|.+...+.+..+++|++|+|++|.+++ +.. +.. ++
T Consensus 40 l~~L~~L~l~~n-------~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~--l~~-~~~-~~ 107 (263)
T 1xeu_A 40 LSGVQNFNGDNS-------NIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN--LNG-IPS-AC 107 (263)
T ss_dssp HTTCSEEECTTS-------CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC--CTT-CCC-SS
T ss_pred cCcCcEEECcCC-------Ccccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC--cCc-ccc-Cc
Confidence 468899888762 223455 567789999999999999883338899999999999998832 122 222 89
Q ss_pred CceeEeeecCCCcccccccCcccceeEcccccccccch-hh-cCccccEeeecCCCCCCCCceeeccccccccccccc
Q 008452 233 LEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF 308 (565)
Q Consensus 233 Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~ 308 (565)
|+.|++++|.....-.+..+++|+.|++++|. +..+ .+ .+++|+.|++++|.+... ..+..+++|+.|++.
T Consensus 108 L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~--i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNK--LKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLT 180 (263)
T ss_dssp CCEEECCSSCCSBSGGGTTCTTCCEEECTTSC--CCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEE
T ss_pred ccEEEccCCccCCChhhcCcccccEEECCCCc--CCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCC
Confidence 99999999965332245568999999999985 3322 23 789999999999987322 457788888888775
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.58 E-value=4.9e-08 Score=92.64 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=60.5
Q ss_pred cccCcccccCCCccEEEecCccCCC-C--CcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--c
Q 008452 174 YTLPQTVFSANFLTHLRLAGCKLEQ-P--CYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--C 248 (565)
Q Consensus 174 ~~lp~~l~~~~~L~~L~L~~c~l~~-~--~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~ 248 (565)
..+|..+. +.+++|.|++|.+.. + ..+..+++|++|+|+++.++.- ....+.++++|++|+|++|...... .
T Consensus 24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 100 (220)
T 2v70_A 24 NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLENVQHKM 100 (220)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccCccCHhH
Confidence 34554432 356777777777765 2 2356777777777777766211 0123456677777777776542211 1
Q ss_pred cccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452 249 ISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 249 i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
+..+++|+.|+++++. ..+..-.+ .+++|+.|++++|.+
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence 3345666666666663 11111122 455666666666554
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.55 E-value=9.1e-08 Score=89.69 Aligned_cols=139 Identities=19% Similarity=0.140 Sum_probs=98.2
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcc-cccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQT-VFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC 230 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c 230 (565)
.++++|++... ....+|.. +..+++|++|+|++|.+.. +..+..+++|++|+|+++.++.- ....+..+
T Consensus 28 ~~l~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l 99 (208)
T 2o6s_A 28 AQTTYLDLETN-------SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKL 99 (208)
T ss_dssp TTCSEEECCSS-------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTC
T ss_pred CCCcEEEcCCC-------ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCc
Confidence 47888888762 22345554 4578999999999998887 33467899999999999988321 12335789
Q ss_pred cCCceeEeeecCCCccc--ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452 231 HFLEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR 306 (565)
Q Consensus 231 p~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 306 (565)
++|++|++++|...... .+..+++|+.|+++++. ..+..-.+ .+++|++|++++|.+ .+.+++|+.|+
T Consensus 100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~ 171 (208)
T 2o6s_A 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLS 171 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHH
T ss_pred cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHH
Confidence 99999999998653221 24457999999999985 22222223 689999999999975 24567777665
Q ss_pred cc
Q 008452 307 AF 308 (565)
Q Consensus 307 ~~ 308 (565)
..
T Consensus 172 ~~ 173 (208)
T 2o6s_A 172 EW 173 (208)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.54 E-value=2e-07 Score=101.02 Aligned_cols=131 Identities=15% Similarity=0.011 Sum_probs=93.3
Q ss_pred CCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEccc
Q 008452 184 NFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMET 262 (565)
Q Consensus 184 ~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~ 262 (565)
.+|+.|+|++|.+.. +... +++|++|+|++|.++ .+. ..+++|+.|++++|.... +.. -..+|+.|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI--SLP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCC
Confidence 489999999999887 4333 589999999999984 233 568999999999996533 322 124999999999
Q ss_pred ccccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccc
Q 008452 263 LSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFAC 333 (565)
Q Consensus 263 c~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C 333 (565)
|. +..+...+++|+.|++++|.+.. .+. .+++|+.|++++..-..++. +. ++|+.|+|++|
T Consensus 130 N~--l~~lp~~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 130 NQ--LTMLPELPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp SC--CSCCCCCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS
T ss_pred Cc--CCCCCCcCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC
Confidence 85 33333378899999999998732 222 46778877776433222333 33 78888888876
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.52 E-value=1.3e-07 Score=89.66 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=71.7
Q ss_pred ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cc
Q 008452 173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LC 248 (565)
Q Consensus 173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~ 248 (565)
...+|..+. ++|+.|+|++|.+.. +..+..+++|++|+|+++.++.- ....+.++++|++|+|++|..... -.
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence 345555443 678888888888776 34677888888888888877321 122356678888888888754221 11
Q ss_pred cccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452 249 ISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 249 i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
+..+++|+.|+++++. ..+..-.+ .+++|++|++++|.+
T Consensus 100 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence 3346778888887774 22211223 567777777777765
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.52 E-value=1.7e-07 Score=89.44 Aligned_cols=110 Identities=17% Similarity=0.061 Sum_probs=72.5
Q ss_pred ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--c
Q 008452 173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--C 248 (565)
Q Consensus 173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~ 248 (565)
...+|..+. ++|++|+|++|.+.. +..+..+++|++|+|+++.+..- ....+..+++|+.|+|++|...... .
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCCccChhH
Confidence 445565443 788999999988877 45577888899999988887211 1123567888888888888542211 1
Q ss_pred cccCcccceeEcccccccccch--h-hcCccccEeeecCCCC
Q 008452 249 ISGAHKLKILTMETLSSELKGV--K-IVASSLQQLTLQFPFE 287 (565)
Q Consensus 249 i~~~~~L~~L~l~~c~~~l~~i--~-~~~p~L~~L~l~~~~~ 287 (565)
+..+++|+.|+++++. +..+ . ..+++|+.|++++|.+
T Consensus 108 ~~~l~~L~~L~Ls~N~--l~~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNK--LTELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp TTTCTTCCEEECCSSC--CCSCCTTGGGCTTCSEEECCSSCC
T ss_pred hCcchhhCeEeccCCc--ccccCcccccCCCCCEEECCCCcC
Confidence 3446778888887774 3333 1 2567777777777765
No 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.51 E-value=1.6e-07 Score=95.75 Aligned_cols=195 Identities=10% Similarity=-0.025 Sum_probs=126.0
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcc-cccCCCccEEEecCccCCC---CCcccCCCcCcEE-EcCCeeechHHHHHHHh
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQT-VFSANFLTHLRLAGCKLEQ---PCYAMCFLSLKKL-HLYGVYITEQMVQKLLH 228 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~c~l~~---~~~~~~l~~Lk~L-~L~~~~~~~~~l~~ll~ 228 (565)
+++++|+|.. .....+|.. +..+++|++|+|++|.+.. ...+.++++|+++ .+..+.+.. .....+.
T Consensus 30 ~~l~~L~Ls~-------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~ 101 (350)
T 4ay9_X 30 RNAIELRFVL-------TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQ 101 (350)
T ss_dssp TTCSEEEEES-------CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBC
T ss_pred CCCCEEEccC-------CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhh
Confidence 5899999987 344567765 4568999999999998754 3356788888764 444454411 0122357
Q ss_pred cCcCCceeEeeecCCCcc--cccccCcccceeEcccccccccchh---h-c-CccccEeeecCCCCCCCCceeecccccc
Q 008452 229 ECHFLEDLNFFECLGLKL--LCISGAHKLKILTMETLSSELKGVK---I-V-ASSLQQLTLQFPFEGQGTPVVDIAVCPN 301 (565)
Q Consensus 229 ~cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c~~~l~~i~---~-~-~p~L~~L~l~~~~~~~~~~~~~l~~~~~ 301 (565)
.+++|+.|++.+|..... .......++..|.+.++. .+..+. + . ...++.|+++++.+. ..+..+....+
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~ 178 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQ 178 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCC--EECTTSSTTEE
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhcccccccc--CCChhhccccc
Confidence 799999999999965322 222224677778887765 333332 2 2 346889999998862 22223334556
Q ss_pred cccccccc-cchHHH-HHHhcCCCCcceeecccccccccccc-cCCcccEEeecCCcChhhc
Q 008452 302 LKKFRAFN-LLGQEF-CTLISKFPLLEDLSLFACSSFERITI-SSNQLKHLSLVHCASLKAI 360 (565)
Q Consensus 302 L~~L~~~~-i~~~~l-~~l~~~~~~L~~L~L~~C~~~~~l~~-~~~~L~~L~L~~C~~L~~L 360 (565)
|+.|.+.+ .....+ .+.+.++++|+.|+|+++ .++.++. ...+|++|.+.++.+++.+
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCC
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcC
Confidence 77666542 212222 235678899999999986 4555553 3578888888888777765
No 116
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.50 E-value=2.4e-07 Score=101.62 Aligned_cols=121 Identities=17% Similarity=0.107 Sum_probs=49.6
Q ss_pred CccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc---ccccCcccceeE
Q 008452 185 FLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL---CISGAHKLKILT 259 (565)
Q Consensus 185 ~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l---~i~~~~~L~~L~ 259 (565)
++++|+|++|.+.. +..+.++++|++|+|++|.++.- -...+.++++|++|+|++|.. +.+ .+.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEEE
Confidence 44555555554444 22344455555555555444100 001233445555555555432 211 123344555555
Q ss_pred ccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccc
Q 008452 260 METLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRA 307 (565)
Q Consensus 260 l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~ 307 (565)
+++|. ..+....+ .+++|++|++++|.+.....+..++.+++|+.|++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence 55442 11111112 34455555555544322223333444444444443
No 117
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.49 E-value=1.6e-07 Score=103.02 Aligned_cols=241 Identities=18% Similarity=0.090 Sum_probs=135.3
Q ss_pred ccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc----cccccCcccc
Q 008452 181 FSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL----LCISGAHKLK 256 (565)
Q Consensus 181 ~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~----l~i~~~~~L~ 256 (565)
..+.+|+.|++.+|.+.. .....++.|+.+.+..+...... -...+|.|+.|+++.+..... .....+.+|+
T Consensus 325 ~~~~~L~~L~l~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 400 (635)
T 4g8a_A 325 SYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLK 400 (635)
T ss_dssp GSCCCCSEEEEESCEESS-CCCCBCTTCCEEEEESCCSCCBC---CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCC
T ss_pred ccchhhhhhhcccccccC-cCcccchhhhhcccccccCCCCc---ccccccccccchhhccccccccccccchhhhhhhh
Confidence 345678888888887665 22345777888888777652110 123578888888887754221 1122357788
Q ss_pred eeEccccc-ccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccc-hHHHHHHhcCCCCcceeeccccc
Q 008452 257 ILTMETLS-SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL-GQEFCTLISKFPLLEDLSLFACS 334 (565)
Q Consensus 257 ~L~l~~c~-~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~-~~~l~~l~~~~~~L~~L~L~~C~ 334 (565)
.|++..+. .........+++|+.+++.++..........+..+++++.+++.... .......+..+++|+.|+|++|.
