Query 008454
Match_columns 565
No_of_seqs 693 out of 3229
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 03:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.4E-35 3.2E-39 307.2 39.6 413 116-560 96-567 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.6E-33 1.2E-37 295.0 43.2 424 114-554 127-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.6E-30 5.6E-35 264.3 23.5 207 315-521 7-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.9E-27 1.7E-31 234.2 47.6 382 146-557 5-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 5.4E-30 1.9E-34 260.5 26.3 208 280-487 7-224 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-26 3.8E-31 231.6 48.2 381 113-523 8-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.5E-22 8.5E-27 204.2 41.4 365 189-562 22-444 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.2E-22 4.1E-27 210.1 37.4 376 140-544 6-483 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 5.5E-22 1.9E-26 201.6 40.4 334 138-499 24-406 (450)
10 2gw1_A Mitochondrial precursor 99.9 8.5E-22 2.9E-26 203.7 39.0 366 110-503 12-479 (514)
11 3fp2_A TPR repeat-containing p 99.9 8.5E-21 2.9E-25 197.4 39.6 371 140-538 25-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 2.4E-19 8.2E-24 186.4 42.9 365 110-503 31-492 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.3E-18 4.6E-23 170.5 41.2 303 192-501 2-334 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.5E-18 5E-23 170.2 40.4 320 139-484 2-351 (359)
15 2xm6_A Protein corresponding t 99.9 2.5E-16 8.6E-21 161.6 52.8 352 139-538 38-433 (490)
16 2xm6_A Protein corresponding t 99.8 6.3E-16 2.2E-20 158.6 51.4 370 117-537 56-467 (490)
17 3hym_B Cell division cycle pro 99.8 5.3E-18 1.8E-22 164.3 32.1 279 233-518 27-314 (330)
18 3hym_B Cell division cycle pro 99.8 5.7E-18 2E-22 164.0 32.1 295 189-490 18-322 (330)
19 1fch_A Peroxisomal targeting s 99.8 5.4E-18 1.9E-22 167.1 26.5 288 241-533 38-355 (368)
20 2ooe_A Cleavage stimulation fa 99.8 6.2E-16 2.1E-20 160.3 43.1 396 116-537 24-492 (530)
21 1fch_A Peroxisomal targeting s 99.8 5E-18 1.7E-22 167.3 25.7 289 205-499 37-356 (368)
22 2ooe_A Cleavage stimulation fa 99.8 4.1E-15 1.4E-19 154.2 45.9 406 128-561 3-481 (530)
23 4eqf_A PEX5-related protein; a 99.8 3.6E-17 1.2E-21 161.1 25.1 265 263-533 65-352 (365)
24 3cv0_A Peroxisome targeting si 99.8 3.4E-16 1.2E-20 151.2 29.2 261 268-534 26-312 (327)
25 4eqf_A PEX5-related protein; a 99.8 9.4E-17 3.2E-21 158.1 24.7 234 193-430 65-308 (365)
26 3cv0_A Peroxisome targeting si 99.8 1.8E-16 6E-21 153.2 25.2 279 193-499 21-312 (327)
27 1xi4_A Clathrin heavy chain; a 99.8 2.2E-14 7.5E-19 154.8 43.2 372 138-562 983-1374(1630)
28 3mkr_A Coatomer subunit epsilo 99.7 1.3E-15 4.4E-20 144.4 28.0 254 200-467 6-264 (291)
29 3mkr_A Coatomer subunit epsilo 99.7 1.1E-15 3.9E-20 144.8 26.6 273 236-529 7-286 (291)
30 3spa_A Mtrpol, DNA-directed RN 99.7 1E-17 3.5E-22 175.0 13.2 118 403-520 127-248 (1134)
31 3spa_A Mtrpol, DNA-directed RN 99.7 6.8E-18 2.3E-22 176.4 11.1 120 227-346 126-249 (1134)
32 1b89_A Protein (clathrin heavy 99.7 1E-16 3.6E-21 155.5 16.4 282 205-529 15-303 (449)
33 1b89_A Protein (clathrin heavy 99.7 3.4E-16 1.2E-20 151.9 19.9 287 111-460 10-304 (449)
34 4g1t_A Interferon-induced prot 99.7 3.6E-14 1.2E-18 144.7 36.0 383 137-546 48-469 (472)
35 1xi4_A Clathrin heavy chain; a 99.7 5.4E-13 1.8E-17 144.1 42.4 297 192-537 984-1309(1630)
36 4g1t_A Interferon-induced prot 99.7 6.5E-14 2.2E-18 142.9 32.1 368 108-503 55-460 (472)
37 3uq3_A Heat shock protein STI1 99.7 4E-14 1.4E-18 131.4 25.5 222 301-536 8-235 (258)
38 3uq3_A Heat shock protein STI1 99.6 5.5E-14 1.9E-18 130.5 25.7 224 265-502 7-236 (258)
39 2pl2_A Hypothetical conserved 99.6 7.1E-14 2.4E-18 126.4 23.3 197 332-534 4-211 (217)
40 2pl2_A Hypothetical conserved 99.6 7.4E-14 2.5E-18 126.3 22.5 199 191-395 3-212 (217)
41 1ouv_A Conserved hypothetical 99.6 2.2E-12 7.7E-17 121.1 32.6 224 191-432 4-251 (273)
42 3e4b_A ALGK; tetratricopeptide 99.6 9.5E-14 3.2E-18 140.4 24.4 346 146-538 9-388 (452)
43 3e4b_A ALGK; tetratricopeptide 99.6 1.3E-13 4.3E-18 139.5 25.1 381 108-537 7-421 (452)
44 1ouv_A Conserved hypothetical 99.6 4E-12 1.4E-16 119.3 33.1 223 298-538 6-252 (273)
45 2h6f_A Protein farnesyltransfe 99.6 5.2E-13 1.8E-17 130.9 27.0 249 192-448 96-363 (382)
46 2h6f_A Protein farnesyltransfe 99.6 5.9E-13 2E-17 130.5 26.9 250 139-414 96-364 (382)
47 3u4t_A TPR repeat-containing p 99.6 4.7E-13 1.6E-17 125.5 25.1 198 195-396 5-207 (272)
48 2ho1_A Type 4 fimbrial biogene 99.6 1.3E-12 4.3E-17 121.0 27.3 198 336-537 40-238 (252)
49 2ho1_A Type 4 fimbrial biogene 99.6 1.6E-12 5.4E-17 120.4 27.5 201 140-362 37-238 (252)
50 2vq2_A PILW, putative fimbrial 99.6 2.7E-12 9.3E-17 116.2 28.0 202 333-537 8-211 (225)
51 3u4t_A TPR repeat-containing p 99.6 7.8E-13 2.7E-17 124.0 25.0 247 140-409 3-261 (272)
52 2vq2_A PILW, putative fimbrial 99.6 2.7E-12 9.2E-17 116.3 26.8 202 192-396 7-210 (225)
53 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.2E-13 7.6E-18 127.9 19.2 222 205-432 17-244 (275)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.4E-13 1.5E-17 125.8 20.7 221 301-531 46-269 (275)
55 2q7f_A YRRB protein; TPR, prot 99.5 7E-13 2.4E-17 121.9 21.5 201 192-397 22-222 (243)
56 2q7f_A YRRB protein; TPR, prot 99.5 8.1E-13 2.8E-17 121.5 21.6 194 303-501 28-221 (243)
57 4a1s_A PINS, partner of inscut 99.5 5.9E-13 2E-17 133.1 18.9 278 228-537 48-372 (411)
58 3sf4_A G-protein-signaling mod 99.5 1E-12 3.6E-17 130.8 19.7 273 192-465 8-334 (406)
59 4e6h_A MRNA 3'-END-processing 99.5 7.6E-10 2.6E-14 115.8 41.8 411 117-553 79-584 (679)
60 4a1s_A PINS, partner of inscut 99.5 7.4E-13 2.5E-17 132.3 18.0 235 194-429 49-329 (411)
61 3sf4_A G-protein-signaling mod 99.5 2.2E-12 7.5E-17 128.4 20.9 277 227-535 8-334 (406)
62 3ro2_A PINS homolog, G-protein 99.5 4.9E-12 1.7E-16 122.1 20.9 134 404-537 184-332 (338)
63 3ro2_A PINS homolog, G-protein 99.5 4.9E-12 1.7E-16 122.1 20.5 276 195-502 7-332 (338)
64 3ulq_A Response regulator aspa 99.4 2.8E-11 9.4E-16 119.7 24.2 230 304-536 109-367 (383)
65 3vtx_A MAMA; tetratricopeptide 99.4 4.4E-11 1.5E-15 104.7 22.9 165 333-501 5-169 (184)
66 2ond_A Cleavage stimulation fa 99.4 3.4E-10 1.1E-14 108.2 30.7 217 157-397 33-270 (308)
67 2ond_A Cleavage stimulation fa 99.4 3.6E-10 1.2E-14 108.0 30.7 185 350-537 81-270 (308)
68 3ulq_A Response regulator aspa 99.4 2.4E-11 8.4E-16 120.1 23.0 298 203-502 22-368 (383)
69 3vtx_A MAMA; tetratricopeptide 99.4 8.3E-11 2.8E-15 103.0 23.8 171 367-543 4-174 (184)
70 4abn_A Tetratricopeptide repea 99.4 2.5E-11 8.5E-16 123.4 21.5 212 279-496 84-315 (474)
71 4abn_A Tetratricopeptide repea 99.4 1.8E-11 6.2E-16 124.4 20.5 215 313-534 83-318 (474)
72 3nf1_A KLC 1, kinesin light ch 99.4 5.4E-12 1.9E-16 120.5 15.1 171 191-361 25-223 (311)
73 3nf1_A KLC 1, kinesin light ch 99.3 4.7E-11 1.6E-15 113.9 19.3 239 297-536 26-306 (311)
74 4e6h_A MRNA 3'-END-processing 99.3 9E-09 3.1E-13 107.7 37.7 401 153-560 63-558 (679)
75 3q15_A PSP28, response regulat 99.3 4.7E-10 1.6E-14 110.6 26.2 228 305-536 108-364 (378)
76 3q15_A PSP28, response regulat 99.3 7.6E-10 2.6E-14 109.1 26.7 306 192-501 9-364 (378)
77 1hz4_A MALT regulatory protein 99.3 2.1E-09 7.1E-14 105.7 29.7 199 303-501 98-321 (373)
78 1hz4_A MALT regulatory protein 99.3 1.6E-09 5.6E-14 106.5 28.1 290 269-558 20-351 (373)
79 3as5_A MAMA; tetratricopeptide 99.3 6.5E-10 2.2E-14 96.8 21.0 161 372-536 12-172 (186)
80 3as5_A MAMA; tetratricopeptide 99.3 7.4E-10 2.5E-14 96.5 21.1 165 334-502 9-173 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.3 2.4E-10 8.2E-15 121.0 20.3 169 189-361 5-173 (723)
82 4gyw_A UDP-N-acetylglucosamine 99.2 5.6E-10 1.9E-14 118.2 21.5 165 333-501 9-173 (723)
83 4i17_A Hypothetical protein; T 99.2 4.6E-09 1.6E-13 95.3 22.8 133 297-431 6-145 (228)
84 4i17_A Hypothetical protein; T 99.2 5.1E-09 1.7E-13 95.0 21.5 202 331-546 5-216 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 5E-10 1.7E-14 105.0 15.0 228 309-537 12-281 (283)
86 3edt_B KLC 2, kinesin light ch 99.1 6.5E-10 2.2E-14 104.2 14.5 227 275-502 13-281 (283)
87 3mv2_B Coatomer subunit epsilo 99.1 2.7E-08 9.2E-13 92.6 23.4 244 200-467 20-282 (310)
88 1qqe_A Vesicular transport pro 99.1 1.7E-08 5.9E-13 95.4 21.0 68 208-290 32-104 (292)
89 3mv2_B Coatomer subunit epsilo 99.0 4.6E-08 1.6E-12 91.0 21.8 179 352-537 85-282 (310)
90 2fo7_A Synthetic consensus TPR 99.0 2.8E-08 9.5E-13 81.1 18.4 130 405-537 3-132 (136)
91 1qqe_A Vesicular transport pro 99.0 2.3E-08 8E-13 94.5 18.5 205 313-534 32-266 (292)
92 2uy1_A Cleavage stimulation fa 99.0 4.7E-06 1.6E-10 84.5 36.5 345 154-536 28-412 (493)
93 2fo7_A Synthetic consensus TPR 99.0 4.6E-08 1.6E-12 79.7 18.1 127 372-501 5-131 (136)
94 3qky_A Outer membrane assembly 99.0 4E-08 1.4E-12 91.1 19.6 184 297-502 14-224 (261)
95 3dra_A Protein farnesyltransfe 99.0 6.9E-07 2.4E-11 83.9 27.7 226 201-431 41-286 (306)
96 3qky_A Outer membrane assembly 99.0 2.6E-08 8.8E-13 92.4 17.9 213 189-421 11-250 (261)
97 3dra_A Protein farnesyltransfe 98.9 7.4E-07 2.5E-11 83.7 26.9 221 154-397 47-287 (306)
98 3urz_A Uncharacterized protein 98.9 5.6E-08 1.9E-12 86.7 18.5 130 374-509 60-191 (208)
99 3rjv_A Putative SEL1 repeat pr 98.9 1.7E-07 5.9E-12 83.7 21.3 163 192-363 17-198 (212)
100 3urz_A Uncharacterized protein 98.9 4.9E-08 1.7E-12 87.1 17.4 165 139-326 3-185 (208)
101 2pzi_A Probable serine/threoni 98.9 2.3E-08 7.8E-13 106.3 16.6 153 204-361 402-562 (681)
