Query 008454
Match_columns 565
No_of_seqs 693 out of 3229
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 12:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.4E-61 5.1E-66 516.9 58.3 419 118-559 420-863 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.5E-61 7.6E-66 515.6 57.6 416 117-554 383-800 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 6.3E-59 1.4E-63 495.9 47.1 414 116-562 99-513 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.4E-55 3E-60 481.3 49.4 428 116-561 133-643 (857)
5 PLN03081 pentatricopeptide (PP 100.0 5.6E-55 1.2E-59 465.5 51.0 424 103-562 120-547 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 2.8E-54 6.1E-59 471.0 48.9 443 104-562 84-608 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-25 5.4E-30 248.1 55.7 431 115-562 442-890 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-24 3E-29 242.1 54.3 412 109-535 470-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 3.3E-21 7.1E-26 193.1 37.0 301 237-544 44-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.1E-20 2.4E-25 189.3 36.9 303 200-509 42-354 (389)
11 PRK11447 cellulose synthase su 99.9 1.9E-18 4E-23 194.3 54.2 413 111-541 276-745 (1157)
12 PRK11447 cellulose synthase su 99.9 2.5E-18 5.4E-23 193.2 55.1 436 116-560 159-728 (1157)
13 TIGR00990 3a0801s09 mitochondr 99.9 4.5E-18 9.8E-23 179.5 50.3 370 142-537 129-571 (615)
14 PRK15174 Vi polysaccharide exp 99.9 3.8E-18 8.3E-23 179.5 48.3 333 143-503 45-382 (656)
15 PRK15174 Vi polysaccharide exp 99.9 4E-18 8.7E-23 179.3 46.1 336 192-537 41-381 (656)
16 KOG4626 O-linked N-acetylgluco 99.9 6.8E-19 1.5E-23 168.7 35.4 389 118-543 96-489 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-17 3.9E-22 175.0 48.6 365 111-502 134-571 (615)
18 PRK14574 hmsH outer membrane p 99.9 2.5E-16 5.5E-21 166.1 50.7 409 102-537 32-513 (822)
19 KOG4626 O-linked N-acetylgluco 99.9 2.8E-18 6E-23 164.6 32.3 411 116-561 60-474 (966)
20 PRK10049 pgaA outer membrane p 99.9 5.6E-17 1.2E-21 174.4 46.6 413 102-546 11-463 (765)
21 PRK10049 pgaA outer membrane p 99.8 2.1E-16 4.5E-21 170.0 43.5 396 137-562 12-446 (765)
22 PRK09782 bacteriophage N4 rece 99.8 1.6E-14 3.5E-19 155.7 51.9 177 378-561 519-695 (987)
23 PRK14574 hmsH outer membrane p 99.8 6.6E-14 1.4E-18 148.1 47.9 394 141-562 35-503 (822)
24 KOG2002 TPR-containing nuclear 99.8 1.2E-14 2.6E-19 147.2 39.1 448 106-560 166-733 (1018)
25 KOG4422 Uncharacterized conser 99.8 1.1E-13 2.4E-18 127.8 41.3 413 118-540 129-593 (625)
26 PRK09782 bacteriophage N4 rece 99.8 4.8E-13 1.1E-17 144.5 53.3 217 313-538 491-707 (987)
27 KOG4422 Uncharacterized conser 99.7 2.4E-13 5.3E-18 125.6 37.8 367 138-528 205-616 (625)
28 KOG2003 TPR repeat-containing 99.7 1E-14 2.2E-19 135.4 28.6 419 120-561 217-712 (840)
29 KOG2002 TPR-containing nuclear 99.7 7.2E-13 1.6E-17 134.5 42.6 435 105-549 269-757 (1018)
30 KOG2076 RNA polymerase III tra 99.7 1.6E-12 3.5E-17 131.2 41.6 373 141-536 140-554 (895)
31 PRK10747 putative protoheme IX 99.6 3.2E-12 7E-17 127.0 35.3 282 241-535 97-388 (398)
32 TIGR00540 hemY_coli hemY prote 99.6 3.5E-12 7.6E-17 127.5 35.5 262 198-464 123-396 (409)
33 TIGR00540 hemY_coli hemY prote 99.6 4E-12 8.7E-17 127.1 35.6 291 240-535 96-397 (409)
34 PRK10747 putative protoheme IX 99.6 5.4E-12 1.2E-16 125.5 36.1 285 206-502 97-390 (398)
35 KOG2076 RNA polymerase III tra 99.6 1.8E-11 3.9E-16 123.7 38.9 365 111-499 146-552 (895)
36 KOG1155 Anaphase-promoting com 99.6 3.8E-11 8.3E-16 112.6 37.4 309 236-554 235-551 (559)
37 COG2956 Predicted N-acetylgluc 99.6 1.1E-11 2.3E-16 111.1 31.0 291 241-538 48-348 (389)
38 PF13429 TPR_15: Tetratricopep 99.6 8.7E-15 1.9E-19 139.0 12.4 221 306-533 52-273 (280)
39 PF13429 TPR_15: Tetratricopep 99.6 1.3E-14 2.8E-19 137.8 13.4 262 233-501 13-276 (280)
40 KOG1915 Cell cycle control pro 99.6 1.5E-09 3.3E-14 102.2 45.9 392 116-538 85-537 (677)
41 KOG2003 TPR repeat-containing 99.6 5.2E-12 1.1E-16 117.7 28.8 392 145-561 206-678 (840)
42 KOG1126 DNA-binding cell divis 99.6 2.3E-12 5E-17 126.2 27.4 290 243-543 334-626 (638)
43 KOG1155 Anaphase-promoting com 99.6 1.5E-10 3.3E-15 108.7 37.9 313 199-537 233-553 (559)
44 COG2956 Predicted N-acetylgluc 99.6 3.4E-11 7.4E-16 107.9 31.1 287 206-502 48-347 (389)
45 KOG0495 HAT repeat protein [RN 99.5 1.8E-09 3.8E-14 105.7 43.6 332 193-535 516-878 (913)
46 COG3071 HemY Uncharacterized e 99.5 2.2E-10 4.8E-15 105.9 34.6 288 241-538 97-391 (400)
47 COG3071 HemY Uncharacterized e 99.5 3E-10 6.5E-15 105.1 33.9 287 206-502 97-390 (400)
48 KOG1126 DNA-binding cell divis 99.5 1.1E-11 2.3E-16 121.6 25.8 290 208-508 334-626 (638)
49 KOG0547 Translocase of outer m 99.5 3.3E-10 7.2E-15 107.1 34.6 366 144-535 119-564 (606)
50 KOG0495 HAT repeat protein [RN 99.5 4.6E-09 1E-13 102.8 40.1 356 135-502 474-880 (913)
51 KOG0547 Translocase of outer m 99.4 3.7E-09 7.9E-14 100.2 35.7 223 274-502 337-566 (606)
52 KOG4318 Bicoid mRNA stability 99.4 1.7E-11 3.6E-16 123.3 20.6 90 250-351 12-101 (1088)
53 PRK12370 invasion protein regu 99.4 8.2E-10 1.8E-14 114.8 32.3 216 156-396 277-501 (553)
54 KOG1173 Anaphase-promoting com 99.4 6.2E-09 1.3E-13 100.5 34.2 284 265-556 246-535 (611)
55 KOG1156 N-terminal acetyltrans 99.4 4.6E-08 9.9E-13 96.1 40.5 389 115-539 18-470 (700)
56 PRK12370 invasion protein regu 99.4 4.9E-10 1.1E-14 116.5 29.2 251 119-398 276-536 (553)
57 TIGR02521 type_IV_pilW type IV 99.4 8.5E-10 1.8E-14 101.8 27.7 200 333-536 31-231 (234)
58 KOG1915 Cell cycle control pro 99.4 2.3E-07 5E-12 87.9 42.7 385 118-535 155-583 (677)
59 KOG1129 TPR repeat-containing 99.4 6.4E-10 1.4E-14 99.9 24.0 230 197-432 227-458 (478)
60 TIGR02521 type_IV_pilW type IV 99.3 1.3E-09 2.7E-14 100.6 26.7 197 195-395 33-230 (234)
61 KOG2047 mRNA splicing factor [ 99.3 5.3E-07 1.1E-11 88.6 42.7 270 192-468 168-507 (835)
62 KOG1129 TPR repeat-containing 99.3 4.5E-10 9.7E-15 100.8 19.8 234 262-502 222-458 (478)
63 PF12569 NARP1: NMDA receptor- 99.3 2.8E-08 6E-13 100.1 34.4 293 200-501 11-333 (517)
64 KOG2047 mRNA splicing factor [ 99.3 1.5E-06 3.3E-11 85.5 44.3 372 118-501 152-614 (835)
65 PF12569 NARP1: NMDA receptor- 99.3 2.8E-08 6E-13 100.1 33.0 299 141-466 5-333 (517)
66 KOG4318 Bicoid mRNA stability 99.3 5.1E-10 1.1E-14 113.0 20.2 249 216-488 13-286 (1088)
67 PF13041 PPR_2: PPR repeat fam 99.2 2.6E-11 5.6E-16 80.9 6.7 49 261-309 1-49 (50)
68 KOG1156 N-terminal acetyltrans 99.2 6.9E-07 1.5E-11 88.1 39.0 402 98-535 35-509 (700)
69 PF13041 PPR_2: PPR repeat fam 99.2 3.2E-11 6.9E-16 80.5 6.5 50 506-555 1-50 (50)
70 KOG3785 Uncharacterized conser 99.2 1.8E-07 3.9E-12 85.4 31.5 396 117-556 35-474 (557)
71 KOG4162 Predicted calmodulin-b 99.2 9E-07 1.9E-11 89.0 36.6 378 136-537 319-783 (799)
72 KOG1174 Anaphase-promoting com 99.1 3.2E-06 6.9E-11 79.0 37.2 270 259-538 228-501 (564)
73 KOG1173 Anaphase-promoting com 99.1 1.1E-07 2.3E-12 92.2 28.6 282 227-518 243-532 (611)
74 KOG2376 Signal recognition par 99.1 2.1E-06 4.5E-11 83.9 36.8 401 118-557 26-506 (652)
75 KOG1840 Kinesin light chain [C 99.1 5.1E-08 1.1E-12 97.0 26.4 237 299-535 200-477 (508)
76 KOG1840 Kinesin light chain [C 99.1 5.3E-08 1.1E-12 96.9 26.5 238 263-500 199-477 (508)
77 KOG1174 Anaphase-promoting com 99.1 6.2E-07 1.4E-11 83.6 29.9 304 147-477 203-509 (564)
78 COG3063 PilF Tfp pilus assembl 99.1 2E-07 4.2E-12 80.4 24.7 194 337-534 39-233 (250)
79 PRK11189 lipoprotein NlpI; Pro 99.1 1.8E-07 3.9E-12 89.2 27.3 217 120-363 42-266 (296)
80 COG3063 PilF Tfp pilus assembl 99.1 2.7E-07 6E-12 79.6 24.6 197 143-361 38-235 (250)
81 cd05804 StaR_like StaR_like; a 99.1 2.1E-06 4.6E-11 84.8 35.3 202 191-397 4-215 (355)
82 PRK11189 lipoprotein NlpI; Pro 99.1 3.8E-07 8.1E-12 87.0 28.4 216 243-467 41-265 (296)
83 cd05804 StaR_like StaR_like; a 99.0 3.1E-06 6.7E-11 83.7 35.8 204 139-362 5-215 (355)
84 KOG2376 Signal recognition par 99.0 1.4E-05 3E-10 78.3 37.6 377 116-534 58-517 (652)
85 KOG0548 Molecular co-chaperone 99.0 1.6E-06 3.5E-11 83.8 30.5 405 112-555 10-471 (539)
86 KOG3785 Uncharacterized conser 99.0 4.1E-07 9E-12 83.0 24.4 391 116-553 69-504 (557)
87 KOG4340 Uncharacterized conser 99.0 6.9E-07 1.5E-11 79.7 24.7 291 196-498 13-335 (459)
88 PRK04841 transcriptional regul 99.0 1.4E-05 3.1E-10 89.5 40.4 337 201-537 382-760 (903)
89 KOG4162 Predicted calmodulin-b 98.9 1.7E-05 3.8E-10 80.1 35.8 375 105-502 322-783 (799)
90 KOG4340 Uncharacterized conser 98.9 1.7E-06 3.7E-11 77.3 25.6 291 143-463 13-335 (459)
91 PF04733 Coatomer_E: Coatomer 98.9 1.1E-07 2.5E-12 89.2 18.3 252 200-467 8-265 (290)
92 KOG3617 WD40 and TPR repeat-co 98.9 4.2E-05 9E-10 77.7 34.5 385 90-561 756-1189(1416)
93 PRK04841 transcriptional regul 98.8 4.8E-05 1E-09 85.2 39.8 309 195-503 411-761 (903)
94 KOG0624 dsRNA-activated protei 98.8 8.9E-05 1.9E-09 68.0 34.1 302 140-467 38-370 (504)
95 KOG0985 Vesicle coat protein c 98.8 3.4E-05 7.4E-10 80.0 33.4 285 141-463 937-1245(1666)
96 PLN02789 farnesyltranstransfer 98.8 1.3E-05 2.8E-10 76.4 27.6 214 196-415 40-267 (320)
97 KOG0985 Vesicle coat protein c 98.8 0.00015 3.2E-09 75.5 36.2 355 137-528 981-1374(1666)
98 PLN02789 farnesyltranstransfer 98.8 1.2E-05 2.7E-10 76.5 27.4 209 148-380 45-267 (320)
99 PF04733 Coatomer_E: Coatomer 98.8 3.4E-07 7.5E-12 86.0 16.4 250 236-501 9-264 (290)
100 KOG1914 mRNA cleavage and poly 98.8 0.00015 3.3E-09 70.5 33.7 127 406-534 369-498 (656)
101 KOG0624 dsRNA-activated protei 98.7 8.3E-05 1.8E-09 68.2 29.5 301 194-502 39-370 (504)
102 KOG1914 mRNA cleavage and poly 98.7 0.00035 7.5E-09 68.1 37.0 400 137-560 17-489 (656)
103 KOG1125 TPR repeat-containing 98.7 3.9E-06 8.4E-11 82.0 21.3 253 272-531 294-565 (579)
104 KOG1125 TPR repeat-containing 98.7 4E-06 8.7E-11 81.9 20.8 89 201-291 293-381 (579)
105 PF12854 PPR_1: PPR repeat 98.6 5.2E-08 1.1E-12 58.3 4.0 32 503-534 2-33 (34)
106 KOG1128 Uncharacterized conser 98.6 1.7E-05 3.7E-10 79.7 23.7 238 225-483 395-633 (777)
107 KOG1070 rRNA processing protei 98.6 5.3E-05 1.1E-09 81.3 28.0 226 297-527 1457-1690(1710)
108 PF12854 PPR_1: PPR repeat 98.6 7.4E-08 1.6E-12 57.6 4.1 32 258-289 2-33 (34)
109 KOG3617 WD40 and TPR repeat-co 98.6 0.0011 2.4E-08 67.8 35.2 130 138-287 856-991 (1416)
110 KOG1070 rRNA processing protei 98.6 4.7E-05 1E-09 81.7 27.0 236 262-501 1457-1699(1710)
111 KOG1128 Uncharacterized conser 98.6 2.3E-05 5E-10 78.8 23.3 215 302-537 402-616 (777)
112 KOG0548 Molecular co-chaperone 98.6 0.00017 3.8E-09 70.2 28.2 355 147-537 9-421 (539)
113 KOG1127 TPR repeat-containing 98.6 0.00017 3.7E-09 75.1 29.5 389 116-533 470-909 (1238)
114 KOG3616 Selective LIM binding 98.5 5.2E-05 1.1E-09 76.0 24.6 265 198-499 620-908 (1636)
115 COG5010 TadD Flp pilus assembl 98.5 1.8E-05 3.8E-10 70.1 18.9 165 190-359 64-228 (257)
116 KOG2053 Mitochondrial inherita 98.5 0.0021 4.5E-08 66.7 41.9 222 118-363 23-256 (932)
117 TIGR03302 OM_YfiO outer membra 98.5 2.9E-05 6.3E-10 71.6 21.3 188 191-397 31-232 (235)
118 KOG3081 Vesicle coat complex C 98.5 0.0001 2.2E-09 65.3 22.9 250 200-466 15-270 (299)
119 PRK15179 Vi polysaccharide bio 98.5 9.3E-05 2E-09 77.9 26.7 133 367-502 85-217 (694)
120 TIGR03302 OM_YfiO outer membra 98.5 2.9E-05 6.3E-10 71.6 20.8 187 331-537 31-232 (235)
121 PRK14720 transcript cleavage f 98.5 0.00014 3.1E-09 77.3 27.5 59 230-290 118-176 (906)
122 PRK10370 formate-dependent nit 98.5 4.8E-05 1E-09 67.5 20.7 126 346-475 52-180 (198)
123 PRK10370 formate-dependent nit 98.4 6.8E-05 1.5E-09 66.5 20.9 156 340-511 23-181 (198)
124 PRK15179 Vi polysaccharide bio 98.4 8.5E-05 1.8E-09 78.2 24.7 149 187-339 80-228 (694)
125 COG5010 TadD Flp pilus assembl 98.4 9.6E-05 2.1E-09 65.6 21.0 155 374-532 72-226 (257)
126 KOG3616 Selective LIM binding 98.4 0.00042 9.1E-09 69.8 27.6 113 409-534 738-850 (1636)
127 PRK14720 transcript cleavage f 98.4 0.00016 3.4E-09 77.1 25.5 237 227-519 30-268 (906)
128 KOG1127 TPR repeat-containing 98.4 0.00019 4E-09 74.8 25.0 353 176-537 475-879 (1238)
129 KOG3081 Vesicle coat complex C 98.3 0.0011 2.3E-08 59.1 25.1 221 197-432 45-271 (299)
130 PRK15359 type III secretion sy 98.3 5.6E-05 1.2E-09 63.3 16.8 100 192-293 23-122 (144)
131 PRK15359 type III secretion sy 98.3 9.6E-05 2.1E-09 61.9 17.4 92 408-501 29-120 (144)
132 COG4783 Putative Zn-dependent 98.3 0.0016 3.5E-08 63.1 26.8 112 345-459 318-429 (484)
133 COG4783 Putative Zn-dependent 98.2 0.0019 4.1E-08 62.7 26.5 139 307-467 315-454 (484)
134 KOG3060 Uncharacterized conser 98.2 0.0015 3.4E-08 57.7 23.6 187 277-468 26-221 (289)
135 KOG2053 Mitochondrial inherita 98.2 0.014 3E-07 60.9 41.8 71 97-169 36-106 (932)
136 KOG3060 Uncharacterized conser 98.1 0.0035 7.5E-08 55.5 23.4 186 207-397 26-220 (289)
137 TIGR02552 LcrH_SycD type III s 98.1 0.00018 3.9E-09 59.8 15.4 92 408-501 22-113 (135)
138 TIGR02552 LcrH_SycD type III s 98.1 0.00015 3.3E-09 60.2 14.6 96 141-256 18-113 (135)
139 TIGR00756 PPR pentatricopeptid 98.1 7.9E-06 1.7E-10 49.5 4.5 33 510-542 2-34 (35)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00052 1.1E-08 66.9 18.4 124 406-535 172-295 (395)
141 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.7E-10 48.3 4.5 33 509-541 2-34 (34)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0005 1.1E-08 67.1 17.6 122 233-360 174-295 (395)
143 PF09976 TPR_21: Tetratricopep 97.9 0.00055 1.2E-08 57.6 15.1 89 198-288 53-143 (145)
144 PF09976 TPR_21: Tetratricopep 97.9 0.00071 1.5E-08 56.9 15.4 20 513-532 123-142 (145)
145 PF10037 MRP-S27: Mitochondria 97.9 0.00029 6.4E-09 69.0 14.6 121 261-381 64-186 (429)
146 TIGR00756 PPR pentatricopeptid 97.9 2.3E-05 4.9E-10 47.4 4.5 33 440-472 2-34 (35)
147 PF08579 RPM2: Mitochondrial r 97.9 0.00025 5.4E-09 54.3 10.0 77 198-274 30-115 (120)
148 PF08579 RPM2: Mitochondrial r 97.9 0.00029 6.2E-09 54.0 10.4 79 232-310 29-116 (120)
149 PF13812 PPR_3: Pentatricopept 97.8 3E-05 6.4E-10 46.6 4.2 31 265-295 3-33 (34)
150 PF10037 MRP-S27: Mitochondria 97.8 0.00032 6.9E-09 68.7 13.1 124 293-416 61-186 (429)
151 PF01535 PPR: PPR repeat; Int 97.7 4.2E-05 9.2E-10 44.7 3.4 30 510-539 2-31 (31)
152 PF05843 Suf: Suppressor of fo 97.7 0.0011 2.4E-08 62.5 14.3 129 405-536 3-135 (280)
153 PRK10866 outer membrane biogen 97.7 0.028 6.2E-07 51.6 23.2 61 198-258 37-99 (243)
154 PRK10866 outer membrane biogen 97.6 0.018 3.9E-07 52.9 21.0 181 110-325 38-239 (243)
155 cd00189 TPR Tetratricopeptide 97.6 0.0012 2.6E-08 50.3 11.6 91 443-535 5-95 (100)
156 cd00189 TPR Tetratricopeptide 97.6 0.0014 3.1E-08 49.8 12.0 93 407-501 4-96 (100)
157 PF06239 ECSIT: Evolutionarily 97.6 0.0015 3.4E-08 56.7 12.7 86 262-347 46-152 (228)
158 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0029 6.4E-08 50.9 14.0 99 195-293 4-106 (119)
159 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0032 6.9E-08 50.7 14.1 19 446-464 47-65 (119)
160 PF05843 Suf: Suppressor of fo 97.6 0.003 6.5E-08 59.6 15.6 130 334-467 2-136 (280)
161 PF06239 ECSIT: Evolutionarily 97.6 0.0017 3.6E-08 56.5 12.4 103 192-313 46-153 (228)
162 PRK15363 pathogenicity island 97.5 0.0044 9.6E-08 51.4 13.9 93 337-431 39-131 (157)
163 PF04840 Vps16_C: Vps16, C-ter 97.5 0.089 1.9E-06 50.3 26.5 109 405-533 179-287 (319)
164 PF01535 PPR: PPR repeat; Int 97.5 0.00014 3E-09 42.5 3.4 29 195-223 2-30 (31)
165 KOG1130 Predicted G-alpha GTPa 97.5 0.0028 6.2E-08 59.8 13.3 111 236-347 25-149 (639)
166 PLN03088 SGT1, suppressor of 97.5 0.0042 9.1E-08 60.8 15.4 87 413-501 12-98 (356)
167 PRK15363 pathogenicity island 97.5 0.0048 1E-07 51.2 13.2 96 405-502 37-132 (157)
168 PRK02603 photosystem I assembl 97.5 0.0099 2.2E-07 51.6 16.1 82 406-488 38-121 (172)
169 PF07079 DUF1347: Protein of u 97.4 0.13 2.8E-06 49.8 40.4 126 415-548 391-530 (549)
170 PLN03088 SGT1, suppressor of 97.4 0.0038 8.3E-08 61.1 14.3 91 147-257 9-99 (356)
171 PRK02603 photosystem I assembl 97.4 0.0082 1.8E-07 52.1 15.0 95 138-249 33-127 (172)
172 CHL00033 ycf3 photosystem I as 97.4 0.0031 6.7E-08 54.6 12.1 83 140-239 35-117 (168)
173 KOG0550 Molecular chaperone (D 97.4 0.032 6.8E-07 53.2 18.9 260 199-467 55-350 (486)
174 PF12895 Apc3: Anaphase-promot 97.4 0.00036 7.8E-09 52.3 5.2 82 117-218 2-83 (84)
175 PF14938 SNAP: Soluble NSF att 97.4 0.027 5.9E-07 53.3 19.1 172 195-397 37-225 (282)
176 PF12895 Apc3: Anaphase-promot 97.4 0.00048 1E-08 51.6 5.8 80 452-533 3-83 (84)
177 KOG2041 WD40 repeat protein [G 97.3 0.26 5.6E-06 50.3 27.5 123 189-323 688-821 (1189)
178 CHL00033 ycf3 photosystem I as 97.3 0.0063 1.4E-07 52.6 12.8 62 405-466 37-100 (168)
179 KOG1130 Predicted G-alpha GTPa 97.3 0.0059 1.3E-07 57.8 13.0 266 200-466 24-343 (639)
180 KOG2041 WD40 repeat protein [G 97.3 0.28 6.1E-06 50.1 27.8 130 138-288 690-821 (1189)
181 PF13525 YfiO: Outer membrane 97.3 0.04 8.8E-07 49.2 17.9 182 195-387 7-197 (203)
182 PF13525 YfiO: Outer membrane 97.2 0.031 6.8E-07 49.9 17.0 178 139-353 4-198 (203)
183 PRK10153 DNA-binding transcrip 97.2 0.039 8.5E-07 56.6 19.5 135 364-501 333-481 (517)
184 PF14938 SNAP: Soluble NSF att 97.2 0.017 3.6E-07 54.7 15.7 174 142-362 37-225 (282)
185 KOG2796 Uncharacterized conser 97.1 0.12 2.6E-06 46.3 18.8 132 230-362 179-315 (366)
186 PRK10153 DNA-binding transcrip 97.1 0.054 1.2E-06 55.6 19.5 145 327-477 331-490 (517)
187 PF12688 TPR_5: Tetratrico pep 97.1 0.018 4E-07 46.0 12.8 57 410-466 8-66 (120)
188 PF14559 TPR_19: Tetratricopep 97.1 0.002 4.3E-08 45.9 6.7 33 190-222 22-54 (68)
189 KOG0550 Molecular chaperone (D 97.1 0.29 6.4E-06 46.9 24.2 259 148-432 57-350 (486)
190 COG4235 Cytochrome c biogenesi 97.1 0.04 8.6E-07 50.7 16.0 99 437-537 155-256 (287)
191 KOG0553 TPR repeat-containing 97.0 0.01 2.2E-07 54.2 11.5 103 376-482 89-191 (304)
192 KOG2796 Uncharacterized conser 97.0 0.23 5E-06 44.6 21.5 239 140-397 69-315 (366)
193 KOG0553 TPR repeat-containing 97.0 0.017 3.6E-07 52.8 12.8 100 202-305 90-189 (304)
194 PF12688 TPR_5: Tetratrico pep 97.0 0.057 1.2E-06 43.1 14.5 106 199-308 7-116 (120)
195 COG4700 Uncharacterized protei 97.0 0.19 4.1E-06 42.7 18.6 132 226-359 87-219 (251)
196 KOG1538 Uncharacterized conser 97.0 0.23 5E-06 50.2 21.0 22 481-502 825-846 (1081)
197 PF14559 TPR_19: Tetratricopep 96.9 0.003 6.5E-08 44.9 6.1 52 205-257 3-54 (68)
198 PF13281 DUF4071: Domain of un 96.9 0.27 5.9E-06 47.5 20.4 80 335-414 143-228 (374)
199 PF13432 TPR_16: Tetratricopep 96.9 0.0045 9.7E-08 43.6 6.5 56 200-256 4-59 (65)
200 PF13432 TPR_16: Tetratricopep 96.8 0.0071 1.5E-07 42.5 7.4 52 413-465 7-58 (65)
201 PF03704 BTAD: Bacterial trans 96.8 0.029 6.2E-07 47.2 12.3 73 474-547 63-140 (146)
202 COG4700 Uncharacterized protei 96.8 0.27 5.9E-06 41.7 18.9 134 365-500 86-220 (251)
203 PF13414 TPR_11: TPR repeat; P 96.8 0.006 1.3E-07 43.5 6.7 63 193-256 3-66 (69)
204 PRK10803 tol-pal system protei 96.8 0.027 5.9E-07 52.2 12.5 89 204-292 154-246 (263)
205 COG4235 Cytochrome c biogenesi 96.8 0.097 2.1E-06 48.2 15.7 99 402-502 155-256 (287)
206 PF13414 TPR_11: TPR repeat; P 96.8 0.0088 1.9E-07 42.7 7.5 60 440-500 5-65 (69)
207 COG3898 Uncharacterized membra 96.7 0.64 1.4E-05 44.4 32.7 280 241-537 97-392 (531)
208 PRK10803 tol-pal system protei 96.7 0.038 8.3E-07 51.2 12.7 88 414-501 154-245 (263)
209 PF04840 Vps16_C: Vps16, C-ter 96.7 0.66 1.4E-05 44.5 28.2 107 370-496 179-285 (319)
210 COG3898 Uncharacterized membra 96.6 0.71 1.5E-05 44.1 34.0 308 118-467 67-392 (531)
211 KOG2114 Vacuolar assembly/sort 96.4 1.7 3.6E-05 45.9 24.5 184 139-360 333-517 (933)
212 COG5107 RNA14 Pre-mRNA 3'-end 96.4 1.1 2.4E-05 43.7 32.8 143 403-551 397-543 (660)
213 PF03704 BTAD: Bacterial trans 96.4 0.2 4.3E-06 42.0 14.4 71 440-511 64-139 (146)
214 PRK15331 chaperone protein Sic 96.3 0.36 7.8E-06 40.5 15.0 90 410-501 44-133 (165)
215 KOG1585 Protein required for f 96.3 0.56 1.2E-05 41.8 16.7 208 139-391 30-250 (308)
216 COG4105 ComL DNA uptake lipopr 96.3 0.79 1.7E-05 41.4 21.9 179 114-327 44-233 (254)
217 COG4105 ComL DNA uptake lipopr 96.2 0.86 1.9E-05 41.2 20.3 81 143-239 37-117 (254)
218 PRK15331 chaperone protein Sic 96.2 0.21 4.5E-06 41.9 12.9 89 341-431 45-133 (165)
219 PF13371 TPR_9: Tetratricopept 96.2 0.032 6.9E-07 40.2 7.4 55 202-257 4-58 (73)
220 COG3118 Thioredoxin domain-con 96.1 1.2 2.5E-05 41.2 18.0 143 148-312 142-286 (304)
221 PF13424 TPR_12: Tetratricopep 96.0 0.023 5E-07 41.6 6.2 60 475-534 7-72 (78)
222 PF04053 Coatomer_WDAD: Coatom 96.0 0.24 5.3E-06 49.7 15.1 168 103-323 260-427 (443)
223 PF12921 ATP13: Mitochondrial 96.0 0.12 2.6E-06 41.7 10.6 82 437-518 1-98 (126)
224 PF13371 TPR_9: Tetratricopept 96.0 0.055 1.2E-06 38.9 8.0 53 448-501 5-57 (73)
225 COG1729 Uncharacterized protei 95.9 0.15 3.3E-06 46.3 11.9 99 142-257 144-244 (262)
226 KOG1920 IkappaB kinase complex 95.8 3.9 8.5E-05 45.0 27.9 28 229-256 791-820 (1265)
227 PF12921 ATP13: Mitochondrial 95.8 0.17 3.6E-06 40.9 10.6 49 329-377 48-97 (126)
228 PF09205 DUF1955: Domain of un 95.8 0.79 1.7E-05 36.6 13.7 57 411-468 94-150 (161)
229 PF13424 TPR_12: Tetratricopep 95.7 0.036 7.9E-07 40.6 6.1 62 440-501 7-74 (78)
230 COG1729 Uncharacterized protei 95.7 0.25 5.5E-06 44.9 12.2 97 195-292 144-244 (262)
231 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.18 3.9E-06 49.5 12.0 68 189-257 71-141 (453)
232 KOG1538 Uncharacterized conser 95.6 1.3 2.7E-05 45.2 17.6 206 282-538 619-847 (1081)
233 PF13281 DUF4071: Domain of un 95.5 2.6 5.6E-05 41.0 21.7 20 272-291 150-169 (374)
234 KOG3941 Intermediate in Toll s 95.4 0.15 3.2E-06 46.2 9.7 34 315-348 140-173 (406)
235 KOG2280 Vacuolar assembly/sort 95.4 4.1 8.9E-05 42.6 24.8 313 197-533 441-795 (829)
236 PF10300 DUF3808: Protein of u 95.4 1.1 2.3E-05 45.8 17.3 151 123-292 176-334 (468)
237 COG5107 RNA14 Pre-mRNA 3'-end 95.4 3 6.5E-05 40.8 23.6 146 333-484 397-546 (660)
238 KOG3941 Intermediate in Toll s 95.4 0.15 3.2E-06 46.3 9.5 36 349-384 139-174 (406)
239 PF04053 Coatomer_WDAD: Coatom 95.4 0.46 9.9E-06 47.8 14.2 157 200-392 268-426 (443)
240 PF10300 DUF3808: Protein of u 95.3 1.5 3.3E-05 44.7 18.2 162 371-535 191-374 (468)
241 PF09205 DUF1955: Domain of un 95.3 1.2 2.6E-05 35.7 14.5 62 372-434 90-151 (161)
242 KOG2280 Vacuolar assembly/sort 95.3 4.6 9.9E-05 42.2 26.9 113 365-496 681-793 (829)
243 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.41 8.9E-06 47.1 12.8 64 402-467 74-141 (453)
244 KOG1920 IkappaB kinase complex 95.2 4.5 9.7E-05 44.6 21.1 28 194-221 791-820 (1265)
245 smart00299 CLH Clathrin heavy 95.1 1.6 3.4E-05 36.2 15.1 125 197-344 11-136 (140)
246 KOG0543 FKBP-type peptidyl-pro 95.1 0.85 1.8E-05 43.9 14.2 140 374-537 214-355 (397)
247 KOG0543 FKBP-type peptidyl-pro 95.1 0.55 1.2E-05 45.2 12.8 95 370-466 259-354 (397)
248 PF08631 SPO22: Meiosis protei 94.7 3.8 8.3E-05 38.6 26.2 162 370-534 86-272 (278)
249 PF13428 TPR_14: Tetratricopep 94.7 0.12 2.6E-06 32.8 5.4 40 194-234 2-41 (44)
250 KOG4555 TPR repeat-containing 94.6 1.4 3E-05 35.2 11.8 93 200-293 50-145 (175)
251 smart00299 CLH Clathrin heavy 94.5 2.4 5.1E-05 35.1 15.7 8 488-495 111-118 (140)
252 PRK11906 transcriptional regul 94.4 5.2 0.00011 39.8 17.9 145 384-533 274-432 (458)
253 COG1747 Uncharacterized N-term 94.3 6.5 0.00014 39.3 20.6 180 138-343 64-249 (711)
254 COG3629 DnrI DNA-binding trans 94.2 0.29 6.3E-06 45.3 8.7 78 194-272 154-236 (280)
255 COG0457 NrfG FOG: TPR repeat [ 94.2 3.9 8.5E-05 36.6 30.9 222 277-501 37-264 (291)
256 KOG1941 Acetylcholine receptor 94.1 2.4 5.1E-05 40.3 14.2 229 273-501 16-274 (518)
257 PF04184 ST7: ST7 protein; In 94.1 2.8 6.1E-05 41.7 15.4 64 228-291 259-323 (539)
258 PF07035 Mic1: Colon cancer-as 93.9 3.5 7.7E-05 35.0 15.5 136 389-538 15-150 (167)
259 KOG4555 TPR repeat-containing 93.9 2.7 5.9E-05 33.6 12.7 94 146-258 49-145 (175)
260 PF13512 TPR_18: Tetratricopep 93.8 1.3 2.8E-05 36.3 10.8 66 143-224 13-78 (142)
261 COG0457 NrfG FOG: TPR repeat [ 93.8 4.7 0.0001 36.0 31.1 224 242-467 37-265 (291)
262 COG3118 Thioredoxin domain-con 93.8 5.7 0.00012 36.9 18.6 148 235-385 141-289 (304)
263 PF13512 TPR_18: Tetratricopep 93.8 2.4 5.3E-05 34.8 12.2 84 194-277 11-96 (142)
264 KOG2114 Vacuolar assembly/sort 93.7 0.94 2E-05 47.6 12.0 178 301-499 337-516 (933)
265 KOG1941 Acetylcholine receptor 93.7 3 6.6E-05 39.6 14.2 229 237-466 15-274 (518)
266 COG4649 Uncharacterized protei 93.5 4.2 9.1E-05 34.4 14.0 135 139-291 58-195 (221)
267 PRK11906 transcriptional regul 93.4 5.9 0.00013 39.4 16.3 64 191-255 336-399 (458)
268 COG4649 Uncharacterized protei 93.0 4.9 0.00011 34.0 15.2 125 203-327 68-196 (221)
269 KOG1550 Extracellular protein 93.0 13 0.00029 38.9 25.2 187 120-330 228-429 (552)
270 KOG1550 Extracellular protein 93.0 14 0.00029 38.9 24.9 274 244-538 228-539 (552)
271 PF04184 ST7: ST7 protein; In 92.9 11 0.00024 37.7 21.3 60 372-431 263-323 (539)
272 KOG2610 Uncharacterized conser 92.9 3.3 7.1E-05 38.9 12.9 154 204-359 114-273 (491)
273 KOG2610 Uncharacterized conser 92.9 6.6 0.00014 37.0 14.8 162 143-325 106-274 (491)
274 PF07035 Mic1: Colon cancer-as 92.8 5.4 0.00012 33.9 15.7 134 249-396 15-148 (167)
275 COG3629 DnrI DNA-binding trans 92.6 1.6 3.4E-05 40.6 10.6 78 404-482 154-236 (280)
276 KOG1585 Protein required for f 92.6 7.6 0.00016 34.9 19.1 16 483-498 200-215 (308)
277 PF13428 TPR_14: Tetratricopep 92.1 0.44 9.6E-06 30.1 4.7 29 141-169 2-30 (44)
278 KOG1258 mRNA processing protei 91.9 16 0.00035 37.4 32.3 183 332-522 296-489 (577)
279 PF10602 RPN7: 26S proteasome 91.9 2.3 5E-05 36.8 10.5 63 194-256 37-101 (177)
280 PF13170 DUF4003: Protein of u 91.9 12 0.00025 35.6 19.3 23 281-303 80-102 (297)
281 PF10602 RPN7: 26S proteasome 91.9 2.2 4.8E-05 37.0 10.4 63 264-326 37-101 (177)
282 KOG0403 Neoplastic transformat 91.8 14 0.0003 36.4 16.7 62 477-539 513-574 (645)
283 PF07079 DUF1347: Protein of u 91.8 14 0.00031 36.5 36.0 381 105-513 80-530 (549)
284 PF04097 Nic96: Nup93/Nic96; 91.8 20 0.00044 38.1 21.0 28 142-169 113-140 (613)
285 PRK09687 putative lyase; Provi 91.0 14 0.0003 34.8 28.8 234 297-555 36-279 (280)
286 PF08631 SPO22: Meiosis protei 90.6 15 0.00033 34.6 26.5 130 151-292 4-150 (278)
287 PF13176 TPR_7: Tetratricopept 90.5 0.61 1.3E-05 28.0 4.0 25 196-220 2-26 (36)
288 PF09613 HrpB1_HrpK: Bacterial 90.3 10 0.00022 31.9 13.5 21 202-222 53-73 (160)
289 PF13176 TPR_7: Tetratricopept 89.9 0.82 1.8E-05 27.4 4.2 26 510-535 1-26 (36)
290 COG4785 NlpI Lipoprotein NlpI, 89.7 14 0.0003 32.7 17.1 68 189-257 95-162 (297)
291 PF13170 DUF4003: Protein of u 89.1 21 0.00045 33.9 21.0 23 351-373 80-102 (297)
292 PF13431 TPR_17: Tetratricopep 89.0 0.49 1.1E-05 28.0 2.7 26 189-214 9-34 (34)
293 KOG0292 Vesicle coat complex C 89.0 37 0.0008 36.7 22.9 107 449-555 1002-1132(1202)
294 PF09613 HrpB1_HrpK: Bacterial 88.6 14 0.0003 31.2 12.7 52 414-467 21-73 (160)
295 PF13929 mRNA_stabil: mRNA sta 88.2 22 0.00048 33.1 15.3 133 419-551 144-286 (292)
296 COG3947 Response regulator con 88.0 23 0.00049 33.0 16.2 44 120-166 149-192 (361)
297 PF02284 COX5A: Cytochrome c o 87.2 11 0.00025 28.7 9.4 47 421-467 28-74 (108)
298 cd00923 Cyt_c_Oxidase_Va Cytoc 87.0 5.4 0.00012 30.0 7.5 44 422-465 26-69 (103)
299 KOG1258 mRNA processing protei 86.9 40 0.00088 34.7 34.5 385 123-554 64-486 (577)
300 KOG4570 Uncharacterized conser 86.3 12 0.00025 35.1 10.8 102 329-432 60-164 (418)
301 PF13431 TPR_17: Tetratricopep 86.1 0.92 2E-05 26.8 2.7 22 227-248 12-33 (34)
302 PF11207 DUF2989: Protein of u 86.0 7.3 0.00016 34.1 9.0 72 350-422 123-197 (203)
303 TIGR02561 HrpB1_HrpK type III 85.8 19 0.00041 29.8 12.1 22 202-223 53-74 (153)
304 PF07575 Nucleopor_Nup85: Nup8 85.6 22 0.00048 37.5 14.4 25 141-165 149-173 (566)
305 COG3947 Response regulator con 85.5 31 0.00068 32.1 16.4 59 336-395 282-340 (361)
306 KOG4570 Uncharacterized conser 85.1 11 0.00023 35.4 9.9 104 363-468 59-165 (418)
307 KOG4234 TPR repeat-containing 85.0 9 0.00019 33.4 8.9 91 147-257 102-197 (271)
308 PRK09687 putative lyase; Provi 84.8 35 0.00076 32.1 29.2 17 402-418 205-221 (280)
309 KOG4234 TPR repeat-containing 84.8 14 0.00031 32.2 10.0 92 410-502 102-197 (271)
310 COG2909 MalT ATP-dependent tra 84.7 65 0.0014 35.0 31.8 330 157-498 298-684 (894)
311 PF02259 FAT: FAT domain; Int 84.2 43 0.00094 32.6 25.9 54 146-221 4-57 (352)
312 PF00515 TPR_1: Tetratricopept 83.8 2.7 5.9E-05 24.4 4.1 28 195-222 3-30 (34)
313 PF13374 TPR_10: Tetratricopep 83.8 3 6.4E-05 25.5 4.5 28 509-536 3-30 (42)
314 KOG0276 Vesicle coat complex C 83.4 16 0.00034 37.5 11.1 135 140-325 614-748 (794)
315 cd00923 Cyt_c_Oxidase_Va Cytoc 82.6 15 0.00033 27.8 8.1 60 455-515 24-83 (103)
316 PF02284 COX5A: Cytochrome c o 82.2 11 0.00024 28.8 7.4 60 456-516 28-87 (108)
317 COG4785 NlpI Lipoprotein NlpI, 81.7 38 0.00081 30.1 18.8 178 120-327 81-266 (297)
318 KOG0890 Protein kinase of the 81.6 1.4E+02 0.003 36.6 26.7 319 198-537 1388-1731(2382)
319 PF07719 TPR_2: Tetratricopept 81.6 4 8.6E-05 23.6 4.2 28 195-222 3-30 (34)
320 KOG0276 Vesicle coat complex C 81.4 27 0.00058 36.0 11.8 99 379-498 648-746 (794)
321 KOG2066 Vacuolar assembly/sort 81.2 82 0.0018 33.7 27.2 152 200-361 363-533 (846)
322 KOG2063 Vacuolar assembly/sort 80.7 57 0.0012 35.9 14.9 115 336-450 507-638 (877)
323 PF00515 TPR_1: Tetratricopept 80.7 5.6 0.00012 23.0 4.6 19 481-499 9-27 (34)
324 KOG1464 COP9 signalosome, subu 80.3 48 0.001 30.5 17.0 159 119-290 42-218 (440)
325 TIGR02561 HrpB1_HrpK type III 80.2 33 0.00071 28.5 12.9 50 241-292 23-73 (153)
326 PF13374 TPR_10: Tetratricopep 80.2 4.9 0.00011 24.5 4.5 28 474-501 3-30 (42)
327 PF10345 Cohesin_load: Cohesin 80.0 89 0.0019 33.4 41.1 407 112-535 68-604 (608)
328 COG1747 Uncharacterized N-term 79.5 75 0.0016 32.2 26.1 162 334-502 67-234 (711)
329 COG2909 MalT ATP-dependent tra 79.5 1E+02 0.0022 33.7 27.4 262 269-533 366-684 (894)
330 KOG2066 Vacuolar assembly/sort 79.4 94 0.002 33.3 29.0 53 117-169 369-421 (846)
331 PF06552 TOM20_plant: Plant sp 79.4 22 0.00047 30.6 9.1 101 122-238 9-123 (186)
332 PF11207 DUF2989: Protein of u 79.4 31 0.00068 30.3 10.3 41 312-352 154-197 (203)
333 COG4455 ImpE Protein of avirul 78.6 17 0.00038 32.2 8.5 55 304-359 7-61 (273)
334 COG4455 ImpE Protein of avirul 78.6 16 0.00036 32.3 8.3 77 405-482 3-81 (273)
335 PHA02875 ankyrin repeat protei 78.5 56 0.0012 32.9 13.9 75 239-321 10-88 (413)
336 PF07719 TPR_2: Tetratricopept 78.4 7.3 0.00016 22.4 4.6 21 480-500 8-28 (34)
337 PF00637 Clathrin: Region in C 78.2 0.86 1.9E-05 37.9 0.6 83 199-288 13-95 (143)
338 KOG0890 Protein kinase of the 77.9 1.8E+02 0.0039 35.7 27.5 149 113-287 1392-1542(2382)
339 PF00637 Clathrin: Region in C 77.1 0.61 1.3E-05 38.9 -0.6 82 410-498 14-95 (143)
340 KOG2471 TPR repeat-containing 76.9 65 0.0014 32.4 12.7 107 377-485 249-381 (696)
341 PF02259 FAT: FAT domain; Int 76.9 76 0.0016 30.9 25.7 53 235-291 5-57 (352)
342 PF07721 TPR_4: Tetratricopept 76.6 4 8.7E-05 22.2 2.8 22 196-217 4-25 (26)
343 PRK15180 Vi polysaccharide bio 75.7 92 0.002 31.3 28.7 124 164-292 297-420 (831)
344 COG0790 FOG: TPR repeat, SEL1 75.2 75 0.0016 30.0 22.4 150 116-293 53-221 (292)
345 TIGR03504 FimV_Cterm FimV C-te 75.2 6.7 0.00015 24.8 3.9 23 479-501 5-27 (44)
346 PF13181 TPR_8: Tetratricopept 74.9 8.3 0.00018 22.2 4.2 27 195-221 3-29 (34)
347 KOG0991 Replication factor C, 74.7 66 0.0014 29.1 13.3 137 372-518 134-282 (333)
348 PRK11619 lytic murein transgly 74.3 1.3E+02 0.0028 32.3 41.3 229 190-430 126-373 (644)
349 PF13181 TPR_8: Tetratricopept 73.7 10 0.00022 21.8 4.4 27 510-536 3-29 (34)
350 PF10345 Cohesin_load: Cohesin 73.7 1.3E+02 0.0029 32.1 37.8 193 119-325 36-252 (608)
351 COG2976 Uncharacterized protei 73.4 63 0.0014 28.3 15.3 88 446-538 97-189 (207)
352 TIGR03504 FimV_Cterm FimV C-te 73.2 8.8 0.00019 24.3 4.0 24 514-537 5-28 (44)
353 PHA02875 ankyrin repeat protei 73.1 70 0.0015 32.1 13.0 208 202-438 8-230 (413)
354 PF13762 MNE1: Mitochondrial s 72.4 55 0.0012 27.1 10.5 82 476-557 42-129 (145)
355 KOG4648 Uncharacterized conser 72.4 12 0.00025 35.5 6.3 89 410-501 104-193 (536)
356 PF07163 Pex26: Pex26 protein; 72.3 84 0.0018 29.2 13.4 123 197-321 39-181 (309)
357 KOG2063 Vacuolar assembly/sort 72.1 1.7E+02 0.0036 32.5 17.3 40 306-345 599-638 (877)
358 PF07163 Pex26: Pex26 protein; 71.8 61 0.0013 30.1 10.5 88 304-391 89-181 (309)
359 KOG0687 26S proteasome regulat 71.8 94 0.002 29.6 15.3 92 441-534 107-207 (393)
360 PF13174 TPR_6: Tetratricopept 71.1 7.2 0.00016 22.2 3.3 25 198-222 5-29 (33)
361 PF08424 NRDE-2: NRDE-2, neces 70.9 1E+02 0.0022 29.7 17.0 65 189-254 61-128 (321)
362 PF11848 DUF3368: Domain of un 70.8 16 0.00035 23.6 5.0 33 519-551 13-45 (48)
363 PF13174 TPR_6: Tetratricopept 69.7 10 0.00022 21.5 3.7 15 485-499 12-26 (33)
364 PF10579 Rapsyn_N: Rapsyn N-te 69.2 17 0.00037 26.3 5.2 46 485-530 18-65 (80)
365 KOG4648 Uncharacterized conser 68.8 35 0.00076 32.5 8.5 94 375-472 104-197 (536)
366 PF13929 mRNA_stabil: mRNA sta 68.6 1E+02 0.0023 28.8 17.9 62 330-391 199-261 (292)
367 KOG4077 Cytochrome c oxidase, 68.5 39 0.00085 27.1 7.4 46 422-467 68-113 (149)
368 TIGR02508 type_III_yscG type I 68.0 53 0.0011 25.2 8.4 13 414-426 50-62 (115)
369 KOG0686 COP9 signalosome, subu 66.9 1.4E+02 0.003 29.5 14.9 63 194-256 151-215 (466)
370 PF07575 Nucleopor_Nup85: Nup8 65.1 1.9E+02 0.0041 30.6 16.7 33 520-552 507-539 (566)
371 PF06552 TOM20_plant: Plant sp 64.3 85 0.0018 27.1 9.3 27 455-483 97-123 (186)
372 KOG4521 Nuclear pore complex, 64.0 2.6E+02 0.0057 31.8 15.4 126 263-390 983-1124(1480)
373 COG5159 RPN6 26S proteasome re 63.8 1.3E+02 0.0028 28.1 16.6 50 270-319 10-66 (421)
374 PF08424 NRDE-2: NRDE-2, neces 63.5 1.5E+02 0.0032 28.7 18.3 100 365-466 16-130 (321)
375 PF10475 DUF2450: Protein of u 63.1 1.3E+02 0.0028 28.5 11.7 51 234-290 104-154 (291)
376 PF10579 Rapsyn_N: Rapsyn N-te 61.3 28 0.0006 25.3 5.0 47 450-496 18-66 (80)
377 COG0790 FOG: TPR repeat, SEL1 60.7 1.5E+02 0.0033 27.9 25.0 150 205-363 53-221 (292)
378 TIGR02508 type_III_yscG type I 60.1 76 0.0017 24.3 9.0 50 308-363 49-98 (115)
379 smart00028 TPR Tetratricopepti 59.6 18 0.00039 19.5 3.5 27 195-221 3-29 (34)
380 COG5159 RPN6 26S proteasome re 59.6 1.5E+02 0.0033 27.7 18.4 199 199-397 9-235 (421)
381 KOG4077 Cytochrome c oxidase, 59.3 83 0.0018 25.3 7.7 59 456-515 67-125 (149)
382 PF11846 DUF3366: Domain of un 57.3 54 0.0012 28.8 7.6 31 505-535 141-171 (193)
383 COG5187 RPN7 26S proteasome re 57.1 1.7E+02 0.0037 27.4 14.1 97 298-396 115-220 (412)
384 COG2976 Uncharacterized protei 57.1 1.4E+02 0.003 26.3 15.5 89 410-503 96-189 (207)
385 PF04097 Nic96: Nup93/Nic96; 56.0 2.9E+02 0.0062 29.7 15.7 44 197-241 115-158 (613)
386 PF13762 MNE1: Mitochondrial s 55.9 1.2E+02 0.0026 25.2 10.8 46 369-414 80-126 (145)
387 COG5187 RPN7 26S proteasome re 55.3 1.8E+02 0.004 27.2 14.1 100 330-431 112-220 (412)
388 KOG1586 Protein required for f 54.7 1.7E+02 0.0037 26.6 17.2 245 149-415 23-277 (288)
389 KOG4567 GTPase-activating prot 54.4 78 0.0017 29.8 8.0 57 249-310 264-320 (370)
390 PF11846 DUF3366: Domain of un 53.4 39 0.00085 29.7 6.1 54 116-169 120-173 (193)
391 PRK15180 Vi polysaccharide bio 53.2 2.6E+02 0.0056 28.3 29.6 116 118-256 303-419 (831)
392 PF09670 Cas_Cas02710: CRISPR- 52.9 2.1E+02 0.0045 28.4 11.6 53 308-361 141-197 (379)
393 KOG4507 Uncharacterized conser 52.7 1E+02 0.0023 31.8 9.1 103 205-309 619-721 (886)
394 KOG2034 Vacuolar sorting prote 51.3 3.7E+02 0.0081 29.6 27.2 66 201-280 366-433 (911)
395 PF10475 DUF2450: Protein of u 51.3 1.7E+02 0.0038 27.7 10.4 51 270-326 105-155 (291)
396 PRK11619 lytic murein transgly 51.2 3.5E+02 0.0075 29.2 38.7 330 186-532 92-463 (644)
397 COG5108 RPO41 Mitochondrial DN 51.0 91 0.002 32.7 8.5 73 198-273 33-113 (1117)
398 cd00280 TRFH Telomeric Repeat 50.8 1.1E+02 0.0024 26.5 7.7 63 121-183 86-154 (200)
399 COG2812 DnaX DNA polymerase II 50.6 3.1E+02 0.0067 28.5 13.3 101 119-227 179-279 (515)
400 PRK07003 DNA polymerase III su 50.5 3.8E+02 0.0082 29.5 17.4 99 120-226 180-278 (830)
401 COG0735 Fur Fe2+/Zn2+ uptake r 50.5 83 0.0018 26.2 7.1 61 216-277 9-69 (145)
402 KOG0687 26S proteasome regulat 50.1 2.4E+02 0.0052 27.0 18.2 134 259-396 66-209 (393)
403 PF08311 Mad3_BUB1_I: Mad3/BUB 49.8 87 0.0019 25.3 7.0 60 107-166 66-125 (126)
404 KOG4507 Uncharacterized conser 49.3 87 0.0019 32.4 8.0 100 380-481 619-718 (886)
405 KOG4567 GTPase-activating prot 49.3 1.1E+02 0.0024 28.9 8.0 58 213-275 263-320 (370)
406 KOG2034 Vacuolar sorting prote 49.0 4E+02 0.0088 29.3 27.9 49 302-359 508-556 (911)
407 PF14689 SPOB_a: Sensor_kinase 48.8 53 0.0011 22.6 4.8 21 339-359 29-49 (62)
408 PF12862 Apc5: Anaphase-promot 48.8 82 0.0018 23.7 6.4 56 114-169 8-70 (94)
409 PF09986 DUF2225: Uncharacteri 48.4 2E+02 0.0044 25.8 11.1 95 448-542 87-199 (214)
410 PRK14951 DNA polymerase III su 48.2 3.7E+02 0.0081 28.7 14.4 93 125-225 190-282 (618)
411 PF14689 SPOB_a: Sensor_kinase 47.9 52 0.0011 22.6 4.6 23 373-395 28-50 (62)
412 PRK09857 putative transposase; 47.5 1.5E+02 0.0032 28.2 9.2 65 477-542 210-274 (292)
413 PF11848 DUF3368: Domain of un 47.2 76 0.0016 20.4 5.3 28 276-303 15-42 (48)
414 COG0735 Fur Fe2+/Zn2+ uptake r 46.8 1.3E+02 0.0029 25.0 7.8 48 287-335 10-57 (145)
415 KOG4521 Nuclear pore complex, 46.6 5E+02 0.011 29.8 15.8 128 298-427 983-1126(1480)
416 PRK10564 maltose regulon perip 46.3 54 0.0012 30.9 5.8 30 266-295 260-289 (303)
417 PRK10564 maltose regulon perip 46.3 41 0.0009 31.6 5.0 35 296-330 254-289 (303)
418 PRK13342 recombination factor 45.8 3.3E+02 0.0072 27.4 18.9 29 138-168 174-202 (413)
419 PRK08691 DNA polymerase III su 45.8 4.3E+02 0.0093 28.7 15.8 98 121-226 181-278 (709)
420 PRK14956 DNA polymerase III su 45.6 3.6E+02 0.0078 27.8 13.4 39 127-167 189-227 (484)
421 cd08819 CARD_MDA5_2 Caspase ac 45.0 1.3E+02 0.0028 22.4 7.6 62 213-280 22-83 (88)
422 PF02847 MA3: MA3 domain; Int 44.2 1.2E+02 0.0026 23.7 7.0 21 409-429 8-28 (113)
423 PRK10941 hypothetical protein; 43.3 2.8E+02 0.0061 25.9 10.6 60 232-292 185-244 (269)
424 PF11817 Foie-gras_1: Foie gra 43.0 1.3E+02 0.0028 27.7 8.0 57 478-534 183-244 (247)
425 PF10366 Vps39_1: Vacuolar sor 42.7 1.6E+02 0.0035 23.0 7.2 26 476-501 42-67 (108)
426 PF04762 IKI3: IKI3 family; I 42.0 2.8E+02 0.0062 31.4 11.6 196 198-394 699-927 (928)
427 PF12862 Apc5: Anaphase-promot 42.0 1.5E+02 0.0032 22.3 7.2 19 517-535 50-68 (94)
428 KOG2659 LisH motif-containing 41.9 2.6E+02 0.0057 25.2 9.7 102 432-533 20-128 (228)
429 KOG0686 COP9 signalosome, subu 41.5 3.7E+02 0.008 26.7 15.2 65 298-362 150-216 (466)
430 PF05944 Phage_term_smal: Phag 41.4 1.8E+02 0.004 23.7 7.5 32 194-225 49-80 (132)
431 PRK06645 DNA polymerase III su 41.3 4.3E+02 0.0094 27.5 12.5 43 124-168 193-235 (507)
432 PRK09857 putative transposase; 41.1 2.8E+02 0.006 26.4 9.9 61 268-329 211-271 (292)
433 PRK14958 DNA polymerase III su 39.9 4.6E+02 0.0099 27.3 14.7 38 130-169 190-227 (509)
434 cd08819 CARD_MDA5_2 Caspase ac 39.8 1.6E+02 0.0034 22.0 7.6 12 383-394 51-62 (88)
435 KOG0292 Vesicle coat complex C 39.6 4E+02 0.0086 29.5 11.2 158 198-397 625-782 (1202)
436 PF09986 DUF2225: Uncharacteri 39.1 2E+02 0.0044 25.8 8.3 55 120-174 141-199 (214)
437 PF14669 Asp_Glu_race_2: Putat 39.0 2.7E+02 0.0059 24.4 15.6 57 477-533 136-206 (233)
438 KOG2471 TPR repeat-containing 38.8 4.5E+02 0.0097 26.9 14.8 106 413-520 250-381 (696)
439 PRK14962 DNA polymerase III su 37.7 4.7E+02 0.01 26.9 17.6 85 134-226 192-276 (472)
440 PF11663 Toxin_YhaV: Toxin wit 37.5 34 0.00073 27.8 2.7 30 346-377 108-137 (140)
441 PF09454 Vps23_core: Vps23 cor 37.5 1.3E+02 0.0028 21.0 5.3 46 332-378 7-52 (65)
442 PF04190 DUF410: Protein of un 37.4 3.4E+02 0.0075 25.2 19.3 26 261-286 88-113 (260)
443 PF11663 Toxin_YhaV: Toxin wit 37.1 38 0.00083 27.5 2.9 30 206-237 108-137 (140)
444 KOG2396 HAT (Half-A-TPR) repea 37.1 4.8E+02 0.01 26.8 40.6 86 124-231 91-177 (568)
445 KOG4642 Chaperone-dependent E3 36.8 3.4E+02 0.0073 24.9 11.0 116 203-322 20-141 (284)
446 PF02847 MA3: MA3 domain; Int 36.6 1.9E+02 0.0041 22.5 7.0 22 338-359 7-28 (113)
447 PF09477 Type_III_YscG: Bacter 36.3 2.1E+02 0.0045 22.4 9.0 14 384-397 22-35 (116)
448 PF14669 Asp_Glu_race_2: Putat 36.0 3E+02 0.0066 24.2 15.7 56 443-498 137-206 (233)
449 KOG2297 Predicted translation 35.9 3.9E+02 0.0085 25.4 20.7 20 403-422 321-340 (412)
450 PF06957 COPI_C: Coatomer (COP 35.8 4.6E+02 0.01 26.4 10.7 38 146-183 124-161 (422)
451 PF09477 Type_III_YscG: Bacter 35.4 2.2E+02 0.0047 22.3 8.1 79 417-502 20-98 (116)
452 PRK11639 zinc uptake transcrip 35.1 1.9E+02 0.0042 24.8 7.2 58 220-278 18-75 (169)
453 PRK10941 hypothetical protein; 35.0 3.9E+02 0.0084 25.1 11.1 60 442-502 185-244 (269)
454 PF10366 Vps39_1: Vacuolar sor 34.5 2.2E+02 0.0048 22.2 7.7 26 336-361 42-67 (108)
455 KOG1464 COP9 signalosome, subu 34.3 3.9E+02 0.0084 24.9 24.0 247 206-462 40-327 (440)
456 smart00386 HAT HAT (Half-A-TPR 34.1 85 0.0018 17.2 4.2 28 207-235 1-28 (33)
457 PF08311 Mad3_BUB1_I: Mad3/BUB 33.6 2.6E+02 0.0055 22.6 11.9 43 211-253 81-124 (126)
458 PRK13342 recombination factor 33.5 5.1E+02 0.011 26.0 20.3 32 452-483 244-275 (413)
459 PF14853 Fis1_TPR_C: Fis1 C-te 33.1 1.5E+02 0.0032 19.7 5.6 21 447-467 10-30 (53)
460 TIGR01228 hutU urocanate hydra 32.6 2.5E+02 0.0055 28.6 8.2 22 518-539 403-424 (545)
461 cd08315 Death_TRAILR_DR4_DR5 D 32.5 2.3E+02 0.0049 21.6 8.5 83 83-170 11-94 (96)
462 KOG0376 Serine-threonine phosp 32.5 1.2E+02 0.0026 30.6 6.0 107 146-274 10-116 (476)
463 PF09670 Cas_Cas02710: CRISPR- 32.2 5.2E+02 0.011 25.7 13.4 56 376-432 139-198 (379)
464 COG5108 RPO41 Mitochondrial DN 32.0 3.3E+02 0.0071 28.9 9.1 91 233-326 33-131 (1117)
465 KOG2300 Uncharacterized conser 31.8 5.8E+02 0.013 26.1 36.2 375 109-500 52-512 (629)
466 PF04190 DUF410: Protein of un 31.3 4.3E+02 0.0094 24.5 18.9 19 448-466 151-169 (260)
467 PF15297 CKAP2_C: Cytoskeleton 31.1 5E+02 0.011 25.2 10.2 64 454-519 119-186 (353)
468 PRK08691 DNA polymerase III su 30.9 6.6E+02 0.014 27.4 11.5 84 420-506 181-278 (709)
469 KOG0376 Serine-threonine phosp 30.7 93 0.002 31.3 5.0 102 411-518 12-115 (476)
470 PF03745 DUF309: Domain of unk 30.3 1.8E+02 0.004 19.9 6.2 49 483-531 9-62 (62)
471 PF04910 Tcf25: Transcriptiona 30.3 5.4E+02 0.012 25.3 22.7 233 152-396 6-291 (360)
472 cd07153 Fur_like Ferric uptake 30.2 1.3E+02 0.0029 23.5 5.2 36 242-277 14-49 (116)
473 COG2987 HutU Urocanate hydrata 30.2 4.7E+02 0.01 26.3 9.4 168 152-363 215-432 (561)
474 PF11817 Foie-gras_1: Foie gra 29.3 1.5E+02 0.0034 27.2 6.2 22 198-219 183-204 (247)
475 PRK12798 chemotaxis protein; R 29.3 5.9E+02 0.013 25.5 22.8 27 440-466 259-285 (421)
476 KOG2582 COP9 signalosome, subu 28.8 5.6E+02 0.012 25.1 16.0 265 105-398 38-346 (422)
477 PRK12798 chemotaxis protein; R 28.7 6.1E+02 0.013 25.4 22.2 195 346-547 125-334 (421)
478 PRK09462 fur ferric uptake reg 28.6 3.4E+02 0.0074 22.5 7.8 34 314-347 33-66 (148)
479 KOG0991 Replication factor C, 28.4 4.6E+02 0.01 24.0 13.1 105 374-482 165-281 (333)
480 PF01475 FUR: Ferric uptake re 28.3 97 0.0021 24.6 4.1 45 233-277 12-56 (120)
481 PRK13341 recombination factor 28.3 8.3E+02 0.018 26.9 19.3 143 135-280 192-350 (725)
482 PF11768 DUF3312: Protein of u 28.2 7E+02 0.015 26.0 10.7 22 338-359 413-434 (545)
483 PRK11639 zinc uptake transcrip 27.9 3.3E+02 0.0071 23.3 7.5 36 312-347 39-74 (169)
484 PF09454 Vps23_core: Vps23 cor 27.8 1.5E+02 0.0032 20.7 4.3 48 193-241 8-55 (65)
485 PRK14963 DNA polymerase III su 27.6 7.2E+02 0.016 25.9 12.7 17 242-258 255-271 (504)
486 PF06957 COPI_C: Coatomer (COP 27.5 3.1E+02 0.0067 27.6 8.0 19 413-431 214-232 (422)
487 PF12926 MOZART2: Mitotic-spin 27.4 2.6E+02 0.0057 20.8 8.1 41 459-499 29-69 (88)
488 KOG4642 Chaperone-dependent E3 27.4 4.9E+02 0.011 23.9 11.0 118 377-498 19-142 (284)
489 PF10155 DUF2363: Uncharacteri 27.3 3.4E+02 0.0073 22.0 12.6 46 118-170 3-48 (126)
490 PF11768 DUF3312: Protein of u 27.3 7.3E+02 0.016 25.9 11.3 61 196-256 411-472 (545)
491 COG4259 Uncharacterized protei 27.0 2.9E+02 0.0064 21.2 6.6 57 493-551 57-113 (121)
492 PF11838 ERAP1_C: ERAP1-like C 26.8 5.6E+02 0.012 24.4 19.5 146 384-535 146-302 (324)
493 PF11123 DNA_Packaging_2: DNA 26.5 1.8E+02 0.004 20.7 4.4 19 189-207 27-45 (82)
494 PRK14951 DNA polymerase III su 26.4 8.3E+02 0.018 26.2 11.4 84 420-506 186-283 (618)
495 KOG1308 Hsp70-interacting prot 26.1 44 0.00096 31.9 1.9 68 191-259 146-213 (377)
496 PRK07003 DNA polymerase III su 24.9 9.8E+02 0.021 26.5 15.4 46 349-396 180-226 (830)
497 PF04090 RNA_pol_I_TF: RNA pol 24.8 4E+02 0.0086 23.6 7.3 63 194-256 42-104 (199)
498 PF00244 14-3-3: 14-3-3 protei 24.6 5.4E+02 0.012 23.5 11.0 36 200-235 8-43 (236)
499 KOG1308 Hsp70-interacting prot 24.5 54 0.0012 31.4 2.1 119 414-537 125-244 (377)
500 PF12926 MOZART2: Mitotic-spin 24.5 3E+02 0.0066 20.5 8.2 63 470-534 7-69 (88)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-61 Score=516.91 Aligned_cols=419 Identities=20% Similarity=0.322 Sum_probs=384.0
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHH
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFD 197 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (565)
+....|+++|+.+.. ++..+|..++.+|++.|+++.|..+++.|.+.| ..++..+|+
T Consensus 420 g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------------------l~pD~~tyn 476 (1060)
T PLN03218 420 RAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------------------LKADCKLYT 476 (1060)
T ss_pred CCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------------------CCCCHHHHH
Confidence 455666666665542 567777777777777777777777777777765 567899999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 278 IIERAVEVFKNMES--MGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRI 355 (565)
Q Consensus 278 ~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 355 (565)
++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999986 5889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 356 FSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV 435 (565)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (565)
|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 436 PNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELY 515 (565)
Q Consensus 436 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 515 (565)
||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHh----c-------------------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCCCc
Q 008454 516 SGLHH----C-------------------GKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEK 559 (565)
Q Consensus 516 ~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 559 (565)
..|.+ + +..++|..+|++|.+.|+.||..||..++.|+...+..