T Consensus 401 ~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~ 480 (635)
T 4g8a_A 401 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 480 (635)
T ss_dssp EEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred hhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc
Confidence 88877764 11111223677888888877654333333445666677766655321 12223456677888888888875
Q ss_pred cccccc----ccCCcccEEeecCCcChhhccccCCCccceeEecCCCCceecccccceeeecccccCCCCcccchHHHHH
Q 008452 335 SFERIT----ISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPIISINSQCSWNIHFNCQDDHDGGWFLNFKDFL 410 (565)
Q Consensus 335 ~~~~l~----~~~~~L~~L~L~~C~~L~~L~i~~p~L~~~~~~g~~~~~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l 410 (565)
..+.+. ...++|+.|+|++| +++.+.-. .+....+|+.++|..|...+-.+. .+
T Consensus 481 ~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~--------------~f~~l~~L~~L~Ls~N~l~~l~~~-------~~ 538 (635)
T 4g8a_A 481 FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT--------------AFNSLSSLQVLNMSHNNFFSLDTF-------PY 538 (635)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTS-CCCEECTT--------------TTTTCTTCCEEECTTSCCCBCCCG-------GG
T ss_pred cccccCchhhhhccccCEEECCCC-ccCCcChH--------------HHcCCCCCCEEECCCCcCCCCChh-------HH
Confidence 443321 12356666666665 23322100 112223555566654332223333 46
Q ss_pred hhCCCCceEEEEEecccccccccccccccCCCCCccceeEEE
Q 008452 411 RISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLR 452 (565)
Q Consensus 411 ~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~ 452 (565)
+++++|++|+++.+.... ..|..|.. .|.+|+.|.+.
T Consensus 539 ~~l~~L~~L~Ls~N~l~~-~~~~~l~~----l~~~L~~L~L~ 575 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIMT-SKKQELQH----FPSSLAFLNLT 575 (635)
T ss_dssp TTCTTCCEEECTTSCCCB-CCSSCTTC----CCTTCCEEECT
T ss_pred hCCCCCCEEECCCCcCCC-CCHHHHHh----hhCcCCEEEee
Confidence 778889988888777441 33555554 13457777764
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.49 E-value=1.1e-07 Score=86.57 Aligned_cols=104 Identities=15% Similarity=-0.040 Sum_probs=62.3
Q ss_pred cccCCCccEEEecCccCCCCCcccCC-CcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc---cccCccc
Q 008452 180 VFSANFLTHLRLAGCKLEQPCYAMCF-LSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC---ISGAHKL 255 (565)
Q Consensus 180 l~~~~~L~~L~L~~c~l~~~~~~~~l-~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~---i~~~~~L 255 (565)
..++.+|++|.+++|.+...+.+..+ ++|+.|+|++|.+++- ..+..+++|+.|++++|... .+. +..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 34566788888888877663333333 4788888888777321 23556777777777777542 221 1335677
Q ss_pred ceeEccccc-ccccch-hh-cCccccEeeecCCCC
Q 008452 256 KILTMETLS-SELKGV-KI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 256 ~~L~l~~c~-~~l~~i-~~-~~p~L~~L~l~~~~~ 287 (565)
+.|++++|. ..+..+ .+ .+++|+.|++++|.+
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 777777664 222221 12 566777777777664
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.48 E-value=1.7e-07 Score=88.86 Aligned_cols=144 Identities=14% Similarity=0.065 Sum_probs=88.0
Q ss_pred cEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcccceeEcccc
Q 008452 187 THLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHKLKILTMETL 263 (565)
Q Consensus 187 ~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c 263 (565)
+.++++++.+.. |.. -.+.+++|+|+++.++.-.....+..+++|+.|+|++|..... -.+..+++|+.|+++++
T Consensus 14 ~~l~~s~n~l~~iP~~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccC--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 577777777665 322 2345678888887773221112356678888888887754221 12445678888888877
Q ss_pred c-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHH-HHHhcCCCCcceeecccc
Q 008452 264 S-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEF-CTLISKFPLLEDLSLFAC 333 (565)
Q Consensus 264 ~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l-~~l~~~~~~L~~L~L~~C 333 (565)
. ..+..-.+ .+++|++|++++|.+ ....+..+..+++|+.|++.+..-..+ +..+..+++|+.|+|.++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCC-CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcC-CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 4 22222223 577888888888776 333345567777788777664322222 345667778888888774
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.46 E-value=5.5e-09 Score=97.44 Aligned_cols=113 Identities=19% Similarity=0.116 Sum_probs=75.7
Q ss_pred ccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccC
Q 008452 173 TYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGA 252 (565)
Q Consensus 173 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~ 252 (565)
...+|..+..+++|++|+|++|.+...+.+..+++|++|+|++|.++ .+...+..+|+|+.|++++|.....-.+..+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l 114 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKL 114 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccC
Confidence 34455567778888888888887777336777888888888888874 2344556678888888888854331133346
Q ss_pred cccceeEccccc-ccccch-hh-cCccccEeeecCCCC
Q 008452 253 HKLKILTMETLS-SELKGV-KI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 253 ~~L~~L~l~~c~-~~l~~i-~~-~~p~L~~L~l~~~~~ 287 (565)
++|+.|++++|. ..+..+ .+ .+++|++|++++|.+
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 788888888774 222221 22 677788888877764
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.46 E-value=8.3e-08 Score=87.53 Aligned_cols=132 Identities=15% Similarity=0.044 Sum_probs=85.2
Q ss_pred CcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEccccc-ccccchh-hcCccc
Q 008452 200 CYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS-SELKGVK-IVASSL 277 (565)
Q Consensus 200 ~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~-~~l~~i~-~~~p~L 277 (565)
+.+..+++|++|+|+++.++. +..+...+|+|+.|++++|.....-.+..+++|+.|++++|. ..+..-. ..+++|
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HhcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 456678999999999998842 233445566999999999965332245567899999999985 2222111 378999
Q ss_pred cEeeecCCCCCCCCceeecccccccccccccccchHHH----HHHhcCCCCcceeecccc
Q 008452 278 QQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEF----CTLISKFPLLEDLSLFAC 333 (565)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l----~~l~~~~~~L~~L~L~~C 333 (565)
++|++++|.+...+....++.+++|+.|++.+..-..+ ...+..+++|+.|+++.+
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 99999999863222212556667777666653221111 223566677777777664
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.46 E-value=2e-07 Score=88.44 Aligned_cols=126 Identities=18% Similarity=0.166 Sum_probs=93.2
Q ss_pred CCcEEEEEEeCCCCcCcccccccCc-ccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQ-TVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC 230 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c 230 (565)
.++++|++... ....+|. .+..+++|++|+|++|.+.. +..+.++++|++|+|+++.++. ....++.++
T Consensus 32 ~~l~~L~l~~n-------~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l 103 (220)
T 2v9t_B 32 ETITEIRLEQN-------TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGL 103 (220)
T ss_dssp TTCCEEECCSS-------CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTC
T ss_pred cCCCEEECCCC-------cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCC
Confidence 47888888762 2334444 45668999999999998887 5678899999999999998831 112345779
Q ss_pred cCCceeEeeecCCCcc--cccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452 231 HFLEDLNFFECLGLKL--LCISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 231 p~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
++|+.|+|++|..... -.+..+++|+.|+++++. ..+..-.+ .+++|++|++++|.+
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9999999999965322 234557999999999985 22222223 578999999999885
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.38 E-value=2.2e-07 Score=95.16 Aligned_cols=110 Identities=16% Similarity=0.095 Sum_probs=63.6
Q ss_pred cccCcccccCCCccEEEecCccCCC--CCccc-CCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc---
Q 008452 174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAM-CFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--- 247 (565)
Q Consensus 174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~-~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--- 247 (565)
..+|..+. +.++.|+|++|.+.. +..+. .+++|++|+|+++.++.-. ...+..+++|++|+|++|.. +.+
T Consensus 31 ~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~ 106 (361)
T 2xot_A 31 PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHL-HTLDEF 106 (361)
T ss_dssp SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CEECTT
T ss_pred CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcC-CcCCHH
Confidence 34554432 356777777777766 23344 6777777777777662110 12345677777777777753 222