102 2pzi_A Probable serine/threoni 98.9 1.8E-08 6.1E-13 107.1 15.3 173 344-523 402-583 (681)
103 3rjv_A Putative SEL1 repeat pr 98.9 2E-07 6.8E-12 83.3 19.7 176 211-398 4-198 (212)
104 2r5s_A Uncharacterized protein 98.9 4E-08 1.4E-12 85.0 13.8 159 144-324 10-170 (176)
105 2r5s_A Uncharacterized protein 98.8 3.8E-08 1.3E-12 85.1 12.9 161 195-359 8-170 (176)
106 2yhc_A BAMD, UPF0169 lipoprote 98.8 5.9E-07 2E-11 81.1 20.8 203 298-538 4-214 (225)
107 3qou_A Protein YBBN; thioredox 98.8 1.7E-07 5.7E-12 88.3 17.5 164 139-324 116-281 (287)
108 2vsy_A XCC0866; transferase, g 98.8 1.7E-07 6E-12 97.6 19.4 155 346-504 2-159 (568)
109 2yhc_A BAMD, UPF0169 lipoprote 98.8 5.8E-07 2E-11 81.1 20.4 192 332-562 3-203 (225)
110 3qou_A Protein YBBN; thioredox 98.8 1.4E-07 4.9E-12 88.7 16.7 161 370-534 119-281 (287)
111 2ifu_A Gamma-SNAP; membrane fu 98.8 9.1E-08 3.1E-12 91.1 15.4 157 370-529 78-253 (307)
112 4ga2_A E3 SUMO-protein ligase 98.8 2.5E-08 8.6E-13 83.7 10.1 141 378-522 7-148 (150)
113 2vsy_A XCC0866; transferase, g 98.8 2E-07 6.9E-12 97.1 19.2 164 311-479 2-168 (568)
114 4ga2_A E3 SUMO-protein ligase 98.8 2.7E-08 9.3E-13 83.5 10.2 85 195-281 33-117 (150)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 1.6E-07 5.3E-12 89.5 15.7 198 206-430 4-222 (307)
116 3q7a_A Farnesyltransferase alp 98.7 8.1E-06 2.8E-10 77.5 26.7 178 201-383 62-257 (349)
117 2uy1_A Cleavage stimulation fa 98.7 3E-05 1E-09 78.6 32.1 347 118-501 28-412 (493)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.6E-06 5.6E-11 77.2 20.2 127 370-502 8-150 (213)
119 3q7a_A Farnesyltransferase alp 98.7 1E-05 3.4E-10 76.9 26.3 175 151-348 65-257 (349)
120 3u3w_A Transcriptional activat 98.7 6.3E-06 2.2E-10 77.6 23.4 162 339-500 81-264 (293)
121 3u3w_A Transcriptional activat 98.7 3.8E-06 1.3E-10 79.1 21.8 164 373-536 80-265 (293)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.3E-06 7.8E-11 76.2 18.9 129 334-467 7-150 (213)
123 1a17_A Serine/threonine protei 98.6 2.4E-06 8.1E-11 72.5 17.2 129 404-535 14-144 (166)
124 2qfc_A PLCR protein; TPR, HTH, 98.6 1.3E-05 4.6E-10 75.4 22.6 165 335-500 77-264 (293)
125 4gco_A Protein STI-1; structur 98.6 3.1E-06 1.1E-10 68.3 15.6 94 406-501 16-109 (126)
126 2qfc_A PLCR protein; TPR, HTH, 98.5 1.1E-05 3.7E-10 76.0 21.5 166 370-535 77-264 (293)
127 1a17_A Serine/threonine protei 98.5 4.4E-06 1.5E-10 70.8 16.9 126 371-499 16-143 (166)
128 3gyz_A Chaperone protein IPGC; 98.5 9.4E-07 3.2E-11 73.8 12.2 100 191-292 34-133 (151)
129 4gco_A Protein STI-1; structur 98.5 3.5E-06 1.2E-10 68.0 15.0 94 336-431 16-109 (126)
130 3gw4_A Uncharacterized protein 98.5 1.5E-06 5.1E-11 76.7 13.5 84 345-429 4-92 (203)
131 1na0_A Designed protein CTPR3; 98.5 7E-06 2.4E-10 65.4 16.5 95 405-501 11-105 (125)
132 2c2l_A CHIP, carboxy terminus 98.5 8.7E-07 3E-11 83.0 12.4 195 332-537 3-199 (281)
133 4f3v_A ESX-1 secretion system 98.5 4.3E-06 1.5E-10 76.7 16.4 187 205-397 18-237 (282)
134 2lni_A Stress-induced-phosphop 98.5 4.6E-06 1.6E-10 67.6 15.1 118 402-522 15-132 (133)
135 3gw4_A Uncharacterized protein 98.5 2.1E-06 7.2E-11 75.6 13.3 120 309-429 3-133 (203)
136 1na0_A Designed protein CTPR3; 98.5 9.8E-06 3.3E-10 64.6 16.2 95 371-467 12-106 (125)
137 2vyi_A SGTA protein; chaperone 98.5 5.8E-06 2E-10 66.6 15.0 117 404-523 13-129 (131)
138 2lni_A Stress-induced-phosphop 98.5 4.4E-06 1.5E-10 67.7 14.2 121 189-312 12-132 (133)
139 2c2l_A CHIP, carboxy terminus 98.4 6.9E-07 2.4E-11 83.7 10.3 98 139-256 3-100 (281)
140 3gyz_A Chaperone protein IPGC; 98.4 6.3E-06 2.2E-10 68.7 15.0 97 404-502 37-133 (151)
141 1p5q_A FKBP52, FK506-binding p 98.4 6.7E-06 2.3E-10 79.1 17.2 130 404-535 148-292 (336)
142 2vyi_A SGTA protein; chaperone 98.4 7.1E-06 2.4E-10 66.0 14.9 120 192-314 11-130 (131)
143 4f3v_A ESX-1 secretion system 98.4 5.8E-06 2E-10 75.9 15.1 202 116-328 18-238 (282)
144 1p5q_A FKBP52, FK506-binding p 98.4 7.3E-06 2.5E-10 78.8 16.1 146 332-500 146-292 (336)
145 2e2e_A Formate-dependent nitri 98.4 3.4E-06 1.2E-10 72.7 12.5 120 152-292 22-144 (177)
146 2e2e_A Formate-dependent nitri 98.4 3.1E-06 1.1E-10 72.9 12.1 119 381-502 23-144 (177)
147 3dss_A Geranylgeranyl transfer 98.4 0.00022 7.4E-09 67.4 25.3 138 275-416 41-192 (331)
148 2vgx_A Chaperone SYCD; alterna 98.4 2E-06 6.9E-11 71.7 10.2 99 192-292 20-118 (148)
149 2vgx_A Chaperone SYCD; alterna 98.4 2.7E-06 9.3E-11 70.9 10.8 96 404-501 22-117 (148)
150 3dss_A Geranylgeranyl transfer 98.3 0.00069 2.4E-08 63.9 28.0 166 204-374 40-233 (331)
151 2fbn_A 70 kDa peptidylprolyl i 98.3 1.3E-06 4.5E-11 76.9 8.6 125 200-326 11-150 (198)
152 3upv_A Heat shock protein STI1 98.3 2.7E-05 9.1E-10 62.6 14.6 94 406-501 7-100 (126)
153 3upv_A Heat shock protein STI1 98.3 1.5E-05 5.1E-10 64.1 12.9 94 196-291 7-100 (126)
154 2fbn_A 70 kDa peptidylprolyl i 98.3 2.6E-05 9E-10 68.4 15.3 131 405-537 40-186 (198)
155 4gcn_A Protein STI-1; structur 98.2 2.3E-05 7.8E-10 63.2 13.6 95 441-536 11-111 (127)
156 1elw_A TPR1-domain of HOP; HOP 98.2 7.2E-05 2.4E-09 58.7 16.4 94 406-501 7-100 (118)
157 1elw_A TPR1-domain of HOP; HOP 98.2 6.3E-05 2.2E-09 59.0 15.9 94 336-431 7-100 (118)
158 4gcn_A Protein STI-1; structur 98.2 3.1E-05 1.1E-09 62.4 13.8 105 405-512 10-120 (127)
159 2kck_A TPR repeat; tetratricop 98.2 2E-05 6.9E-10 61.3 12.2 101 191-293 4-107 (112)
160 4b4t_Q 26S proteasome regulato 98.2 0.00013 4.3E-09 72.8 20.4 196 271-466 12-244 (434)
161 3q49_B STIP1 homology and U bo 98.2 7.6E-05 2.6E-09 60.7 15.7 98 402-501 8-105 (137)
162 2xcb_A PCRH, regulatory protei 98.2 3E-05 1E-09 63.9 13.1 94 406-501 21-114 (142)
163 3sz7_A HSC70 cochaperone (SGT) 98.2 4.3E-05 1.5E-09 64.7 14.5 98 403-502 11-108 (164)
164 3q49_B STIP1 homology and U bo 98.2 3.9E-05 1.3E-09 62.5 13.7 97 192-290 8-104 (137)
165 3sz7_A HSC70 cochaperone (SGT) 98.2 4.1E-05 1.4E-09 64.8 14.2 97 140-256 11-107 (164)
166 2xcb_A PCRH, regulatory protei 98.2 3.6E-05 1.2E-09 63.4 13.4 98 438-537 18-115 (142)
167 1elr_A TPR2A-domain of HOP; HO 98.2 2.4E-05 8.3E-10 62.8 12.1 95 406-501 7-107 (131)
168 4b4t_Q 26S proteasome regulato 98.2 0.00019 6.4E-09 71.5 21.1 197 305-501 11-244 (434)
169 1elr_A TPR2A-domain of HOP; HO 98.1 2.8E-05 9.4E-10 62.5 11.5 95 196-291 7-107 (131)
170 2dba_A Smooth muscle cell asso 98.1 0.00017 5.9E-09 59.3 16.7 97 403-502 28-128 (148)
171 2dba_A Smooth muscle cell asso 98.1 0.00011 3.9E-09 60.4 15.4 100 190-292 25-128 (148)
172 2kck_A TPR repeat; tetratricop 98.1 3.2E-05 1.1E-09 60.1 11.4 96 440-537 8-106 (112)
173 1hxi_A PEX5, peroxisome target 98.1 2.5E-05 8.4E-10 62.4 10.5 91 199-291 23-113 (121)
174 3ro3_A PINS homolog, G-protein 98.1 2.7E-05 9.3E-10 65.2 10.8 132 405-536 11-157 (164)
175 1hxi_A PEX5, peroxisome target 98.0 5.5E-05 1.9E-09 60.3 11.6 85 448-534 27-111 (121)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.9E-05 2.7E-09 74.9 14.7 137 368-527 268-404 (457)
177 1wao_1 Serine/threonine protei 98.0 5.1E-05 1.7E-09 76.7 12.7 119 341-462 14-134 (477)
178 3ro3_A PINS homolog, G-protein 98.0 5.2E-05 1.8E-09 63.4 10.7 97 405-501 51-157 (164)
179 2xev_A YBGF; tetratricopeptide 97.9 0.00043 1.5E-08 55.4 15.4 60 441-501 42-104 (129)
180 2xev_A YBGF; tetratricopeptide 97.9 0.00026 8.9E-09 56.7 14.0 62 194-256 40-104 (129)
181 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00011 3.7E-09 73.9 14.1 158 312-493 248-405 (457)
182 1ihg_A Cyclophilin 40; ppiase 97.9 0.00013 4.6E-09 70.8 13.8 139 369-529 224-362 (370)
183 1dce_A Protein (RAB geranylger 97.9 0.00066 2.3E-08 69.9 19.4 174 207-385 43-243 (567)
184 1wao_1 Serine/threonine protei 97.9 4E-05 1.4E-09 77.5 9.8 120 376-498 14-135 (477)
185 1ihg_A Cyclophilin 40; ppiase 97.8 0.00022 7.5E-09 69.3 14.2 140 333-494 223-362 (370)
186 3rkv_A Putative peptidylprolyl 97.8 0.00025 8.5E-09 59.7 12.9 63 439-502 64-126 (162)
187 1dce_A Protein (RAB geranylger 97.8 0.0013 4.4E-08 67.7 20.2 175 154-351 43-244 (567)
188 3k9i_A BH0479 protein; putativ 97.8 4.6E-05 1.6E-09 60.3 7.4 61 405-466 29-89 (117)
189 3k9i_A BH0479 protein; putativ 97.8 6.5E-05 2.2E-09 59.4 7.4 86 206-292 3-90 (117)
190 3rkv_A Putative peptidylprolyl 97.7 0.00044 1.5E-08 58.2 13.0 102 440-544 13-131 (162)
191 2hr2_A Hypothetical protein; a 97.7 0.00087 3E-08 55.4 12.9 108 441-550 14-149 (159)
192 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00013 4.4E-09 70.1 9.2 148 298-466 179-327 (338)
193 2hr2_A Hypothetical protein; a 97.7 0.00086 2.9E-08 55.4 12.7 97 406-502 14-131 (159)
194 1klx_A Cysteine rich protein B 97.6 0.001 3.5E-08 54.2 13.3 110 208-328 10-127 (138)
195 1klx_A Cysteine rich protein B 97.6 0.0013 4.3E-08 53.7 13.8 111 242-363 9-127 (138)
196 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00014 4.8E-09 69.8 8.9 149 368-537 179-328 (338)
197 3n71_A Histone lysine methyltr 97.6 0.00033 1.1E-08 70.3 10.9 125 413-537 319-464 (490)
198 2kat_A Uncharacterized protein 97.5 0.00056 1.9E-08 53.6 9.5 67 189-256 15-81 (115)
199 2l6j_A TPR repeat-containing p 97.5 0.00011 3.7E-09 57.1 4.9 89 438-529 4-99 (111)
200 2kat_A Uncharacterized protein 97.5 0.00073 2.5E-08 52.9 9.7 78 422-501 4-81 (115)
201 2l6j_A TPR repeat-containing p 97.4 0.00022 7.7E-09 55.3 5.8 90 195-286 6-101 (111)
202 3n71_A Histone lysine methyltr 97.4 0.00077 2.6E-08 67.7 11.0 125 378-502 319-464 (490)
203 1na3_A Designed protein CTPR2; 97.3 0.0022 7.6E-08 47.3 10.5 81 193-275 9-89 (91)
204 1na3_A Designed protein CTPR2; 97.3 0.0032 1.1E-07 46.3 11.3 78 440-519 11-88 (91)