T Consensus 797 glc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~ 863 (1060)
T PLN03218 797 GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDA 863 (1060)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccH
Confidence 65432 1 12467999999999999999999999999777665543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-61 Score=515.59 Aligned_cols=416 Identities=19% Similarity=0.308 Sum_probs=398.9
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHH
Q 008454 117 QKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVF 196 (565)
Q Consensus 117 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (565)
.+++..|+++|++|......+++...+..++..+.+.|..++|..+++.|.. ++..+|
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----------------------pd~~Ty 440 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----------------------PTLSTF 440 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----------------------CCHHHH
Confidence 4678888999998888765666777778888888888888888888876643 478999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL 276 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 276 (565)
+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 277 GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEK--NGIQPNVITFNTLIFGFCKKGKLHEANR 354 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (565)
|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+++++|.. .|+.||..+|+.+|.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 6789999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 355 IFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL 434 (565)
Q Consensus 355 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (565)
+|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008454 435 VPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSEL 514 (565)
Q Consensus 435 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 514 (565)
.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcc
Q 008454 515 YSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAP 554 (565)
Q Consensus 515 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 554 (565)
+.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.3e-59 Score=495.87 Aligned_cols=414 Identities=17% Similarity=0.231 Sum_probs=369.2
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
..+++..|+++|+|+....++.++..+|..++.++++.++++.+..++..+.+.| ..++..+
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g------------------~~~~~~~ 160 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG------------------FEPDQYM 160 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC------------------CCcchHH
Confidence 4568999999999999877788999999999999999999999999999999987 4567888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
|+.|+..|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 99999999999999999999999875 78889999999999999999999999999888888999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 276 LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRI 355 (565)
Q Consensus 276 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 355 (565)
.|+.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+|+.+|.+|++.|++++|+++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999998889889999999999999999999999999988864 5888999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 356 FSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV 435 (565)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (565)
|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 9999888889999999999999999999999999999999999889999999999999999999999999988864
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHH
Q 008454 436 PNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE-KCMAPDSIILSEL 514 (565)
Q Consensus 436 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l 514 (565)
||..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 688889999999999999999999999999889999999999999999999999999999999875 5888999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCCCccCC
Q 008454 515 YSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEKESG 562 (565)
Q Consensus 515 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~ 562 (565)
+++|++.|+.++|.+++++| ++.|+..+|++++.+|...|+.+.|
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999998888765 6788999999999999888887754
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-55 Score=481.29 Aligned_cols=428 Identities=19% Similarity=0.249 Sum_probs=302.9
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcc--------
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYR-------- 187 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~-------- 187 (565)
..++...|+++|+.+.. ++..+|+.++.++++.|++++|..+|++|.+.| +.+....|..++..+.
T Consensus 133 ~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 133 RFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred hCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchhhH
Confidence 34577888888887753 467789999999999999999999999998875 4455566666665432
Q ss_pred ----------cCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 188 ----------MCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 188 ----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
...++..+|+.|+.+|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 2345777788888888888888888888888865 67778888888888888888888888888888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 008454 258 RISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFN 337 (565)
Q Consensus 258 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 337 (565)
|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n 358 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWT 358 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888775 35777788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 338 TLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEG 417 (565)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 417 (565)
.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.++..+|+.|+.+|++.|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 88888888888888888888888777788888888888888888888888888888887777777777777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------------------
Q 008454 418 KTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR------------------------------- 466 (565)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~------------------------------- 466 (565)
++++|.++|++|.+. |..+|+.+|.+|++.|+.++|+++|++|..
T Consensus 439 ~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 439 CIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred CHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 777777777766432 223333333333333333333333333321
Q ss_pred ---cCC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008454 467 ---SGC------------------------------RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSE 513 (565)
Q Consensus 467 ---~~~------------------------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 513 (565)
.|+ .+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 110 34455566666666666666666666666655555666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHhhHHHHHhhcccCCCccC
Q 008454 514 LYSGLHHCGKDELAMKLFRKME-IRGLLPKGFDKLRTINCAPENGEKES 561 (565)
Q Consensus 514 li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~ 561 (565)
++.+|++.|++++|.++|++|. +.|+.|+..+|..++.++.+.|+.++
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 6666666666666666666655 44555665556656655555555543
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.6e-55 Score=465.51 Aligned_cols=424 Identities=16% Similarity=0.221 Sum_probs=392.5
Q ss_pred CCChHHHHHHHHhhc--CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHH
Q 008454 103 HLTPFRVKHVLLKVQ--KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFD 180 (565)
Q Consensus 103 ~l~~~~~~~~l~~~~--~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~ 180 (565)
.++......++..+. ++...|.+++..+.+. ++.++..+|+.++..+++.|+++.|..+|++|.+.
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~----------- 187 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----------- 187 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCC-----------
Confidence 456666666665443 4788899999888875 57789999999999999999999999999988543
Q ss_pred HHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 008454 181 SILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS 260 (565)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~ 260 (565)
+..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|+.
T Consensus 188 -----------~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~ 256 (697)
T PLN03081 188 -----------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256 (697)
T ss_pred -----------CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC
Confidence 778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 261 PNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLI 340 (565)
Q Consensus 261 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 340 (565)
||..+|+.||.+|++.|++++|.++|++|.+ +|..+|++++.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999974 599999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 341 FGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTK 420 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (565)
.+|++.|++++|.+++..|.+.|+.+|..+|+.||.+|++.|++++|.++|++|.+ +|..+||.||.+|++.|+.+
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999964 68899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 421 KAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR-SGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (565)
+|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++|
T Consensus 409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999986 599999999999999999999999999998765
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHhhcccCCCccCC
Q 008454 500 LEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK-GFDKLRTINCAPENGEKESG 562 (565)
Q Consensus 500 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~ 562 (565)
++.|+..+|+.|+.+|...|+++.|.++++++. ++.|+ ..+|..+++.|++.|+.+.+
T Consensus 489 ---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 489 ---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred ---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 578999999999999999999999999999995 45564 67999999999999988754
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-54 Score=471.01 Aligned_cols=443 Identities=16% Similarity=0.249 Sum_probs=325.4
Q ss_pred CChHHHHHHHHhh--cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcC-----------
Q 008454 104 LTPFRVKHVLLKV--QKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSD----------- 170 (565)
Q Consensus 104 l~~~~~~~~l~~~--~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~----------- 170 (565)
++......++..+ .+....+.+++..+.+.. ..++...++.++..+++.|+++.|..+|++|.+.+
T Consensus 84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~ 162 (857)
T PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGY 162 (857)
T ss_pred CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHH
Confidence 3444444443332 235667777777766544 34566677777777777777777777777765421
Q ss_pred ----CCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHH
Q 008454 171 ----SFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDI 246 (565)
Q Consensus 171 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 246 (565)
....+..+|+.+.. ....|+..+|+.++++|++.+++..+.+++..|.+.|+.||+.+||.++.+|++.|++++
T Consensus 163 ~~~g~~~~A~~~f~~M~~--~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 240 (857)
T PLN03077 163 AKAGYFDEALCLYHRMLW--AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240 (857)
T ss_pred HhCCCHHHHHHHHHHHHH--cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH
Confidence 11111222222221 123445555555555555555555555555555555555555666777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008454 247 ALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEK 326 (565)
Q Consensus 247 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 326 (565)
|.++|++|. .||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+
T Consensus 241 A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 241 ARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred HHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 777777775 3577778888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008454 327 NGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTY 406 (565)
Q Consensus 327 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 406 (565)
.|+.||..+|+.++.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 8888888888888888888888888888888875 367778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008454 407 NALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN 486 (565)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 486 (565)
+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLN 468 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHC
Confidence 888888888888888888888888888888888888888888888888888888888763 4556677777777777
Q ss_pred CCHHHHHHHHHHHHHcCC--------------------------------------------------------------
Q 008454 487 EDFDRAAEVLLEMLEKCM-------------------------------------------------------------- 504 (565)
Q Consensus 487 g~~~~A~~~~~~~~~~~~-------------------------------------------------------------- 504 (565)
|+.++|..+|++|.. ++
T Consensus 469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 777777777766653 23
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCCCccCC
Q 008454 505 ---APDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEKESG 562 (565)
Q Consensus 505 ---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~ 562 (565)
.+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||..++.+|.+.|+.++|
T Consensus 548 ~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH
Confidence 3455678888899999999999999999999999999999999999999999988764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.5e-25 Score=248.06 Aligned_cols=431 Identities=15% Similarity=0.088 Sum_probs=349.5
Q ss_pred hhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCC------------------CCcH
Q 008454 115 KVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSF------------------DLPS 176 (565)
Q Consensus 115 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~------------------~~~~ 176 (565)
...++++.|+++++.+....+ .+...+..+..++...|++++|...++++++.... ..+.
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQP--DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCC--CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 345677777777776665433 45566777777777777777777777776654211 1112
Q ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 177 KLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
..+..++. ..+.+..++..+...+.+.|++++|...|+++.+.+.. +...+..++..+...|++++|..+++.+.+
T Consensus 520 ~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 520 QRFEKVLT---IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHH---hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22233322 24556778888899999999999999999998876643 677888889999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 008454 257 NRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITF 336 (565)
Q Consensus 257 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 336 (565)
.. +.+...|..+..++...|++++|...++++.+... .+...+..+...+.+.|++++|..+++++.+.. +.+..++
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 53 45778899999999999999999999999887643 367778888999999999999999999988764 3467888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 337 NTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKE 416 (565)
Q Consensus 337 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (565)
..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|...|+.+...+ |+..++..++.++.+.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHC
Confidence 999999999999999999999998875 5567788888899999999999999999998865 3447777889999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 417 GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVL 496 (565)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (565)
|++++|...++.+.+.... +...+..+...|...|+.++|.+.|+++++.. +.+..++..+...+...|+ .+|+.++
T Consensus 750 g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 9999999999999886543 78889999999999999999999999999875 6678889999999999999 8899999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCCCccCC
Q 008454 497 LEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEKESG 562 (565)
Q Consensus 497 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~ 562 (565)
+++.+.. +-+..++..+...+...|++++|.+.|+++.+.+.. +..++..+..++.+.|+.+++
T Consensus 827 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 827 EKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred HHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHH
Confidence 9998863 335667888889999999999999999999988754 888999999999999988765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.4e-24 Score=242.12 Aligned_cols=412 Identities=14% Similarity=0.061 Sum_probs=342.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHh---
Q 008454 109 VKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYS--- 185 (565)
Q Consensus 109 ~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~--- 185 (565)
....+....+++..|.+.|+.+....+ .+...+..++.++...|++++|...++++.+.+.. ....+..+...
T Consensus 470 ~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK--NLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHH
Confidence 344445566778888888877776543 45566777777777788888888887777665321 11111111111
Q ss_pred --------------cccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHH
Q 008454 186 --------------YRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFY 251 (565)
Q Consensus 186 --------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~ 251 (565)
....+.+...+..++..|.+.|++++|+++++.+.+... .+...|..+...+...|++++|...|
T Consensus 546 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred cCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122455667788899999999999999999999987653 37889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 008454 252 KEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP 331 (565)
Q Consensus 252 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 331 (565)
+.+.+.. +.+...+..+...+...|++++|..+++++.+... .+..++..++..+...|++++|.++++.+.+.+ +.
T Consensus 625 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 701 (899)
T TIGR02917 625 KKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PK 701 (899)
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 9998764 34677888999999999999999999999987643 368889999999999999999999999999876 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 332 NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALIL 411 (565)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 411 (565)
+...+..+...+.+.|++++|.+.|+.+...+ |+..++..++.++.+.|++++|.+.++.+.+... .+...+..+..
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~ 778 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAE 778 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 77888889999999999999999999998874 5557788899999999999999999999998754 47889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008454 412 GLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDR 491 (565)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 491 (565)
.|...|+.++|...|+++.+... .+...++.+...+...|+ .+|+.+++++.+.. +-+..++..+...+...|++++
T Consensus 779 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 779 LYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999998764 378899999999999999 88999999999864 4556778888899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 492 AAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
|..+++++++.+.. +..++..+..++++.|+.++|.+++++|.
T Consensus 856 A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 856 ALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999998654 88999999999999999999999999986
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=3.3e-21 Score=193.14 Aligned_cols=301 Identities=15% Similarity=0.119 Sum_probs=214.7
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 008454 237 SLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS---VTTYNTLISGHCNKGL 313 (565)
Q Consensus 237 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~ 313 (565)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566666777776666543 22445666666666677777777777776665432211 2445666777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHH
Q 008454 314 LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPN----VVTYNTLINGYGQVGNSEMGAS 389 (565)
Q Consensus 314 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 389 (565)
+++|..+++++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777776642 23566777777777777777777777777766532221 1234556667777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008454 390 LYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC 469 (565)
Q Consensus 390 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 469 (565)
.++++.+... .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|+..|++++|...++++.+.
T Consensus 202 ~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 8888876532 2456777788888888888888888888876543322456788888899999999999999998876
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHh
Q 008454 470 RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHH---CGKDELAMKLFRKMEIRGLLPKGF 544 (565)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 544 (565)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..++. .|+.+++..++++|.++++.|+..
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 466667788888899999999999999988875 5788888888877765 558889999999999888777765
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.1e-20 Score=189.32 Aligned_cols=303 Identities=15% Similarity=0.095 Sum_probs=255.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHc
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN---VYTLNMVMHAFCKL 276 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~ 276 (565)
...+...|++++|+..|+++.+.+.. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 44567889999999999999997643 677899999999999999999999999987532222 35678889999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHH
Q 008454 277 GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN----VITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A 352 (565)
|++++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998763 34678899999999999999999999999988754332 22456677888999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 353 NRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
.+.++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998764 34566788889999999999999999999998644333567889999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 008454 433 SLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ---NEDFDRAAEVLLEMLEKCMAPDSI 509 (565)
Q Consensus 433 ~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 509 (565)
.|+...+..++..+.+.|++++|..+++++++. .|+...+..++..+.. .|+.+++..++++|.+.++.|+..
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 456667788999999999999999999999986 6898899988888775 568999999999999887776665
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1.9e-18 Score=194.27 Aligned_cols=413 Identities=10% Similarity=0.028 Sum_probs=262.3
Q ss_pred HHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCC
Q 008454 111 HVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCD 190 (565)
Q Consensus 111 ~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (565)
.......+++..|+..|+.+.+..| .+.+.+..+..++.+.|++++|...|++.++...-......+..++...
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~---- 349 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN---- 349 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh----
Confidence 3445567899999999999998764 5788999999999999999999999999998643221111122111100
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM 270 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 270 (565)
.-.........+.+.|++++|++.|+++.+.... +...+..+...+...|++++|++.|++..+... .+...+..+.
T Consensus 350 -~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~ 426 (1157)
T PRK11447 350 -RYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLA 426 (1157)
T ss_pred -hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 0001122344566677777777777777765432 556666677777777777777777777765431 2333443333
Q ss_pred HH------------------------------------------HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008454 271 HA------------------------------------------FCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGH 308 (565)
Q Consensus 271 ~~------------------------------------------~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 308 (565)
.. +...|++++|++.|++..+.... +...+..+...|
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDL 505 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 33 33445555555555555544222 334444455555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---------HHHHHHHHHHH
Q 008454 309 CNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV---------VTYNTLINGYG 379 (565)
Q Consensus 309 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---------~~~~~li~~~~ 379 (565)
.+.|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++. ..+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 55555555555555554432 113333333333344455555555555544322111111 01122344556
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008454 380 QVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQ 459 (565)
Q Consensus 380 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 459 (565)
..|+.++|..+++. ...+...+..+...+.+.|++++|...|+++.+.... +...+..++..+...|++++|++
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 66777777766651 2345566778888899999999999999999887544 67788899999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 460 LYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMA--P---DSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 460 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p---~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
.++.+.+.. +.+..++..+..++...|++++|.+++++++..... | +...+..+...+...|++++|...|++.
T Consensus 659 ~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 659 QLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999887653 344566777788888999999999999998875322 2 2346667788888999999999999987
Q ss_pred HH-CCCCC
Q 008454 535 EI-RGLLP 541 (565)
Q Consensus 535 ~~-~g~~p 541 (565)
.. .|+.|
T Consensus 738 l~~~~~~~ 745 (1157)
T PRK11447 738 MVASGITP 745 (1157)
T ss_pred HhhcCCCC
Confidence 53 34543
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=2.5e-18 Score=193.24 Aligned_cols=436 Identities=11% Similarity=0.027 Sum_probs=299.6
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCC------------------CcHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFD------------------LPSK 177 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~------------------~~~~ 177 (565)
..+++..|++.++.+.+..| .+...+..+..++...|++++|...++++.+..... ....
T Consensus 159 ~~g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~ 236 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADYP--GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVA 236 (1157)
T ss_pred CCccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHH
Confidence 45789999999999988765 467788889999999999999999999987643110 1111
Q ss_pred HHHHHHHhcccCC----------------CChH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 008454 178 LFDSILYSYRMCD----------------SSPL-VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD 240 (565)
Q Consensus 178 ~~~~~~~~~~~~~----------------~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 240 (565)
.+...+..++... .++. ........+...|++++|+..|++..+.... +...+..+...+.+
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~ 315 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQ 315 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 2222222222111 0111 1113355677889999999999999887643 78889999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 241 SERVDIALGFYKEMRRNRISP-NVYTL------------NMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISG 307 (565)
Q Consensus 241 ~~~~~~A~~~~~~m~~~~~~p-~~~~~------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 307 (565)
.|++++|+..|++..+..... +...+ ......+.+.|++++|++.|+++.+... .+...+..+...
T Consensus 316 ~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~ 394 (1157)
T PRK11447 316 QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDV 394 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 999999999999988754321 11112 1223456788999999999999988743 256777788899
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH------------------------------------------HHHHHH
Q 008454 308 HCNKGLLSLAMKFKNLMEKNGIQPNVITFNTL------------------------------------------IFGFCK 345 (565)
Q Consensus 308 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l------------------------------------------i~~~~~ 345 (565)
+...|++++|++.+++..+... .+...+..+ ...+..
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999999887532 123333222 234456
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 346 KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYL 425 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 425 (565)
.|++++|++.+++..+.. +-+...+..+...|.+.|++++|...++++.+.... +...+..+...+...++.++|...
T Consensus 474 ~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 788888888888887764 335566777888888889999999998888765332 333333333333344444444443
Q ss_pred HHHHHhC---------------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 426 VKDLDKN---------------------------------------SLVPNASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 426 ~~~~~~~---------------------------------------~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
++.+... ....+...+..+...+.+.|++++|++.|+++++
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3322110 0123445566777888889999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C---
Q 008454 467 SGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLL--P--- 541 (565)
Q Consensus 467 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--- 541 (565)
.. +.+...+..++..+...|++++|.+.++.+.+.. +.+..++..+..++...|++++|.++++++....-. |
T Consensus 632 ~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 709 (1157)
T PRK11447 632 RE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSME 709 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchh
Confidence 74 5567888889999999999999999999887642 234556777788888999999999999998765321 2
Q ss_pred CHhhHHHHHhhcccCCCcc
Q 008454 542 KGFDKLRTINCAPENGEKE 560 (565)
Q Consensus 542 ~~~~~~~ll~~~~~~g~~~ 560 (565)
+...+..+.+.+...|+.+
T Consensus 710 ~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 710 SALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred hHHHHHHHHHHHHHcCCHH
Confidence 2234444455555555544
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=4.5e-18 Score=179.52 Aligned_cols=370 Identities=13% Similarity=0.021 Sum_probs=282.6
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 142 THSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRD 221 (565)
Q Consensus 142 ~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 221 (565)
.+......+.+.|+++.|...+++.++.. +++..|..+..+|.+.|++++|++.++...+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------------------p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~ 188 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--------------------PDPVYYSNRAACHNALGDWEKVVEDTTAALE 188 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------CchHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566777788899999999998887752 2466788888889999999999999999888
Q ss_pred CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC----------------------------C-CC---HHHHHHH
Q 008454 222 YGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI----------------------------S-PN---VYTLNMV 269 (565)
Q Consensus 222 ~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~----------------------------~-p~---~~~~~~l 269 (565)
.+.. +..+|..+..++...|++++|+..|......+. . .+ .......
T Consensus 189 l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 267 (615)
T TIGR00990 189 LDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNY 267 (615)
T ss_pred cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 6533 677888888999999999888766544322110 0 00 0000000
Q ss_pred ---------------------------HHHH------HHcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCh
Q 008454 270 ---------------------------MHAF------CKLGIIERAVEVFKNMESMG-FIP-SVTTYNTLISGHCNKGLL 314 (565)
Q Consensus 270 ---------------------------i~~~------~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~ 314 (565)
+... ...+++++|.+.|+...+.+ ..| ....|..+...+...|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 0000 12357889999999998764 223 456778888889999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 315 SLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEM 394 (565)
Q Consensus 315 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 394 (565)
++|+..+++..+.. +-+...|..+...+...|++++|+..|+++.+.. +.+...|..+...+...|++++|...|++.
T Consensus 348 ~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 425 (615)
T TIGR00990 348 LEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKS 425 (615)
T ss_pred HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998763 2246688888899999999999999999998764 456788999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-
Q 008454 395 LRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK- 473 (565)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~- 473 (565)
.+.... +...+..+...+.+.|++++|+..|++..+.... +...|+.+...+...|++++|++.|++.++..-..+.
T Consensus 426 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~ 503 (615)
T TIGR00990 426 IDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM 503 (615)
T ss_pred HHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc
Confidence 987543 6778888999999999999999999999876432 5778999999999999999999999999876311111
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 474 -----HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 474 -----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
..++..+..+...|++++|.+++++.++... .+...+..+...+.+.|++++|.+.|++..+.
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1122222234456999999999999988642 34457888999999999999999999998655
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=3.8e-18 Score=179.49 Aligned_cols=333 Identities=11% Similarity=0.004 Sum_probs=276.9
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
...++..+.+.|++++|..+++..+.. .+.++.....++.+....|++++|++.|+++.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~-------------------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~ 105 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLT-------------------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV 105 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHh-------------------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh
Confidence 455667778899999999999999887 4566777888888888999999999999999987
Q ss_pred CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008454 223 GFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYN 302 (565)
Q Consensus 223 ~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 302 (565)
... +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+...... +...+.
T Consensus 106 ~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~ 182 (656)
T PRK15174 106 NVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIA 182 (656)
T ss_pred CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHH
Confidence 644 67889999999999999999999999998753 345778888999999999999999999988766433 333343
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008454 303 TLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVG 382 (565)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 382 (565)
.+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|+..++++.+.. +.+...+..+...+...|
T Consensus 183 ~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G 260 (656)
T PRK15174 183 TC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSG 260 (656)
T ss_pred HH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 33 3478899999999999998876433445555666788999999999999999998875 456778888999999999
Q ss_pred ChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 383 NSEM----GASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 383 ~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
++++ |...|++..+.... +...+..+...+.+.|++++|...++++.+.... +...+..+...+...|++++|+
T Consensus 261 ~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 261 RSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAAS 338 (656)
T ss_pred CchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 9986 89999999987543 6788999999999999999999999999987544 5667888899999999999999
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 459 QLYKSMIRSGCRPNK-HIFEMLMSTFCQNEDFDRAAEVLLEMLEKC 503 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 503 (565)
..++.+.+. .|+. ..+..+..++...|+.++|...|+++.+..
T Consensus 339 ~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 339 DEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999986 3544 334445678899999999999999998763
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=4e-18 Score=179.33 Aligned_cols=336 Identities=11% Similarity=0.023 Sum_probs=276.1
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
+..-...++..+.+.|++++|+.+++........ +...+..++.+....|++++|...|+++.+.. +.+...+..+..
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~ 118 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVAS 118 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3344556778889999999999999999987755 56667777788888999999999999998864 335678888899
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 272 AFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 351 (565)
.+...|++++|...++++.+... .+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHH
Confidence 99999999999999999988632 25778888999999999999999999988766433 33344333 34788999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHH
Q 008454 352 ANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKK----AAYLVK 427 (565)
Q Consensus 352 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~ 427 (565)
|...++.+.+....++...+..+..++...|++++|...++++.+.+.. +...+..+...+...|++++ |...++
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999999877643344555566678889999999999999999987543 67888889999999999986 899999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008454 428 DLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPD 507 (565)
Q Consensus 428 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 507 (565)
.+.+.... +...+..+...+...|++++|+..++++++.. +.+...+..+..++.+.|++++|...++++.+. .|+
T Consensus 275 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~ 350 (656)
T PRK15174 275 HALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGV 350 (656)
T ss_pred HHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc
Confidence 99886543 67789999999999999999999999999874 445677888899999999999999999999886 344
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 508 S-IILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 508 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
. ..+..+..++...|+.++|...|++..+.
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3 33444567889999999999999998766
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=6.8e-19 Score=168.72 Aligned_cols=389 Identities=15% Similarity=0.111 Sum_probs=321.9
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHH
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFD 197 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (565)
.+.+.....-..+++.. +...++|..+.+++-..|++++|..+++.+++. .+.....|.
T Consensus 96 ~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel-------------------~p~fida~i 154 (966)
T KOG4626|consen 96 SRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIEL-------------------KPKFIDAYI 154 (966)
T ss_pred cchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc-------------------CchhhHHHh
Confidence 34554444444455443 357899999999999999999999999999987 455678899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESC-NKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL 276 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 276 (565)
.+..++...|+.+.|.+.|.+..+.+ |+.... ..+...+-..|+..+|..-|.+.++... --...|..|...+-.+
T Consensus 155 nla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~ 231 (966)
T KOG4626|consen 155 NLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQ 231 (966)
T ss_pred hHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhc
Confidence 99999999999999999999999865 654443 3455556668999999999998877532 2356788899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 277 GIIERAVEVFKNMESMGFIPS-VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRI 355 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 355 (565)
|+.-.|+.-|++..+.. |+ ...|-.|...|...+.+++|...+.+..... +-..+++..+...|...|.+|-|+..
T Consensus 232 Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~ 308 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDT 308 (966)
T ss_pred chHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHH
Confidence 99999999999998763 44 6778889999999999999999999887763 22577888888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 356 FSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV 435 (565)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (565)
+++..+.. +-=...|+.|..++-..|++.+|.+.|++....... .....+.|...|...|.+++|..+|....+- .
T Consensus 309 Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~ 384 (966)
T KOG4626|consen 309 YKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--F 384 (966)
T ss_pred HHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--C
Confidence 99998863 223578999999999999999999999999987433 5677888999999999999999999998874 3
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 008454 436 PN-ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDS-IILS 512 (565)
Q Consensus 436 p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~ 512 (565)
|. ...++.|...|-+.|++++|+..|++.++- .|+ ...|+.+...|-..|+.+.|.+.+.+++.. .|.. ...+
T Consensus 385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhs 460 (966)
T KOG4626|consen 385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHS 460 (966)
T ss_pred hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHh
Confidence 43 346889999999999999999999999974 666 578999999999999999999999999874 4443 5788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008454 513 ELYSGLHHCGKDELAMKLFRKMEIRGLLPKG 543 (565)
Q Consensus 513 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 543 (565)
.|...|-..|+..+|.+-|++..+. +||.
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLkl--kPDf 489 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKL--KPDF 489 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHcc--CCCC
Confidence 8999999999999999999998654 5553
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1.8e-17 Score=175.02 Aligned_cols=365 Identities=11% Similarity=-0.042 Sum_probs=285.4
Q ss_pred HHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCC
Q 008454 111 HVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCD 190 (565)
Q Consensus 111 ~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (565)
+......+++..|++.|+.+....| +...|..+..++.+.|++++|...++..++. .+
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l-------------------~p 191 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNALGDWEKVVEDTTAALEL-------------------DP 191 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------------------CC
Confidence 3445667899999999999998664 5678999999999999999999999999887 45
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH-----------------------------HHHHHHHH-----
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPII-----------------------------ESCNKFLS----- 236 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----------------------------~~~~~ll~----- 236 (565)
.+..++..+..+|...|++++|+.-|..+...+...+. ..+..+..
T Consensus 192 ~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (615)
T TIGR00990 192 DYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSF 271 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 57788889999999999999998766544322110000 00000000
Q ss_pred -------------------------HH------HcCCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHH
Q 008454 237 -------------------------SL------LDSERVDIALGFYKEMRRNR-ISP-NVYTLNMVMHAFCKLGIIERAV 283 (565)
Q Consensus 237 -------------------------~~------~~~~~~~~A~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~a~ 283 (565)
.. ...+++++|.+.|+...+.+ ..| ....|+.+...+...|++++|+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~ 351 (615)
T TIGR00990 272 RPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEAL 351 (615)
T ss_pred cCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 00 11257889999999988764 223 4567888888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008454 284 EVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN 363 (565)
Q Consensus 284 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 363 (565)
..+++..+.... ....|..+...+...|++++|...+++..+.. +.+..+|..+...+...|++++|+..|++..+..
T Consensus 352 ~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 352 ADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999876322 46688888999999999999999999998864 3367889999999999999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH----
Q 008454 364 VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNAS---- 439 (565)
Q Consensus 364 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---- 439 (565)
+.+...+..+...+.+.|++++|+..|++..+... .+...++.+...+...|++++|...|+...+.....+..
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~ 507 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence 44667788888999999999999999999987633 367889999999999999999999999988754321111
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 440 --TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 440 --~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
.++.....+...|++++|.+++++.++.. +.+...+..+...+...|++++|...|++..+.
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 12222333445699999999999998864 344567889999999999999999999999775
No 18
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=2.5e-16 Score=166.13 Aligned_cols=409 Identities=10% Similarity=0.018 Sum_probs=293.7
Q ss_pred cCCChHHHHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHH
Q 008454 102 THLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDS 181 (565)
Q Consensus 102 ~~l~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~ 181 (565)
..++......++....+++..|++.|+.+.+..|..+ ...+ .++.++...|+.++|+..++++...
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~~p------------ 97 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQSS------------ 97 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhccC------------
Confidence 3556677888888999999999999999998776321 2233 7788888999999999999998843
Q ss_pred HHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 008454 182 ILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISP 261 (565)
Q Consensus 182 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 261 (565)
.+........+...|...|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+... .|
T Consensus 98 -------~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp 167 (822)
T PRK14574 98 -------MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DP 167 (822)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--Cc
Confidence 1223344444567888899999999999999998755 5777778888899999999999999998765 45
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH-------------------
Q 008454 262 NVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKN------------------- 322 (565)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~------------------- 322 (565)
+...+..++..+...++..+|++.++++.+.... +...+..++.++.+.|-...|+++..
T Consensus 168 ~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~ 246 (822)
T PRK14574 168 TVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAA 246 (822)
T ss_pred chHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHH
Confidence 5555655555554566676799999999887532 56666667777766665554444332
Q ss_pred -----------------------------HHHH-CCCCCCH-H----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008454 323 -----------------------------LMEK-NGIQPNV-I----TFNTLIFGFCKKGKLHEANRIFSEMKATNVSPN 367 (565)
Q Consensus 323 -----------------------------~m~~-~g~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 367 (565)
.+.. .+..|.. . +..-.+-++...|++.++++.|+.+...+.+..
T Consensus 247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P 326 (822)
T PRK14574 247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP 326 (822)
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC
Confidence 2221 0111211 1 112334566777888888888888888776656
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--------
Q 008454 368 VVTYNTLINGYGQVGNSEMGASLYEEMLRNG-----IKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL-------- 434 (565)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------- 434 (565)
..+-..+.++|...+.+++|..++..+.... ..++......|..+|...+++++|..+++.+.+...
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 6677788888888888888888888886643 123444457788888888888888888888876322
Q ss_pred -----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008454 435 -----VPNAS-TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDS 508 (565)
Q Consensus 435 -----~p~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (565)
.||-. .+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|.+.++.+... -+-+.
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~ 484 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSL 484 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccH
Confidence 12222 34455677778888888888888887764 667888888888888888888888888666554 23345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 509 IILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 509 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.+....+..+...|++++|..+.+.+.+.
T Consensus 485 ~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 485 ILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 56677777888888888888888777544
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=2.8e-18 Score=164.58 Aligned_cols=411 Identities=14% Similarity=0.112 Sum_probs=325.3
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
..+|++.|.+....+-..++- +.+..-.+..++....+.+....--....+. .+--..+
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-------------------~~q~ae~ 118 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-------------------NPQGAEA 118 (966)
T ss_pred hccCHHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhc-------------------cchHHHH
Confidence 445888888887777666542 3333334444444444444433322222222 3335678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLN-MVMHAFC 274 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~ 274 (565)
|..+...+-..|++++|+..++.+.+.... .+..|..+..++...|+.+.|.+.|.+.++. .|+..... .+...+-
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHH
Confidence 999999999999999999999999997644 6899999999999999999999999998875 46555443 3444455
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 275 KLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANR 354 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (565)
..|++++|...|.+.++.... -...|..|...+-.+|+...|+..|++..+... --..+|-.|.+.|...+.+++|..
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHH
Confidence 689999999999988875322 356788899999999999999999999988632 236789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 355 IFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL 434 (565)
Q Consensus 355 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (565)
.+.+..... +.....+..+...|...|.++.|+..|++.++.... =...|+.|..++-..|++.+|.+.+........
T Consensus 274 ~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 274 CYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 998887653 345577888888899999999999999999986432 367899999999999999999999999988644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 008454 435 VPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDS-IILS 512 (565)
Q Consensus 435 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~ 512 (565)
. .....+.|...|...|.+++|..+|....+- .|. ....+.|...|-+.|++++|...+++.++ +.|+. ..|+
T Consensus 352 ~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~ 426 (966)
T KOG4626|consen 352 N-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALS 426 (966)
T ss_pred c-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHH
Confidence 3 5668899999999999999999999999875 444 46788999999999999999999999988 56765 5899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHhhcccCCCccC
Q 008454 513 ELYSGLHHCGKDELAMKLFRKMEIRGLLPK-GFDKLRTINCAPENGEKES 561 (565)
Q Consensus 513 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~ 561 (565)
.+...|-..|+.+.|.+.+.+.+.. .|. ....+.+...+..+|..+.
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHH
Confidence 9999999999999999999988654 455 3466777777777777654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=5.6e-17 Score=174.41 Aligned_cols=413 Identities=11% Similarity=-0.002 Sum_probs=311.8
Q ss_pred cCCChHHHHHH--HHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHH
Q 008454 102 THLTPFRVKHV--LLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLF 179 (565)
Q Consensus 102 ~~l~~~~~~~~--l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~ 179 (565)
..+++..|..- +....++...|++.+..+.... +.....+..+..++...|++++|..++++.++.
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~---------- 78 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL---------- 78 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------
Confidence 35666666543 3466789999999998887633 346667899999999999999999999999887
Q ss_pred HHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 008454 180 DSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI 259 (565)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 259 (565)
.|.++..+..++..+...|++++|+..++++.+.... +.. +..+..++...|+.++|+..++++.+...
T Consensus 79 ---------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P 147 (765)
T PRK10049 79 ---------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAP 147 (765)
T ss_pred ---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4567778888999999999999999999999887543 566 88899999999999999999999988643
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCh---hHHHHHHHHHH
Q 008454 260 SPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSV------TTYNTLISGHC-----NKGLL---SLAMKFKNLME 325 (565)
Q Consensus 260 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~ 325 (565)
.+...+..+...+...|..++|++.++.... .|+. .....++.... ..+++ ++|+..++.+.
T Consensus 148 -~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 148 -QTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred -CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 3566667778888889999999999987664 2221 11122222222 12234 77888888887
Q ss_pred HC-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008454 326 KN-GIQPNVI-TF----NTLIFGFCKKGKLHEANRIFSEMKATNVS-PNVVTYNTLINGYGQVGNSEMGASLYEEMLRNG 398 (565)
Q Consensus 326 ~~-g~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 398 (565)
+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|..+|+++.+..
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 54 1223221 11 11134556779999999999999887522 322 22335778999999999999999988754
Q ss_pred CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 399 IKV---DILTYNALILGLCKEGKTKKAAYLVKDLDKNSL-----------VPN---ASTYSALITGQCVRKNSERAFQLY 461 (565)
Q Consensus 399 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~~~~~~A~~~~ 461 (565)
... .......+..++...|++++|..+++.+.+... .|+ ...+..+...+...|++++|++++
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 221 135566777788999999999999999987532 123 234566778888999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008454 462 KSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLP 541 (565)
Q Consensus 462 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 541 (565)
++++... +-+...+..+...+...|++++|++.++++++.. +.+...+..++..+...|++++|..+++++.+. .|
T Consensus 383 ~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~P 458 (765)
T PRK10049 383 RELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EP 458 (765)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CC
Confidence 9999874 6667888999999999999999999999998863 334567777777899999999999999999875 45
Q ss_pred CHhhH
Q 008454 542 KGFDK 546 (565)
Q Consensus 542 ~~~~~ 546 (565)
+....
T Consensus 459 d~~~~ 463 (765)
T PRK10049 459 QDPGV 463 (765)
T ss_pred CCHHH
Confidence 54433
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=2.1e-16 Score=170.01 Aligned_cols=396 Identities=13% Similarity=0.038 Sum_probs=296.0
Q ss_pred CCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 008454 137 SLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTF 216 (565)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 216 (565)
+.+..-..-.+.+....|+.++|.+++.++... .+.....+..+...+...|++++|.++|
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-------------------~~~~a~~~~~lA~~~~~~g~~~~A~~~~ 72 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-------------------MQLPARGYAAVAVAYRNLKQWQNSLTLW 72 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455666677788889999999999999988763 2345667889999999999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 217 CQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIP 296 (565)
Q Consensus 217 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 296 (565)
++..+.... +...+..+...+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+....
T Consensus 73 ~~al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~- 148 (765)
T PRK10049 73 QKALSLEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ- 148 (765)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 999886533 57778889999999999999999999998763 33556 888888999999999999999999987544
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhC
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV------ITFNTLIFGFC-----KKGKL---HEANRIFSEMKAT 362 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~ 362 (565)
+...+..+...+...|..+.|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+.
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 566667788888899999999998886654 2221 11122222222 22334 7788888888854
Q ss_pred -CCCCCHH-HHH----HHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 363 -NVSPNVV-TYN----TLINGYGQVGNSEMGASLYEEMLRNGIK-VDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV 435 (565)
Q Consensus 363 -~~~~~~~-~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (565)
...|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|...|+++.+....
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 1223221 111 1134456779999999999999987643 332 2333577899999999999999998765422
Q ss_pred C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 436 P---NASTYSALITGQCVRKNSERAFQLYKSMIRSG-----------CRPN---KHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 436 p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
. ....+..+..++...|++++|.++++.+.+.. -.|+ ...+..+...+...|+.++|++++++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 13456677778899999999999999998752 0123 23456677788999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHhhcccCCCccCC
Q 008454 499 MLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKG-FDKLRTINCAPENGEKESG 562 (565)
Q Consensus 499 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~~ 562 (565)
+... .+.+...+..+...+...|++++|++.+++..+.. |+. ..+......+...|+.+.+
T Consensus 385 al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 385 LAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHH
Confidence 9886 34467889999999999999999999999997764 653 4444455566666666543
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=1.6e-14 Score=155.72 Aligned_cols=177 Identities=11% Similarity=0.035 Sum_probs=107.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 378 YGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERA 457 (565)
Q Consensus 378 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 457 (565)
+...|++++|...|+++... .|+...+..+...+.+.|+.++|...++...+.+.. +...+..+.......|++++|
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHH
Confidence 34556666666666655443 223333445555566666666666666666554321 222222233333344777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 458 FQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
...+++.++. .|+...+..+..++.+.|++++|...+++.++.. +.+...++.+...+...|+.++|+..+++..+.
T Consensus 596 l~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 596 LNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777777765 4566777777777777777777777777777753 224556677777777777888887777777654
Q ss_pred CCCCCHhhHHHHHhhcccCCCccC
Q 008454 538 GLLPKGFDKLRTINCAPENGEKES 561 (565)
Q Consensus 538 g~~p~~~~~~~ll~~~~~~g~~~~ 561 (565)
. +-+...+..+..++...|+.+.
T Consensus 673 ~-P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 673 L-PDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3 1234556666667777776654
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=6.6e-14 Score=148.05 Aligned_cols=394 Identities=12% Similarity=0.018 Sum_probs=290.3
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 141 ETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSS-PLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
.+....+-+..+.|+++.|.+.|+++++.. +.+ +.++ .++..+...|+.++|+..+++.
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-------------------P~~~~av~-dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAG-------------------PLQSGQVD-DWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-------------------ccchhhHH-HHHHHHHHcCCcHHHHHHHHHh
Confidence 344444556779999999999999999873 333 2344 7888888999999999999999
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008454 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVT 299 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 299 (565)
.... .........+...+...|++++|+++|+++.+.... +...+..++..+...++.++|++.++++... .|+..
T Consensus 95 ~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~ 170 (822)
T PRK14574 95 QSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQ 170 (822)
T ss_pred ccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchH
Confidence 8321 113444444467888999999999999999987533 5677778888999999999999999999876 45666
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----------------------
Q 008454 300 TYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIF----------------------- 356 (565)
Q Consensus 300 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----------------------- 356 (565)
.+..++..+...++..+|++.++++.+... -+...+..++.++.+.|-...|.++.
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHH
Confidence 665555555556777679999999998742 25555555555555555443333332
Q ss_pred -------------------------HHHHhC-CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008454 357 -------------------------SEMKAT-NVSPNV-VTY----NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILT 405 (565)
Q Consensus 357 -------------------------~~m~~~-~~~~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 405 (565)
+.+... +..|.. ..| .-.+-++...|++.++++.|+.+...+......+
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 222221 111221 122 2335567788999999999999999887767789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSL-----VPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC----------- 469 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----------- 469 (565)
-.++.++|...++.++|..+++.+..... .++......|..++...+++++|..+++++.+...
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 99999999999999999999999866431 22444467899999999999999999999997411
Q ss_pred CCC--H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-Hhh
Q 008454 470 RPN--K-HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK-GFD 545 (565)
Q Consensus 470 ~p~--~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~ 545 (565)
.|| - ..+..++..+...|+..+|++.++++... -+-|......+.+.+...|.+.+|.+.++..... .|+ ..+
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~ 486 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLIL 486 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHH
Confidence 122 1 33455677788999999999999999876 4558889999999999999999999999777554 454 445
Q ss_pred HHHHHhhcccCCCccCC
Q 008454 546 KLRTINCAPENGEKESG 562 (565)
Q Consensus 546 ~~~ll~~~~~~g~~~~~ 562 (565)
......++...|+.+.+
T Consensus 487 ~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 487 ERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHHhhhhHHHH
Confidence 55566666666766544
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.2e-14 Score=147.20 Aligned_cols=448 Identities=14% Similarity=0.074 Sum_probs=280.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCc---------
Q 008454 106 PFRVKHVLLKVQKDYVLSLEFFTWVQTHKPS-SLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLP--------- 175 (565)
Q Consensus 106 ~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~--------- 175 (565)
+..-.+.+..-+++|..|+.+|+.+...+|. .+++ .-.+.+++.+.++.+.|...|..+++...-...
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 3444566778889999999999998887654 3333 345668889999999999999988887531111
Q ss_pred ---------HHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHcCCCh
Q 008454 176 ---------SKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL--PIIESCNKFLSSLLDSERV 244 (565)
Q Consensus 176 ---------~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~ 244 (565)
...+..+.+.|...+.+|.+.+.|...|.-.|++..+..+...+...... .-.++|..+.+++-..|++
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ 323 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF 323 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH
Confidence 12223333446778889999999999999999999999999988775422 1346688899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHH
Q 008454 245 DIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG----LLSLAMKF 320 (565)
Q Consensus 245 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~~~ 320 (565)
++|...|.+..+....--+..+.-+...+.+.|+++.+...|+.+.+... -+..+...|...|...+ ..+.|..+
T Consensus 324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~ 402 (1018)
T KOG2002|consen 324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNV 402 (1018)
T ss_pred HHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence 99999998877653211134456778889999999999999999887532 24555555655565553 34455555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 321 KNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMK----ATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 321 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
+....+.- +.|...|-.+...+....-+.. +.+|.... ..+..+.....|.+...+...|++++|...|+....
T Consensus 403 l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 403 LGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 54444432 2345555444444443322222 44333322 223334455555555555555555555555555443
Q ss_pred C---CCCCCH------HH-HH--------------------------HHHHHHHHc-------CCHHHHHHHHHHHHhCC
Q 008454 397 N---GIKVDI------LT-YN--------------------------ALILGLCKE-------GKTKKAAYLVKDLDKNS 433 (565)
Q Consensus 397 ~---~~~~~~------~~-~~--------------------------~li~~~~~~-------g~~~~A~~~~~~~~~~~ 433 (565)
. ...+|. .+ || ..|.+|.+. +...+|...++.+...+
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 3 111111 01 11 112222222 33444544444433211
Q ss_pred -CC----------------------------------CCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHH
Q 008454 434 -LV----------------------------------PNASTYSALITGQCV------------RKNSERAFQLYKSMIR 466 (565)
Q Consensus 434 -~~----------------------------------p~~~~~~~li~~~~~------------~~~~~~A~~~~~~m~~ 466 (565)
.. +|..+.-.|.+.|.. .+..++|+++|.+.++
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 11 122222233333321 2346778888888887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhh
Q 008454 467 SGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR-GLLPKGFD 545 (565)
Q Consensus 467 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~ 545 (565)
.. +-|...-+.+...++..|++.+|..+|.+..+... -...+|-.+.++|..+|++-.|.++|+...++ +-.-+...
T Consensus 641 ~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 641 ND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred cC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 64 56677777788888888889999999888877632 24567778888888889999999988887655 33345566
Q ss_pred HHHHHhhcccCCCcc
Q 008454 546 KLRTINCAPENGEKE 560 (565)
Q Consensus 546 ~~~ll~~~~~~g~~~ 560 (565)
+..+.++.-+.|...
T Consensus 719 l~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQ 733 (1018)
T ss_pred HHHHHHHHHHhhhHH
Confidence 666667766666543
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.1e-13 Score=127.82 Aligned_cols=413 Identities=13% Similarity=0.149 Sum_probs=279.4
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCch---hHHHHHHHHhhcCCCCC----cHHHHHHHHHhcccCC
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFK---SSESILRGILDSDSFDL----PSKLFDSILYSYRMCD 190 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~a~~ll~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 190 (565)
+..+.+.-+++.+...+ .+.+.+.-..++...+..+.-+ .-++.|-.|.+.|.-.. .-.+.+-+ +...|
T Consensus 129 ~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~---~E~~P 204 (625)
T KOG4422|consen 129 REVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLL---FETLP 204 (625)
T ss_pred cccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHH---HhhcC
Confidence 45566666777766533 4556655555555444332221 12333434433332111 01122211 12256
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM 270 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 270 (565)
.++.++..+|.++|+--..+.|.+++++......+.+..++|.+|.+-.-. ...+++.+|....+.||..|+|.++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 688899999999999999999999999998887778889999888765432 2378888998888999999999999
Q ss_pred HHHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHH----CCCC----CCHHHHH
Q 008454 271 HAFCKLGIIER----AVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSL-AMKFKNLMEK----NGIQ----PNVITFN 337 (565)
Q Consensus 271 ~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~g~~----~~~~~~~ 337 (565)
.+..+.|+++. |.+++.+|++.|++|...+|..+|..+++.++..+ +..++.++.. ..++ .+...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999998765 56778888999999999999999999999888755 3334444332 1122 2455667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 338 TLIFGFCKKGKLHEANRIFSEMKATN----VSPN---VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALI 410 (565)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 410 (565)
..|..|.+..+.+-|.++-.-+.... +.++ ..-|..+....|+....+.....|+.|+-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 77888888888888888776654321 2233 2335667778888888999999999999887888888888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C--------HHH-----HHHH-------HHHHHHcCC
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRK-N--------SER-----AFQL-------YKSMIRSGC 469 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~--------~~~-----A~~~-------~~~m~~~~~ 469 (565)
.+..-.|.++-.-+++.++...|..-+...-..++..+++.+ + +.. |..+ -.+|.+.
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~-- 518 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ-- 518 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--
Confidence 988888998888888888887765444444444444444433 1 111 1111 1122222
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008454 470 RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCM----APDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLL 540 (565)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 540 (565)
.......+.+...+.+.|..++|.+++..+.+.+- .|.......+++.-...+....|..+++-|...+..
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 34455667777778899999999999988866542 233334446667777788899999999988776543
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=4.8e-13 Score=144.48 Aligned_cols=217 Identities=14% Similarity=0.063 Sum_probs=167.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 313 LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYE 392 (565)
Q Consensus 313 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 392 (565)
+.++|...+.+.... .|+......+...+...|++++|...++++... +|+...+..+...+.+.|+.++|...++
T Consensus 491 ~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 491 LPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred CcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 333444434433332 233333233344456789999999999887654 4555556677788899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008454 393 EMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPN 472 (565)
Q Consensus 393 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 472 (565)
+..+.+.. +...+..+...+...|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++.++.. +.+
T Consensus 567 qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~ 642 (987)
T PRK09782 567 QAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNN 642 (987)
T ss_pred HHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 99987522 3334444444555669999999999999876 4678889999999999999999999999999875 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008454 473 KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 538 (565)
...+..+..++...|++++|+..+++.++.. +-+...+..+..++...|++++|...+++..+..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 7788888889999999999999999999863 3467788999999999999999999999997653
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=2.4e-13 Score=125.62 Aligned_cols=367 Identities=14% Similarity=0.154 Sum_probs=270.6
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (565)
-+.++|..+|..+++--..+.|.+++++..... ..-+..+||.+|.+-.- ....++..
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------------------~kv~~~aFN~lI~~~S~----~~~K~Lv~ 262 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAK------------------GKVYREAFNGLIGASSY----SVGKKLVA 262 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------------------heeeHHhhhhhhhHHHh----hccHHHHH
Confidence 477899999999999999999999999887652 22356778888876543 33378899
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHh-
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSERVDI----ALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIER-AVEVFKNMES- 291 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~- 291 (565)
+|......||..++|+++++..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ +..++.++..
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 99999999999999999999999998765 67888999999999999999999999999988754 4444444443
Q ss_pred ---CCCC---C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 292 ---MGFI---P-SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNG----IQPN---VITFNTLIFGFCKKGKLHEANRIFS 357 (565)
Q Consensus 292 ---~g~~---p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~ 357 (565)
..++ | |...|...+..|.+..+.+.|.++...+.... +.|+ ..-|..+....|.....+..+..|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2 45567778899999999999999877665431 2233 2346677888899999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-C--------HH-----HHH
Q 008454 358 EMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEG-K--------TK-----KAA 423 (565)
Q Consensus 358 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~--------~~-----~A~ 423 (565)
.|.-.-+-|+..+...++++....|.++-.-+++.+++..|..........++..+++.. . +. -|.
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 999887889999999999999999999999999999998876655555555555565544 1 11 112
Q ss_pred HHHH-------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 424 YLVK-------DLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSG----CRPNKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 424 ~~~~-------~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~~~~A 492 (565)
.+++ ++.+. .......+.+.-.+.+.|+.++|.+++..+.+++ ..|......-+++.-.+.++...|
T Consensus 503 d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 2222 22222 2345567777778889999999999999997654 234445555777777888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 493 AEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAM 528 (565)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 528 (565)
..+++-|...+...-...-+-+...|.-...-.+|+
T Consensus 581 ~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~l 616 (625)
T KOG4422|consen 581 IEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEAL 616 (625)
T ss_pred HHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHH
Confidence 999999977654432323444444444333333333
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1e-14 Score=135.36 Aligned_cols=419 Identities=13% Similarity=0.074 Sum_probs=271.4
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHH
Q 008454 120 YVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLL 199 (565)
Q Consensus 120 ~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (565)
+..|+..++-+.+++-|+.....--.+.+++.+.+.|..|..+++-.+..- ..... .....+.+.+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqv-psink-------------~~rikil~ni 282 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQV-PSINK-------------DMRIKILNNI 282 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhc-cccch-------------hhHHHHHhhc
Confidence 346666666666666555443333445666677777888887777666551 00000 0012345556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC------------CCHHHHH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS------------PNVYTLN 267 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~------------p~~~~~~ 267 (565)
.-.+.+.|++++|+..|+...+.. |+..+-..|+-++..-|+.++..+.|..|+..-.. |+....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 667788888999998888887755 66655445555555678888888888888653221 2222222
Q ss_pred H-----HHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHH-------------HH--------HHHHHHHHhcCChhHHHH
Q 008454 268 M-----VMHAFCKLGI--IERAVEVFKNMESMGFIPSVT-------------TY--------NTLISGHCNKGLLSLAMK 319 (565)
Q Consensus 268 ~-----li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~-------------~~--------~~li~~~~~~g~~~~a~~ 319 (565)
. .++.+-+.++ .++++-.-.+++.--+.|+-. .+ ..-...+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 2 2222222221 122221111221111111100 00 111245777788888877
Q ss_pred HHHHHHHCCCCCCHHHHHH------------------------------------HHHHHHHcCCHHHHHHHHHHHHhCC
Q 008454 320 FKNLMEKNGIQPNVITFNT------------------------------------LIFGFCKKGKLHEANRIFSEMKATN 363 (565)
Q Consensus 320 ~~~~m~~~g~~~~~~~~~~------------------------------------li~~~~~~g~~~~A~~~~~~m~~~~ 363 (565)
++.-+.+..-+.-...-+. -.+....+|++++|.+.+++.....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 7776654422111111111 1112234678889998888887654
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008454 364 VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSA 443 (565)
Q Consensus 364 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 443 (565)
-.-....|+ +.-.+-..|+.++|++.|-++... ..-+..+...+...|-...+..+|++++-+.... +.-|+.....
T Consensus 521 asc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 521 ASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred hHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 222233333 334456788999999988877654 2236778888888999999999999998877654 3337788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcC
Q 008454 444 LITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGL-HHCG 522 (565)
Q Consensus 444 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g 522 (565)
|...|-+.|+-..|++.+-+--+. ++-+..+...|..-|....-+++++.+|++..- +.|+..-|..++..| .+.|
T Consensus 598 l~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence 999999999999999887766554 577889999999999999999999999998754 689999999888655 5689
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCCCccC
Q 008454 523 KDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEKES 561 (565)
Q Consensus 523 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 561 (565)
+++.|+++|+.... .+.-|..++.-+++.|...|.++-
T Consensus 675 nyqka~d~yk~~hr-kfpedldclkflvri~~dlgl~d~ 712 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLKDA 712 (840)
T ss_pred cHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccchhH
Confidence 99999999999864 467788899999999999998764
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=7.2e-13 Score=134.54 Aligned_cols=435 Identities=16% Similarity=0.100 Sum_probs=287.3
Q ss_pred ChHHHHHHH--HhhcCChHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCC----------
Q 008454 105 TPFRVKHVL--LKVQKDYVLSLEFFTWVQTHKPSS-LTLETHSIVLHILTKNRKFKSSESILRGILDSDS---------- 171 (565)
Q Consensus 105 ~~~~~~~~l--~~~~~~~~~al~~f~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~---------- 171 (565)
+|....++. ....++|..+..+..-+....-.. .-.+.|..+...+...|+++.|...+.+..+...
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 344444333 467889999999988887754222 2357899999999999999999999988876531
Q ss_pred ---------CCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008454 172 ---------FDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRK----KFRNATDTFCQMRDYGFLPIIESCNKFLSSL 238 (565)
Q Consensus 172 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 238 (565)
...+...|+.++.. .+.+..+...|...|+..+ ..+.|..++.+..+..+. |...|-.+...+
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~---~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~ 424 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQ---LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLL 424 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHh---CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHH
Confidence 11123333333332 3445555555555555553 445555555555554422 566666665555
Q ss_pred HcCCChHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHH
Q 008454 239 LDSERVDIALGFYKEMR----RNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM---GFIPSV------TTYNTLI 305 (565)
Q Consensus 239 ~~~~~~~~A~~~~~~m~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~~~~~li 305 (565)
...+-+ .++.+|.... ..+-.+.....|.+.......|++++|...|+..... ...++. .+--.+.
T Consensus 425 e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 443333 2355554432 3344456666777777777777777777777666543 111222 1222244
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008454 306 SGHCNKGLLSLAMKFKNLMEKNGIQPN-VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNS 384 (565)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 384 (565)
..+-..++++.|.+.+..+.+. .|+ +..|.-+....-..+...+|...+....... ..++..+..+...+.+...+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhh
Confidence 4455556777777777777665 222 2333333333333466777888877776643 45566666677777777788
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 385 EMGASLYEEMLRN-GIKVDILTYNALILGLCK------------EGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR 451 (565)
Q Consensus 385 ~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (565)
..|.+-|....+. ...+|..+.-+|.+.|.+ .+..++|+.+|.++.+.... |...-|.+.-.++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhc
Confidence 8888766666554 223577777777776653 24578899999999887655 777888888899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 452 KNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK-CMAPDSIILSELYSGLHHCGKDELAMKL 530 (565)
Q Consensus 452 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~ 530 (565)
|++.+|..+|.+..+.. .-...+|-.+.++|...|++..|++.|+...+. .-..+..+.+.|.+++.+.|++.+|.+.
T Consensus 660 g~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred cCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999875 345577888999999999999999999888665 3455778899999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHH
Q 008454 531 FRKMEIRGLLPKGFDKLRT 549 (565)
Q Consensus 531 ~~~m~~~g~~p~~~~~~~l 549 (565)
..........-....++..
T Consensus 739 ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 739 LLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHhCCccchHHhHHH
Confidence 8887666544344444443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=1.6e-12 Score=131.16 Aligned_cols=373 Identities=16% Similarity=0.115 Sum_probs=291.0
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 141 ETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMR 220 (565)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 220 (565)
...-..++.+...|++++|..++.++++. .+..+..|..|...|-..|+.+++...+-.+-
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkq-------------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA 200 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQ-------------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA 200 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------------------CccchhhHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33444566666779999999999999998 56688899999999999999999999887777
Q ss_pred HCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008454 221 DYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTT 300 (565)
Q Consensus 221 ~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 300 (565)
..+.. |...|..+.....+.|+++.|.-.|.+.++.. +++...+---+..|-+.|+...|.+-|.++.......|..-
T Consensus 201 HL~p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 201 HLNPK-DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred hcCCC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 66654 77999999999999999999999999998875 34666666667788899999999999999998754333333
Q ss_pred HHH----HHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------------
Q 008454 301 YNT----LISGHCNKGLLSLAMKFKNLMEKN-GIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN------------ 363 (565)
Q Consensus 301 ~~~----li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------ 363 (565)
+.. +++.+...++.+.|.+.++..... +-..+...++.++..+.+...++.|......+....
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 333 455666777779999988877662 223466778899999999999999999988887621
Q ss_pred ---------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008454 364 ---------------VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNG--IKVDILTYNALILGLCKEGKTKKAAYLV 426 (565)
Q Consensus 364 ---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (565)
+.++... -.++-++......+....+........ +.-+...|.-+..+|...|++.+|+.+|
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred hccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1122222 123334455556666666666666665 4446778999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----
Q 008454 427 KDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE----- 501 (565)
Q Consensus 427 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 501 (565)
..+......-+...|-.+.++|...|.++.|.+.|...+... +-+...--.|...+.+.|+.++|.+.+..+..
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 999987666678899999999999999999999999999863 44556667777888999999999999988642
Q ss_pred ---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 502 ---KCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 502 ---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
.+..|+........+.+...|+.++-...-.+|..
T Consensus 517 ~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 517 AEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 23556667777778889999999987776666654
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=3.2e-12 Score=127.05 Aligned_cols=282 Identities=12% Similarity=0.048 Sum_probs=166.9
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHH
Q 008454 241 SERVDIALGFYKEMRRNRISPNVYT-LNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYN--TLISGHCNKGLLSLA 317 (565)
Q Consensus 241 ~~~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a 317 (565)
.|+++.|.+.+....+.. ++... |........+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555543321 11222 222233335666666666666666553 23332221 234566666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHH
Q 008454 318 MKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV-------VTYNTLINGYGQVGNSEMGASL 390 (565)
Q Consensus 318 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~ 390 (565)
...++++.+... -+......+...|.+.|++++|.+++..+.+.+...+. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 777776666542 25556666666677777777777777776665433211 1222223333333444555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008454 391 YEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCR 470 (565)
Q Consensus 391 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 470 (565)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .|+... .++.+.+..++.+++++..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 5554332 2336667777777777778877777777777663 333321 12333445577777777777777653 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 471 PNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 471 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
-|...+..+...+.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556677777777888888888888777764 5777777777778888888888877777654
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=3.5e-12 Score=127.52 Aligned_cols=262 Identities=13% Similarity=-0.018 Sum_probs=114.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
....++.+.|+++.|.+.+.+..+....+.....-.....+...|+++.|...++.+.+.. +-+...+..+...+...|
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHh
Confidence 3345555566666666666665543322222233333555555666666666666665553 224455556666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HhcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHH
Q 008454 278 IIERAVEVFKNMESMGFIPSVTTYN-TLISGH---CNKGLLSLAMKFKNLMEKNGI---QPNVITFNTLIFGFCKKGKLH 350 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~ 350 (565)
++++|.+.+..+.+.+.. +...+. .-..++ ...+..++..+.+..+.+... +.+...+..+...+...|+.+
T Consensus 202 d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 666666666666655433 222221 111111 111222222223332222211 114455555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 008454 351 EANRIFSEMKATNVSPNVVT---YNTLINGYGQVGNSEMGASLYEEMLRNGIKVDI--LTYNALILGLCKEGKTKKAAYL 425 (565)
Q Consensus 351 ~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~ 425 (565)
+|.+++++..+.. ||... ...........++.+.+.+.++...+.... |. .....+...+.+.|++++|.+.
T Consensus 281 ~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 281 SAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred HHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 5555555555542 22211 011111112223444444444444433111 22 3333444444444455555444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 426 VKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 464 (565)
|+........|+...+..+...+.+.|+.++|.++|++.
T Consensus 358 le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 358 FKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 443222222344444444444444444444444444443
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=4e-12 Score=127.12 Aligned_cols=291 Identities=12% Similarity=-0.003 Sum_probs=183.3
Q ss_pred cCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 008454 240 DSERVDIALGFYKEMRRNRISPN-VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAM 318 (565)
Q Consensus 240 ~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 318 (565)
..|+++.|.+.+....+.. |+ ...+-.........|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4577777777776665542 33 22333445556667777777777777665432222223333466677777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HhcCChHHHHHHHHHH
Q 008454 319 KFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYN-TLINGY---GQVGNSEMGASLYEEM 394 (565)
Q Consensus 319 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~m 394 (565)
..++.+.+... -+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777777642 25566777777777778888777777777776533 322221 111111 2222333333444444
Q ss_pred HHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008454 395 LRNGI---KVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNAST-YSALITGQCVRKNSERAFQLYKSMIRSGCR 470 (565)
Q Consensus 395 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 470 (565)
.+... +.+...+..++..+...|+.++|.+++++..+......... ...........++.+.+.+.++...+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 44322 13677778888888888888888888888877543221111 1112222334577788888888877652 3
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 471 PNK--HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 471 p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
-|. .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++-.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344 55667888888899999999998854444456888888888889999999999998888753
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=5.4e-12 Score=125.46 Aligned_cols=285 Identities=9% Similarity=0.000 Sum_probs=221.0
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHH
Q 008454 206 RKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLN--MVMHAFCKLGIIERAV 283 (565)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~ 283 (565)
.|++++|.+.+....+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 599999998888876643221 222333345557899999999999999875 45543332 3366888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHH
Q 008454 284 EVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV-------ITFNTLIFGFCKKGKLHEANRIF 356 (565)
Q Consensus 284 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 356 (565)
+.++++.+.... +...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999987644 6788888999999999999999999999988755322 13333444444455666677777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 357 SEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVP 436 (565)
Q Consensus 357 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 436 (565)
+.+.+. .+.+......+...+...|+.++|.+++++..+. .++.... ++.+.+..++.+++.+..+...+....
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~- 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD- 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-
Confidence 766443 2457788889999999999999999999999885 3444222 344445669999999999999887554
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 437 NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 437 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
|...+..+.+.+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++....