Q ss_pred ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452 248 CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 248 ~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
.+..+++|+.|++++|. ..+..-.+ .+++|+.|++++|.+
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence 23446777777777764 11212223 567777777777765
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.36 E-value=6.1e-07 Score=85.51 Aligned_cols=126 Identities=18% Similarity=0.005 Sum_probs=92.5
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-C-CcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-P-CYAMCFLSLKKLHLYGVYITEQMVQKLLHECH 231 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~-~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp 231 (565)
.+++.|+|... ......|..+..+++|++|+|++|.+.. + ..+..+++|++|+|++|.++.- ....+..++
T Consensus 40 ~~L~~L~Ls~n------~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDN------QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLV 112 (229)
T ss_dssp TTCSEEECCSS------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT
T ss_pred CCCCEEEcCCC------ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcch
Confidence 68899988762 1122235556678999999999999877 3 4468899999999999988321 123456799
Q ss_pred CCceeEeeecCCCccc--ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452 232 FLEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 232 ~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
+|+.|+|++|... .+ .+..+++|+.|+++++. ..+..-.+ .+++|+.|++++|.+
T Consensus 113 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 113 HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred hhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 9999999999653 33 23457999999999985 22222223 678999999999985
No 125
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=3.2e-07 Score=82.98 Aligned_cols=93 Identities=12% Similarity=0.171 Sum_probs=64.2
Q ss_pred CCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcccccccccchhh---cCccccEe
Q 008452 204 CFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKI---VASSLQQL 280 (565)
Q Consensus 204 ~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~---~~p~L~~L 280 (565)
.-..|+.|+|++|.+++.++..+ ++|++|++|+|++|..+++-.+. .+.- .+++|++|
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~------------------~L~~~~~~~~~L~~L 119 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLE------------------RLSQLENLQKSMLEM 119 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHH------------------HHHTCHHHHHHCCEE
T ss_pred CCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHH------------------HHHhcccccCCCCEE
Confidence 34579999999999988888775 78999999999999887653322 1111 12345555
Q ss_pred eecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccccccccc
Q 008452 281 TLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFER 338 (565)
Q Consensus 281 ~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~ 338 (565)
++++|. ++++..+..+ ..+++|+.|+|++|+.++.
T Consensus 120 ~Ls~C~----------------------~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 120 EIISCG----------------------NVTDKGIIAL-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp EEESCT----------------------TCCHHHHHHG-GGCTTCCEEEEESCTTCCC
T ss_pred EcCCCC----------------------cCCHHHHHHH-hcCCCCCEEECCCCCCCCc
Confidence 555444 4677777665 3578888888887766654
No 126
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.34 E-value=9.3e-08 Score=98.27 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=15.9
Q ss_pred CcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeec
Q 008452 206 LSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFEC 241 (565)
Q Consensus 206 ~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c 241 (565)
++|++|+|++|.+++..+..+...+++|++|+|++|
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 344444444444444444444444444444444444
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.31 E-value=3.7e-07 Score=93.42 Aligned_cols=144 Identities=15% Similarity=0.065 Sum_probs=100.4
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccc--cCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhc
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVF--SANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHE 229 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~--~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~ 229 (565)
..++.|+|+. .....++...+ .+++|++|+|++|.+.. +..+..+++|+.|+|++|.+..- ....+..
T Consensus 39 ~~l~~L~Ls~-------N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~ 110 (361)
T 2xot_A 39 SYTALLDLSH-------NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSD 110 (361)
T ss_dssp TTCSEEECCS-------SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTT
T ss_pred CCCCEEECCC-------CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCC
Confidence 4678888776 23344555444 78999999999999887 44688999999999999988321 1234678
Q ss_pred CcCCceeEeeecCCCcc--cccccCcccceeEcccccccccchh-------hcCccccEeeecCCCCCCCCceeeccccc
Q 008452 230 CHFLEDLNFFECLGLKL--LCISGAHKLKILTMETLSSELKGVK-------IVASSLQQLTLQFPFEGQGTPVVDIAVCP 300 (565)
Q Consensus 230 cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c~~~l~~i~-------~~~p~L~~L~l~~~~~~~~~~~~~l~~~~ 300 (565)
+++|+.|+|++|..... -.+..+++|+.|++++|. +..+. ..+++|+.|++++|.+ .......+..++
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~ 187 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ--ISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLP 187 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CCSCCGGGTC----CTTCCEEECCSSCC-CCCCHHHHHHSC
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc--CCeeCHHHhcCcccCCcCCEEECCCCCC-CccCHHHhhhcc
Confidence 99999999999975321 235568999999999985 33332 2478999999999987 332333445555
Q ss_pred cc--cccccc
Q 008452 301 NL--KKFRAF 308 (565)
Q Consensus 301 ~L--~~L~~~ 308 (565)
.+ +.|++.
T Consensus 188 ~~~l~~l~l~ 197 (361)
T 2xot_A 188 AWVKNGLYLH 197 (361)
T ss_dssp HHHHTTEECC
T ss_pred HhhcceEEec
Confidence 43 455544
No 128
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.27 E-value=6.9e-06 Score=83.76 Aligned_cols=186 Identities=14% Similarity=0.122 Sum_probs=107.4
Q ss_pred CCccEEEEEEeccCCCCCchHHHHHHHH-HHhCCcEEEEEEeCCCC---cCcccccccCcccccCCCccEEEecCcc-CC
Q 008452 123 FSIQKLRIVIGVLDPEHLPPLLDKWIAL-AIENGVKELDFQILPDI---KDYVHTYTLPQTVFSANFLTHLRLAGCK-LE 197 (565)
Q Consensus 123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~-~~~~~l~~L~L~~~~~~---~~~~~~~~lp~~l~~~~~L~~L~L~~c~-l~ 197 (565)
..++.+.+....++.......++.++.. ...++|++|.+...... ..+.....++..+..+++|++|.|++|. +.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 4577887775432101111344445432 23479999988542100 0001112355555678999999999973 33
Q ss_pred CCCcccCCCcCcEEEcCCeeechHHHHHHHh-cCcCCceeEeeecCC-------Cccc----ccccCcccceeEccccc-
Q 008452 198 QPCYAMCFLSLKKLHLYGVYITEQMVQKLLH-ECHFLEDLNFFECLG-------LKLL----CISGAHKLKILTMETLS- 264 (565)
Q Consensus 198 ~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~-~cp~Le~L~L~~c~~-------l~~l----~i~~~~~L~~L~l~~c~- 264 (565)
.++ ...++|++|+|..+.+++..+..+.. .+|+|+.|+|..+.. +..+ ....+|+|+.|.+.+|.
T Consensus 187 l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 187 IGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp CCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred ecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 222 24899999999999887777777653 799999999964311 1111 11235778888877764
Q ss_pred c--cccchhh--cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHH---hcCCCCcceeecccc
Q 008452 265 S--ELKGVKI--VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTL---ISKFPLLEDLSLFAC 333 (565)
Q Consensus 265 ~--~l~~i~~--~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l---~~~~~~L~~L~L~~C 333 (565)
. ....+.. .+|+|++|+++.|. +++.....+ +.++++|+.|+|++|
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~-----------------------L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGV-----------------------LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSC-----------------------CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred chHHHHHHHhCccCCCCCEEECCCCC-----------------------CChHHHHHHHhhcccCCcceEEECCCC
Confidence 0 1111111 35566666665554 333333332 245678888888776
No 129
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.19 E-value=1.5e-06 Score=88.71 Aligned_cols=131 Identities=17% Similarity=0.128 Sum_probs=78.5
Q ss_pred HHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEccccc---ccccchhh-cCccccEeeecCC--CCCCCC-c--
Q 008452 222 MVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS---SELKGVKI-VASSLQQLTLQFP--FEGQGT-P-- 292 (565)
Q Consensus 222 ~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~---~~l~~i~~-~~p~L~~L~l~~~--~~~~~~-~-- 292 (565)
.+..++..+|+|++|.|.+|..+....+. .++|++|.+..|. ..+..+.. .+|+|++|+++.+ ..+... .