205 1zu2_A Mitochondrial import re 97.2 0.00084 2.9E-08 55.4 7.4 59 454-515 62-131 (158)
206 3ma5_A Tetratricopeptide repea 97.2 0.0012 4E-08 50.3 8.0 67 189-256 3-69 (100)
207 1zu2_A Mitochondrial import re 97.1 0.0017 5.7E-08 53.6 7.9 108 345-481 14-132 (158)
208 3ma5_A Tetratricopeptide repea 96.9 0.0049 1.7E-07 46.7 8.9 67 137-222 4-70 (100)
209 3mkq_A Coatomer beta'-subunit; 96.8 0.091 3.1E-06 56.7 21.1 126 239-397 610-736 (814)
210 3mkq_A Coatomer beta'-subunit; 96.6 0.1 3.5E-06 56.3 20.0 99 379-498 663-761 (814)
211 3ly7_A Transcriptional activat 96.6 0.058 2E-06 51.1 15.0 72 437-512 276-347 (372)
212 3ly7_A Transcriptional activat 96.5 0.22 7.4E-06 47.2 18.5 72 296-371 275-346 (372)
213 2kc7_A BFR218_protein; tetratr 96.4 0.013 4.5E-07 43.9 7.9 56 446-502 8-64 (99)
214 3qww_A SET and MYND domain-con 96.3 0.0094 3.2E-07 58.8 8.6 85 451-535 311-409 (433)
215 3qwp_A SET and MYND domain-con 96.2 0.024 8.3E-07 55.9 10.7 88 448-535 297-398 (429)
216 2kc7_A BFR218_protein; tetratr 96.2 0.012 4.2E-07 44.1 6.8 59 199-258 6-65 (99)
217 3bee_A Putative YFRE protein; 96.1 0.046 1.6E-06 40.6 9.4 68 190-258 3-73 (93)
218 3bee_A Putative YFRE protein; 96.0 0.057 1.9E-06 40.1 9.6 70 137-225 3-75 (93)
219 3qww_A SET and MYND domain-con 96.0 0.029 9.8E-07 55.3 9.9 86 416-501 311-410 (433)
220 3qwp_A SET and MYND domain-con 95.9 0.059 2E-06 53.1 12.1 92 410-501 294-399 (429)
221 1wy6_A Hypothetical protein ST 95.8 0.51 1.7E-05 37.0 15.1 61 407-468 95-155 (172)
222 1pc2_A Mitochondria fission pr 95.4 0.091 3.1E-06 42.7 8.9 83 418-502 13-100 (152)
223 3mkq_B Coatomer subunit alpha; 95.2 1.2 4E-05 37.2 17.3 45 309-359 16-60 (177)
224 2v5f_A Prolyl 4-hydroxylase su 95.1 0.16 5.6E-06 38.4 9.5 75 138-224 3-77 (104)
225 1pc2_A Mitochondria fission pr 95.0 0.19 6.5E-06 40.8 9.9 81 385-467 15-100 (152)
226 3u64_A Protein TP_0956; tetrat 94.8 0.31 1.1E-05 44.3 11.7 78 192-269 198-283 (301)
227 2v5f_A Prolyl 4-hydroxylase su 94.8 0.33 1.1E-05 36.6 10.5 27 440-466 48-74 (104)
228 3u64_A Protein TP_0956; tetrat 94.6 0.37 1.2E-05 43.8 11.5 107 419-535 179-296 (301)
229 3mkq_B Coatomer subunit alpha; 94.5 1.8 6.1E-05 36.1 17.1 100 379-499 16-115 (177)
230 4h7y_A Dual specificity protei 94.2 0.92 3.1E-05 36.4 11.6 63 382-446 74-136 (161)
231 1wy6_A Hypothetical protein ST 94.0 1.8 6E-05 34.1 14.6 140 379-540 18-157 (172)
232 4h7y_A Dual specificity protei 93.8 0.46 1.6E-05 38.2 9.2 105 189-295 9-126 (161)
233 4ady_A RPN2, 26S proteasome re 93.6 9.4 0.00032 41.0 25.7 150 343-500 500-656 (963)
234 4fhn_B Nucleoporin NUP120; pro 93.3 3.9 0.00013 45.8 19.5 47 116-168 824-870 (1139)
235 1nzn_A CGI-135 protein, fissio 93.0 0.71 2.4E-05 36.0 9.1 22 480-501 81-102 (126)
236 4fhn_B Nucleoporin NUP120; pro 93.0 2.9 9.9E-05 46.9 17.8 81 300-382 901-985 (1139)
237 4b4t_P 26S proteasome regulato 92.6 8.5 0.00029 37.8 19.0 171 191-361 54-246 (445)
238 1nzn_A CGI-135 protein, fissio 91.9 0.87 3E-05 35.5 8.3 82 384-467 17-103 (126)
239 2ff4_A Probable regulatory pro 91.2 0.98 3.4E-05 43.6 10.0 55 479-534 177-231 (388)
240 4ady_A RPN2, 26S proteasome re 91.0 19 0.00066 38.7 27.4 151 274-431 501-657 (963)
241 4gns_B Protein CSD3, chitin bi 90.3 1.5 5.3E-05 45.9 10.9 127 372-499 252-397 (754)
242 4b4t_P 26S proteasome regulato 90.2 15 0.00051 36.1 20.7 51 242-292 30-85 (445)
243 4gns_B Protein CSD3, chitin bi 89.8 1.6 5.4E-05 45.8 10.6 125 337-464 252-397 (754)
244 3lvg_A Clathrin heavy chain 1; 89.3 1.8E-05 6.2E-10 76.2 -24.3 192 265-486 85-276 (624)
245 2ff4_A Probable regulatory pro 89.3 2.4 8.1E-05 40.9 10.8 75 196-271 174-253 (388)
246 1v54_E Cytochrome C oxidase po 88.2 3.1 0.00011 30.7 7.9 47 421-467 28-74 (109)
247 2wpv_A GET4, UPF0363 protein Y 86.3 20 0.00069 33.0 17.8 165 232-430 37-215 (312)
248 1v54_E Cytochrome C oxidase po 85.5 9.2 0.00031 28.2 9.8 62 453-515 25-86 (109)
249 3o48_A Mitochondria fission 1 84.5 8.2 0.00028 30.2 9.2 66 401-466 38-106 (134)
250 2y69_E Cytochrome C oxidase su 83.0 6.6 0.00022 30.7 7.9 59 421-480 71-129 (152)
251 2y69_E Cytochrome C oxidase su 82.7 15 0.00052 28.7 9.8 61 454-515 69-129 (152)
252 3o48_A Mitochondria fission 1 82.5 16 0.00054 28.6 10.2 69 434-502 36-107 (134)
253 3ffl_A Anaphase-promoting comp 81.9 13 0.00046 30.3 9.9 122 143-291 23-150 (167)
254 1y8m_A FIS1; mitochondria, unk 81.0 19 0.00065 28.6 11.3 21 446-466 85-105 (144)
255 2wpv_A GET4, UPF0363 protein Y 80.8 34 0.0012 31.4 20.5 81 401-500 132-215 (312)
256 3ffl_A Anaphase-promoting comp 80.1 11 0.00037 30.9 8.8 28 402-429 121-148 (167)
257 4b4t_R RPN7, 26S proteasome re 76.7 19 0.00064 35.1 11.3 95 265-361 133-236 (429)
258 3txn_A 26S proteasome regulato 75.6 58 0.002 31.1 22.6 132 228-360 19-166 (394)
259 4b4t_R RPN7, 26S proteasome re 75.4 19 0.00065 35.0 11.0 61 195-255 133-195 (429)
260 3lpz_A GET4 (YOR164C homolog); 75.3 52 0.0018 30.5 22.3 82 400-500 133-214 (336)
261 3lvg_A Clathrin heavy chain 1; 75.1 0.005 1.7E-07 59.7 -14.0 246 191-458 52-324 (624)
262 1zbp_A Hypothetical protein VP 75.0 10 0.00034 33.9 7.8 114 411-537 5-129 (273)
263 3esl_A Checkpoint serine/threo 74.6 25 0.00087 29.8 9.8 56 451-506 92-148 (202)
264 3eiq_C Programmed cell death p 74.1 29 0.00098 32.7 11.2 25 301-325 57-81 (358)
265 1zbp_A Hypothetical protein VP 73.9 9.9 0.00034 34.0 7.5 57 148-223 5-61 (273)
266 2p58_C Putative type III secre 73.6 24 0.00082 25.9 8.0 13 414-426 51-63 (116)
267 1y8m_A FIS1; mitochondria, unk 72.2 35 0.0012 27.1 12.0 68 435-502 36-106 (144)
268 2uwj_G Type III export protein 71.7 27 0.00093 25.6 7.8 18 345-362 80-97 (115)
269 3lpz_A GET4 (YOR164C homolog); 71.4 65 0.0022 29.9 19.8 25 262-286 135-159 (336)
270 2p58_C Putative type III secre 71.3 28 0.00096 25.6 8.8 49 308-362 50-98 (116)
271 3txn_A 26S proteasome regulato 71.0 74 0.0025 30.4 23.2 233 194-430 20-282 (394)
272 2uwj_G Type III export protein 69.7 23 0.00078 26.0 7.1 13 413-425 49-61 (115)
273 1qsa_A Protein (soluble lytic 64.7 1.3E+02 0.0044 30.8 35.5 46 481-529 389-434 (618)
274 4a1g_A Mitotic checkpoint seri 63.6 53 0.0018 26.4 9.1 50 457-506 84-134 (152)
275 2wvi_A Mitotic checkpoint seri 63.0 25 0.00085 28.7 7.2 55 210-264 77-132 (164)
276 3eiq_C Programmed cell death p 62.7 94 0.0032 29.2 12.1 24 407-430 221-244 (358)
277 2zu6_B Programmed cell death p 62.3 35 0.0012 31.4 8.9 25 301-325 6-30 (307)
278 1wdy_A 2-5A-dependent ribonucl 61.7 14 0.00047 33.1 6.4 19 199-217 8-26 (285)
279 1qsa_A Protein (soluble lytic 61.4 1.5E+02 0.005 30.3 37.0 116 378-497 295-437 (618)
280 2wvi_A Mitotic checkpoint seri 57.2 77 0.0026 25.8 9.2 54 456-509 78-132 (164)
281 1k1a_A B-cell lymphoma 3-encod 50.4 31 0.0011 29.8 6.6 24 271-294 14-37 (241)
282 2d2s_A Exocyst complex compone 48.6 98 0.0034 27.0 9.2 28 332-359 90-117 (235)
283 1k1a_A B-cell lymphoma 3-encod 48.1 44 0.0015 28.7 7.2 21 518-542 190-210 (241)
284 2nsz_A Programmed cell death p 48.0 77 0.0026 24.6 7.6 66 440-506 9-76 (129)
285 2d2s_A Exocyst complex compone 46.1 1.4E+02 0.0048 26.0 9.8 89 409-500 24-118 (235)
286 2zu6_B Programmed cell death p 45.2 1.5E+02 0.005 27.1 10.2 26 265-290 5-30 (307)
287 2xig_A Ferric uptake regulatio 43.2 97 0.0033 24.7 7.8 60 218-278 17-76 (150)
288 2ion_A PDCD4, programmed cell 43.0 1.2E+02 0.0042 24.2 8.3 24 407-430 13-36 (152)
289 3esl_A Checkpoint serine/threo 42.4 1.6E+02 0.0053 25.0 14.2 57 241-297 92-149 (202)
290 2qx5_A Nucleoporin NIC96; mRNA 42.0 3.1E+02 0.01 28.2 16.7 26 143-168 155-180 (661)
291 3mv2_A Coatomer subunit alpha; 41.7 2.1E+02 0.0072 26.2 12.1 19 413-431 124-142 (325)
292 4gq2_M Nucleoporin NUP120; bet 40.6 2.8E+02 0.0095 30.1 13.2 49 299-347 898-950 (950)
293 3jxi_A Vanilloid receptor-rela 40.5 13 0.00043 33.0 2.3 56 200-255 9-73 (260)
294 4aez_C MAD3, mitotic spindle c 39.8 81 0.0028 27.2 7.0 83 454-541 100-183 (223)
295 3c1d_A Protein ORAA, regulator 39.2 1.5E+02 0.0051 23.8 10.3 49 280-330 47-95 (159)
296 1mzb_A Ferric uptake regulatio 39.2 86 0.0029 24.4 6.8 59 219-278 9-68 (136)
297 2ion_A PDCD4, programmed cell 39.0 72 0.0024 25.6 6.3 70 440-510 11-82 (152)
298 3mv2_A Coatomer subunit alpha; 38.5 2.4E+02 0.0081 25.9 16.7 50 280-329 187-238 (325)
299 2nsz_A Programmed cell death p 38.3 1.4E+02 0.0047 23.1 9.6 65 406-471 10-76 (129)
300 3ltm_A Alpha-REP4; protein eng 38.0 1.7E+02 0.006 24.3 19.0 79 192-278 32-110 (211)
301 2fe3_A Peroxide operon regulat 37.5 85 0.0029 24.8 6.6 58 219-277 13-70 (145)
302 1wdy_A 2-5A-dependent ribonucl 37.1 34 0.0012 30.4 4.7 48 450-497 191-240 (285)
303 2xig_A Ferric uptake regulatio 35.5 1.7E+02 0.0057 23.3 8.2 58 289-347 18-75 (150)
304 4g8k_A 2-5A-dependent ribonucl 35.2 69 0.0023 29.5 6.6 20 198-217 27-46 (337)
305 2w57_A Ferric uptake regulatio 34.9 98 0.0034 24.7 6.6 61 218-279 7-68 (150)
306 2ijq_A Hypothetical protein; s 34.2 1.9E+02 0.0064 23.5 8.4 53 484-536 43-103 (161)
307 4b4t_S RPN3, 26S proteasome re 34.1 3.6E+02 0.012 26.7 12.2 65 228-292 231-299 (523)
308 3eyy_A Putative iron uptake re 32.6 82 0.0028 24.9 5.7 57 219-277 10-66 (145)
309 3t8k_A Uncharacterized protein 32.2 92 0.0031 25.7 6.3 29 304-332 41-69 (186)
310 4gq2_M Nucleoporin NUP120; bet 31.5 3.3E+02 0.011 29.5 11.9 47 115-167 821-867 (950)
311 1ug3_A EIF4GI, eukaryotic prot 30.9 3.2E+02 0.011 25.2 10.7 63 196-259 14-77 (339)
312 3pvs_A Replication-associated 30.6 3.8E+02 0.013 25.9 15.3 89 137-227 191-289 (447)
313 3pvs_A Replication-associated 29.8 3.9E+02 0.013 25.8 12.9 21 347-367 269-289 (447)
314 2fe3_A Peroxide operon regulat 29.2 1.9E+02 0.0064 22.7 7.3 35 310-344 33-67 (145)