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6777889999999999999999999999986 699999999999999999999999999987653
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=1.8e-11 Score=123.73 Aligned_cols=365 Identities=12% Similarity=0.031 Sum_probs=272.6
Q ss_pred HHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCC
Q 008454 111 HVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCD 190 (565)
Q Consensus 111 ~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (565)
+..+..+|+...|.+++..++++.| -....|..+..++-..|+.+.+....-.+... .+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-------------------~p 204 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-------------------NP 204 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-------------------CC
Confidence 4456778999999999999999876 56788999999999999999887766555444 45
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH----HH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVY----TL 266 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~ 266 (565)
.+...|-.+.....+.|.+++|.-.|.+..+.... +...+-.-...|-+.|+...|.+-|.++.....+.|.. ..
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i 283 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI 283 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH
Confidence 67789999999999999999999999999998754 56666667788899999999999999998864332322 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--------------
Q 008454 267 NMVMHAFCKLGIIERAVEVFKNMESM-GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP-------------- 331 (565)
Q Consensus 267 ~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-------------- 331 (565)
..+++.+...++.+.|.+.++..... +-..+...++.++..+.+...++.+......+......+
T Consensus 284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~ 363 (895)
T KOG2076|consen 284 RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE 363 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence 45567778888889999999887763 223466778889999999999999998888877622222
Q ss_pred -------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 332 -------------NVITFNTLIFGFCKKGKLHEANRIFSEMKATN--VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 332 -------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
+..++ -++-++......+....+...+.+.. ..-+...|.-+..++...|++..|..+|..+..
T Consensus 364 ~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 364 PNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred ccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 22221 22233334444444444444455544 344567788899999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cC
Q 008454 397 NGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR--------SG 468 (565)
Q Consensus 397 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--------~~ 468 (565)
....-+..+|..+..+|...|.+++|...|+.+...... +...--.|...+-+.|+.++|.+.+..+.. .+
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a 521 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACA 521 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcc
Confidence 866557889999999999999999999999999876432 444556677778889999999999988642 23
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 469 CRPNKHIFEMLMSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 469 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (565)
..|+..........+.+.|+.++-......|
T Consensus 522 ~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 522 WEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4455555555666677777776654443333
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.8e-11 Score=112.56 Aligned_cols=309 Identities=12% Similarity=0.028 Sum_probs=204.7
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 008454 236 SSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI--PSVTTYNTLISGHCNKGL 313 (565)
Q Consensus 236 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~ 313 (565)
.++-...+.+++..-.+.....|.+-+...-+....+.-...|+++|+.+|+++.+...- -|..+|..++-+ +...
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence 444444566666666666666666555544444445555667777788888777766211 155666655533 2221
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 314 LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEE 393 (565)
Q Consensus 314 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 393 (565)
..+.++.+-...--+--+.|+..+.+-|.-.++.++|...|+...+.+ +-....|+.+..-|....+...|.+-++.
T Consensus 313 --skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 --SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred --HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 111222211111012234566667777778888888888888888765 44556778888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008454 394 MLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK 473 (565)
Q Consensus 394 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 473 (565)
.++-... |-..|..|.++|.-.+...-|+-.|++..+.... |...|.+|..+|.+.++.++|++.|+.....| ..+.
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 8886443 7788888888888888888888888888775443 77788888888888888888888888888766 4566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEK----CMAPD--SIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKL 547 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 547 (565)
..+..|...+-+.++..+|.+.+++-++. |...+ ....--|..-+.+.+++++|-......... .+.-..-.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak 544 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAK 544 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHH
Confidence 78888888888888888888888776552 22222 223333556677788888887765555432 44555555
Q ss_pred HHHhhcc
Q 008454 548 RTINCAP 554 (565)
Q Consensus 548 ~ll~~~~ 554 (565)
.+++.+.
T Consensus 545 ~LlReir 551 (559)
T KOG1155|consen 545 ALLREIR 551 (559)
T ss_pred HHHHHHH
Confidence 5555443
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=1.1e-11 Score=111.09 Aligned_cols=291 Identities=14% Similarity=0.093 Sum_probs=190.3
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHH
Q 008454 241 SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS---VTTYNTLISGHCNKGLLSLA 317 (565)
Q Consensus 241 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a 317 (565)
.++.++|.++|-+|.+.. +-+..+.-.|.+.|.+.|.++.|+++.+.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 356777777777776542 22344555666777777777777777777766411111 22333455667777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 318 MKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV----VTYNTLINGYGQVGNSEMGASLYEE 393 (565)
Q Consensus 318 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~ 393 (565)
+.+|..+.+.|.- -..+...|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|..++++
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888877775422 3456667778888888888888888877765433322 2233444455556778888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008454 394 MLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK 473 (565)
Q Consensus 394 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 473 (565)
..+.+.+ .+..--.+.+.+...|++++|.+.++.+.+.+..--..+...|..+|...|+.++....+..+.+.. +..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 8776443 4555556777778888888888888888877554445567778888888888888888888888763 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCC
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHH---CGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g 538 (565)
..-..+........-.+.|..++.+-+.+ +|+...+..|++.-.. .|...+-+.+++.|....
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 33444444444445566666666555553 5888888888876643 455677777777776553
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=8.7e-15 Score=139.01 Aligned_cols=221 Identities=15% Similarity=0.122 Sum_probs=59.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008454 306 SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSE 385 (565)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 385 (565)
..+...++++.|.+.++++...+.. +...+..++.. ...+++++|.++++...+. .++...+..++..+.+.++++
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~ 127 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYD 127 (280)
T ss_dssp ----------------------------------------------------------------------H-HHHTT-HH
T ss_pred ccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHH
Confidence 3333444444444444444443221 23333333333 3444444444444443332 123333444444444444444
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 386 MGASLYEEMLRNG-IKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 386 ~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 464 (565)
++..+++.+.... ...+...|..+...+.+.|+.++|...+++..+.... |....+.++..+...|+.+++.++++..
T Consensus 128 ~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 128 EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 4444444443321 1223444444444444555555555555544443221 3344444444444455554444444444
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 465 IRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRK 533 (565)
Q Consensus 465 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 533 (565)
.+.. +.|...+..+..++...|+.++|..++++..+. .+.|..+...+.+++...|+.++|.++.++
T Consensus 207 ~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 207 LKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT--------------
T ss_pred HHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 4332 233334444444555555555555555554443 122444444455555555555555544443
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=1.3e-14 Score=137.85 Aligned_cols=262 Identities=16% Similarity=0.150 Sum_probs=113.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 233 KFLSSLLDSERVDIALGFYKEMRRNR-ISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNK 311 (565)
Q Consensus 233 ~ll~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 311 (565)
.+...+.+.|++++|+++++...... .+.|...|..+.......++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 56888899999999999996654443 2335555666666777889999999999999987644 56667777777 789
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008454 312 GLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN-VSPNVVTYNTLINGYGQVGNSEMGASL 390 (565)
Q Consensus 312 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 390 (565)
+++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988776543 466778888899999999999999999987542 345777888889999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008454 391 YEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCR 470 (565)
Q Consensus 391 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 470 (565)
+++..+.... |......++..+...|+.+++..+++...+.. ..|...+..+..++...|+.++|+..|++..... +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 9999987443 67888899999999999999988888887653 2355678899999999999999999999999864 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 471 PNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 471 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
.|......+..++...|+.++|.++.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 6888899999999999999999999887754
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.5e-09 Score=102.19 Aligned_cols=392 Identities=13% Similarity=0.072 Sum_probs=251.2
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
-++++..|.++|+.++.... .+...+...+..=-++++...|+.+++..+.. .+... ..
T Consensus 85 sq~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVd-----------------ql 143 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVD-----------------QL 143 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHH-----------------HH
Confidence 45688899999999988653 35556888888888999999999999888775 12222 22
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
|...+..=-..|++..|.++|++-.+ ..|+..+|++.+..=.+.+..+.|..+|+...-. .|++.+|--..+.=.+
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEK 219 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHh
Confidence 33333333334555555555555554 2355555655555555555555555555555432 3555555555554455
Q ss_pred cCCHHHHHHHHHHHHhC-C-----------------------------------CCCC--HHHHHHHHHHHHhcCChhHH
Q 008454 276 LGIIERAVEVFKNMESM-G-----------------------------------FIPS--VTTYNTLISGHCNKGLLSLA 317 (565)
Q Consensus 276 ~g~~~~a~~~~~~m~~~-g-----------------------------------~~p~--~~~~~~li~~~~~~g~~~~a 317 (565)
.|.+..|..+|+...+. | ++-+ ...|..+...--+-|+....
T Consensus 220 ~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gI 299 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGI 299 (677)
T ss_pred cCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhh
Confidence 55555555555544332 1 0101 22222222222223333332
Q ss_pred HHH--------HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH----HH-HH---H
Q 008454 318 MKF--------KNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV--VTYNTL----IN-GY---G 379 (565)
Q Consensus 318 ~~~--------~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l----i~-~~---~ 379 (565)
.+. ++.+...+ +-|-.+|-..+..-...|+.+...++|+..... ++|-. ..|... |+ ++ .
T Consensus 300 Ed~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred HHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 221 12222221 335667777777777788888888888888765 34421 111111 11 11 2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008454 380 QVGNSEMGASLYEEMLRNGIKVDILTYNAL----ILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSE 455 (565)
Q Consensus 380 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 455 (565)
...|.+.+.++|+..++. ++....||..+ .....++.++..|.+++.... |..|-..+|...|..-.+.++++
T Consensus 378 e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHH
Confidence 457888888888888873 33344454433 333446788899999998876 45678888888888888999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 456 RAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC-MAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
.+..+|+..++-+ +-|-.+|......=...|+.+.|..+|.-+++.. +......|.+.|+.-...|.++.|..+|+++
T Consensus 455 RcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 455 RCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 9999999999875 5567888888888888999999999999888763 2334557888888888999999999999999
Q ss_pred HHCC
Q 008454 535 EIRG 538 (565)
Q Consensus 535 ~~~g 538 (565)
.+..
T Consensus 534 L~rt 537 (677)
T KOG1915|consen 534 LDRT 537 (677)
T ss_pred HHhc
Confidence 8764
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=5.2e-12 Score=117.68 Aligned_cols=392 Identities=15% Similarity=0.095 Sum_probs=255.9
Q ss_pred HHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008454 145 IVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGF 224 (565)
Q Consensus 145 ~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 224 (565)
.+..-+..+....+|+..++-+++...++ .....--.+...+.+...+.+|++.|+.....-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~-----------------nag~lkmnigni~~kkr~fskaikfyrmaldqvp 268 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFP-----------------NAGILKMNIGNIHFKKREFSKAIKFYRMALDQVP 268 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccC-----------------CCceeeeeecceeeehhhHHHHHHHHHHHHhhcc
Confidence 33333444455556666666555553322 2222222355677888899999999988877532
Q ss_pred Cc----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---
Q 008454 225 LP----IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS--- 297 (565)
Q Consensus 225 ~p----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--- 297 (565)
.. .....+.+.-.+.+.|++++|+.-|+...+. .||..+-..|+-++...|+-++..+.|.+|+.....+|
T Consensus 269 sink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddk 346 (840)
T KOG2003|consen 269 SINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDK 346 (840)
T ss_pred ccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccc
Confidence 22 2345666777788999999999999998775 47876655566666677999999999999987533333
Q ss_pred ---------HHHHHHHH-----HHHHhcC--ChhHHHHHHHHHHHCCCCCCHH-------------HH--------HHHH
Q 008454 298 ---------VTTYNTLI-----SGHCNKG--LLSLAMKFKNLMEKNGIQPNVI-------------TF--------NTLI 340 (565)
Q Consensus 298 ---------~~~~~~li-----~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~-------------~~--------~~li 340 (565)
....+--| .-.-+.+ +-+++.-.-..++.--+.|+-. .+ -.-.
T Consensus 347 yi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 347 YIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred ccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 22222222 1111111 1111111111111111122210 00 0113
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--H----------------------------------HHHHhcCCh
Q 008454 341 FGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTL--I----------------------------------NGYGQVGNS 384 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--i----------------------------------~~~~~~g~~ 384 (565)
..|.+.|+++.|++++.-+.+..-..-...-+.| + ......|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 4688999999999999877654322111111111 0 001235788
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 385 EMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 385 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 464 (565)
++|.+.|++.....-.-....| .+...+-..|++++|++.|-.+...-. -+..+..-+...|-...+...|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999988876433222233 344556788999999999987754322 26677777888888899999999999888
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 008454 465 IRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGF 544 (565)
Q Consensus 465 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 544 (565)
... ++.|+.+...|...|-+.|+-..|.+.+-+-.+. ++-+..+...|...|....-++++...|++. .-+.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHH
Confidence 765 5778899999999999999999999887666554 6678889888998999999999999999987 55789998
Q ss_pred hHHHHH-hhcccCCCccC
Q 008454 545 DKLRTI-NCAPENGEKES 561 (565)
Q Consensus 545 ~~~~ll-~~~~~~g~~~~ 561 (565)
-|-.++ +|+.+.|+...
T Consensus 661 kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHHHHHHHHHHhcccHHH
Confidence 888777 56666787653
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=2.3e-12 Score=126.18 Aligned_cols=290 Identities=14% Similarity=0.089 Sum_probs=222.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHH
Q 008454 243 RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGF--IPSVTTYNTLISGHCNKGLLSLAMKF 320 (565)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~ 320 (565)
+..+|+..|..+... +.-..+....+.++|...+++++|+++|+.+.+... .-+...|.+.+-.+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467888888885543 333446677888899999999999999999887521 1267777777654433 222322
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008454 321 K-NLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGI 399 (565)
Q Consensus 321 ~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 399 (565)
+ +.+.+. -+-.+.+|.++.++|.-.++.+.|++.|++..+.+ +-...+|+.+..-+.....+|+|...|+..+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 233333 23468899999999999999999999999998864 33678888888888899999999999999887533
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008454 400 KVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEML 479 (565)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (565)
. +-..|..+...|.+.++++.|+-.|+.+.+.+.. +.+....+...+-+.|+.++|+++++++.... +-|...--..
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 2 4455667888899999999999999999987655 67777888888899999999999999999875 4455544455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008454 480 MSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKG 543 (565)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 543 (565)
+..+...+++++|++.++++.+. .+-+..++..+...|-+.|+.+.|+.-|-.+.+.+-++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 66677889999999999999885 3445567888889999999999999999988766544443
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.5e-10 Score=108.65 Aligned_cols=313 Identities=15% Similarity=0.049 Sum_probs=238.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHc
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS--PNVYTLNMVMHAFCKL 276 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~ 276 (565)
+..++-...+.+++++-.+.....|..-+...-+....+.-...+++.|+.+|+++.++.+- -|..+|..++..--..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34566666788899999999999888766666666667777889999999999999887421 3677887776543222
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008454 277 GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIF 356 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 356 (565)
.+ +..+.+-.-.=-+--..|+..+..-|.-.++.++|..+|++..+.+.. ...+|+.+.+-|....+...|.+-+
T Consensus 313 sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22 222222211101124567777888889999999999999999987533 6778999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 357 SEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVP 436 (565)
Q Consensus 357 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 436 (565)
+...+.. +.|-..|..|.++|.-.+-..-|+-.|++..+... -|...|.+|.++|.+.++.++|++.|......|-.
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 9999875 77889999999999999999999999999998744 38999999999999999999999999999887655
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008454 437 NASTYSALITGQCVRKNSERAFQLYKSMIRS----GCRPN--KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSII 510 (565)
Q Consensus 437 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 510 (565)
+...|..|...|-+.++.++|...|..-++. |..-+ ...--.|..-+.+.+++++|..+......-
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-------- 536 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-------- 536 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--------
Confidence 6788999999999999999999999887763 32222 222233555677888888887765444332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 511 LSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 511 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.-..++|..+++++...
T Consensus 537 ----------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 ----------ETECEEAKALLREIRKI 553 (559)
T ss_pred ----------CchHHHHHHHHHHHHHh
Confidence 23356677777766543
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=3.4e-11 Score=107.88 Aligned_cols=287 Identities=14% Similarity=0.123 Sum_probs=223.9
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCH
Q 008454 206 RKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNV------YTLNMVMHAFCKLGII 279 (565)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~ 279 (565)
..+.++|+++|-+|.+.+.. +.++--+|.+.|.+.|.+|.|+.+.+.+.+. ||. .....|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 46899999999999985543 6677788999999999999999999999864 332 3445667778899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHH
Q 008454 280 ERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV----ITFNTLIFGFCKKGKLHEANRI 355 (565)
Q Consensus 280 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~ 355 (565)
+.|+++|..+.+.|.- -......|+..|-...+|++|+++-+++.+.|-.+.. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999876432 5667788999999999999999999999988755442 3345555666667899999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 356 FSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV 435 (565)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (565)
+.+..+.+ +.++..--.+.+.....|++++|.+.++.+.+.+...-..+...|..+|.+.|+.++....+..+.+....
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 99988764 34445555677888999999999999999999877666778899999999999999999999999886544
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 008454 436 PNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ---NEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 436 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~ 502 (565)
++. -..+........-.+.|..++.+-+.. +|+...+..++..-.. .|...+-...+++|+..
T Consensus 282 ~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 ADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 443 334444334445566777766666665 7999999999987543 34566777777777654
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=1.8e-09 Score=105.66 Aligned_cols=332 Identities=13% Similarity=0.019 Sum_probs=219.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA 272 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 272 (565)
..+|..-...|.+.+-++-|+.+|....+.-.. +...|......--..|..+....+|++.... ++-....|-.....
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 345556666677777777777777777664432 5566666666666667788888888887765 23345566666667
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 352 (565)
+-..|++..|..++....+.... +...|.+-+..-.....++.|..+|.+.... .++...|..-++..--.+..++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 77788888888888888776544 6777888888888888888888888877764 45666666666666667788888
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 353 NRIFSEMKATNVSPN-VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDK 431 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 431 (565)
++++++..+. .|+ .-.|-.+.+.+-+.++.+.|...|..-.+. ++-.+-.|-.|...--+.|.+-+|..+++...-
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 8888887765 333 345666677777778888888777765554 333556677777777777888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH------------------------------HHHH
Q 008454 432 NSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFE------------------------------MLMS 481 (565)
Q Consensus 432 ~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~------------------------------~li~ 481 (565)
.+.. +...|-..|+.-.+.|+.+.|..+..++++. ++-+...|. .+..
T Consensus 748 kNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~ 825 (913)
T KOG0495|consen 748 KNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAK 825 (913)
T ss_pred cCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHH
Confidence 7655 7778888888888888888888887777764 233333333 3333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 482 TFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
.|....+++.|.+.|.+.+..+. -...+|..+...+.+.|.-++-.+++.++.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 44444445555555555544321 123344444445555555555555555443
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=2.2e-10 Score=105.95 Aligned_cols=288 Identities=13% Similarity=0.099 Sum_probs=187.8
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 008454 241 SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKF 320 (565)
Q Consensus 241 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 320 (565)
.|++..|+++..+-.+.+-. ....|..-.++.-..|+.+.+-.++.+..+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46677777776665555422 23344445555666677777777777776653344555566666667777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 321 KNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV-------VTYNTLINGYGQVGNSEMGASLYEE 393 (565)
Q Consensus 321 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 393 (565)
++++.+.+.. +.........+|.+.|++.++..++..+.+.|.-.|. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777665432 5566666677777777777777777777776654443 3455555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008454 394 MLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK 473 (565)
Q Consensus 394 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 473 (565)
...+ .+-++..-..++.-+.++|+.++|.++.++..+.+..|+. .....+.+.++.+.-++..+.-... .+-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 5443 3345666667777778888888888888887777665551 1122344566666666666655543 23445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 538 (565)
..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.+++++-...-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 6777788888888888888888886666 46778888888888888888888888877765443
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=3e-10 Score=105.12 Aligned_cols=287 Identities=10% Similarity=0.028 Sum_probs=230.7
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 206 RKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEV 285 (565)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 285 (565)
.|+|.+|.++..+-.+.+-. ....|..-..+--+.|+.+.+-.++.+..+..-.++...+-...+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 48999999999998887755 34455666677778899999999999998764456677777888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 286 FKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV-------ITFNTLIFGFCKKGKLHEANRIFSE 358 (565)
Q Consensus 286 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 358 (565)
++++.+.+.. +.........+|.+.|++.....++..|.+.|.--+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 9999988655 6777888999999999999999999999999865443 4566666666666666665566666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 008454 359 MKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNA 438 (565)
Q Consensus 359 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 438 (565)
.... ...++..-.+++.-+.+.|+.++|.++.++..+++..+.. ...-.+.+-++.+.-.+..+...+.... ++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE-DP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC-Ch
Confidence 5543 3456667778888899999999999999999998877662 2223345667777777777766654333 55
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 439 STYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 439 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
..+..|...|.+.+.+.+|...|+..++. .|+..+|+.+..++.+.|+..+|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78999999999999999999999988876 799999999999999999999999999887654
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.1e-11 Score=121.64 Aligned_cols=290 Identities=10% Similarity=-0.006 Sum_probs=197.8
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 208 KFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI--SPNVYTLNMVMHAFCKLGIIERAVEV 285 (565)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~ 285 (565)
+.++|+..|.++...-.. ...+...+..+|...+++++|.++|+.+.+... .-+..+|...+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 567788888885544322 345666777888888888888888888766431 1255667666644322 122222
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 286 F-KNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364 (565)
Q Consensus 286 ~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 364 (565)
+ +.+.+.. +-...+|.++..+|.-+++.+.|++.|++..+... -...+|+.+..-+.....+|.|...|+......
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 2222221 23577888888888888888888888888877531 167788888888888888888888888776532
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSAL 444 (565)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 444 (565)
+-+-..|.-+...|.+.++++.|+-.|+++.+-+.. +.+....+...+.+.|+.++|+.+++++...+.. |+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 222334445667788888888888888888876544 5666667777778888888888888888776555 55554455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008454 445 ITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDS 508 (565)
Q Consensus 445 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (565)
+..+...+++++|+..++++.+. ++-+..+|..+...|.+.|+.+.|+.-|--+.+...++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 56667778888888888888775 2444566777888888888888888888777776444433
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=3.3e-10 Score=107.07 Aligned_cols=366 Identities=13% Similarity=0.096 Sum_probs=253.6
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008454 144 SIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYG 223 (565)
Q Consensus 144 ~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 223 (565)
....+-+.++|++++|...+...++. |+..+..|.....+|...|+|+++++.-.+.++.+
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l-------------------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~ 179 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL-------------------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN 179 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc-------------------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC
Confidence 34456677899999999999999987 66568899999999999999999999888888755
Q ss_pred CCcCHHHHHHHHHHHHcCCChHHHHH----------------------HHHH---------HHHCC--CCCCHHHHHHHH
Q 008454 224 FLPIIESCNKFLSSLLDSERVDIALG----------------------FYKE---------MRRNR--ISPNVYTLNMVM 270 (565)
Q Consensus 224 ~~p~~~~~~~ll~~~~~~~~~~~A~~----------------------~~~~---------m~~~~--~~p~~~~~~~li 270 (565)
.. -+.++..-.+++-..|++++|+. +++. +.+++ +-|......+..
T Consensus 180 P~-Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf 258 (606)
T KOG0547|consen 180 PD-YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYF 258 (606)
T ss_pred cH-HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 22 25566666667777777665532 1111 11112 224444333333
Q ss_pred HHHHHc--------C-----CHHHHHHHHHHHHhCC------------------CC---CCHH------HHHHHHHHHHh
Q 008454 271 HAFCKL--------G-----IIERAVEVFKNMESMG------------------FI---PSVT------TYNTLISGHCN 310 (565)
Q Consensus 271 ~~~~~~--------g-----~~~~a~~~~~~m~~~g------------------~~---p~~~------~~~~li~~~~~ 310 (565)
..+... + ...++.+.+..-...| .. .|.. +.......+.-
T Consensus 259 ~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 259 GSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred hhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 332210 0 0112222111111001 00 1111 11111122334
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008454 311 KGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASL 390 (565)
Q Consensus 311 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 390 (565)
.|+.-.|..-|+..+.....+ ...|--+..+|....+.++..+.|++....+ +-|..+|..-...+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 678888888899888875432 2337777788999999999999999998875 56777888888888889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--
Q 008454 391 YEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSG-- 468 (565)
Q Consensus 391 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-- 468 (565)
|++.+..... +...|-.+.-+..+.++++++...|++..++-. --+..|+.....+...++++.|.+.|+..++..
T Consensus 417 F~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999987443 667788888888899999999999999988633 367789999999999999999999999998752
Q ss_pred ---CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 469 ---CRPNKH--IFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 469 ---~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
+..+.. +-..++.. .-.+++..|.++++++.+.+.+ ....|..|...-.+.|+.++|+++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111222 22222222 2348999999999999986433 44578999999999999999999999864
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.47 E-value=4.6e-09 Score=102.81 Aligned_cols=356 Identities=9% Similarity=-0.005 Sum_probs=205.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCC---------------------CCCcHHHHHHHHHhcccCCCCh
Q 008454 135 PSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDS---------------------FDLPSKLFDSILYSYRMCDSSP 193 (565)
Q Consensus 135 ~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 193 (565)
+...+.+.|..=+..|-+.|..-....++...+.-|. +...+.+|...+.. .+...
T Consensus 474 gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv---fp~k~ 550 (913)
T KOG0495|consen 474 GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV---FPCKK 550 (913)
T ss_pred ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh---ccchh
Confidence 3444555555555555555555555555554444332 11222233333322 23344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAF 273 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 273 (565)
.+|...+..=-..|..+....+|++....-.+ ....|-.....+...|++..|..++....+.... +...|...+..-
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle 628 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLE 628 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHh
Confidence 45555444444556666666666666554322 4445555555556666666666666666554322 455666666666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 008454 274 CKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN-VITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 274 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A 352 (565)
.....++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+. -|+ ...|..+...+-+.++++.|
T Consensus 629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHH
Confidence 6666666666666665543 345555554444444456666666666665554 222 33444444555555666665
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 353 NRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
.+.|..-.+. ++-....|..+...--+.|.+-.|..+++...-.+.+ +...|...|.+-.+.|..+.|..++.+..+.
T Consensus 705 R~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 705 REAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555443322 2233344444444445555666666666666555443 5556666666666666666666555554332
Q ss_pred C-----------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 433 S-----------------------------LVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 433 ~-----------------------------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
- +.-|....-.+...|.....+++|.+.|.+.+..+ +-+..+|..+...+
T Consensus 783 cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 783 CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFE 861 (913)
T ss_pred CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHH
Confidence 1 22355566677777888889999999999999875 55568899999999
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 008454 484 CQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~ 502 (565)
.++|.-+.-.+++......
T Consensus 862 l~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHhCCHHHHHHHHHHHhcc
Confidence 9999999888998887664
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=3.7e-09 Score=100.17 Aligned_cols=223 Identities=16% Similarity=0.024 Sum_probs=177.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008454 274 CKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEAN 353 (565)
Q Consensus 274 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 353 (565)
.-.|+.-.|..-|+..+.....++ ..|--+..+|....+.++.++.|+...+.+.. |+.+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 346788899999999988754433 23777778899999999999999999987643 6777877788888889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008454 354 RIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNS 433 (565)
Q Consensus 354 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 433 (565)
.=|++..... +-+...|..+.-+..+.+.++++...|++..++ ++-.+.+|+.....+...+++++|.+.|+...+..
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999998764 445667777777888999999999999999987 44478899999999999999999999999987642
Q ss_pred CC-----CCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 434 LV-----PNAS--TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 434 ~~-----p~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
.. .+.. +--.++. +.-.+++..|.+++..+++.. +-....|..|...-.+.|+.++|+++|++....
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22 1111 1122222 223489999999999999864 344678999999999999999999999988654
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=1.7e-11 Score=123.35 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=54.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 008454 250 FYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGI 329 (565)
Q Consensus 250 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 329 (565)
++-.+...|+.||..||..+|.-||..|+.+.|- +|.-|.-.....+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4445555666666666666666666666666665 6666665555555666666666666666555544
Q ss_pred CCCHHHHHHHHHHHHHcCCHHH
Q 008454 330 QPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 330 ~~~~~~~~~li~~~~~~g~~~~ 351 (565)
.|...+|..|..+|...||...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH
Confidence 4556666666666666666544
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=8.2e-10 Score=114.84 Aligned_cols=216 Identities=12% Similarity=0.074 Sum_probs=138.7
Q ss_pred chhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCc
Q 008454 156 FKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAH---------RKKFRNATDTFCQMRDYGFLP 226 (565)
Q Consensus 156 ~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~p 226 (565)
+++|..++++.++. .|.++..|..+..+|.. .+++++|...+++..+.+..
T Consensus 277 ~~~A~~~~~~Al~l-------------------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~- 336 (553)
T PRK12370 277 LQQALKLLTQCVNM-------------------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN- 336 (553)
T ss_pred HHHHHHHHHHHHhc-------------------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-
Confidence 45677777776665 44556666666655442 23477888888888776644
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLIS 306 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 306 (565)
+..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~ 414 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLW 414 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHH
Confidence 67777777777778888888888888877764 224566777777778888888888888887776433 2222333444
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 008454 307 GHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEM 386 (565)
Q Consensus 307 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 386 (565)
.+...|++++|...++++.....+-+...+..+..++...|++++|...+.++.... +.+....+.+...|...| ++
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~ 491 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ER 491 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HH
Confidence 556677788888887777654322244456666677777888888888877765441 222333444444555555 36
Q ss_pred HHHHHHHHHH
Q 008454 387 GASLYEEMLR 396 (565)
Q Consensus 387 A~~~~~~m~~ 396 (565)
|...++.+.+
T Consensus 492 a~~~l~~ll~ 501 (553)
T PRK12370 492 ALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6.2e-09 Score=100.49 Aligned_cols=284 Identities=12% Similarity=0.055 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFC 344 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 344 (565)
....-..-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+-.++.+.- +-...+|-++.--|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHH
Confidence 33334445566788888888888887763 3355555666668888888888888888887763 346778888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 345 KKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 345 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (565)
..|+..+|.+.|.+....+ +.=...|-.....|.-.|..++|+..+...-+. ++-....+--+..-|.+.++.+.|.+
T Consensus 324 ~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 8899999999998876543 122356777888888888889998888877664 11112223335556778899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS--GC----RPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
.|.+....... |+..++.+.......+.+.+|..+|+..+.. .+ .--..+++.|..++.+.+.+++|+..+++
T Consensus 402 Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 99998876433 7778888888888899999999999988842 11 11345688999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccC
Q 008454 499 MLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPEN 556 (565)
Q Consensus 499 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 556 (565)
.+.. .+-+..++.++.-.|...|+++.|.+.|.+. ..+.|+..+...++..+.+.
T Consensus 481 aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa--L~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 481 ALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA--LALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH--HhcCCccHHHHHHHHHHHHh
Confidence 9987 4458899999999999999999999999988 45678888777777655544
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.38 E-value=4.6e-08 Score=96.12 Aligned_cols=389 Identities=17% Similarity=0.123 Sum_probs=255.6
Q ss_pred hhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChH
Q 008454 115 KVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPL 194 (565)
Q Consensus 115 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (565)
...++|+..+++.+.+.+..| --.++.....-.|...|+-++|.+..+..++. ...+.+
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~--eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-------------------d~~S~v 76 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFP--EHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-------------------DLKSHV 76 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCC--ccchhHHhccchhhcccchHHHHHHHHHHhcc-------------------Ccccch
Confidence 345689999999998888543 34567777777788889999999988877765 344667
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 274 (565)
.|..+.-.+...+++++|++.|......+.. |...|.-+.-.-.+.++++.....-..+.+.. +-....|..+..++.
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQH 154 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHH
Confidence 7888888888888999999999999886643 66677666666666777777766666665542 224556777777788
Q ss_pred HcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 275 KLGIIERAVEVFKNMESMG-FIPSVTTYNTLI------SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
-.|+...|..++++..+.. -.|+...|.... ....+.|..++|++.+..-... +.-....-..-...+.+.+
T Consensus 155 L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~ 233 (700)
T KOG1156|consen 155 LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHh
Confidence 8889999998888887653 245555554432 3345577777777776655433 1112222334456778888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHH-HHHHHHHH-----------------------------
Q 008454 348 KLHEANRIFSEMKATNVSPNVVTYNTL-INGYGQVGNSEMGA-SLYEEMLR----------------------------- 396 (565)
Q Consensus 348 ~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~----------------------------- 396 (565)
++++|..++..+... .||...|... ..++.+-.+.-++. .+|....+
T Consensus 234 ~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred hHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence 999999999888877 3565555543 33443233333333 44444332
Q ss_pred -----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HhCCC----------CCCHH--HHHHHHHHHHhc
Q 008454 397 -----NGIKVDILTYNALILGLCKEGKTKKAAYLVKDL--------DKNSL----------VPNAS--TYSALITGQCVR 451 (565)
Q Consensus 397 -----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~----------~p~~~--~~~~li~~~~~~ 451 (565)
.|+.+ ++..+...|- +..++. +++++ ...|. .|... ++-.++..+-+.
T Consensus 312 ~~~l~Kg~p~---vf~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~ 384 (700)
T KOG1156|consen 312 RPLLSKGVPS---VFKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL 384 (700)
T ss_pred HHHhhcCCCc---hhhhhHHHHh---chhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence 22221 1111221111 111111 22221 11111 23333 456677888899
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 452 KNSERAFQLYKSMIRSGCRPNK-HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKL 530 (565)
Q Consensus 452 ~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 530 (565)
|+++.|..+++.++++ .|+. ..|..=...+...|++++|..++++..+.+ .+|..+-..-..-..++++.++|.++
T Consensus 385 g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 385 GDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred ccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHH
Confidence 9999999999999987 5553 455555677888999999999999998874 34666555667777889999999999
Q ss_pred HHHHHHCCC
Q 008454 531 FRKMEIRGL 539 (565)
Q Consensus 531 ~~~m~~~g~ 539 (565)
...+...|.
T Consensus 462 ~skFTr~~~ 470 (700)
T KOG1156|consen 462 LSKFTREGF 470 (700)
T ss_pred HHHhhhccc
Confidence 999988875
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=4.9e-10 Score=116.50 Aligned_cols=251 Identities=12% Similarity=0.039 Sum_probs=183.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH---------hCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccC
Q 008454 119 DYVLSLEFFTWVQTHKPSSLTLETHSIVLHILT---------KNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMC 189 (565)
Q Consensus 119 ~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~---------~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (565)
++..|+++|+.+....| .+...|..+..++. ..+++++|...++++++. .
T Consensus 276 ~~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l-------------------d 334 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL-------------------D 334 (553)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-------------------C
Confidence 56789999999998765 45666666665443 224478899999988887 5
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 190 DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMV 269 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 269 (565)
|.++.++..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.... +...+..+
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~ 412 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITK 412 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHH
Confidence 668889999999999999999999999999997744 6788899999999999999999999999887533 23333444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 270 MHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL 349 (565)
Q Consensus 270 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 349 (565)
+..+...|++++|+..++++.+...+-+...+..+..++...|+.++|...+.++.... +.+....+.+...|+..|
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--
Confidence 55567789999999999998765322245567778888999999999999999876652 223445566666777777
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008454 350 HEANRIFSEMKATN-VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNG 398 (565)
Q Consensus 350 ~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 398 (565)
++|...++.+.+.. ..+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 490 ~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 47888777766531 11222222 33334456676666666 7777653
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=8.5e-10 Score=101.76 Aligned_cols=200 Identities=14% Similarity=0.110 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILG 412 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 412 (565)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555666666666666666666665542 233455555666666666666666666666655332 44555666666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVP-NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDR 491 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 491 (565)
+...|++++|...++++......+ ....+..+...+...|++++|.+.+.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 666777777777777665532211 23455556666777777777777777777653 3345566677777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 492 AAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777665 334555566666777777777777777776644
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=2.3e-07 Score=87.88 Aligned_cols=385 Identities=9% Similarity=0.032 Sum_probs=259.6
Q ss_pred CChHHHHHHHH-HHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHH
Q 008454 118 KDYVLSLEFFT-WVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVF 196 (565)
Q Consensus 118 ~~~~~al~~f~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (565)
++...|.++|+ |+. +.|+..++...|+.=.+-+.++.|++++++++- +-|+...|
T Consensus 155 gNi~gaRqiferW~~----w~P~eqaW~sfI~fElRykeieraR~IYerfV~--------------------~HP~v~~w 210 (677)
T KOG1915|consen 155 GNIAGARQIFERWME----WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--------------------VHPKVSNW 210 (677)
T ss_pred cccHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------------------ecccHHHH
Confidence 45666777765 443 345666777777777777777777777766554 33566666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC-CCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDY-GFL-PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN--VYTLNMVMHA 272 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~ 272 (565)
-...+.=.++|....|..+|+...+. |-. -+...+.++...=.+++.++.|.-+|+-.++. ++.+ ...|..+...
T Consensus 211 ikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~f 289 (677)
T KOG1915|consen 211 IKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAF 289 (677)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHH
Confidence 66677777778888888888777653 210 12233444444444566677777777776654 2222 3444444443
Q ss_pred HHHcCCHHHHHHH--------HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHH--
Q 008454 273 FCKLGIIERAVEV--------FKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV--ITFNTLI-- 340 (565)
Q Consensus 273 ~~~~g~~~~a~~~--------~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li-- 340 (565)
=-+-|+.....+. |+.+.+.+ +-|-.+|-..+..-...|+.+...+++++.+.+ ++|-. ..|.-.|
T Consensus 290 EKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 290 EKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYL 367 (677)
T ss_pred HHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHH
Confidence 3344554433322 33344433 347778888888888899999999999999876 34421 1122211
Q ss_pred --H----HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 341 --F----GFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGY----GQVGNSEMGASLYEEMLRNGIKVDILTYNALI 410 (565)
Q Consensus 341 --~----~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 410 (565)
+ .-....+.+.+.++++...+. ++-...||..+=-.| .+..++..|.+++...+. .-|-..+|...|
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YI 444 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYI 444 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHH
Confidence 1 123467899999999998884 455566666543333 467899999999998875 467888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCH
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSG-CRPNKHIFEMLMSTFCQNEDF 489 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~ 489 (565)
..-.+.++++.+.++++...+.+.. +..+|......-...|+.+.|..+|.-+++.. .......|...|..=...|.+
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 9999999999999999999998765 77788888777778999999999999998752 122345567777777789999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 008454 490 DRAAEVLLEMLEKCMAPDSIILSELYSGLH-----HCG-----------KDELAMKLFRKME 535 (565)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-----~~g-----------~~~~A~~~~~~m~ 535 (565)
+.|..+++++++.. +...+|-++...-. ..| ....|.++|++..
T Consensus 524 ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 524 EKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 99999999999863 33445555544333 333 5567888888754
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=6.4e-10 Score=99.85 Aligned_cols=230 Identities=13% Similarity=0.051 Sum_probs=183.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL 276 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 276 (565)
+.+.++|.+.|.+.+|.+-|+...+.- |-+++|-.|-+.|.+.+++..|+.+|.+-.+. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 568889999999999999999887754 56778888889999999999999999887764 233455556677888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008454 277 GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIF 356 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 356 (565)
++.++|.++|+...+... .++.....+...|.-.++.+.|+++++++.+.|+. +...|+.+.-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999887642 36666667777888889999999999999999976 8888888888888889999999888
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 357 SEMKATNVSPN--VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 357 ~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
++....-..|+ ...|..+.......||+..|.+.|.-....+.. +...++.|.-.-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88776433333 345667777777888999999988888776543 6677888887788889999998888877654
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=1.3e-09 Score=100.59 Aligned_cols=197 Identities=11% Similarity=0.015 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 274 (565)
.+..+...|...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 3334444444445555555555444443211 33444444444455555555555555444432 123334444444455
Q ss_pred HcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008454 275 KLGIIERAVEVFKNMESMGF-IPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEAN 353 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 353 (565)
..|++++|.+.+++...... ......+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555443211 11223344445555555555555555555554321 13444555555555566666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 354 RIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEML 395 (565)
Q Consensus 354 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 395 (565)
+.+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 665555544 13334444455555555566666655555544
No 61
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.31 E-value=5.3e-07 Score=88.65 Aligned_cols=270 Identities=12% Similarity=0.096 Sum_probs=153.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCcCHHHHHHHHHHHHcCCChH---HHHHHHHHHHHCCCCCC
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYG------FLPIIESCNKFLSSLLDSERVD---IALGFYKEMRRNRISPN 262 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~ll~~~~~~~~~~---~A~~~~~~m~~~~~~p~ 262 (565)
+|..-+-.|..+++.+++++|-+.+....... .+.+-..|+.+.....+..+.- ....+++.+... -+|
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftD 245 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTD 245 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcH
Confidence 45556777888888999999988888775431 1224556666666666554322 233444444332 234
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------C------ChhHHH
Q 008454 263 --VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNK----------------G------LLSLAM 318 (565)
Q Consensus 263 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g------~~~~a~ 318 (565)
...|++|...|.+.|.+++|.++|++....- .++.-|..+.+.|+.- | +++-.+
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 3568888888999999999999888876541 2333333444444321 1 122222
Q ss_pred HHHHHHHHCC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhc
Q 008454 319 KFKNLMEKNG-----------IQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSP------NVVTYNTLINGYGQV 381 (565)
Q Consensus 319 ~~~~~m~~~g-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~ 381 (565)
.-|+.+...+ -+-++..|..-+.. ..|+..+....+.++.+. +.| -...|..+.+.|-..
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhc
Confidence 3333333321 01133333333332 245666777777776653 111 123466777777888
Q ss_pred CChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----------------CHHHH
Q 008454 382 GNSEMGASLYEEMLRNGIKVD---ILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVP-----------------NASTY 441 (565)
Q Consensus 382 g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------------~~~~~ 441 (565)
|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|+++++.....--.| +...|
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 888888888888877644322 3455555566666777788888777664321111 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 442 SALITGQCVRKNSERAFQLYKSMIRSG 468 (565)
Q Consensus 442 ~~li~~~~~~~~~~~A~~~~~~m~~~~ 468 (565)
...+..--..|-++....+|+++++..
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 444444445566667777777776654
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=4.5e-10 Score=100.83 Aligned_cols=234 Identities=13% Similarity=0.058 Sum_probs=171.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 008454 262 NVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITF-NTLI 340 (565)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li 340 (565)
|-+.-+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||..|-.+|.+..+...|+.++.+-.+. .|..+|| .-+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3344466777888888888888888877665 456777888888888888888888888877765 3444444 4455
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 341 FGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTK 420 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (565)
..+-..++.++|.++++...+.. +.++....++...|.-.++.+.|+.+|.++.+.|+. +...|+.+.-+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 67777788888888888877764 556666677777777788888888888888888876 7778888888888888888
Q ss_pred HHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 421 KAAYLVKDLDKNSLVPN--ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
-++.-|......--.|+ ...|..+.......|++..|.+.|+-.+.++ ..+...++.|.-.-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 88888777765433333 3356666666677788888888888777664 44566777777777778888888888777
Q ss_pred HHHc
Q 008454 499 MLEK 502 (565)
Q Consensus 499 ~~~~ 502 (565)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 6653
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=2.8e-08 Score=100.07 Aligned_cols=293 Identities=14% Similarity=0.098 Sum_probs=208.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL--- 276 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--- 276 (565)
...+...|++++|++.++.-...- .............+.+.|+.++|..+|..+++.++ .|...|..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQI-LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 456678899999999998865543 32566778888999999999999999999998863 3455555555555332
Q ss_pred --CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008454 277 --GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLS-LAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEAN 353 (565)
Q Consensus 277 --g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 353 (565)
.+.+...++|+++...- |.......+.-.+.....+. .+..++..+...|++ .+++.+-..|....+.+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 25777888999887653 33333333322233322333 344567777888865 35666666666555566666
Q ss_pred HHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 354 RIFSEMKAT----N----------VSPNV--VTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEG 417 (565)
Q Consensus 354 ~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 417 (565)
+++..+... + -+|.. .++..+...|...|++++|++++++.+++... .+..|..-...+-..|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCC
Confidence 666665432 1 12333 24456677888999999999999999987433 4788888899999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHhcCCH
Q 008454 418 KTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHI--------FEMLMSTFCQNEDF 489 (565)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--------~~~li~~~~~~g~~ 489 (565)
++.+|.+.++.....+.. |...-+..+..+.++|+.++|.+++....+.+..|-... ......+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999988765 777778888889999999999999999887664333221 23456678899999
Q ss_pred HHHHHHHHHHHH
Q 008454 490 DRAAEVLLEMLE 501 (565)
Q Consensus 490 ~~A~~~~~~~~~ 501 (565)
..|++.|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999888766654
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.28 E-value=1.5e-06 Score=85.48 Aligned_cols=372 Identities=12% Similarity=0.089 Sum_probs=225.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCC-----CCcHHHHHHHHHhccc----
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSF-----DLPSKLFDSILYSYRM---- 188 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~-----~~~~~~~~~~~~~~~~---- 188 (565)
+-|..++.+++.-++- +++.-...+..|++.+++++|.+.+..++....+ ..+..+|..+......
T Consensus 152 ~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~ 226 (835)
T KOG2047|consen 152 GLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDK 226 (835)
T ss_pred CChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcch
Confidence 3456677777766653 3445667788999999999999999888765321 1233444333322111
Q ss_pred -----------------CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC----------
Q 008454 189 -----------------CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDS---------- 241 (565)
Q Consensus 189 -----------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---------- 241 (565)
.+--...|.+|.+.|.+.|.+++|.++|++....- ..+.-+..+.++|+..
T Consensus 227 ~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me 304 (835)
T KOG2047|consen 227 VQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME 304 (835)
T ss_pred hcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 11123578999999999999999999999987642 2333444444444321
Q ss_pred ------C------ChHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--
Q 008454 242 ------E------RVDIALGFYKEMRRNRI-----------SPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIP-- 296 (565)
Q Consensus 242 ------~------~~~~A~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-- 296 (565)
+ +++-.+.-|+.+...+. +-++..|..-+. +..|+..+-...|.+..+. +.|
T Consensus 305 ~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~k 381 (835)
T KOG2047|consen 305 LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKK 381 (835)
T ss_pred hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCccc
Confidence 1 12233444444433221 123333433332 2456677777778777654 222
Q ss_pred ----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------
Q 008454 297 ----SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN---VITFNTLIFGFCKKGKLHEANRIFSEMKATN------ 363 (565)
Q Consensus 297 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------ 363 (565)
-...|..+...|-..|+++.|..+|++..+-..+-- ..+|....+.=.+..+++.|+++++.....-
T Consensus 382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 235677888899999999999999999876543211 3456666666677888999999888765321
Q ss_pred -----CC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 364 -----VS------PNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 364 -----~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
.+ -+...|...++.--..|-++....+|+.+.+..+. ++...-.....+-.+.-++++.+++++-...
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 01 12233555555555677888888899988887654 3333333444445566677888877765554
Q ss_pred CCCCCHH-HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHH
Q 008454 433 SLVPNAS-TYSALITGQCV---RKNSERAFQLYKSMIRSGCRPNKHIFEMLM--STFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 433 ~~~p~~~-~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~ 501 (565)
-..|+.. .|+..+..+.+ ...++.|..+|++.++ |++|...-+-.|+ ..=.+.|....|+.+++++..
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3345543 45655555543 2357888888888888 6665543222222 122234666777777776543
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=2.8e-08 Score=100.09 Aligned_cols=299 Identities=13% Similarity=0.078 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 141 ETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMR 220 (565)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 220 (565)
+..-....++...|++++|++.+++..+. ..............+.+.|+.++|..+|..+.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~-------------------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li 65 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ-------------------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELI 65 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh-------------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566677889999999999999875554 23345667788899999999999999999999
Q ss_pred HCCCCcCHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCC
Q 008454 221 DYGFLPIIESCNKFLSSLLD-----SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGII-ERAVEVFKNMESMGF 294 (565)
Q Consensus 221 ~~~~~p~~~~~~~ll~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~ 294 (565)
+.++. +...|..+..++.- ....+....+|+++...- |.......+.-.+.....+ ..+...+..+...|+
T Consensus 66 ~rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 66 DRNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred HHCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 99854 55666666666622 235778889999887653 3333332222222222223 245556677777786
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 295 IPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN----G----------IQPNVI--TFNTLIFGFCKKGKLHEANRIFSE 358 (565)
Q Consensus 295 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 358 (565)
+ .+|+.|-..|......+-..+++...... | -.|+.. ++..+...|...|++++|++++++
T Consensus 143 P---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~ 219 (517)
T PF12569_consen 143 P---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDK 219 (517)
T ss_pred c---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5 34555656666555555555666655432 1 123443 445567788899999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 008454 359 MKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNA 438 (565)
Q Consensus 359 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 438 (565)
..+.. +..+..|..-.+.+-+.|++.+|.+.++.....+.. |...-+..+..+.+.|++++|.+++......+..|..
T Consensus 220 aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 220 AIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred HHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 99874 334677888899999999999999999999998665 8888888999999999999999999988776643322
Q ss_pred H--------HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 439 S--------TYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 439 ~--------~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
. .......+|.+.|++..|++.|....+
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 124456788899999999887776654
No 66
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=5.1e-10 Score=112.95 Aligned_cols=249 Identities=12% Similarity=0.097 Sum_probs=156.0
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 216 FCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI 295 (565)
Q Consensus 216 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 295 (565)
+-.+...|+.|+-.+|..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 344455555566666666666666666665555 5555554444455555555555555555555443 3
Q ss_pred CCHHHHHHHHHHHHhcCChhH-----------------------HHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 296 PSVTTYNTLISGHCNKGLLSL-----------------------AMKFKNLMEK-NGIQPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 296 p~~~~~~~li~~~~~~g~~~~-----------------------a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~ 351 (565)
|...+|..|..+|...|+... ...++..+.- .+.-||.. ..+......|-++.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaq 157 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQ 157 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHH
Confidence 555556666666666555433 2222222111 11122222 23444455677777
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 352 ANRIFSEMKATN-VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 352 A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
+++++..+.... ..|.. .+++-+.... ....++........-.++..+|.+++.+-...|+.+.|..++.+|.
T Consensus 158 llkll~~~Pvsa~~~p~~----vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQ----VFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCcccccchHH----HHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 777776664432 11111 1244433322 2233333333322225899999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008454 431 KNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNED 488 (565)
Q Consensus 431 ~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 488 (565)
+.|+..+...|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999898888888766 88888999999999999999999999998888888665
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.6e-11 Score=80.93 Aligned_cols=49 Identities=43% Similarity=0.830 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008454 261 PNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHC 309 (565)
Q Consensus 261 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 309 (565)
||..+||.+|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444444
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.23 E-value=6.9e-07 Score=88.08 Aligned_cols=402 Identities=13% Similarity=0.110 Sum_probs=213.3
Q ss_pred hhhccCCChHHHHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHH
Q 008454 98 TALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSK 177 (565)
Q Consensus 98 ~~~~~~l~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~ 177 (565)
...+.+...-...++.+.+-++-+.|.+..+...+++.- +..-|+.+.-+.-..+++++|...+..++..+
T Consensus 35 ~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~--S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~------- 105 (700)
T KOG1156|consen 35 KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK--SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE------- 105 (700)
T ss_pred HhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc--cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-------
Confidence 334445555566666677777777777777777765432 22334444444444467788888887777663
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 178 LFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
+.+..++.-+.-.-++.|+++.....-....+.... ....|..+..+..-.|+...|..++++..+.
T Consensus 106 ------------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 106 ------------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred ------------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223333333333334444555544444444443211 2334444444555555555555555554433
Q ss_pred C-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 008454 258 R-ISPNVYTLNMVM------HAFCKLGIIERAVEVFKNMESMGFIPSVTTY-NTLISGHCNKGLLSLAMKFKNLMEKNGI 329 (565)
Q Consensus 258 ~-~~p~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~ 329 (565)
. -.|+...|.... ....+.|.+++|++.+...... ..|...+ .+-...+.+.+++++|..++..+...
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-- 248 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER-- 248 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--
Confidence 2 123333332211 1223344444444444333221 0111111 22333444555555555555555544
Q ss_pred CCCHHHHHHHH-HHHHHcC-----------------------------------CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008454 330 QPNVITFNTLI-FGFCKKG-----------------------------------KLHEANRIFSEMKATNVSPNVVTYNT 373 (565)
Q Consensus 330 ~~~~~~~~~li-~~~~~~g-----------------------------------~~~~A~~~~~~m~~~~~~~~~~~~~~ 373 (565)
.||...|...+ .++.+.. -.+..-+++..+.+.|+++ ++..
T Consensus 249 nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~d 325 (700)
T KOG1156|consen 249 NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKD 325 (700)
T ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhh
Confidence 23333333222 2221111 1222333444444455432 2333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH--------CCC----------CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008454 374 LINGYGQVGNSEMGASLYEEMLR--------NGI----------KVDI--LTYNALILGLCKEGKTKKAAYLVKDLDKNS 433 (565)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~m~~--------~~~----------~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 433 (565)
+...|-.-...+ ++++++. .|. .|.. .++..++..+-..|+++.|...++.....
T Consensus 326 l~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH- 400 (700)
T KOG1156|consen 326 LRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH- 400 (700)
T ss_pred hHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-
Confidence 333322211111 3332221 111 2333 45567888899999999999999999875
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCH--
Q 008454 434 LVPNA-STYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMA--PDS-- 508 (565)
Q Consensus 434 ~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~-- 508 (565)
.|+. ..|-.=.+.+...|++++|...+++..+.. .+|...-..-..-..++++.++|.++.....+.|.. .+.
T Consensus 401 -TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~ 478 (700)
T KOG1156|consen 401 -TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAE 478 (700)
T ss_pred -CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHH
Confidence 3443 345555688999999999999999999876 566665556677778899999999999888777641 011
Q ss_pred --HHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 008454 509 --IILSEL--YSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 509 --~~~~~l--i~~~~~~g~~~~A~~~~~~m~ 535 (565)
-+|-.+ ..+|.+.|++.+|++=|..+.
T Consensus 479 mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 479 MQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 123333 456778888877776555543
No 69
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=3.2e-11 Score=80.52 Aligned_cols=50 Identities=36% Similarity=0.526 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhccc
Q 008454 506 PDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPE 555 (565)
Q Consensus 506 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 555 (565)
||..+|+.+|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777776653
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.8e-07 Score=85.36 Aligned_cols=396 Identities=10% Similarity=0.060 Sum_probs=207.4
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHH
Q 008454 117 QKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVF 196 (565)
Q Consensus 117 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (565)
++|+..|+.+.++...... .-...+-.++.++..+.|++++|...+.-+.+.. .++..++
T Consensus 35 ~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------------------~~~~el~ 94 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------------------DAPAELG 94 (557)
T ss_pred cccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------------------CCCcccc
Confidence 4577778777776653221 1122344567777788888888888888777652 2333444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCN-KFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
-.|.-++.-.|.+.+|..+-.+.. +...++ .++....+.++-++-..+-..+... ..---++......
T Consensus 95 vnLAcc~FyLg~Y~eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYm 163 (557)
T KOG3785|consen 95 VNLACCKFYLGQYIEAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYM 163 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHH
Confidence 455555556677777766655543 222333 3334444555555555555444321 1122223333333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CC----
Q 008454 276 LGIIERAVEVFKNMESMGFIPSVTTYNT-LISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKK--GK---- 348 (565)
Q Consensus 276 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~---- 348 (565)
.-.+.+|++++......+ |+-...|. +.-+|.+..-++-+.+++.-..+. ++.+..+.|.......+. |+
T Consensus 164 R~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHH
Confidence 345667777777766532 33344443 334455666666666666655543 222333334333333322 11
Q ss_pred -----------------------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008454 349 -----------------------------LHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGI 399 (565)
Q Consensus 349 -----------------------------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 399 (565)
-+.|++++--+.+. - +..-..|+-.|.+.+++.+|..+.+++.-.
T Consensus 241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt-- 314 (557)
T KOG3785|consen 241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPT-- 314 (557)
T ss_pred HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCC--
Confidence 12233332222221 1 122233444556677777777766655321
Q ss_pred CCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008454 400 KVDILTYNALILGL-----CKEGKTKKAAYLVKDLDKNSLVPNAS-TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK 473 (565)
Q Consensus 400 ~~~~~~~~~li~~~-----~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 473 (565)
.|-......++.+- .....+.-|...|+-.-+.+..-|.. --.++...+.-..++++.+-+++.+..-= ..|.
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD 393 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDD 393 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcc
Confidence 22222222222211 11122344555555444433322221 23445555566667777777777766542 2333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH-hh
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTI-NC 552 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~ 552 (565)
..--.+.++.+..|++.+|+++|-++....++.+......|.++|.+.|+++.|+.++-++ +-..+...+..+| .-
T Consensus 394 ~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 394 DFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIAND 470 (557)
T ss_pred hhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHH
Confidence 3333477888889999999999977766555644444566678889999999887776554 3334556666555 34
Q ss_pred cccC
Q 008454 553 APEN 556 (565)
Q Consensus 553 ~~~~ 556 (565)
|-+.
T Consensus 471 CYk~ 474 (557)
T KOG3785|consen 471 CYKA 474 (557)
T ss_pred HHHH
Confidence 4433
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=9e-07 Score=89.02 Aligned_cols=378 Identities=11% Similarity=0.001 Sum_probs=247.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHH
Q 008454 136 SSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDT 215 (565)
Q Consensus 136 ~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 215 (565)
+..+...|..+.-++.+.|+|..+.+.|++.+.- +-.....|+.+...|...|.-..|+.+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-------------------~~~~~e~w~~~als~saag~~s~Av~l 379 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-------------------SFGEHERWYQLALSYSAAGSDSKAVNL 379 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-------------------hhhhHHHHHHHHHHHHHhccchHHHHH
Confidence 3456778888888888888888888888877664 223456788888888888988888888
Q ss_pred HHHHHHCCCCc-CHHHHHHHHHHHHc-CCChHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CC
Q 008454 216 FCQMRDYGFLP-IIESCNKFLSSLLD-SERVDIALGFYKEMRRN--RI--SPNVYTLNMVMHAFCKL-----------GI 278 (565)
Q Consensus 216 ~~~~~~~~~~p-~~~~~~~ll~~~~~-~~~~~~A~~~~~~m~~~--~~--~p~~~~~~~li~~~~~~-----------g~ 278 (565)
++.-......| +...+-..-..|.+ .+.+++++++-.+.... +. ......|..+.-+|... ..
T Consensus 380 l~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~ 459 (799)
T KOG4162|consen 380 LRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDAL 459 (799)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHH
Confidence 88876654334 33444333344433 46666666666665541 11 11223333333333321 12
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 279 IERAVEVFKNMESMGF-IPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFS 357 (565)
Q Consensus 279 ~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 357 (565)
..++++.+++..+.+. .|++..| +.--|+..++.+.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4567777887776643 3444444 334466778899999999998887656688899988888888999999999888
Q ss_pred HHHhC-CCC------------------CCHHHHHHHHHHHHh------cC-----------------ChHHHHHHHHHH-
Q 008454 358 EMKAT-NVS------------------PNVVTYNTLINGYGQ------VG-----------------NSEMGASLYEEM- 394 (565)
Q Consensus 358 ~m~~~-~~~------------------~~~~~~~~li~~~~~------~g-----------------~~~~A~~~~~~m- 394 (565)
...+. |.. --..|...++..+-. .+ +..+|......+
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 76543 210 001122222222210 00 111111111110
Q ss_pred ---H----HCC---------C--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 395 ---L----RNG---------I--KVD------ILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCV 450 (565)
Q Consensus 395 ---~----~~~---------~--~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (565)
. ..| . .|+ ...|......+.+.+..++|...+.+...... -....|......+..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEV 696 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHH
Confidence 0 001 0 011 12344556667778888888888887776532 256667777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 451 RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAE--VLLEMLEKCMAPDSIILSELYSGLHHCGKDELAM 528 (565)
Q Consensus 451 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 528 (565)
.|..++|.+.|...+... +-+.....++...+.+.|+...|.. ++.++++.+.. +...|..+...+.+.|+.+.|.
T Consensus 697 ~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHH
Confidence 999999999999998764 4456788899999999999888888 99999998544 7889999999999999999999
Q ss_pred HHHHHHHHC
Q 008454 529 KLFRKMEIR 537 (565)
Q Consensus 529 ~~~~~m~~~ 537 (565)
+.|....+.
T Consensus 775 ecf~aa~qL 783 (799)
T KOG4162|consen 775 ECFQAALQL 783 (799)
T ss_pred HHHHHHHhh
Confidence 999977654
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.2e-06 Score=79.02 Aligned_cols=270 Identities=10% Similarity=0.012 Sum_probs=198.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 008454 259 ISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS-VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFN 337 (565)
Q Consensus 259 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 337 (565)
.+-|+.....+...+...|+.++|+..|++....+ |+ ........-.+.+.|+++....+...+.... .-....|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 45678888899999999999999999999887642 22 2222233344567788888888877776542 12344455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 338 TLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEG 417 (565)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 417 (565)
.-........+++.|+.+-++..+.. +.+...|-.-...+...|+.++|.-.|+....... -+...|..|+.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhc
Confidence 55556667788999999998888764 44555666666778889999999999998887532 37789999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 008454 418 KTKKAAYLVKDLDKNSLVPNASTYSALI-TGQC-VRKNSERAFQLYKSMIRSGCRPN-KHIFEMLMSTFCQNEDFDRAAE 494 (565)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 494 (565)
++.+|..+-++..+. +.-+..+...+. ..+. ....-++|.++++..+.. .|+ ....+.+...+...|..+.+..
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHH
Confidence 999998877766543 222555555442 2222 233357888888888765 455 3456777788889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008454 495 VLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 538 (565)
++++.+. ..||....+.|.+.+...+.+++|++.|......+
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999877 46899999999999999999999999998876543
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.1e-07 Score=92.22 Aligned_cols=282 Identities=12% Similarity=0.065 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLIS 306 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 306 (565)
++.....-..-+...+++.+..++++.+.+.. ++....+-.-|.++...|+..+-..+=.++.+.- +-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 44555555566666666666666666665542 3344455555556666666665555555555542 224556666666
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh
Q 008454 307 GHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT--NVSPNVVTYNTLINGYGQVGNS 384 (565)
Q Consensus 307 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~ 384 (565)
-|...|..++|.++|.+...... .-...|-.+...|.-.|..|.|+..+...-+. |.. .-+--+.--|.+.++.
T Consensus 321 YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h---lP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH---LPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc---chHHHHHHHHHHhccH
Confidence 66666666666666666554321 12445666666666666666666666555442 211 1122234445566666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 008454 385 EMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN----SLV--PNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 385 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
+.|.+.|.+..... +-|+.+++.+.-.....+.+.+|..+|+..... +-+ -...+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 66666666666542 225566666666666666666666666655411 000 12334666666666667777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGL 518 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 518 (565)
..++..+... +-+..++..+.-.|...|+++.|...|.+.+- +.|+-.+...++..+
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 7776666653 55666666666666666777777776666654 355555544444443
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.1e-06 Score=83.89 Aligned_cols=401 Identities=14% Similarity=0.078 Sum_probs=229.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHH
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFD 197 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (565)
+++..|++....++... +.+..++..-+-++...++|++|+.+++.-.... ..+.. +-
T Consensus 26 ~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-------------------~~~~~-~f 83 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-------------------VINSF-FF 83 (652)
T ss_pred hHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-------------------hcchh-hH
Confidence 47889998888888754 3566777777888889999999987665432210 00111 11
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
-=+.+..+.++.++|+..++-... .+..+...-...+.+.+++++|+++|+.+.+++.. .+..-+++-+-.
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a- 154 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLA- 154 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHH-
Confidence 223344578899999998883322 23446666778888999999999999999876532 222222221110
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCChhHHHHHHHHHHHCC-------CCCCHH-------HHHHHH
Q 008454 278 IIERAVEVFKNMESMGFIPSVTTYNTL---ISGHCNKGLLSLAMKFKNLMEKNG-------IQPNVI-------TFNTLI 340 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g-------~~~~~~-------~~~~li 340 (565)
...+... +.+......| ..+|..+ ...+...|++.+|+++++...+.+ -.-+.. .-..+.
T Consensus 155 -~~a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 155 -VAAALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred -HHHhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 0111111 1222222233 3344443 345567899999999999884322 111111 122344
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCChH-HHHHHHHHHH--------------------
Q 008454 341 FGFCKKGKLHEANRIFSEMKATNVSPNVVT----YNTLINGYGQVGNSE-MGASLYEEML-------------------- 395 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~-~A~~~~~~m~-------------------- 395 (565)
..+-..|+.++|..++....+.. .+|... -|.|+..-....-++ .++..++...
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56778899999999999998875 455422 222222211111111 0111111000
Q ss_pred ---------------------HC-CCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 396 ---------------------RN-GIKVDILTYNALILGLCK--EGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR 451 (565)
Q Consensus 396 ---------------------~~-~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (565)
.. +..|. ..+..++..+.+ .....++.+++....+....-...+.-.++......
T Consensus 311 ~N~~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 311 RNNALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 00 11111 223333333222 223556666666665543332344555666777889
Q ss_pred CCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH----HHHHHHHHH
Q 008454 452 KNSERAFQLYK--------SMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK--CMAPDS----IILSELYSG 517 (565)
Q Consensus 452 ~~~~~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~----~~~~~li~~ 517 (565)
|+++.|++++. .+.+.+..| .+...++..+.+.++.+.|..++.+.+.. .-.+.. .++..+...