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 46678899999999999988543322233 5899999999885 22333443 6899999998532 111111 1
Q ss_pred ---eeecccccccccccccc--cchHHHHHHh--cCCCCcceeeccccccccc-----ccc---cCCcccEEeecCC
Q 008452 293 ---VVDIAVCPNLKKFRAFN--LLGQEFCTLI--SKFPLLEDLSLFACSSFER-----ITI---SSNQLKHLSLVHC 354 (565)
Q Consensus 293 ---~~~l~~~~~L~~L~~~~--i~~~~l~~l~--~~~~~L~~L~L~~C~~~~~-----l~~---~~~~L~~L~L~~C 354 (565)
......+++|+.|.+.+ +++.....++ ..+++|+.|+|+.+. ++. +.. .+++|+.|+|++|
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC
Confidence 11123567888777753 3433333333 356788888887652 222 221 2356677766655
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.18 E-value=1.4e-06 Score=80.53 Aligned_cols=112 Identities=20% Similarity=0.113 Sum_probs=75.8
Q ss_pred ccccCcccccCCCccEEEecCccCCC-CC--cccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--
Q 008452 173 TYTLPQTVFSANFLTHLRLAGCKLEQ-PC--YAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL-- 247 (565)
Q Consensus 173 ~~~lp~~l~~~~~L~~L~L~~c~l~~-~~--~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l-- 247 (565)
...+|..+.. +|++|.|+++.+.. ++ .+..+++|++|+|+++.++.- ....+.++++|++|+|++|......
T Consensus 20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 96 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcCCccCHH
Confidence 3456665543 88999999988877 33 377889999999999887321 1233567888999999888653221
Q ss_pred ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452 248 CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 248 ~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
.+..+++|+.|+++++. .++..-.+ .+++|++|++++|.+
T Consensus 97 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 24456888888888875 22222223 567888888888775
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.16 E-value=1.9e-06 Score=93.55 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=42.4
Q ss_pred HhcCcCCceeEeeecCCCccc--ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCc-eeecccccc
Q 008452 227 LHECHFLEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTP-VVDIAVCPN 301 (565)
Q Consensus 227 l~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~-~~~l~~~~~ 301 (565)
+..+++|+.|+|++|... .+ .+..+++|+.|++++|. .++. .+ .+++|+.|++++|.+ .... +..++.+++
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l-~~~~~p~~l~~l~~ 534 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRL-QQSAAIQPLVSCPR 534 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCC-CSSSTTGGGGGCTT
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCC-CCCCCcHHHhcCCC
Confidence 344444444444444321 11 22234444445444443 1111 22 445555555555554 2211 344555555
Q ss_pred cccccccccch----HHHHHHhcCCCCcceeec
Q 008452 302 LKKFRAFNLLG----QEFCTLISKFPLLEDLSL 330 (565)
Q Consensus 302 L~~L~~~~i~~----~~l~~l~~~~~~L~~L~L 330 (565)
|+.|++++..- .....+...+|+|+.|++
T Consensus 535 L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 55555442211 112233445667776653
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=7.3e-06 Score=82.46 Aligned_cols=196 Identities=13% Similarity=0.033 Sum_probs=115.0
Q ss_pred CCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCC--c----Ccc-------cccccCcccc-c------
Q 008452 123 FSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDI--K----DYV-------HTYTLPQTVF-S------ 182 (565)
Q Consensus 123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~--~----~~~-------~~~~lp~~l~-~------ 182 (565)
..|+.+.+.... ....+ +++... .++++.|+|+...-. . ... ..-.+|...| .
T Consensus 25 ~~l~~L~l~g~i-----~~~~~-~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGKL-----NAEDF-RHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEEE-----CHHHH-HHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEE
T ss_pred CceeEEEEeccc-----cHHHH-HHHHHh-hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccc
Confidence 357778887653 12222 233321 468999999753100 0 000 0013444433 4
Q ss_pred --CCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeee---chHHHHHHHhcCcCCceeEeee---------------
Q 008452 183 --ANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI---TEQMVQKLLHECHFLEDLNFFE--------------- 240 (565)
Q Consensus 183 --~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~---~~~~l~~ll~~cp~Le~L~L~~--------------- 240 (565)
|++|++|.|.. .+.. ...|.+|++|++|+|..+.+ .+.. +.+|..+..+.+..
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~a----F~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEA----LADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTS----SCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhh----hcCCCceEEecCcchhhhhcccccccccc
Confidence 79999999998 6655 56688999999999988753 2221 23344444443222
Q ss_pred --cCCCc--------------------------cccc-------------ccCcccceeEccccc-ccccchhh-cCccc
Q 008452 241 --CLGLK--------------------------LLCI-------------SGAHKLKILTMETLS-SELKGVKI-VASSL 277 (565)
Q Consensus 241 --c~~l~--------------------------~l~i-------------~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L 277 (565)
|..++ .+.+ ..|++|+.|++..+. ..+..-.+ +|++|
T Consensus 173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred ccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 11111 0000 027899999999873 23333345 78999
Q ss_pred cEeeecCCCCCCCCceeecccccccc-cccccccchHHHHHHhcCCCCcceeeccc
Q 008452 278 QQLTLQFPFEGQGTPVVDIAVCPNLK-KFRAFNLLGQEFCTLISKFPLLEDLSLFA 332 (565)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~~~~i~~~~l~~l~~~~~~L~~L~L~~ 332 (565)
+++.+.++- ..-....|.+|++|+ .+.+.+--...-...+.+|++|+.|++..
T Consensus 253 ~~l~l~~ni--~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 253 LKIKLPHNL--KTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp CEEECCTTC--CEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECS
T ss_pred CEEECCccc--ceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeCC
Confidence 999998873 333344678899998 88876411111234577899999999864
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.16 E-value=2.9e-06 Score=77.14 Aligned_cols=112 Identities=21% Similarity=0.103 Sum_probs=70.5
Q ss_pred ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--c
Q 008452 173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--C 248 (565)
Q Consensus 173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~ 248 (565)
...+|..+. ++|++|.++++.+.. +..+..+++|++|+|+++.++.- ....+..+++|+.|++++|...... .
T Consensus 19 l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 95 (177)
T 2o6r_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGV 95 (177)
T ss_dssp CSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccCHHH
Confidence 344554433 588889998888776 33457788888888888877311 1123467888888888887543211 1
Q ss_pred cccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452 249 ISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 249 i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
+..+++|+.|+++++. ..+..-.+ .+++|++|++++|.+
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 3346778888887774 22221112 467777777777764
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=1.2e-06 Score=88.24 Aligned_cols=170 Identities=15% Similarity=0.084 Sum_probs=100.5
Q ss_pred CCcEEEEEEeCCCCcCcccccccCccccc-CCCccEEEecCccCCC----------------------CCcccC------
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFS-ANFLTHLRLAGCKLEQ----------------------PCYAMC------ 204 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~-~~~L~~L~L~~c~l~~----------------------~~~~~~------ 204 (565)
.++++|.+...-. ...+ ..+.. +++|+.|+|+++.+.. ...+.+
T Consensus 25 ~~l~~L~l~g~i~------~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGKLN------AEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEEEC------HHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEE
T ss_pred CceeEEEEecccc------HHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccc
Confidence 4788999886311 1111 11222 6789999999987771 123445
Q ss_pred --CCcCcEEEcCCeee---chHHHHHHHhcCcCCceeEeeecCC--CcccccccCcccceeEccc---------------
Q 008452 205 --FLSLKKLHLYGVYI---TEQMVQKLLHECHFLEDLNFFECLG--LKLLCISGAHKLKILTMET--------------- 262 (565)
Q Consensus 205 --l~~Lk~L~L~~~~~---~~~~l~~ll~~cp~Le~L~L~~c~~--l~~l~i~~~~~L~~L~l~~--------------- 262 (565)
|++|++|+|.. .+ .+. .+.+|++|++|++..+.. +..-.+.+|.++..+....
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~----aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDA----AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTT----TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred cccCCCcEEECCc-cccchhHH----HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 88899988877 43 332 356789999999887753 1111222233343333222
Q ss_pred --cccccc----------------------------------------chhhcCccccEeeecCCCCCCCCceeeccccc
Q 008452 263 --LSSELK----------------------------------------GVKIVASSLQQLTLQFPFEGQGTPVVDIAVCP 300 (565)
Q Consensus 263 --c~~~l~----------------------------------------~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~ 300 (565)
|. .+. .+.-.|++|++++++++.+ ..-....|.+|+
T Consensus 173 ~~~~-~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i-~~I~~~aF~~~~ 250 (329)
T 3sb4_A 173 IEGE-PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNA-TTIPDFTFAQKK 250 (329)
T ss_dssp EESC-CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCC-CEECTTTTTTCT
T ss_pred cccc-ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCc-ceecHhhhhCCC
Confidence 10 000 0011389999999998765 333344688999
Q ss_pred ccccccccccchHHHHHHhcCCCCcc-eeecccccccccc
Q 008452 301 NLKKFRAFNLLGQEFCTLISKFPLLE-DLSLFACSSFERI 339 (565)
Q Consensus 301 ~L~~L~~~~i~~~~l~~l~~~~~~L~-~L~L~~C~~~~~l 339 (565)
+|+.|.+.+.-...-...+.+|++|+ .|+|.. .+..|
T Consensus 251 ~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 251 YLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp TCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEE
T ss_pred CCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEE
Confidence 99988876421112233577899999 999976 44444
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.14 E-value=1e-07 Score=88.63 Aligned_cols=102 Identities=16% Similarity=0.011 Sum_probs=67.1
Q ss_pred cccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc--cccCcccceeEcccccccccch-hh-cCcc
Q 008452 201 YAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC--ISGAHKLKILTMETLSSELKGV-KI-VASS 276 (565)
Q Consensus 201 ~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~--i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~ 276 (565)
.+..+++|++|+|+++.+.+ +. .+..+++|+.|++++|... .+. +..+++|+.|++++|. +..+ .+ .+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~--l~~l~~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQ--IASLSGIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEE--CCCHHHHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCc--CCcCCccccCCC
Confidence 67789999999999998843 33 4667899999999998542 221 1225788888888884 3222 23 6778
Q ss_pred ccEeeecCCCCCCCCceeeccccccccccccc
Q 008452 277 LQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF 308 (565)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~ 308 (565)
|+.|++++|.+...+....+..+++|+.|++.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence 88888888775211111245556666655554
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.08 E-value=4.8e-06 Score=77.02 Aligned_cols=111 Identities=17% Similarity=0.108 Sum_probs=61.9
Q ss_pred cccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccc
Q 008452 174 YTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCIS 250 (565)
Q Consensus 174 ~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~ 250 (565)
..+|..+. ++|++|.|+++.+.. +..+..+++|++|+|+++.++.- ....+.++++|++|+|++|..... -.+.