315 3mwm_A ZUR, putative metal upt 28.9 82 0.0028 24.7 5.1 47 232-278 17-63 (139)
316 3kae_A CDC27, possible protein 28.8 2.4E+02 0.0082 23.2 7.5 23 342-364 71-93 (242)
317 4b4t_S RPN3, 26S proteasome re 28.4 4.5E+02 0.015 26.0 12.7 66 192-257 230-299 (523)
318 4ets_A Ferric uptake regulatio 28.2 1E+02 0.0036 24.9 5.7 69 210-279 14-85 (162)
319 3d5l_A Regulatory protein RECX 27.8 2.9E+02 0.0099 23.6 10.1 51 280-331 93-143 (221)
320 3kae_A CDC27, possible protein 27.3 2.5E+02 0.0085 23.1 7.3 24 202-225 71-94 (242)
321 3t8k_A Uncharacterized protein 26.5 1.1E+02 0.0039 25.1 5.9 24 273-296 45-68 (186)
322 1mzb_A Ferric uptake regulatio 26.4 1.8E+02 0.0062 22.5 6.7 58 289-347 9-67 (136)
323 2fu4_A Ferric uptake regulatio 25.9 1.6E+02 0.0055 20.1 6.6 58 219-277 8-66 (83)
324 3jxi_A Vanilloid receptor-rela 25.8 19 0.00064 31.9 0.7 21 274-294 13-33 (260)
325 3eu9_A Huntingtin-interacting 25.7 28 0.00095 30.0 1.9 20 516-535 215-234 (240)
326 3aji_A 26S proteasome non-ATPa 25.6 1.2E+02 0.0041 25.7 6.1 20 200-219 10-29 (231)
327 3eu9_A Huntingtin-interacting 25.3 58 0.002 27.8 4.0 14 150-163 16-29 (240)
328 2f6m_A Suppressor protein STP2 25.2 91 0.0031 20.8 3.7 45 196-241 5-49 (65)
329 3eyy_A Putative iron uptake re 24.7 1.6E+02 0.0054 23.2 6.1 34 314-347 33-66 (145)
330 2ijq_A Hypothetical protein; s 24.5 2.8E+02 0.0096 22.4 8.6 52 415-466 44-103 (161)
331 2rfa_A Transient receptor pote 24.3 1.2E+02 0.004 25.7 5.8 19 200-218 41-59 (232)
332 3f3f_C Nucleoporin NUP85; stru 23.7 1.6E+02 0.0056 29.4 6.9 74 486-561 494-567 (570)
333 3kea_A K1L; tropism, ANK repea 23.4 78 0.0027 28.3 4.6 175 248-437 44-222 (285)
334 2qx5_A Nucleoporin NIC96; mRNA 23.4 5.4E+02 0.019 26.4 11.1 22 200-221 450-471 (661)
335 4fke_A Aminopeptidase N; zinc 23.2 7.2E+02 0.025 26.7 15.6 160 372-537 690-860 (909)
336 3ltj_A Alpharep-4; protein eng 23.0 3.1E+02 0.011 22.4 20.4 192 171-384 8-199 (201)
337 2w57_A Ferric uptake regulatio 22.5 1.9E+02 0.0066 22.9 6.2 58 289-347 8-66 (150)
338 4ets_A Ferric uptake regulatio 22.3 1.8E+02 0.0063 23.4 6.1 58 360-418 25-84 (162)
339 2fu4_A Ferric uptake regulatio 22.0 2E+02 0.0067 19.7 7.0 30 315-344 34-63 (83)
340 4a1g_A Mitotic checkpoint seri 21.8 3.1E+02 0.011 21.9 14.7 50 247-296 84-134 (152)
341 3ljn_A Hypothetical protein; a 21.8 87 0.003 29.1 4.7 217 267-498 21-266 (364)
342 3hra_A Ankyrin repeat family p 21.7 64 0.0022 26.7 3.4 12 275-286 14-25 (201)
343 3hra_A Ankyrin repeat family p 21.3 57 0.0019 27.0 3.0 15 203-217 12-26 (201)
344 2o03_A Probable zinc uptake re 21.3 1.3E+02 0.0044 23.2 4.8 31 244-274 26-56 (131)
345 4fke_A Aminopeptidase N; zinc 21.0 7.9E+02 0.027 26.4 16.6 88 234-326 692-786 (909)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.4e-35 Score=307.23 Aligned_cols=413 Identities=9% Similarity=-0.024 Sum_probs=222.1
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
..+++..|+.+|+.+....| +..++..++.++.+.|++++|..+++++... +.++.+
T Consensus 96 ~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~~ 152 (597)
T 2xpi_A 96 MQQQYKCAAFVGEKVLDITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--------------------NRSSAC 152 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--------------------GTCHHH
T ss_pred HccCchHHHHHHHHHHhhCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--------------------ccchhH
Confidence 34577777777777765432 4566677777777777777777777766432 224555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDY---------------GFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS 260 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~ 260 (565)
++.++.+|.+.|++++|+++|+++... +...+..+|+.++.+|.+.|++++|+++|++|.+.+..
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 232 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK 232 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch
Confidence 666666666666666666666532211 11224556666666666666666666666666543211
Q ss_pred CCHHHHHHH--------------------------------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008454 261 PNVYTLNMV--------------------------------------MHAFCKLGIIERAVEVFKNMESMGFIPSVTTYN 302 (565)
Q Consensus 261 p~~~~~~~l--------------------------------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 302 (565)
+...+..+ +..|.+.|++++|.++|+++.+. .++..+|+
T Consensus 233 -~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 309 (597)
T 2xpi_A 233 -CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLL 309 (597)
T ss_dssp -CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHH
T ss_pred -hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHH
Confidence 22222211 22333445555555555555443 24555555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008454 303 TLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVG 382 (565)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 382 (565)
.++.+|.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++..|.+.|
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhc
Confidence 555555555555555555555554432 244455555555555555555555555555432 334455555555555555
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008454 383 NSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYK 462 (565)
Q Consensus 383 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 462 (565)
++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+.. +..+|+.++.+|.+.|++++|.++|+
T Consensus 388 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555554322 14455555555555555555555555555544322 44555555555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 463 SMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK----CMAPD--SIILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 463 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+
T Consensus 466 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 466 SSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555542 334555555555555555555555555555443 33444 44555555555555555555555555554
Q ss_pred CCCCCCHhhHHHHHhhcccCCCcc
Q 008454 537 RGLLPKGFDKLRTINCAPENGEKE 560 (565)
Q Consensus 537 ~g~~p~~~~~~~ll~~~~~~g~~~ 560 (565)
.+ ..+..++..+..++...|+.+
T Consensus 545 ~~-p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 545 LS-TNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp HS-SCCHHHHHHHHHHHHHTTCHH
T ss_pred hC-CCChHHHHHHHHHHHHhCCHH
Confidence 43 224455555555555555544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-33 Score=295.05 Aligned_cols=424 Identities=11% Similarity=0.045 Sum_probs=355.0
Q ss_pred HhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCCh
Q 008454 114 LKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSP 193 (565)
Q Consensus 114 ~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (565)
....+++..|+.+|+.+... +.+..++..++.++.+.|++++|..+|+++......... .-.+...-...+.+.
T Consensus 127 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 200 (597)
T 2xpi_A 127 YCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKN---ANKLLMQDGGIKLEA 200 (597)
T ss_dssp HHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------------CCCSSCCHHH
T ss_pred HHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccc---cccccccccccchhH
Confidence 45567999999999988654 357889999999999999999999999854332100000 000000000123367
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHH--------------------------------------H
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKF--------------------------------------L 235 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--------------------------------------l 235 (565)
.+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+ +
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 89999999999999999999999999887643 44444433 4
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 008454 236 SSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLS 315 (565)
Q Consensus 236 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 315 (565)
..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+.+.. +..++..++.++.+.|+++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHH
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHH
Confidence 5566788999999999998765 579999999999999999999999999999987643 7888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 316 LAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEML 395 (565)
Q Consensus 316 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 395 (565)
+|.++++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.
T Consensus 357 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 357 KLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998654 4578999999999999999999999999998764 4568899999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC
Q 008454 396 RNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS----GCRP 471 (565)
Q Consensus 396 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p 471 (565)
+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|
T Consensus 435 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 435 RLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 8754 37889999999999999999999999999886543 7899999999999999999999999999886 6678
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHH
Q 008454 472 N--KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLP-KGFDKLR 548 (565)
Q Consensus 472 ~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ 548 (565)
+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+.. | +...+..