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 99999999998 444444334 44555666677777777777777766542 011112 234444445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCC
Q 008454 518 LHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENG 557 (565)
Q Consensus 518 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 557 (565)
-.+.|+.++|..+++++.+.. .+|..++..++.+++..+
T Consensus 468 ~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 567799999999999998764 567888888888877654
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=5.1e-08 Score=96.98 Aligned_cols=237 Identities=20% Similarity=0.164 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhC-----C--C
Q 008454 299 TTYNTLISGHCNKGLLSLAMKFKNLMEKN-----GI-QPNVITF-NTLIFGFCKKGKLHEANRIFSEMKAT-----N--V 364 (565)
Q Consensus 299 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~ 364 (565)
.+...+...|...|+++.|..+++...+. |. .|...+. +.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666554432 21 1222222 23556777778888888888777542 2 1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC
Q 008454 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN-----GIK-VDI-LTYNALILGLCKEGKTKKAAYLVKDLDKN---SL 434 (565)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~ 434 (565)
+.-..+++.|...|++.|++++|...++...+- +.. +++ ..++.++..++..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112345666667788888888777777665432 111 122 23566777788888888888888765431 11
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 008454 435 VPN----ASTYSALITGQCVRKNSERAFQLYKSMIRS-----G--CRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK- 502 (565)
Q Consensus 435 ~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 502 (565)
.++ ..+++.|...|...|++++|.+++++++.. | ..-....++.+...|.+.+++.+|.++|.+...-
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 347899999999999999999999988864 1 1122456788888899999999998888776432
Q ss_pred ---CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 503 ---CM-APD-SIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 503 ---~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
|. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 21 223 3578999999999999999999888765
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=5.3e-08 Score=96.89 Aligned_cols=238 Identities=21% Similarity=0.176 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-
Q 008454 263 VYTLNMVMHAFCKLGIIERAVEVFKNMESM-----GF-IPSVTT-YNTLISGHCNKGLLSLAMKFKNLMEKN-----GI- 329 (565)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~- 329 (565)
..+...+...|...|+++.|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++..- |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345556777777888888888777766543 21 122222 234667788888999998888887642 21
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 008454 330 -QPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT-----NV-SPNV-VTYNTLINGYGQVGNSEMGASLYEEMLRN---- 397 (565)
Q Consensus 330 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 397 (565)
+.-..+++.|..+|++.|++++|...+++..+- |. .+.+ ..++.++..++..+++++|..++....+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 122456677778899999998888887766431 11 1222 23556777788889999999988876542
Q ss_pred -CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 398 -GIK--VDILTYNALILGLCKEGKTKKAAYLVKDLDKNS----LV--P-NASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 398 -~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~--p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
|.. --..+++.|...|...|++++|.++++.+.... .. + ....++.|...|.+.+++++|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 124578999999999999999999999875421 11 1 2346788888899999999999998876542
Q ss_pred ----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 468 ----GC-RPN-KHIFEMLMSTFCQNEDFDRAAEVLLEML 500 (565)
Q Consensus 468 ----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 500 (565)
|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 21 222 4678999999999999999999988776
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=6.2e-07 Score=83.60 Aligned_cols=304 Identities=11% Similarity=-0.018 Sum_probs=218.8
Q ss_pred HHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 008454 147 LHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLP 226 (565)
Q Consensus 147 ~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 226 (565)
+.+.+..++...|..++-.+..... .+.+......+.+.+...|+.++|+..|++....++.
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~-----------------lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy- 264 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTT-----------------LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD- 264 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhcc-----------------CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-
Confidence 3344445555555555544444322 4557888899999999999999999999999876533
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLIS 306 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 306 (565)
++...-.....+.+.|+.++...+...+.... .-....|..-.......++++.|+.+-++.++.... +...|-.-..
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~ 342 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGR 342 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccH
Confidence 34444445556677888888888888776532 123444555555566788999999999988876432 5556655557
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCh
Q 008454 307 GHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLI-NGYG-QVGNS 384 (565)
Q Consensus 307 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~~-~~g~~ 384 (565)
.+...|+.++|.-.|+..+... +-+...|.-|++.|...|++.+|.-.-+...+. ...+..+...+. ..+. ...--
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 7888999999999999888763 347889999999999999999998777765543 233455555442 2222 22344
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 385 EMGASLYEEMLRNGIKVD-ILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKS 463 (565)
Q Consensus 385 ~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 463 (565)
++|.++++...+. .|+ ....+.+...+...|+.+.+..+++..... .||....+.|...+...+.+++|++.|..
T Consensus 421 EKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 421 EKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 7899999888765 333 445677788888999999999999988764 68999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHH
Q 008454 464 MIRSGCRPNKHIFE 477 (565)
Q Consensus 464 m~~~~~~p~~~~~~ 477 (565)
+++.+ +.|..+..
T Consensus 497 ALr~d-P~~~~sl~ 509 (564)
T KOG1174|consen 497 ALRQD-PKSKRTLR 509 (564)
T ss_pred HHhcC-ccchHHHH
Confidence 98764 33444443
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=2e-07 Score=80.45 Aligned_cols=194 Identities=12% Similarity=0.089 Sum_probs=106.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 337 NTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKE 416 (565)
Q Consensus 337 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (565)
..|.-.|...|++..|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+.|++..+.... +..+.|.....+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 334455566666666666666665543 334455555555566666666666666666554333 445555566666666
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 417 GKTKKAAYLVKDLDKNSLVP-NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEV 495 (565)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 495 (565)
|++++|...|++....-..+ -..+|..+..+..+.|+.+.|.+.|++.++.. +-...+...+.....+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 66666666666655432221 12355555555556666666666666666553 22334445555555566666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 496 LLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
++.....+. ++.......|+.-...|+.+.+-+.=.++
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 655555433 55555555555555566655555544444
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=1.8e-07 Score=89.15 Aligned_cols=217 Identities=12% Similarity=-0.035 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHH
Q 008454 120 YVLSLEFFTWVQTHKPSSL--TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFD 197 (565)
Q Consensus 120 ~~~al~~f~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (565)
.+.++.-+..++...+..+ ....|.....++...|++++|...+++.++. .|.++.+|+
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-------------------~P~~~~a~~ 102 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL-------------------RPDMADAYN 102 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------------------CCCCHHHHH
Confidence 3455555555554333222 2345666777777788888888888777776 455677788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
.+...+...|++++|++.|++..+.... +..+|..+...+...|++++|++.|+...+.. |+..........+...+
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~ 179 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKL 179 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccC
Confidence 8888888888888888888888775533 46677777777777888888888888877653 33222222222233456
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---C---CCCHHHHHHHHHHHHHcCCHHH
Q 008454 278 IIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNG---I---QPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~---~~~~~~~~~li~~~~~~g~~~~ 351 (565)
+.++|.+.+.+..... .++...+ .......|+...+ +.+..+.+.. + +....+|..+...+.+.|++++
T Consensus 180 ~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~ 254 (296)
T PRK11189 180 DPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDE 254 (296)
T ss_pred CHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 7788887776544321 2222211 1222334555443 2344443211 0 0123456667777777777777
Q ss_pred HHHHHHHHHhCC
Q 008454 352 ANRIFSEMKATN 363 (565)
Q Consensus 352 A~~~~~~m~~~~ 363 (565)
|...|++..+.+
T Consensus 255 A~~~~~~Al~~~ 266 (296)
T PRK11189 255 AAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHhC
Confidence 777777776654
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=2.7e-07 Score=79.55 Aligned_cols=197 Identities=13% Similarity=0.028 Sum_probs=116.4
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
...+...+...|++..|..-+++.++. .|.+..+|..+...|-+.|+.+.|.+.|++....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~-------------------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl 98 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH-------------------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL 98 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Confidence 334445555666666666666666665 4445566666666666666666666666666665
Q ss_pred CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008454 223 GFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNR-ISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTY 301 (565)
Q Consensus 223 ~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 301 (565)
... +..+.|.....+|..|++++|...|++....- ..--..+|..+.-+..++|+.+.|.+.|++..+.... ...+.
T Consensus 99 ~p~-~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~ 176 (250)
T COG3063 99 APN-NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPAL 176 (250)
T ss_pred CCC-ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHH
Confidence 433 55666666666666666666666666665431 1112345555555556666666666666666654322 23444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 302 NTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 361 (565)
..+.....+.|++-.|..+++.....+. ++....-..|..--+.|+-+.+.++=..+..
T Consensus 177 l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 177 LELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555666666666666666666665544 5555555556666666666665555544444
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.06 E-value=2.1e-06 Score=84.80 Aligned_cols=202 Identities=11% Similarity=0.020 Sum_probs=122.3
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-cC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL-PI-IESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNM 268 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (565)
..+..|..+...+...|+.+.+.+.+....+.... .+ ..........+...|++++|.+.+++..+.. +.+...+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH
Confidence 34566777777777778888877777766543321 12 2223333445566788888888888877653 223333332
Q ss_pred HHHHHH----HcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 269 VMHAFC----KLGIIERAVEVFKNMESMGFIPS-VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGF 343 (565)
Q Consensus 269 li~~~~----~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 343 (565)
...+. ..+..+.+.+.++.. .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 11222 234445555554441 122233 3334455567777888888888888887764 23456677777788
Q ss_pred HHcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 344 CKKGKLHEANRIFSEMKATNV-SPNV--VTYNTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 344 ~~~g~~~~A~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
...|++++|...+++...... .++. ..|..+...+...|++++|..++++....
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 888888888888887765421 1222 23446667777788888888888877543
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=3.8e-07 Score=86.96 Aligned_cols=216 Identities=12% Similarity=0.024 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008454 243 RVDIALGFYKEMRRNR-ISPN--VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMK 319 (565)
Q Consensus 243 ~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 319 (565)
+.+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++..+.... +...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 4444555555544321 1111 233445555555566666666666655554322 45555556666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008454 320 FKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGI 399 (565)
Q Consensus 320 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 399 (565)
.+++..+... -+..+|..+..++...|++++|++.++...+.. |+..........+...++.++|...|.+.....
T Consensus 120 ~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 6666555421 134455555555556666666666666655542 222111111112233445566666665443321
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 400 KVDILTYNALILGLCKEGKTKKAAYLVKDLDKN---SL--VP-NASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
.++...+ .......|+...+ ..+..+.+. .. .| ....|..+...+.+.|++++|+..|++.++.
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1121111 1122223333322 122222211 00 00 1234555555566666666666666666554
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=3.1e-06 Score=83.66 Aligned_cols=204 Identities=11% Similarity=-0.028 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
....|..+...+...++.+.+...+....+.... ..............+...|++++|.+.+++
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~ 68 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAA----------------RATERERAHVEALSAWIAGDLPKALALLEQ 68 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc----------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455666666666667777766666555544211 111122223334566778999999999999
Q ss_pred HHHCCCCcCHHHHHH---HHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 219 MRDYGFLPIIESCNK---FLSSLLDSERVDIALGFYKEMRRNRISPN-VYTLNMVMHAFCKLGIIERAVEVFKNMESMGF 294 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~---ll~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 294 (565)
..+.... +...+.. ........+..+.+.+.+... ....|+ ......+...+...|++++|.+.+++..+...
T Consensus 69 ~l~~~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p 145 (355)
T cd05804 69 LLDDYPR-DLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP 145 (355)
T ss_pred HHHHCCC-cHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9886533 4444442 112222245555565555541 122233 34555666788899999999999999998753
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 295 IPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGI-QPNV--ITFNTLIFGFCKKGKLHEANRIFSEMKAT 362 (565)
Q Consensus 295 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 362 (565)
. +...+..+..++...|++++|...+++...... .++. ..|..+...+...|++++|..++++....
T Consensus 146 ~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 146 D-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred C-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 3 567788889999999999999999998887532 1232 34556788899999999999999998643
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.4e-05 Score=78.35 Aligned_cols=377 Identities=12% Similarity=0.078 Sum_probs=217.1
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
....|+.|+.+.+.-.... ....-+..-+.++.+.+..++|...+..+-+ .+..+
T Consensus 58 q~~ky~~ALk~ikk~~~~~---~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~----------------------~~~~l 112 (652)
T KOG2376|consen 58 QLDKYEDALKLIKKNGALL---VINSFFFEKAYCEYRLNKLDEALKTLKGLDR----------------------LDDKL 112 (652)
T ss_pred hhhHHHHHHHHHHhcchhh---hcchhhHHHHHHHHHcccHHHHHHHHhcccc----------------------cchHH
Confidence 3457899986665322111 0111112335667788999999998873222 24556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH---HHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLP-IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLN---MVMH 271 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~---~li~ 271 (565)
...-...+.+.|++++|+++|+.+.+.+..- +...-..++.+-. +... +.+......| ..+|. ....
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~~-~~~q~v~~v~-e~syel~yN~Ac 183 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQV-QLLQSVPEVP-EDSYELLYNTAC 183 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhhH-HHHHhccCCC-cchHHHHHHHHH
Confidence 6777889999999999999999998866541 1111111111111 1111 0122222222 22333 3334
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC-------------CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--
Q 008454 272 AFCKLGIIERAVEVFKNMESMG-------------FIPSVTT-YNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVIT-- 335 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g-------------~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-- 335 (565)
.+...|++.+|+++++...+.+ +.-...+ -.-|..++...|+.++|..++...++... +|...
T Consensus 184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~A 262 (652)
T KOG2376|consen 184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLA 262 (652)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHH
Confidence 5567889999999988873211 0101111 12245567778999999998888877643 23211
Q ss_pred --HHHHHHHHHH---------------------------------------------cCCHHHHHHHHHHHHhCCCCCCH
Q 008454 336 --FNTLIFGFCK---------------------------------------------KGKLHEANRIFSEMKATNVSPNV 368 (565)
Q Consensus 336 --~~~li~~~~~---------------------------------------------~g~~~~A~~~~~~m~~~~~~~~~ 368 (565)
-|.++..-.. .+..+.+.++-... .+..|.
T Consensus 263 v~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l--p~~~p~- 339 (652)
T KOG2376|consen 263 VAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL--PGMSPE- 339 (652)
T ss_pred HHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC--CccCch-
Confidence 1222111000 00001111111000 011222
Q ss_pred HHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhCCCCCCH
Q 008454 369 VTYNTLINGYGQ--VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVK--------DLDKNSLVPNA 438 (565)
Q Consensus 369 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~ 438 (565)
..+.+++..+.+ ...+.++..++....+....-...+.-.++......|+++.|.+++. .+.+.+..|-
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~- 418 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG- 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh-
Confidence 334444443332 22466777777777766444345677778888899999999999999 5555555444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 439 STYSALITGQCVRKNSERAFQLYKSMIRS--GCRPN----KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILS 512 (565)
Q Consensus 439 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (565)
+...+...+.+.++-+.|..++.+.+.. .-.+. ..++..+...-.+.|+.++|..+++++.+. .++|..+..
T Consensus 419 -~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~ 496 (652)
T KOG2376|consen 419 -TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLV 496 (652)
T ss_pred -HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHH
Confidence 4455666677777777777777777642 00111 123444444456789999999999999986 467889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 008454 513 ELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 513 ~li~~~~~~g~~~~A~~~~~~m 534 (565)
.++.+|++. +.+.|..+-+.+
T Consensus 497 ~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 497 QLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhc-CHHHHHHHhhcC
Confidence 999999885 677777766554
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.6e-06 Score=83.82 Aligned_cols=405 Identities=10% Similarity=0.014 Sum_probs=245.5
Q ss_pred HHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCC
Q 008454 112 VLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDS 191 (565)
Q Consensus 112 ~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (565)
....-.+|+..|+..|..++.-.| ++...|..-..+++..+++++|.+=-.+.++. +|.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l-------------------~p~ 68 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL-------------------NPD 68 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc-------------------CCc
Confidence 344567899999999999988766 46677889999999999999998877777666 666
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHH---HHHHHHHHHC---CCCCCHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIA---LGFYKEMRRN---RISPNVYT 265 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A---~~~~~~m~~~---~~~p~~~~ 265 (565)
.+..|.....++.-.|++++|+..|.+-++.... +...++-+..++.......+. -.++..+... ........
T Consensus 69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 7889999999999999999999999999887643 556666666666211000000 0011111000 00001112
Q ss_pred HHHHHHHHHHc-------CCHHHHHHHHHHHHh--------C-------CCCC----------------------CHHHH
Q 008454 266 LNMVMHAFCKL-------GIIERAVEVFKNMES--------M-------GFIP----------------------SVTTY 301 (565)
Q Consensus 266 ~~~li~~~~~~-------g~~~~a~~~~~~m~~--------~-------g~~p----------------------~~~~~ 301 (565)
|..++..+-+. .......+....+.. . +..| -..-.
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 22222221110 011111111111110 0 0111 01123
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------H
Q 008454 302 NTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNT-------L 374 (565)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------l 374 (565)
..+..+..+..+++.+.+-+....... -+..-++....+|...|.+.++...-+...+.|- -...-|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 445666667777788887777777654 3555556666778888877777766666555441 11222222 3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008454 375 INGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNS 454 (565)
Q Consensus 375 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 454 (565)
..+|.+.++++.++..|.+.......|+. ..+....+++....+.....+... ..--..-...+.+.|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 33555667778888888876655444332 122333444444444433322221 11112225667788999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 455 ERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 455 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
..|++.|.+++... +-|...|....-+|.+.|.+..|+.-.+..++.+ ++....|.-=..++....+++.|.+.|.+-
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 6677888888889999999999988887777752 222334444455666667888888888888
Q ss_pred HHCCCCCCHhhHHHHHhhccc
Q 008454 535 EIRGLLPKGFDKLRTINCAPE 555 (565)
Q Consensus 535 ~~~g~~p~~~~~~~ll~~~~~ 555 (565)
.+.+ |+...+...++-|..
T Consensus 453 le~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 453 LELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HhcC--chhHHHHHHHHHHHH
Confidence 7765 676666666655554
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=4.1e-07 Score=83.03 Aligned_cols=391 Identities=14% Similarity=0.132 Sum_probs=220.0
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
.-+||+.|+..+..+.... .++.+..-.++-+..-.|.+.+|..+-.+..+. +.-
T Consensus 69 hLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-----------------------pL~ 123 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT-----------------------PLC 123 (557)
T ss_pred hhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-----------------------hHH
Confidence 3479999999999887743 345666666777777789999998887665443 223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM-HAFC 274 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~ 274 (565)
-..|+..-.+.++-++-..+-+.+.+ ..+---++.......-.+++|+++|......+ |+-...|..+ -+|.
T Consensus 124 ~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyy 196 (557)
T KOG3785|consen 124 IRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYY 196 (557)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHH
Confidence 33333444444444444443333332 11222223333333334555555555554431 2333333222 2333
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------------------------HHhc-----CChhHHHH
Q 008454 275 KLGIIERAVEVFKNMESMGFIPSVTTYNTLISG------------------------------HCNK-----GLLSLAMK 319 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~------------------------------~~~~-----g~~~~a~~ 319 (565)
+..-++-+.++++-..+. ++-+....|..... .++. ..-+.|++
T Consensus 197 KlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALq 275 (557)
T KOG3785|consen 197 KLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQ 275 (557)
T ss_pred hcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHH
Confidence 444445555554444332 11122222222222 2221 12234444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------ChHHHHHHHH
Q 008454 320 FKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVG-------NSEMGASLYE 392 (565)
Q Consensus 320 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~ 392 (565)
++--+.+. -+.+-..|+--|.+.++..+|..+.+++.- .++.-|-.-.-.+...| ...-|.+.|.
T Consensus 276 VLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 276 VLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred hchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence 44433332 122334556678899999999998877642 23333322222233333 3445555665
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008454 393 EMLRNGIKVDI-LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRP 471 (565)
Q Consensus 393 ~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 471 (565)
-.-+.+..-|. .--..+..++.-..++++++..+..+...-..-|...|| +.++++..|++.+|.++|-.+....++.
T Consensus 348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn 426 (557)
T KOG3785|consen 348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKN 426 (557)
T ss_pred HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhh
Confidence 55444443332 223456666677778999999999888765554554444 6788999999999999998877554443
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 008454 472 NKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSII-LSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTI 550 (565)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 550 (565)
+..-...|..+|.+++..+.|..++-++ +-..+... ...+..-|.+++.+--|.+.|+.+... .|+...|..--
T Consensus 427 ~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeGKR 501 (557)
T KOG3785|consen 427 KILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEGKR 501 (557)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCCcc
Confidence 3333456677889999999997766443 33334443 445567888999999999999998655 46665554433
Q ss_pred hhc
Q 008454 551 NCA 553 (565)
Q Consensus 551 ~~~ 553 (565)
-+|
T Consensus 502 GAC 504 (557)
T KOG3785|consen 502 GAC 504 (557)
T ss_pred chH
Confidence 333
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=6.9e-07 Score=79.73 Aligned_cols=291 Identities=14% Similarity=0.134 Sum_probs=186.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLN-MVMHAFC 274 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~ 274 (565)
|++++..+.+..++.+|++++..-.++..+ +......+..+|....++..|-+.|+++-.. .|...-|. .-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 566677777888889999888888777643 6677778888888888888888888888664 34443332 2334566
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 275 KLGIIERAVEVFKNMESMGFIPSVTTYNTLI--SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 352 (565)
+.+.+.+|+++...|.+. ++...-..-+ ......+++..+..++++....| +..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 778888888888888753 2221111111 22345677777887777766432 445555555666788888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-------------CHH---------------
Q 008454 353 NRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKV-------------DIL--------------- 404 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-------------~~~--------------- 404 (565)
.+-|+...+-+---....|+..+. ..+.|+++.|+++..+++++|++- |+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 888888877543444566765554 456788888888888888776531 211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKN-SLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
.+|.-...+.+.|+++.|.+.+-.|.-+ .-..|++|...+.-.- ..+++-+..+-+.-+++.+ +-...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 1222233445778888888888777422 1223555554433221 2344445555555555544 34457788888888
Q ss_pred HhcCCHHHHHHHHHH
Q 008454 484 CQNEDFDRAAEVLLE 498 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~ 498 (565)
|++.-++.|..++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 888888888777644
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=1.4e-05 Score=89.47 Aligned_cols=337 Identities=11% Similarity=-0.030 Sum_probs=205.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC------CCC--HHHHHHHHHH
Q 008454 201 KTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI------SPN--VYTLNMVMHA 272 (565)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~------~p~--~~~~~~li~~ 272 (565)
..+...|++..+..+++.+.......+..........+...|+++++..++....+.-- .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34556677777777776653221111222333444555677899999888887654210 111 1122223344
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFIPS----VTTYNTLISGHCNKGLLSLAMKFKNLMEKN----GIQ-PNVITFNTLIFGF 343 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~ 343 (565)
+...|++++|...+++..+.-...+ ....+.+...+...|++++|...+++.... |.. ....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 5678999999999988765311112 133455666777899999999888877642 111 1123445566778
Q ss_pred HHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHH
Q 008454 344 CKKGKLHEANRIFSEMKAT----NVS--P-NVVTYNTLINGYGQVGNSEMGASLYEEMLRN----GIKVDILTYNALILG 412 (565)
Q Consensus 344 ~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~ 412 (565)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999988876542 211 1 1233445566677789999999888877553 111123344556667
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVP-NASTY-----SALITGQCVRKNSERAFQLYKSMIRSGCRPN---KHIFEMLMSTF 483 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~-----~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~ 483 (565)
+...|+.++|...+..+....... ....+ ...+..+...|+.+.|...+........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 788999999998888774421100 11111 1122334557888888888777554221111 11134566677
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 484 CQNEDFDRAAEVLLEMLEK----CMAPD-SIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
...|++++|...++++... |...+ ..++..+..++.+.|+.++|...+.+..+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999887653 22222 235666777888999999999998888755
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.95 E-value=1.7e-05 Score=80.05 Aligned_cols=375 Identities=13% Similarity=0.004 Sum_probs=247.5
Q ss_pred ChHHHHHHH--HhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHH
Q 008454 105 TPFRVKHVL--LKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSI 182 (565)
Q Consensus 105 ~~~~~~~~l--~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~ 182 (565)
++....++. +.+.+++..+-+.|+.+..-. -...+.|..+...+...|.-..|..+++.......
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~----------- 388 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE----------- 388 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc-----------
Confidence 344444432 455678888888998776532 24678899999999999999999999988776521
Q ss_pred HHhcccCCCChHHHHHHHHHHHh-cCChHHHHHHHHHHHHC--CCC--cCHHHHHHHHHHHHcC-----------CChHH
Q 008454 183 LYSYRMCDSSPLVFDLLFKTYAH-RKKFRNATDTFCQMRDY--GFL--PIIESCNKFLSSLLDS-----------ERVDI 246 (565)
Q Consensus 183 ~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~--~~~--p~~~~~~~ll~~~~~~-----------~~~~~ 246 (565)
.++++..+-..-+.|.+ .|.++++++.-.++... +.. .....|..+.-+|... ....+
T Consensus 389 ------~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 389 ------QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred ------CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 23344444344444443 46677777766666551 111 1344555555554321 12446
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008454 247 ALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEK 326 (565)
Q Consensus 247 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 326 (565)
+++.+++..+.+.. |......+.--|+..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+....
T Consensus 463 slqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 463 SLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 78888888776533 22333334445678889999999999999886666899999999999999999999998886654
Q ss_pred C-CCC------------------CCHHHHHHHHHHHHH---------cC--------------CHHHHHHHHHHHH----
Q 008454 327 N-GIQ------------------PNVITFNTLIFGFCK---------KG--------------KLHEANRIFSEMK---- 360 (565)
Q Consensus 327 ~-g~~------------------~~~~~~~~li~~~~~---------~g--------------~~~~A~~~~~~m~---- 360 (565)
. |.. ....|...++..+-. .| +..+|.+....+.
T Consensus 542 E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 542 EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 2 210 001122222222110 00 1111111111100
Q ss_pred ----hCC---------CC--CC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 361 ----ATN---------VS--PN------VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKT 419 (565)
Q Consensus 361 ----~~~---------~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 419 (565)
..| +. |+ ...|......+.+.+..++|...+.+..+.. ......|......+...|..
T Consensus 622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhh
Confidence 000 00 11 1224445566677788888887777776653 34677888888888999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008454 420 KKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQ--LYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLL 497 (565)
Q Consensus 420 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 497 (565)
++|...|......+.. ++....++...+.+.|+..-|.. ++.++++.+ +-+...|..+...+.+.|+.+.|.+.|+
T Consensus 701 ~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 9999999998876543 56688899999999999888888 999999987 6788999999999999999999999999
Q ss_pred HHHHc
Q 008454 498 EMLEK 502 (565)
Q Consensus 498 ~~~~~ 502 (565)
...+.
T Consensus 779 aa~qL 783 (799)
T KOG4162|consen 779 AALQL 783 (799)
T ss_pred HHHhh
Confidence 88765
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.7e-06 Score=77.28 Aligned_cols=291 Identities=15% Similarity=0.112 Sum_probs=186.6
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
+...+.-+.+..++.+|.+++....+. .+.+......|..+|....++..|-+.|+++...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er-------------------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql 73 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER-------------------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL 73 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc-------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556677778889999999999887776 3446667888999999999999999999999774
Q ss_pred CCCcCHHHHHH-HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008454 223 GFLPIIESCNK-FLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA--FCKLGIIERAVEVFKNMESMGFIPSVT 299 (565)
Q Consensus 223 ~~~p~~~~~~~-ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~ 299 (565)
- |...-|.. -...+.+.+.+.+|+.+...|... ++...-..-+.+ ....+|+..+..++++....| +..
T Consensus 74 ~--P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad 145 (459)
T KOG4340|consen 74 H--PELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EAD 145 (459)
T ss_pred C--hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccc
Confidence 4 54444433 357778889999999999888643 222211111222 224677778888887776432 444
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-------------C
Q 008454 300 TYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVS-------------P 366 (565)
Q Consensus 300 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------~ 366 (565)
+.+.......+.|+++.|.+-|+...+-|---....|+..+ +..+.|+++.|+++..++.++|+. +
T Consensus 146 ~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi 224 (459)
T KOG4340|consen 146 GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI 224 (459)
T ss_pred hhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence 55555555667888888888888776654333455666544 445667888888888888776532 1
Q ss_pred CH---------------HHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 367 NV---------------VTYNTLINGYGQVGNSEMGASLYEEMLRN-GIKVDILTYNALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 367 ~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
|. ..+|.-...+.+.|+++.|.+.+-+|.-+ ....|+.|...+.-.-. .+++.+..+-+.-+.
T Consensus 225 DvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 225 DVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLL 303 (459)
T ss_pred chhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHH
Confidence 21 11222223345677888888777777532 23446666554433222 233444444444444
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 431 KNSLVPNASTYSALITGQCVRKNSERAFQLYKS 463 (565)
Q Consensus 431 ~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 463 (565)
+.+.- ...||..++-.||++.-++.|-+++.+
T Consensus 304 ~~nPf-P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 304 QQNPF-PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 44443 345777777778888777777776654
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=1.1e-07 Score=89.19 Aligned_cols=252 Identities=13% Similarity=0.089 Sum_probs=150.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGII 279 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 279 (565)
++-+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++... -.|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccch
Confidence 345566788888887666 333332234555666778888888877544 333333 256666665555444433444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 280 ERAVEVFKNMESMGFIPSVTTYN-TLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSE 358 (565)
Q Consensus 280 ~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 358 (565)
+.++.-+++....+...+..++. .....+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555554443333222222332 2334566678888888877642 3566777778888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 359 MKATNVSPNVVTYNTLINGYGQ----VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL 434 (565)
Q Consensus 359 m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (565)
|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+.
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 87653 23344444444432 23678888888887654 456777788888888888888888888888776554
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 008454 435 VPNASTYSALITGQCVRKNS-ERAFQLYKSMIRS 467 (565)
Q Consensus 435 ~p~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~ 467 (565)
. +..+...++.+....|+. +.+.+++.++...
T Consensus 233 ~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 N-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred C-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3 555666666666666665 5566677776654
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=4.2e-05 Score=77.69 Aligned_cols=385 Identities=16% Similarity=0.166 Sum_probs=215.3
Q ss_pred cCCChhHHhhhccCCChHHHHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 008454 90 IHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDS 169 (565)
Q Consensus 90 ~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~ 169 (565)
+...|+.+.+....-....|..|-+-.-++...|. ..+.+++.. + +.-...+-.....|..++|..++++..+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaR-AlR~a~q~~----~-e~eakvAvLAieLgMlEeA~~lYr~ckR- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGAR-ALRRAQQNG----E-EDEAKVAVLAIELGMLEEALILYRQCKR- 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHH-HHHHHHhCC----c-chhhHHHHHHHHHhhHHHHHHHHHHHHH-
Confidence 34567666665443333333333222222222232 233444322 1 2223334444577888999988887655
Q ss_pred CCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHH
Q 008454 170 DSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALG 249 (565)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~ 249 (565)
|+.|=+.|-..|.|++|+++-+.-.+-. --.+|......+...++.+.|++
T Consensus 829 --------------------------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 829 --------------------------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred --------------------------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHH
Confidence 3345566667788888888766543322 23456666666777777777777
Q ss_pred HHHHH----------HHCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 250 FYKEM----------RRNR---------ISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCN 310 (565)
Q Consensus 250 ~~~~m----------~~~~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 310 (565)
.|++. .... -..|...|......+-..|+.+.|+.+|....+ |-.+++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 77652 1110 012334444444455567888888888876653 5567777888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------
Q 008454 311 KGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQ---------- 380 (565)
Q Consensus 311 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---------- 380 (565)
.|+.++|-++-++-. |..+...+...|-..|++.+|...|.+... |...|+.|-.
T Consensus 951 qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred ccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHH
Confidence 888888888766532 556666788888888999999888877653 2233332211
Q ss_pred ---c--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHhCC--CCCCHHHHHHHH
Q 008454 381 ---V--GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKD--------LDKNS--LVPNASTYSALI 445 (565)
Q Consensus 381 ---~--g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~~--~~p~~~~~~~li 445 (565)
. .+.-.|-++|++.- .. +...+..|-+.|.+.+|+++--+ ++..+ ..-|+...+...
T Consensus 1016 al~s~~~d~v~aArYyEe~g---~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELG---GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HhhcCchhHHHHHHHHHHcc---hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 1 12223333443321 11 12344556777777777665322 12222 233566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCH----HHHHHHHHHHHh
Q 008454 446 TGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEML-EKCMAPDS----IILSELYSGLHH 520 (565)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~p~~----~~~~~li~~~~~ 520 (565)
.-++...++++|..++-...+ |...+. +|+..+..-..++-+.|. .++-.|+. .++..+...|.+
T Consensus 1088 dFF~~~~qyekAV~lL~~ar~---------~~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLARE---------FSGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHHH---------HHHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 777778888888877766543 222222 233444333333333332 11122333 356667778888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCCCccC
Q 008454 521 CGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEKES 561 (565)
Q Consensus 521 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 561 (565)
+|.+..|-+=|-+.-+ ....+++..++||.++
T Consensus 1158 QG~Yh~AtKKfTQAGd---------Kl~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQAGD---------KLSAMRALLKSGDTQK 1189 (1416)
T ss_pred ccchHHHHHHHhhhhh---------HHHHHHHHHhcCCcce
Confidence 8888888776655422 2345666777777664
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=4.8e-05 Score=85.24 Aligned_cols=309 Identities=11% Similarity=0.030 Sum_probs=200.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC------CcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH---
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGF------LPI--IESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNV--- 263 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~--- 263 (565)
........+...|++++|...++...+.-. .+. ......+...+...|++++|...+++..+.-...+.
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 334445566778999999999988754311 111 122233345566789999999999998763211222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC--C
Q 008454 264 -YTLNMVMHAFCKLGIIERAVEVFKNMESM----GFI-PSVTTYNTLISGHCNKGLLSLAMKFKNLMEK----NGIQ--P 331 (565)
Q Consensus 264 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~--~ 331 (565)
...+.+...+...|++++|...+++.... |.. ....++..+...+...|++++|...+++... .|.. +
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 24455666778899999999999887643 111 1123455567788899999999998887654 2221 1
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHH
Q 008454 332 -NVITFNTLIFGFCKKGKLHEANRIFSEMKATN--VSP--NVVTYNTLINGYGQVGNSEMGASLYEEMLRNG--IKVDIL 404 (565)
Q Consensus 332 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~ 404 (565)
....+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+.+.|...+....... ......
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 22334555667788899999999998875531 111 23344456667788999999999998875421 111110
Q ss_pred --HH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-
Q 008454 405 --TY--NALILGLCKEGKTKKAAYLVKDLDKNSLVPNA---STYSALITGQCVRKNSERAFQLYKSMIRS----GCRPN- 472 (565)
Q Consensus 405 --~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~- 472 (565)
.. ...+..+...|+.+.|..++............ ..+..+..++...|+.++|...+.+.... |...+
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 11 11224455688999999998776542211111 12345667788899999999999988763 32221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 473 KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC 503 (565)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 503 (565)
..+...+..++.+.|+.++|...+.++.+..
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2456667778889999999999999998764
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.83 E-value=8.9e-05 Score=67.95 Aligned_cols=302 Identities=11% Similarity=0.019 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
.+-..-+...+...|++.+|+.-+...++. .+.+-.++..-...|...|+...|+.-+.+.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~-------------------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG-------------------DPNNYQAIFRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC-------------------CchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence 334444555555666666666666555544 1111122222334555566666666666666
Q ss_pred HHCCCCcCHHH-HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC--HHH------------HHHHHHHHHHcCCHHHHHH
Q 008454 220 RDYGFLPIIES-CNKFLSSLLDSERVDIALGFYKEMRRNRISPN--VYT------------LNMVMHAFCKLGIIERAVE 284 (565)
Q Consensus 220 ~~~~~~p~~~~-~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~------------~~~li~~~~~~g~~~~a~~ 284 (565)
.+. +||... --.-...+.+.|.++.|..-|+.+++....-+ ... ....+..+...|+...|+.
T Consensus 99 lel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 99 LEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred Hhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 553 244322 12223445566666666666666655422100 011 1122333445567777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 285 VFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364 (565)
Q Consensus 285 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 364 (565)
....+.+..+ -|...|..-..+|...|++..|+.-++...+..- -+..++--+-..+...|+.+.++..+++..+.
T Consensus 177 ~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-- 252 (504)
T KOG0624|consen 177 MITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL-- 252 (504)
T ss_pred HHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--
Confidence 7777666532 2666666666777777777777666555554432 24555555666666777777777777666654
Q ss_pred CCCHHH----HHHH---------HHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 365 SPNVVT----YNTL---------INGYGQVGNSEMGASLYEEMLRNGIKVDI---LTYNALILGLCKEGKTKKAAYLVKD 428 (565)
Q Consensus 365 ~~~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~ 428 (565)
.||.-. |..+ +......+++.++.+-.+...+....... ..+..+..++...|++.+|+..-.+
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 333321 1111 11223445555555555555554332111 2233444555556666667666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 429 LDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 429 ~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
+.+.... |+.++.--..+|.-...++.|+.-|+.+.+.
T Consensus 333 vL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 333 VLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6653211 3555555566666666666666666666654
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=3.4e-05 Score=79.98 Aligned_cols=285 Identities=11% Similarity=0.086 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 141 ETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMR 220 (565)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 220 (565)
..|....+.+.+..+.+-..+++.+ . -+.-+.+.|+++.+--....+|.--...++++...+-+.+-+++++++.
T Consensus 937 SlfK~~aRYlv~R~D~~LW~~VL~e---~--n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIv 1011 (1666)
T KOG0985|consen 937 SLFKSQARYLVERSDPDLWAKVLNE---E--NPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIV 1011 (1666)
T ss_pred hHHHHHHHHHHhccChHHHHHHHhc---c--ChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 3566667777777776655444432 1 1223567777777654455678888889999999999999999999986
Q ss_pred HCCC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------
Q 008454 221 DYGF--LPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM------ 292 (565)
Q Consensus 221 ~~~~--~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------ 292 (565)
-.+- .-+...-|.++-...+.. ...+.+..+++...+. |+ +...+...+-+++|..+|++....
T Consensus 1012 L~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~V 1083 (1666)
T KOG0985|consen 1012 LDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQV 1083 (1666)
T ss_pred cCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHH
Confidence 4321 112333444544444433 3344455555433211 11 112223334445555555443210
Q ss_pred ----------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008454 293 ----------------GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIF 356 (565)
Q Consensus 293 ----------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 356 (565)
.+ -....|..+..+-.+.|...+|.+-|-+. -|+..|..+++...+.|.|++-.+++
T Consensus 1084 Lie~i~~ldRA~efAe~~-n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1084 LIENIGSLDRAYEFAERC-NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HHHHhhhHHHHHHHHHhh-CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 00 13344555555555666655555444321 24556666666666667776666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 357 SEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVP 436 (565)
Q Consensus 357 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 436 (565)
...++..-.|... +.||-+|++.++..+..+.+ .-|+......+.+-|...|.++.|.-++.
T Consensus 1157 ~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------- 1218 (1666)
T KOG0985|consen 1157 LMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS--------- 1218 (1666)
T ss_pred HHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------
Confidence 6555544333332 35566666666655544332 13455555666666666666666665555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 437 NASTYSALITGQCVRKNSERAFQLYKS 463 (565)
Q Consensus 437 ~~~~~~~li~~~~~~~~~~~A~~~~~~ 463 (565)
+...|..|...+...|+++.|.+.-++
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444577777777777777776654443
No 96
>PLN02789 farnesyltranstransferase
Probab=98.78 E-value=1.3e-05 Score=76.41 Aligned_cols=214 Identities=14% Similarity=0.103 Sum_probs=142.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSE-RVDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 274 (565)
++.+-..+...++.++|+.+.+++.+.+.. +..+|+.....+...| .+++++..++++.+...+ +..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 333444445557888888888888886643 5667777767777777 578888888888776433 5556665544455
Q ss_pred HcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCH
Q 008454 275 KLGII--ERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKK---GKL 349 (565)
Q Consensus 275 ~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~ 349 (565)
+.|+. ++++.+++++.+...+ |..+|+...-++.+.|+++++++.++++++.+.. |..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 55653 6678888888776544 7788888888888888888888888888887644 666776666555544 222
Q ss_pred ----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 350 ----HEANRIFSEMKATNVSPNVVTYNTLINGYGQV----GNSEMGASLYEEMLRNGIKVDILTYNALILGLCK 415 (565)
Q Consensus 350 ----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (565)
++.++...++.... +-|...|+.+...+... +...+|...+.+..+.++. +......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 45666665665543 45666777776666652 3345577777776654432 56666777777764
No 97
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=0.00015 Score=75.46 Aligned_cols=355 Identities=13% Similarity=0.088 Sum_probs=175.7
Q ss_pred CCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhc-CCCCCcHHHHHHHHHhcccCCCC----------hHHHHHHHHHHHh
Q 008454 137 SLTLETHSIVLHILTKNRKFKSSESILRGILDS-DSFDLPSKLFDSILYSYRMCDSS----------PLVFDLLFKTYAH 205 (565)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~li~~~~~ 205 (565)
..+++.-...+.++-..+-..+..+++++++-. ..+...+.+-+-++-+.-...++ ..--..+......
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhh
Confidence 345566666666666666667777777666533 23333333333322221111110 0001123344455
Q ss_pred cCChHHHHHHHHHHHHCC---------------------CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 008454 206 RKKFRNATDTFCQMRDYG---------------------FLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVY 264 (565)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~---------------------~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 264 (565)
++-+++|..+|++..-.+ -.-....|..+..+-.+.|.+.+|++-|-+. .|..
T Consensus 1061 ~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps 1134 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPS 1134 (1666)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcH
Confidence 555666666665543200 0012334444555555555555554444221 1344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFC 344 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 344 (565)
.|..++....+.|.+++-.+.+....+..-+|.+.+ .|+-+|++.++..+..+++. .||......+.+-|.
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf 1205 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCF 1205 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHh
Confidence 455555555555555555555544444433333332 34445555555444333221 244444444445555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 345 KKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 345 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (565)
..|.++.|.-+|... ..|..|...+...|+++.|.+.-++. -+..+|..+..+|...+.+.-|
T Consensus 1206 ~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-- 1268 (1666)
T KOG0985|consen 1206 EEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-- 1268 (1666)
T ss_pred hhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH--
Confidence 555555544444322 23445555555556665555433322 2456666666666655544333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C
Q 008454 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK-C 503 (565)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~ 503 (565)
+|-..++.....-...++..|-.+|-+++.+.+++..+... ......|+.|.-.|.+- ++++..+.++-.-.+ +
T Consensus 1269 ---QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvN 1343 (1666)
T KOG0985|consen 1269 ---QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVN 1343 (1666)
T ss_pred ---HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcc
Confidence 33333344455567788888888999998888888766432 34456677777666654 344444444333222 1
Q ss_pred CC------CCHHHHHHHHHHHHhcCCHHHHH
Q 008454 504 MA------PDSIILSELYSGLHHCGKDELAM 528 (565)
Q Consensus 504 ~~------p~~~~~~~li~~~~~~g~~~~A~ 528 (565)
++ -....|+.+.-.|.+-..+|.|.
T Consensus 1344 ipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1344 IPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 11 12245667766676666666553
No 98
>PLN02789 farnesyltranstransferase
Probab=98.78 E-value=1.2e-05 Score=76.54 Aligned_cols=209 Identities=10% Similarity=0.002 Sum_probs=155.2
Q ss_pred HHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCc
Q 008454 148 HILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRK-KFRNATDTFCQMRDYGFLP 226 (565)
Q Consensus 148 ~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p 226 (565)
.++...+..++|+.+..++++. .|.+..+|+....++...| ++++++..++++.+.+.+
T Consensus 45 a~l~~~e~serAL~lt~~aI~l-------------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk- 104 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL-------------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK- 104 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH-------------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-
Confidence 3445567788888888888876 4445566766666777777 689999999999987765
Q ss_pred CHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 227 IIESCNKFLSSLLDSERV--DIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTL 304 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 304 (565)
+..+|+...-.+.+.|+. ++++.+++.+.+... -|..+|+...-++...|+++++++.++++++.+.. |..+|+..
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R 182 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQR 182 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHH
Confidence 677788776666666653 678999999987653 47889998888888999999999999999988765 77788777
Q ss_pred HHHHHhc---CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008454 305 ISGHCNK---GLL----SLAMKFKNLMEKNGIQPNVITFNTLIFGFCKK----GKLHEANRIFSEMKATNVSPNVVTYNT 373 (565)
Q Consensus 305 i~~~~~~---g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~ 373 (565)
...+.+. |.. ++.+.+...++... +-|...|+-+...+... +...+|.+.+.+..+.+ ..+......
T Consensus 183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~ 260 (320)
T PLN02789 183 YFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSD 260 (320)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHH
Confidence 6666554 222 46677776776654 34778888887777763 44567888888876654 456677778
Q ss_pred HHHHHHh
Q 008454 374 LINGYGQ 380 (565)
Q Consensus 374 li~~~~~ 380 (565)
|+..|+.
T Consensus 261 l~d~~~~ 267 (320)
T PLN02789 261 LLDLLCE 267 (320)
T ss_pred HHHHHHh
Confidence 8888875
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=3.4e-07 Score=85.97 Aligned_cols=250 Identities=9% Similarity=0.047 Sum_probs=114.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 008454 236 SSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLS 315 (565)
Q Consensus 236 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 315 (565)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33444566666665444 222211122334455566666666655432 2332222 445444444433332223333
Q ss_pred HHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 316 LAMKFKNLMEKNGIQPNVITF-NTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEM 394 (565)
Q Consensus 316 ~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 394 (565)
.+..-++.....+...+..++ ......+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333322222212111122 22223444556666666665432 23445555666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008454 395 LRNGIKVDILTYNALILGLCK----EGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCR 470 (565)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 470 (565)
.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.. +
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 5532 12 233333333332 22466666666665543 33455566666666666666666666666665543 3
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 008454 471 PNKHIFEMLMSTFCQNEDF-DRAAEVLLEMLE 501 (565)
Q Consensus 471 p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~ 501 (565)
-+..+...++.+....|+. +.+.+++.++..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3444555555555555555 445555555554
No 100
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.76 E-value=0.00015 Score=70.48 Aligned_cols=127 Identities=15% Similarity=0.198 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVP-NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
|..+++...+..-+..|..+|.++.+.+..+ ++..+++++.-+| .++.+-|.++|+--+.+ +.-+..--...+.-+.
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLS 446 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHH
Confidence 3444444444444445555555554444433 3334444444332 33444455555444333 1112222233344444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 485 QNEDFDRAAEVLLEMLEKCMAPDS--IILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
..++-..|..+|++.+..++.+|. .+|..++.--..-|+...+.++-+++
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 444444555555555444333332 34555555444555555555554444
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=8.3e-05 Score=68.16 Aligned_cols=301 Identities=13% Similarity=0.015 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTL-NMVMHA 272 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~ 272 (565)
.-.--+...+...|++.+|+.-|....+.+.. +-.++..-...|...|+...|+.-+...++. +||-..- -.-...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 33445677777888888888888888774422 3334444456777788888888888887764 5664322 122334
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHH------------HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFIP--SVTTYNT------------LISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNT 338 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~------------li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 338 (565)
+.++|.+++|..-|+.+.+....- ....+.. .+..+.-.|+...|+.....+.+-. +-|...|..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 667888888888888888763221 1111111 2233445677777777777776653 346666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----HHH-----
Q 008454 339 LIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTY----NAL----- 409 (565)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~l----- 409 (565)
-..+|...|++..|+.-++...+.. .-+..++.-+-..++..|+.+.++...++..+. .||.... ..|
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHH
Confidence 6777777777777776666655543 334555556666677777777777777777664 3443322 111
Q ss_pred ----HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 410 ----ILGLCKEGKTKKAAYLVKDLDKNSLVPNAS---TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMST 482 (565)
Q Consensus 410 ----i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 482 (565)
+......+++.++..-.+...+........ .+..+-.++...+++.+|++.-.+.++.. +-|..++---..+
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHH
Confidence 112233455555555555555543321122 23334445555666677776666666542 2235666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 008454 483 FCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~ 502 (565)
|.-...++.|+.-|+.+.+.
T Consensus 351 ~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhc
Confidence 66666677777777666664
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.72 E-value=0.00035 Score=68.14 Aligned_cols=400 Identities=13% Similarity=0.120 Sum_probs=212.8
Q ss_pred CCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 008454 137 SLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTF 216 (565)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 216 (565)
+.+..+|..++.-+.-. ..+++++.+++++.. .+..+..|..-|+.-...++++....+|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-------------------FP~s~r~W~~yi~~El~skdfe~VEkLF 76 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-------------------FPSSPRAWKLYIERELASKDFESVEKLF 76 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-------------------CCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35778888888876554 888888888888776 5667788888888888888888888888
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHcCC-Ch----HHHHHHHHHH-HHCCCCCC-HHHHHHHHHH---------HHHcCCHH
Q 008454 217 CQMRDYGFLPIIESCNKFLSSLLDSE-RV----DIALGFYKEM-RRNRISPN-VYTLNMVMHA---------FCKLGIIE 280 (565)
Q Consensus 217 ~~~~~~~~~p~~~~~~~ll~~~~~~~-~~----~~A~~~~~~m-~~~~~~p~-~~~~~~li~~---------~~~~g~~~ 280 (565)
.+.+..- .+...|...+..-.+.+ .. +...+.|+-. .+.|+.+- -..|+..+.. |..+.+++
T Consensus 77 ~RCLvkv--LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~ 154 (656)
T KOG1914|consen 77 SRCLVKV--LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRIT 154 (656)
T ss_pred HHHHHHH--hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHH
Confidence 8877644 24666666665544332 11 1222333332 23343322 2234433332 33344566
Q ss_pred HHHHHHHHHHhCCCCC------CHHHHHHHHHH-------HHhcCChhHHHHHHHHHHH--CCCCCCHH-----------
Q 008454 281 RAVEVFKNMESMGFIP------SVTTYNTLISG-------HCNKGLLSLAMKFKNLMEK--NGIQPNVI----------- 334 (565)
Q Consensus 281 ~a~~~~~~m~~~g~~p------~~~~~~~li~~-------~~~~g~~~~a~~~~~~m~~--~g~~~~~~----------- 334 (565)
...++|+++....+.- |-.+|..=|.. --+...+..|.++++++.. .|+..+..
T Consensus 155 ~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~ 234 (656)
T KOG1914|consen 155 AVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEI 234 (656)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHH
Confidence 7777777776432210 11111111111 1123355566666665542 23221111
Q ss_pred ----HHHHHHHHHHHcC------C--HHHHHHHHHHHH-hCCCCCCHHH-HHHH----HHHHHhcCC-------hHHHHH
Q 008454 335 ----TFNTLIFGFCKKG------K--LHEANRIFSEMK-ATNVSPNVVT-YNTL----INGYGQVGN-------SEMGAS 389 (565)
Q Consensus 335 ----~~~~li~~~~~~g------~--~~~A~~~~~~m~-~~~~~~~~~~-~~~l----i~~~~~~g~-------~~~A~~ 389 (565)
.|..+|.-=-.++ . -....-++++.. -.+..|+.-. |... -+.+...|+ .+++..
T Consensus 235 ~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 235 QQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 1433333211111 0 011222222221 1222232211 0000 111222222 356666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 390 LYEEMLRNGIKVDILTYNALILGLCKEG---KTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 390 ~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
+++.....-..-+..+|..+...--..- ..+....+++++...-..--..+|..+++.-.+...+..|..+|.++.+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 7766665433335555555544322222 2455555666554432221223567777777777777778888888877
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 008454 467 SGCRP-NKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKG-- 543 (565)
Q Consensus 467 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 543 (565)
.+..+ +..++.+++.-+| .++.+-|.++|+--+.+ ...+...-...++.+.+.|+-..|+.+|++....++.||.
T Consensus 395 ~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~ 472 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK 472 (656)
T ss_pred ccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH
Confidence 66555 5666777777666 46777777777665554 3334444456677777777777788888877777655543
Q ss_pred hhHHHHHhhcccCCCcc
Q 008454 544 FDKLRTINCAPENGEKE 560 (565)
Q Consensus 544 ~~~~~ll~~~~~~g~~~ 560 (565)
..|..+|.-=..-||.+
T Consensus 473 ~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 473 EIWDRMLEYESNVGDLN 489 (656)
T ss_pred HHHHHHHHHHHhcccHH
Confidence 46777766555555543
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=3.9e-06 Score=81.99 Aligned_cols=253 Identities=14% Similarity=0.069 Sum_probs=186.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 272 AFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 351 (565)
-+.+.|++.+|.-.|+..++.... +...|.-|.......++-..|+..+++..+... -|..+.-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence 356789999999999998887544 788899999999999999999999999988753 377888888888999999999
Q ss_pred HHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 352 ANRIFSEMKATNVS--------PNVVTYNTLINGYGQVGNSEMGASLYEEML-RNGIKVDILTYNALILGLCKEGKTKKA 422 (565)
Q Consensus 352 A~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (565)
|++.++.-.....+ .+...-.. ..+.....+....++|-++. ..+..+|..+...|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999887654210 00000000 11112222334445555444 445557888888898889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 423 AYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK-HIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 423 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
.+.|+.+...... |...||.|...++...+.++|+..|.++++. .|+. .+...|.-+|...|.+++|...|-.++.
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999886544 7789999999999999999999999999986 5663 3444566688899999999998877654
Q ss_pred cC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 502 KC---------MAPDSIILSELYSGLHHCGKDELAMKLF 531 (565)
Q Consensus 502 ~~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~ 531 (565)
.. ..++..+|..|-.++...++.|.+.+..
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 31 1223457888877787788877555443
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=4e-06 Score=81.90 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=56.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 201 KTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIE 280 (565)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 280 (565)
.-+.+.|++.+|.-.|+.....++. +.++|..|...-...++-..|+..+++..+... -|....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHH
Confidence 3455667777777777777666544 666777777666666666667776666665532 24555566666666666666
Q ss_pred HHHHHHHHHHh
Q 008454 281 RAVEVFKNMES 291 (565)
Q Consensus 281 ~a~~~~~~m~~ 291 (565)
+|++.++..+.
T Consensus 371 ~Al~~L~~Wi~ 381 (579)
T KOG1125|consen 371 QALKMLDKWIR 381 (579)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=5.2e-08 Score=58.28 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 503 CMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 503 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
|+.||..+|+.||++||+.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=1.7e-05 Score=79.69 Aligned_cols=238 Identities=15% Similarity=0.128 Sum_probs=169.6
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 225 LPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTL 304 (565)
Q Consensus 225 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 304 (565)
+|--..-..+...+...|-...|+.+|+++. .|.-+|.+|+..|+..+|..+..+..++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3444455667777888888888888887764 4666778888888888888888877763 5788888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008454 305 ISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNS 384 (565)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 384 (565)
.+......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.. +.-..+|..+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88777777778888877764432 22222233344688888888888776654 44566777777778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 385 EMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 385 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 464 (565)
+.|.+.|......... +...||.+-.+|.+.++..+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8888888888775332 5678888888899888888898888888887643 5556666677777888888888888887
Q ss_pred HHcC-CCCCHHHHHHHHHHH
Q 008454 465 IRSG-CRPNKHIFEMLMSTF 483 (565)
Q Consensus 465 ~~~~-~~p~~~~~~~li~~~ 483 (565)
.... -.-|..+...++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 7531 112444444444443
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=5.3e-05 Score=81.34 Aligned_cols=226 Identities=11% Similarity=0.088 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP-----NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTY 371 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 371 (565)
+...|-..|......++.++|.++.++.... +.+ -...|.++++.-...|.-+...++|+++.+.- -....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 3556777777777778888888887777643 111 13456666666666677777778888777642 223456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVP-NASTYSALITGQCV 450 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 450 (565)
..|...|.+.+..++|.++++.|.+. ..-....|...+..+.+.++-++|..++.++.+.-..- ........+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 77777788888888888888888776 22356677777888888888788888887776642211 22344445555567
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHH
Q 008454 451 RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSI--ILSELYSGLHHCGKDELA 527 (565)
Q Consensus 451 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A 527 (565)
.|+.+.+..+|+..+..- +--...|+.+++.-.++|+.+.+..+|++++..++.|-.. .|...+..--..|+-+.+
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 788888888888777652 3445678888888888888888888888888777665443 455555544455554443
No 108
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=7.4e-08 Score=57.61 Aligned_cols=32 Identities=34% Similarity=0.736 Sum_probs=15.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 258 RISPNVYTLNMVMHAFCKLGIIERAVEVFKNM 289 (565)
Q Consensus 258 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 289 (565)
|+.||..+|+.||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 109
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=0.0011 Score=67.80 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHH------HhcccCCCChHHHHHHHHHHHhcCChHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSIL------YSYRMCDSSPLVFDLLFKTYAHRKKFRN 211 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~li~~~~~~g~~~~ 211 (565)
|-..+|...+..|-..++.+.|++.+++.-.. +..++.-+. ..|.....++..|.-....+-..|+.+.
T Consensus 856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h-----afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVH-----AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred ehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh-----HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHH
Confidence 45678888899999999999999998864321 222222221 2233344566677777777778899999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 212 ATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFK 287 (565)
Q Consensus 212 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 287 (565)
|+.+|....+ |..+++..|-.|+.++|-++-++- -|......+.+.|-..|++.+|...|.
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9998887665 233334444444444444443321 133333444444444444444444443
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=4.7e-05 Score=81.69 Aligned_cols=236 Identities=13% Similarity=0.036 Sum_probs=184.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 008454 262 NVYTLNMVMHAFCKLGIIERAVEVFKNMESM-GFIP---SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFN 337 (565)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 337 (565)
....|-..|......++.++|.++.++.... ++.- -...|.++++.-..-|.-+...++|++..+.. -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3567888888889999999999999998754 2211 23457777777777788889999999998862 2356688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHc
Q 008454 338 TLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIK-VDILTYNALILGLCKE 416 (565)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~ 416 (565)
.|...|.+.+++++|.++++.|.+.- .-....|...+..+.+..+-+.|..++.+..+.-.+ -........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 89999999999999999999998862 246678999999999999999999999998875222 1345566677777899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 008454 417 GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK--HIFEMLMSTFCQNEDFDRAAE 494 (565)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~ 494 (565)
|+.+.+..+|+.......+ ....|+..|..-.++|+.+.+..+|++.+..++.|-. ..|...+..=-..|+-+.++.
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 9999999999998876444 6678999999999999999999999999998877653 456666665556677666666
Q ss_pred HHHHHHH
Q 008454 495 VLLEMLE 501 (565)
Q Consensus 495 ~~~~~~~ 501 (565)
+=.++.+
T Consensus 1693 VKarA~E 1699 (1710)
T KOG1070|consen 1693 VKARAKE 1699 (1710)
T ss_pred HHHHHHH
Confidence 5555443
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=2.3e-05 Score=78.76 Aligned_cols=215 Identities=14% Similarity=0.081 Sum_probs=159.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 302 NTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQV 381 (565)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 381 (565)
..+...+...|-..+|..+++++. .|..++.+|+..|+..+|..+..+..++ +||...|..+++.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 446667777888888888888654 4556788888889888888888877773 78888888888877777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 382 GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLY 461 (565)
Q Consensus 382 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 461 (565)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+.- ...+|-.+..+..+.++++.|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHH
Confidence 7778888887765432 1122222233467888888888877665432 5567777777778888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 462 KSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 462 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
..-+... +-+...||.+-.+|.+.++-.+|...+.++.+.+ .-+..+|...+....+.|.+++|.+.+.++.+.
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 8887753 3446778888888888888888888888888876 335566777777788888888888888887643
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=0.00017 Score=70.19 Aligned_cols=355 Identities=13% Similarity=0.069 Sum_probs=209.3
Q ss_pred HHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 008454 147 LHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLP 226 (565)
Q Consensus 147 ~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 226 (565)
.++....|+++.|..+|-+.+.. .|++-..|..-..+|+..|++++|++=-.+-++....
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l-------------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~- 68 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIML-------------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD- 68 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHcc-------------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-
Confidence 45566789999999999988877 5567778888899999999999999887777775532
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhC---CCCCCHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG---IIERAVEVFKNMESM---GFIPSVTT 300 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~---g~~p~~~~ 300 (565)
-...|.....++.-.|++++|+.-|.+-++.. +.|...++.+..++.... +.-.--.++..+... ........
T Consensus 69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 46889999999999999999999999987764 335667777776662110 000000111111110 00011122
Q ss_pred HHHHHHHHHhc-------CChhHHHHHHHHHH--------HCC-------CCC----------------------CHHHH
Q 008454 301 YNTLISGHCNK-------GLLSLAMKFKNLME--------KNG-------IQP----------------------NVITF 336 (565)
Q Consensus 301 ~~~li~~~~~~-------g~~~~a~~~~~~m~--------~~g-------~~~----------------------~~~~~ 336 (565)
|..++..+-+. ...+...+..-.+. ..| ..| -..-.
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 33333222211 01111111111110 000 011 01123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-------HH
Q 008454 337 NTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYN-------AL 409 (565)
Q Consensus 337 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-------~l 409 (565)
..+.++..+..+++.|++-+....+.. -+..-++....+|...|.+......-+...+.|.. ...-|+ .+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 445566666667777777777666553 34444455555666666666666655555554432 122222 23
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCC
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK-HIFEMLMSTFCQNED 488 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~ 488 (565)
..+|.+.++++.|...|.+.......|+. ..+....+++.+......-. .|.. .-...-...+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccC
Confidence 33555566677777777665443323222 11223344444444433322 2222 112222556788999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 489 FDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
+..|...+.+++.+. +-|...|....-+|.+.|.+..|+.-.+...+.
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999985 557889999999999999999999988877666
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.56 E-value=0.00017 Score=75.08 Aligned_cols=389 Identities=12% Similarity=0.043 Sum_probs=208.7
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
.+++...|+..|-.+.+..+ .-...|..+.+++....+...|...|++..+. .+.+...
T Consensus 470 ~rK~~~~al~ali~alrld~--~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL-------------------Datdaea 528 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDV--SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL-------------------DATDAEA 528 (1238)
T ss_pred hhhhHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------Cchhhhh
Confidence 34566677777776666543 23467888888888877888888888877766 3446666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGF-LPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 274 (565)
.....+.|++..+++.|..+.-..-+... ..-...|..+.-.|.+.++...|..-|+...+..+ -|...|..++.+|.
T Consensus 529 aaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~ 607 (1238)
T KOG1127|consen 529 AAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYP 607 (1238)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHH
Confidence 77778888888888888777333222111 01122344455556677777788888877766543 36677888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHc
Q 008454 275 KLGIIERAVEVFKNMESMGFIPSVTTYNT--LISGHCNKGLLSLAMKFKNLMEKNG------IQPNVITFNTLIFGFCKK 346 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~ 346 (565)
+.|.+..|.++|.+..... |+. .|.. .....|..|.+.+++..+......- ..--..++-.+...+.-.
T Consensus 608 ~sGry~~AlKvF~kAs~Lr--P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~ 684 (1238)
T KOG1127|consen 608 ESGRYSHALKVFTKASLLR--PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAIT 684 (1238)
T ss_pred hcCceehHHHhhhhhHhcC--cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 8888888888887776542 322 2221 2234566777888777776654321 000112222222222222
Q ss_pred CCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--H-H---HH-HHHHHHHCCCC------------
Q 008454 347 GKL-------HEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSE--M-G---AS-LYEEMLRNGIK------------ 400 (565)
Q Consensus 347 g~~-------~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~-A---~~-~~~~m~~~~~~------------ 400 (565)
|-. +++++.|.-........+...|-.+..+|.-.-..+ . . .. ++.+....+.-
T Consensus 685 gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c 764 (1238)
T KOG1127|consen 685 GFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYEC 764 (1238)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 222 223333222222211222222222222221100000 0 0 00 01111111111
Q ss_pred --------CCHHHHHHHHHHHHH----c----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 401 --------VDILTYNALILGLCK----E----GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 401 --------~~~~~~~~li~~~~~----~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 464 (565)
.+..+|..++..|.+ . .+...|...++...+..-. +..+|+.|.-. ...|++.-|...|-.-
T Consensus 765 ~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks 842 (1238)
T KOG1127|consen 765 GIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKS 842 (1238)
T ss_pred hhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhh
Confidence 122333333333332 1 1233566666666554322 55666666554 4456666666666655
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 465 IRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRK 533 (565)
Q Consensus 465 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 533 (565)
.... +....+|..+...+.+..+++-|...|....... +.+...|--........|+.-++..+|..
T Consensus 843 ~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 843 RFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 5543 4455667777777778888888888888776642 22444444433344456777777777765
No 114
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.55 E-value=5.2e-05 Score=76.02 Aligned_cols=265 Identities=17% Similarity=0.187 Sum_probs=145.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
..|+.|.+.|.+.+|......=.. +..|......+..++.+..-+++|-++|+.+..- ...+.+|-+..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHccc
Confidence 356778888888777664322111 2235566666666666666666666666655321 11111121111
Q ss_pred CHHHHHHHHHHH----------------HhCCCCCC--------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 008454 278 IIERAVEVFKNM----------------ESMGFIPS--------VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV 333 (565)
Q Consensus 278 ~~~~a~~~~~~m----------------~~~g~~p~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 333 (565)
-+.+|+++-+-. ...| ..| ....-..+.+....+.+.+|+.+++.+++... -.
T Consensus 689 af~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~--~s 765 (1636)
T KOG3616|consen 689 AFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKT--AS 765 (1636)
T ss_pred HHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--cc
Confidence 122222221110 0000 000 00111233445556677777777777776532 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGL 413 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (565)
.-|..+.+-|...|+++.|.++|.+.- .++-.|..|.+.|+++.|.++-++... .......|.+-..-+
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDL 834 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhH
Confidence 445666677888888888888775532 245567788888888888877666543 344556666666666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAA 493 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 493 (565)
-++|++.+|.+++-.+.. |+ ..|..|-+.|..+..+++..+-... --..|...+..-+...|+...|.
T Consensus 835 dehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred HhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHH
Confidence 777777777777654432 33 3456666777777666665543211 11234455555666667777766
Q ss_pred HHHHHH
Q 008454 494 EVLLEM 499 (565)
Q Consensus 494 ~~~~~~ 499 (565)
.-|-+.
T Consensus 903 ~~flea 908 (1636)
T KOG3616|consen 903 EHFLEA 908 (1636)
T ss_pred HHHHhh
Confidence 655443
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=1.8e-05 Score=70.13 Aligned_cols=165 Identities=12% Similarity=-0.011 Sum_probs=100.9
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 190 DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMV 269 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 269 (565)
+.+..+ ..+-..+.-.|+-+.+..+.......... |....+..+....+.|++..|...+.+..... ++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 334444 45556666666666666666665443322 55555556666677777777777777665432 4566677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 270 MHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL 349 (565)
Q Consensus 270 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 349 (565)
.-+|.+.|++++|..-|.+..+.-.. +...++.+.-.+.-.|+.+.|..++......+. .|..+-..+.......|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCCh
Confidence 77777777777777776666655322 444555666666666777777777666665542 2555556666666666777
Q ss_pred HHHHHHHHHH
Q 008454 350 HEANRIFSEM 359 (565)
Q Consensus 350 ~~A~~~~~~m 359 (565)
++|..+...-
T Consensus 219 ~~A~~i~~~e 228 (257)
T COG5010 219 REAEDIAVQE 228 (257)
T ss_pred HHHHhhcccc
Confidence 7766665443
No 116
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.53 E-value=0.0021 Score=66.71 Aligned_cols=222 Identities=12% Similarity=0.074 Sum_probs=130.3
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHH
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFD 197 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (565)
++++.|+.-...+.+..|......++.. -.+.+.|+.++|..+++.....+ +.|..+..