T Consensus 23 ~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~ 99 (193)
T 2wfh_A 23 KVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99 (193)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred CcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCccCEeCHHHhC
Confidence 34454432 467777777777666 55666777777777777766211 112245667777777777654221 1233
Q ss_pred cCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452 251 GAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 251 ~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
.+++|+.|+++++. ..+..-.+ .+++|+.|++++|.+
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 45666667766663 11111112 456666666666653
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.07 E-value=6.1e-07 Score=92.13 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=99.2
Q ss_pred HHHHhCCcEEEEEEeCCCCcCcccccccCccccc-CCCccEEEecCccCCC---CCcccCCCcCcEEEcCCeeechHHHH
Q 008452 149 ALAIENGVKELDFQILPDIKDYVHTYTLPQTVFS-ANFLTHLRLAGCKLEQ---PCYAMCFLSLKKLHLYGVYITEQMVQ 224 (565)
Q Consensus 149 ~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~-~~~L~~L~L~~c~l~~---~~~~~~l~~Lk~L~L~~~~~~~~~l~ 224 (565)
...+.+++++|+|....-. ......+...+.. +++|++|+|++|.+.. ......+++|++|+|++|.+++....
T Consensus 67 ~~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 67 SAEVLSSLRQLNLAGVRMT--PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HHHHHTTCCEEECTTSCCC--HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred HHHHHhhCCEEEecCCCCC--HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence 3344568888887653110 0111223333332 3689999999998865 23334567899999999998766555
Q ss_pred HHH----hcCcCCceeEeeecCCCc----cc--ccccCcccceeEccccc---ccccchh--h-cCccccEeeecCCCCC
Q 008452 225 KLL----HECHFLEDLNFFECLGLK----LL--CISGAHKLKILTMETLS---SELKGVK--I-VASSLQQLTLQFPFEG 288 (565)
Q Consensus 225 ~ll----~~cp~Le~L~L~~c~~l~----~l--~i~~~~~L~~L~l~~c~---~~l~~i~--~-~~p~L~~L~l~~~~~~ 288 (565)
.+. ..++.|++|+|++|..-. .+ .+..+++|++|++++|. .+...+. + ..++|++|++++|.+
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i- 223 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA- 223 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC-
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC-
Confidence 443 357889999999986411 11 11235788888888875 1122221 2 456788888877764
Q ss_pred CCCceeecccccccccccccccch---HHHHHHhcCCCCcceeeccccc
Q 008452 289 QGTPVVDIAVCPNLKKFRAFNLLG---QEFCTLISKFPLLEDLSLFACS 334 (565)
Q Consensus 289 ~~~~~~~l~~~~~L~~L~~~~i~~---~~l~~l~~~~~~L~~L~L~~C~ 334 (565)
++ ..+...+...++|+.|+|++|.
T Consensus 224 ----------------------~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 224 ----------------------GDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp ----------------------CHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred ----------------------CHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 33 2344455677888899888863
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.07 E-value=5.1e-06 Score=90.10 Aligned_cols=100 Identities=18% Similarity=0.063 Sum_probs=42.8
Q ss_pred ccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEccccc-
Q 008452 186 LTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS- 264 (565)
Q Consensus 186 L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~- 264 (565)
|+.|+|++|.+...+.+..+++|+.|+|++|.++ .+...+..+++|+.|+|++|...+--.+..+++|+.|++++|.
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred ceEEEecCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCC
Confidence 4445555544444222444445555555544442 1222334445555555554433211123334555555555543
Q ss_pred cccc-chhh-cCccccEeeecCCCC
Q 008452 265 SELK-GVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 265 ~~l~-~i~~-~~p~L~~L~l~~~~~ 287 (565)
.++. .-.+ .+++|+.|++++|.+
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcC
Confidence 1111 1122 455555555555554
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.06 E-value=3.3e-06 Score=78.04 Aligned_cols=99 Identities=17% Similarity=0.098 Sum_probs=68.5
Q ss_pred cEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcccceeEcccc
Q 008452 187 THLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHKLKILTMETL 263 (565)
Q Consensus 187 ~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c 263 (565)
++++++++.+.. +... .++|++|+|+++.++.-.....+..+++|++|+|++|...+. -.+..+++|+.|+++++
T Consensus 11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 789999988876 3322 349999999999883221112467889999999999865332 13455788999999888
Q ss_pred c-ccccchhh-cCccccEeeecCCCC
Q 008452 264 S-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 264 ~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
. .++..-.+ .+++|++|++++|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcC
Confidence 5 22222223 578888888888875
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.99 E-value=1.1e-05 Score=74.45 Aligned_cols=97 Identities=21% Similarity=0.084 Sum_probs=69.3
Q ss_pred cEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcccceeEcccc
Q 008452 187 THLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHKLKILTMETL 263 (565)
Q Consensus 187 ~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c 263 (565)
+.++++++.+.. +.. -.++|++|+|+++.++ .+...+..+++|+.|+|++|..... -.+.++++|+.|+++++
T Consensus 13 ~~l~~~~~~l~~ip~~--~~~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG--IPRDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC--CCTTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC--CCCCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 678888888876 332 2479999999999884 2224567899999999999865322 12456788999999988
Q ss_pred c-ccccchhh-cCccccEeeecCCCC
Q 008452 264 S-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 264 ~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
. ..+..-.+ .+++|+.|++++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDI 114 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCC
Confidence 5 22222223 678888888888875
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.88 E-value=1.9e-05 Score=71.55 Aligned_cols=101 Identities=17% Similarity=0.069 Sum_probs=67.2
Q ss_pred CccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcccceeEccc
Q 008452 185 FLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKLKILTMET 262 (565)
Q Consensus 185 ~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~ 262 (565)
+.+.++++++.+...+ ....++|++|+|+++.+.. .....+..+++|++|++++|...... .+..+++|+.|++++
T Consensus 8 ~~~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVP-TGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCC-CCCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4578888888877622 2235799999999998832 11233567899999999988643211 134578888888888
Q ss_pred cc-ccccchhh-cCccccEeeecCCCC
Q 008452 263 LS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 263 c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
+. ..+..-.+ .+++|++|++++|.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcc
Confidence 74 22222122 567888888888775
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.79 E-value=4e-05 Score=79.32 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=61.7
Q ss_pred CccEEEecCccCCC--CCcccCCCcCcEEEcCCeee---chHHHHHHHhcCcCCceeEeeecCCCccc---ccccCcccc
Q 008452 185 FLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI---TEQMVQKLLHECHFLEDLNFFECLGLKLL---CISGAHKLK 256 (565)
Q Consensus 185 ~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~---~~~~l~~ll~~cp~Le~L~L~~c~~l~~l---~i~~~~~L~ 256 (565)
+|+++.|.+ .+.. ...+.+|++|++++|..+.+ .+..+ .|..|+.+.|... ++.+ .+.+|++|+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~ 229 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVT--LKEIGSQAFLKTSQLK 229 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTT--CCEECTTTTTTCTTCC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCc--hheehhhHhhCCCCCC
Confidence 466666554 2222 34455666666666665443 22222 1456666666422 2222 233456666
Q ss_pred eeEcccccccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccch------HHHHHHhcCCCCcceeec
Q 008452 257 ILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLG------QEFCTLISKFPLLEDLSL 330 (565)
Q Consensus 257 ~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~------~~l~~l~~~~~~L~~L~L 330 (565)
.+.+...-..+..-.+...+|+++.+..+. ..-....+..|++|+.+.+..... ..-...+.+|++|+.+.|
T Consensus 230 ~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i--~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 230 TIEIPENVSTIGQEAFRESGITTVKLPNGV--TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp CEECCTTCCEECTTTTTTCCCSEEEEETTC--CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred EEecCCCccCccccccccCCccEEEeCCCc--cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 666654211122222322456666653322 111122345566666555432100 011223456666666666
Q ss_pred c
Q 008452 331 F 331 (565)
Q Consensus 331 ~ 331 (565)
.