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~ 589 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS--PNEIMASDL 589 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHHHH
Confidence 7 7899999999999999999999999999874 4478999999999999999999999999998764 4 4556655
Q ss_pred HHhhcc
Q 008454 549 TINCAP 554 (565)
Q Consensus 549 ll~~~~ 554 (565)
+..++.
T Consensus 590 l~~~~~ 595 (597)
T 2xpi_A 590 LKRALE 595 (597)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 555554
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.6e-30 Score=264.30 Aligned_cols=207 Identities=15% Similarity=0.226 Sum_probs=166.6
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------h
Q 008454 315 SLAMKFKNLMEKNGIQPNV-ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGN---------S 384 (565)
Q Consensus 315 ~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~ 384 (565)
..+..+.+++.+.+....+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445566777777665443 45788889999999999999999999999999999999999999887654 5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 385 EMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 385 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 464 (565)
+.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 77888888888888888988999999999998999999999998888888888888999999888888888999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008454 465 IRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHC 521 (565)
Q Consensus 465 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 521 (565)
.+.|+.||..+|+.||.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888898889999998888899999999998888888888888888888888764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.9e-27 Score=234.19 Aligned_cols=382 Identities=13% Similarity=0.043 Sum_probs=330.9
Q ss_pred HHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 008454 146 VLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL 225 (565)
Q Consensus 146 l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 225 (565)
++..+.+.|++++|...++.+.+. .|.+...+..+...+...|++++|...++...+...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~-------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p- 64 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ-------------------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP- 64 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Confidence 345667889999999999988877 556778888899999999999999999999988653
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008454 226 PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLI 305 (565)
Q Consensus 226 p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 305 (565)
.+..+|..+...+.+.|++++|+..|+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+.... +...+..+.
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 142 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 378999999999999999999999999998753 335678999999999999999999999999886432 456777888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008454 306 SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSE 385 (565)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 385 (565)
..+...|++++|.+.++++.+.. +.+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|+++
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 89999999999999999998864 3367899999999999999999999999999875 456788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 386 MGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMI 465 (565)
Q Consensus 386 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 465 (565)
+|...+++..+.... +..++..+...|.+.|++++|...|+++.+.+.. +..+|..+...+.+.|++++|.+.|++++
T Consensus 221 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 221 RAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999886433 6889999999999999999999999999987543 67789999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-Hh
Q 008454 466 RSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK-GF 544 (565)
Q Consensus 466 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 544 (565)
+.. +.+..++..+...+.+.|++++|...++++.+. .+.+..++..+..+|.+.|++++|.+.|+++.+. .|+ ..
T Consensus 299 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~ 374 (388)
T 1w3b_A 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFAD 374 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHH
T ss_pred hhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHH
Confidence 874 678899999999999999999999999999886 3446788999999999999999999999999864 454 45
Q ss_pred hHHHHHhhcccCC
Q 008454 545 DKLRTINCAPENG 557 (565)
Q Consensus 545 ~~~~ll~~~~~~g 557 (565)
.+..+..++.+.|
T Consensus 375 a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 375 AYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHcc
Confidence 5655555555444
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5.4e-30 Score=260.47 Aligned_cols=208 Identities=18% Similarity=0.283 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------H
Q 008454 280 ERAVEVFKNMESMGFIPSV-TTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK---------L 349 (565)
Q Consensus 280 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~ 349 (565)
..+..+.+++.+.+..... ..++.+|++|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4455666777777766554 45888999999999999999999999999999999999999999987664 7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 350 HEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDL 429 (565)
Q Consensus 350 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (565)
++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 430 DKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNE 487 (565)
Q Consensus 430 ~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 487 (565)
.+.|+.||..+|+.||.+|++.|+.++|.+++++|.+.|+.|+..||+.++..|+..+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999998643
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.1e-26 Score=231.60 Aligned_cols=381 Identities=12% Similarity=0.045 Sum_probs=331.6
Q ss_pred HHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCC
Q 008454 113 LLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSS 192 (565)
Q Consensus 113 l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (565)
.....++++.|++.|+.+.+..| .+...+..+..++...|++++|...++..++. .+.+
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-------------------~p~~ 66 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-------------------NPLL 66 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------CCCc
Confidence 34567899999999999888765 56778888999999999999999999988876 5668
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA 272 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 272 (565)
..+|..+...|.+.|++++|++.|+++.+.... +..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 889999999999999999999999999886533 67789999999999999999999999998764 2345677888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 352 (565)
+...|++++|.+.|+++.+.... +..+|..+...+.+.|++++|...++++.+.+. .+...|..+...+...|++++|
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999886433 688999999999999999999999999998753 3678899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 353 NRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
...+++..+.. +.+..++..+...+.+.|++++|...|+++.+.+.. +..+|..+...+.+.|++++|...++++.+.
T Consensus 223 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 223 VAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999988764 446788999999999999999999999999987543 6788999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 433 SLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILS 512 (565)
Q Consensus 433 ~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (565)
.. .+..++..+...+...|++++|.+.++++++.. +.+..++..+..++.+.|++++|...++++++.. +.+...|.
T Consensus 301 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~ 377 (388)
T 1w3b_A 301 CP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYS 377 (388)
T ss_dssp CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHH
T ss_pred Cc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 43 478899999999999999999999999999863 5568899999999999999999999999999853 23566777
Q ss_pred HHHHHHHhcCC
Q 008454 513 ELYSGLHHCGK 523 (565)
Q Consensus 513 ~li~~~~~~g~ 523 (565)
.+...+...|+
T Consensus 378 ~lg~~~~~~~~ 388 (388)
T 1w3b_A 378 NMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTCC
T ss_pred hHHHHHHHccC
Confidence 77777766553
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.5e-22 Score=204.16 Aligned_cols=365 Identities=13% Similarity=0.053 Sum_probs=297.9
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNM 268 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (565)
.+.+...+..++..|.+.|++++|+..|+++.+.... +..++..+...+...|++++|+..|+++.+.+ +.+...+..
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 99 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQ 99 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 5667888999999999999999999999999886543 78999999999999999999999999998865 346889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 008454 269 VMHAFCKLGIIERAVEVFKNMESMGFIPSV---TTYNTL------------ISGHCNKGLLSLAMKFKNLMEKNGIQPNV 333 (565)
Q Consensus 269 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 333 (565)
+..+|.+.|++++|.+.|+++.+.... +. ..+..+ ...+.+.|++++|...++++.+.. +.+.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 999999999999999999999986422 33 555555 444889999999999999998864 3478
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH----
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNAL---- 409 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---- 409 (565)
..+..+..+|.+.|++++|+++|+++.+.. +.+..++..++..|...|++++|...|+++.+.... +...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 889999999999999999999999998764 557889999999999999999999999999876432 45555444
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 410 --------ILGLCKEGKTKKAAYLVKDLDKNSLVPN----ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFE 477 (565)
Q Consensus 410 --------i~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 477 (565)
+..+.+.|++++|...|+.+.+.... + ...|..+...+.+.|++++|+..++++++.. +.+..+|.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 88999999999999999999875322 2 4478889999999999999999999999864 55789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------------HHhcC-----CHHHHHHHHHHH-HHCC-
Q 008454 478 MLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSG------------LHHCG-----KDELAMKLFRKM-EIRG- 538 (565)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m-~~~g- 538 (565)
.+..+|...|++++|...++++++.. +-+...+..+..+ |...| +.+++.+.|+++ .+..
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999853 2245566666532 33344 667788888874 3331
Q ss_pred -CCCCH-------hhHHHHHhhcccCCCccCC
Q 008454 539 -LLPKG-------FDKLRTINCAPENGEKESG 562 (565)
Q Consensus 539 -~~p~~-------~~~~~ll~~~~~~g~~~~~ 562 (565)
..|+. ..+..+..++...||.++.
T Consensus 413 d~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 413 DNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp GGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 11222 3677777888888887754
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-22 Score=210.11 Aligned_cols=376 Identities=10% Similarity=-0.044 Sum_probs=312.2
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
.+.+......+.+.|++++|...++++++.. +++.++..++.+|.+.|++++|++.|+++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------p~~~~~~~la~~~~~~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--------------------EDPVFYSNLSACYVSVGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------------------ccHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 4567788889999999999999999999872 36788999999999999999999999999
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC--------------------------------------
Q 008454 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISP-------------------------------------- 261 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p-------------------------------------- 261 (565)
.+.+.. +..+|..+..++...|++++|...|+.+...+...
T Consensus 66 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 66 LELKPD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp HHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred hccChH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 887643 77899999999999999999999999987654210
Q ss_pred ----------------------------------------CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----CC
Q 008454 262 ----------------------------------------NVYTLNMVMHAFCK---LGIIERAVEVFKNMES-----MG 293 (565)
Q Consensus 262 ----------------------------------------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g 293 (565)
+...+......+.. .|++++|...++++.+ ..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 12233333333333 7999999999999987 31
Q ss_pred CC--------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 294 FI--------PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVS 365 (565)
Q Consensus 294 ~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 365 (565)
-. .+...+..+...+...|++++|..+++++.+... +...+..+...+...|++++|.+.++++.+.. +
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 301 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-S 301 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-T
T ss_pred cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-c
Confidence 11 2356778888999999999999999999988753 38888999999999999999999999998764 4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008454 366 PNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALI 445 (565)
Q Consensus 366 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 445 (565)
.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.... +...+..+.
T Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 379 (514)
T 2gw1_A 302 NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFA 379 (514)
T ss_dssp TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHH
Confidence 56778899999999999999999999999987544 6778899999999999999999999999876433 567889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 446 TGQCVRKNSERAFQLYKSMIRSGC-RPN----KHIFEMLMSTFCQ---NEDFDRAAEVLLEMLEKCMAPDSIILSELYSG 517 (565)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 517 (565)
..+...|++++|...++++.+... .++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 458 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 999999999999999999987521 111 3488889999999 999999999999998864 3467788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 008454 518 LHHCGKDELAMKLFRKMEIRGLLPKGF 544 (565)
Q Consensus 518 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 544 (565)
|.+.|++++|.+.|++..+.. |+..
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~~--~~~~ 483 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADLA--RTME 483 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--SSHH
T ss_pred HHHhcCHHHHHHHHHHHHHhc--cccH
Confidence 999999999999999998764 4443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=5.5e-22 Score=201.61 Aligned_cols=334 Identities=11% Similarity=0.051 Sum_probs=272.7
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (565)
.+...+..++..+.+.|++++|..+++++++. .+.++.++..++.+|...|++++|++.|+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-------------------DPDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------CCccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46778888899999999999999999998876 45578889999999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-H---HHHHHH------------HHHHHHcCCHHH
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN-V---YTLNMV------------MHAFCKLGIIER 281 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~-~---~~~~~l------------i~~~~~~g~~~~ 281 (565)
++.+.+.. +..++..+...+.+.|++++|...|+++.+.. |+ . ..+..+ ...+...|++++
T Consensus 85 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 85 KVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99887644 68889999999999999999999999998753 33 3 455555 344888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 282 AVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 282 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 361 (565)
|+..++++.+... .+...+..+..+|.+.|++++|..+++++.+.. +.+..++..+...|...|++++|++.|+++.+
T Consensus 162 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999987643 378889999999999999999999999998764 34788999999999999999999999999987
Q ss_pred CCCCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 008454 362 TNVSPNVVTYNTL------------INGYGQVGNSEMGASLYEEMLRNGIKVD----ILTYNALILGLCKEGKTKKAAYL 425 (565)
Q Consensus 362 ~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~ 425 (565)
.. +.+...+..+ ...+.+.|++++|...|+++.+.... + ...+..++.++.+.|++++|...
T Consensus 240 ~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 63 3344444444 78899999999999999999885332 2 45788899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------------HHhcC-----C
Q 008454 426 VKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMST------------FCQNE-----D 488 (565)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~ 488 (565)
++++.+... .+...|..+..+|...|++++|...++++++.. +-+...+..+..+ |...| +
T Consensus 318 ~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 999887543 268899999999999999999999999999863 3345666666533 33334 5
Q ss_pred HHHHHHHHHHH
Q 008454 489 FDRAAEVLLEM 499 (565)
Q Consensus 489 ~~~A~~~~~~~ 499 (565)
.+++.+.++++
T Consensus 396 ~~~~~~~y~~~ 406 (450)
T 2y4t_A 396 KQEIIKAYRKL 406 (450)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56677777763
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.5e-22 Score=203.66 Aligned_cols=366 Identities=14% Similarity=-0.037 Sum_probs=308.9
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccC
Q 008454 110 KHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMC 189 (565)
Q Consensus 110 ~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (565)
.+......+++..|+..|+.+....| +...+..++.++...|++++|...++++++. .