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLka--Lsl~r~gk~~ea~~~Le~~~~~~-------------------~~D~~tLq 81 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKA--LSLFRLGKGDEALKLLEALYGLK-------------------GTDDLTLQ 81 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHH--HHHHHhcCchhHHHHHhhhccCC-------------------CCchHHHH
Confidence 4677777777777776654333333333 33457788888887777655442 23666777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
.+-.+|...|+.++|+.+|+...... |+.+....+..+|.+.+.+.+-.+.--+|-+. .+-+.+.+=.++......-
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhc
Confidence 77788888888888888888887755 56777777777777777765533333333222 2223444434444433321
Q ss_pred ----------CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHH
Q 008454 278 ----------IIERAVEVFKNMESMG-FIPSVTTYNTLISGHCNKGLLSLAMKFKN-LMEKNGIQPNVITFNTLIFGFCK 345 (565)
Q Consensus 278 ----------~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~~~~~~~~~li~~~~~ 345 (565)
-..-|.+.++.+.+.+ -.-+..-.......+...|++++|++++. ...+.-...+...-+.-++.+..
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1233555666665543 22222223333445566777888888773 33333233344444555677777
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 008454 346 KGKLHEANRIFSEMKATN 363 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~~ 363 (565)
.++|.+..++-.++...|
T Consensus 239 l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKG 256 (932)
T ss_pred hcChHHHHHHHHHHHHhC
Confidence 777777777777777665
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.51 E-value=2.9e-05 Score=71.64 Aligned_cols=188 Identities=11% Similarity=-0.008 Sum_probs=127.3
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-c-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH--HHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL-P-IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNV--YTL 266 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~ 266 (565)
.....+..++..+...|++++|...|+++...... | ...++..+...+...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35567778888999999999999999999876532 1 1256788889999999999999999999875432111 244
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 267 NMVMHAFCKL--------GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNT 338 (565)
Q Consensus 267 ~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 338 (565)
..+..++... |+.++|.+.++.+.+.... +...+..+..... ... .. ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 4444555544 6788899999888765322 2222222211100 000 00 011124
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 339 LIFGFCKKGKLHEANRIFSEMKATN--VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
+...+.+.|++++|+..++...+.. .+.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567888999999999999887752 1223567888889999999999999988888765
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.0001 Score=65.33 Aligned_cols=250 Identities=10% Similarity=0.051 Sum_probs=138.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGII 279 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 279 (565)
++-+.-.|.+..++..-....... -++..-..+-++|...|++.....- ++. |-.|.......+-......+..
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchh
Confidence 344555677777776655544332 2444444555677777765544322 211 1123333333333333223333
Q ss_pred HHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 280 ERA-VEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSE 358 (565)
Q Consensus 280 ~~a-~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 358 (565)
++- .++.+.+......-+......-...|+..|++++|++...... +......=+..+.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2344444444333333333334456777888888887776521 333333334556667777888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 359 MKATNVSPNVVTYNTLINGYGQ----VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL 434 (565)
Q Consensus 359 m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (565)
|.+.. +..+.+.|..++.+ .+.+..|.-+|++|-++ ..|+..+.+....++...|++++|..++++......
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 87642 55566666665543 34677777777777764 556777777777777777777777777777776654
Q ss_pred CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 008454 435 VPNASTYSALITGQCVRKN-SERAFQLYKSMIR 466 (565)
Q Consensus 435 ~p~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~ 466 (565)
. ++.+...+|..-...|. .+...+.+.++..
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 4 45555444444434443 3333444455444
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=9.3e-05 Score=77.92 Aligned_cols=133 Identities=10% Similarity=0.028 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 367 NVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALIT 446 (565)
Q Consensus 367 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 446 (565)
+...+..|.....+.|.+++|..+++...+.... +......++..+.+.+++++|....++....... +......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 3444555555555555555555555555543221 3334444455555555555555555555544332 3444444455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 447 GQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 447 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555555421 222445555555555555555555555555443
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=2.9e-05 Score=71.64 Aligned_cols=187 Identities=11% Similarity=0.016 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HH
Q 008454 331 PNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPN---VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDI--LT 405 (565)
Q Consensus 331 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~ 405 (565)
.....+..+...+.+.|++++|...++++.... +.+ ...+..+..++...|++++|...++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 356677788888899999999999999887753 222 245677888889999999999999999876432121 24
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 406 YNALILGLCKE--------GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFE 477 (565)
Q Consensus 406 ~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 477 (565)
+..+..++.+. |+.++|.+.++.+.+.... +...+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~-------~~-------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN-------RL-------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH-------HH-------HHHHH
Confidence 55556666554 6778888888888765332 2222222211100 000 00 01112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 478 MLMSTFCQNEDFDRAAEVLLEMLEKCM--APDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.+...+.+.|++++|...++++++... +.....+..+..++.+.|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455668889999999999999887632 123567888999999999999999998888654
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=0.00014 Score=77.34 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 230 SCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNME 290 (565)
Q Consensus 230 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (565)
++..+..+|-+.|+.++|..+|+++.+.. +-|..+.|.+...|... ++++|++++.+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 44444444444444444444444444443 22444444444444444 4444444444433
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=4.8e-05 Score=67.52 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=75.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC--HHHH
Q 008454 346 KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGL-CKEGK--TKKA 422 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 422 (565)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445555555555555543 455666666666666666666666666666665433 555555555543 45555 3666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008454 423 AYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHI 475 (565)
Q Consensus 423 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 475 (565)
..++++..+.+.. +...+..+...+...|++++|+..|+++++.. +|+..-
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r 180 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH
Confidence 6666666665544 55566666666666677777777776666653 444433
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.45 E-value=6.8e-05 Score=66.55 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=103.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 340 IFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKT 419 (565)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 419 (565)
+-.|...|+++.+....+.+... . ..+...++.+++...++...+.+.. |...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 35677778877765444222111 0 0112255667777777777666443 777888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 420 KKAAYLVKDLDKNSLVPNASTYSALITGQ-CVRKN--SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVL 496 (565)
Q Consensus 420 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (565)
++|...|++..+.... +...+..+..++ ...|+ .++|.+++++.++.+ +-+..++..+...+...|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888776544 666677776653 55565 478888888888764 446677777777788888888888888
Q ss_pred HHHHHcCCCCCHHHH
Q 008454 497 LEMLEKCMAPDSIIL 511 (565)
Q Consensus 497 ~~~~~~~~~p~~~~~ 511 (565)
+++++. ..|+..-+
T Consensus 168 ~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 168 QKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHhh-CCCCccHH
Confidence 888776 33344333
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.44 E-value=8.5e-05 Score=78.22 Aligned_cols=149 Identities=9% Similarity=-0.010 Sum_probs=124.2
Q ss_pred ccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH
Q 008454 187 RMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTL 266 (565)
Q Consensus 187 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 266 (565)
+..+.++.++-.|.....+.|.+++|..+++...+.... +......+...+.+.+++++|+..+++...... -+....
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~ 157 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREI 157 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHH
Confidence 345667899999999999999999999999999997643 677888899999999999999999999987653 366777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 267 NMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTL 339 (565)
Q Consensus 267 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 339 (565)
+.+..++.+.|++++|..+|+++...+. -+..++..+...+-..|+.++|...|+...+.- .+....|+.+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 8888889999999999999999998443 258888999999999999999999999987652 2344444443
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.44 E-value=9.6e-05 Score=65.57 Aligned_cols=155 Identities=13% Similarity=0.046 Sum_probs=76.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008454 374 LINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKN 453 (565)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 453 (565)
+-..+...|+-+....+........ .-|.......+....+.|++..|...+.+...... +|...|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHccC
Confidence 3344444455444444444433221 12444444455555555555555555555544322 355555555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008454 454 SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFR 532 (565)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 532 (565)
++.|..-|.+..+.- .-+...++.+...+.-.|+.+.|..++......+. -|..+-..|.......|++++|..+..
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 555555555555532 22334445555555555555555555555544321 244444455555555555555555443
No 126
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.43 E-value=0.00042 Score=69.81 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=76.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008454 409 LILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNED 488 (565)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 488 (565)
.+.+......+.+|+.+++.+..... -..-|..+...|...|+++.|.++|-+. ..++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 34455566778888888887776532 2334677777888888888888887654 234556777888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 489 FDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
++.|.++-++.. |.......|-.-..-+-+.|++.+|.++|-.+
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 888887765543 33444556666666677788888888777443
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=0.00016 Score=77.07 Aligned_cols=237 Identities=11% Similarity=0.107 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNV-YTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLI 305 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 305 (565)
+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+...++.+++.-+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5677888888888888888888888876654 3333 2233333355566664444333 233
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008454 306 SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSE 385 (565)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 385 (565)
.......++..+..+...|.+.+ -+..++..+..+|-+.|+.++|..+++++.+.. +-|....|.+...|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 33334444544445555555543 244566777778888888888888888887765 56677777777777777 888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 386 MGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMI 465 (565)
Q Consensus 386 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 465 (565)
+|.+++.+.+.. +...+++..+..++.++...... +.. .-.++.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d----------------~f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFD----------------FFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cch----------------HHHHHHHHHH
Confidence 888777776654 44555666666666666654322 221 1222222222
Q ss_pred Hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 466 RS-GCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLH 519 (565)
Q Consensus 466 ~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 519 (565)
.. |..--..++..+-..|...++++++.++++.+++.... |.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 21 11222344555555666677777777777777766333 4555556666554
No 128
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.40 E-value=0.00019 Score=74.82 Aligned_cols=353 Identities=12% Similarity=0.022 Sum_probs=218.3
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008454 176 SKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMR 255 (565)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 255 (565)
..-|..++++.+..+.-..+|..|...|+...+...|.+.|++..+.+.. +...+......|++..+++.|..+.-..-
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34556666666666666778999999999888999999999999887654 78899999999999999999999844332
Q ss_pred HCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 008454 256 RNRISPNV--YTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV 333 (565)
Q Consensus 256 ~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 333 (565)
+.. +.-. ..|....-.|.+.++...|+.-|+...+..+. |...|..+..+|.+.|++..|.++|.+.... .|+.
T Consensus 554 qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 554 QKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred hhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 221 1111 12223344566788999999999988877554 7889999999999999999999999988875 3332
Q ss_pred HHHHH--HHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChH-------HHHHHHHHHHHCC
Q 008454 334 ITFNT--LIFGFCKKGKLHEANRIFSEMKATN------VSPNVVTYNTLINGYGQVGNSE-------MGASLYEEMLRNG 398 (565)
Q Consensus 334 ~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~-------~A~~~~~~m~~~~ 398 (565)
.|.. ..-..+..|.+.+|+..+....... ..--..++-.+...+...|-.. ++++.|.-...+.
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 2222 2344577899999999988775431 1111222222222233333333 3333333333332
Q ss_pred CCCCHHHHHHHHHHHHHcCCHH------HHHHHH-HHHHhCCCC--------------------CCHHHHHHHHHHHHh-
Q 008454 399 IKVDILTYNALILGLCKEGKTK------KAAYLV-KDLDKNSLV--------------------PNASTYSALITGQCV- 450 (565)
Q Consensus 399 ~~~~~~~~~~li~~~~~~g~~~------~A~~~~-~~~~~~~~~--------------------p~~~~~~~li~~~~~- 450 (565)
..-+...|-.+.++|.-.-..+ ....+| .+....+.- .+..+|..|+..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 2223334433333322111000 001111 111111111 123334444443333
Q ss_pred -------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008454 451 -------RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGK 523 (565)
Q Consensus 451 -------~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 523 (565)
..+...|+..++..++.. ..+..+|+.|.-. ...|++.-|.-.|-+-... .+-...+|..+...+....+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEeccc
Confidence 123357788888887753 4556666666544 5557777777766555443 23356688888888899999
Q ss_pred HHHHHHHHHHHHHC
Q 008454 524 DELAMKLFRKMEIR 537 (565)
Q Consensus 524 ~~~A~~~~~~m~~~ 537 (565)
++-|...|.+.+..
T Consensus 866 ~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHhhHHHHhhhhc
Confidence 99999999988654
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0011 Score=59.07 Aligned_cols=221 Identities=17% Similarity=0.160 Sum_probs=144.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDI-ALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
--+.++|...|++...+.- +.... .|.......+...+...++.+. ...+.+.+......-+......-...|+.
T Consensus 45 ~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~ 120 (299)
T KOG3081|consen 45 VYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMH 120 (299)
T ss_pred HHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhc
Confidence 3455667767766544332 22222 3444444444444444444443 33455555554444444444455567888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 008454 276 LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK----KGKLHE 351 (565)
Q Consensus 276 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 351 (565)
.|++++|++...... +......=+..+.+..+++.|.+.+++|.+.. +..+.+.|..++.+ .+.+.+
T Consensus 121 ~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 121 DGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred CCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhh
Confidence 999999998887622 44444444566778888999999999998752 56677766666654 457889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 008454 352 ANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKT-KKAAYLVKDLD 430 (565)
Q Consensus 352 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 430 (565)
|.-+|++|.++ .+|+..+.+-...++...|++++|..+++....+... +..+...++-+-...|.. +...+.+.++.
T Consensus 192 AfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 192 AFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 99999999875 4788888888888888999999999999999987655 566665555555555554 44456666665
Q ss_pred hC
Q 008454 431 KN 432 (565)
Q Consensus 431 ~~ 432 (565)
..
T Consensus 270 ~~ 271 (299)
T KOG3081|consen 270 LS 271 (299)
T ss_pred hc
Confidence 54
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.33 E-value=5.6e-05 Score=63.34 Aligned_cols=100 Identities=11% Similarity=-0.006 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
+|..+..+...+...|++++|...|+........ +...|..+..++.+.|++++|...|+...+.. +.+...+..+..
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV 100 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 3444556777888888888888888888876644 77888888888888888888888888888764 346777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC
Q 008454 272 AFCKLGIIERAVEVFKNMESMG 293 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g 293 (565)
++...|+.++|...|+...+..
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888887753
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.30 E-value=9.6e-05 Score=61.94 Aligned_cols=92 Identities=13% Similarity=-0.037 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 408 ALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNE 487 (565)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 487 (565)
.+...+...|++++|...|+.+...... +...|..+..++...|++++|...|+.+.... +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3444445555555555555555444322 44445555555555555555555555555442 334445555555555555
Q ss_pred CHHHHHHHHHHHHH
Q 008454 488 DFDRAAEVLLEMLE 501 (565)
Q Consensus 488 ~~~~A~~~~~~~~~ 501 (565)
++++|...|+..++
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.0016 Score=63.06 Aligned_cols=112 Identities=15% Similarity=0.093 Sum_probs=49.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 345 KKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 345 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (565)
..|++++|+..++.+.+.. +-|..........+.+.++..+|.+.++++...... .......+..+|.+.|+..+|..
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHH
Confidence 3444555555555444431 222222333344444445555555555554443211 13333444444455555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008454 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQ 459 (565)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 459 (565)
+++........ |...|..|.++|...|+..++..
T Consensus 396 ~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 396 ILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHH
Confidence 54444443322 44445555555554444444433
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.0019 Score=62.66 Aligned_cols=139 Identities=15% Similarity=0.082 Sum_probs=91.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChH
Q 008454 307 GHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPN-VVTYNTLINGYGQVGNSE 385 (565)
Q Consensus 307 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~ 385 (565)
.+...|.+++|+..++.+...- +-|...+....+.+.+.++.++|.+.++.+... .|+ ....-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3455677777777777776652 224455555557777777777777777777765 344 445556667777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 386 MGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMI 465 (565)
Q Consensus 386 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 465 (565)
+|+.+++....... -|...|..|..+|...|+..++.....+ .+...|+++.|...+....
T Consensus 392 eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 77777777766533 3677777777777777776666544432 3445677777777777766
Q ss_pred Hc
Q 008454 466 RS 467 (565)
Q Consensus 466 ~~ 467 (565)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 64
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.0015 Score=57.67 Aligned_cols=187 Identities=17% Similarity=0.146 Sum_probs=120.9
Q ss_pred CCHHHHHHHHHHHHhC---C-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHH
Q 008454 277 GIIERAVEVFKNMESM---G-FIPSVTT-YNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV-ITFNTLIFGFCKKGKLH 350 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~---g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~ 350 (565)
.+.++.++++.++... | ..++..+ |..++-+....|+.+.|...++++.+.- |.. .+-..-.-.+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 3455566666555432 3 3344433 4445566667788888888888877652 332 22221122334567888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 351 EANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 351 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
+|+++++.+.+.+ +.|.+++-.=+...-..|+--+|++-+.+..+. +..|...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888775 566677766566666667777777777777765 44588888888888888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 008454 431 KNSLVPNASTYSALITGQCVR---KNSERAFQLYKSMIRSG 468 (565)
Q Consensus 431 ~~~~~p~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~~ 468 (565)
-..+. +...+..+...+... .+.+.|.++|.+.++..
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 65332 444555555544433 35667788888887753
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.18 E-value=0.014 Score=60.91 Aligned_cols=71 Identities=11% Similarity=-0.026 Sum_probs=56.5
Q ss_pred HhhhccCCChHHHHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 008454 97 LTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDS 169 (565)
Q Consensus 97 l~~~~~~l~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~ 169 (565)
+.+.++.+-.....++.+...+..+.|+...+-...-.+ ++..+...+-.++.+.++.++|..++++....
T Consensus 36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~ 106 (932)
T KOG2053|consen 36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK 106 (932)
T ss_pred HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 344556666666777778888888899977776554443 58889999999999999999999999999887
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.0035 Score=55.53 Aligned_cols=186 Identities=16% Similarity=0.161 Sum_probs=117.9
Q ss_pred CChHHHHHHHHHHHHC---C-CCcCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHH
Q 008454 207 KKFRNATDTFCQMRDY---G-FLPII-ESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTL-NMVMHAFCKLGIIE 280 (565)
Q Consensus 207 g~~~~A~~~~~~~~~~---~-~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~ 280 (565)
.+.++.++++..+... | ..++. ..|..++-+....|+.+.|...++.+...- |...-. ..-.-.+-..|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4667777777776542 3 33333 345666677777788888888888876542 232211 11111234567888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 281 RAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMK 360 (565)
Q Consensus 281 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 360 (565)
+|+++++.+.+.. +.|.+++---+...-..|+--+|++-+....+. +..|...|.-+.+.|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888887765 335666665555666666666777766666654 34578888888888888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHC
Q 008454 361 ATNVSPNVVTYNTLINGYGQVG---NSEMGASLYEEMLRN 397 (565)
Q Consensus 361 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 397 (565)
-.. +.+...+..+...+.-.| +.+.+.++|.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 653 445555555555554443 556677777777765
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.12 E-value=0.00018 Score=59.77 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 408 ALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNE 487 (565)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 487 (565)
.+...+...|++++|...++.+...+.. +...+..+...+...|++++|..+++..++.+ +.+...+..+...+...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcC
Confidence 3334444444444444444444333211 33334444444444444444444444444332 223333333444444444
Q ss_pred CHHHHHHHHHHHHH
Q 008454 488 DFDRAAEVLLEMLE 501 (565)
Q Consensus 488 ~~~~A~~~~~~~~~ 501 (565)
++++|...|++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.10 E-value=0.00015 Score=60.24 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 141 ETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMR 220 (565)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 220 (565)
.....+...+...|++++|...++.+... .+.++..+..+...+...|++++|...|+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY-------------------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh-------------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555544443 22344444455555555555555555555544
Q ss_pred HCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 221 DYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 221 ~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
+.+.. +...+..+...+...|++++|...|+...+
T Consensus 79 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 79 ALDPD-DPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred hcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43321 344444444455555555555555554444
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=7.9e-06 Score=49.52 Aligned_cols=33 Identities=36% Similarity=0.618 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008454 510 ILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK 542 (565)
Q Consensus 510 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 542 (565)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=0.00052 Score=66.94 Aligned_cols=124 Identities=13% Similarity=0.152 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (565)
...|+..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|++++++.++.. +-+......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555555677777777777777653 33 33446666666667777777777777542 4455566666666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 486 NEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
.++++.|..+.+++.+. .+-+..+|..|..+|.+.|++++|+-.++.|.
T Consensus 247 k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777764 22234477777777777777777777777654
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1.2e-05 Score=48.29 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008454 509 IILSELYSGLHHCGKDELAMKLFRKMEIRGLLP 541 (565)
Q Consensus 509 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 541 (565)
.+|+.++.+|.+.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888887776
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.99 E-value=0.0005 Score=67.07 Aligned_cols=122 Identities=13% Similarity=0.129 Sum_probs=70.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008454 233 KFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG 312 (565)
Q Consensus 233 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 312 (565)
.++..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|.+++.+..+... -+......-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 34444445566666666666666542 33 233455555566666666666666654321 24444454555566666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 313 LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMK 360 (565)
Q Consensus 313 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 360 (565)
+++.|+.+.+++.+.. +-+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666652 2244466666666666666666666666543
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.94 E-value=0.00055 Score=57.58 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=46.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPI--IESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
.+...+...|++++|...|+.+......+. ......+...+...|++++|+..++..... ......+......+.+
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHH
Confidence 344556666666666666666665542222 123334455555666666666666443221 1223344455555566
Q ss_pred cCCHHHHHHHHHH
Q 008454 276 LGIIERAVEVFKN 288 (565)
Q Consensus 276 ~g~~~~a~~~~~~ 288 (565)
.|+.++|...|+.
T Consensus 131 ~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 131 QGDYDEARAAYQK 143 (145)
T ss_pred CCCHHHHHHHHHH
Confidence 6666666665554
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.00071 Score=56.89 Aligned_cols=20 Identities=15% Similarity=-0.031 Sum_probs=8.1
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 008454 513 ELYSGLHHCGKDELAMKLFR 532 (565)
Q Consensus 513 ~li~~~~~~g~~~~A~~~~~ 532 (565)
...+.|.+.|++++|...|+
T Consensus 123 ~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 123 LLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 33334444444444444433
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.92 E-value=0.00029 Score=68.96 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 261 PNVYTLNMVMHAFCKLGIIERAVEVFKNMESM--GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNT 338 (565)
Q Consensus 261 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 338 (565)
.+......++..+....+++.+..++.+.... ....-..|..++++.|.+.|..+.++.++..=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444555555555555555555555555443 1111223334556666666666666666655555566666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 339 LIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQV 381 (565)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 381 (565)
||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666655555554444555555444444443
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.90 E-value=2.3e-05 Score=47.44 Aligned_cols=33 Identities=39% Similarity=0.786 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPN 472 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 472 (565)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666665554
No 147
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.85 E-value=0.00025 Score=54.33 Aligned_cols=77 Identities=22% Similarity=0.388 Sum_probs=49.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGF-LPIIESCNKFLSSLLDSE--------RVDIALGFYKEMRRNRISPNVYTLNM 268 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (565)
.-|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555666788888888888888777 778888888777776542 12234555555555555566666655
Q ss_pred HHHHHH
Q 008454 269 VMHAFC 274 (565)
Q Consensus 269 li~~~~ 274 (565)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
No 148
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.85 E-value=0.00029 Score=53.98 Aligned_cols=79 Identities=23% Similarity=0.372 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHH
Q 008454 232 NKFLSSLLDSERVDIALGFYKEMRRNRI-SPNVYTLNMVMHAFCKLG--------IIERAVEVFKNMESMGFIPSVTTYN 302 (565)
Q Consensus 232 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~~~ 302 (565)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++...++.. ++-..+.+|++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3345555566888888888888888888 788888888888777643 2345667777777777777777777
Q ss_pred HHHHHHHh
Q 008454 303 TLISGHCN 310 (565)
Q Consensus 303 ~li~~~~~ 310 (565)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77766654
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.85 E-value=3e-05 Score=46.59 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESMGFI 295 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 295 (565)
+|+.+|.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.82 E-value=0.00032 Score=68.72 Aligned_cols=124 Identities=14% Similarity=0.052 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008454 293 GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN--GIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVT 370 (565)
Q Consensus 293 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 370 (565)
+...+......+++.+....+.+.+..++-+.... ....-..|..++++.|.+.|..++++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44557777777888888888888888888877754 2222234456888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 371 YNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKE 416 (565)
Q Consensus 371 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (565)
++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777666777776666666655
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=4.2e-05 Score=44.74 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008454 510 ILSELYSGLHHCGKDELAMKLFRKMEIRGL 539 (565)
Q Consensus 510 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 539 (565)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677888888888888888888888877764
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.69 E-value=0.0011 Score=62.51 Aligned_cols=129 Identities=12% Similarity=0.141 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITG-QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
+|..++...-+.+..+.|..+|.++.+.+.. +...|...... +...++.+.|.++|+..++. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4555555555555566666666666543211 22333333333 22244455566666666654 344555556666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 484 CQNEDFDRAAEVLLEMLEKCMAPDS---IILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
.+.|+.+.|..+|++.+.. +.++. ..|...++.-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666544 22222 3566666666666666666666666654
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.69 E-value=0.028 Score=51.61 Aligned_cols=61 Identities=5% Similarity=-0.003 Sum_probs=39.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPII--ESCNKFLSSLLDSERVDIALGFYKEMRRNR 258 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 258 (565)
.....+...|++++|++.|+.+......... .+.-.++.++.+.+++++|...+++..+..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3455556678888888888888775433211 122345667777788888888887777653
No 154
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.64 E-value=0.018 Score=52.93 Aligned_cols=181 Identities=10% Similarity=-0.007 Sum_probs=103.6
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhccc
Q 008454 110 KHVLLKVQKDYVLSLEFFTWVQTHKPSSLT-LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRM 188 (565)
Q Consensus 110 ~~~l~~~~~~~~~al~~f~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (565)
.+......+++..|.+.|+.+....|.++- ......++.++.+.+++++|...++++++.. +.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~----------------P~ 101 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----------------PT 101 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------cC
Confidence 344455678999999999999988765432 2333567888899999999999999998872 22
Q ss_pred CCCChHHHHHHHHHHHhcC---------------Ch---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRK---------------KF---RNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGF 250 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g---------------~~---~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~ 250 (565)
.+..+.++-.++.++...+ |. .+|++.|+.+.+ -|-...-..+|...
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~r 166 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKR 166 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHH
Confidence 3333334433333321111 11 223333333333 33333334445444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008454 251 YKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM--GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLME 325 (565)
Q Consensus 251 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 325 (565)
+..+... =...-..+.+.|.+.|.+..|..-++.+.+. +..........++.+|.+.|..++|..+...+.
T Consensus 167 l~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 167 LVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4444321 0111124455566777777777777777654 333344555566677777777777766665543
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.63 E-value=0.0012 Score=50.29 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 443 ALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCG 522 (565)
Q Consensus 443 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 522 (565)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+.. ..+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 33444444555555555555554432 2223444445555555555555555555554432 112234455555555555
Q ss_pred CHHHHHHHHHHHH
Q 008454 523 KDELAMKLFRKME 535 (565)
Q Consensus 523 ~~~~A~~~~~~m~ 535 (565)
++++|...+++..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555543
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.63 E-value=0.0014 Score=49.80 Aligned_cols=93 Identities=18% Similarity=0.108 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008454 407 NALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN 486 (565)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 486 (565)
..+...+...|++++|...++.+.+.... +...+..+...+...+++++|.+.++...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 34455555566666666666655543221 23445555555556666666666666665543 23334555555666666
Q ss_pred CCHHHHHHHHHHHHH
Q 008454 487 EDFDRAAEVLLEMLE 501 (565)
Q Consensus 487 g~~~~A~~~~~~~~~ 501 (565)
|+++.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666655544
No 157
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.62 E-value=0.0015 Score=56.67 Aligned_cols=86 Identities=22% Similarity=0.287 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChhHHHHH
Q 008454 262 NVYTLNMVMHAFCK-----LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNK----------------GLLSLAMKF 320 (565)
Q Consensus 262 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~a~~~ 320 (565)
+..+|..++..|.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55555555555553 355566666666666667666777777666655431 123445555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 321 KNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 321 ~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
+++|...|+-||..++..+++.+++.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 555555555555555555555554443
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.61 E-value=0.0029 Score=50.89 Aligned_cols=99 Identities=8% Similarity=-0.071 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFL--PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS--PNVYTLNMVM 270 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li 270 (565)
++..++..+.+.|++++|.+.|+.+...... .....+..+...+.+.|+++.|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455666777777778887777777664321 11345666777777777777777777777654211 1234566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC
Q 008454 271 HAFCKLGIIERAVEVFKNMESMG 293 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~g 293 (565)
.++.+.|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66777777777777777776653
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.60 E-value=0.0032 Score=50.69 Aligned_cols=19 Identities=5% Similarity=0.062 Sum_probs=7.1
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 008454 446 TGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~m 464 (565)
..+.+.|+++.|...|+.+
T Consensus 47 ~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 47 EAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHhhccHHHHHHHHHHH
Confidence 3333333333333333333
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.003 Score=59.58 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLING-YGQVGNSEMGASLYEEMLRNGIKVDILTYNALILG 412 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 412 (565)
.+|..+|+..-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357777777777777888888888877543 2334444444433 23346666688888887765 44466777777888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVPNA----STYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
+.+.|+.+.|..+|+..... + +.. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888887765 2 233 37777777777788888888888877765
No 161
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.59 E-value=0.0017 Score=56.49 Aligned_cols=103 Identities=16% Similarity=0.214 Sum_probs=68.1
Q ss_pred ChHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH
Q 008454 192 SPLVFDLLFKTYAHR-----KKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTL 266 (565)
Q Consensus 192 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 266 (565)
+..+|..+++.|.+. |.++-....+..|.+.|+..|..+|+.|++.+-+ |.+- -..+|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~------------ 111 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE------------ 111 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH------------
Confidence 556666666666543 6777788889999999999999999999998875 3221 11111111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008454 267 NMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGL 313 (565)
Q Consensus 267 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 313 (565)
..- .-.+.+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 112 ---F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ---FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 112345677777888777877888888777777766554
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.55 E-value=0.0044 Score=51.39 Aligned_cols=93 Identities=10% Similarity=-0.059 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 337 NTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKE 416 (565)
Q Consensus 337 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (565)
-.+...+...|++++|.++|+.+.... +-+..-|..|..++-..|++++|+..|.......+. |...+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 344455566677777777777666543 334455556666666677777777777777666543 666666677777777
Q ss_pred CCHHHHHHHHHHHHh
Q 008454 417 GKTKKAAYLVKDLDK 431 (565)
Q Consensus 417 g~~~~A~~~~~~~~~ 431 (565)
|+.+.|.+.|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777766554
No 163
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.54 E-value=0.089 Score=50.31 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
+.+..|.-+...|+...|.++-.+.. .|+...|..-+.+++..+++++-.++... + -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 45556667778888888877766553 47888888889999999998877765432 1 23466888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 485 QNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRK 533 (565)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 533 (565)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 999988888887662 1 24566778888888888766444
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.49 E-value=0.00014 Score=42.45 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYG 223 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 223 (565)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666655
No 165
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.48 E-value=0.0028 Score=59.84 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=55.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH--HHhC--CCC-CCHHHHHHHHH
Q 008454 236 SSLLDSERVDIALGFYKEMRRNRISPNV----YTLNMVMHAFCKLGIIERAVEVFKN--MESM--GFI-PSVTTYNTLIS 306 (565)
Q Consensus 236 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~--m~~~--g~~-p~~~~~~~li~ 306 (565)
.-+|+.|+......+|+...+.|.. |. ..|..|..+|.-.+++++|+++... ...+ |-+ -.......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4567777888888888877776643 32 2344555555566677777665432 1111 100 01223333444
Q ss_pred HHHhcCChhHHHHHHHH----HHHCCCC-CCHHHHHHHHHHHHHcC
Q 008454 307 GHCNKGLLSLAMKFKNL----MEKNGIQ-PNVITFNTLIFGFCKKG 347 (565)
Q Consensus 307 ~~~~~g~~~~a~~~~~~----m~~~g~~-~~~~~~~~li~~~~~~g 347 (565)
.+--.|.+++|.-...+ ..+.|-. ....++..+.+.|...|
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKG 149 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcc
Confidence 55556666666543222 1222211 12344445556665544
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.47 E-value=0.0042 Score=60.82 Aligned_cols=87 Identities=13% Similarity=-0.018 Sum_probs=44.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 492 (565)
+...|++++|+..|+++.+.+.. +...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 34445555555555555544332 34445555555555555555555555555442 23344455555555555555555
Q ss_pred HHHHHHHHH
Q 008454 493 AEVLLEMLE 501 (565)
Q Consensus 493 ~~~~~~~~~ 501 (565)
...|+++++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555555554
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.47 E-value=0.0048 Score=51.17 Aligned_cols=96 Identities=13% Similarity=-0.023 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
....+..-+...|++++|..+|+-+...+.. +..-|-.|..++-..|++++|+..|..+.... +-|...+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444555566677777777777766665443 55556666666666777777777777776665 355666666666777
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 008454 485 QNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~ 502 (565)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777666554
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.45 E-value=0.0099 Score=51.60 Aligned_cols=82 Identities=10% Similarity=0.082 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPN--ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.++++.. +-+...+..+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34444444444555555555554443221111 2344444445555555555555555555432 22233344444444
Q ss_pred HhcCC
Q 008454 484 CQNED 488 (565)
Q Consensus 484 ~~~g~ 488 (565)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
No 169
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.44 E-value=0.13 Score=49.83 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=77.8
Q ss_pred HcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 008454 415 KEGK-TKKAAYLVKDLDKNSLVPNASTYSALI----TGQCV---RKNSERAFQLYKSMIRSGCRPN----KHIFEMLMST 482 (565)
Q Consensus 415 ~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li----~~~~~---~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~ 482 (565)
+.|. -++|+.+++.+.+-... |...-|.+. .+|.. ...+.+-+++-+-+.+.|++|- ...-|.|.++
T Consensus 391 ~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 4444 67788888887764222 333322222 22222 2233344444444455676653 3344555444
Q ss_pred --HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 008454 483 --FCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLR 548 (565)
Q Consensus 483 --~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 548 (565)
+...|++.++.-+-.-+.+ +.|+..+|..+.-++....++++|+.++..+ +|+..+++.
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 4567999988766555544 7899999999999999999999999999876 455544443
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.42 E-value=0.0038 Score=61.10 Aligned_cols=91 Identities=7% Similarity=-0.027 Sum_probs=54.8
Q ss_pred HHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 008454 147 LHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLP 226 (565)
Q Consensus 147 ~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 226 (565)
...+...|++++|..+++++++. .+.++..|..+..+|.+.|++++|+..++++.+.+..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~-------------------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~- 68 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL-------------------DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS- 68 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 34444556666666666666655 3345556666666666666666666666666665432
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
+...|..+..+|...|++++|+..|+...+.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 4555666666666666666666666666554
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.41 E-value=0.0082 Score=52.13 Aligned_cols=95 Identities=7% Similarity=-0.068 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (565)
.....+..+...+...|++++|...+++.++...- .+.....+..+...+.+.|++++|+..++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEED----------------PNDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc----------------cchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556677777777888888888888887765210 01123567778888888888888888888
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHH
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSERVDIALG 249 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~ 249 (565)
+..+.... +...+..+...+...|+...+..
T Consensus 97 ~al~~~p~-~~~~~~~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 97 QALELNPK-QPSALNNIAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHhCcc-cHHHHHHHHHHHHHcCChHhHhh
Confidence 88775433 45666667777777666544443
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.40 E-value=0.0031 Score=54.59 Aligned_cols=83 Identities=5% Similarity=-0.124 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
...+..++..+...|++++|...+++.+....- ....+.++..+...|...|++++|++.+++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~----------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID----------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc----------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555566666667777777777666554210 0012235566666666667777777766666
Q ss_pred HHCCCCcCHHHHHHHHHHHH
Q 008454 220 RDYGFLPIIESCNKFLSSLL 239 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~ 239 (565)
...... ....++.+...+.
T Consensus 99 l~~~~~-~~~~~~~la~i~~ 117 (168)
T CHL00033 99 LERNPF-LPQALNNMAVICH 117 (168)
T ss_pred HHhCcC-cHHHHHHHHHHHH
Confidence 654322 2344444444444
No 173
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.032 Score=53.20 Aligned_cols=260 Identities=15% Similarity=0.026 Sum_probs=126.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
....+.+..++.+|+..+....+.... ++..|..-+..+...+++++|+--.+.-.+... -....+.-.-+++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhHH
Confidence 345666778888999999888887754 566677667777777888887766655443210 011222223333333344
Q ss_pred HHHHHHHHHH---------------HHhCCC-CCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 279 IERAVEVFKN---------------MESMGF-IPSVTTYNTLI-SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIF 341 (565)
Q Consensus 279 ~~~a~~~~~~---------------m~~~g~-~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 341 (565)
..+|.+.++. +..... +|...+|..+- .++...|++++|.++--...+..- .+......--.
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~ 211 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGL 211 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chhHHHHhccc
Confidence 4444433331 111111 12223333221 334456666666666555555421 12222211122
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------------HHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHH
Q 008454 342 GFCKKGKLHEANRIFSEMKATNVSPNVVTYNT-------------LINGYGQVGNSEMGASLYEEMLRN---GIKVDILT 405 (565)
Q Consensus 342 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------------li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~ 405 (565)
++.-.++.+.+...|++....+ |+...-.. -..-..+.|++.+|.+.|.+.+.. +..++...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 3334556666666666665542 33221111 112234556666666666665543 23344455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH--HHHHhcCCHHHHHHHHHHHHHc
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNAS-TYSALI--TGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li--~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
|........+.|+.++|+.--++..+. |.. ....+. .++...+++++|.+-|+...+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555666666665555555442 222 111121 2233345555555555555543
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.37 E-value=0.00036 Score=52.32 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=53.0
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHH
Q 008454 117 QKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVF 196 (565)
Q Consensus 117 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (565)
.++++.|+.+|+.+....+..++...+..++.++.+.|++++|..++++ .+. .+.+....
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-------------------~~~~~~~~ 61 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-------------------DPSNPDIH 61 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-------------------HHCHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-------------------CCCCHHHH
Confidence 4577888888888777655322344555578888888888888888876 222 11233444
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~ 218 (565)
-.+..+|.+.|++++|+++|++
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhc
Confidence 4567778888888888887765
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.36 E-value=0.027 Score=53.29 Aligned_cols=172 Identities=12% Similarity=0.147 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLP-----IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMV 269 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 269 (565)
.|......|-..|++++|.+.|.+..+..... -...|......|.+. ++++|...+++.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A--------------- 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA--------------- 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH---------------
Confidence 34555566677777777777777664321100 011222222222222 444444443333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHH----CCCC-CCHHHHHHHHHHH
Q 008454 270 MHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNK-GLLSLAMKFKNLMEK----NGIQ-PNVITFNTLIFGF 343 (565)
Q Consensus 270 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~-~~~~~~~~li~~~ 343 (565)
+..|...|++..|-+++..+- ..|-.. |++++|.+.|++..+ .|.. --..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 344556666665555444432 334444 666777766665543 2210 0123345556667
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 344 CKKGKLHEANRIFSEMKATNVSP-----NVV-TYNTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 344 ~~~g~~~~A~~~~~~m~~~~~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
.+.|++++|.++|++....-... +.. .|...+-++...||...|.+.+++....
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777777665532211 111 1222333444556666666666666544
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.36 E-value=0.00048 Score=51.62 Aligned_cols=80 Identities=26% Similarity=0.300 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 452 KNSERAFQLYKSMIRSGCR-PNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKL 530 (565)
Q Consensus 452 ~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 530 (565)
|+++.|+.+++++.+..-. ++...+-.+..++.+.|++++|..++++ .+.+.. +....-.+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555554210 1223333355555555666666555555 211111 122233335555555666666555
Q ss_pred HHH
Q 008454 531 FRK 533 (565)
Q Consensus 531 ~~~ 533 (565)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 177
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.30 E-value=0.26 Score=50.34 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=70.5
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCc--------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY-GFLP--------IIESCNKFLSSLLDSERVDIALGFYKEMRRNRI 259 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p--------~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 259 (565)
..|.|..|..|...-...-.++.|...|-+...+ |++. +...-.+=+.+| -|++++|.++|-+|-++.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh-
Confidence 5678889988888888878888888888776554 3321 111112222222 388999999998886542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008454 260 SPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGF--IPSVTTYNTLISGHCNKGLLSLAMKFKNL 323 (565)
Q Consensus 260 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 323 (565)
..|..+.+.||+-...++++.=- .+. .--...|+.+...++....+++|.+++..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23445556666666555553210 000 01134455555555555555555555443
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.29 E-value=0.0063 Score=52.65 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVP--NASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
.|..++..+...|++++|...|+........+ ...+|..+...+...|++++|++.++..+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444445555555555555554332111 112444455555555555555555555554
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.29 E-value=0.0059 Score=57.79 Aligned_cols=266 Identities=14% Similarity=0.017 Sum_probs=160.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHcCCChHHHHHHHHHHH--H--CCC-CCCHHHHHHHH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPII----ESCNKFLSSLLDSERVDIALGFYKEMR--R--NRI-SPNVYTLNMVM 270 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~m~--~--~~~-~p~~~~~~~li 270 (565)
..-+++.|+....+.+|+...+.|-. |. ..|..|..+|.-.+++++|+++...=+ . .|- .-.......|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 45688999999999999999998765 43 346777778888888888887643211 0 010 00112222333
Q ss_pred HHHHHcCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHHhcCC--------------------hhHHHHHHHHH-
Q 008454 271 HAFCKLGIIERAVEVFKN----MESMGFI-PSVTTYNTLISGHCNKGL--------------------LSLAMKFKNLM- 324 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~----m~~~g~~-p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m- 324 (565)
..+--.|.+++|+..-.+ ..+.|-. .....+-.+...|...|+ ++.|.++|.+-
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 344445666666543222 1122211 123344445666655442 23344444322
Q ss_pred ---HHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 325 ---EKNGIQ-PNVITFNTLIFGFCKKGKLHEANRIFSEMK----ATNV-SPNVVTYNTLINGYGQVGNSEMGASLYEEML 395 (565)
Q Consensus 325 ---~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 395 (565)
.+.|-. .-..+|..|.+.|.-.|+++.|+..-+.-. +-|- ......+..+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 222211 123456677777778889999887654322 2231 1234567788889999999999999888654
Q ss_pred HC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 396 RN----GI-KVDILTYNALILGLCKEGKTKKAAYLVKDLDKN-----SLVPNASTYSALITGQCVRKNSERAFQLYKSMI 465 (565)
Q Consensus 396 ~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 465 (565)
.. |- .........|.+.|.-..++++|+.++..-... +..-....+.+|..+|...|..++|+.+....+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 32 22 234566778889998888999998888764321 111245578888999999999888887776655
Q ss_pred H
Q 008454 466 R 466 (565)
Q Consensus 466 ~ 466 (565)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 4
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.28 Score=50.10 Aligned_cols=130 Identities=8% Similarity=0.015 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (565)
|-++.|..++......-.++.|+..|-+.....++....++ ..+. +...-.+=+.+| -|++++|.++|-
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-~~i~--------s~~~q~aei~~~--~g~feeaek~yl 758 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-RTIH--------SKEQQRAEISAF--YGEFEEAEKLYL 758 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-hhhh--------hHHHHhHhHhhh--hcchhHhhhhhh
Confidence 45678888888888888888888877666554332211111 1111 011111112222 378888888887
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI--SPNVYTLNMVMHAFCKLGIIERAVEVFKN 288 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (565)
.|.++++. +..+.+.|++-.+.++++.-- .+. ..-...|+.+...+.....+++|.+.|..
T Consensus 759 d~drrDLA---------ielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 759 DADRRDLA---------IELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred ccchhhhh---------HHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77665432 344455555555555543210 000 00123455555555555555555555543
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.25 E-value=0.04 Score=49.21 Aligned_cols=182 Identities=12% Similarity=0.036 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFL--PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA 272 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 272 (565)
..-.....+...|++.+|++.|+.+...... --..+.-.++.++.+.|+++.|...+++..+.-+.-...-+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3334566777889999999999999875432 12456667788888999999999999988765322122223333333
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFI---PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL 349 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 349 (565)
.+......... ....... --...+..++.-|=......+|...+..+.+. =...--.+...|.+.|.+
T Consensus 87 ~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 87 LSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-H
T ss_pred HHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccH
Confidence 22211111110 0000000 00122333444444444445555444444331 011111244666777777
Q ss_pred HHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHH
Q 008454 350 HEANRIFSEMKATNVSPNV----VTYNTLINGYGQVGNSEMG 387 (565)
Q Consensus 350 ~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A 387 (565)
..|..-++.+.+. -|+. .....++.+|.+.|..+.+
T Consensus 158 ~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 158 KAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777776664 2222 3345566666666665533
No 182
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.23 E-value=0.031 Score=49.92 Aligned_cols=178 Identities=11% Similarity=0.090 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
+.+.+......+...|++.+|...|+.+... |+..+-.+.+.-.++.++.+.|+++.|...|+.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~----------------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~ 67 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR----------------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYER 67 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445566677778899999999999998877 233444556677889999999999999999999
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCC-------------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSE-------------RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEV 285 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~-------------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 285 (565)
..+.-..-...-+...+.+.+..+ ...+|...| ..++.-|=...-..+|...
T Consensus 68 fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~---------------~~li~~yP~S~y~~~A~~~ 132 (203)
T PF13525_consen 68 FIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEF---------------EELIKRYPNSEYAEEAKKR 132 (203)
T ss_dssp HHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHH---------------HHHHHH-TTSTTHHHHHHH
T ss_pred HHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHH---------------HHHHHHCcCchHHHHHHHH
Confidence 887643322222222222222111 122333333 3344444445555666665
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 008454 286 FKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN----VITFNTLIFGFCKKGKLHEAN 353 (565)
Q Consensus 286 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~ 353 (565)
+..+.+. =...-..+...|.+.|.+..|..-++.+.+. -|+ ......++.+|.+.|..+.+.
T Consensus 133 l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 133 LAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 5555432 0111123567789999999999999999876 233 234567778888888887543
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.22 E-value=0.039 Score=56.63 Aligned_cols=135 Identities=12% Similarity=0.071 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 008454 364 VSPNVVTYNTLINGYGQVG-----NSEMGASLYEEMLRNGIKVDILTYNALILGLCKEG--------KTKKAAYLVKDLD 430 (565)
Q Consensus 364 ~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~ 430 (565)
.+.|...|...+++..... +.+.|..+|++..+.... ....|..+..++.... ++..+.+......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456666666666643322 245666677766665322 2334444333332211 1122222222222
Q ss_pred hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 431 KNS-LVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 431 ~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
... ...+...|..+.-.....|++++|...++++++.+ |+...|..+...+...|+.++|.+.++++.+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 211 11233444444444444555555555555555542 4555555555555555555555555555554
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.20 E-value=0.017 Score=54.75 Aligned_cols=174 Identities=11% Similarity=0.128 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCC---ChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 142 THSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDS---SPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 142 ~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
.|......+-..+++++|.+.+.+..+.. ..... ....|......|.+. ++++|++.+++
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~----------------~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~ 99 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCY----------------EKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK 99 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHH----------------HHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHH----------------HHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH
Confidence 44455556667778887777777665431 00000 112233333333333 55555555554
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC----C
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL-GIIERAVEVFKNMESM----G 293 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----g 293 (565)
. +..|...|++..|-..+.++-+ .|-.. |++++|++.|++..+. |
T Consensus 100 A---------------~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 100 A---------------IEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEG 149 (282)
T ss_dssp H---------------HHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT
T ss_pred H---------------HHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 4 4556666776666665555432 23334 5666666666655432 2
Q ss_pred CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 294 FI-PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP-----NVI-TFNTLIFGFCKKGKLHEANRIFSEMKAT 362 (565)
Q Consensus 294 ~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 362 (565)
.. --..++..+...+.+.|++++|.++|+++....... +.. .+...+-++...||...|.+.+++....
T Consensus 150 ~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 150 SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 10 012344556677788888888888888877643221 121 2223344566678888888888887654
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.12 Score=46.29 Aligned_cols=132 Identities=14% Similarity=0.118 Sum_probs=79.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----
Q 008454 230 SCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLI---- 305 (565)
Q Consensus 230 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li---- 305 (565)
+.+.++..+...|.+.-..+++++.++...+.+......+++.-.+.||.+.|...|++..+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666667777777777777776555666667777777777777777777777666543333333333332
Q ss_pred -HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 306 -SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT 362 (565)
Q Consensus 306 -~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 362 (565)
..|.-.+++.+|...+.+...... .|+...|.-.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334445666666666666655432 24444444433444456677777777777664
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.14 E-value=0.054 Score=55.62 Aligned_cols=145 Identities=13% Similarity=0.112 Sum_probs=99.7
Q ss_pred CCCCCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------ChHHHHHHHH
Q 008454 327 NGIQPNVITFNTLIFGFCK--KG---KLHEANRIFSEMKATNVSPN-VVTYNTLINGYGQVG--------NSEMGASLYE 392 (565)
Q Consensus 327 ~g~~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g--------~~~~A~~~~~ 392 (565)
.+.+.+...|...+.+... .+ +.+.|..+|++..+.. |+ ...|..+..++.... +...+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456688888888877543 22 3678999999988863 44 445555444443321 1223333344
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008454 393 EMLRN-GIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRP 471 (565)
Q Consensus 393 ~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 471 (565)
+.... ....+...|.++.......|++++|...++++.+.+ |+...|..+...+...|+.++|.+.++++... .|
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 33332 233456778888777778899999999999998865 67888999999999999999999999999876 45
Q ss_pred CHHHHH
Q 008454 472 NKHIFE 477 (565)
Q Consensus 472 ~~~~~~ 477 (565)
...+|.
T Consensus 485 ~~pt~~ 490 (517)
T PRK10153 485 GENTLY 490 (517)
T ss_pred CCchHH
Confidence 555544
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.14 E-value=0.018 Score=45.97 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=25.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPN--ASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++...
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444555555555555544443322 11233334444444555555555544443
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.12 E-value=0.002 Score=45.88 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=16.7
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 190 DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
|.+..+...++.+|.+.|++++|.++++.+...
T Consensus 22 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 22 PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555543
No 189
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.29 Score=46.91 Aligned_cols=259 Identities=11% Similarity=-0.007 Sum_probs=150.9
Q ss_pred HHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 008454 148 HILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI 227 (565)
Q Consensus 148 ~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 227 (565)
..+.+...+..|+..+...++. |+.+..-|..-+..+...|++++|.--.+.-.+.... .
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~-------------------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~ 116 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDM-------------------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-F 116 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHh-------------------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-c
Confidence 3344566667777777777666 4445555555555666666666666555444332110 0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHH------------HHHH---HHCCC-CCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Q 008454 228 IESCNKFLSSLLDSERVDIALGF------------YKEM---RRNRI-SPNVYTLNMVM-HAFCKLGIIERAVEVFKNME 290 (565)
Q Consensus 228 ~~~~~~ll~~~~~~~~~~~A~~~------------~~~m---~~~~~-~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~ 290 (565)
.......-+.+...+...+|.+. +... ..... +|.-.++..+- .++.-.|+.++|.++--.+.
T Consensus 117 ~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 117 SKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred cccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 11111111222222222222222 2221 11111 23334444332 34556789999998887777
Q ss_pred hCCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHHHHcCCHHHHHHH
Q 008454 291 SMGFIPSVTTYNTLIS--GHCNKGLLSLAMKFKNLMEKNGIQPNVITFN-------------TLIFGFCKKGKLHEANRI 355 (565)
Q Consensus 291 ~~g~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-------------~li~~~~~~g~~~~A~~~ 355 (565)
+.. ....+..+++ ++.-.++.+.+..-|++....+ |+-..-. .-.+-..+.|.+..|.+.
T Consensus 197 kld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 197 KLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred hcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 653 2223333443 3445778899999999888764 4433221 113446788999999999
Q ss_pred HHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 356 FSEMKAT---NVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 356 ~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
|.+.... ...++...|.....+..+.|+..+|+.--+...+.+.. =...|..-..++.-.+++++|.+-++...+.
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998874 35566677777788888999999999998888874211 1223334445566678899999888887764
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.04 Score=50.66 Aligned_cols=99 Identities=16% Similarity=0.089 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008454 437 NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNE---DFDRAAEVLLEMLEKCMAPDSIILSE 513 (565)
Q Consensus 437 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~ 513 (565)
|...|..|...|...|+++.|..-|.+..+.. .++...+..+..++.... ...++..+|++++..+ +-|......
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 66677777777777777777777777777653 455555555555544332 3556677777776653 225556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 514 LYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 514 li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
|...+...|++++|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 666777777777777777777655
No 191
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.01 Score=54.20 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=84.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008454 376 NGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSE 455 (565)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 455 (565)
.-+.+.+++++|+..|.+.++.... |.+-|..=..+|++.|.++.|++-.+.....+.. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 4566789999999999999997543 7778888899999999999999888888775432 4558999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 456 RAFQLYKSMIRSGCRPNKHIFEMLMST 482 (565)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~ 482 (565)
+|++.|++.++. .|+-.+|..=+..
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHHH
Confidence 999999999875 6777776654443
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.23 Score=44.59 Aligned_cols=239 Identities=15% Similarity=0.149 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHH-HHH--HHHhcCChHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDL-LFK--TYAHRKKFRNATDTF 216 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-li~--~~~~~g~~~~A~~~~ 216 (565)
...+..-+.++.+.+.+++|..-++.+-+. +.+.-.|+...+.|+...++-+-|.. ++. +....|...+.+.-+
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~l---D~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl 145 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNL---DQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRL 145 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccC---CCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 344556678888999999888776665443 33444444333334333333222221 111 122334444444433
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 217 CQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIP 296 (565)
Q Consensus 217 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 296 (565)
..+.. ....++..+......+.-+++|++-. ....+.++..+.-.|.+.-...++.+.++...+.
T Consensus 146 ~~L~~--------~V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~ 210 (366)
T KOG2796|consen 146 HKLKT--------VVSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ 210 (366)
T ss_pred HHHHH--------HHHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc
Confidence 33322 01112222222222233344443322 1234455555555666666666666666655455
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTL-----IFGFCKKGKLHEANRIFSEMKATNVSPNVVTY 371 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 371 (565)
+......|++...+.|+.+.|..+|++..+..-..|..+.+.+ ...|.-.+++.+|...+.+....+ +.|....
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~ 289 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVAN 289 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhh
Confidence 5566666666666666666666666655543222222222222 223334445555555555554432 2233333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
|.-.-+..-.|+...|.+.++.|.+.
T Consensus 290 NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 32222222345555555555555543
No 193
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.02 E-value=0.017 Score=52.80 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=58.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 202 TYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIER 281 (565)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 281 (565)
-+.+.++|++|+..|.+.++.... |.+.|..-..+|.+.|.++.|++-.+..+..+. --..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHHH
Confidence 344556666666666666665533 556666666666666666666666666554321 123456666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH
Q 008454 282 AVEVFKNMESMGFIPSVTTYNTLI 305 (565)
Q Consensus 282 a~~~~~~m~~~g~~p~~~~~~~li 305 (565)
|++.|++.++. .|+-.+|-.=+
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHH
Confidence 66666666553 45554554433
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.00 E-value=0.057 Score=43.15 Aligned_cols=106 Identities=17% Similarity=0.084 Sum_probs=64.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHH
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPI--IESCNKFLSSLLDSERVDIALGFYKEMRRNRIS--PNVYTLNMVMHAFC 274 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~ 274 (565)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.++++....... -+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566677888888888888888776533 345666777777788888888888777654211 01122222333556
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008454 275 KLGIIERAVEVFKNMESMGFIPSVTTYNTLISGH 308 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 308 (565)
..|+.++|++.+-.... ++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 67777777777665443 2333444444444
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.97 E-value=0.19 Score=42.68 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=82.0
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHH
Q 008454 226 PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI-PSVTTYNTL 304 (565)
Q Consensus 226 p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l 304 (565)
|++..--.|..++.+.|+..+|...|++...--...|....-.+.++....+++..|...++++-+.... .+..+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 5666666677777777777777777777764334456666666777777777777777777776654210 112233445
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 305 ISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEM 359 (565)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 359 (565)
...+...|.+..|..-|+..... -|+...-......+.+.|+.+++..-+.++
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 66677777777777777777765 344444334445556666665555444433
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.97 E-value=0.23 Score=50.20 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=16.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 008454 481 STFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
.+|-+.|+..+|.++++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 3566778888888888887653
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.92 E-value=0.003 Score=44.94 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=31.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 205 HRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
+.|++++|++.|+.+...... +...+..+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666666666666665433 5566666666666666666666666666554
No 198
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.88 E-value=0.27 Score=47.53 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 335 TFNTLIFGFCKKGKLHEANRIFSEMKATN---VSPNVVTYNTLINGYGQ---VGNSEMGASLYEEMLRNGIKVDILTYNA 408 (565)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 408 (565)
+...++-.|-...+++..+++.+.+...- +.-....-....-++.+ .|+.++|.+++..+......++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33445556777777888888887776541 11122222233344455 6777777777777665555667777776
Q ss_pred HHHHHH
Q 008454 409 LILGLC 414 (565)
Q Consensus 409 li~~~~ 414 (565)
+...|-
T Consensus 223 ~GRIyK 228 (374)
T PF13281_consen 223 LGRIYK 228 (374)
T ss_pred HHHHHH
Confidence 666553
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.87 E-value=0.0045 Score=43.58 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=32.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
...+.+.|++++|+..|+.+.+.... +...+..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555566666666666666655522 455566666666666666666666666554
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.85 E-value=0.0071 Score=42.55 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=19.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMI 465 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 465 (565)
+.+.|++++|...|+++.+.... +...+..+..++...|++++|...|++++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33334444444444444333211 23333333333334444444444444333
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.82 E-value=0.029 Score=47.16 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHhhHH
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME-----IRGLLPKGFDKL 547 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 547 (565)
.+...++..+...|++++|..+++.+.... +-+...|..+|.+|...|+..+|.++|+++. +.|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345566777788999999999999998873 4477889999999999999999999998875 348888876543
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.79 E-value=0.27 Score=41.74 Aligned_cols=134 Identities=12% Similarity=0.095 Sum_probs=88.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHH
Q 008454 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV-PNASTYSA 443 (565)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ 443 (565)
.|++..-..|..+....|+..+|...|.+....-+.-|......+.++....++...|...++.+.+.... -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555566677777778888888888887776655667777777777777788888888877777664311 01223445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 444 LITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEML 500 (565)
Q Consensus 444 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 500 (565)
+.+.+...|.+..|..-|+..+.. .|+...-......+.+.|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 667777778888888888877765 4555544444455667776666655544443
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.78 E-value=0.006 Score=43.52 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSE-RVDIALGFYKEMRR 256 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~ 256 (565)
+.+|..+...+...|++++|+..|++..+.+.. +...|..+..++...| ++++|++.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344555555666666666666666666555432 4555555556666665 46666666555543
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.77 E-value=0.027 Score=52.20 Aligned_cols=89 Identities=10% Similarity=-0.006 Sum_probs=40.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCH
Q 008454 204 AHRKKFRNATDTFCQMRDYGFLPI--IESCNKFLSSLLDSERVDIALGFYKEMRRNRI--SPNVYTLNMVMHAFCKLGII 279 (565)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~ 279 (565)
.+.|++++|+..|+.+.+...... ..++..+...|...|++++|...|+.+.+.-. +.....+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334555555555555544332110 23444455555555555555555555543211 01122333334444455555
Q ss_pred HHHHHHHHHHHhC
Q 008454 280 ERAVEVFKNMESM 292 (565)
Q Consensus 280 ~~a~~~~~~m~~~ 292 (565)
++|.++|+.+.+.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.097 Score=48.20 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008454 402 DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR---KNSERAFQLYKSMIRSGCRPNKHIFEM 478 (565)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~ 478 (565)
|...|-.|...|...|+.+.|..-|.+..+.... +...+..+..++... ....++.++|++++... +-|..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 5555555666666666666666555555543222 444444444433322 22345556666665543 334444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 479 LMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
|...+...|++.+|...|+.|++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555666666666666666554
No 206
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.77 E-value=0.0088 Score=42.65 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNE-DFDRAAEVLLEML 500 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~ 500 (565)
.|..+...+...|++++|+..|++.++.. +-+...|..+..++...| ++++|.+.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444432 223334444444444444 3444444444443
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.67 E-value=0.64 Score=44.38 Aligned_cols=280 Identities=13% Similarity=0.080 Sum_probs=172.6
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCh
Q 008454 241 SERVDIALGFYKEMRRNRISPNVYTLNMVMHA--FCKLGIIERAVEVFKNMESMGFIPSVTTYN----TLISGHCNKGLL 314 (565)
Q Consensus 241 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~ 314 (565)
.|+-..|.++-.+-.+. +..|..-.-.++.+ -.-.|+++.|.+-|+.|.. |..+-. .|.-...+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 45666666665554321 23344444444433 2346899999999999886 333322 233334567888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHHh---cCChHHHH
Q 008454 315 SLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN-VSPNVVT--YNTLINGYGQ---VGNSEMGA 388 (565)
Q Consensus 315 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~--~~~li~~~~~---~g~~~~A~ 388 (565)
+.|..+-+..-..-.. -...+...+...|..|+|+.|+++++.-.... +.++..- -..|+.+-.. ..+...|.
T Consensus 171 eaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 8888888877665322 35677888899999999999999998766532 2333322 1223322111 22455555
Q ss_pred HHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 389 SLYEEMLRNGIKVDILT-YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 389 ~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
..-.+..+ ..||..- --.-..++.+.|+..++-.+++.+-+....|+. +. +..+.+.|+ .+..-+++....
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHH
Confidence 55444444 3444322 233456788999999999999999887655553 22 223445554 344333333321
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 008454 468 -GCRP-NKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHC-GKDELAMKLFRKMEIR 537 (565)
Q Consensus 468 -~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 537 (565)
.++| +....-.+..+-...|++..|..--+...+ ..|....|-.|.+.-... |+-.++..++.+..+.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1233 456666777778888999888777666655 467888888887766554 9999999988887655
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.66 E-value=0.038 Score=51.23 Aligned_cols=88 Identities=9% Similarity=0.050 Sum_probs=37.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCH
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVPN--ASTYSALITGQCVRKNSERAFQLYKSMIRSG--CRPNKHIFEMLMSTFCQNEDF 489 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~ 489 (565)
.+.|++++|...|+.+.+....-. ...+-.+...|...|++++|...|+.+++.- -+.....+-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555544321100 1234444444455555555555555554320 001122223333334444555
Q ss_pred HHHHHHHHHHHH
Q 008454 490 DRAAEVLLEMLE 501 (565)
Q Consensus 490 ~~A~~~~~~~~~ 501 (565)
++|..+|+++++
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555544444
No 209
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.66 E-value=0.66 Score=44.46 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008454 370 TYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQC 449 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 449 (565)
+.+..|.-+...|+...|.++-.+.. .||..-|..-+.+|+..+++++-..+... + -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 44555666777888888777766552 36888888899999999999877765432 1 24466888899999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 450 VRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVL 496 (565)
Q Consensus 450 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (565)
+.|+..+|..+...+ + +..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 999988888887762 1 244566788889998887764
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.60 E-value=0.71 Score=44.10 Aligned_cols=308 Identities=11% Similarity=0.088 Sum_probs=168.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH--hCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILT--KNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
..+..+.+.|....+..+ |..+...+. ..|+-..|+.+-.+..+. ...|..-
T Consensus 67 ~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-------------------lssDqep 120 (531)
T COG3898 67 ESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-------------------LSSDQEP 120 (531)
T ss_pred hCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-------------------hhccchH
Confidence 355666677765555433 555544444 446767777665554332 1112222
Q ss_pred HHHH--HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH----HHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 196 FDLL--FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSS----LLDSERVDIALGFYKEMRRNRISPNVYTLNMV 269 (565)
Q Consensus 196 ~~~l--i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 269 (565)
.-.| .++-.-.|+++.|.+-|+.|.+ |.++-..=+++ --+.|..+.|...-+..-+.- +--.+.+...
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~At 194 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARAT 194 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHH
Confidence 2222 3344456899999999999986 44443332232 335677888877777765432 2235677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 008454 270 MHAFCKLGIIERAVEVFKNMESMG-FIPSVTT--YNTLISGHC---NKGLLSLAMKFKNLMEKNGIQPNVITFN-TLIFG 342 (565)
Q Consensus 270 i~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~--~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~ 342 (565)
+...|..|+++.|+++++.-.... +.++..- -..|+.+-. -..+...|...-.+..+ +.|+.+--. .-..+
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAra 272 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARA 272 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHH
Confidence 888899999999999888765442 2333321 112222111 11234444444444333 344543322 23467
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 008454 343 FCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN-GIKV-DILTYNALILGLCKEGKTK 420 (565)
Q Consensus 343 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~-~~~~~~~li~~~~~~g~~~ 420 (565)
+.+.|+..++-.+++.+-+....|+. + .+..+.+.|+. +..-++...+. ..+| +......+..+-...|++.
T Consensus 273 lf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 273 LFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 77788888888888887776434432 2 22233344443 33333332211 1222 4455556666666777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc
Q 008454 421 KAAYLVKDLDKNSLVPNASTYSALITGQCV-RKNSERAFQLYKSMIRS 467 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~ 467 (565)
.|..--+..... .|....|-.|...-.. .|+-.++...+.+.+..
T Consensus 347 ~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 347 AARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 666555555432 4666666666655433 37777777777766653
No 211
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=1.7 Score=45.87 Aligned_cols=184 Identities=15% Similarity=0.192 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
.......-+..+.+...++.|..+...-... ... -..........+.+.|++++|.+-|-+
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d------~d~-------------~~~i~~kYgd~Ly~Kgdf~~A~~qYI~ 393 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQHLD------EDT-------------LAEIHRKYGDYLYGKGDFDEATDQYIE 393 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhcCCC------HHH-------------HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3445566788888888888887766432111 011 112334455667789999999998877
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI-PS 297 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~ 297 (565)
....- .| ..++.-|....+...-...++.+.+.|+. +...-..|+.+|.+.++.++-.+..+.-. .|.. -|
T Consensus 394 tI~~l-e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd 465 (933)
T KOG2114|consen 394 TIGFL-EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD 465 (933)
T ss_pred HcccC-Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee
Confidence 66531 12 23566777778888888899999988875 66777889999999999998887776655 3322 12
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMK 360 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 360 (565)
....+..+.+.+-.++|..+-..... +......+ +-..+++++|++++..+.