T Consensus 308 ~ 308 (401)
T 4fdw_A 308 P 308 (401)
T ss_dssp C
T ss_pred C
Confidence 5
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.77 E-value=1.4e-05 Score=89.40 Aligned_cols=106 Identities=14% Similarity=0.090 Sum_probs=61.5
Q ss_pred CcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCc
Q 008452 177 PQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAH 253 (565)
Q Consensus 177 p~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~ 253 (565)
|..+..+++|+.|+|++|.+.. +.....+++|++|+|++|.++ .+...+..+++|+.|+|++|... .+ .+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 4445556677777777776665 445556777777777777664 23333566777777777777542 22 233456
Q ss_pred ccceeEcccccccccch--hh-cCccccEeeecCCCC
Q 008452 254 KLKILTMETLSSELKGV--KI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 254 ~L~~L~l~~c~~~l~~i--~~-~~p~L~~L~l~~~~~ 287 (565)
+|+.|++++|. +..+ .+ .+++|+.|++++|.+
T Consensus 294 ~L~~L~L~~N~--l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 294 QLKYFYFFDNM--VTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp TCSEEECCSSC--CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCEEECCCCC--CCccChhhhcCCCccEEeCCCCcc
Confidence 67777777663 2222 13 566677777776665
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.76 E-value=1.3e-05 Score=89.71 Aligned_cols=142 Identities=12% Similarity=0.032 Sum_probs=75.0
Q ss_pred CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecC-----ccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHH
Q 008452 154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAG-----CKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLL 227 (565)
Q Consensus 154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~-----c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll 227 (565)
+.++.|+|... .....+..+.....|..+.+.+ +.+.. +..+..+++|+.|+|+++.+. .+..-+
T Consensus 173 ~~~~~l~L~~n-------~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~ 243 (727)
T 4b8c_D 173 PLTPKIELFAN-------GKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF--NISANI 243 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTSCCS--CCCGGG
T ss_pred CccceEEeeCC-------CCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC--CCChhh
Confidence 46778877552 2223444444444444444333 32222 456778899999999999883 122224
Q ss_pred hcCcCCceeEeeecCCCccc--ccccCcccceeEcccccccccch--hh-cCccccEeeecCCCCCCCCceeeccccccc
Q 008452 228 HECHFLEDLNFFECLGLKLL--CISGAHKLKILTMETLSSELKGV--KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNL 302 (565)
Q Consensus 228 ~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~~~l~~i--~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L 302 (565)
..+++|++|+|++|... .+ .+..+++|+.|++++|. +..+ .+ .+++|++|++++|.+. ..+..++.+++|
T Consensus 244 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~--l~~lp~~~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L 318 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR--LTSLPAELGSCFQLKYFYFFDNMVT--TLPWEFGNLCNL 318 (727)
T ss_dssp GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC--CSSCCSSGGGGTTCSEEECCSSCCC--CCCSSTTSCTTC
T ss_pred cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc--CCccChhhcCCCCCCEEECCCCCCC--ccChhhhcCCCc
Confidence 47999999999999653 33 34568999999999985 3333 23 7889999999999873 445568899999
Q ss_pred ccccccc
Q 008452 303 KKFRAFN 309 (565)
Q Consensus 303 ~~L~~~~ 309 (565)
+.|++.+
T Consensus 319 ~~L~L~~ 325 (727)
T 4b8c_D 319 QFLGVEG 325 (727)
T ss_dssp CCEECTT
T ss_pred cEEeCCC
Confidence 9888874
No 145
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.75 E-value=6.7e-06 Score=79.45 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=32.8
Q ss_pred cCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhh
Q 008452 32 RISDLPTFIIHHIMSFLPAKEAARASILSKRWEKF 66 (565)
Q Consensus 32 ~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~l 66 (565)
.|+.||++|+.+|||||+.+|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999964
No 146
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.75 E-value=1.2e-05 Score=78.52 Aligned_cols=36 Identities=22% Similarity=0.600 Sum_probs=34.0
Q ss_pred CcCCCCchHHHHHHHcCCChHHHH-HHhhcchhhhhh
Q 008452 31 DRISDLPTFIIHHIMSFLPAKEAA-RASILSKRWEKF 66 (565)
Q Consensus 31 D~is~LPd~vL~~ILs~L~~~d~v-r~s~lSkrWr~l 66 (565)
..+..||||||.+||++||.++++ |++.|||+|+.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 468999999999999999999999 999999999986
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.62 E-value=3.8e-05 Score=69.31 Aligned_cols=36 Identities=14% Similarity=0.013 Sum_probs=18.2
Q ss_pred CcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452 252 AHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 252 ~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
+++|+.|+++++. ..+..-.+ .+++|++|++++|.+
T Consensus 77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 4555555555542 11111112 456777777777764
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.60 E-value=5.6e-05 Score=68.46 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=18.3
Q ss_pred CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeee
Q 008452 184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI 218 (565)
Q Consensus 184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~ 218 (565)
++|+.|+|++|.+.. +..+..+++|++|+|++|.+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 69 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL 69 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC
Confidence 455555555555544 23344555555555555544
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.46 E-value=0.00015 Score=65.34 Aligned_cols=88 Identities=13% Similarity=0.076 Sum_probs=50.3
Q ss_pred cccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--cc
Q 008452 174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CI 249 (565)
Q Consensus 174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i 249 (565)
..+|..+. ++|++|+|++|.+.. +..+..+++|++|+|++|.++.- ....+..+++|+.|+|++|...+.. .+
T Consensus 22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 98 (170)
T 3g39_A 22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98 (170)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccCEeCHHHh
Confidence 34554442 567777777776665 34456677777777777766211 1122455677777777766442211 23
Q ss_pred ccCcccceeEccccc
Q 008452 250 SGAHKLKILTMETLS 264 (565)
Q Consensus 250 ~~~~~L~~L~l~~c~ 264 (565)
..+++|+.|+++++.
T Consensus 99 ~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 99 DNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCCCCCEEEeCCCC
Confidence 345677777777653
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.46 E-value=0.00026 Score=73.18 Aligned_cols=146 Identities=12% Similarity=0.130 Sum_probs=96.3
Q ss_pred cccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeee--chHHHHHHHhcCcCCceeEeeecCCCccc---ccccCc
Q 008452 180 VFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYI--TEQMVQKLLHECHFLEDLNFFECLGLKLL---CISGAH 253 (565)
Q Consensus 180 l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~--~~~~l~~ll~~cp~Le~L~L~~c~~l~~l---~i~~~~ 253 (565)
+..|++|+.+.|.++.+.. +...-.+.+|+++.|..... .+. .+.+|++|+.++|..+ ++.+ .+.+ .
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~ 248 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPEN--VSTIGQEAFRE-S 248 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCTT--CCEECTTTTTT-C
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhh----HhhCCCCCCEEecCCC--ccCcccccccc-C
Confidence 4468999999999887776 33333468999999975422 332 3568999999999763 3332 3334 6
Q ss_pred ccceeEcccccccccchhh-cCccccEeeecCCCCCCC----CceeecccccccccccccccchHHHHHHhcCCCCccee
Q 008452 254 KLKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQG----TPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDL 328 (565)
Q Consensus 254 ~L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~----~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L 328 (565)
+|+.+.+...-..+..-.+ +|++|+.+.+.++..... -....+..|++|+.+.+.+--...-...+.+|++|+.+
T Consensus 249 ~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 249 GITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp CCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEE
T ss_pred CccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEE
Confidence 8999998542222333345 899999999988764111 12335778999998887631111112346778888888
Q ss_pred eccc
Q 008452 329 SLFA 332 (565)
Q Consensus 329 ~L~~ 332 (565)
.|..
T Consensus 329 ~lp~ 332 (401)
T 4fdw_A 329 TIPA 332 (401)
T ss_dssp EECT
T ss_pred EECc
Confidence 8854
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.43 E-value=0.00016 Score=66.20 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=53.1
Q ss_pred cCCCccEEEecCc-cCCC------CCcccCCCcCcEEEcCCeeechHHH---HHHHhcCcCCceeEeeecCCCcc----c
Q 008452 182 SANFLTHLRLAGC-KLEQ------PCYAMCFLSLKKLHLYGVYITEQMV---QKLLHECHFLEDLNFFECLGLKL----L 247 (565)
Q Consensus 182 ~~~~L~~L~L~~c-~l~~------~~~~~~l~~Lk~L~L~~~~~~~~~l---~~ll~~cp~Le~L~L~~c~~l~~----l 247 (565)
.+++|++|+|++| .+.. .......++|++|+|++|.+++.+. ...+..++.|++|+|++|..-.. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3455666666665 5543 1122334566666666666644433 33344556666666666643111 1
Q ss_pred --ccccCcccceeEc--cccc---ccccchh---hcCccccEeeecCCCC
Q 008452 248 --CISGAHKLKILTM--ETLS---SELKGVK---IVASSLQQLTLQFPFE 287 (565)
Q Consensus 248 --~i~~~~~L~~L~l--~~c~---~~l~~i~---~~~p~L~~L~l~~~~~ 287 (565)
.+...++|++|++ ++|. .+...+. ...++|++|++++|.+
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 1222356666666 4443 1111121 1446677777766653
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.39 E-value=0.0002 Score=64.71 Aligned_cols=98 Identities=15% Similarity=0.051 Sum_probs=68.3
Q ss_pred ccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc---cccCcccceeEcc
Q 008452 186 LTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC---ISGAHKLKILTME 261 (565)
Q Consensus 186 L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~---i~~~~~L~~L~l~ 261 (565)
-+.++++++.+.. |... .++|++|+|+++.+..- ....+..+++|++|+|++|.. +.+. +..+++|+.|+++
T Consensus 14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECC
Confidence 4789999998877 4433 38999999999988321 123467789999999999854 3222 3457888889888
Q ss_pred ccc-ccccchhh-cCccccEeeecCCCC
Q 008452 262 TLS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 262 ~c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
++. ..+..-.+ .+++|+.|++++|.+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCc
Confidence 874 22222123 578888888888875
No 153
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.39 E-value=4.4e-05 Score=79.95 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=36.2
Q ss_pred CCCcCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhh
Q 008452 29 TMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFH 67 (565)
Q Consensus 29 ~~D~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw 67 (565)
..|.|+.||+||+.+||+||+.+|+++++.|||+|+++.