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------~ 69 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALEL-------------------K 69 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------C
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-------------------C
Confidence 34455667899999999999998764 7889999999999999999999999999987 4
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-------------------------------------------
Q 008454 190 DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLP------------------------------------------- 226 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------------------------------------------- 226 (565)
|.+..++..++.+|.+.|++++|+..|+++...+...
T Consensus 70 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (514)
T 2gw1_A 70 PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK 149 (514)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh
Confidence 5678899999999999999999999999997765310
Q ss_pred -----------------------------------CHHHHHHHHHHHHc---CCChHHHHHHHHHHHH-----CCC----
Q 008454 227 -----------------------------------IIESCNKFLSSLLD---SERVDIALGFYKEMRR-----NRI---- 259 (565)
Q Consensus 227 -----------------------------------~~~~~~~ll~~~~~---~~~~~~A~~~~~~m~~-----~~~---- 259 (565)
+...+......+.. .|++++|...|+++.+ ...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 229 (514)
T 2gw1_A 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED 229 (514)
T ss_dssp -------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccc
Confidence 13334444444444 8999999999999987 311
Q ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 008454 260 ----SPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVIT 335 (565)
Q Consensus 260 ----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 335 (565)
+.+...+..+...+...|++++|...++++.+.... ...+..+...+...|++++|...++++.+.. +.+...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 306 (514)
T 2gw1_A 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSV 306 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHH
Confidence 123567888889999999999999999999887533 8888999999999999999999999998874 336788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCK 415 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (565)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+..
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHH
Confidence 9999999999999999999999998864 446778899999999999999999999999886433 66789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 416 EGKTKKAAYLVKDLDKNSLV-PN----ASTYSALITGQCV---RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNE 487 (565)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 487 (565)
.|++++|...++.+.+.... ++ ...|..+...+.. .|++++|...++.+++.. +.+..++..+...+.+.|
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 99999999999998764322 11 3488899999999 999999999999999874 556888999999999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 008454 488 DFDRAAEVLLEMLEKC 503 (565)
Q Consensus 488 ~~~~A~~~~~~~~~~~ 503 (565)
++++|...++++.+..
T Consensus 464 ~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 464 DIDEAITLFEESADLA 479 (514)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999999863
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=8.5e-21 Score=197.39 Aligned_cols=371 Identities=11% Similarity=0.028 Sum_probs=296.7
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
.+.+......+.+.|++++|...++++++. .|.++.++..+..+|.+.|++++|++.|+++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 85 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-------------------DPNEPVFYSNISACYISTGDLEKVIEFTTKA 85 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh-------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456788888999999999999999999887 4567889999999999999999999999999
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-------------------------------------CC
Q 008454 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS-------------------------------------PN 262 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-------------------------------------p~ 262 (565)
.+.+.. +..++..+...+...|++++|...|+.+ ..... |+
T Consensus 86 l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 163 (537)
T 3fp2_A 86 LEIKPD-HSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163 (537)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_pred HhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch
Confidence 887644 7889999999999999999999998643 21111 11
Q ss_pred HH------------------------------HHHHHHHHH--------HHcCCHHHHHHHHHHHHhCCCCCC-------
Q 008454 263 VY------------------------------TLNMVMHAF--------CKLGIIERAVEVFKNMESMGFIPS------- 297 (565)
Q Consensus 263 ~~------------------------------~~~~li~~~--------~~~g~~~~a~~~~~~m~~~g~~p~------- 297 (565)
.. ....+...+ ...|++++|..+++++.+.... +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~ 242 (537)
T 3fp2_A 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA 242 (537)
T ss_dssp HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH
T ss_pred HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH
Confidence 11 111111111 1124788999999998876432 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLING 377 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 377 (565)
..++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHH
Confidence 335666778888999999999999999986 4568888899999999999999999999998864 4567889999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 378 YGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERA 457 (565)
Q Consensus 378 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 457 (565)
+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999986543 5678999999999999999999999999886543 667889999999999999999
Q ss_pred HHHHHHHHHcC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 458 FQLYKSMIRSG-----CRPNKHIFEMLMSTFCQN----------EDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCG 522 (565)
Q Consensus 458 ~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 522 (565)
.+.++++++.. .......+......+... |++++|...++++.+.. +.+..++..+...|.+.|
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 99999988742 111223344555677777 99999999999998863 346788999999999999
Q ss_pred CHHHHHHHHHHHHHCC
Q 008454 523 KDELAMKLFRKMEIRG 538 (565)
Q Consensus 523 ~~~~A~~~~~~m~~~g 538 (565)
++++|.+.|++..+..
T Consensus 477 ~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 477 KIDEAIELFEDSAILA 492 (537)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhC
Confidence 9999999999998764
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=2.4e-19 Score=186.42 Aligned_cols=365 Identities=10% Similarity=-0.014 Sum_probs=292.5
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccC
Q 008454 110 KHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMC 189 (565)
Q Consensus 110 ~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (565)
.+......+++..|++.|+.+....| .+...+..+..++...|++++|...++++++. .
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------~ 89 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEI-------------------K 89 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------C
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------C
Confidence 34455667899999999999998765 57889999999999999999999999999987 4
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-------------------------------------cCHH---
Q 008454 190 DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL-------------------------------------PIIE--- 229 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------------------------------p~~~--- 229 (565)
+.++.++..+..+|...|++++|++.|+.+.. ... |+..
T Consensus 90 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 90 PDHSKALLRRASANESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 56788899999999999999999999964421 111 0100
Q ss_pred ---------------------------HHHHHHHHHHc--------CCChHHHHHHHHHHHHCCCCCC-------HHHHH
Q 008454 230 ---------------------------SCNKFLSSLLD--------SERVDIALGFYKEMRRNRISPN-------VYTLN 267 (565)
Q Consensus 230 ---------------------------~~~~ll~~~~~--------~~~~~~A~~~~~~m~~~~~~p~-------~~~~~ 267 (565)
....+...+.. .|++++|..+|+++.+.... + ..++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALC 247 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHH
Confidence 11112222211 14788999999999875422 2 23566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 268 MVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 268 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
.+...+...|++++|.+.++++.+.. |+...+..+...+...|++++|...++++.+... .+..++..+...+...|
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcC
Confidence 77788889999999999999998864 5688889999999999999999999999988653 36888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 348 KLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVK 427 (565)
Q Consensus 348 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 427 (565)
++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++
T Consensus 325 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998864 44567899999999999999999999999998743 367789999999999999999999999
Q ss_pred HHHhCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 428 DLDKNSL-----VPNASTYSALITGQCVR----------KNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 428 ~~~~~~~-----~p~~~~~~~li~~~~~~----------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 492 (565)
++.+... ......+..+...+... |++++|...++++++.. +.+..++..+...+.+.|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 9865321 11223345556667777 99999999999999874 56788899999999999999999
Q ss_pred HHHHHHHHHcC
Q 008454 493 AEVLLEMLEKC 503 (565)
Q Consensus 493 ~~~~~~~~~~~ 503 (565)
...|+++.+..
T Consensus 482 ~~~~~~al~~~ 492 (537)
T 3fp2_A 482 IELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998864
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.3e-18 Score=170.47 Aligned_cols=303 Identities=14% Similarity=0.045 Sum_probs=180.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
++..+..+...+...|++++|+..|+++.+.... +..++..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3456777888899999999999999999886643 67888889999999999999999999988753 236678888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 008454 272 AFCKLGIIERAVEVFKNMESMGFI--PSVTTYNTL------------ISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFN 337 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 337 (565)
.+...|++++|...++++.+.... .+...+..+ ...+...|++++|..+++++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999988876320 133334333 355556666666666666665543 22455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----------
Q 008454 338 TLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYN---------- 407 (565)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~---------- 407 (565)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.... +...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHH
Confidence 56666666666666666666665543 334555556666666666666666666665554221 222221
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008454 408 --ALILGLCKEGKTKKAAYLVKDLDKNSLVPNA----STYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMS 481 (565)
Q Consensus 408 --~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 481 (565)
.+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|+..++++++.. +.+..++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 1133344444555554444444433211 11 112233344444444444444444444432 223444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 008454 482 TFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~ 501 (565)
.+...|++++|...++++.+
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 44444444444444444444
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.5e-18 Score=170.19 Aligned_cols=320 Identities=11% Similarity=0.028 Sum_probs=265.2
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
+.+.+..+...+...|++++|...++++++. .+.++.++..+...+...|++++|+..|++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 62 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-------------------DPDNYIAYYRRATVFLAMGKSKAALPDLTK 62 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3567888899999999999999999999987 456788999999999999999999999999
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHHcCCHHHHHH
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS--PNVYTLNMV------------MHAFCKLGIIERAVE 284 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l------------i~~~~~~g~~~~a~~ 284 (565)
+.+.... +...+..+...+...|++++|...|+++.+.... .+...+..+ ...+...|++++|.+
T Consensus 63 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 63 VIALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 9887643 7789999999999999999999999999876320 134444444 578889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 285 VFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364 (565)
Q Consensus 285 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 364 (565)
.++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++..+..
T Consensus 142 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~- 218 (359)
T 3ieg_A 142 FLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 218 (359)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 9999987643 378889999999999999999999999999874 3478899999999999999999999999998764
Q ss_pred CCCHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 365 SPNVVTYN------------TLINGYGQVGNSEMGASLYEEMLRNGIKVDI----LTYNALILGLCKEGKTKKAAYLVKD 428 (565)
Q Consensus 365 ~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~ 428 (565)
+.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|...+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33333333 2366788999999999999999986433 33 3355688899999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 429 LDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 429 ~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
+.+.... +...|..+...+...|++++|.+.|+++++.. +-+...+..+..+..
T Consensus 298 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 298 VLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 9886432 78899999999999999999999999999864 344566666655543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=2.5e-16 Score=161.62 Aligned_cols=352 Identities=11% Similarity=0.009 Sum_probs=200.6
Q ss_pred CHHHHHHHHHHHHh----CCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHh----cCChH
Q 008454 139 TLETHSIVLHILTK----NRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAH----RKKFR 210 (565)
Q Consensus 139 ~~~~~~~l~~~l~~----~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 210 (565)
+.+++..+...+.. .+++++|..++++..+.| ++..+..|...|.. .++++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------------------~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------------------YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHcCCCCCCCHH
Confidence 44555555555555 566666666666665543 34455555556655 56666
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 008454 211 NATDTFCQMRDYGFLPIIESCNKFLSSLLD----SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK----LGIIERA 282 (565)
Q Consensus 211 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 282 (565)
+|++.|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|
T Consensus 97 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 97 QAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 6666666665543 44555555555555 556666666666665543 44555555555555 5566666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 008454 283 VEVFKNMESMGFIPSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK----KGKLHEANR 354 (565)
Q Consensus 283 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 354 (565)
.+.|++..+.| +...+..+...|.. .++.++|.+++++..+.| +...+..+...|.. .+++++|.+
T Consensus 171 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 171 REWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 66666665543 45555555555555 566666666666665543 34455555555554 556666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHH
Q 008454 355 IFSEMKATNVSPNVVTYNTLINGYGQ----VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKE-----GKTKKAAYL 425 (565)
Q Consensus 355 ~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~ 425 (565)
+|++..+.+ +...+..+...|.. .++.++|...|++..+.| +...+..+...|... ++.++|...