T Consensus 466 ---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 466 ---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred ---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 23466667777777777766655443 23333333 345678888888887653
No 212
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.38 E-value=1.1 Score=43.69 Aligned_cols=143 Identities=12% Similarity=0.128 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 008454 403 ILTYNALILGLCKEGKTKKAAYLVKDLDKNS-LVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIF-EMLM 480 (565)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~li 480 (565)
..+|...++...+..-++.|..+|-++.+.+ ..+++..++++|..++ .|+...|..+|+--+.+ .||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456777888888888999999999999988 5667778899888665 57778899999877765 4565554 4566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHh
Q 008454 481 STFCQNEDFDRAAEVLLEMLEKCMAPD--SIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTIN 551 (565)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 551 (565)
.-+...++-+.|..+|+..+++ +..+ ..+|..+|.--..-|+...+..+-++|.+. .|...+.....+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~S 543 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTS 543 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHH
Confidence 6777889999999999977665 3334 468999999889999998888888887553 344433333333
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.37 E-value=0.2 Score=42.04 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEML-----EKCMAPDSIIL 511 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~ 511 (565)
....++..+...|++++|..+.+.++... +-+...|..+|.++...|+..+|.++|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34556666777888888888888888765 5677788888888888888888888887764 34777776653
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=96.33 E-value=0.36 Score=40.53 Aligned_cols=90 Identities=12% Similarity=0.045 Sum_probs=53.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDF 489 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 489 (565)
..-+...|++++|..+|.-+...+.. +..-|..|..++-..+++++|+..|......+ .-|...+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 33345566777777777666554443 45555556666666666777776666655543 23333344455566666777
Q ss_pred HHHHHHHHHHHH
Q 008454 490 DRAAEVLLEMLE 501 (565)
Q Consensus 490 ~~A~~~~~~~~~ 501 (565)
+.|...|+..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 777776666655
No 215
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.56 Score=41.79 Aligned_cols=208 Identities=10% Similarity=0.060 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
-...|..-..++-..++|+.|...+.+..+... ..+.+|. - .+-++.|.-+.++
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yE--nnrslfh------------------A------AKayEqaamLake 83 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYE--NNRSLFH------------------A------AKAYEQAAMLAKE 83 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH--hcccHHH------------------H------HHHHHHHHHHHHH
Confidence 345666677777788899999888877765311 1111111 1 1233444444555
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---C--
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM---G-- 293 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g-- 293 (565)
+.+.. --+..|+.-...|..+|..+.|-..++..-+ ..+.-+.++|+++|++.... +
T Consensus 84 ~~kls--Evvdl~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr 145 (308)
T KOG1585|consen 84 LSKLS--EVVDLYEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDR 145 (308)
T ss_pred HHHhH--HHHHHHHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccch
Confidence 44421 1234455556677777777777666665432 11233445555555543221 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CC
Q 008454 294 FIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNG----IQPN-VITFNTLIFGFCKKGKLHEANRIFSEMKATN---VS 365 (565)
Q Consensus 294 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~ 365 (565)
...-...|..+-..+.+...+++|-..+.+-.... --++ -..|-..|-.+.-..++..|.+.++.-.+.+ -+
T Consensus 146 ~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s 225 (308)
T KOG1585|consen 146 DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS 225 (308)
T ss_pred HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh
Confidence 00112233344455666666666655444322110 0111 1224444455555667777777777644432 22
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHH
Q 008454 366 PNVVTYNTLINGYGQVGNSEMGASLY 391 (565)
Q Consensus 366 ~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (565)
-+..+...|+.+| ..||.+++.+++
T Consensus 226 ed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 226 EDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3455666666665 456666665544
No 216
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.32 E-value=0.79 Score=41.44 Aligned_cols=179 Identities=12% Similarity=0.115 Sum_probs=100.3
Q ss_pred HhhcCChHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCC
Q 008454 114 LKVQKDYVLSLEFFTWVQTHKPSSL-TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSS 192 (565)
Q Consensus 114 ~~~~~~~~~al~~f~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (565)
....+++..|.+.|+.+.++.|+.+ ...+.-.++-+.-+.+++++|...++++++.. +..+.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----------------P~~~n~ 107 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----------------PTHPNA 107 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----------------CCCCCh
Confidence 3456799999999999999887643 56777778888899999999999999999872 222222
Q ss_pred hHHHHHHHHHHHhc-------CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH
Q 008454 193 PLVFDLLFKTYAHR-------KKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYT 265 (565)
Q Consensus 193 ~~~~~~li~~~~~~-------g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 265 (565)
-|..-|.+++.- .|...+.+.|..+.+ ++.-|-...-..+|......+... =...
T Consensus 108 --dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~ 169 (254)
T COG4105 108 --DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGH 169 (254)
T ss_pred --hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHH
Confidence 233334444311 222222222222221 222222222233333333322210 0001
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008454 266 LNMVMHAFCKLGIIERAVEVFKNMESMGFIPS---VTTYNTLISGHCNKGLLSLAMKFKNLMEKN 327 (565)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 327 (565)
=..+.+.|.+.|.+..|..-++.|.+. .+-+ ...+-.+..+|...|-.++|.+.-.-+..+
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 123445667777777777777777765 2212 233444556677777777776666655544
No 217
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.25 E-value=0.86 Score=41.21 Aligned_cols=81 Identities=7% Similarity=-0.095 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
+..-+......|++++|...|+.+.... +..+-...+--.++.++.+.+++++|+..+++....
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~----------------p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRH----------------PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3334444556777777777777776552 222334455556667777778888888877777665
Q ss_pred CCCcCHHHHHHHHHHHH
Q 008454 223 GFLPIIESCNKFLSSLL 239 (565)
Q Consensus 223 ~~~p~~~~~~~ll~~~~ 239 (565)
........|-..|.+++
T Consensus 101 yP~~~n~dY~~YlkgLs 117 (254)
T COG4105 101 YPTHPNADYAYYLKGLS 117 (254)
T ss_pred CCCCCChhHHHHHHHHH
Confidence 43322333444444444
No 218
>PRK15331 chaperone protein SicA; Provisional
Probab=96.18 E-value=0.21 Score=41.91 Aligned_cols=89 Identities=16% Similarity=0.007 Sum_probs=55.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 341 FGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTK 420 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (565)
.-+...|++++|..+|.-+.-.+ .-|..-+..|..++-..+++++|...|......+. -|...+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 33456677777777777666543 33444455556666666777777777766655443 24444555666777777777
Q ss_pred HHHHHHHHHHh
Q 008454 421 KAAYLVKDLDK 431 (565)
Q Consensus 421 ~A~~~~~~~~~ 431 (565)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777776665
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.17 E-value=0.032 Score=40.21 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=27.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 202 TYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
.|.+.+++++|+++++.+...+.. +...|......+.+.|++++|...|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344445555555555555544332 4444444555555555555555555555443
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=1.2 Score=41.18 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=70.2
Q ss_pred HHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 008454 148 HILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI 227 (565)
Q Consensus 148 ~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 227 (565)
.-+...+++.+|..+|...... .+.+..+--.++.+|...|+++.|..++..+....-...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~-------------------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~ 202 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA-------------------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA 202 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh-------------------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH
Confidence 3444556666666666666554 233445555667777777777777777776654321111
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHH
Q 008454 228 IESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM--GFIPSVTTYNTLI 305 (565)
Q Consensus 228 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li 305 (565)
......-+..+.+.....+..++-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.++ |.. |...-..|+
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~ll 279 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLL 279 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHH
Confidence 111112233333333333333333333221 124455555555666666666666655554433 222 334444455
Q ss_pred HHHHhcC
Q 008454 306 SGHCNKG 312 (565)
Q Consensus 306 ~~~~~~g 312 (565)
..+.-.|
T Consensus 280 e~f~~~g 286 (304)
T COG3118 280 ELFEAFG 286 (304)
T ss_pred HHHHhcC
Confidence 5444444
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.03 E-value=0.023 Score=41.64 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 475 IFEMLMSTFCQNEDFDRAAEVLLEMLEK--CMA---PD-SIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
+|+.+...|...|++++|+..+++.++. ... |+ ..++..+..++...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555555432 011 11 234555555555566666666555554
No 222
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.02 E-value=0.24 Score=49.70 Aligned_cols=168 Identities=11% Similarity=0.058 Sum_probs=92.7
Q ss_pred CCChHHHHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHH
Q 008454 103 HLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSI 182 (565)
Q Consensus 103 ~l~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~ 182 (565)
.+++..+.--....++++..+++...--.--+ .........++..|.+.|..+.|+.+...-.
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------------- 322 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVTDPD--------------- 322 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------------
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcCChH---------------
Confidence 55666666666677788877665553111111 1234557777888888888888777653211
Q ss_pred HHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 008454 183 LYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN 262 (565)
Q Consensus 183 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~ 262 (565)
.-.....+.|+++.|.++.++. .+...|..|.....+.|+++.|.+.|.+..
T Consensus 323 ---------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------- 374 (443)
T PF04053_consen 323 ---------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK------- 374 (443)
T ss_dssp ---------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------
T ss_pred ---------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-------
Confidence 1234445567777776654433 256677777777777777777777776653
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008454 263 VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNL 323 (565)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 323 (565)
-|..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 375 --d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 375 --DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred --CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 245566666677777766666666665542 33444445555666666655543
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.02 E-value=0.12 Score=41.73 Aligned_cols=82 Identities=12% Similarity=0.047 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 437 NASTYSALITGQCVRKNSERAFQLYKSMIRS---------------GCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 437 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
|..++..+|.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567777888888888877777777654321 1235555666666666666666666666655543
Q ss_pred c-CCCCCHHHHHHHHHHH
Q 008454 502 K-CMAPDSIILSELYSGL 518 (565)
Q Consensus 502 ~-~~~p~~~~~~~li~~~ 518 (565)
. +++.+..+|..|++-.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 2 4555555566555543
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.00 E-value=0.055 Score=38.94 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=22.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 448 QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 448 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
|.+.+++++|.++++.++..+ +.+...+.....++.+.|++++|.+.+++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444444444444432 22333333344444444444444444444443
No 225
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.92 E-value=0.15 Score=46.31 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 142 THSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRD 221 (565)
Q Consensus 142 ~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 221 (565)
.|..-+ -+.+.|++..|...|...++. |+.....+..+.-|..++...|++++|..+|..+.+
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~----------------YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKK----------------YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHc----------------CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 444433 445677788888888888887 344555666777788888888888888888888866
Q ss_pred CCCC-c-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 222 YGFL-P-IIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 222 ~~~~-p-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
.... | -++++--|.....+.|+.++|...|+++.+.
T Consensus 207 ~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 207 DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5322 2 3467777788888888888888888888764
No 226
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.81 E-value=3.9 Score=45.04 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCC--ChHHHHHHHHHHHH
Q 008454 229 ESCNKFLSSLLDSE--RVDIALGFYKEMRR 256 (565)
Q Consensus 229 ~~~~~ll~~~~~~~--~~~~A~~~~~~m~~ 256 (565)
.....++.+|++.+ ..+.|+....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 44556677777766 56666666666553
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.80 E-value=0.17 Score=40.94 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 008454 329 IQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT-NVSPNVVTYNTLING 377 (565)
Q Consensus 329 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~ 377 (565)
..|+..+..+++.+|+..|++..|+++++...+. +++.+..+|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3445555555555555555555555555544332 344444445544443
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.76 E-value=0.79 Score=36.65 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=20.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSG 468 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 468 (565)
..+...|+-++-.+++.++.+ +-.+++...-.+..+|.+.|+..++-+++.++-++|
T Consensus 94 d~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333344444444444444332 112333334444444444444444444444444333
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.72 E-value=0.036 Score=40.56 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRS--GCR---PN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
+|+.+...|...|++++|+..|++.++. ... |+ ..++..+..++...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666666666666666666542 011 11 34566666667777777777777766543
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=0.25 Score=44.94 Aligned_cols=97 Identities=11% Similarity=0.078 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC-CCC-HHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFL--PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI-SPN-VYTLNMVM 270 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~~~~~~li 270 (565)
.|+.-+. +.+.|++..|.+.|....+.... -...++-.|...+...|++++|...|..+.+.-. .|. ...+.-|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5555444 45678899999999999987643 1356677799999999999999999999976422 222 36777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 008454 271 HAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8889999999999999999876
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.65 E-value=0.18 Score=49.54 Aligned_cols=68 Identities=9% Similarity=-0.122 Sum_probs=57.7
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPII---ESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
.+.++..++.+..+|.+.|++++|+..|++..+.+.. +. .+|..+..+|...|+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999887633 23 35889999999999999999999998874
No 232
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.60 E-value=1.3 Score=45.21 Aligned_cols=206 Identities=13% Similarity=0.144 Sum_probs=100.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----
Q 008454 282 AVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIF----- 356 (565)
Q Consensus 282 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----- 356 (565)
.+.-++++.++|-.|+... +...++-.|.+.+|-++|.+- |.. +..++.|...+.+|.|.+++
T Consensus 619 li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~ 686 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDP 686 (1081)
T ss_pred HHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCCh
Confidence 3344566777777777653 345566677777777777542 221 11233344444444443333
Q ss_pred -------HHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH------HHHCCC---CCCHHHHHHHHHHHHHcCC
Q 008454 357 -------SEMKAT--NVSPNVVTYNTLINGYGQVGNSEMGASLYEE------MLRNGI---KVDILTYNALILGLCKEGK 418 (565)
Q Consensus 357 -------~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~~~---~~~~~~~~~li~~~~~~g~ 418 (565)
++--+. .+.-. .+....+...|+.++|..+.-+ +.+-+. ..+..+...+..-+.+...
T Consensus 687 ~eKKmL~RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~ 762 (1081)
T KOG1538|consen 687 KEKKMLIRKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDS 762 (1081)
T ss_pred HHHHHHHHHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccc
Confidence 211110 11111 1233444556777666654321 111111 1233344444444444555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 419 TKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 419 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
+.-|.++|..|-. ...+++.....+++.+|+.+-+..-+. .|| +|....+.++...++++|.+
T Consensus 763 ~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaqwLAE~DrFeEAqk---- 825 (1081)
T KOG1538|consen 763 PGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQWLAENDRFEEAQK---- 825 (1081)
T ss_pred cchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHHHhhhhhhHHHHHH----
Confidence 5556666655532 123445555666666666665544332 232 23333334444555555544
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008454 499 MLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 499 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 538 (565)
+|.++|+.+||.++++++....
T Consensus 826 ------------------AfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 826 ------------------AFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred ------------------HHHHhcchHHHHHHHHHhhhhh
Confidence 5666788888888888876543
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.53 E-value=2.6 Score=41.01 Aligned_cols=20 Identities=5% Similarity=0.311 Sum_probs=10.9
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 008454 272 AFCKLGIIERAVEVFKNMES 291 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~ 291 (565)
.|....+++..+++++.+..
T Consensus 150 SyRdiqdydamI~Lve~l~~ 169 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEA 169 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhc
Confidence 45555555555555555554
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.43 E-value=0.15 Score=46.23 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 315 SLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK 348 (565)
Q Consensus 315 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 348 (565)
+-+.+++++|...|+.||-.+-..+++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 4466777788888887887777777777776664
No 235
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=4.1 Score=42.55 Aligned_cols=313 Identities=12% Similarity=0.075 Sum_probs=172.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSER--VDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 274 (565)
..++..+...+.+..|+++-..+...-.. ....|.....-+.+..+ -+++++..++=..... -....|..+.+-..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 45677777888888888887777552222 14455555555655532 2233333333222212 23445666666667
Q ss_pred HcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----------CCCCHHHHHHH
Q 008454 275 KLGIIERAVEVFKNMESMGFI----PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNG-----------IQPNVITFNTL 339 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----------~~~~~~~~~~l 339 (565)
..|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+.+.- .+.....|..+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 788888887776543222111 122233445556666777777776666554421 01111112111
Q ss_pred HH--------HHHHcCCHHHHHHHHH--HHHh----CCCCCCHHHHHHHHHHHHhcCChHH----------HHHHHHHHH
Q 008454 340 IF--------GFCKKGKLHEANRIFS--EMKA----TNVSPNVVTYNTLINGYGQVGNSEM----------GASLYEEML 395 (565)
Q Consensus 340 i~--------~~~~~g~~~~A~~~~~--~m~~----~~~~~~~~~~~~li~~~~~~g~~~~----------A~~~~~~m~ 395 (565)
+. .+.+.++-.++...|. ...+ .+..|+ .......+.+.....- -..+.+.+.
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le 675 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLE 675 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11 1111222222222211 1000 111222 2233344444433211 112222222
Q ss_pred HC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 008454 396 RN-GIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKH 474 (565)
Q Consensus 396 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 474 (565)
.. |.....-+.+.-+.-+...|+..+|.++-.+.. .||-..|-.=+.+++..+++++-+++-+.+. .+.
T Consensus 676 ~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPI 745 (829)
T KOG2280|consen 676 DQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPI 745 (829)
T ss_pred HHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCC
Confidence 11 323334455666677778899999988877665 4788889999999999999988777766543 145
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 475 IFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRK 533 (565)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 533 (565)
-|.-++.+|.+.|+.++|.+++-+.-.. .....+|.+.|++.+|.++--+
T Consensus 746 Gy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 746 GYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred CchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 5777889999999999999988654321 1567788888888888776443
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.39 E-value=1.1 Score=45.81 Aligned_cols=151 Identities=11% Similarity=0.001 Sum_probs=80.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHH
Q 008454 123 SLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKT 202 (565)
Q Consensus 123 al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 202 (565)
....|+-+..-- +..+..++.+++-.|+-+.+..++....+.+.+..+...+ .-..|..++..
T Consensus 176 G~G~f~L~lSlL-----Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L------------~LL~y~~~~~~ 238 (468)
T PF10300_consen 176 GFGLFNLVLSLL-----PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAAL------------VLLWYHLVVPS 238 (468)
T ss_pred HHHHHHHHHHhC-----CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHH------------HHHHHHHHHHH
Confidence 344555555432 2345677788888888888888888887765544332111 11234444444
Q ss_pred HHh----cCChHHHHHHHHHHHHCCCCcCHHHHHH-HHHHHHcCCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHH
Q 008454 203 YAH----RKKFRNATDTFCQMRDYGFLPIIESCNK-FLSSLLDSERVDIALGFYKEMRRNRI---SPNVYTLNMVMHAFC 274 (565)
Q Consensus 203 ~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~ 274 (565)
++. ..+.+.|.++++.+.++- |+...|.. -.+.+...|++++|++.|+....... +.....+--+.-.+.
T Consensus 239 ~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 239 FLGIDGEDVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred HcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 433 345666777777776644 44433333 23455556777777777765442110 011122233333444
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 008454 275 KLGIIERAVEVFKNMESM 292 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~ 292 (565)
-.+++++|.+.|..+.+.
T Consensus 317 ~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 317 FQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHchHHHHHHHHHHHHhc
Confidence 555666666666555543
No 237
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.38 E-value=3 Score=40.81 Aligned_cols=146 Identities=17% Similarity=0.255 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATN-VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILT-YNALI 410 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li 410 (565)
..+|...++.-.+..-.+.|..+|-++.+.+ +.+++..++++|..++ .|+..-|..+|+--... .||... -+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567788888888888999999999999888 6678888888888776 58888999999876654 234333 35677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVPN--ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
..+...++-+.|..+|+...++ +..+ ...|..+|..-..-|+...+..+=++|.+. .|...+.......|.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 7788899999999999965442 1112 457888888888889998888888888764 566555555555444
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.38 E-value=0.15 Score=46.27 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008454 349 LHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNS 384 (565)
Q Consensus 349 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 384 (565)
-+-+++++++|...|+.||..+-..++.++++.+-.
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 356889999999999999999999999999887754
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.37 E-value=0.46 Score=47.78 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=74.6
Q ss_pred HHHHHhcCChHHHHHHHH--HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 200 FKTYAHRKKFRNATDTFC--QMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~--~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
.+...-.|+++++.++.+ ++.. . -.....+.++..+-+.|..+.|+++..+-. + -.....+.|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-~--i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~---------~---rFeLAl~lg 332 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-N--IPKDQGQSIARFLEKKGYPELALQFVTDPD---------H---RFELALQLG 332 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------H---HHHHHHHCT
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-c--CChhHHHHHHHHHHHCCCHHHHHhhcCChH---------H---HhHHHHhcC
Confidence 344455566666655553 1111 1 123445666666666676666666543321 1 122334556
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 278 IIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFS 357 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 357 (565)
+++.|.++.++.. +...|..|.....+.|+++-|.+.+.+..+ +..|+-.|.-.|+.+...++.+
T Consensus 333 ~L~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 333 NLDIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp -HHHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred CHHHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 6666665544332 555666666666666666666666655332 3344555555666666555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 358 EMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYE 392 (565)
Q Consensus 358 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 392 (565)
.....| -++....++.-.|+.++..+++.
T Consensus 398 ~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 398 IAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 555544 13333344444555555554443
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.33 E-value=1.5 Score=44.69 Aligned_cols=162 Identities=21% Similarity=0.245 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 008454 371 YNTLINGYGQVGNSEMGASLYEEMLRNGIKVDI------LTYNALILGLCK----EGKTKKAAYLVKDLDKNSLVPNAST 440 (565)
Q Consensus 371 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~ 440 (565)
+..++...+-.||-+.+++.+.+..+.+-.-.+ -.|..++..++. ....+.|.++++.+.+. .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555556667777777777665553211111 123333333332 34677788888888775 466555
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008454 441 YSAL-ITGQCVRKNSERAFQLYKSMIRSG--C-RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYS 516 (565)
Q Consensus 441 ~~~l-i~~~~~~~~~~~A~~~~~~m~~~~--~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 516 (565)
|... .+.+...|++++|++.|++..... . +.....+--+...+.-.+++++|...|..+.+.. .....+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 5433 345566788888888888766421 0 1223445556667777888888888888887752 223344443332
Q ss_pred -HHHhcCCH-------HHHHHHHHHHH
Q 008454 517 -GLHHCGKD-------ELAMKLFRKME 535 (565)
Q Consensus 517 -~~~~~g~~-------~~A~~~~~~m~ 535 (565)
++...|+. ++|.++|++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 34456777 78888887764
No 241
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.29 E-value=1.2 Score=35.67 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL 434 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (565)
...+..+...|+-++..+++.++.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555555555555555555432 234455555555555555555555555555555443
No 242
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=4.6 Score=42.23 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSAL 444 (565)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 444 (565)
....-+.+--+.-+...|+..+|.++-.+.. .||...|-.=+.++...+++++-+++-+... .+.-|.-.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 3344455556666778899999988877765 4788999999999999999988777665443 24568888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 445 ITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVL 496 (565)
Q Consensus 445 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (565)
+.+|.+.|+.++|.+++.+.- +.. -.+.+|.+.|++.+|.++-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 999999999999999987642 211 5678899999999987764
No 243
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.21 E-value=0.41 Score=47.10 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 402 DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNA----STYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
+...++.+..+|.+.|++++|+..|++..+.+ |+. ..|..+..+|...|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666777777777777777777777766653 332 24666777777777777777777777664
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.16 E-value=4.5 Score=44.63 Aligned_cols=28 Identities=7% Similarity=0.171 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 008454 194 LVFDLLFKTYAHRK--KFRNATDTFCQMRD 221 (565)
Q Consensus 194 ~~~~~li~~~~~~g--~~~~A~~~~~~~~~ 221 (565)
.-.-.+|.+|++.+ ..+.|++.......
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34456778888877 67777777766664
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.13 E-value=1.6 Score=36.16 Aligned_cols=125 Identities=12% Similarity=0.108 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL 276 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 276 (565)
..++..+...+........++.+...+. .+....+.++..|++.+ ..+.++.++. ..+.+....+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3566666666777777777777776663 46667777777777653 2333344332 12333344466666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 277 GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNK-GLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFC 344 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 344 (565)
+-++++.-++.++.. |...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666655532 11122222322 5566666555531 14445555555443
No 246
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.85 Score=43.95 Aligned_cols=140 Identities=12% Similarity=0.054 Sum_probs=89.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008454 374 LINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKN 453 (565)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 453 (565)
-...|.+.|++..|...|++.+.. +. |...-+.++...... .-..++..+.-++.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhh
Confidence 366788888888888888887653 00 001111111111111 122356677777888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH-HHHHHH
Q 008454 454 SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPD-SIILSELYSGLHHCGKDE-LAMKLF 531 (565)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~-~A~~~~ 531 (565)
+..|++.-...++.+ ++|....-.-..++...|+++.|+..|+++++. .|+ ..+-+.|+.+-.+..+.. ...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888876 667777777778888889999999999888885 343 344455555544444433 346778
Q ss_pred HHHHHC
Q 008454 532 RKMEIR 537 (565)
Q Consensus 532 ~~m~~~ 537 (565)
..|...
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 877644
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.55 Score=45.18 Aligned_cols=95 Identities=14% Similarity=0.034 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008454 370 TYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQC 449 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 449 (565)
++..+..++.+.+++..|+...++.+..+. .|......=..+|...|+++.|+..|+.+.+.... |...-+-|+..--
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 455666677777777777777777777643 36666666677777777777777777777765322 3333334443333
Q ss_pred hcCCHH-HHHHHHHHHHH
Q 008454 450 VRKNSE-RAFQLYKSMIR 466 (565)
Q Consensus 450 ~~~~~~-~A~~~~~~m~~ 466 (565)
+..+.. ...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333332 33566666664
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.73 E-value=3.8 Score=38.61 Aligned_cols=162 Identities=11% Similarity=0.044 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 370 TYNTLINGYGQVGNSE---MGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALIT 446 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 446 (565)
++..++.+|...+..+ +|..+++.+...... ...++..-+..+.+.++.+++.+.+..|...-.. ....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 3455666666655443 455566666544222 2344444555555677778888888877765221 2234444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHHcCCCCCHH-HHHH-HHHH---HHhcCC------HHHHHHHHHHHHHc-CCCCCHHHH
Q 008454 447 GQ---CVRKNSERAFQLYKSMIRSGCRPNKH-IFEM-LMST---FCQNED------FDRAAEVLLEMLEK-CMAPDSIIL 511 (565)
Q Consensus 447 ~~---~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~-li~~---~~~~g~------~~~A~~~~~~~~~~-~~~p~~~~~ 511 (565)
.+ .. .....|...+..++...+.|... .... ++.. ....++ .+...+++..+.+. +.+.+..+-
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 43 22 23345666666666554555543 1111 1111 111111 44444445433221 222333322
Q ss_pred H---HH----HHHHHhcCCHHHHHHHHHHH
Q 008454 512 S---EL----YSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 512 ~---~l----i~~~~~~g~~~~A~~~~~~m 534 (565)
. +| ...+.+.+++++|.++|+-.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2 22 33456789999999999854
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.70 E-value=0.12 Score=32.80 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKF 234 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 234 (565)
.++..+...|...|++++|+++|+++.+.... |...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 45666777888888888888888888776543 55555544
No 250
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.62 E-value=1.4 Score=35.21 Aligned_cols=93 Identities=14% Similarity=-0.021 Sum_probs=66.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHc
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVY---TLNMVMHAFCKL 276 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~ 276 (565)
.-+++..|+.+.|++.|.+....-.. ...+||.-..++.-.|+.++|++-+++..+..-..... .|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34567789999999999998875433 77889999999999999999998888877642121222 233333456667
Q ss_pred CCHHHHHHHHHHHHhCC
Q 008454 277 GIIERAVEVFKNMESMG 293 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g 293 (565)
|+-+.|..-|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888887777665
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.49 E-value=2.4 Score=35.12 Aligned_cols=8 Identities=25% Similarity=0.700 Sum_probs=3.0
Q ss_pred CHHHHHHH
Q 008454 488 DFDRAAEV 495 (565)
Q Consensus 488 ~~~~A~~~ 495 (565)
+.+.|.++
T Consensus 111 d~~~a~~~ 118 (140)
T smart00299 111 NYEKAIEY 118 (140)
T ss_pred CHHHHHHH
Confidence 33333333
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=94.38 E-value=5.2 Score=39.78 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008454 384 SEMGASLYEEMLRN-GIKVD-ILTYNALILGLCK---------EGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRK 452 (565)
Q Consensus 384 ~~~A~~~~~~m~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 452 (565)
.+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++-+...+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 34566666666622 22332 3344433333322 22345666777777776654 7777777777667777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHH
Q 008454 453 NSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDS---IILSELYSGLHHCGKDELAMK 529 (565)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~ 529 (565)
+++.|..+|++....+ +....+|......+.-.|+.++|.+.+++..+. .|.. .+....++.|+.. ..++|.+
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 7888888888888763 333455555555666778888888888887664 3332 2334444566654 4566666
Q ss_pred HHHH
Q 008454 530 LFRK 533 (565)
Q Consensus 530 ~~~~ 533 (565)
+|-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 6654
No 253
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.27 E-value=6.5 Score=39.30 Aligned_cols=180 Identities=11% Similarity=0.065 Sum_probs=128.0
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (565)
.+....-.++.+++.+.+++-...+..+++..|. +...|-.++++|..+ ..++-..+++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--------------------~kmal~el~q~y~en-~n~~l~~lWe 122 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--------------------SKMALLELLQCYKEN-GNEQLYSLWE 122 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--------------------hHHHHHHHHHHHHhc-CchhhHHHHH
Confidence 4555667788888888888888888888888753 667788899999988 6788889999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS-----PNVYTLNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
++.+..+. |++.-..|...|-+ ++-+.+..+|......-++ .-...|.-+... -..+.+..+.+..++...
T Consensus 123 r~ve~dfn-Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~ 198 (711)
T COG1747 123 RLVEYDFN-DVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTK 198 (711)
T ss_pred HHHHhcch-hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHh
Confidence 99888765 66655666666655 7888888888887654222 112345555442 235677778887777654
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 293 -GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGF 343 (565)
Q Consensus 293 -g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 343 (565)
|...-.+.+.-+-.-|....++++|++++..+.+..- .|..+-..++..+
T Consensus 199 lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~l 249 (711)
T COG1747 199 LGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDE-KDVWARKEIIENL 249 (711)
T ss_pred hccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHH
Confidence 5555677777787888899999999999997776643 2555555554433
No 254
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.23 E-value=0.29 Score=45.27 Aligned_cols=78 Identities=9% Similarity=0.099 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR-----NRISPNVYTLNM 268 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 268 (565)
.++..++..+...|+++.+...++++...... +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35666777777778888888888887777654 777788888888888888888877777654 577777777766
Q ss_pred HHHH
Q 008454 269 VMHA 272 (565)
Q Consensus 269 li~~ 272 (565)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6665
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.22 E-value=3.9 Score=36.56 Aligned_cols=222 Identities=18% Similarity=0.084 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 277 GIIERAVEVFKNMESMGFI-PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN-GIQPNVITFNTLIFGFCKKGKLHEANR 354 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (565)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555555443221 12445555556666666666666666655542 122344445555555556666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 355 IFSEMKATNVSPNVVTYNTLIN-GYGQVGNSEMGASLYEEMLRNGI--KVDILTYNALILGLCKEGKTKKAAYLVKDLDK 431 (565)
Q Consensus 355 ~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 431 (565)
.+.......... ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666665542222 111222222 45556666666666666544211 01222333333334445555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 432 NSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 432 ~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
.........+..+...+...++++.|...+...... .|+ ...+..+...+...+..+.+...+.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 321112344444555555555555555555555543 222 22233333333344445555555555444
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.13 E-value=2.4 Score=40.26 Aligned_cols=229 Identities=10% Similarity=0.091 Sum_probs=126.0
Q ss_pred HHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC---CCHHHHHHHHHHHHH
Q 008454 273 FCKLGIIERAVEVFKNMESM--GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN--GIQ---PNVITFNTLIFGFCK 345 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~---~~~~~~~~li~~~~~ 345 (565)
+....+.++|+..+.+...+ ...---.+|..+..+.++.|.+++++..--.-++. ... --...|..+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888877776543 11112456667778888888888776532211110 001 112344445555555
Q ss_pred cCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHc
Q 008454 346 KGKLHEANRIFSEMKAT-NVSP---NVVTYNTLINGYGQVGNSEMGASLYEEMLRN-----GIKVDILTYNALILGLCKE 416 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~ 416 (565)
.-++.+++.+-..-... |..+ ......++..++...+.++++++.|+...+. +......+|-.|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554443331 2222 1122334556666677888888888876643 1223456677888888888
Q ss_pred CCHHHHHHHHHHHHh----CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHH----HHHHHHH
Q 008454 417 GKTKKAAYLVKDLDK----NSLVPNASTYS-----ALITGQCVRKNSERAFQLYKSMIRSGC-RPNKHI----FEMLMST 482 (565)
Q Consensus 417 g~~~~A~~~~~~~~~----~~~~p~~~~~~-----~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~----~~~li~~ 482 (565)
.++++|.....+..+ .++.--..-|. .|..++...|+.-.|.+.-++..+..+ .-|..+ .-.+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888888776665432 22221111222 233456666777777766666544211 113333 3455566
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 008454 483 FCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~ 501 (565)
|...|+.+.|..-++++..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 7777888887777766654
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.09 E-value=2.8 Score=41.72 Aligned_cols=64 Identities=8% Similarity=0.156 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 228 IESCNKFLSSLLDSERVDIALGFYKEMRRNRIS-PNVYTLNMVMHAFCKLGIIERAVEVFKNMES 291 (565)
Q Consensus 228 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (565)
..+-..+...+.+.|+.++|.++|++|.+.... .+......|+.++...+.+.++..++.+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 333344555566667777777777776543211 1234556667777777777777777666543
No 258
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.92 E-value=3.5 Score=35.02 Aligned_cols=136 Identities=17% Similarity=0.216 Sum_probs=78.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 389 SLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSG 468 (565)
Q Consensus 389 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 468 (565)
+++..+.+.++.++...+..+++.+.+.|++.... .+...++.+|.......+-.+.. ....+.++=-+|...=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 44455556677777778888888888877765443 33344455555544444433222 2233333333333320
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008454 469 CRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 469 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 538 (565)
...+..+++.+...|++-+|.++.+..... +......++.+..+.+|...-..+|+-+.+.+
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 023566777777888888888887665322 12223456667777777777777777666554
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.91 E-value=2.7 Score=33.62 Aligned_cols=94 Identities=6% Similarity=-0.102 Sum_probs=74.6
Q ss_pred HHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 008454 146 VLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL 225 (565)
Q Consensus 146 l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 225 (565)
-.-+++..|+.+.|++.|.+.+.. +|..+.+||.-..++.-.|+.++|++-+++..+..-.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l-------------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCL-------------------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHh-------------------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 345677899999999999998887 7778899999999999999999999999998775322
Q ss_pred cCHHH---HHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 008454 226 PIIES---CNKFLSSLLDSERVDIALGFYKEMRRNR 258 (565)
Q Consensus 226 p~~~~---~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 258 (565)
..-.. |..-...|...|+-+.|..-|+...+.|
T Consensus 110 ~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 110 QTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred cchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 23333 3334456777899999999998887766
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.81 E-value=1.3 Score=36.30 Aligned_cols=66 Identities=8% Similarity=0.026 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
+..-.....+.|++.+|.+.|+.+... |+..+-...+--.|+.+|.+.|++++|+..+++.++.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~r----------------yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTR----------------YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc----------------CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 333444455667777777777666655 2223334455556777777777777777777777765
Q ss_pred CC
Q 008454 223 GF 224 (565)
Q Consensus 223 ~~ 224 (565)
..
T Consensus 77 hP 78 (142)
T PF13512_consen 77 HP 78 (142)
T ss_pred CC
Confidence 54
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.81 E-value=4.7 Score=36.02 Aligned_cols=224 Identities=17% Similarity=0.046 Sum_probs=108.4
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008454 242 ERVDIALGFYKEMRRNRIS-PNVYTLNMVMHAFCKLGIIERAVEVFKNMESM-GFIPSVTTYNTLISGHCNKGLLSLAMK 319 (565)
Q Consensus 242 ~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~ 319 (565)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444444444444433211 02345555555556666666666666555431 122234444455555555566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 320 FKNLMEKNGIQPNVITFNTLIF-GFCKKGKLHEANRIFSEMKATNV--SPNVVTYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 320 ~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666655543222 111222222 55566666666666666543210 01222233333334455666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 397 NGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 397 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
.........+..+...+...++.+.|...+......... ....+..+...+...+..+.+...+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 422113455555666666666666666666665553221 1223333333333445566666666655554
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=5.7 Score=36.88 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=91.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008454 235 LSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLL 314 (565)
Q Consensus 235 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 314 (565)
.......|++.+|..+|+........ +...--.+..+|...|+++.|..++..+...--.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34556678888888888887765322 45566677888888888888888888776442111122222234445555555
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChH
Q 008454 315 SLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN-VSPNVVTYNTLINGYGQVGNSE 385 (565)
Q Consensus 315 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~ 385 (565)
.+...+-.+.-.. +-|...-..+...+...|+.++|++.+-.+.+.. -.-|...-..++..+.-.|.-+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 5555555555543 2266666677778888888888887776665542 1334455566666666665333
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.77 E-value=2.4 Score=34.77 Aligned_cols=84 Identities=6% Similarity=-0.025 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL--PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
..+-.-.....+.|++++|++.|+.+..+-.. -...+.-.++.++.+.+++++|...+++.++..+.....-|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33334455667789999999999999886422 1456677788999999999999999999988754433345555555
Q ss_pred HHHHcC
Q 008454 272 AFCKLG 277 (565)
Q Consensus 272 ~~~~~g 277 (565)
+++...
T Consensus 91 gL~~~~ 96 (142)
T PF13512_consen 91 GLSYYE 96 (142)
T ss_pred HHHHHH
Confidence 555433
No 264
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=0.94 Score=47.62 Aligned_cols=178 Identities=12% Similarity=0.127 Sum_probs=120.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008454 301 YNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN--VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGY 378 (565)
Q Consensus 301 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 378 (565)
...-+..+++...++.|..+.+. .+..++ ........+-+.+.|++++|...|-+-... +.| ..+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 44567788888888888877654 222222 223344455667899999999988776643 122 2356677
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 379 GQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 379 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
.....+.....+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7777888888899999999886 66677789999999999998877776544 2221 112455666677777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (565)
.+-..... +......+ +-..|++++|.+++..+
T Consensus 484 ~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 66655432 33444444 45678999999998765
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.73 E-value=3 Score=39.57 Aligned_cols=229 Identities=13% Similarity=0.094 Sum_probs=144.1
Q ss_pred HHHcCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-H---HhCC-CCCCHHHHHHHHHHHH
Q 008454 237 SLLDSERVDIALGFYKEMRRNR--ISPNVYTLNMVMHAFCKLGIIERAVEVFKN-M---ESMG-FIPSVTTYNTLISGHC 309 (565)
Q Consensus 237 ~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-m---~~~g-~~p~~~~~~~li~~~~ 309 (565)
-+....+.++|+..+......- ...--.+|..+..+.++.|.+++++..--. | .+.. -..--..|..+..++-
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888988888776531 112235677788888999988887654221 2 1110 0011334555556666
Q ss_pred hcCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHh
Q 008454 310 NKGLLSLAMKFKNLMEKN-GIQP---NVITFNTLIFGFCKKGKLHEANRIFSEMKATN-----VSPNVVTYNTLINGYGQ 380 (565)
Q Consensus 310 ~~g~~~~a~~~~~~m~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~ 380 (565)
+.-++.+++.+-..-... |..+ -......+..++...+.++++++.|+...+.. -......|..|...|.+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 666666666665544432 2222 12334456678888889999999999876531 12234668889999999
Q ss_pred cCChHHHHHHHHHHHH----CCCCCCHH-HH-----HHHHHHHHHcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHH
Q 008454 381 VGNSEMGASLYEEMLR----NGIKVDIL-TY-----NALILGLCKEGKTKKAAYLVKDLDK----NSLVP-NASTYSALI 445 (565)
Q Consensus 381 ~g~~~~A~~~~~~m~~----~~~~~~~~-~~-----~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~li 445 (565)
..|+++|.-+..+..+ .++. |.. -| ..+.-++...|++..|.+.-++..+ .|-.+ .......+.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 9999999887776543 2332 221 22 3345567778888888888777644 33222 223455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 008454 446 TGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~m~~ 466 (565)
..|...|+.+.|+.-|+++..
T Consensus 254 DIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHH
Confidence 778889999999988888764
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.47 E-value=4.2 Score=34.41 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
+...|..-+. ++..++.++|..-|..+.+.|.-.- .....-.........|+...|+..|++
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Y-----------------pvLA~mr~at~~a~kgdta~AV~aFde 119 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSY-----------------PVLARMRAATLLAQKGDTAAAVAAFDE 119 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcc-----------------hHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 3444544333 3556677777777777766652110 011112233455666777777777777
Q ss_pred HHHCCCCcCHH-H--HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 219 MRDYGFLPIIE-S--CNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMES 291 (565)
Q Consensus 219 ~~~~~~~p~~~-~--~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (565)
+-.....|-.. - --.-.-.+...|.+++.....+-+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 120 ia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 120 IAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 76554444322 1 1111223445566666666555554433333333344455555566666666666666554
No 267
>PRK11906 transcriptional regulator; Provisional
Probab=93.38 E-value=5.9 Score=39.37 Aligned_cols=64 Identities=8% Similarity=-0.107 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMR 255 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 255 (565)
.|+.+...+..++.-.++++.|..+|++....+.. ...+|....-.+.-.|+.++|.+.+++..
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34445445555445555555555555555544322 23333333333334455555555555533
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.05 E-value=4.9 Score=34.01 Aligned_cols=125 Identities=12% Similarity=0.121 Sum_probs=77.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHHHcCC
Q 008454 203 YAHRKKFRNATDTFCQMRDYGFLP-IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVY-TLNMV--MHAFCKLGI 278 (565)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~ 278 (565)
+++.++.++|+.-|..+.+.|..- -+-............|+...|...|+++-.....|-.. -..-| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356678888888888888766541 12223334455667788888888888876543333322 11111 122445677
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008454 279 IERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN 327 (565)
Q Consensus 279 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 327 (565)
++......+-+-..|-..-...-..|.-+..+.|++..|.+.|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 7777777766665554445555566777777777887777777777654
No 269
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.02 E-value=13 Score=38.93 Aligned_cols=187 Identities=11% Similarity=0.053 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHH--HHH---HHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChH
Q 008454 120 YVLSLEFFTWVQTHKPSSLTLETHSIV--LHI---LTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPL 194 (565)
Q Consensus 120 ~~~al~~f~~~~~~~~~~~~~~~~~~l--~~~---l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (565)
...|.++|+.+..... ......+ +.. .+..++.+.|..+++.+.+. |.... ....+.
T Consensus 228 ~~~a~~~~~~~a~~g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~---------~~~~a-----~~~~~~ 289 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAES---------FKKAA-----TKGLPP 289 (552)
T ss_pred hhHHHHHHHHHHhhcc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH---------HHHHH-----hhcCCc
Confidence 4568888887766442 2222222 222 23567899999999988772 00000 011334
Q ss_pred HHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc---CCChHHHHHHHHHHHHCCCCCCHHHH
Q 008454 195 VFDLLFKTYAHRK-----KFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD---SERVDIALGFYKEMRRNRISPNVYTL 266 (565)
Q Consensus 195 ~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~ 266 (565)
....+..+|.+.. +.+.|+.+|.+.-+.|.+ +.... +...+.. ..+...|.++|....+.|.. ....+
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHH
Confidence 5556777777643 667799999999888754 43332 3333322 24577899999998887732 22222
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 008454 267 NMVMHAFC--KLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ 330 (565)
Q Consensus 267 ~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 330 (565)
..++.... ...+.+.|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+...|..
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 22222111 2347888888998888887 3332222233334444 7777777777777766543
No 270
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.01 E-value=14 Score=38.92 Aligned_cols=274 Identities=16% Similarity=0.091 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHH----HH-HHHcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhc
Q 008454 244 VDIALGFYKEMRRNRISPNVYTLNMVM----HA-FCKLGIIERAVEVFKNMES-------MGFIPSVTTYNTLISGHCNK 311 (565)
Q Consensus 244 ~~~A~~~~~~m~~~~~~p~~~~~~~li----~~-~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 311 (565)
...|.++++...+.| +...-..+. .+ +....+.+.|+..++...+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 346777777776655 222222222 12 3345677888888877765 44 223444566666654
Q ss_pred C-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 008454 312 G-----LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK-KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYG----QV 381 (565)
Q Consensus 312 g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~ 381 (565)
. +.+.|..++....+.|. |+....-..+..... ..+...|.++|...-+.|. +. .+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~--A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-IL--AIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hH--HHHHHHHHHHhCCCcC
Confidence 3 56678888888887764 344433333222222 2467788888888888773 22 2222222221 22
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hh----cCC
Q 008454 382 GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQ----CV----RKN 453 (565)
Q Consensus 382 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~----~~~ 453 (565)
.+...|..++++..+.|. |...--...+..+.. ++.+.+...+..+.+.+.. ...+-...+..- .. ..+
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccc
Confidence 367788888888888773 222222222233333 6667666666666655543 222222211110 01 124
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCCHH
Q 008454 454 SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN----EDFDRAAEVLLEMLEKCMAPDSIILSELYSGL----HHCGKDE 525 (565)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~ 525 (565)
.+.+..++......| +......+...|... .+++.|...+......+ ....|+ +...+ .-.. +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-hH
Confidence 556666666666544 334444444444332 34666777776666654 222222 21111 1123 56
Q ss_pred HHHHHHHHHHHCC
Q 008454 526 LAMKLFRKMEIRG 538 (565)
Q Consensus 526 ~A~~~~~~m~~~g 538 (565)
.|.+++.+..+.+
T Consensus 527 ~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 527 LAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHhcC
Confidence 7777777665543
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.93 E-value=11 Score=37.74 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIK-VDILTYNALILGLCKEGKTKKAAYLVKDLDK 431 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 431 (565)
..+..++.+.|+.++|.+.+.+|.+.... -.......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34566666778888888888888764322 2344666788888888888888888777644
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=3.3 Score=38.93 Aligned_cols=154 Identities=10% Similarity=-0.054 Sum_probs=105.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHH
Q 008454 204 AHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN---RISPNVYTLNMVMHAFCKLGIIE 280 (565)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~ 280 (565)
-..|+..+|-..++++.+.-+ .|.-+++..=.++.-.|+.+.-...++++... +++--.+...++.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456888888888999887543 38888888888898899988888888887643 22222333344555666889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 281 RAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN---VITFNTLIFGFCKKGKLHEANRIFS 357 (565)
Q Consensus 281 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~ 357 (565)
+|++.-++..+.+. -|...-.++...+-..|++.++.++..+-...--... ..-|=-..-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99998888877643 3677777888888889999999887765433210000 1111122234455689999999997
Q ss_pred HH
Q 008454 358 EM 359 (565)
Q Consensus 358 ~m 359 (565)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 53
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.86 E-value=6.6 Score=37.02 Aligned_cols=162 Identities=10% Similarity=-0.016 Sum_probs=109.0
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
...-+.++-..|++.+|....+++++. .|.+-.++.-.=.+|..+|+...-...++++...
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d-------------------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~ 166 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDD-------------------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK 166 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHh-------------------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc
Confidence 333444555677777777777777776 4556666776777888899999999999998765
Q ss_pred CCCcCHHH--H--HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCC
Q 008454 223 GFLPIIES--C--NKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM---GFI 295 (565)
Q Consensus 223 ~~~p~~~~--~--~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~ 295 (565)
.- +|... | ..+.-++...|-+++|.+.-++..+.+ +-|......+.+.+--.|++.++.+.+.+-... +.-
T Consensus 167 wn-~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~m 244 (491)
T KOG2610|consen 167 WN-ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWM 244 (491)
T ss_pred cC-CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhH
Confidence 21 23322 2 223344567899999999988877654 346777788888888899999999888765432 111
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008454 296 PSVTTYNTLISGHCNKGLLSLAMKFKNLME 325 (565)
Q Consensus 296 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 325 (565)
.-...|-...-.+...+.++.|+++|+.-.
T Consensus 245 lasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 245 LASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 111222233344566799999999998543
No 274
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.85 E-value=5.4 Score=33.93 Aligned_cols=134 Identities=10% Similarity=0.148 Sum_probs=61.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 008454 249 GFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNG 328 (565)
Q Consensus 249 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 328 (565)
+.++.+.+.+++|+...+..++..+.+.|++... ..+...++-+|.......+-.+ .+.+..+.++--.|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-
Confidence 3344444555666666666666666666654333 2333334444443333222111 12233334433333332
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 329 IQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 329 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
=...+..+++.+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0012344555666666666666666554222 111223445555555555555555544443
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.60 E-value=1.6 Score=40.60 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR-----SGCRPNKHIFEM 478 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 478 (565)
.++..++..+...|+.+.+...++++...... +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35556666667777777777777777666544 666777777777777777777777766654 366666665555
Q ss_pred HHHH
Q 008454 479 LMST 482 (565)
Q Consensus 479 li~~ 482 (565)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.57 E-value=7.6 Score=34.95 Aligned_cols=16 Identities=13% Similarity=0.303 Sum_probs=7.2
Q ss_pred HHhcCCHHHHHHHHHH
Q 008454 483 FCQNEDFDRAAEVLLE 498 (565)
Q Consensus 483 ~~~~g~~~~A~~~~~~ 498 (565)
+.-..++..|...++.
T Consensus 200 ~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 200 YLYAHDYVQAEKCYRD 215 (308)
T ss_pred HhhHHHHHHHHHHhcc
Confidence 3334444444444444
No 277
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.09 E-value=0.44 Score=30.15 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 008454 141 ETHSIVLHILTKNRKFKSSESILRGILDS 169 (565)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~a~~ll~~~~~~ 169 (565)
+++..+...+...|++++|..+++++++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999998
No 278
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.95 E-value=16 Score=37.38 Aligned_cols=183 Identities=16% Similarity=0.119 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 008454 332 NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIK--VDILTYNAL 409 (565)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~l 409 (565)
+..+|...+..-.+.|+++.+.-+|+...-. +..=...|-..+.-....|+.+-|..++....+-..+ |....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567777777778888888888888776532 0111223333333334447777777777666554333 223333322
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHcCCCCCHHHHHHHHHH---
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPNAS-TYSALITGQCVRKNSERAF---QLYKSMIRSGCRPNKHIFEMLMST--- 482 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~---~~~~~m~~~~~~p~~~~~~~li~~--- 482 (565)
+ .-..|++..|..+++.+...- |+.. .-..-+....+.|+.+.+. +++...... .-+......+.--
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFAR 448 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHH
Confidence 2 234578888888888887653 4433 1222233445666666666 333333322 1222222222221
Q ss_pred --HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 483 --FCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCG 522 (565)
Q Consensus 483 --~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 522 (565)
+.-.++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23357788888888888775 5556667777776665544
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.92 E-value=2.3 Score=36.84 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLP--IIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
..+..+...|++.|+.+.|++.|.++.+....+ -...+-.+++...-.+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457788899999999999999999998875544 356677888888888888888887777654
No 280
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.91 E-value=12 Score=35.61 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Q 008454 281 RAVEVFKNMESMGFIPSVTTYNT 303 (565)
Q Consensus 281 ~a~~~~~~m~~~g~~p~~~~~~~ 303 (565)
+.+.+++.|.+.|+.-+..+|-+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHH
Confidence 34455555555555555544444
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.89 E-value=2.2 Score=36.96 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008454 264 YTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS--VTTYNTLISGHCNKGLLSLAMKFKNLMEK 326 (565)
Q Consensus 264 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 326 (565)
..+..+...|++.|+.++|++.|.++.+....+. ...+..+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455666667777777777777777666533322 34455566666667777777666665543
No 282
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=91.85 E-value=14 Score=36.36 Aligned_cols=62 Identities=16% Similarity=0.286 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008454 477 EMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGL 539 (565)
Q Consensus 477 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 539 (565)
..|+.-|...|+..+|...++++--- +-....++.+++.+..+.|+-...+.+++.+.+.|+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 45666666667777776666554221 122345566666666666666666666666655543
No 283
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.83 E-value=14 Score=36.46 Aligned_cols=381 Identities=15% Similarity=0.198 Sum_probs=208.8
Q ss_pred ChHHHHHHHHhhcCChHHHHHHHH-HHhhcCCCCC-----------CHHHH-HHHHHHHHhCCCchhHHHHHHHHhhcCC
Q 008454 105 TPFRVKHVLLKVQKDYVLSLEFFT-WVQTHKPSSL-----------TLETH-SIVLHILTKNRKFKSSESILRGILDSDS 171 (565)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~al~~f~-~~~~~~~~~~-----------~~~~~-~~l~~~l~~~~~~~~a~~ll~~~~~~~~ 171 (565)
--..+..+....++.+..|++.+. |-....+..+ +...+ +..++++...|.+.+++.+++++...-.
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 345567777778889999998876 4433222211 11111 3457888999999999999998876511
Q ss_pred CCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhc--------CChHHHHHHH-------HHHHHC------CCCcCHHH
Q 008454 172 FDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHR--------KKFRNATDTF-------CQMRDY------GFLPIIES 230 (565)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~-------~~~~~~------~~~p~~~~ 230 (565)
+ +.+.-+..+|+.++-.+.+. ...+-+.+.| .+|... .+.|....
T Consensus 160 -k-------------rE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL 225 (549)
T PF07079_consen 160 -K-------------RECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEEL 225 (549)
T ss_pred -h-------------hhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHH
Confidence 0 12334555555533333221 1111111111 222111 22334444
Q ss_pred HHHHHHHHHcC--CChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHHHH
Q 008454 231 CNKFLSSLLDS--ERVDIALGFYKEMRRNRISPNVYT-LNMVMHAFCKLGIIERAVEVFKNMESMGFI----PSVTTYNT 303 (565)
Q Consensus 231 ~~~ll~~~~~~--~~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~ 303 (565)
...++..+.-. .+..--.++++...+.-+.|+-.. ...++..+.. +.+++..+-+.+....+. -=+.++..
T Consensus 226 ~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~ 303 (549)
T PF07079_consen 226 FSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGN 303 (549)
T ss_pred HHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44444444322 222333444444444434555332 2333333333 555555555544433211 13567888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHH-HH
Q 008454 304 LISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFN-------TLIFGFCK----KGKLHEANRIFSEMKATNVSPNVV-TY 371 (565)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-------~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~-~~ 371 (565)
++....+.++...|.+.+..+.-. .|+...-. .+-+..|. .-+..+-+.++++....++ |.. ..
T Consensus 304 ~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLv 379 (549)
T PF07079_consen 304 LLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLV 379 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHH
Confidence 888899999999999988887764 33333221 12222221 1123344555555554432 221 11
Q ss_pred HHHH---HHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHH---cCCHHHHHHHHHHHHhCCCCCC---
Q 008454 372 NTLI---NGYGQVGN-SEMGASLYEEMLRNGIKVDILTYNALI----LGLCK---EGKTKKAAYLVKDLDKNSLVPN--- 437 (565)
Q Consensus 372 ~~li---~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~~~~~~~~p~--- 437 (565)
..|+ .-+-+.|. -++|.++++.+.+-.. -|..+-|.+. .+|.+ ...+.+-.++-+-+.+.|+.|-
T Consensus 380 h~L~~~Ak~lW~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 380 HYLVFGAKHLWEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 1122 22334454 8899999998887421 2333333222 22322 3345566666666777787763
Q ss_pred -HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008454 438 -ASTYSALITG--QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSE 513 (565)
Q Consensus 438 -~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 513 (565)
...-|.|..+ +...|++.++.-.-..+.+ +.|+..+|..+.-++....++++|..++.. ++|+..+++.
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 3344555443 4568999988766666554 589999999999999999999999999865 4667776664
No 284
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.78 E-value=20 Score=38.13 Aligned_cols=28 Identities=0% Similarity=-0.043 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 008454 142 THSIVLHILTKNRKFKSSESILRGILDS 169 (565)
Q Consensus 142 ~~~~l~~~l~~~~~~~~a~~ll~~~~~~ 169 (565)
....+|-.|.|.|..++|.++..+..+.
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~ 140 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ 140 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh
Confidence 3456788889999999999999555444
No 285
>PRK09687 putative lyase; Provisional
Probab=91.04 E-value=14 Score=34.84 Aligned_cols=234 Identities=12% Similarity=0.054 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHhCCCCCCHHHHH
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL----HEANRIFSEMKATNVSPNVVTYN 372 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~~~~ 372 (565)
|.......+.++...|. +++...+..+.+. +|...-...+.++...|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44444444444444443 2233333333322 2444444445555555542 3455555554322 34444444
Q ss_pred HHHHHHHhcCCh-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 373 TLINGYGQVGNS-----EMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITG 447 (565)
Q Consensus 373 ~li~~~~~~g~~-----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 447 (565)
..+.+++..+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+.+. ++...-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 445554444321 122233322222 2355555566666666665 3455555555442 344444444444
Q ss_pred HHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008454 448 QCVRK-NSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDEL 526 (565)
Q Consensus 448 ~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 526 (565)
+.+.+ +...+...+..++. .++..+-...+.++.+.|+. .+...+-+..+.+ + .....+.++...|.. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 44432 13345555555553 34556666666677776663 4544444444432 2 233566677777774 5
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHhhccc
Q 008454 527 AMKLFRKMEIRGLLPKGFDKLRTINCAPE 555 (565)
Q Consensus 527 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 555 (565)
|...+.++.+. .||.......+.+|.+
T Consensus 253 a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 253 LLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 77777776653 2466666666666543
No 286
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.60 E-value=15 Score=34.57 Aligned_cols=130 Identities=13% Similarity=0.117 Sum_probs=67.5
Q ss_pred HhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHC-------
Q 008454 151 TKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRK-KFRNATDTFCQMRDY------- 222 (565)
Q Consensus 151 ~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~------- 222 (565)
.+.|+++.|..++.++........| .....+ ....|+ +.......+ +++.|..++++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~-~~~~~L---------a~~~yn-~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDP-DMAEEL---------ARVCYN-IGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCc-HHHHHH---------HHHHHH-HHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence 4678888888888877665311111 111111 112343 334444455 888887777765442
Q ss_pred -CCCcC-----HHHHHHHHHHHHcCCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 223 -GFLPI-----IESCNKFLSSLLDSERVD---IALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 223 -~~~p~-----~~~~~~ll~~~~~~~~~~---~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
...++ ..++..++.+|...+..+ +|..+++.+.... +-....+..-+..+.+.++.+++.+++..|...
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 11122 234555666666655543 3445555553322 112344444455555566777777777777654
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.50 E-value=0.61 Score=27.95 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMR 220 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~ 220 (565)
|..|...|.+.|++++|+++|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566677777777777777777643
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.31 E-value=10 Score=31.95 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=10.5
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 008454 202 TYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~ 222 (565)
.+.+.|+|.+|+.+|+.+.+.
T Consensus 53 l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHhCCHHHHHHHHHHHhcc
Confidence 334445555555555555443
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.87 E-value=0.82 Score=27.39 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 510 ILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 510 ~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
+|..|...|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677778888888888888887743
No 290
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.66 E-value=14 Score=32.69 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=46.1
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
.|.-+.+||.|.-.+...|+++.|.+.|+...+.+..-+-...|.-|..| --|++..|.+-+...-+.
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhc
Confidence 44567888888888888899999999988888866443333334333333 357788877766665544
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.10 E-value=21 Score=33.93 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Q 008454 351 EANRIFSEMKATNVSPNVVTYNT 373 (565)
Q Consensus 351 ~A~~~~~~m~~~~~~~~~~~~~~ 373 (565)
+.+.+++.|.+.|..-+..+|-+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHH
Confidence 34455555555555555544433
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.04 E-value=0.49 Score=27.98 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATD 214 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~ 214 (565)
.|.++.+|+.+...|...|++++|++
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 67788999999999999999998863
No 293
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.02 E-value=37 Score=36.67 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=66.4
Q ss_pred HhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHH---------------hcCCHHHHHHHHHHHHHcCCCCC
Q 008454 449 CVRKNSERAFQLYKSMIRS------GCRPNKHIFEMLMSTFC---------------QNEDFDRAAEVLLEMLEKCMAPD 507 (565)
Q Consensus 449 ~~~~~~~~A~~~~~~m~~~------~~~p~~~~~~~li~~~~---------------~~g~~~~A~~~~~~~~~~~~~p~ 507 (565)
...|.+.+|++.|+..+-. .-.-+..-...++..++ ..+..+.+.++-.-.....++|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 4578999999999988753 11122333334444332 12334444333333333445555
Q ss_pred HH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH-Hhhccc
Q 008454 508 SI--ILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRT-INCAPE 555 (565)
Q Consensus 508 ~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~ 555 (565)
.. +....+..+.+.+++..|..+-.++.+.+-.|+...-..- +.++.+
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~ek 1132 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEK 1132 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhc
Confidence 44 4667788999999999999999999999888776654444 444443
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.60 E-value=14 Score=31.16 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=28.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLV-PNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
.+.++.+++..++..+.-.... |...++... .+...|++.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 3556677777777766553221 122233322 345667777777777776554
No 295
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.16 E-value=22 Score=33.10 Aligned_cols=133 Identities=9% Similarity=0.169 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008454 419 TKKAAYLVKDLDK-NSLVPNASTYSALITGQCV-RK-NSERAFQLYKSMIRS-GCRPNKHIFEMLMSTFCQNEDFDRAAE 494 (565)
Q Consensus 419 ~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~-~~-~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 494 (565)
+.+|+++|+.... ..+.-|..+...+++.... .+ ....-.++.+-+... |-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552211 1233355556666655544 11 222233333333332 235667777777788888888888888
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCHhhHHHHHh
Q 008454 495 VLLEMLEK-CMAPDSIILSELYSGLHHCGKDELAMKLFRK-----MEIRGLLPKGFDKLRTIN 551 (565)
Q Consensus 495 ~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~~~~~ll~ 551 (565)
+|+..... +..-|...|..+|+.....|+..-..++..+ +...|+..+...-..+-+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 88776554 5556777788888888888887666555553 233455555444444333
No 296
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.96 E-value=23 Score=32.95 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHH
Q 008454 120 YVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGI 166 (565)
Q Consensus 120 ~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~ 166 (565)
...|+++|-.+..+.+-+.+ -..++..+....+...|...|...
T Consensus 149 s~KA~ELFayLv~hkgk~v~---~~~~ie~lwpe~D~kka~s~lhTt 192 (361)
T COG3947 149 SRKALELFAYLVEHKGKEVT---SWEAIEALWPEKDEKKASSLLHTT 192 (361)
T ss_pred hhHHHHHHHHHHHhcCCccc---HhHHHHHHccccchhhHHHHHHHH
Confidence 36799999999998875444 355677788888888887776544
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.19 E-value=11 Score=28.70 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 421 KAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
+..+-+..+...++.|++....+.+++|.+.+++..|+++++-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555555666666666666666666666666666655543
No 298
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.01 E-value=5.4 Score=30.04 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 422 AAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMI 465 (565)
Q Consensus 422 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 465 (565)
+.+-++.+...++.|++....+.+++|.+.+++..|.++++-..
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555555444
No 299
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.86 E-value=40 Score=34.68 Aligned_cols=385 Identities=12% Similarity=0.019 Sum_probs=203.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHH
Q 008454 123 SLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKT 202 (565)
Q Consensus 123 al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 202 (565)
+...+..++...| ---.-|...+..=.+.|..+.+..+|++.+.. .+.+...|......
T Consensus 64 ~r~~y~~fL~kyP--l~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-------------------ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 64 LREVYDIFLSKYP--LCYGYWKKFADYEYKLGNAENSVKVFERGVQA-------------------IPLSVDLWLSYLAF 122 (577)
T ss_pred HHHHHHHHHhhCc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------------------hhhHHHHHHHHHHH
Confidence 3344444444333 33445666777777888999999999988876 33344455444443
Q ss_pred HH-hcCChHHHHHHHHHHHHC-CCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---Hc
Q 008454 203 YA-HRKKFRNATDTFCQMRDY-GFL-PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC---KL 276 (565)
Q Consensus 203 ~~-~~g~~~~A~~~~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~---~~ 276 (565)
+. ..|+.+.....|+..... |.. .+...|-..+..-..++++.....+|+++++. ....|+....-|. ..
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhc
Confidence 33 457888888888888764 322 25667888888888889999999999998864 2233333322222 11
Q ss_pred ------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHH-------HH
Q 008454 277 ------GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV--ITFNTL-------IF 341 (565)
Q Consensus 277 ------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~l-------i~ 341 (565)
...+++.++-....+. ......++ .+..+=..+...+.+.+. ...+.+ -.
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~--~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~ 263 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAER-------------SKITHSQE--PLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEK 263 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhh-------------hhcccccC--hhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHH
Confidence 1222322222222211 00000011 111111111111101000 000011 11
Q ss_pred HHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 342 GFCKKGKLHEANRIFSEMKAT-------NVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLC 414 (565)
Q Consensus 342 ~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 414 (565)
++-......+..-.++.-... -..++..+|..-+..-...|+.+.+.-+|+...-- +..=...|-..+.-..
T Consensus 264 ~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~ 342 (577)
T KOG1258|consen 264 VYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWME 342 (577)
T ss_pred HHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHH
Confidence 122222222333333333221 11234567777888888999999999999887642 1112234444555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 008454 415 KEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQ-CVRKNSERAFQLYKSMIRSGCRPNKH-IFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 415 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A 492 (565)
..|+.+-|..++....+-..+ +......+-..+ -..|+++.|..+++...+. + |+.. .-..-+....+.|+.+.+
T Consensus 343 ~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~ 419 (577)
T KOG1258|consen 343 SSGDVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDA 419 (577)
T ss_pred HcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhh
Confidence 568888888877766554332 222222222223 3467999999999999876 2 5432 222233445567787777
Q ss_pred H---HHHHHHHHcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcc
Q 008454 493 A---EVLLEMLEKCMAPDSIILSELYS-----GLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAP 554 (565)
Q Consensus 493 ~---~~~~~~~~~~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 554 (565)
. +++...... -. +..+...+.- .+.-.++.+.|..++.++.+. +.++...|..+++-+.