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~ 49 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII 49 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999998753
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.29 E-value=0.00048 Score=62.89 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=61.7
Q ss_pred ccCCCcCcEEEcCCe-eechHHHHH---HHhcCcCCceeEeeecCCCcc----c--ccccCcccceeEccccc---cccc
Q 008452 202 AMCFLSLKKLHLYGV-YITEQMVQK---LLHECHFLEDLNFFECLGLKL----L--CISGAHKLKILTMETLS---SELK 268 (565)
Q Consensus 202 ~~~l~~Lk~L~L~~~-~~~~~~l~~---ll~~cp~Le~L~L~~c~~l~~----l--~i~~~~~L~~L~l~~c~---~~l~ 268 (565)
....++|++|+|++| .+++.+... .+..++.|++|+|++|..-.. + .+...++|++|++++|. .+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345778888888888 776655443 345677788888877754111 1 01123566666666664 1111
Q ss_pred chh--h-cCccccEeee--cCCCCCCCCceeecccccccccccccccchHH---HHHHhcCCCCcceeecccc
Q 008452 269 GVK--I-VASSLQQLTL--QFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQE---FCTLISKFPLLEDLSLFAC 333 (565)
Q Consensus 269 ~i~--~-~~p~L~~L~l--~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~---l~~l~~~~~~L~~L~L~~C 333 (565)
.+. + ..++|++|++ ++|. ++++. +...+...++|++|+|++|
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~-----------------------i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQP-----------------------LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSC-----------------------CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCCCceEEEecCCCCC-----------------------CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 121 1 3345555555 4444 33333 4455666678888888775
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.18 E-value=0.00096 Score=68.63 Aligned_cols=53 Identities=8% Similarity=0.110 Sum_probs=32.8
Q ss_pred cCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCee-e-chHHHHHHHhcCcCCceeEee
Q 008452 182 SANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVY-I-TEQMVQKLLHECHFLEDLNFF 239 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~-~-~~~~l~~ll~~cp~Le~L~L~ 239 (565)
.|.+|+++.|... +.. ...|.+|.+|++++|.... . ++. .+.+|+.|+.+.+.
T Consensus 69 ~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVKMIGRC----TFSGCYALKSILLP 125 (394)
T ss_dssp TCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTT----TTTTCTTCCCCCCC
T ss_pred CCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCceEccch----hhcccccchhhccc
Confidence 5788888888643 322 3456778888888885432 1 322 24567777776554
No 156
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.13 E-value=0.00022 Score=74.29 Aligned_cols=38 Identities=29% Similarity=0.417 Sum_probs=35.7
Q ss_pred CCCcCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhh
Q 008452 29 TMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKF 66 (565)
Q Consensus 29 ~~D~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~l 66 (565)
..|.++.||+|++.+||+||+.+|+++++.|||+|+++
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 56889999999999999999999999999999999863
No 157
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.07 E-value=0.00014 Score=75.62 Aligned_cols=38 Identities=34% Similarity=0.579 Sum_probs=35.4
Q ss_pred CCCcCCCCchH----HHHHHHcCCChHHHHHHhhcchhhhhh
Q 008452 29 TMDRISDLPTF----IIHHIMSFLPAKEAARASILSKRWEKF 66 (565)
Q Consensus 29 ~~D~is~LPd~----vL~~ILs~L~~~d~vr~s~lSkrWr~l 66 (565)
..|.|+.||+| |+.+||+||+.+|+++++.|||+|+++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46889999999 999999999999999999999999853
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.78 E-value=0.001 Score=66.96 Aligned_cols=69 Identities=17% Similarity=0.028 Sum_probs=46.4
Q ss_pred ccccCcccccCCCccEEEecC-ccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCC
Q 008452 173 TYTLPQTVFSANFLTHLRLAG-CKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLG 243 (565)
Q Consensus 173 ~~~lp~~l~~~~~L~~L~L~~-c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~ 243 (565)
...+|. +..+++|++|+|++ |.+.. +..+.++++|+.|+|++|.+..- ....+.++++|+.|+|++|..
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCC
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCcc
Confidence 445777 77777888888886 77766 34577788888888888877221 122345677777777777643
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.48 E-value=0.0023 Score=64.29 Aligned_cols=98 Identities=16% Similarity=0.054 Sum_probs=67.7
Q ss_pred cEEEecCc-cCCC-CCcccCCCcCcEEEcCC-eeechHHHHHHHhcCcCCceeEeeecCCCccc---ccccCcccceeEc
Q 008452 187 THLRLAGC-KLEQ-PCYAMCFLSLKKLHLYG-VYITEQMVQKLLHECHFLEDLNFFECLGLKLL---CISGAHKLKILTM 260 (565)
Q Consensus 187 ~~L~L~~c-~l~~-~~~~~~l~~Lk~L~L~~-~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l---~i~~~~~L~~L~l 260 (565)
..+++++. .+.. |. +..+++|++|+|++ +.+..- ....+.++++|+.|+|++|.. +.+ .+..+++|+.|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCC-CEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCcc-ceeCHHHhcCCcCCCEEeC
Confidence 34677777 7777 55 88899999999996 877211 113367899999999999964 332 3455789999999
Q ss_pred cccc-ccccchhhcCccccEeeecCCCC
Q 008452 261 ETLS-SELKGVKIVASSLQQLTLQFPFE 287 (565)
Q Consensus 261 ~~c~-~~l~~i~~~~p~L~~L~l~~~~~ 287 (565)
+++. ..+..-.+...+|+.|++.+|.+
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CCCccceeCHHHcccCCceEEEeeCCCc
Confidence 9884 22222123333488999888875
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.92 E-value=0.003 Score=61.08 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=17.5
Q ss_pred CCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecC
Q 008452 204 CFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECL 242 (565)
Q Consensus 204 ~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~ 242 (565)
++++|++|+|++|.+ +-..+..++..+|+|+.|+|++|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 344455555555544 212233334445555555555443
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.92 E-value=0.014 Score=59.71 Aligned_cols=145 Identities=11% Similarity=0.075 Sum_probs=67.3
Q ss_pred ccCCCccEEEecCccCC-CCCcccCCCcCcEEEcCCeee--chHHHHHHHhcCcCCceeEeeecCCCcccccccCcccce
Q 008452 181 FSANFLTHLRLAGCKLE-QPCYAMCFLSLKKLHLYGVYI--TEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKI 257 (565)
Q Consensus 181 ~~~~~L~~L~L~~c~l~-~~~~~~~l~~Lk~L~L~~~~~--~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~ 257 (565)
+.+.+|+.+.+....-. ....+.++..|+.+.+..... ... ....|+.|+.+...... +.......|.+|+.
T Consensus 227 ~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~~~~~-i~~~~F~~~~~L~~ 301 (394)
T 4fs7_A 227 LSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIYGSVI-VPEKTFYGCSSLTE 301 (394)
T ss_dssp TTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEECSSE-ECTTTTTTCTTCCE
T ss_pred cccCCCceEEECCCceecccccccccccceeEEcCCCcceeecc----ccccccccceeccCcee-eccccccccccccc
Confidence 34556666666543111 123455566666666654322 111 13446666655544321 11222333566666
Q ss_pred eEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccc
Q 008452 258 LTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFA 332 (565)
Q Consensus 258 L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~ 332 (565)
+.+...-..+..-++ +|.+|+++.+..+. ..-....+.+|.+|+.+.+..--...-...+.+|++|++++|..
T Consensus 302 i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v--~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 302 VKLLDSVKFIGEEAFESCTSLVSIDLPYLV--EEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EEECTTCCEECTTTTTTCTTCCEECCCTTC--CEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG
T ss_pred cccccccceechhhhcCCCCCCEEEeCCcc--cEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECC
Confidence 665432111222233 56666666664332 11112245566677766553211011122466778888887754
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.72 E-value=0.0071 Score=58.42 Aligned_cols=107 Identities=14% Similarity=0.022 Sum_probs=59.7
Q ss_pred CCCcCcE--EEcCCeee--chHHHHHHHhcCcCCceeEeeecCCCc--ccc--cccCcccceeEccccc-ccccchhh-c
Q 008452 204 CFLSLKK--LHLYGVYI--TEQMVQKLLHECHFLEDLNFFECLGLK--LLC--ISGAHKLKILTMETLS-SELKGVKI-V 273 (565)
Q Consensus 204 ~l~~Lk~--L~L~~~~~--~~~~l~~ll~~cp~Le~L~L~~c~~l~--~l~--i~~~~~L~~L~l~~c~-~~l~~i~~-~ 273 (565)
..+.|+. +.+..+.. -...+..+..++|.|+.|+|++|.... .+. +..+++|+.|+++++. .++..+.. .