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 666655543 34444455555554 566666666666665543 344555555555555 566666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 008454 426 VKDLDKNSLVPNASTYSALITGQCVRK---NSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ----NEDFDRAAEVLLE 498 (565)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 498 (565)
+++..+.+ +...+..+...|...| +.++|++.|++..+.| +...+..+...|.. .+++++|...|++
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 66665543 3344555555555444 5566666666666543 44555555555555 5666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 008454 499 MLEKCMAPDSIILSELYSGLHH----CGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 499 ~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 538 (565)
..+.+ +...+..|...|.. .++.++|...|++..+.+
T Consensus 393 A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 393 AAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 66543 34555555555555 566666666666665554
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=6.3e-16 Score=158.61 Aligned_cols=370 Identities=12% Similarity=0.034 Sum_probs=306.1
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----CCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCC
Q 008454 117 QKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTK----NRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSS 192 (565)
Q Consensus 117 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (565)
.+++..|+..|+.+... .+..++..+...+.. .+++++|..++++..+.| +
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------------------~ 110 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---------------------L 110 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------C
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------------------C
Confidence 67999999999998875 267888899999988 899999999999998874 5
Q ss_pred hHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHH
Q 008454 193 PLVFDLLFKTYAH----RKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD----SERVDIALGFYKEMRRNRISPNVY 264 (565)
Q Consensus 193 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~ 264 (565)
+..+..|...|.. .+++++|++.|++..+.| +..++..+...|.. .++.++|.+.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 6777788888888 889999999999999876 67888889888887 789999999999998875 788
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHH
Q 008454 265 TLNMVMHAFCK----LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNGIQPNVITF 336 (565)
Q Consensus 265 ~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~ 336 (565)
.+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|..++++..+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 88889888888 899999999999999875 67788888888886 789999999999998875 56677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHH
Q 008454 337 NTLIFGFCK----KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQV-----GNSEMGASLYEEMLRNGIKVDILTYN 407 (565)
Q Consensus 337 ~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~ 407 (565)
..+...|.. .+++++|++.|++..+.| +...+..+...|... ++.++|...|++..+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 778888887 899999999999998765 566777888888877 89999999999999875 557788
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 408 ALILGLCKEG---KTKKAAYLVKDLDKNSLVPNASTYSALITGQCV----RKNSERAFQLYKSMIRSGCRPNKHIFEMLM 480 (565)
Q Consensus 408 ~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (565)
.+...|...| +.++|...|++..+.+ +...+..|...|.. .+++++|.+.|++..+.| +...+..|.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8888888866 7899999999998863 67788889998988 899999999999999875 577888888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 481 STFCQ----NEDFDRAAEVLLEMLEKCMA-P-DSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 481 ~~~~~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
..|.. .++.++|...|++..+.+.. | +......+...+. .+.+.+.+..+++.++
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~~ 467 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIEK 467 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHHH
Confidence 88888 89999999999999987643 2 3333443433322 2344444444444433
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=5.3e-18 Score=164.25 Aligned_cols=279 Identities=9% Similarity=0.005 Sum_probs=122.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008454 233 KFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG 312 (565)
Q Consensus 233 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 312 (565)
.+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.... +...|..+...+...|
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVG 104 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhh
Confidence 33333334444444444444443321 112223333333344444444444444444432211 2333444444444444
Q ss_pred -ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008454 313 -LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLY 391 (565)
Q Consensus 313 -~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (565)
++++|...+++..+.. +.+...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...+
T Consensus 105 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 105 HKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp SCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444444444332 1133344444444444444444444444444432 122333344444444445555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 392 EEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNS--------LVPNASTYSALITGQCVRKNSERAFQLYKS 463 (565)
Q Consensus 392 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 463 (565)
+++.+... .+...+..+...+...|++++|...++++.+.. ...+...+..+...+...|++++|...+++
T Consensus 183 ~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 183 SQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44444322 134444455555555555555555555443311 011234455555555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 464 MIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGL 518 (565)
Q Consensus 464 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 518 (565)
+++.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..++
T Consensus 262 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 262 ALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 55542 2344455555555555555555555555555432 12344444444444
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=5.7e-18 Score=164.01 Aligned_cols=295 Identities=13% Similarity=-0.015 Sum_probs=249.3
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNM 268 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (565)
.+.++.++..++..+...|++++|+++|+++.+.... +...+..++..+...|++++|...++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 4456778888999999999999999999999887644 56677778889999999999999999998764 346788899
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 269 VMHAFCKLG-IIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 269 li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
+...+...| ++++|.+.+++..+.... +...|..+...+...|++++|...++++.+... .+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh
Confidence 999999999 999999999999986533 577899999999999999999999999988743 35677778999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCH
Q 008454 348 KLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNG--------IKVDILTYNALILGLCKEGKT 419 (565)
Q Consensus 348 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~ 419 (565)
++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. ......++..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998874 5567889999999999999999999999988642 133467899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHH
Q 008454 420 KKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF-CQNEDFD 490 (565)
Q Consensus 420 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~ 490 (565)
++|...++++.+.... +...+..+...+...|++++|.+.++++++.. +.+...+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999999876543 67789999999999999999999999998864 45677888888777 4556544
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=5.4e-18 Score=167.07 Aligned_cols=288 Identities=13% Similarity=-0.025 Sum_probs=206.9
Q ss_pred CCChHHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 008454 241 SERVDIALG-FYKEMRRNRI---SPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSL 316 (565)
Q Consensus 241 ~~~~~~A~~-~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 316 (565)
.|++++|.. .|++...... ..+...+..+...+...|++++|...|+++.+... .+...+..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 6654433211 11234566666777777777777777777776543 256677777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhc
Q 008454 317 AMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNT---------------LINGYGQV 381 (565)
Q Consensus 317 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---------------li~~~~~~ 381 (565)
|...++++.+.. +.+..++..+...+...|++++|.+.++++.... +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777776654 2366677777777777777777777777777653 112222211 23334488
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 382 GNSEMGASLYEEMLRNGIKV-DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQL 460 (565)
Q Consensus 382 g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 460 (565)
|++++|...++++.+..... +..++..+...|...|++++|...++++.+.... +...|..+...+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998764332 5788999999999999999999999998876433 678899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 461 YKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAP----------DSIILSELYSGLHHCGKDELAMKL 530 (565)
Q Consensus 461 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~ 530 (565)
++++++.. +.+..++..+..++.+.|++++|...++++.+..... ...+|..+..+|...|+.++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99998874 5567889999999999999999999999987652211 267899999999999999999988
Q ss_pred HHH
Q 008454 531 FRK 533 (565)
Q Consensus 531 ~~~ 533 (565)
+++
T Consensus 353 ~~~ 355 (368)
T 1fch_A 353 DAR 355 (368)
T ss_dssp HTT
T ss_pred HHH
Confidence 764
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=6.2e-16 Score=160.34 Aligned_cols=396 Identities=11% Similarity=0.054 Sum_probs=272.3
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
..+++..|..+|+.+....| .+...|..++..+.+.|++++|..+|+++++. +| +...
T Consensus 24 ~~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-------------------~p-~~~l 81 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQFP--SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-------------------VL-HIDL 81 (530)
T ss_dssp HSSCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-------------------CC-CHHH
T ss_pred HhCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------------------CC-ChHH
Confidence 35788889999998887654 57788888888888889999999999888876 33 5666
Q ss_pred HHHHHHHH-HhcCChHHHHH----HHHHHHHC-CCCc-CHHHHHHHHHHHHc---------CCChHHHHHHHHHHHHCCC
Q 008454 196 FDLLFKTY-AHRKKFRNATD----TFCQMRDY-GFLP-IIESCNKFLSSLLD---------SERVDIALGFYKEMRRNRI 259 (565)
Q Consensus 196 ~~~li~~~-~~~g~~~~A~~----~~~~~~~~-~~~p-~~~~~~~ll~~~~~---------~~~~~~A~~~~~~m~~~~~ 259 (565)
|..++... ...|+++.|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++..+...
T Consensus 82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence 76666533 34577777665 66666543 4433 56777777776654 6788889999988876311
Q ss_pred CCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHH------hCC---CCCC--------HHHHHHHHHHHH
Q 008454 260 SPNVYTLNMVMHAF-------------CKLGIIERAVEVFKNME------SMG---FIPS--------VTTYNTLISGHC 309 (565)
Q Consensus 260 ~p~~~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~p~--------~~~~~~li~~~~ 309 (565)
......|....... .+.++++.|..++..+. +.. +.|+ ...|...+....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 11123444333211 02345667777766532 211 2333 245555554332
Q ss_pred hc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhCCCCCC
Q 008454 310 NK----GLL----SLAMKFKNLMEKNGIQPNVITFNTLIFGFCK-------KGKLH-------EANRIFSEMKATNVSPN 367 (565)
Q Consensus 310 ~~----g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~~~ 367 (565)
.. ++. +.+..++++..... +-+...|..++..+.+ .|+++ +|..++++..+.-.+-+
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 22 222 36677888877652 3367788888877775 68876 88888888876323446
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 368 VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVD-ILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALIT 446 (565)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 446 (565)
...|..++..+.+.|++++|..+|+++.+.... + ...|..++..+.+.|++++|..+|+...+.... +...|...+.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHH
Confidence 778888888888889999999999998885322 3 357888888888888999999999988875322 2333333222
Q ss_pred H-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHHhcC
Q 008454 447 G-QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCM-APD--SIILSELYSGLHHCG 522 (565)
Q Consensus 447 ~-~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~li~~~~~~g 522 (565)
. +...|+.++|..+|+..++.. +-+...|..++..+.+.|+.++|..+|++++..+. .|+ ...|...+......|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 335888999999999888763 44678888888888888999999999999887632 232 447878888888889
Q ss_pred CHHHHHHHHHHHHHC
Q 008454 523 KDELAMKLFRKMEIR 537 (565)
Q Consensus 523 ~~~~A~~~~~~m~~~ 537 (565)
+.+.+..+++++.+.
T Consensus 478 ~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 478 DLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888765
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=5e-18 Score=167.31 Aligned_cols=289 Identities=10% Similarity=0.001 Sum_probs=201.9
Q ss_pred hcCChHHHHH-HHHHHHHCCCC-c--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 205 HRKKFRNATD-TFCQMRDYGFL-P--IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIE 280 (565)
Q Consensus 205 ~~g~~~~A~~-~~~~~~~~~~~-p--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 280 (565)
-.|++++|++ .|++....... | +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 66654433211 1 23455666666777777777777777776653 235566666677777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHH
Q 008454 281 RAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNT---------------LIFGFCK 345 (565)
Q Consensus 281 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~ 345 (565)
+|.+.++++.+... .+..++..+...+...|++++|...++++...... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 77777777665532 25666666777777777777777777776665322 1111111 2333448
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 346 KGKLHEANRIFSEMKATNVSP-NVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (565)
.|++++|...++++.+..... +..++..+...+...|++++|...++++.+... .+..++..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999988764211 578888899999999999999999999887643 367889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHH
Q 008454 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPN-----------KHIFEMLMSTFCQNEDFDRAA 493 (565)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-----------~~~~~~li~~~~~~g~~~~A~ 493 (565)
.++++.+... .+...+..+...|.+.|++++|...|+++++.. +.+ ..+|..+..++...|++++|.
T Consensus 273 ~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 273 AYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999887643 367889999999999999999999999988752 122 688999999999999999999
Q ss_pred HHHHHH
Q 008454 494 EVLLEM 499 (565)
Q Consensus 494 ~~~~~~ 499 (565)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 887643
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=4.1e-15 Score=154.17 Aligned_cols=406 Identities=13% Similarity=0.077 Sum_probs=299.2
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcC
Q 008454 128 TWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRK 207 (565)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 207 (565)
+.+.+..| .+...|..++.. ...|++++|..+++++++. .|.+...|..++..+.+.|
T Consensus 3 e~al~~~P--~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-------------------~P~~~~~w~~~~~~~~~~~ 60 (530)
T 2ooe_A 3 EKKLEENP--YDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-------------------FPSSGRFWKLYIEAEIKAK 60 (530)
T ss_dssp HHHHHHCT--TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-------------------CTTCHHHHHHHHHHHHHTT
T ss_pred hhHhhhCC--CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-------------------CCCCHHHHHHHHHHHHhcC
Confidence 34444443 578889888884 7789999999999999987 6678889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HcCCChHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHH-----
Q 008454 208 KFRNATDTFCQMRDYGFLPIIESCNKFLSSL-LDSERVDIALG----FYKEMRR-NRISP-NVYTLNMVMHAFCK----- 275 (565)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~~~~~~A~~----~~~~m~~-~~~~p-~~~~~~~li~~~~~----- 275 (565)
++++|..+|+++.... |++..|...+... ...|+.+.|.+ +|+.... .|..| +...|...+....+
T Consensus 61 ~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~ 138 (530)
T 2ooe_A 61 NYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVG 138 (530)
T ss_dssp CHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCS
T ss_pred CHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcc
Confidence 9999999999999987 5888888877544 35677776655 7777654 35443 56778777776654
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-------------HhcCChhHHHHHHHHHH------HCC---C
Q 008454 276 ----LGIIERAVEVFKNMESMGFIPSVTTYNTLISGH-------------CNKGLLSLAMKFKNLME------KNG---I 329 (565)
Q Consensus 276 ----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~g---~ 329 (565)
.|+++.|..+|++..+.........|....... .+.++++.|..++..+. +.. +
T Consensus 139 ~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 139 SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 789999999999998842221134444332211 13467888888777632 211 2
Q ss_pred CCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCChH-
Q 008454 330 QPN--------VITFNTLIFGFCKK----GKL----HEANRIFSEMKATNVSPNVVTYNTLINGYGQ-------VGNSE- 385 (565)
Q Consensus 330 ~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~- 385 (565)
+|+ ...|...+...... ++. +.|..+|++..... +.+...|..++..+.+ .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 343 35666666543332 232 47888999888763 4567888888888775 69987
Q ss_pred ------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 008454 386 ------MGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNA-STYSALITGQCVRKNSERAF 458 (565)
Q Consensus 386 ------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~ 458 (565)
+|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+.+.+.... +. ..|..++..+.+.|++++|.
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHH
Confidence 89999999987323346889999999999999999999999999985322 33 58999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMST-FCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
++|++.++.. +.+...|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++....