T Consensus 420 ~~~~~l~s~~~~~-~~-~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 420 NYKNELYSSIYEG-KE-NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred hHHHHHHHHhccc-cc-CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 7 333333221 11 2222222222 233368899999999999765 3455556666665443
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.28 E-value=12 Score=35.12 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008454 329 IQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN---VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILT 405 (565)
Q Consensus 329 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 405 (565)
......+...++..-....+++.+..++-+++..- ..++...+ ++++. +-.-+.++++.++..=++.|+.||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchhh
Confidence 34445555555555555667777777776665431 12222111 22222 234466677777777777788888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
++.+|+.+.+.+++.+|..+.-.|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888887777777766554
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.13 E-value=0.92 Score=26.78 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIAL 248 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~ 248 (565)
+..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555555555555555553
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.00 E-value=7.3 Score=34.08 Aligned_cols=72 Identities=17% Similarity=0.042 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 350 HEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN---GIKVDILTYNALILGLCKEGKTKKA 422 (565)
Q Consensus 350 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A 422 (565)
++|.+.|-.+...+.--++.... .+..|....|.+++..++-...+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444444322222222 222333344555555555544432 2234555555555555555555544
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.77 E-value=19 Score=29.84 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=12.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCC
Q 008454 202 TYAHRKKFRNATDTFCQMRDYG 223 (565)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~ 223 (565)
.+...|+|.+|+.+|+.+.+.+
T Consensus 53 l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 53 LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHcCCHHHHHHHHHhhhccC
Confidence 3445566666666666665543
No 304
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=85.59 E-value=22 Score=37.53 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHH
Q 008454 141 ETHSIVLHILTKNRKFKSSESILRG 165 (565)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~a~~ll~~ 165 (565)
..|-..+..+.-.|.+++|..++..
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5666788899999999999999953
No 305
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.48 E-value=31 Score=32.09 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEML 395 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 395 (565)
++.....|..+|.+.+|.++-+.....+ +.+...+-.++..+...||--.+.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444566777777788877777776654 5666777777777777777666666666654
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.08 E-value=11 Score=35.38 Aligned_cols=104 Identities=11% Similarity=0.082 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008454 363 NVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNG---IKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNAS 439 (565)
Q Consensus 363 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 439 (565)
|.+....+...++..-....+++.+..++-++.... ..++...+ ..+.. +-.-+.++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 334445555555555555667777777777666431 11222111 12222 22335567777777777778888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSG 468 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 468 (565)
+++.+|..+.+.+++.+|..+.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888887777777766553
No 307
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.00 E-value=9 Score=33.37 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=60.7
Q ss_pred HHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 147 LHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSS-----PLVFDLLFKTYAHRKKFRNATDTFCQMRD 221 (565)
Q Consensus 147 ~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 221 (565)
.+-+.++|++..|.+-+...+.. |++. ...|..-..++.+.+.++.|++--.+..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-------------------cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie 162 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-------------------CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE 162 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-------------------CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh
Confidence 45566788888888888877776 3332 23455556677788888888887777777
Q ss_pred CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 222 YGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 222 ~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
.+.. ...+...-..+|.+...+++|+.-|+.+.+.
T Consensus 163 l~pt-y~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 163 LNPT-YEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred cCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 6532 2333444455666777777777777777665
No 308
>PRK09687 putative lyase; Provisional
Probab=84.85 E-value=35 Score=32.15 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHHcCC
Q 008454 402 DILTYNALILGLCKEGK 418 (565)
Q Consensus 402 ~~~~~~~li~~~~~~g~ 418 (565)
+..+-...+.++.+.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 34444444444444444
No 309
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.84 E-value=14 Score=32.18 Aligned_cols=92 Identities=16% Similarity=0.124 Sum_probs=58.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPN----ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (565)
.+-+.+.|++++|..-|..+.+.-..-. ...|..-..++.+.+.++.|++--...++.+ +........-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 3446777888888888887776522111 1234444456667777777777777777664 2223333344556777
Q ss_pred cCCHHHHHHHHHHHHHc
Q 008454 486 NEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~~ 502 (565)
...+++|+.-|.++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 77888888888888775
No 310
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.69 E-value=65 Score=35.04 Aligned_cols=330 Identities=13% Similarity=0.096 Sum_probs=166.4
Q ss_pred hhHHHHHHHHhhcCCCCCc----------HHHHHHHHHhcccC--CCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008454 157 KSSESILRGILDSDSFDLP----------SKLFDSILYSYRMC--DSS-PLVFDLLFKTYAHRKKFRNATDTFCQMRDYG 223 (565)
Q Consensus 157 ~~a~~ll~~~~~~~~~~~~----------~~~~~~~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 223 (565)
+....+++++...|.+-.+ +.+|...++.-... ++. ......-...+..+|..++|++---...
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~--- 374 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHALAAG--- 374 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHHHhCC---
Confidence 4455667777776644322 45555555542222 222 3344445556667777777765433322
Q ss_pred CCcCHHHHHHHHHHH----HcCCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHH--HHHcCCHHHHHHHHHHHHhCC
Q 008454 224 FLPIIESCNKFLSSL----LDSERVDIALGFYKEMRRNRISPNVYTL----NMVMHA--FCKLGIIERAVEVFKNMESMG 293 (565)
Q Consensus 224 ~~p~~~~~~~ll~~~----~~~~~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~--~~~~g~~~~a~~~~~~m~~~g 293 (565)
|...-..++.-+ ...++....+.+.+. + |+.... -.+..+ .....++++|..++.++...-
T Consensus 375 ---d~~~aa~lle~~~~~L~~~~~lsll~~~~~~-----l-P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l 445 (894)
T COG2909 375 ---DPEMAADLLEQLEWQLFNGSELSLLLAWLKA-----L-PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFL 445 (894)
T ss_pred ---CHHHHHHHHHhhhhhhhcccchHHHHHHHHh-----C-CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHh
Confidence 222323333222 222333332222222 1 222111 122233 235678999999998877542
Q ss_pred CCCCH-------HHHHHHH-HHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 294 FIPSV-------TTYNTLI-SGHCNKGLLSLAMKFKNLMEKN----GIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 294 ~~p~~-------~~~~~li-~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 361 (565)
..|+. ..++.|- ......|++++|.++.+..... -..+....+.++..+..-.|++++|..+.....+
T Consensus 446 ~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 446 KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 22221 1333332 2334578889999888877653 1234566777888888889999999999887765
Q ss_pred CCCCCCHHHHHHHHH-----HHHhcCC--hHHHHHHHHHHHHC-----CC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Q 008454 362 TNVSPNVVTYNTLIN-----GYGQVGN--SEMGASLYEEMLRN-----GI-KVDILTYNALILGLCKE-GKTKKAAYLVK 427 (565)
Q Consensus 362 ~~~~~~~~~~~~li~-----~~~~~g~--~~~A~~~~~~m~~~-----~~-~~~~~~~~~li~~~~~~-g~~~~A~~~~~ 427 (565)
..-.-+...+..+.. .+-..|. ..+....|...... .. .+-..++..+..++.+. +...++..-+.
T Consensus 526 ~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~ 605 (894)
T COG2909 526 MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIE 605 (894)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcch
Confidence 422334433332221 2334552 22233333333221 10 11233445555555542 12223333333
Q ss_pred HHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 008454 428 DLDKNSLVPNAST--YSALITGQCVRKNSERAFQLYKSMIRSGC----RPNKHIFEMLMST--FCQNEDFDRAAEVLLE 498 (565)
Q Consensus 428 ~~~~~~~~p~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~~~----~p~~~~~~~li~~--~~~~g~~~~A~~~~~~ 498 (565)
.-......|-... +..|+......|++++|...++++..... .++..+-...+.. ....|+.+.+...+.+
T Consensus 606 ~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 606 VGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222222222222 23677888889999999999988876422 2232222222222 2345777777666655
No 311
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.17 E-value=43 Score=32.61 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=31.0
Q ss_pred HHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 146 VLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRD 221 (565)
Q Consensus 146 l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 221 (565)
.+.+.-+.|+|+...+.+...... .++...|..+... +.|+++++....+.+..
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--------------------~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--------------------SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--------------------ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 356667788888755554433322 1122333333333 77888888887777655
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.79 E-value=2.7 Score=24.42 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
+|..+...|...|++++|++.|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4566667777777777777777776653
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.78 E-value=3 Score=25.54 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 509 IILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 509 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777888888888888888877653
No 314
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.45 E-value=16 Score=37.52 Aligned_cols=135 Identities=11% Similarity=0.042 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
.+....+++.+.+.|-.++|+++-- ....-| ....+.|+++.|.++..+.
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s~--------------------------D~d~rF----elal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELST--------------------------DPDQRF----ELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcCC--------------------------Chhhhh----hhhhhcCcHHHHHHHHHhh
Confidence 4556677777777777777766421 111112 3334557888887766554
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008454 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVT 299 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 299 (565)
.+..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-- 725 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-- 725 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c--
Confidence 2556788888888888888888888876543 445666677777776666665666665533 2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 008454 300 TYNTLISGHCNKGLLSLAMKFKNLME 325 (565)
Q Consensus 300 ~~~~li~~~~~~g~~~~a~~~~~~m~ 325 (565)
...-+|...|+++++.+++..-.
T Consensus 726 ---~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 726 ---LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred ---hHHHHHHHcCCHHHHHHHHHhcC
Confidence 23344666788888887776543
No 315
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.60 E-value=15 Score=27.77 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 455 ERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELY 515 (565)
Q Consensus 455 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 515 (565)
-++.+-++.+....+.|++.+..+.+.+|.+.+|+..|.++|+....+ ...+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 345555555555666777777777777777777777777777766544 222334555443
No 316
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.24 E-value=11 Score=28.76 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008454 456 RAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYS 516 (565)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 516 (565)
+..+-+..+....+.|++.+..+.+.+|.+.+++..|.++|+.+..+ ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 44555556666667788888888888888888888888888777655 2222226665543
No 317
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.72 E-value=38 Score=30.14 Aligned_cols=178 Identities=14% Similarity=0.036 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHH
Q 008454 120 YVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLL 199 (565)
Q Consensus 120 ~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (565)
+..|.-=|..+....| .-++.|+.+.-.+...|+++.|.+.|+...+.. |....++-.-
T Consensus 81 ~~LAR~DftQaLai~P--~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-------------------p~y~Ya~lNR 139 (297)
T COG4785 81 RALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------------------PTYNYAHLNR 139 (297)
T ss_pred HHHHhhhhhhhhhcCC--CcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-------------------CcchHHHhcc
Confidence 4455544555555443 457889999999999999999999999998873 2222222212
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFL-PIIESCNKFLSSLLDSERVDIALGFYKE-MRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~A~~~~~~-m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
.-++.--|++.-|.+-|-..-..+.. |=...|-.+.. ..-++.+|..-+.+ ..+ .|..-|...|-.+.- |
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-g 211 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-G 211 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-h
Confidence 22333458888888877777665533 11222322222 23345555443333 222 243334333322221 1
Q ss_pred CHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008454 278 IIERAVEVFKNMESMGFI------PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN 327 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~g~~------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 327 (565)
++. ...+++.+....-. .=..||--|...+...|+.++|..+|+....+
T Consensus 212 kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 212 KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111 11233333321110 01356667777788888888888888877765
No 318
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.65 E-value=1.4e+02 Score=36.63 Aligned_cols=319 Identities=12% Similarity=0.019 Sum_probs=160.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 198 LLFKTYAHRKKFRNATDTFCQM----RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAF 273 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 273 (565)
.+..+-.+++.+.+|+..++.- .+.. .....+..+...|..-+++|....+...-.. .|+ ...-|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 4556677888999999999984 2211 1233444455588888999888777764221 122 22334456
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHH
Q 008454 274 CKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTL-IFGFCKKGKLHEA 352 (565)
Q Consensus 274 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A 352 (565)
...|++..|...|+.+.+.+.. ...+++-++......|.++.+.-..+-...+ ..+....++.+ +.+-=+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 6789999999999999876422 3667777777777777877777755555443 12233333333 3444566777776
Q ss_pred HHHHHHHHhCCCCCCHHHHHH--HHHHHHhcC--ChHHHHHHHHHHHHC--------CCCC-CHHHHHHHHHHHHHcCCH
Q 008454 353 NRIFSEMKATNVSPNVVTYNT--LINGYGQVG--NSEMGASLYEEMLRN--------GIKV-DILTYNALILGLCKEGKT 419 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g--~~~~A~~~~~~m~~~--------~~~~-~~~~~~~li~~~~~~g~~ 419 (565)
...+. .. +..+|.. ++....+.. |.-.-.+..+.+.+. +..- =...|..++....-..-
T Consensus 1538 e~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el- 1609 (2382)
T KOG0890|consen 1538 ESYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL- 1609 (2382)
T ss_pred hhhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-
Confidence 66654 11 2222222 222222222 111111222222221 1110 01233333333221111
Q ss_pred HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHH
Q 008454 420 KKAAYLVKDLDK-NSLVPNASTYSALITGQCVRKNSERAFQLY-KSMIRSGCRP-----NKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 420 ~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~~~~~~A~~~~-~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A 492 (565)
+...+.+..... ....-+...|..-+..-....+..+-+--+ +.+......| -..+|-...+...+.|.++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 111111111100 000001111211111111111111111111 1111111111 235677777777778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 493 AEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
...+-.+.+.+ -...+-.....+...|+...|+.++++-.+.
T Consensus 1690 ~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1690 QNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 88877776654 2344556667788888888888888887755
No 319
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.62 E-value=4 Score=23.58 Aligned_cols=28 Identities=14% Similarity=0.244 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
.+..+...|...|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666777777777777777766553
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.36 E-value=27 Score=35.98 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=56.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 379 GQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 379 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
.+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34566666666554443 445567777777777777777776665442 445555555666655555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
.+-....+.| ..| ...-++...|+++++.+++.+
T Consensus 713 ~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQG-KNN-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHh
Confidence 5555555444 222 222345566777777666643
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.20 E-value=82 Score=33.71 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=92.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFL-PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
++.+.+.+.+++|+++-+.....-.. .-...+..++..+...|++++|-...-.|... +..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 67788889999999887765542211 03456778888899999999999888888754 56666666666666655
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH------------------HHHCCCCCCHHHHHHHH
Q 008454 279 IERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNL------------------MEKNGIQPNVITFNTLI 340 (565)
Q Consensus 279 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~------------------m~~~g~~~~~~~~~~li 340 (565)
..... .-+.......+...|..++..+.. .+...-.++... ..+. .-+...-..|+
T Consensus 439 l~~Ia---~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La 512 (846)
T KOG2066|consen 439 LTDIA---PYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLA 512 (846)
T ss_pred cchhh---ccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHH
Confidence 44322 222222222455667777766665 222221111111 1111 11223334578
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 008454 341 FGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~ 361 (565)
..|...+++..|++++-.+++
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHccChHHHHHHHHhccC
Confidence 888889999999988876653
No 322
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.74 E-value=57 Score=35.92 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHH----
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATN---VSPNVVTYNTLINGYGQVGNS--EMGASLYEEMLRNGIKVDILTY---- 406 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~~~~~~---- 406 (565)
|..|+..|...|+.++|+++|.+..... ...-...+..+++.+.+.+.. +-.+++-+...+....-....+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5666677777777777777777665521 000111222234444333333 3333333322222111000000
Q ss_pred --------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 407 --------NALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCV 450 (565)
Q Consensus 407 --------~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (565)
..-+-.|+.....+-+...++.+....-.++....+.++.-|+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 11223345556666677777776655444555566666655543
No 323
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.67 E-value=5.6 Score=23.03 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=6.7
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 008454 481 STFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~ 499 (565)
.++...|++++|+..|+++
T Consensus 9 ~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 9 NAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHHH
Confidence 3333333333333333333
No 324
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.35 E-value=48 Score=30.47 Aligned_cols=159 Identities=8% Similarity=0.031 Sum_probs=84.1
Q ss_pred ChHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHH
Q 008454 119 DYVLSLEFFTWVQTHKPSSL--TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVF 196 (565)
Q Consensus 119 ~~~~al~~f~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (565)
.++.|+.-|+.+..-.|-.. ...+...++.+..+.+++++..+.+.+++.. +.+......+....
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY-------------IkSAVTrNySEKsI 108 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY-------------IKSAVTRNYSEKSI 108 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-------------HHHHHhccccHHHH
Confidence 67888888888777654332 3467778888888889888888777766543 11101112244455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC-----CC------C
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDY-----GFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN-----RI------S 260 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-----~~------~ 260 (565)
|.++.......+.+--...|+.-.+. +-..-..+-..+...|...+.+.+..++++++... |- .
T Consensus 109 N~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGt 188 (440)
T KOG1464|consen 109 NSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGT 188 (440)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccc
Confidence 66666555555544444444432221 00011122234555666666666666666665431 10 0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 261 PNVYTLNMVMHAFCKLGIIERAVEVFKNME 290 (565)
Q Consensus 261 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (565)
.-...|..=|..|....+-.+...+|++..
T Consensus 189 QLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 189 QLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 012344444555555555555555555443
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.19 E-value=33 Score=28.50 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=24.5
Q ss_pred CCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 241 SERVDIALGFYKEMRRNRIS-PNVYTLNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 241 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
.++.+++..+++.|.-..+. +...++...+ +...|++++|.++|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555432211 2223333333 33556666666666666554
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.19 E-value=4.9 Score=24.50 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
.+++.|...|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777788888888888888877754
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.04 E-value=89 Score=33.41 Aligned_cols=407 Identities=14% Similarity=0.155 Sum_probs=202.0
Q ss_pred HHHhhcCChHHHHHHHHHHhhcCCCCCCH-----HHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhc
Q 008454 112 VLLKVQKDYVLSLEFFTWVQTHKPSSLTL-----ETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSY 186 (565)
Q Consensus 112 ~l~~~~~~~~~al~~f~~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~ 186 (565)
++.....+.+.|....+.+...... ++. .....++.++.+.+... |...+++.++.-.- +
T Consensus 68 iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-------------~ 132 (608)
T PF10345_consen 68 ILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-------------Y 132 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-------------c
Confidence 3445566888888888876543322 222 22234556666555555 88888887765110 0
Q ss_pred ccCCCChHHHHHH-HHHHHhcCChHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHH--cCCChHHHHHHHHHHHHCCC-
Q 008454 187 RMCDSSPLVFDLL-FKTYAHRKKFRNATDTFCQMRDYG---FLPIIESCNKFLSSLL--DSERVDIALGFYKEMRRNRI- 259 (565)
Q Consensus 187 ~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~ll~~~~--~~~~~~~A~~~~~~m~~~~~- 259 (565)
+ ...-...|..+ +..+...+++..|++.++.+...- ..|-+.++..++.++. ..+..+++.+.++++.....
T Consensus 133 ~-~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~ 211 (608)
T PF10345_consen 133 G-HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARS 211 (608)
T ss_pred C-chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Confidence 0 11122334444 333434489999999999886542 2334455555555544 34556777777777643211
Q ss_pred --------CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHh-------CC-CC----------------------CCH-
Q 008454 260 --------SPNVYTLNMVMHAFC--KLGIIERAVEVFKNMES-------MG-FI----------------------PSV- 298 (565)
Q Consensus 260 --------~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~-------~g-~~----------------------p~~- 298 (565)
.|-..+|..+++.++ ..|++..+...++++.+ .. .+ +..
T Consensus 212 ~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f 291 (608)
T PF10345_consen 212 LQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVF 291 (608)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEE
Confidence 235667777777655 56777777666655532 10 00 011
Q ss_pred --------HHHHHHHH--HHHhcCChhHHHHHHHH-------HH-HCCCCCC--------HHHHHHHHH---------HH
Q 008454 299 --------TTYNTLIS--GHCNKGLLSLAMKFKNL-------ME-KNGIQPN--------VITFNTLIF---------GF 343 (565)
Q Consensus 299 --------~~~~~li~--~~~~~g~~~~a~~~~~~-------m~-~~g~~~~--------~~~~~~li~---------~~ 343 (565)
....-++. ..+..|..++|.+++++ .. .....+. ...|...+. ..
T Consensus 292 ~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~ 371 (608)
T PF10345_consen 292 SWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN 371 (608)
T ss_pred eecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 11111222 22334544455555544 33 1111111 112222221 23
Q ss_pred HHcCCHHHHHHHHHHHHhCCC-CCC-------HHHHHHHHHHHHhcCChHHHHHHHH--------HHHHCCCCCCHHHHH
Q 008454 344 CKKGKLHEANRIFSEMKATNV-SPN-------VVTYNTLINGYGQVGNSEMGASLYE--------EMLRNGIKVDILTYN 407 (565)
Q Consensus 344 ~~~g~~~~A~~~~~~m~~~~~-~~~-------~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~~~~~~~~ 407 (565)
+-.+++..|.+.++.+....- .|+ ...+....-.+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 456889999999998886421 111 2222223333445699999999997 444555554555443
Q ss_pred HH--HHHHHH--cCCHHH--HHHHHHHHHhC-CCCC--CHHHHHHH-HHHHHhcCC--HHHHHHHHHHHHHc---CCCCC
Q 008454 408 AL--ILGLCK--EGKTKK--AAYLVKDLDKN-SLVP--NASTYSAL-ITGQCVRKN--SERAFQLYKSMIRS---GCRPN 472 (565)
Q Consensus 408 ~l--i~~~~~--~g~~~~--A~~~~~~~~~~-~~~p--~~~~~~~l-i~~~~~~~~--~~~A~~~~~~m~~~---~~~p~ 472 (565)
.+ +..+.. ....++ +..+++.+... .-.| +..+++.+ +.++..... ..++...+.+.++. ....+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 32 111222 222333 67777766542 1122 23333333 333322211 12333333222221 01111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHH
Q 008454 473 ---KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMA-P--DSIILS-----ELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 473 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p--~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
..+++.+...+. .|+..+..+.........-+ | ....|. .+.+.+...|+.++|.....+..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 223343333343 67777766555444322111 2 333453 33445777899999999887764
No 328
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.52 E-value=75 Score=32.24 Aligned_cols=162 Identities=17% Similarity=0.180 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGL 413 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (565)
....+++..+..+-++.-+..+-.+|..-| -+...|..++++|... ..++-..+|+++.+..+. |...-..|+.-|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 333444444544444454555555554433 2344455555555444 334445555555544332 232233333333
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcC
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVP-----NASTYSALITGQCVRKNSERAFQLYKSMIRS-GCRPNKHIFEMLMSTFCQNE 487 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g 487 (565)
-+ ++.+.+...|..+...-+.- -...|..|... -..+.+..+.+...+... |..--...+..+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 33 44445555554443321110 01123333221 123344444444444332 22222333444444555555
Q ss_pred CHHHHHHHHHHHHHc
Q 008454 488 DFDRAAEVLLEMLEK 502 (565)
Q Consensus 488 ~~~~A~~~~~~~~~~ 502 (565)
++++|++++..+++.
T Consensus 220 N~~eai~Ilk~il~~ 234 (711)
T COG1747 220 NWTEAIRILKHILEH 234 (711)
T ss_pred CHHHHHHHHHHHhhh
Confidence 555555555555544
No 329
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.51 E-value=1e+02 Score=33.69 Aligned_cols=262 Identities=17% Similarity=0.112 Sum_probs=141.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC---C-----------CCCCHHHHH----HHHHH--HHhcCChhHHHHHHHHHHHCC
Q 008454 269 VMHAFCKLGIIERAVEVFKNMESM---G-----------FIPSVTTYN----TLISG--HCNKGLLSLAMKFKNLMEKNG 328 (565)
Q Consensus 269 li~~~~~~g~~~~a~~~~~~m~~~---g-----------~~p~~~~~~----~li~~--~~~~g~~~~a~~~~~~m~~~g 328 (565)
.|...++.|+++.|..++++.... + --|+....+ .+..+ .....++++|..++.++...-
T Consensus 366 AI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l 445 (894)
T COG2909 366 AIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFL 445 (894)
T ss_pred HHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHh
Confidence 345566788888888888776211 1 012222111 12222 234688999999998887542
Q ss_pred CCCCH-------HHHHHHH-HHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 329 IQPNV-------ITFNTLI-FGFCKKGKLHEANRIFSEMKAT----NVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 329 ~~~~~-------~~~~~li-~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
..|+. ..++.+- ......|++++|.++.+..... -..+....+..+..+..-.|++++|..+..+..+
T Consensus 446 ~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 446 KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 22221 2333332 3344578999999988877653 2334556677788888889999999998887665
Q ss_pred CCCCCCHHHHH---HH--HHHHHHcCCHH--HHHHHHHHHHhCCC--CC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 397 NGIKVDILTYN---AL--ILGLCKEGKTK--KAAYLVKDLDKNSL--VP----NASTYSALITGQCVRKNSERAFQLYKS 463 (565)
Q Consensus 397 ~~~~~~~~~~~---~l--i~~~~~~g~~~--~A~~~~~~~~~~~~--~p----~~~~~~~li~~~~~~~~~~~A~~~~~~ 463 (565)
..-..+...+. .+ ...+...|+.. +....|........ +| -..++..+..++.+ .+.+..-...
T Consensus 526 ~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~ 602 (894)
T COG2909 526 MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARL 602 (894)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhh
Confidence 42223333332 22 23345566332 23333333322110 11 12344445555544 3333322222
Q ss_pred HHHcC--CCCC--HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHH--HHHhcCCHHHHHHHH
Q 008454 464 MIRSG--CRPN--KHIF--EMLMSTFCQNEDFDRAAEVLLEMLEKCMAP----DSIILSELYS--GLHHCGKDELAMKLF 531 (565)
Q Consensus 464 m~~~~--~~p~--~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~li~--~~~~~g~~~~A~~~~ 531 (565)
-.+.| ..|. ...+ ..|+......|+.++|...++++......+ +...-...+. .....|+..++....
T Consensus 603 ~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l 682 (894)
T COG2909 603 GIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWL 682 (894)
T ss_pred cchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHH
Confidence 22211 1222 2222 366777888999999999999887653332 2222222222 234578888777766
Q ss_pred HH
Q 008454 532 RK 533 (565)
Q Consensus 532 ~~ 533 (565)
.+
T Consensus 683 ~~ 684 (894)
T COG2909 683 LK 684 (894)
T ss_pred Hh
Confidence 55
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.43 E-value=94 Score=33.31 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=33.7
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 008454 117 QKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDS 169 (565)
Q Consensus 117 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~ 169 (565)
++.|+.|++.-+......+..........++..|...|++++|-.+.-.|...
T Consensus 369 ~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn 421 (846)
T KOG2066|consen 369 KKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN 421 (846)
T ss_pred hhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc
Confidence 44566777665544443332224566677777888888888888777776654
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.42 E-value=22 Score=30.58 Aligned_cols=101 Identities=17% Similarity=0.078 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh---CCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHH
Q 008454 122 LSLEFFTWVQTHKPSSLTLETHSIVLHILTK---NRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDL 198 (565)
Q Consensus 122 ~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (565)
.|.+-.+-....+| .+.+.+..-..+|.. .++..++..++++.+.. |+..+.. .|....++..
T Consensus 9 ~ark~aea~y~~nP--~DadnL~~WG~ALLELAqfk~g~es~~miedAisK---------~eeAL~I---~P~~hdAlw~ 74 (186)
T PF06552_consen 9 HARKKAEAAYAKNP--LDADNLTNWGGALLELAQFKQGPESKKMIEDAISK---------FEEALKI---NPNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH---------HHHHHHH----TT-HHHHHH
T ss_pred HHHHHHHHHHHhCc--HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH---------HHHHHhc---CCchHHHHHH
Confidence 34444444333333 455555554444443 34445566666666554 2222221 4555667777
Q ss_pred HHHHHHhcCC-----------hHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008454 199 LFKTYAHRKK-----------FRNATDTFCQMRDYGFLPIIESCNKFLSSL 238 (565)
Q Consensus 199 li~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 238 (565)
+..+|...+. +++|.+.|++.... .|+...|+.-+...
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 7777765542 33444444444432 36666666555554
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.35 E-value=31 Score=30.30 Aligned_cols=41 Identities=10% Similarity=-0.120 Sum_probs=18.2
Q ss_pred CChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 312 GLLSLAMKFKNLMEKN---GIQPNVITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 312 g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A 352 (565)
.+.+++..++....+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444443321 1133444455555555555554444
No 333
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.57 E-value=17 Score=32.17 Aligned_cols=55 Identities=16% Similarity=0.054 Sum_probs=25.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 304 LISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEM 359 (565)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 359 (565)
-++.+.+.+..++++...++-.+.. +.|...-..++..+|-.|+|++|..-++-.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444445555555555544444432 123344444455555555555555444433
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.55 E-value=16 Score=32.32 Aligned_cols=77 Identities=18% Similarity=0.155 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS--GCRPNKHIFEMLMST 482 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~ 482 (565)
|.+.-+..+.+.+.+.+++.+.++-.+.+.. |...-..+++.+|-.|++++|..-++-.-+. ...+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455677788889999999999888776543 6667788899999999999998777766553 123445667776654
No 335
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.48 E-value=56 Score=32.86 Aligned_cols=75 Identities=19% Similarity=0.142 Sum_probs=36.5
Q ss_pred HcCCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCh
Q 008454 239 LDSERVDIALGFYKEMRRNRISPNVYT--LNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVT--TYNTLISGHCNKGLL 314 (565)
Q Consensus 239 ~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~ 314 (565)
+..|+.+.+.. +.+.|..++... ....+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 34455544433 334566555432 234455555666654 344444556554432 112344555566776
Q ss_pred hHHHHHH
Q 008454 315 SLAMKFK 321 (565)
Q Consensus 315 ~~a~~~~ 321 (565)
+.+..++
T Consensus 82 ~~v~~Ll 88 (413)
T PHA02875 82 KAVEELL 88 (413)
T ss_pred HHHHHHH
Confidence 5544444
No 336
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.35 E-value=7.3 Score=22.39 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=7.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 008454 480 MSTFCQNEDFDRAAEVLLEML 500 (565)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~ 500 (565)
...+...|++++|.+.+++.+
T Consensus 8 g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 8 GQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 333334444444444444333
No 337
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.16 E-value=0.86 Score=37.92 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=51.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
++..+.+.+.+......++.+...+...+....+.++..|++.++.+...++++.. +.+-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666667777777777888776665556777788888888887777777766521 11233445555555666
Q ss_pred HHHHHHHHHH
Q 008454 279 IERAVEVFKN 288 (565)
Q Consensus 279 ~~~a~~~~~~ 288 (565)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6665555544
No 338
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.91 E-value=1.8e+02 Score=35.75 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=84.6
Q ss_pred HHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHH-HHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCC
Q 008454 113 LLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLH-ILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDS 191 (565)
Q Consensus 113 l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (565)
.....+.|..|+-.++.-.....-....+.+..++. +++..++++...-+...-..
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----------------------- 1448 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----------------------- 1448 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----------------------
Confidence 344556777777666652110000112233333444 77777887776655542111
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH-HHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLN-MVM 270 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~li 270 (565)
++..+ .-|-.....|+++.|...|+.+.+.+.. ....++.++......+.++.++-..+....+. .+....++ .=+
T Consensus 1449 ~~sl~-~qil~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~ 1525 (2382)
T KOG0890|consen 1449 DPSLY-QQILEHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGV 1525 (2382)
T ss_pred CccHH-HHHHHHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHH
Confidence 11222 2344456679999999999999987632 46678888888888888888877666554331 22222232 223
Q ss_pred HHHHHcCCHHHHHHHHH
Q 008454 271 HAFCKLGIIERAVEVFK 287 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~ 287 (565)
.+--+.++++.......
T Consensus 1526 eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1526 EAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHhhhcchhhhhhhhh
Confidence 33356666766665554
No 339
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.10 E-value=0.61 Score=38.86 Aligned_cols=82 Identities=11% Similarity=0.087 Sum_probs=37.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDF 489 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 489 (565)
+..+.+.+.......+++.+...+..-+....+.++..|++.++.++.+++++.. +..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 4444445555555555555554443334555555555555555445544444410 111123344444555555
Q ss_pred HHHHHHHHH
Q 008454 490 DRAAEVLLE 498 (565)
Q Consensus 490 ~~A~~~~~~ 498 (565)
+++..++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555554443
No 340
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.92 E-value=65 Score=32.42 Aligned_cols=107 Identities=16% Similarity=0.031 Sum_probs=65.1
Q ss_pred HHHhcCChHHHHHHHHHHHH---CCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHh-------CCCCCC----
Q 008454 377 GYGQVGNSEMGASLYEEMLR---NGIKVDI-----LTYNALILGLCKEGKTKKAAYLVKDLDK-------NSLVPN---- 437 (565)
Q Consensus 377 ~~~~~g~~~~A~~~~~~m~~---~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~p~---- 437 (565)
.++-.|++.+|.+++...-- .|...+. ..+|.|.-...+.|.+..+..+|....+ .|+.|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 45667888888887765422 1221121 1235555556667777777666666543 454442
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 438 -------ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485 (565)
Q Consensus 438 -------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (565)
..+||. .-.|...|++-.|.+.|.+.+.. +.-++..|-.|..+|.-
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 123443 23456788888888888888764 45677888888877753
No 341
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.88 E-value=76 Score=30.87 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=30.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 235 LSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMES 291 (565)
Q Consensus 235 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (565)
..+..+.|+++...+........ .++...+..+... ..|+++++...++....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45666777777754544444322 2344444444433 67777777777766654
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.59 E-value=4 Score=22.19 Aligned_cols=22 Identities=9% Similarity=-0.106 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~ 217 (565)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3456666777777777776654
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.70 E-value=92 Score=31.27 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=82.1
Q ss_pred HHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 008454 164 RGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSER 243 (565)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 243 (565)
.+....|.+..+.+.....++.|++ +|.............|+++.+.+.+...... +.....+...+++...+.++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 3444445554444444455555544 4444444445566779999999988766543 12355677888999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 244 VDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 244 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
++.|...-+.|....++ +...........-..|-++++.-.++++...
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 99999999999887765 4444444333444567788888888887654
No 344
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.23 E-value=75 Score=30.01 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=74.5
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH----hCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCC
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILT----KNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDS 191 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (565)
...++..+.+.+..+.... +......+...+. ..++...|..++....+.|
T Consensus 53 ~~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g--------------------- 107 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG--------------------- 107 (292)
T ss_pred ccccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---------------------
Confidence 3446777777777665522 1233333333333 3345666777777666654
Q ss_pred ChHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHCCCC
Q 008454 192 SPLVFDLLFKTYAH----RKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSE-------RVDIALGFYKEMRRNRIS 260 (565)
Q Consensus 192 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-------~~~~A~~~~~~m~~~~~~ 260 (565)
.+.....|...|.. ..+..+|...|++..+.|..+...+...+...+..-+ +...|...|.+.-..+
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 23333344444444 3377788888888877775432222444444443321 1224555555555544
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCC
Q 008454 261 PNVYTLNMVMHAFCK----LGIIERAVEVFKNMESMG 293 (565)
Q Consensus 261 p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 293 (565)
+......+...|.. ..+.++|...|....+.|
T Consensus 186 -~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 186 -NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred -CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 22233333322221 224555555555555544
No 345
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.18 E-value=6.7 Score=24.79 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=11.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 008454 479 LMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
+..+|...|+.+.|.+++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555443
No 346
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.87 E-value=8.3 Score=22.23 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRD 221 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 221 (565)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455667777777777777777777655
No 347
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=74.66 E-value=66 Score=29.07 Aligned_cols=137 Identities=15% Similarity=0.258 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR 451 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (565)
...+..|.+.-++.-|-...+++.+ .... ...+--|.+..+..--.++.+-....++.-+..-..+++ +...
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiE-----PIQS-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~ 205 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIE-----PIQS-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQ 205 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhh-----hHHh-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhcc
Confidence 3345555555555555555555443 1122 233334555555544455555555555544444444444 4567
Q ss_pred CCHHHHHHHHHHHHHc-C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 452 KNSERAFQLYKSMIRS-G-----------CRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGL 518 (565)
Q Consensus 452 ~~~~~A~~~~~~m~~~-~-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 518 (565)
|+..+|+..++.-... | -.|.+.....++..|. .+++++|.+++.++-+.|+.|... .+.+.+.+
T Consensus 206 GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred chHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 8888888887766542 1 1466666677776654 578999999999999988886443 34444444
No 348
>PRK11619 lytic murein transglycosylase; Provisional
Probab=74.29 E-value=1.3e+02 Score=32.33 Aligned_cols=229 Identities=8% Similarity=-0.049 Sum_probs=106.8
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHH--HHHHHHHHHHCCCCCCHHHHH
Q 008454 190 DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDI--ALGFYKEMRRNRISPNVYTLN 267 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~--A~~~~~~m~~~~~~p~~~~~~ 267 (565)
+.+...--..+.+....|+.++|.+..+.+-..|.. ....|+.++..+.+.|.... .++-++.+...| +...-.
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~ 201 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVT 201 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 334555556677777888888787777777666544 56778888888776665433 222233333322 222222
Q ss_pred HHHHHHHH------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHCC-CCCC
Q 008454 268 MVMHAFCK------------LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHC--NKGLLSLAMKFKNLMEKNG-IQPN 332 (565)
Q Consensus 268 ~li~~~~~------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g-~~~~ 332 (565)
.+...+.. ..+...+...+. .+.++...-..++.++. ...+.+.|..++....... ..+.
T Consensus 202 ~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~ 276 (644)
T PRK11619 202 YLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNED 276 (644)
T ss_pred HHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHH
Confidence 22221100 011111111111 11122211111111111 2345567777777654332 2211
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 333 --VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALI 410 (565)
Q Consensus 333 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 410 (565)
...+..+.......+..+++...+....... .+......-+....+.++++.+...+..|....- -...-...+.
T Consensus 277 ~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~a 353 (644)
T PRK11619 277 QRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQA 353 (644)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHH
Confidence 1222333322223222445555555433221 2333333334444466777776666666644322 2344455666
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 008454 411 LGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~ 430 (565)
.++...|+.++|...|+.+.
T Consensus 354 Ra~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 354 DLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 66666777777777776653
No 349
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.74 E-value=10 Score=21.81 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 510 ILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 510 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566667777777777777776543
No 350
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.70 E-value=1.3e+02 Score=32.13 Aligned_cols=193 Identities=14% Similarity=0.125 Sum_probs=114.6
Q ss_pred ChHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHH-hCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 119 DYVLSLEFFTWVQTHKPSSLT--LETHSIVLHILT-KNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 119 ~~~~al~~f~~~~~~~~~~~~--~~~~~~l~~~l~-~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
-...|++.++.+.++...+|. ..++..++.+|. ...+++.|+..+++....-.. ..+.+.-. ..
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~---~~~~d~k~----------~~ 102 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER---HRLTDLKF----------RC 102 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchHHHHH----------HH
Confidence 345678888888765544443 345566677776 678999999999987655211 11111111 12
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCcCHHHHHHH-HHHHHcCCChHHHHHHHHHHHHCC---CCCCHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDY----GFLPIIESCNKF-LSSLLDSERVDIALGFYKEMRRNR---ISPNVYTLN 267 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l-l~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~ 267 (565)
...+++.+.+.+... |....++..+. +..+-...+..+ +..+...+++..|.+.++.+...- ..|-...+.
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 335677777776666 88888886553 222223334444 333334479999999998886532 233445555
Q ss_pred HHHHHHH--HcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHH
Q 008454 268 MVMHAFC--KLGIIERAVEVFKNMESMG---------FIPSVTTYNTLISGHC--NKGLLSLAMKFKNLME 325 (565)
Q Consensus 268 ~li~~~~--~~g~~~~a~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~ 325 (565)
.++.+.. +.+..+++.+.++.+.... ..|-..+|..+++.++ ..|+++.+...++++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555543 3455677777777664321 1235666777776655 5677667766655543
No 351
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.41 E-value=63 Score=28.28 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=50.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 446 TGQCVRKNSERAFQLYKSMIRSGCRPNKHIFE-----MLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHH 520 (565)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 520 (565)
..+...+++++|..-++..+.. |....+. .|.......|.+|+|+..++...+.++ .......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 4455667777777766666543 2222222 233445566777777777766554432 22233444566777
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 008454 521 CGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 521 ~g~~~~A~~~~~~m~~~g 538 (565)
.|+.++|+.-|++..+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 777777777777776665
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.16 E-value=8.8 Score=24.27 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=11.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 514 LYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 514 li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
|..+|...|+.+.|++++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344455555555555555555433
No 353
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.07 E-value=70 Score=32.14 Aligned_cols=208 Identities=13% Similarity=0.103 Sum_probs=102.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcC
Q 008454 202 TYAHRKKFRNATDTFCQMRDYGFLPIIES--CNKFLSSLLDSERVDIALGFYKEMRRNRISPNVY--TLNMVMHAFCKLG 277 (565)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g 277 (565)
..++.|+.+-+ +.+.+.|..++... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34455776554 44455677665433 2334555566777654 44455666555432 1234566677888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHH
Q 008454 278 IIERAVEVFKNMESMGFIPSVT---TYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVIT--FNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A 352 (565)
+.+.+..+++ .|...+.. .-.+.+...+..|+. ++++.+.+.|..++... -.+.+...+..|+.+-+
T Consensus 80 ~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 80 DVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred CHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 8877655554 33222111 112344455666765 44555566665554321 12344555667776654
Q ss_pred HHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHH
Q 008454 353 NRIFSEMKATNVSPN---VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTY---NALILGLCKEGKTKKAAYLV 426 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~ 426 (565)
.-++ +.|..++ ..-.+.+ ...+..|+.+ +.+.+.+.|..++.... ..++...+..|+.+ +.
T Consensus 152 ~~Ll----~~g~~~~~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv 218 (413)
T PHA02875 152 ELLI----DHKACLDIEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IV 218 (413)
T ss_pred HHHH----hcCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HH
Confidence 4443 3443332 2222233 3334556654 34445556665543221 23344344556554 34
Q ss_pred HHHHhCCCCCCH
Q 008454 427 KDLDKNSLVPNA 438 (565)
Q Consensus 427 ~~~~~~~~~p~~ 438 (565)
+.+.+.|..++.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 444556666554
No 354
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=72.38 E-value=55 Score=27.15 Aligned_cols=82 Identities=11% Similarity=0.102 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHH
Q 008454 476 FEMLMSTFCQNEDFDRAAEVLLEMLEKC-----MAPDSIILSELYSGLHHCGK-DELAMKLFRKMEIRGLLPKGFDKLRT 549 (565)
Q Consensus 476 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 549 (565)
.+.++.-....+++.....+++.+.... -..+...|+.++.+.....- ---+..+|..|.+.+.+++...|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3445554455555555555555552210 01244566777777755444 33456677777777777777777777
Q ss_pred HhhcccCC
Q 008454 550 INCAPENG 557 (565)
Q Consensus 550 l~~~~~~g 557 (565)
+++|.+..
T Consensus 122 i~~~l~g~ 129 (145)
T PF13762_consen 122 IKAALRGY 129 (145)
T ss_pred HHHHHcCC
Confidence 77776653
No 355
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.37 E-value=12 Score=35.51 Aligned_cols=89 Identities=13% Similarity=-0.057 Sum_probs=45.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVP-NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNED 488 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 488 (565)
.+-|.++|.+++|++.|...... .| |.++|..-..+|.+.+.+..|..=-..++..+ ..-...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 45566677777777777665543 23 56666666666666666665555444444321 1111223333333333444
Q ss_pred HHHHHHHHHHHHH
Q 008454 489 FDRAAEVLLEMLE 501 (565)
Q Consensus 489 ~~~A~~~~~~~~~ 501 (565)
..+|.+-++..++
T Consensus 181 ~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 181 NMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHhHHHHHh
Confidence 4455444444444
No 356
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.27 E-value=84 Score=29.24 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC-----C-CcC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHC--CCCC
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYG-----F-LPI-------IESCNKFLSSLLDSERVDIALGFYKEMRRN--RISP 261 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~-----~-~p~-------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~p 261 (565)
..-.+.+.-..|+..|+++-++-.+.= . .++ ...+..=|.+++..+++.+++...-+.-+. .++|
T Consensus 39 e~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPp 118 (309)
T PF07163_consen 39 EEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH
Confidence 333444555678888887777654320 0 111 122344467777777777776665554322 2333
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCChhHHHHHH
Q 008454 262 NVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHC-----NKGLLSLAMKFK 321 (565)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-----~~g~~~~a~~~~ 321 (565)
.+ ...=|-.|.+.+....+.++-.......-.-+...|.+++..|. -.|.+++|+++.
T Consensus 119 kI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 119 KI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 33 33334446677777777777777665432233444655554444 357777777665
No 357
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.06 E-value=1.7e+02 Score=32.53 Aligned_cols=40 Identities=5% Similarity=0.017 Sum_probs=25.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 306 SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK 345 (565)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 345 (565)
-.|+.....+-+..+++.+....-..+..-.+.++..|+.
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 3456667777777777777765444566666666666654
No 358
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.85 E-value=61 Score=30.11 Aligned_cols=88 Identities=10% Similarity=-0.001 Sum_probs=44.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 008454 304 LISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQ--- 380 (565)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--- 380 (565)
=|.+++..+++.+++...-+.-+.--+.-......-|-.|.+.+.+..+.++-..-...--.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 35666666666666654443332211112333444455566666666666666655543212223335555555443
Q ss_pred --cCChHHHHHHH
Q 008454 381 --VGNSEMGASLY 391 (565)
Q Consensus 381 --~g~~~~A~~~~ 391 (565)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 46666666555
No 359
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=71.78 E-value=94 Score=29.59 Aligned_cols=92 Identities=11% Similarity=0.098 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCH----HHH
Q 008454 441 YSALITGQCVRKNSERAFQLYKSMIR----SGCRPNKHIFEMLMST-FCQNEDFDRAAEVLLEMLEKCMAPDS----IIL 511 (565)
Q Consensus 441 ~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~ 511 (565)
+-....-||+.|+.+.|++.++...+ .|.+.|...+.+-+.. |....-..+-++..+.+.+.|...+. .+|
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY 186 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVY 186 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHH
Confidence 34444556666666666655544433 3445555444333322 22222233344444444555443332 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 008454 512 SELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 512 ~~li~~~~~~g~~~~A~~~~~~m 534 (565)
..+ -+....++.+|..+|-+.
T Consensus 187 ~Gl--y~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 187 QGL--YCMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHH--HHHHHHhHHHHHHHHHHH
Confidence 333 122334566666655544
No 360
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.08 E-value=7.2 Score=22.18 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=17.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
.+..++.+.|++++|.+.|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556666777777777777777654
No 361
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=70.90 E-value=1e+02 Score=29.72 Aligned_cols=65 Identities=9% Similarity=-0.094 Sum_probs=41.5
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc---CCChHHHHHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD---SERVDIALGFYKEM 254 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~A~~~~~~m 254 (565)
.+.+....-.+++.+.+..+.++..+.++++...... +...|...+..... .-.++....+|.+.
T Consensus 61 np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 61 NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 3456666777777777777777778888888776533 56667666665544 22355555555554
No 362
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.79 E-value=16 Score=23.56 Aligned_cols=33 Identities=9% Similarity=-0.012 Sum_probs=22.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHh
Q 008454 519 HHCGKDELAMKLFRKMEIRGLLPKGFDKLRTIN 551 (565)
Q Consensus 519 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 551 (565)
.+.|-.+++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445666677777777777777777766666654
No 363
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.74 E-value=10 Score=21.52 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=5.8
Q ss_pred hcCCHHHHHHHHHHH
Q 008454 485 QNEDFDRAAEVLLEM 499 (565)
Q Consensus 485 ~~g~~~~A~~~~~~~ 499 (565)
+.|++++|.+.|+++
T Consensus 12 ~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 12 KLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHH
Confidence 333333333333333
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.24 E-value=17 Score=26.29 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=22.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 008454 485 QNEDFDRAAEVLLEMLEKCMAPDS--IILSELYSGLHHCGKDELAMKL 530 (565)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~ 530 (565)
...+.++|+..|+..++.-..+.. .++..|+.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666555554222211 2445555566666665555443
No 365
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=68.84 E-value=35 Score=32.49 Aligned_cols=94 Identities=14% Similarity=0.027 Sum_probs=57.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008454 375 INGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNS 454 (565)
Q Consensus 375 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 454 (565)
..-|.+.|.+++|++.|........ .+.+++..-..+|.+..++..|..=-......+-. -...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhH
Confidence 5678899999999999998776522 27888888889999999988776655555432100 111233333333333444
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 008454 455 ERAFQLYKSMIRSGCRPN 472 (565)
Q Consensus 455 ~~A~~~~~~m~~~~~~p~ 472 (565)
.+|.+=++..++. .|+
T Consensus 182 ~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHhHHHHHhh--Ccc
Confidence 4444444444443 555
No 366
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.60 E-value=1e+02 Score=28.85 Aligned_cols=62 Identities=5% Similarity=0.035 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008454 330 QPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT-NVSPNVVTYNTLINGYGQVGNSEMGASLY 391 (565)
Q Consensus 330 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (565)
.++..+...+++.+++.++|.+-.+.++..... +..-|...|..+|+.....|+..-...+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 344555555555666666666555555554433 33445555555555555555554444433
No 367
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.46 E-value=39 Score=27.05 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 422 AAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 422 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
..+-+..+...++.|+.......+++|.+.+++..|.++|+-...+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444455555566666666666666666666776666666666554
No 368
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.97 E-value=53 Score=25.17 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=5.5
Q ss_pred HHcCCHHHHHHHH
Q 008454 414 CKEGKTKKAAYLV 426 (565)
Q Consensus 414 ~~~g~~~~A~~~~ 426 (565)
.+.|++++|..+.
T Consensus 50 mNrG~Yq~Al~l~ 62 (115)
T TIGR02508 50 MNRGDYQSALQLG 62 (115)
T ss_pred HccchHHHHHHhc
Confidence 3444444444433
No 369
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.87 E-value=1.4e+02 Score=29.53 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGF--LPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
..+.-+...|..+|+++.|++.|-+.+++-- +.....|-.+|..-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4567788888889999999999888666421 12345566667777777777777666666554
No 370
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=65.14 E-value=1.9e+02 Score=30.60 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhh
Q 008454 520 HCGKDELAMKLFRKMEIRGLLPKGFDKLRTINC 552 (565)
Q Consensus 520 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 552 (565)
+.|++.+|.+.+-.+.+.++.|..+-..-+..+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 458888888888888888888877655544443
No 371
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=64.32 E-value=85 Score=27.13 Aligned_cols=27 Identities=15% Similarity=0.426 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 455 ERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 455 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
++|.+.|+.+.+. .|+..+|+.-+...
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 3444444444443 45555555554443
No 372
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.01 E-value=2.6e+02 Score=31.79 Aligned_cols=126 Identities=14% Similarity=0.023 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 263 VYTLNMVMHAFCKLGIIERAVEVFKNMESM-GF-IPS-VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTL 339 (565)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 339 (565)
.+.|..+++.+-+.+..+.+.++-...++. +. .|+ ..+++.+.......|.+-+|...+-.-... .........+
T Consensus 983 lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRql 1060 (1480)
T KOG4521|consen 983 LHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHH
Confidence 345777788888888888888777666554 11 122 345666777777777777776554332111 1112345556
Q ss_pred HHHHHHcCCHH------------HHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008454 340 IFGFCKKGKLH------------EANR-IFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASL 390 (565)
Q Consensus 340 i~~~~~~g~~~------------~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 390 (565)
+-.++..|.++ +... +++..-+.........|..|-..+...+++.+|-.+
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 66667666654 3333 222222222122233455555555667777766543
No 373
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.81 E-value=1.3e+02 Score=28.14 Aligned_cols=50 Identities=20% Similarity=0.118 Sum_probs=29.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHhcCChhHHHH
Q 008454 270 MHAFCKLGIIERAVEVFKNMESMGFIPSVTTY-------NTLISGHCNKGLLSLAMK 319 (565)
Q Consensus 270 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~g~~~~a~~ 319 (565)
.+-..+.+++++|+..+.++...|+..+..+. ..+...|...|++....+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 34455667777777777777777766554433 334455555555544443
No 374
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.55 E-value=1.5e+02 Score=28.70 Aligned_cols=100 Identities=12% Similarity=0.023 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 365 SPNVVTYNTLINGYGQVGN------------SEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~------------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
+-|..+|-.++..--..-. .+.-+.++++..+.+. -+......++..+.+..+.++..+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567777776654332211 2344556666666633 35566666666666666666667777776665
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 008454 433 SLVPNASTYSALITGQCV---RKNSERAFQLYKSMIR 466 (565)
Q Consensus 433 ~~~p~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~ 466 (565)
... +...|...+..... .-.++....+|.+.++
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 332 45555555554433 2345566666655544
No 375
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=63.06 E-value=1.3e+02 Score=28.52 Aligned_cols=51 Identities=10% Similarity=0.149 Sum_probs=23.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 234 FLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNME 290 (565)
Q Consensus 234 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (565)
++....+.++....++.+..+. ....-...+..+...|++..|++++.+..
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3344444444444444444443 22233344444555566666666555544
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.30 E-value=28 Score=25.29 Aligned_cols=47 Identities=6% Similarity=0.164 Sum_probs=32.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 450 VRKNSERAFQLYKSMIRSGCRPN--KHIFEMLMSTFCQNEDFDRAAEVL 496 (565)
Q Consensus 450 ~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 496 (565)
..++-++|+..|...++.-..+. -.++..++.+++..|++++++.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788888888877633322 145667777888888888777654
No 377
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=60.75 E-value=1.5e+02 Score=27.94 Aligned_cols=150 Identities=11% Similarity=0.029 Sum_probs=77.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 008454 205 HRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD----SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK----L 276 (565)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~ 276 (565)
..+++..+...+......+ +......+...|.. ..+..+|.++|..+.+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 3456777777777776643 22444444444443 2446778888887666553 2233334444433 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q 008454 277 GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG-------LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK---- 345 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---- 345 (565)
.+..+|...|++..+.|..+...+...+...|...+ +...|...+.+....+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 367777777777777765433222333333333321 2225666666665554 33333333333322
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 008454 346 KGKLHEANRIFSEMKATN 363 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~~ 363 (565)
..+.++|...|...-+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 235566666666666655
No 378
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.13 E-value=76 Score=24.34 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=21.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008454 308 HCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN 363 (565)
Q Consensus 308 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 363 (565)
+.+.|++++|..+.+.+ ..||...|.+|.. .+.|..+++..-+.+|..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 44445555554444433 1344444443332 23344444444444444443
No 379
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.61 E-value=18 Score=19.51 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRD 221 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 221 (565)
+|..+...+...|++++|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345556666666777777766666554
No 380
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.60 E-value=1.5e+02 Score=27.65 Aligned_cols=199 Identities=12% Similarity=0.083 Sum_probs=109.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHH-------HHHHHHHHHHcCCChHHHHHHHHHHH----HCCCCCCHHHHH
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPIIE-------SCNKFLSSLLDSERVDIALGFYKEMR----RNRISPNVYTLN 267 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~ll~~~~~~~~~~~A~~~~~~m~----~~~~~p~~~~~~ 267 (565)
+.+-..+.+++++|+..+.++...|+..+.. +...+...|...|+...--+...... ...-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4556677789999999999999998876544 34557778888887665444433321 111111233344
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHH----HHHHCCCCCCHHHHH
Q 008454 268 MVMHAFCKL-GIIERAVEVFKNMESMGFIPS-----VTTYNTLISGHCNKGLLSLAMKFKN----LMEKNGIQPNVITFN 337 (565)
Q Consensus 268 ~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~----~m~~~g~~~~~~~~~ 337 (565)
.++..+-.. ..++..+.+.....+...+-+ ...=..++..+.+.|.+.+|+.+.. ++.+..-+++..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 444444332 334555555544433211111 1112347788889999999987554 445555566655544
Q ss_pred HHH-HHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHC
Q 008454 338 TLI-FGFCKKGKLHEANRIFSEMKAT----NVSPNVVTYNTLING--YGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 338 ~li-~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~ 397 (565)
.+= .+|...++..++..-+...+-. -++|-...---++.+ .|...++..|..+|-+..+.
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 443 4555555655555544443321 123333333333333 24455677777777666553
No 381
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.34 E-value=83 Score=25.30 Aligned_cols=59 Identities=12% Similarity=0.185 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 456 RAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELY 515 (565)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 515 (565)
+..+-+.......+.|+..+...-+.+|.+.+|+..|.++|+-+..+ +.+...+|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 34445555556667888888888888888888888888888777655 222223455443
No 382
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.34 E-value=54 Score=28.79 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 505 APDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 505 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
.|+..+|..++.++...|+.++|.++.+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555555553
No 383
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.13 E-value=1.7e+02 Score=27.42 Aligned_cols=97 Identities=9% Similarity=0.114 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEK----NGIQPNVITFNTLI-FGFCKKGKLHEANRIFSEMKATNVSPNVVT-- 370 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-- 370 (565)
...+..+..-|++.++.+.+.+...+..+ .|.+.|+....+-+ -.|....-.++-++..+.|.+.|...+...
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 45566677777777777777766555433 34444433222222 222233335566666667777665443322
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 371 --YNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 371 --~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
|.-+- +....++.+|-.++.+...
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 22111 1223455666666555543
No 384
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.09 E-value=1.4e+02 Score=26.30 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=50.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYS-----ALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
...+...|++++|...++..... |....+. .|.+.....|.+++|+.+++...+.++ .......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 44455666666666666665542 2222222 233455566777777777766655432 2233444455666
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 008454 485 QNEDFDRAAEVLLEMLEKC 503 (565)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~ 503 (565)
..|+-++|..-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777776654
No 385
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=55.98 E-value=2.9e+02 Score=29.65 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDS 241 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 241 (565)
-.+|-.|.++|++++|.++....... .......+-..+..+...
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 35677788888888888888555442 223445556666777664
No 386
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.91 E-value=1.2e+02 Score=25.23 Aligned_cols=46 Identities=13% Similarity=0.269 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 369 VTYNTLINGYGQVGN-SEMGASLYEEMLRNGIKVDILTYNALILGLC 414 (565)
Q Consensus 369 ~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 414 (565)
..|..++.+..+..- --.+..+|+.|.+.+..++..-|..++.++.
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 334444444433332 2233444444444444444444444444433
No 387
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.30 E-value=1.8e+02 Score=27.22 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 008454 330 QPNVITFNTLIFGFCKKGKLHEANRIFSEMKA----TNVSPNVVTYNT-LINGYGQVGNSEMGASLYEEMLRNGIKVDIL 404 (565)
Q Consensus 330 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 404 (565)
.--..++..+.+.|++.++.+.+.++..+... .|.+.|+..... +.-.|....-.++.++..+.|.++|...+..
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 33467788899999999999999988877654 355666533222 2223444445678888889999998766543
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 405 ----TYNALILGLCKEGKTKKAAYLVKDLDK 431 (565)
Q Consensus 405 ----~~~~li~~~~~~g~~~~A~~~~~~~~~ 431 (565)
+|..+- +....++.+|-.++-+...
T Consensus 192 NRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 192 NRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 333222 2234567788777776654
No 388
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.65 E-value=1.7e+02 Score=26.61 Aligned_cols=245 Identities=8% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH----HHCCC
Q 008454 149 ILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM----RDYGF 224 (565)
Q Consensus 149 ~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~ 224 (565)
.++-.+++++|.+++.+....-..... +......|-.....+.+.|.-++|-..|-.+ ++.++
T Consensus 23 lfgg~~k~eeAadl~~~Aan~yklaK~-------------w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~ 89 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANMYKLAKN-------------WSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDP 89 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccCh
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 225 LPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTL 304 (565)
Q Consensus 225 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 304 (565)
.--+.....-+..|...|++..|-....++-+. ...+..-+...|..|-..+++-...+.-...-+. +.-+
T Consensus 90 ~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC--------~lKv 160 (288)
T KOG1586|consen 90 EEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESVSSANKC--------LLKV 160 (288)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHH--------HHHH
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008454 305 ISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTL------IFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGY 378 (565)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 378 (565)
.......+++.+|.++|+++....+.-+.--|..- .-++.-..+.-.+...+++..+........-=..++.-+
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L 240 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDL 240 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 379 GQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCK 415 (565)
Q Consensus 379 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (565)
...-+-+....+-+...+-+-......|..-|..-.+
T Consensus 241 ~~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK 277 (288)
T KOG1586|consen 241 LDAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIK 277 (288)
T ss_pred HHHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHH
No 389
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=54.42 E-value=78 Score=29.82 Aligned_cols=57 Identities=11% Similarity=0.336 Sum_probs=31.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 249 GFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCN 310 (565)
Q Consensus 249 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 310 (565)
++|+.|.+.++.|.-+++..+.-.+.+.=.+.+++.+++.+.. |..-|..|+..||.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 4555555566666666665555555555566666666666654 33335555555543
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.36 E-value=39 Score=29.69 Aligned_cols=54 Identities=7% Similarity=-0.025 Sum_probs=45.7
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDS 169 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~ 169 (565)
...+......+.+|+.+--...|++..|..++.++...|+.++|..+.+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344667777778888777667789999999999999999999999999988876
No 391
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=53.22 E-value=2.6e+02 Score=28.32 Aligned_cols=116 Identities=9% Similarity=0.049 Sum_probs=72.5
Q ss_pred CChHHH-HHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHH
Q 008454 118 KDYVLS-LEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVF 196 (565)
Q Consensus 118 ~~~~~a-l~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (565)
+|...| .++|.-+..+++ ++........+....|.++.+...+...-.. ......+.
T Consensus 303 gd~~aas~~~~~~lr~~~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-------------------~~s~~~~~ 360 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-------------------IGTTDSTL 360 (831)
T ss_pred cCHHHHHHHHHHHHHhCCC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-------------------hcCCchHH
Confidence 344444 455555444433 3333444555667778888888877654433 22344566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
..+++...+.|+++.|..+-+-|....+. +.+.........-..|-++++...|+++..
T Consensus 361 ~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 361 RCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 77888888888999999888888877665 555444444444455667777777777654
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.87 E-value=2.1e+02 Score=28.43 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=24.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHh
Q 008454 308 HCNKGLLSLAMKFKNLMEKNGIQPNVI--TFNTLIFGFC--KKGKLHEANRIFSEMKA 361 (565)
Q Consensus 308 ~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~ 361 (565)
+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33555666666666655554 333332 2222333332 23345555555555443
No 393
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.72 E-value=1e+02 Score=31.85 Aligned_cols=103 Identities=15% Similarity=0.004 Sum_probs=55.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 205 HRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVE 284 (565)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 284 (565)
..|+...|...+.........-..+..-.|...+.+.|-..+|-.++.+..... ....-++..+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 346666666655554433222222333445555555566666666666655443 2344555666666666677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH
Q 008454 285 VFKNMESMGFIPSVTTYNTLISGHC 309 (565)
Q Consensus 285 ~~~~m~~~g~~p~~~~~~~li~~~~ 309 (565)
.|++..+.... +.+.-+.|....|
T Consensus 698 ~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 77666655322 3444444444433
No 394
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.30 E-value=3.7e+02 Score=29.60 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=38.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 201 KTYAHRKKFRNATDTFCQMRDYGFLPI--IESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
+.|...|++++|++.-+.- |+ ..++..-...|.+.+++..|-++|.++.+ .|..+.--+....+
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~ 431 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQ 431 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCC
Confidence 4566778888887764432 22 12334445666777888888888877632 34444444445555
Q ss_pred HH
Q 008454 279 IE 280 (565)
Q Consensus 279 ~~ 280 (565)
.+
T Consensus 432 ~~ 433 (911)
T KOG2034|consen 432 ER 433 (911)
T ss_pred HH
Confidence 44
No 395
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=51.29 E-value=1.7e+02 Score=27.70 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=24.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008454 270 MHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEK 326 (565)
Q Consensus 270 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 326 (565)
+....+.++..+..+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333444444444444444443 233333445555566666666666655543
No 396
>PRK11619 lytic murein transglycosylase; Provisional
Probab=51.18 E-value=3.5e+02 Score=29.21 Aligned_cols=330 Identities=7% Similarity=-0.019 Sum_probs=178.5
Q ss_pred cccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH
Q 008454 186 YRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYT 265 (565)
Q Consensus 186 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 265 (565)
|+..+.....-...+..+.+.+++...++.+.. .+.+...-.....+....|+.++|....+.+=..|. .....
T Consensus 92 ~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~ 165 (644)
T PRK11619 92 NPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNA 165 (644)
T ss_pred CCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChH
Confidence 343444455555666777788888887773322 124666667778888889998888777777654442 35667
Q ss_pred HHHHHHHHHHcCCHHHH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH---------CCCCCCHH
Q 008454 266 LNMVMHAFCKLGIIERA--VEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEK---------NGIQPNVI 334 (565)
Q Consensus 266 ~~~li~~~~~~g~~~~a--~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---------~g~~~~~~ 334 (565)
++.++..+.+.|.+... .+-++.+...| +...-..+...+. .......+.+..+.. ..+.++..
T Consensus 166 cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~ 240 (644)
T PRK11619 166 CDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDF 240 (644)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChh
Confidence 88888888877755433 22233333332 2222222222110 000100111111111 01122321
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 335 TFNTLIFGFC--KKGKLHEANRIFSEMKATN-VSPNV--VTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNAL 409 (565)
Q Consensus 335 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~~-~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 409 (565)
.-..++.++. ...+.+.|..++....... ..+.. ..+..+.......+...++...++...... .+......-
T Consensus 241 ~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r 318 (644)
T PRK11619 241 TRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERR 318 (644)
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHH
Confidence 1221222222 3456788999998875443 22221 223334333333332566777776654332 244445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------CCC-------
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS------------GCR------- 470 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------------~~~------- 470 (565)
+..-...++++.+...+..|....-. ...-.--+.+++...|+.++|...|+.+... |.+
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~ 397 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDK 397 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCC
Confidence 66666899999998888887543222 3334555677777789999999999887532 211
Q ss_pred -CCH-HHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008454 471 -PNK-HIF-----EMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFR 532 (565)
Q Consensus 471 -p~~-~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 532 (565)
|.. ..+ ..-+..+...|+...|...|..+.+. .+......+.....+.|..+.+.....