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~ 218 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK 218 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc
Confidence 3444554 44454433 112233333568888888888886533 221 1247888888888875 22222221 1
Q ss_pred CccccEeeecCCCCCCCC------ceeeccccccccccccccc
Q 008452 274 ASSLQQLTLQFPFEGQGT------PVVDIAVCPNLKKFRAFNL 310 (565)
Q Consensus 274 ~p~L~~L~l~~~~~~~~~------~~~~l~~~~~L~~L~~~~i 310 (565)
..+|++|.+++|++.... ....+..+++|+.|+...+
T Consensus 219 ~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 219 GLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp TSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred cCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCC
Confidence 117888888888862211 1123567788888776544
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.08 E-value=0.019 Score=58.72 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=52.5
Q ss_pred cCcccceeEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceee
Q 008452 251 GAHKLKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLS 329 (565)
Q Consensus 251 ~~~~L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~ 329 (565)
+|..|+.+.+......+..-.+ +|++|+.+.+.... ..-....+.+|.+|+.+.+..--...-...+.+|.+|+++.
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i--~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRI--TELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred ecccccEEecccccceecCcccccccccccccCCCcc--cccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEE
Confidence 3677777777543212222233 67888888875433 11122346778888877764211111123466788888888
Q ss_pred ccccccccccc----ccCCcccEEeec
Q 008452 330 LFACSSFERIT----ISSNQLKHLSLV 352 (565)
Q Consensus 330 L~~C~~~~~l~----~~~~~L~~L~L~ 352 (565)
|-. .+..|. ..|.+|+.+.+.
T Consensus 341 ip~--sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 341 IPS--SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp ECT--TCCBCCGGGGTTCTTCCEEEES
T ss_pred ECc--ccCEEhHhHhhCCCCCCEEEEC
Confidence 853 233332 134555555544
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.23 E-value=0.053 Score=55.39 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=68.3
Q ss_pred CcccCCCcCcEEEcCCeee--chHHHHHHHhcCcCCceeEeeecC-CCcccccccCcccceeEcccccccccchhh-cCc
Q 008452 200 CYAMCFLSLKKLHLYGVYI--TEQMVQKLLHECHFLEDLNFFECL-GLKLLCISGAHKLKILTMETLSSELKGVKI-VAS 275 (565)
Q Consensus 200 ~~~~~l~~Lk~L~L~~~~~--~~~~l~~ll~~cp~Le~L~L~~c~-~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~-~~p 275 (565)
..+.+|.+|+++.+..... +.. .+.+|+.|+.+.+...- .+..-.+.+|.+|+.+.+...-..+..-++ +|.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCT
T ss_pred ceeeecccccEEecccccceecCc----ccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCC
Confidence 4566777888887754432 222 24568888888775321 122223445788888888642112222234 678
Q ss_pred cccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccc
Q 008452 276 SLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFA 332 (565)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~ 332 (565)
+|+++.+..+. ..-....+.+|.+|+.+.+..... ....+..+.+|+.+.+..
T Consensus 335 ~L~~i~ip~sv--~~I~~~aF~~C~~L~~i~~~~~~~--~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 335 QLERIAIPSSV--TKIPESAFSNCTALNNIEYSGSRS--QWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCCEEEECTTC--CBCCGGGGTTCTTCCEEEESSCHH--HHHTCBCCCCC-------
T ss_pred CCCEEEECccc--CEEhHhHhhCCCCCCEEEECCcee--ehhhhhccCCCCEEEeCC
Confidence 88888886543 222344677888888777653221 123456777888877753
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.27 E-value=0.036 Score=50.74 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHHh--CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC---CCcc---cCCCcCcEE
Q 008452 140 LPPLLDKWIALAIE--NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ---PCYA---MCFLSLKKL 211 (565)
Q Consensus 140 ~~~~i~~wi~~~~~--~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~---~~~~---~~l~~Lk~L 211 (565)
....++.++..+.. +.+++|+|...... +......+-..+..-.+|+.|+|++|.+.+ .... ..-..|++|
T Consensus 25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~i-gd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L 103 (197)
T 1pgv_A 25 NDTDVESCINRLREDDTDLKEVNINNMKRV-SKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVL 103 (197)
T ss_dssp --CCHHHHHHHHHTTCSSCCEEECTTCCSS-CHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEE
T ss_pred CCCCHHHHHHHHHhcCCCccEEECCCCCCC-CHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeE
Confidence 34567777776654 36778777531011 001112333344455678888888887765 1111 234678888
Q ss_pred EcCCeeechHHHHHHH---hcCcCCceeEeeec
Q 008452 212 HLYGVYITEQMVQKLL---HECHFLEDLNFFEC 241 (565)
Q Consensus 212 ~L~~~~~~~~~l~~ll---~~cp~Le~L~L~~c 241 (565)
+|++|.+++.+...+. ..-..|++|+|.++
T Consensus 104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 8888888666655543 34455777776654
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.69 E-value=0.074 Score=53.84 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=8.7
Q ss_pred HhcCCCCcceeecc
Q 008452 318 LISKFPLLEDLSLF 331 (565)
Q Consensus 318 l~~~~~~L~~L~L~ 331 (565)
.+.+|.+|+++.|.
T Consensus 305 aF~~c~~L~~i~lp 318 (379)
T 4h09_A 305 VFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTTCTTCCEEECC
T ss_pred hhcCCCCCCEEEcC
Confidence 34566677776664
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.58 E-value=0.18 Score=46.05 Aligned_cols=106 Identities=13% Similarity=0.073 Sum_probs=64.3
Q ss_pred ccCCCccEEEecCc-cCCC------CCcccCCCcCcEEEcCCeeechHH---HHHHHhcCcCCceeEeeecCCCcc----
Q 008452 181 FSANFLTHLRLAGC-KLEQ------PCYAMCFLSLKKLHLYGVYITEQM---VQKLLHECHFLEDLNFFECLGLKL---- 246 (565)
Q Consensus 181 ~~~~~L~~L~L~~c-~l~~------~~~~~~l~~Lk~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~c~~l~~---- 246 (565)
.+-++|++|+|+++ .+.+ -.....-..|++|+|++|.+++.+ +...+.....|++|+|+.|..-..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34578999999885 6654 111234578999999999996554 555566788899999988865111
Q ss_pred c--ccccCcccceeEcccccc------cccchh--h-cCccccEeeecCCC
Q 008452 247 L--CISGAHKLKILTMETLSS------ELKGVK--I-VASSLQQLTLQFPF 286 (565)
Q Consensus 247 l--~i~~~~~L~~L~l~~c~~------~l~~i~--~-~~p~L~~L~l~~~~ 286 (565)
+ .+..-.+|+.|+++++.. +-..+. + .-++|+.|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 1 011125688888875421 111121 1 34567777775544
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.52 E-value=0.15 Score=51.63 Aligned_cols=144 Identities=11% Similarity=0.020 Sum_probs=78.9
Q ss_pred cCCCccEEEecCccC-CCCCcccCCCcCcEEEcCCeee--chHHHHHHHhcCcCCceeEeeecC-CCcccccccCcccce
Q 008452 182 SANFLTHLRLAGCKL-EQPCYAMCFLSLKKLHLYGVYI--TEQMVQKLLHECHFLEDLNFFECL-GLKLLCISGAHKLKI 257 (565)
Q Consensus 182 ~~~~L~~L~L~~c~l-~~~~~~~~l~~Lk~L~L~~~~~--~~~~l~~ll~~cp~Le~L~L~~c~-~l~~l~i~~~~~L~~ 257 (565)
.+.++..+.+..... .....+..+.+|+.+.+..... .+. ...+|..|+.+.+...- .+..-....|.+|+.
T Consensus 192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~----~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDG----AFYGMKALDEIAIPKNVTSIGSFLLQNCTALKT 267 (379)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTT----TTTTCSSCCEEEECTTCCEECTTTTTTCTTCCE
T ss_pred ccccccccccccceeEEeecccccccccceeeeccceeEEccc----cccCCccceEEEcCCCccEeCccccceeehhcc
Confidence 455666666555311 1134556677788877754422 222 24568888888875431 122223444777888
Q ss_pred eEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccc-cchHHHHHHhcCCCCcceeecc
Q 008452 258 LTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFN-LLGQEFCTLISKFPLLEDLSLF 331 (565)
Q Consensus 258 L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~-i~~~~l~~l~~~~~~L~~L~L~ 331 (565)
+.+......+..-.+ +|++|+.+.+.++.+ ..-....+.+|.+|+.+.+.. ++. .-...+.+|.+|+++.|-
T Consensus 268 i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i-~~I~~~aF~~c~~L~~i~lp~~l~~-I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 268 LNFYAKVKTVPYLLCSGCSNLTKVVMDNSAI-ETLEPRVFMDCVKLSSVTLPTALKT-IQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCCCSEECTTTTTTCTTCCEEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCCCCCC
T ss_pred ccccccceecccccccccccccccccccccc-ceehhhhhcCCCCCCEEEcCccccE-EHHHHhhCCCCCCEEEEC
Confidence 877543212222233 678888888866543 111223567788888777642 111 111235677777777774
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=74.28 E-value=2.3 Score=35.62 Aligned_cols=35 Identities=26% Similarity=0.178 Sum_probs=28.2
Q ss_pred CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeee
Q 008452 184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI 218 (565)
Q Consensus 184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~ 218 (565)
++|+.|+|++|.+.. ...+..+++|++|+|.+|.+
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 468899999998877 44567788899999988877
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=29.52 E-value=39 Score=27.82 Aligned_cols=34 Identities=12% Similarity=-0.028 Sum_probs=16.1
Q ss_pred ccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452 254 KLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE 287 (565)
Q Consensus 254 ~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~ 287 (565)
+|+.|+++++. ..+..-.+ ..++|+.|++.+|++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 45555555553 11111112 345666666666653
Done!