T Consensus 398 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 398 APKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred CCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 000 000 11233456678888888888887764 234444555555556676666655443
No 397
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=51.01 E-value=91 Score=32.74 Aligned_cols=73 Identities=14% Similarity=0.248 Sum_probs=50.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHcCCChHH------HHHHHHHHHHCCCCCCHHHHHHH
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDY--GFLPIIESCNKFLSSLLDSERVDI------ALGFYKEMRRNRISPNVYTLNMV 269 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~------A~~~~~~m~~~~~~p~~~~~~~l 269 (565)
+|+.+|..+|++..+.++++..... |-+.-...+|..++...+.|.++. |.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888999999999999999888764 223346778888888888887653 334444433 34477777777
Q ss_pred HHHH
Q 008454 270 MHAF 273 (565)
Q Consensus 270 i~~~ 273 (565)
+.+-
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 6653
No 398
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.84 E-value=1.1e+02 Score=26.52 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhcCCCCCC-HHHH-----HHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHH
Q 008454 121 VLSLEFFTWVQTHKPSSLT-LETH-----SIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSIL 183 (565)
Q Consensus 121 ~~al~~f~~~~~~~~~~~~-~~~~-----~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~ 183 (565)
+.|+.+++.+.+..+.+.+ .+.- ...+.+|.++|.|++|.++|+++.........+.-+..++
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II 154 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 5688888877775543211 1111 2245678899999999999999988654333333333333
No 399
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=50.64 E-value=3.1e+02 Score=28.47 Aligned_cols=101 Identities=9% Similarity=0.063 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHH
Q 008454 119 DYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDL 198 (565)
Q Consensus 119 ~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (565)
+...-..+++.+..+.+...+.+++..+++. ..|...++..+++++...|.-.........++.. .+......
T Consensus 179 ~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~-----~~~~~~~~ 251 (515)
T COG2812 179 DLEEIAKHLAAILDKEGINIEEDALSLIARA--AEGSLRDALSLLDQAIAFGEGEITLESVRDMLGL-----TDIEKLLS 251 (515)
T ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHHH--cCCChhhHHHHHHHHHHccCCcccHHHHHHHhCC-----CCHHHHHH
Confidence 4556677788888888888888887776654 6789999999999999886422222222222211 11122222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPI 227 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 227 (565)
++.+ ...||..+++..++++.+.|..|.
T Consensus 252 ~~~~-i~~~d~~~~~~~~~~l~~~G~~~~ 279 (515)
T COG2812 252 LLEA-ILKGDAKEALRLINELIEEGKDPE 279 (515)
T ss_pred HHHH-HHccCHHHHHHHHHHHHHhCcCHH
Confidence 2222 234677777777777777776543
No 400
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=50.53 E-value=3.8e+02 Score=29.47 Aligned_cols=99 Identities=5% Similarity=-0.024 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHH
Q 008454 120 YVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLL 199 (565)
Q Consensus 120 ~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (565)
.....+.++++....+...+.+....++.. ..|+..+|+.++++....+.-.........++ ...+......+
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~L-----G~~d~~~i~~l 252 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGML-----GALDQTYMVRL 252 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHh-----CCCCHHHHHHH
Confidence 344455566655555566677666666554 46889999999888776543222322222222 12233345555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCc
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLP 226 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p 226 (565)
+..+. .|++.+++.+++++...|...
T Consensus 253 l~aL~-~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 253 LDALA-AGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred HHHHH-cCCHHHHHHHHHHHHHhCCCH
Confidence 66544 489999999999999888654
No 401
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.52 E-value=83 Score=26.18 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=33.7
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 216 FCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 216 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
.+.+.+.|.+++ ..-..++..+...+..-.|.++|+++.+.+...+..|....+..+...|
T Consensus 9 ~~~lk~~glr~T-~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLT-PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334455555533 2334455666666666667777777766665555555544455555444
No 402
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=50.14 E-value=2.4e+02 Score=27.03 Aligned_cols=134 Identities=16% Similarity=0.051 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCH
Q 008454 259 ISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM-GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLME----KNGIQPNV 333 (565)
Q Consensus 259 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~~~~ 333 (565)
+..|...++.|... ...++++-.+..++..+. |-.--...+.....-||+.|+.+.|++.+.+.. ..|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34455555554433 222334444444444433 211123445556677888888888887766544 34566666
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 334 ITFNTLIFGFC-KKGKLHEANRIFSEMKATNVSPNVV----TYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 334 ~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
..+..-+..+. ...-..+-++..+.+.+.|...+.. +|..+ .+....++.+|-.+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 65554443332 2222344555555556666554432 22222 12334567777777766654
No 403
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.82 E-value=87 Score=25.28 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=45.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHH
Q 008454 107 FRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGI 166 (565)
Q Consensus 107 ~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~ 166 (565)
.....+.....+-...+.++|+.+..+.-......-|...+..+...|++++|.++++.-
T Consensus 66 ~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 66 ERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 344444544444445888999999887766667888999999999999999999998753
No 404
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=49.34 E-value=87 Score=32.37 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=59.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008454 380 QVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQ 459 (565)
Q Consensus 380 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 459 (565)
..|+...|...+.........-..+..-.|.+.+.+.|....|-.++.+..... ...+.++-.+.+++....+.+.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 346666666666555543222222333445555666666677777777666544 2355567777777878888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH
Q 008454 460 LYKSMIRSGCRPNKHIFEMLMS 481 (565)
Q Consensus 460 ~~~~m~~~~~~p~~~~~~~li~ 481 (565)
.|+++++.. +.+...-+.|..
T Consensus 698 ~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 698 AFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred HHHHHHhcC-CCChhhHHHHHH
Confidence 888877763 333444444433
No 405
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=49.25 E-value=1.1e+02 Score=28.93 Aligned_cols=58 Identities=5% Similarity=0.139 Sum_probs=49.0
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 213 TDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 213 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
.++++.+.+.++.|.-.++..+.-.+.+.=.+.+++.+|+.+.. |..-|..++..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 56788899999999999999998899999899999999999975 44447778877775
No 406
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.04 E-value=4e+02 Score=29.35 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 302 NTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEM 359 (565)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 359 (565)
.+....+...|+.++...+-..|.+ |..++.-+++.+.+++|++++..-
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455566776666665555443 455677778888888888877543
No 407
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.76 E-value=53 Score=22.57 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=8.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 008454 339 LIFGFCKKGKLHEANRIFSEM 359 (565)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~m 359 (565)
+|.+|...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.75 E-value=82 Score=23.73 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=36.2
Q ss_pred HhhcCChHHH----HHHHHHHhhcCCCC---CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 008454 114 LKVQKDYVLS----LEFFTWVQTHKPSS---LTLETHSIVLHILTKNRKFKSSESILRGILDS 169 (565)
Q Consensus 114 ~~~~~~~~~a----l~~f~~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~ 169 (565)
....+|+..| .++|+......... .-....-.++......|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445678777 46666665544322 11233344566667889999999999988875
No 409
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=48.43 E-value=2e+02 Score=25.76 Aligned_cols=95 Identities=19% Similarity=0.121 Sum_probs=52.1
Q ss_pred HHhcCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHcCCCC----C-HH
Q 008454 448 QCVRKNSERAFQLYKSMIR----SGCRPN--KHIFEMLMSTFCQNEDF-------DRAAEVLLEMLEKCMAP----D-SI 509 (565)
Q Consensus 448 ~~~~~~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~-------~~A~~~~~~~~~~~~~p----~-~~ 509 (565)
+.....+++|++.|.-++- .+.++. ...+-.+...|...|+- ..|.+.|.+..+..-.| + ..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3444556666665554442 122333 23344455556666663 34555555555442221 2 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008454 510 ILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK 542 (565)
Q Consensus 510 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 542 (565)
+.-.+.....+.|+.++|.+.|.++...+-...
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 333455667788999999999999887754433
No 410
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.22 E-value=3.7e+02 Score=28.73 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=46.8
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHH
Q 008454 125 EFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYA 204 (565)
Q Consensus 125 ~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 204 (565)
+.+.......+...+.+....++.. ..|+...+..+++++...|.-.........++. ..+......++.++.
T Consensus 190 ~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg-----~~~~~~i~~LldaL~ 262 (618)
T PRK14951 190 EHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLG-----SVDRSHVFRLIDALA 262 (618)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 3333333344555566666555542 457777777777665544432233333333331 122233333444444
Q ss_pred hcCChHHHHHHHHHHHHCCCC
Q 008454 205 HRKKFRNATDTFCQMRDYGFL 225 (565)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~ 225 (565)
. |+...++++++.+.+.|..
T Consensus 263 ~-~d~~~al~~l~~l~~~G~~ 282 (618)
T PRK14951 263 Q-GDGRTVVETADELRLNGLS 282 (618)
T ss_pred c-CCHHHHHHHHHHHHHcCCC
Confidence 3 5666666666666666644
No 411
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.87 E-value=52 Score=22.59 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=11.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 008454 373 TLINGYGQVGNSEMGASLYEEML 395 (565)
Q Consensus 373 ~li~~~~~~g~~~~A~~~~~~m~ 395 (565)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555444
No 412
>PRK09857 putative transposase; Provisional
Probab=47.50 E-value=1.5e+02 Score=28.19 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008454 477 EMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK 542 (565)
Q Consensus 477 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 542 (565)
..++.-..+.++.++..++++.+.+. .........++..-+.+.|.-+++.++.++|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33443334455555555555555443 222233344555666666666777788888888877655
No 413
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.17 E-value=76 Score=20.43 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=12.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008454 276 LGIIERAVEVFKNMESMGFIPSVTTYNT 303 (565)
Q Consensus 276 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 303 (565)
.|-..++..++++|.+.|+..+...|..
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 3444444444444444444444444433
No 414
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.76 E-value=1.3e+02 Score=24.96 Aligned_cols=48 Identities=8% Similarity=0.011 Sum_probs=22.1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 008454 287 KNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVIT 335 (565)
Q Consensus 287 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 335 (565)
..+.+.|++++.. -..++..+...++.-.|.++++++.+.+...+..|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 3344445443332 22344444444444555555555555544444333
No 415
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.59 E-value=5e+02 Score=29.75 Aligned_cols=128 Identities=13% Similarity=0.040 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ--PN-VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTL 374 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 374 (565)
...|..+++.+-+.+..+.+.++-...++.-.. |+ ..+++.+.+-....|.+-+|.+.+-.-... ..-......+
T Consensus 983 lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRql 1060 (1480)
T KOG4521|consen 983 LHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHH
Confidence 345777888888999999999988777654211 22 345677778888888888887765432111 1112334556
Q ss_pred HHHHHhcCChHH------------HHH-HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 375 INGYGQVGNSEM------------GAS-LYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVK 427 (565)
Q Consensus 375 i~~~~~~g~~~~------------A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 427 (565)
+..++..|.++. ... +++...+.........|+.|-..+...+++.+|-.++-
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 666666666543 333 33333333222233445555555677888887765544
No 416
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.30 E-value=54 Score=30.87 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 266 LNMVMHAFCKLGIIERAVEVFKNMESMGFI 295 (565)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 295 (565)
|+..|....+.||+++|++++++.++.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345556666666666666666666655544
No 417
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.26 E-value=41 Score=31.59 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=23.4
Q ss_pred CCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 008454 296 PSVTT-YNTLISGHCNKGLLSLAMKFKNLMEKNGIQ 330 (565)
Q Consensus 296 p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 330 (565)
|+..+ |+..|....+.|++++|+.++++.++.|..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34333 456777777777777777777777777754
No 418
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.78 E-value=3.3e+02 Score=27.41 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhh
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILD 168 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~ 168 (565)
.+.+....++... .|+...+..+++.+..
T Consensus 174 i~~~al~~l~~~s--~Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 174 LDDEALDALARLA--NGDARRALNLLELAAL 202 (413)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 4444444444432 5666666666665543
No 419
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=45.76 E-value=4.3e+02 Score=28.70 Aligned_cols=98 Identities=6% Similarity=-0.048 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHH
Q 008454 121 VLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLF 200 (565)
Q Consensus 121 ~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 200 (565)
....+...+.....+...+......++... .|+...+..+++++...|.-.........++. ..+......|+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG-----~~d~~~If~Ll 253 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIG-----AVDKQYLYELL 253 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHc-----ccCHHHHHHHH
Confidence 334444455555556666777776666553 58888888888887765422223333333332 11333444555
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCc
Q 008454 201 KTYAHRKKFRNATDTFCQMRDYGFLP 226 (565)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~p 226 (565)
.++.. ++...++.+++.+...|..+
T Consensus 254 dAL~~-~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 254 TGIIN-QDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred HHHHc-CCHHHHHHHHHHHHHhCCCH
Confidence 55554 78888888888888887653
No 420
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.59 E-value=3.6e+02 Score=27.76 Aligned_cols=39 Identities=5% Similarity=-0.066 Sum_probs=19.6
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008454 127 FTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGIL 167 (565)
Q Consensus 127 f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~ 167 (565)
.+.+....+...+.++...++.. ..|+...|+.+++.+.
T Consensus 189 L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 189 SEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHH
Confidence 33333333444455555444432 3466666666666554
No 421
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=44.98 E-value=1.3e+02 Score=22.45 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=29.6
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 213 TDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIE 280 (565)
Q Consensus 213 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 280 (565)
.++++.+.+.|+- +......+-.+--..|+.+.|.+++..+. +| ...|...+.++...|.-+
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3455555555543 33333333333334455666666666655 32 124455555555555433
No 422
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=44.21 E-value=1.2e+02 Score=23.68 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=9.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 008454 409 LILGLCKEGKTKKAAYLVKDL 429 (565)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~ 429 (565)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444444555555555555443
No 423
>PRK10941 hypothetical protein; Provisional
Probab=43.31 E-value=2.8e+02 Score=25.93 Aligned_cols=60 Identities=10% Similarity=0.179 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 232 NKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 232 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
+.+-.+|.+.++++.|+...+.+.... +.+..-+.--.-.|.+.|.+..|..-++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344455566666666666666665543 123333444444455666666666666655443
No 424
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.02 E-value=1.3e+02 Score=27.72 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 478 MLMSTFCQNEDFDRAAEVLLEMLEK----CM-APDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
.+..-|.+.|++++|.++|+.+... |. .+...+...+..++.+.|+.++...+.=+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455566667777777776666321 21 223345555666666667766666554444
No 425
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.72 E-value=1.6e+02 Score=22.99 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 476 FEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 476 ~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
|..|+..|...|..++|.++|.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55556666666666666666665554
No 426
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=41.98 E-value=2.8e+02 Score=31.40 Aligned_cols=196 Identities=10% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHH-HHCCCCcC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH-----
Q 008454 198 LLFKTYAHRKKFRNATDTFCQM-RDYGFLPI---IESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNM----- 268 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~-~~~~~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~----- 268 (565)
..++.+...++|.+|..+.++- ...++--| ....+.+-...-+-++.+.--.++..+.+..+.-..+.-..
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~~~~~~~ 778 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDTYPPSSE 778 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccccccccc
Q ss_pred -----HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 269 -----VMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG--LLSLAMKFKNLMEKNGIQPNVITFNTLIF 341 (565)
Q Consensus 269 -----li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 341 (565)
-.......+++...-+.+.+..+. ..-.......++.+|++.+ ++++|+....++.+.+...-..+..-++-
T Consensus 779 ~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~f 857 (928)
T PF04762_consen 779 AQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCF 857 (928)
T ss_pred cccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHhee
Q ss_pred HHHHcCCHHHHHHHHH----HHHhCCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHHH
Q 008454 342 GFCKKGKLHEANRIFS----EMKATNVSPNVVTYNTLINGY-------------GQVGNSEMGASLYEEM 394 (565)
Q Consensus 342 ~~~~~g~~~~A~~~~~----~m~~~~~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~m 394 (565)
.---..-|+.|+.+|+ .|....-..|+.-|--.++.+ ...+++++|++.+.++
T Consensus 858 LvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 858 LVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred eccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 427
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.96 E-value=1.5e+02 Score=22.31 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=10.4
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 008454 517 GLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 517 ~~~~~g~~~~A~~~~~~m~ 535 (565)
.....|++++|.+.+++..
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3444566666665555544
No 428
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=41.93 E-value=2.6e+02 Score=25.20 Aligned_cols=102 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008454 432 NSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC-RPNKHIFE--MLMSTFCQNEDFDRAAEVLLEMLEKCMAPDS 508 (565)
Q Consensus 432 ~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (565)
..+.+...-+|.|+--|.-...+.+|.+.|..-..-.. ..|..+++ .-|......|+.++|++....+...-+.-|.
T Consensus 20 ~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 20 MKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred hccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Q ss_pred HHHHHHHHH----HHhcCCHHHHHHHHHH
Q 008454 509 IILSELYSG----LHHCGKDELAMKLFRK 533 (565)
Q Consensus 509 ~~~~~li~~----~~~~g~~~~A~~~~~~ 533 (565)
..+-.|... +.+.|..++|++..+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 429
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.46 E-value=3.7e+02 Score=26.72 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGI--QPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT 362 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 362 (565)
...+.-+...|...|+++.|++.+.+..+.-. +-.+..|-.+|..-.-.|+|..+..+..+....
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 34567788888889999999998888655321 112344555666666678888888887777653
No 430
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=41.40 E-value=1.8e+02 Score=23.69 Aligned_cols=32 Identities=16% Similarity=0.000 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL 225 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 225 (565)
.++..++-.+...|+++.|+++.+.+.+.|..
T Consensus 49 ~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 49 DVLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred chHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 45666777888889999999999999988865
No 431
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=41.29 E-value=4.3e+02 Score=27.48 Aligned_cols=43 Identities=12% Similarity=0.209 Sum_probs=22.1
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhh
Q 008454 124 LEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILD 168 (565)
Q Consensus 124 l~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~ 168 (565)
.+.++...+..+...+.++...++.. ..|++..|..+++++..
T Consensus 193 ~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 193 FKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 33333333444444555555554442 34666666666666543
No 432
>PRK09857 putative transposase; Provisional
Probab=41.07 E-value=2.8e+02 Score=26.38 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 008454 268 MVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGI 329 (565)
Q Consensus 268 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 329 (565)
.++....+.++.++..++++.+.+. .........++..-+.+.|..+++.++..+|...|+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333333444444444444444333 111222222333333333433344444444444443
No 433
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.88 E-value=4.6e+02 Score=27.35 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=19.6
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 008454 130 VQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDS 169 (565)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~ 169 (565)
..+..+...+......++.. ..|+...|..+++++...
T Consensus 190 il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~ 227 (509)
T PRK14958 190 LLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAY 227 (509)
T ss_pred HHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhc
Confidence 33333444455555444433 246666666666655544
No 434
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=39.83 E-value=1.6e+02 Score=21.99 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=4.5
Q ss_pred ChHHHHHHHHHH
Q 008454 383 NSEMGASLYEEM 394 (565)
Q Consensus 383 ~~~~A~~~~~~m 394 (565)
+.+.|.++++.+
T Consensus 51 ~~~~ar~LL~~L 62 (88)
T cd08819 51 NESGARELLKRI 62 (88)
T ss_pred cHHHHHHHHHHh
Confidence 333333333333
No 435
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.62 E-value=4e+02 Score=29.48 Aligned_cols=158 Identities=14% Similarity=0.100 Sum_probs=90.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
++|..+-+.|.++-|+...+.-. + -.......|+.+.|++.-..+ -+..+|..|.....++|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~---------t---RF~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDER---------T---RFELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcc---------h---heeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhc
Confidence 45666677777777766543221 1 113344567777777665443 26677888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 278 IIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFS 357 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 357 (565)
+.+-|+..|+.... |+.|--.|.-.|+.++-.++......+. |..+ ...++ .-.|+.++-.++++
T Consensus 687 n~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~--~~qna-lYl~dv~ervkIl~ 751 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATG--QFQNA-LYLGDVKERVKILE 751 (1202)
T ss_pred chHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHH--HHHHH-HHhccHHHHHHHHH
Confidence 88888777776653 3344444566677777666665554331 2221 11111 12467776666665
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 358 EMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 358 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
..-.. ...|.+ ...+|.-++|.++.++....
T Consensus 752 n~g~~-----~laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 752 NGGQL-----PLAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred hcCcc-----cHHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 43221 112211 13467777888888777663
No 436
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=39.13 E-value=2e+02 Score=25.78 Aligned_cols=55 Identities=7% Similarity=0.117 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCC
Q 008454 120 YVLSLEFFTWVQTHKPSSLT----LETHSIVLHILTKNRKFKSSESILRGILDSDSFDL 174 (565)
Q Consensus 120 ~~~al~~f~~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~ 174 (565)
...|++.|..+.....++.. ......+..+..+.|++++|..+|.+++..+..+.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 35788888888776654332 23444556666788999999999999999865443
No 437
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=38.95 E-value=2.7e+02 Score=24.44 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 477 EMLMSTFCQNEDFDRAAEVLLEMLEKCM--------------APDSIILSELYSGLHHCGKDELAMKLFRK 533 (565)
Q Consensus 477 ~~li~~~~~~g~~~~A~~~~~~~~~~~~--------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 533 (565)
-.++-.|-+..++.++.++++.|.+..+ .+--.+.|.....+.+.|..|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3456677788889999999988876532 23335678888999999999999999884
No 438
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.76 E-value=4.5e+02 Score=26.91 Aligned_cols=106 Identities=11% Similarity=0.022 Sum_probs=68.2
Q ss_pred HHHcCCHHHHHHHHHHHH---hCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCH----
Q 008454 413 LCKEGKTKKAAYLVKDLD---KNSLVPN-----ASTYSALITGQCVRKNSERAFQLYKSMIR-------SGCRPNK---- 473 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~---~~~~~p~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~-------~~~~p~~---- 473 (565)
+.-.|++.+|.+++...- ..|...+ ...||.|.-.+.+.|.+..+..+|..+++ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 455788899988876531 2222112 12345565556667777777777777764 3544432
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 474 -------HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHH 520 (565)
Q Consensus 474 -------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 520 (565)
.+||.- -.|...|+.-.|.+.|.+.... +.-++..|--|..+|..
T Consensus 330 s~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 334433 3566789999999999888765 56678888888888865
No 439
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.69 E-value=4.7e+02 Score=26.90 Aligned_cols=85 Identities=7% Similarity=-0.022 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHH
Q 008454 134 KPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNAT 213 (565)
Q Consensus 134 ~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 213 (565)
.+...+.++...++.. ..|+...+...++.+.....-.........++.. ........++++. +.++++.|+
T Consensus 192 egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~-----~~~~~i~~li~si-~~~d~~~Al 263 (472)
T PRK14962 192 EGIEIDREALSFIAKR--ASGGLRDALTMLEQVWKFSEGKITLETVHEALGL-----IPIEVVRDYINAI-FNGDVKRVF 263 (472)
T ss_pred cCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcC-----CCHHHHHHHHHHH-HcCCHHHHH
Confidence 3444555555555443 2466666666666554321111222222222210 1112222233332 335666666
Q ss_pred HHHHHHHHCCCCc
Q 008454 214 DTFCQMRDYGFLP 226 (565)
Q Consensus 214 ~~~~~~~~~~~~p 226 (565)
.++..|...|..|
T Consensus 264 ~~l~~ll~~Gedp 276 (472)
T PRK14962 264 TVLDDVYYSGKDY 276 (472)
T ss_pred HHHHHHHHcCCCH
Confidence 6666666555444
No 440
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.49 E-value=34 Score=27.76 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=17.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 346 KGKLHEANRIFSEMKATNVSPNVVTYNTLING 377 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 377 (565)
.|.-..|..+|+.|.+.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34455566666666666655553 5555443
No 441
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=37.49 E-value=1.3e+02 Score=20.97 Aligned_cols=46 Identities=9% Similarity=-0.001 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008454 332 NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGY 378 (565)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 378 (565)
....++.+++.+++..-.++++..+.++.+.| ..+..+|..-++.+
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~L 52 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSL 52 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 33444555555555555555555555555544 23344444333333
No 442
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.36 E-value=3.4e+02 Score=25.20 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008454 261 PNVYTLNMVMHAFCKLGIIERAVEVF 286 (565)
Q Consensus 261 p~~~~~~~li~~~~~~g~~~~a~~~~ 286 (565)
-+......+...|.+.|++.+|..-|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35566667777777777777666544
No 443
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.13 E-value=38 Score=27.46 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=22.8
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008454 206 RKKFRNATDTFCQMRDYGFLPIIESCNKFLSS 237 (565)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 237 (565)
-|.-.+|..+|++|++.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3677788999999999998776 46666654
No 444
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=37.09 E-value=4.8e+02 Score=26.78 Aligned_cols=86 Identities=8% Similarity=0.036 Sum_probs=61.6
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 008454 124 LEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTY 203 (565)
Q Consensus 124 l~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 203 (565)
..+|+.+.. .|+++...+...++.+-+.+.+.+...++.+|+.. .|.++..|-.-....
T Consensus 91 v~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~-------------------Hp~~~dLWI~aA~we 149 (568)
T KOG2396|consen 91 VFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK-------------------HPNNPDLWIYAAKWE 149 (568)
T ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-------------------CCCCchhHHhhhhhH
Confidence 344444443 36679999999999888888899999999999987 556677765555554
Q ss_pred HhcC-ChHHHHHHHHHHHHCCCCcCHHHH
Q 008454 204 AHRK-KFRNATDTFCQMRDYGFLPIIESC 231 (565)
Q Consensus 204 ~~~g-~~~~A~~~~~~~~~~~~~p~~~~~ 231 (565)
...+ +++.|..+|.+..+.+.. +...|
T Consensus 150 fe~n~ni~saRalflrgLR~npd-sp~Lw 177 (568)
T KOG2396|consen 150 FEINLNIESARALFLRGLRFNPD-SPKLW 177 (568)
T ss_pred HhhccchHHHHHHHHHHhhcCCC-ChHHH
Confidence 4444 489999999988887643 34444
No 445
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.77 E-value=3.4e+02 Score=24.90 Aligned_cols=116 Identities=11% Similarity=0.065 Sum_probs=61.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHH
Q 008454 203 YAHRKKFRNATDTFCQMRDYGFLPII-ESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVY-TLNMVMHAFCKLGIIE 280 (565)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~ 280 (565)
|....++..|+..|.+....+ |++ ..|..-+..+.+.++++.+..--...++. .||.. ....+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 334456777777666665544 554 44555666666677777766655555443 34433 2333444455566677
Q ss_pred HHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008454 281 RAVEVFKNMES----MGFIPSVTTYNTLISGHCNKGLLSLAMKFKN 322 (565)
Q Consensus 281 ~a~~~~~~m~~----~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 322 (565)
+|+..+.+... ..+.+.......|..+--+.-...+..++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 77777666532 2233344444445444333333334444333
No 446
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=36.60 E-value=1.9e+02 Score=22.50 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=12.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 008454 338 TLIFGFCKKGKLHEANRIFSEM 359 (565)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~m 359 (565)
.++..|...|+.++|..-+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3445555556666666666554
No 447
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=36.32 E-value=2.1e+02 Score=22.38 Aligned_cols=14 Identities=0% Similarity=0.065 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHC
Q 008454 384 SEMGASLYEEMLRN 397 (565)
Q Consensus 384 ~~~A~~~~~~m~~~ 397 (565)
.++|..+.+-+...
T Consensus 22 H~EA~tIa~wL~~~ 35 (116)
T PF09477_consen 22 HQEANTIADWLEQE 35 (116)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 34444444444433
No 448
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=36.04 E-value=3e+02 Score=24.16 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 443 ALITGQCVRKNSERAFQLYKSMIRSG--------------CRPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 443 ~li~~~~~~~~~~~A~~~~~~m~~~~--------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
+++..|-+..++.++.++++.|.+.. ..+.-...|.....|.+.|..|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34445556666666666666665432 123335567777888899999999988873
No 449
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=35.90 E-value=3.9e+02 Score=25.41 Aligned_cols=20 Identities=20% Similarity=0.644 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHcCCHHHH
Q 008454 403 ILTYNALILGLCKEGKTKKA 422 (565)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A 422 (565)
..+|.-|+.++|..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34577778888887776644
No 450
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.77 E-value=4.6e+02 Score=26.39 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=22.3
Q ss_pred HHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHH
Q 008454 146 VLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSIL 183 (565)
Q Consensus 146 l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~ 183 (565)
+..-+...|.|+.|..+|++=+---.+.+-..+|..+-
T Consensus 124 laadhvAAGsFetAm~LLnrQiGivnF~PLk~~Fl~~y 161 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNRQIGIVNFEPLKPLFLEVY 161 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHHHC-B---GGGHHHHHHHH
T ss_pred cHHHHHHhCCHHHHHHHHHHHhCccccHHHHHHHHHHH
Confidence 35566789999999999987554433444445554444
No 451
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.44 E-value=2.2e+02 Score=22.30 Aligned_cols=79 Identities=10% Similarity=0.024 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 417 GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVL 496 (565)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (565)
...++|..+.+.+...+.. ...+--+-+..+.+.|++++| +..-.. ...||...|-+|- -.+.|-.+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 3456666666666654331 112222223345566666666 111111 1245555554442 33556666665555
Q ss_pred HHHHHc
Q 008454 497 LEMLEK 502 (565)
Q Consensus 497 ~~~~~~ 502 (565)
.++..+
T Consensus 93 ~rla~~ 98 (116)
T PF09477_consen 93 TRLASS 98 (116)
T ss_dssp HHHCT-
T ss_pred HHHHhC
Confidence 555443
No 452
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.09 E-value=1.9e+02 Score=24.75 Aligned_cols=58 Identities=9% Similarity=-0.025 Sum_probs=31.1
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
...|+..+ ..-..++..+...++.-.|.++++.+.+.+...+..|..-.+..+.+.|-
T Consensus 18 ~~~GlR~T-~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLT-PQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCC-HHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 34455432 22234445555555555666666666666655555555555555555553
No 453
>PRK10941 hypothetical protein; Provisional
Probab=34.96 E-value=3.9e+02 Score=25.06 Aligned_cols=60 Identities=13% Similarity=0.026 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 442 SALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 442 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
+.+-.+|.+.++++.|+++.+.++... +.+..-+.--.-.|.+.|.+..|..-++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344455666667777777776666643 333444444444566666666666666666554
No 454
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.52 E-value=2.2e+02 Score=22.20 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~ 361 (565)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666666655
No 455
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.35 E-value=3.9e+02 Score=24.88 Aligned_cols=247 Identities=11% Similarity=0.083 Sum_probs=135.5
Q ss_pred cCChHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHC---CCC--CCHHHHHHHHHHHHHcC
Q 008454 206 RKKFRNATDTFCQMRDYGFLP---IIESCNKFLSSLLDSERVDIALGFYKEMRRN---RIS--PNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~--p~~~~~~~li~~~~~~g 277 (565)
..++++|+.-|.+..+..... ...+...++....+.+++++....|.+|... .+. -+....|.++..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 347899999999987753222 3456677888999999999999998888531 111 23456677777666555
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----C-------CHHHHHHHHH
Q 008454 278 IIERAVEVFKNMESM-GFIPSVT----TYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ----P-------NVITFNTLIF 341 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~-g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----~-------~~~~~~~li~ 341 (565)
+.+-..+.|+.-.+. .-.-+.. |-..|...|...|.+....+++.++.+.--. . =...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555444444332211 0000111 2234666777778888888888887643110 1 1345666677
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHH-----HHhcCChHHHHHHH-HHHHH---CCCCCCHH---HHHH
Q 008454 342 GFCKKGKLHEANRIFSEMKATN-VSPNVVTYNTLING-----YGQVGNSEMGASLY-EEMLR---NGIKVDIL---TYNA 408 (565)
Q Consensus 342 ~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~-----~~~~g~~~~A~~~~-~~m~~---~~~~~~~~---~~~~ 408 (565)
.|....+-.+-..++++..... --|.+.... +|+- ..+.|.+++|..-| +.... .|. |-.. -|..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs-pRRttCLKYLV 277 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS-PRRTTCLKYLV 277 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCC-cchhHHHHHHH
Confidence 7777777677777777655421 123333322 3333 34567777775433 33332 232 2222 2445
Q ss_pred HHHHHHHcCC----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008454 409 LILGLCKEGK----TKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYK 462 (565)
Q Consensus 409 li~~~~~~g~----~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 462 (565)
|.+++.+.|- -.+| .-..-.|.......|+.+|. .++..+-.++++
T Consensus 278 LANMLmkS~iNPFDsQEA-------KPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~ 327 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQEA-------KPYKNDPEILAMTNLVAAYQ-NNDIIEFERILK 327 (440)
T ss_pred HHHHHHHcCCCCCccccc-------CCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 5555555441 1111 11122345566777787774 344444444443
No 456
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=34.11 E-value=85 Score=17.21 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=14.7
Q ss_pred CChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008454 207 KKFRNATDTFCQMRDYGFLPIIESCNKFL 235 (565)
Q Consensus 207 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 235 (565)
|+.+.|..+|+++..... -+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHH
Confidence 345666666666655432 2445554444
No 457
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.57 E-value=2.6e+02 Score=22.57 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCChHHHHHHHHH
Q 008454 211 NATDTFCQMRDYGFLP-IIESCNKFLSSLLDSERVDIALGFYKE 253 (565)
Q Consensus 211 ~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~ 253 (565)
++.++|..|...|+-. ....|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7777788877766543 355667777777777777777777764
No 458
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.53 E-value=5.1e+02 Score=26.05 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 452 KNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 452 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
.+.+.|+..+..|++.|..|....-..++.++
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55666666666666655555443333333333
No 459
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=33.12 E-value=1.5e+02 Score=19.67 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=9.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 008454 447 GQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 447 ~~~~~~~~~~A~~~~~~m~~~ 467 (565)
++.+.|++++|.+..+.+++.
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhh
Confidence 344444444444444444443
No 460
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=32.64 E-value=2.5e+02 Score=28.55 Aligned_cols=22 Identities=14% Similarity=-0.013 Sum_probs=15.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC
Q 008454 518 LHHCGKDELAMKLFRKMEIRGL 539 (565)
Q Consensus 518 ~~~~g~~~~A~~~~~~m~~~g~ 539 (565)
|.-.|...++-..|++|..+|.
T Consensus 403 wlg~~eR~~~~l~fNe~V~~Ge 424 (545)
T TIGR01228 403 WLGYGERAKLGLAINEMVRSGE 424 (545)
T ss_pred hcCccHHHHHHHHHHHHHHcCC
Confidence 4445666777778999988873
No 461
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.49 E-value=2.3e+02 Score=21.62 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=54.8
Q ss_pred HHHHHhccCCChhHHhhhccCCChHHHHHHHHhhcCChHHHHHHHH-HHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHH
Q 008454 83 NIAYSHLIHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFT-WVQTHKPSSLTLETHSIVLHILTKNRKFKSSES 161 (565)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~~~al~~f~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ 161 (565)
+.+...+....|..+-+. -.++...+..+-...+++.+...+.+. |..+ .| ...++..++.+|.+.+.-..|..
T Consensus 11 ~~i~~~V~~~~Wk~laR~-LGLse~~I~~i~~~~~~~~eq~~qmL~~W~~~-~G---~~At~~~L~~aL~~~~~~~~Ae~ 85 (96)
T cd08315 11 DHFIKEVPFDSWNRLMRQ-LGLSENEIDVAKANERVTREQLYQMLLTWVNK-TG---RKASVNTLLDALEAIGLRLAKES 85 (96)
T ss_pred HHHHHHCCHHHHHHHHHH-cCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh-hC---CCcHHHHHHHHHHHcccccHHHH
Confidence 334444444456655442 246777777766666666666666665 4444 33 24468899999999999999988
Q ss_pred HHHHHhhcC
Q 008454 162 ILRGILDSD 170 (565)
Q Consensus 162 ll~~~~~~~ 170 (565)
+-+.+..+|
T Consensus 86 I~~~l~~~~ 94 (96)
T cd08315 86 IQDELISSG 94 (96)
T ss_pred HHHHHHHcC
Confidence 888777765
No 462
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=32.46 E-value=1.2e+02 Score=30.59 Aligned_cols=107 Identities=9% Similarity=0.053 Sum_probs=68.1
Q ss_pred HHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 008454 146 VLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL 225 (565)
Q Consensus 146 l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 225 (565)
-+.-+.+.+.|+.|..++.++++. .+.....|..-..++.+.+++..|+.=+.+..+....
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l-------------------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~ 70 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL-------------------DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT 70 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc-------------------CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch
Confidence 344555677888888888888876 3334444555557788888888888888777775522
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 226 PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274 (565)
Q Consensus 226 p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 274 (565)
-...|..-..++.+.+++.+|+..|+.... +.|+......++.-|-
T Consensus 71 -~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 71 -YIKAYVRRGTAVMALGEFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred -hhheeeeccHHHHhHHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 233444444455555666777777766654 4677766666665443
No 463
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.24 E-value=5.2e+02 Score=25.70 Aligned_cols=56 Identities=21% Similarity=0.141 Sum_probs=35.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHhC
Q 008454 376 NGYGQVGNSEMGASLYEEMLRNGIKVDIL--TYNALILGLC--KEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~~ 432 (565)
..+.+.+++..|.++++.+... +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778888888888888876 443333 3444445544 355677777777776553
No 464
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.98 E-value=3.3e+02 Score=28.93 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=62.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 233 KFLSSLLDSERVDIALGFYKEMRRN--RISPNVYTLNMVMHAFCKLGIIE------RAVEVFKNMESMGFIPSVTTYNTL 304 (565)
Q Consensus 233 ~ll~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~p~~~~~~~l 304 (565)
+++.+|...|++..+.++++..... |-+.-...||..|+...+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999998754 32334567888899999998764 3444444433 44578888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 008454 305 ISGHCNKGLLSLAMKFKNLMEK 326 (565)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~m~~ 326 (565)
+.+-..--.-....-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776654444444445555544
No 465
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.84 E-value=5.8e+02 Score=26.14 Aligned_cols=375 Identities=13% Similarity=0.091 Sum_probs=197.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHH--hhc--CCC-CCCHHHHHHHHHHHHhCC-CchhHHHHHHHHhhcCCCCCcHHHHHHH
Q 008454 109 VKHVLLKVQKDYVLSLEFFTWV--QTH--KPS-SLTLETHSIVLHILTKNR-KFKSSESILRGILDSDSFDLPSKLFDSI 182 (565)
Q Consensus 109 ~~~~l~~~~~~~~~al~~f~~~--~~~--~~~-~~~~~~~~~l~~~l~~~~-~~~~a~~ll~~~~~~~~~~~~~~~~~~~ 182 (565)
.-.++.+..++.+.|..-.+.+ ... +.| ..-.+++..+.+++.... .+..+..++++.++...-.+ .
T Consensus 52 Lg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p---~---- 124 (629)
T KOG2300|consen 52 LGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP---Y---- 124 (629)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc---h----
Confidence 3345666677888887776643 221 112 223467777777777665 89999999999887631100 0
Q ss_pred HHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH------cC---CChHHHHHHHHH
Q 008454 183 LYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLL------DS---ERVDIALGFYKE 253 (565)
Q Consensus 183 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~------~~---~~~~~A~~~~~~ 253 (565)
.+-.....|+....-.+|+..|.+++.---+.. .+--..|..++-.+. .. .++..+.....+
T Consensus 125 --------wsckllfQLaql~~idkD~~sA~elLavga~sA-d~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~q 195 (629)
T KOG2300|consen 125 --------WSCKLLFQLAQLHIIDKDFPSALELLAVGAESA-DHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQ 195 (629)
T ss_pred --------hhHHHHHHHHHHHhhhccchhHHHHHhcccccc-chhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 012233456777778889999988844322211 112223332222221 22 334455555566
Q ss_pred HHHCCCCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHhC---CC------------CCCHHHHHHHHH----
Q 008454 254 MRRNRISPNVYT--------LNMVMHAFCKLGIIERAVEVFKNMESM---GF------------IPSVTTYNTLIS---- 306 (565)
Q Consensus 254 m~~~~~~p~~~~--------~~~li~~~~~~g~~~~a~~~~~~m~~~---g~------------~p~~~~~~~li~---- 306 (565)
|.+. +.+|..- .+.-+..|...|+...+...++++.+. +- .|....+.-+..
T Consensus 196 i~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqic 274 (629)
T KOG2300|consen 196 IWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQIC 274 (629)
T ss_pred HHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhH
Confidence 6544 4445322 122234456678888888888877542 11 122221111111
Q ss_pred ---------HHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHhCC-
Q 008454 307 ---------GHCNKGLLSLAMKFKNLMEKN----GIQP-NVITFNT--------LIFGFCKKGKLHEANRIFSEMKATN- 363 (565)
Q Consensus 307 ---------~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~--------li~~~~~~g~~~~A~~~~~~m~~~~- 363 (565)
.-...|-+++|.++-++.... .-.+ ....++. ++-+-.-.|++.+|++-+..|.+.-
T Consensus 275 aLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~ 354 (629)
T KOG2300|consen 275 ALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCT 354 (629)
T ss_pred hhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 001234555666555544321 1111 1222211 1222234699999999999998742
Q ss_pred CCCCH--------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008454 364 VSPNV--------VTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTY--NALILGLCKEGKTKKAAYLVKDLDKNS 433 (565)
Q Consensus 364 ~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~ 433 (565)
-.|.+ .....+...++..+.++.|..-|....+.--..|...+ ..+.-.|.+.|+.+.-.++++.+...+
T Consensus 355 r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~n 434 (629)
T KOG2300|consen 355 RFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLN 434 (629)
T ss_pred hCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCC
Confidence 12321 11122233345678899999999887765433344433 345566888888777777777654321
Q ss_pred CCCC-HH-HHH--HHHHH--HHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 434 LVPN-AS-TYS--ALITG--QCVRKNSERAFQLYKSMIRSGCRPN-----KHIFEMLMSTFCQNEDFDRAAEVLLEML 500 (565)
Q Consensus 434 ~~p~-~~-~~~--~li~~--~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 500 (565)
-.+- .. .-+ .++.+ ....+++.+|...+++-++..-.-| .-....|...+...|+..++.+..+-..
T Consensus 435 t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 435 TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHH
Confidence 1110 00 001 11122 2367899999999988776421111 1122333445566788888877765543
No 466
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.30 E-value=4.3e+02 Score=24.54 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=9.9
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 008454 448 QCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 448 ~~~~~~~~~A~~~~~~m~~ 466 (565)
|...++...|..++....+
T Consensus 151 yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 3445555555555555443
No 467
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=31.11 E-value=5e+02 Score=25.23 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 454 SERAFQLYKSMIRSGCRPNK----HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLH 519 (565)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 519 (565)
.++...++.+++.. -|+. ..|-.++......|.++.++.+|++++..|..|-...-..+++.+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34556666666654 3443 3455556666667777777777777777777766665555555544
No 468
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=30.91 E-value=6.6e+02 Score=27.35 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=48.7
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C------------CCHHHHHHHHHHHHh
Q 008454 420 KKAAYLVKDL-DKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC-R------------PNKHIFEMLMSTFCQ 485 (565)
Q Consensus 420 ~~A~~~~~~~-~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~------------p~~~~~~~li~~~~~ 485 (565)
++....+..+ .+.|+..+......++... .|+...++.+++++...|- . .+......++.++.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~- 257 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII- 257 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH-
Confidence 4444455444 4456766777777776653 6889999999988775321 1 11222233333333
Q ss_pred cCCHHHHHHHHHHHHHcCCCC
Q 008454 486 NEDFDRAAEVLLEMLEKCMAP 506 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p 506 (565)
.++...++.+++++...|..+
T Consensus 258 ~~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 258 NQDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred cCCHHHHHHHHHHHHHhCCCH
Confidence 366666777777666665543
No 469
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=30.67 E-value=93 Score=31.30 Aligned_cols=102 Identities=14% Similarity=0.042 Sum_probs=50.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVPNASTY-SALITGQCVRKNSERAFQLYKSMIRSGCRPN-KHIFEMLMSTFCQNED 488 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 488 (565)
+.+...+.++.|..++.++++. .||...| ..=..++.+.+++..|+.=+..+++.. |+ ...|-.=..++.+.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHH
Confidence 3344556666666666666654 3433322 222255556666666665555555542 22 2223333334444555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 489 FDRAAEVLLEMLEKCMAPDSIILSELYSGL 518 (565)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 518 (565)
+.+|...|+.... +.|+..-....++-|
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 5555555555544 345555444444433
No 470
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=30.35 E-value=1.8e+02 Score=19.95 Aligned_cols=49 Identities=27% Similarity=0.277 Sum_probs=25.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 008454 483 FCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGL-----HHCGKDELAMKLF 531 (565)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~~ 531 (565)
+...|++-+|-++++.+=.....+....+..||... .+.|+.+.|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 345666777777776664332223444555554433 3456666665543
No 471
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=30.33 E-value=5.4e+02 Score=25.34 Aligned_cols=233 Identities=9% Similarity=-0.015 Sum_probs=0.0
Q ss_pred hCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH-----------
Q 008454 152 KNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMR----------- 220 (565)
Q Consensus 152 ~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------- 220 (565)
....+.++...|..++..+. -+.++...+..|-...++-.+...+...|+.+.|.+++++..
T Consensus 6 hs~~Y~~~q~~F~~~v~~~D-------p~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F 78 (360)
T PF04910_consen 6 HSKAYQEAQEQFYAAVQSHD-------PNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSF 78 (360)
T ss_pred CCHHHHHHHHHHHHHHHccC-------HHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred --------------HCCCCcCHHHHHHH---HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 008454 221 --------------DYGFLPIIESCNKF---LSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC-KLGIIERA 282 (565)
Q Consensus 221 --------------~~~~~p~~~~~~~l---l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a 282 (565)
.....-|-..|.++ +..+.+.|.+..|+++.+-+...+..-|......+|+.|+ +.++++--
T Consensus 79 ~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~L 158 (360)
T PF04910_consen 79 SPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWL 158 (360)
T ss_pred hhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHH
Q ss_pred HHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCC--------------hhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 283 VEVFKNMESMGFIPS------VTTYNTLISGHCNKGL--------------LSLAMKFKNLMEKNGIQPNVITFNTLIFG 342 (565)
Q Consensus 283 ~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~--------------~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 342 (565)
+++.+..... ...+ -..|...+..+...+. .+.|...+.+.... -+.+...|++.
T Consensus 159 i~~~~~~~~~-~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~ 233 (360)
T PF04910_consen 159 IDFSESPLAK-CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDK 233 (360)
T ss_pred HHHHHhHhhh-hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHH
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHH
Q 008454 343 FCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVG----NSEMGASLYEEMLR 396 (565)
Q Consensus 343 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~ 396 (565)
+.-.++..-...-.-.-...+..+.......++..|+... +..++...+++...
T Consensus 234 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~lYv~R~~~LWk~~~~l~wL~~~~~ 291 (360)
T PF04910_consen 234 LGISPDSSVSNHPHFSPSSWSSEPPSDSLKLLTELYVERSKDLWKEPEVLSWLEDNAE 291 (360)
T ss_pred hccccchhhhcCCCCcccccccCCchhHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
No 472
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.24 E-value=1.3e+02 Score=23.52 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 242 ERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 242 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
+..-.|.++++.+.+.+...+..|..-.+..+.+.|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333344444444444443344444443444444433
No 473
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=30.20 E-value=4.7e+02 Score=26.32 Aligned_cols=168 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred hCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHH-
Q 008454 152 KNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIES- 230 (565)
Q Consensus 152 ~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~- 230 (565)
.....++|+.+.++....|....- |-.-.|.+++.++.++|+.||..+
T Consensus 215 ~a~~ldeAl~~a~~~~~ag~p~SI-------------------------------gl~GNaaei~~~l~~r~~~pD~vtD 263 (561)
T COG2987 215 IAETLDEALALAEEATAAGEPISI-------------------------------GLLGNAAEILPELLRRGIRPDLVTD 263 (561)
T ss_pred hcCCHHHHHHHHHHHHhcCCceEE-------------------------------EEeccHHHHHHHHHHcCCCCceecc
Q ss_pred ---HHHHHHHHHcCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------Hh
Q 008454 231 ---CNKFLSSLLDSER-VDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNM---------------ES 291 (565)
Q Consensus 231 ---~~~ll~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m---------------~~ 291 (565)
+.-.+.+|+-.|- ++++.++..+ |...|..+... ...+.-+|...|+.. .+
T Consensus 264 QTsaHdp~~GY~P~G~s~ee~~~lr~~--------d~~~~~~~a~~--sm~~hv~Aml~~q~~G~~~fDYGNnirq~a~d 333 (561)
T COG2987 264 QTSAHDPLNGYLPVGYTVEEADELREE--------DPDKYRKLARA--SMARHVEAMLAFQDRGVPTFDYGNNIRQVAKD 333 (561)
T ss_pred cccccCcccCcCCCcCCHHHHHHHHhh--------CHHHHHHHHHH--HHHHHHHHHHHHHHcCCeeeecchHHHHHHHh
Q ss_pred CCCCCCHHHHHHHHHHHHh---------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---------------
Q 008454 292 MGFIPSVTTYNTLISGHCN---------------KGLLSLAMKFKNLMEKNGIQPNVITFNTLIF--------------- 341 (565)
Q Consensus 292 ~g~~p~~~~~~~li~~~~~---------------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--------------- 341 (565)
.|.+ +...|-..+-+|.+ .|+.+...+.=+.+.+. -|+-..+...|+
T Consensus 334 ~G~~-~aF~fPgfVpayIrPLFc~G~GPFRW~aLSgdpeDi~~tD~~~~el--~p~n~~l~~Wid~A~e~i~fqGlpARI 410 (561)
T COG2987 334 EGVE-NAFDFPGFVPAYIRPLFCEGIGPFRWVALSGDPEDIYKTDAAVKEL--FPDNKHLHRWIDMARERIAFQGLPARI 410 (561)
T ss_pred cccc-ccccCCcchHHhhhhhhhcCcCCeeEEEecCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHhcCccccCccee
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC
Q 008454 342 GFCKKGKLHEANRIFSEMKATN 363 (565)
Q Consensus 342 ~~~~~g~~~~A~~~~~~m~~~~ 363 (565)
+|...|.-.+.--.|++|.+.|
T Consensus 411 cw~g~geR~r~gLafNemVr~G 432 (561)
T COG2987 411 CWLGLGERARIGLAFNEMVRNG 432 (561)
T ss_pred eecccchHHHHHHHHHHHHhcC
No 474
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.33 E-value=1.5e+02 Score=27.21 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=11.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 008454 198 LLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~ 219 (565)
.+...|.+.|++++|+++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555555555555555554
No 475
>PRK12798 chemotaxis protein; Reviewed
Probab=29.30 E-value=5.9e+02 Score=25.48 Aligned_cols=27 Identities=11% Similarity=0.114 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
.|-.+.+.-.-.|+.+-|...-.+...
T Consensus 259 lYL~iAR~Ali~Gk~~lA~~As~~A~~ 285 (421)
T PRK12798 259 LYLRIARAALIDGKTELARFASERALK 285 (421)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 444444544555555555544444443
No 476
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.82 E-value=5.6e+02 Score=25.08 Aligned_cols=265 Identities=14% Similarity=0.112 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhhcC-ChHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHH
Q 008454 105 TPFRVKHVLLKVQK-DYVLSLEFFTWVQTHKPS-SLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSI 182 (565)
Q Consensus 105 ~~~~~~~~l~~~~~-~~~~al~~f~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~ 182 (565)
.+..+..++..+.- ....+..++-.+.-+.+. .+++++.-.++.-+....+-+.-+-+-..+...
T Consensus 38 ~~~~~~~~L~~ld~~~hSlgml~~l~~~f~~~~~~~~~~~li~~~~~FV~~~n~eqlr~as~~f~~l------------- 104 (422)
T KOG2582|consen 38 NSSDLDAVLLHLDPQVHSLGMLAVLKVKFHTPSANPDPETLIELLNDFVDENNGEQLRLASEIFFPL------------- 104 (422)
T ss_pred CcchHHHHHHhcCccccchhhhhhhhccccCcccCCCHHHHHHHHHHHHHhcChHHHhhHHHHHHHH-------------
Q ss_pred HHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHCC-
Q 008454 183 LYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI---IESCNKFLSSLLDSERVDIALGFYKEMRRNR- 258 (565)
Q Consensus 183 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~- 258 (565)
.+.+..++.+.+++...+.+..+....-...+ ......++..+.+.+++.-++..++.-...-
T Consensus 105 -------------c~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~ 171 (422)
T KOG2582|consen 105 -------------CHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEIC 171 (422)
T ss_pred -------------HHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHh
Q ss_pred -----CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--------cCChhHHHHHHHH
Q 008454 259 -----ISPNVYTLNMVMHAFCKLG--IIERAVEVFKNMESMGFIPSVTTYNTLISGHCN--------KGLLSLAMKFKNL 323 (565)
Q Consensus 259 -----~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--------~g~~~~a~~~~~~ 323 (565)
++|.......+-.+|.-.| +++.|+-+|+..... |....-...+.+|-+ .|.....-+.-..
T Consensus 172 ~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~ 248 (422)
T KOG2582|consen 172 KANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT---PAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQ 248 (422)
T ss_pred ccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhhcCceeeccccchh
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHh
Q 008454 324 MEKNGIQPNVITFNTLIFGFC-------------------KKGKLHEANRIFSEMKATNVSPNVVTYNTL----INGYGQ 380 (565)
Q Consensus 324 m~~~g~~~~~~~~~~li~~~~-------------------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l----i~~~~~ 380 (565)
....-.+|-...|.-+.++|. +-++..-|...+..+.++.+..=..+|.++ |....+
T Consensus 249 ~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQ 328 (422)
T KOG2582|consen 249 NAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQ 328 (422)
T ss_pred hhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred cCChHHHHHHHHHHHHCC
Q 008454 381 VGNSEMGASLYEEMLRNG 398 (565)
Q Consensus 381 ~g~~~~A~~~~~~m~~~~ 398 (565)
.+..++|.+..-+|.+.|
T Consensus 329 La~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 329 LASAQEVEKYILQMIEDG 346 (422)
T ss_pred hcchHHHHHHHHHHhccC
No 477
>PRK12798 chemotaxis protein; Reviewed
Probab=28.68 E-value=6.1e+02 Score=25.41 Aligned_cols=195 Identities=13% Similarity=0.152 Sum_probs=107.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 346 KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYG-QVGNSEMGASLYEEMLRN--GIKVDILTYNALILGLCKEGKTKKA 422 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A 422 (565)
.|+.++|.+.+..+.....++....|-.|+.+-. ...+..+|+++|+...-. |--........-+....+.|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 5777777777777666555666666666665443 334677777777766532 2222233344445555667777776
Q ss_pred HHHHHHHHhCC-CCCCHHHH-HHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 008454 423 AYLVKDLDKNS-LVPNASTY-SALITGQCVRK---NSERAFQLYKSMIRSGCRPN--KHIFEMLMSTFCQNEDFDRAAEV 495 (565)
Q Consensus 423 ~~~~~~~~~~~-~~p~~~~~-~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 495 (565)
..+-.+...+- ..|-...| ..+..++.+.. ..+....++..| .|+ ...|-.+...-...|+.+-|...
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~-----d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFM-----DPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 55554443321 11222222 22222333332 223333333333 232 45788888888889999999888
Q ss_pred HHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 008454 496 LLEMLEKCMAPDS-----IILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKL 547 (565)
Q Consensus 496 ~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 547 (565)
-++.....-..+. ..|... +-.-..+++++.+.+..+....+.|....+.
T Consensus 280 s~~A~~L~~~~~~~~~ra~LY~aa--a~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll 334 (421)
T PRK12798 280 SERALKLADPDSADAARARLYRGA--ALVASDDAESALEELSQIDRDKLSERDRALL 334 (421)
T ss_pred HHHHHHhccCCCcchHHHHHHHHH--HccCcccHHHHHHHHhcCChhhCChhhHHHH
Confidence 8887765322111 122222 1223566888888888887777776554433
No 478
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.59 E-value=3.4e+02 Score=22.49 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 314 LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 314 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4445555555554443334443333333333333
No 479
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=28.36 E-value=4.6e+02 Score=23.95 Aligned_cols=105 Identities=13% Similarity=0.232 Sum_probs=71.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------------CCCCCHHHH
Q 008454 374 LINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN------------SLVPNASTY 441 (565)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------~~~p~~~~~ 441 (565)
.+--|.+..+.+-..++.+-....++.-+.....+++ +...|+..+|+..++.-... --.|.+...
T Consensus 165 AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v 242 (333)
T KOG0991|consen 165 AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLV 242 (333)
T ss_pred HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHH
Confidence 3334556666666666666666667766666666555 35789999999888864321 124667777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 442 SALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMST 482 (565)
Q Consensus 442 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 482 (565)
..++..| ..+++++|.+++.++-+.|+.|... .+.+...
T Consensus 243 ~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv 281 (333)
T KOG0991|consen 243 KKMLQAC-LKRNIDEALKILAELWKLGYSPEDI-ITTLFRV 281 (333)
T ss_pred HHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHH-HHHHHHH
Confidence 7777765 5678999999999999999877543 3444444
No 480
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.34 E-value=97 Score=24.61 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=20.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 233 KFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 233 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
.++..+...+..-.|.++++.+.+.+...+..|..--+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444444444455555555555544444444444444444443
No 481
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=28.31 E-value=8.3e+02 Score=26.86 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=72.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCC------CCCcHHHHHHHHHh----cccC-CCChHHHHHHHHHH
Q 008454 135 PSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDS------FDLPSKLFDSILYS----YRMC-DSSPLVFDLLFKTY 203 (565)
Q Consensus 135 ~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~------~~~~~~~~~~~~~~----~~~~-~~~~~~~~~li~~~ 203 (565)
+...+.++...++... .|+..++..+++.+..... ...........+.. |... .........+++.
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ks- 268 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKS- 268 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHH-
Confidence 3456677777777653 7888888888887654211 11222223333221 2111 1122223333333
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 204 AHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSER-----VDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
++.+|++.|+..+.+|.+.|..|....-..++.+.-.-|. ...|...++.....|.+--........-.++..-+
T Consensus 269 irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apK 348 (725)
T PRK13341 269 LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPK 348 (725)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCC
Confidence 3457899999999999998877654444444444433343 22244444444555544333333333333343333
Q ss_pred HH
Q 008454 279 IE 280 (565)
Q Consensus 279 ~~ 280 (565)
-.
T Consensus 349 Sn 350 (725)
T PRK13341 349 SN 350 (725)
T ss_pred cc
Confidence 33
No 482
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.18 E-value=7e+02 Score=25.98 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 008454 338 TLIFGFCKKGKLHEANRIFSEM 359 (565)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~m 359 (565)
.++.-|.+.+++++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 3555666666666666666555
No 483
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.88 E-value=3.3e+02 Score=23.34 Aligned_cols=36 Identities=14% Similarity=0.007 Sum_probs=15.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 312 GLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 312 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
++.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 334445555555554444444443333334444333
No 484
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.84 E-value=1.5e+02 Score=20.72 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDS 241 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 241 (565)
...++.++..+++..-.++++..+.+....|.- +..+|..-++.+++.
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLARE 55 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 345666667777767777777777777777654 566666666655543
No 485
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.56 E-value=7.2e+02 Score=25.89 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=9.2
Q ss_pred CChHHHHHHHHHHHHCC
Q 008454 242 ERVDIALGFYKEMRRNR 258 (565)
Q Consensus 242 ~~~~~A~~~~~~m~~~~ 258 (565)
++.+.|+.+++++...|
T Consensus 255 ~d~~~Al~~l~~Ll~~G 271 (504)
T PRK14963 255 GDAAEALSGAAQLYRDG 271 (504)
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 45555555555555554
No 486
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=27.48 E-value=3.1e+02 Score=27.58 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=12.6
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 008454 413 LCKEGKTKKAAYLVKDLDK 431 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~ 431 (565)
+...|++.+|+..|+.+..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~ 232 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILH 232 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 3467788888888877653
No 487
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.42 E-value=2.6e+02 Score=20.79 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (565)
++|+-....|+..|..+|..+++.+.-+=-.+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444455555555555554444433444444444444
No 488
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.37 E-value=4.9e+02 Score=23.90 Aligned_cols=118 Identities=11% Similarity=-0.039 Sum_probs=65.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCH
Q 008454 377 GYGQVGNSEMGASLYEEMLRNGIKVDI-LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNAS-TYSALITGQCVRKNS 454 (565)
Q Consensus 377 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~ 454 (565)
-|.....++.|...|.+.+.. .|+. .-|..=+.++.+..+++.+..=-....+ +.||.. ....+..++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 344556677777766666553 4555 3345556666777777766554444444 345544 334445556667777
Q ss_pred HHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 455 ERAFQLYKSMIR----SGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 455 ~~A~~~~~~m~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
++|+..+.+... +.+.+-......|..+=-+.=...+..++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 888877777643 23344445555555443333334444454443
No 489
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=27.35 E-value=3.4e+02 Score=21.99 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=28.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcC
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSD 170 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~ 170 (565)
+++..|.+++.+....+ .+..+++.+....---.+.++..++....
T Consensus 3 nNp~IA~~~l~~l~~s~-------~~~~yld~lv~~~~sl~s~EvVn~L~~~~ 48 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP-------NFKEYLDVLVSMDMSLHSMEVVNRLTTSF 48 (126)
T ss_pred CcHHHHHHHHHHHcCCc-------hHHHHHHHHHcCCCchhHHHHHHHHHcCC
Confidence 35566666665554322 25566677777777777777777777663
No 490
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.29 E-value=7.3e+02 Score=25.87 Aligned_cols=61 Identities=10% Similarity=0.027 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFL-PIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
...++.-|.+.+++++|+.++..|.=.-.. --..+.+.+++.+.+..--++....++.+..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 345778899999999999999888432110 1223445566666666545555555555544
No 491
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.99 E-value=2.9e+02 Score=21.19 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHh
Q 008454 493 AEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTIN 551 (565)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 551 (565)
.+.++++...+.....-....|.-.|.+.|+.+.|.+-|+.= +.+-|.+.+|.-.+-
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetE--KalFPES~~fmDFLm 113 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETE--KALFPESGVFMDFLM 113 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHh--hhhCccchhHHHHHH
Confidence 334444444433333333344455566666666665555532 334555555554443
No 492
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.85 E-value=5.6e+02 Score=24.40 Aligned_cols=146 Identities=12% Similarity=0.132 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008454 384 SEMGASLYEEMLRNGI----KVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQ 459 (565)
Q Consensus 384 ~~~A~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 459 (565)
.+.|.+.|+.....+. ..+......++....+.|..+.-..+++..... .+...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567778888777522 446666667777777777766655555555543 467777888888888888888888
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHhcCC--HHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008454 460 LYKSMIRSG-CRPNKHIFEMLMSTFCQNED--FDRAAEVL----LEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFR 532 (565)
Q Consensus 460 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~--~~~A~~~~----~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 532 (565)
+++.....+ +++. ..+ .++.++...+. .+.+.+++ +.+.+. ...+......++..+...-..++-.+-++
T Consensus 223 ~l~~~l~~~~v~~~-d~~-~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQ-DIR-YVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHCTSTS-TT-THH-HHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHcCCcccccH-HHH-HHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 888888754 4333 333 33334442333 35555554 333332 22222244555554443333333333344
Q ss_pred HHH
Q 008454 533 KME 535 (565)
Q Consensus 533 ~m~ 535 (565)
++.
T Consensus 300 ~f~ 302 (324)
T PF11838_consen 300 EFF 302 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 493
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=26.47 E-value=1.8e+02 Score=20.71 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=13.8
Q ss_pred CCCChHHHHHHHHHHHhcC
Q 008454 189 CDSSPLVFDLLFKTYAHRK 207 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g 207 (565)
...+|..||++.+.+.+++
T Consensus 27 ekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 27 EKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred hhcChHHHHHHHHHHHHcc
Confidence 3457888998888777654
No 494
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.39 E-value=8.3e+02 Score=26.24 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=46.8
Q ss_pred HHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C------------CCHHHHHHHHHHHHh
Q 008454 420 KKAAYLVKD-LDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC-R------------PNKHIFEMLMSTFCQ 485 (565)
Q Consensus 420 ~~A~~~~~~-~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~------------p~~~~~~~li~~~~~ 485 (565)
++....+.. +.+.|+..+......++.. ..|+...++.+++++...|- . .+......++.++.
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~- 262 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA- 262 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-
Confidence 344444443 3456776677666666653 45888888888876654321 1 12222233333333
Q ss_pred cCCHHHHHHHHHHHHHcCCCC
Q 008454 486 NEDFDRAAEVLLEMLEKCMAP 506 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p 506 (565)
.|+...++.+++++.+.|..+
T Consensus 263 ~~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 263 QGDGRTVVETADELRLNGLSA 283 (618)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 366666777776666665543
No 495
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.15 E-value=44 Score=31.91 Aligned_cols=68 Identities=6% Similarity=-0.222 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI 259 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 259 (565)
+....|..-.+++.+.+++..|+.=++...+.+.. ....|-.--.+-...|++++|...+....+.++
T Consensus 146 ~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 146 PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred chhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 34444555555566666666666655555553321 122233333333334555555555555544443
No 496
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=24.88 E-value=9.8e+02 Score=26.53 Aligned_cols=46 Identities=9% Similarity=0.064 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 349 LHEANRIFSEMK-ATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 349 ~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
.++..+.++... ..|+..+......+... ..|+...|+.++++...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia 226 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 455666666654 34666666666555543 36888888888877654
No 497
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=24.77 E-value=4e+02 Score=23.62 Aligned_cols=63 Identities=14% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
...+.+++.+.-.|+++.|-+.|..+.......--..|..=+..+.+.+.-....+.++.|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 498
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=24.60 E-value=5.4e+02 Score=23.48 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=14.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFL 235 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 235 (565)
++.+-+.|+++++++.+.++...+...+..-.|.+-
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLls 43 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLS 43 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHH
Confidence 333444444444444444444444333333333333
No 499
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.48 E-value=54 Score=31.38 Aligned_cols=119 Identities=14% Similarity=0.051 Sum_probs=77.8
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK-HIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A 492 (565)
...|.++.|++.|...++.+. +....|..=.+++.+.+....|++=++..++. .||. .-|-.--.+-.-.|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 456778888888888777643 35566666677778888888888877777764 3443 2343334445557888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 493 AEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
...|+...+.++.+.... .+=...-+.+..++-...+++.++.
T Consensus 202 a~dl~~a~kld~dE~~~a--~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSA--TLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHhccccHHHHH--HHHHhccchhhhhhchhHHHHHHHH
Confidence 888888888766544433 3344555566666666666655544
No 500
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=24.47 E-value=3e+02 Score=20.49 Aligned_cols=63 Identities=8% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 470 RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
.|....|..-+........-+. ++|+-....|+..|..+|..+++.+...=-.+...++++.|
T Consensus 7 ~~~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 7 SPTAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred CChHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Done!