T Consensus 377 ~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 377 MIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 9999999863 2333444333222 346899999999999998863 346789999999999999999999999999987
Q ss_pred C-CCCC--HhhHHHHHhhcccCCCccC
Q 008454 538 G-LLPK--GFDKLRTINCAPENGEKES 561 (565)
Q Consensus 538 g-~~p~--~~~~~~ll~~~~~~g~~~~ 561 (565)
+ ..|+ ...|...+......|+.+.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4 3343 3466666776666776553
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=3.6e-17 Score=161.11 Aligned_cols=265 Identities=12% Similarity=-0.040 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 263 VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFG 342 (565)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 342 (565)
...+..+...+.+.|++++|++.|+++.+... .+..+|..+...+...|++++|...++++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34466666677777777777777777766532 256677777777777777777777777776653 2356677777777
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 008454 343 FCKKGKLHEANRIFSEMKATNVSPN-----------VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIK-VDILTYNALI 410 (565)
Q Consensus 343 ~~~~g~~~~A~~~~~~m~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li 410 (565)
|...|++++|++.++++.+.. |+ ...+..+...+...|++++|..+++++.+.... .+..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 777777777777777776542 11 223344577888889999999999998876432 2678888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFD 490 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 490 (565)
..|...|++++|...++++.+.... +..+|..+...|...|++++|+..|+++++.. +.+..++..+..++.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999998876443 67889999999999999999999999998874 455888999999999999999
Q ss_pred HHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 491 RAAEVLLEMLEKCMA-----------PDSIILSELYSGLHHCGKDELAMKLFRK 533 (565)
Q Consensus 491 ~A~~~~~~~~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 533 (565)
+|...++++++.... .+..+|..+..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998764211 1256789999999999999988877654
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=3.4e-16 Score=151.23 Aligned_cols=261 Identities=10% Similarity=0.017 Sum_probs=177.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 268 MVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 268 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
.+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC
Confidence 3344444555555555555554443221 44444455555555555555555555554432 224445555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 348 KLHEANRIFSEMKATNVSPNVVTYNTL--------------IN-GYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILG 412 (565)
Q Consensus 348 ~~~~A~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 412 (565)
++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.... +...+..+...
T Consensus 104 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 181 (327)
T 3cv0_A 104 NANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL 181 (327)
T ss_dssp CHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 5555555555555432 1111122111 22 366778889999999988876433 67888889999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 492 (565)
+...|++++|...++++.+.... +...+..+...+...|++++|...++++++.. +.+..++..+...+...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999988876433 67788999999999999999999999998864 55678899999999999999999
Q ss_pred HHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 493 AEVLLEMLEKCMAP-----------DSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 493 ~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
...++++.+..... +..+|..+..++.+.|+.++|..++++.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999998753221 4678899999999999999999988754
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=9.4e-17 Score=158.12 Aligned_cols=234 Identities=11% Similarity=-0.076 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA 272 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 272 (565)
...+..+...+.+.|++++|++.|+++.+.... +..+|..+...+...|++++|+..|+++.+.. +.+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345778888888999999999999998876643 67888888888888888888888888887753 3357788888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFI---------PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ-PNVITFNTLIFG 342 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~ 342 (565)
|...|++++|++.++++.+.... .....+..+...+...|++++|..+++++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 88888888888888887764210 00112223344555555555555555555544211 134455555555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 343 FCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKA 422 (565)
Q Consensus 343 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (565)
|.+.|++++|++.++++.+.. +.+..+|..+..+|...|++++|...|+++.+.... +..++..+..+|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 555555555555555554432 233444555555555555555555555554443211 344444444445555555555
Q ss_pred HHHHHHHH
Q 008454 423 AYLVKDLD 430 (565)
Q Consensus 423 ~~~~~~~~ 430 (565)
...|+++.
T Consensus 301 ~~~~~~al 308 (365)
T 4eqf_A 301 VSNFLTAL 308 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.8e-16 Score=153.24 Aligned_cols=279 Identities=8% Similarity=-0.061 Sum_probs=169.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA 272 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 272 (565)
...+..+...+...|++++|+.+|+++.+.... +...+..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 345667888899999999999999999886643 77888888999999999999999999987753 3467788888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcCCHH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIF--GFCKKGKLH 350 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~ 350 (565)
+...|++++|.+.++++.+.... +...+..+... .++......+.. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 88899999999999888876322 11122211000 000111111111 244445555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 351 EANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 351 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
+|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555442 23445555555555555555555555555554422 245555666666666666666666666655
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 431 KNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRP-----------NKHIFEMLMSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 431 ~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (565)
+.... +...+..+...+...|++++|.+.++++++..... +..++..+..++.+.|++++|..++++.
T Consensus 234 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 54322 45556666666666666666666666665542110 2456666666666667766666666543
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=2.2e-14 Score=154.76 Aligned_cols=372 Identities=13% Similarity=0.124 Sum_probs=258.8
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCC-CCCcHHHHHHHHHhc-ccCCC---------ChHHHHHHHHHHHhc
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDS-FDLPSKLFDSILYSY-RMCDS---------SPLVFDLLFKTYAHR 206 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~li~~~~~~ 206 (565)
.+++--...+..+...|.+.+|.+++++..-.+. +.....+=..++.+. +.... +.....-+...+...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISN 1062 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhC
Confidence 3455555666666677777777777777664322 112222222222221 11111 112233467788889
Q ss_pred CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008454 207 KKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVF 286 (565)
Q Consensus 207 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 286 (565)
|.+++|..+|++... .....+.++. ..+++++|.+++++.. +..+|..+..++...|++++|++.|
T Consensus 1063 glyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999998632 2333343333 6678999988888652 5678889999999999999999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 287 KNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSP 366 (565)
Q Consensus 287 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 366 (565)
.+. -|...|..++..+.+.|++++|.+++....+.. ++....+.++.+|++.+++++....+ . .+
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 664 278888889999999999999999998877654 33333445888899998888544332 2 34
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 367 NVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALIT 446 (565)
Q Consensus 367 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 446 (565)
+...|..+...|...|++++|..+|... ..|..++.+|++.|++++|.+.+++.. +..+|..+..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHH
Confidence 6667778889999999999999999885 478889999999999999999998763 5678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCH
Q 008454 447 GQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHC--GKD 524 (565)
Q Consensus 447 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~ 524 (565)
+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... +-....|+.|...|.+- ++.
T Consensus 1259 acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHH
Confidence 888899888888876543 3456777888999999999999999998887653 33445676666666653 344
Q ss_pred HHHHHHHHHHHHC-CCCC------CHhhHHHHHhhcccCCCccCC
Q 008454 525 ELAMKLFRKMEIR-GLLP------KGFDKLRTINCAPENGEKESG 562 (565)
Q Consensus 525 ~~A~~~~~~m~~~-g~~p------~~~~~~~ll~~~~~~g~~~~~ 562 (565)
.++.++|. ++ ++.+ +...|..++..|.+.|+++.|
T Consensus 1333 mEhlk~f~---~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1333 REHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHHHHHHH---HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 44444444 33 2222 455677777778777777654
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.3e-15 Score=144.45 Aligned_cols=254 Identities=9% Similarity=0.017 Sum_probs=173.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGII 279 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 279 (565)
++-....|+++.|+..++................+.++|...|+++.|+..++. .-+|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344556788888888887765543222234556667888888888888876644 1345667777777788888888
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 280 ERAVEVFKNMESMGFIP-SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSE 358 (565)
Q Consensus 280 ~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 358 (565)
++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888887765444 455566666778888888888888776 34677777788888888888888888888
Q ss_pred HHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 359 MKATNVSPNVVTY---NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV 435 (565)
Q Consensus 359 m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (565)
+.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+....
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 87763 443211 112233334477777777777777663 346777777777777777777777777777665433
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 008454 436 PNASTYSALITGQCVRKNSER-AFQLYKSMIRS 467 (565)
Q Consensus 436 p~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~~ 467 (565)
+..++..++..+...|+.++ +.++++++++.
T Consensus 233 -~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 -HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 66677777777777777654 45677777765
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.1e-15 Score=144.78 Aligned_cols=273 Identities=7% Similarity=0.000 Sum_probs=188.1
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008454 236 SSLLDSERVDIALGFYKEMRRNRISPN--VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGL 313 (565)
Q Consensus 236 ~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 313 (565)
+-....|+++.|+..++..... .|+ ......+.++|...|+++.|+..++. .-.|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 4455678888888887765433 233 23555667888888888888876644 134567777778888888888
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 314 LSLAMKFKNLMEKNGIQP-NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYE 392 (565)
Q Consensus 314 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 392 (565)
.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888887766434 455566666888888888888888876 3567778888888888888888888888
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008454 393 EMLRNGIKVDILTY---NALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC 469 (565)
Q Consensus 393 ~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 469 (565)
++.+.. |+.... ..++..+...|++++|..+|+++.+... .+...|+.+..++.+.|++++|...++++++..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 887764 332211 2233334445788888888888877633 377778888888888888888888888888764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008454 470 RPNKHIFEMLMSTFCQNEDFDR-AAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMK 529 (565)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 529 (565)
+-+..++..++..+...|+.++ +.++++++.+. .|+... +.+...+.+.++++..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHH
Confidence 4567778778878888887765 56777877765 333322 2233444455555443
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=175.00 Aligned_cols=118 Identities=10% Similarity=0.067 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008454 403 ILTYNALILGLCKEGKTKKAAYLVKDLDK---NSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEML 479 (565)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (565)
..+|++||++||+.|++++|..+|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34555555555555555555555544432 244555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 480 MSTFCQNED-FDRAAEVLLEMLEKCMAPDSIILSELYSGLHH 520 (565)
Q Consensus 480 i~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 520 (565)
|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.+..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 555555554 34455555555555555555555555444333
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=6.8e-18 Score=176.36 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRR---NRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNT 303 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 303 (565)
...+||++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345777788888888888888777777653 46777778888888888888888888888888877777778888888
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 304 LISGHCNKGLL-SLAMKFKNLMEKNGIQPNVITFNTLIFGFCKK 346 (565)
Q Consensus 304 li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 346 (565)
+|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 88777777764 66777777887777777777777777655443
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=1e-16 Score=155.47 Aligned_cols=282 Identities=13% Similarity=0.089 Sum_probs=114.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 205 HRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVE 284 (565)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 284 (565)
+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4467788888887773 2347778888888888888888887542 466677777888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 285 VFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364 (565)
Q Consensus 285 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 364 (565)
.++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66655553 3456667778888888888887777664 256668888888888888888888888766
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSAL 444 (565)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 444 (565)
..|..++.++++.|++++|.+.+.++ .++.+|..++.+|+..|+++.|...... +..++.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 35777888888888888888888877 2677888888888888888888544443 22344445567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC------CHHHHHHHHHH
Q 008454 445 ITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK-CMAP------DSIILSELYSG 517 (565)
Q Consensus 445 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p------~~~~~~~li~~ 517 (565)
+..|.+.|++++|+.+++..+... +-....|+.|..++++- ++++.++.++....+ +++| +...|..+.-.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888877654 55567777776666654 333333333322211 2222 23457777777
Q ss_pred HHhcCCHHHHHH
Q 008454 518 LHHCGKDELAMK 529 (565)
Q Consensus 518 ~~~~g~~~~A~~ 529 (565)
|.+.++++.|..
T Consensus 292 y~~~~e~d~A~~ 303 (449)
T 1b89_A 292 YDKYEEYDNAII 303 (449)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHhhchHHHHHH
Confidence 777788877765
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=3.4e-16 Score=151.88 Aligned_cols=287 Identities=13% Similarity=0.088 Sum_probs=125.7
Q ss_pred HHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCC
Q 008454 111 HVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCD 190 (565)
Q Consensus 111 ~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (565)
.+++..-++.+.|.+|++... .+.+|..++.++.+.|++++|.+.|.+.
T Consensus 10 ~~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------------------------ 58 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------------------ 58 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------------------------
Confidence 344445566788888888662 2358889999999999999998888542
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM 270 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 270 (565)
+++..|..++.++...|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IG 129 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVG 129 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTT-------CC---------
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHH
Confidence 24557888888888899999999977776663 3457778889999999999998888774 36777999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 271 HAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLH 350 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 350 (565)
..|...|++++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++
T Consensus 130 d~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 130 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp -------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHH
Confidence 9999999999999999876 36888999999999999999998887 27889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 008454 351 EANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKE--GKTKKAAYLVKD 428 (565)
Q Consensus 351 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~ 428 (565)
.|...... +...+.....++..|.+.|.+++|..+++...... .-....|+.|.-.|++- +++.+.+++|..
T Consensus 195 lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 195 LAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99555443 22334445568888999999999999999888665 44667777777777654 344455554442
Q ss_pred HHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 429 LDKNSLVP------NASTYSALITGQCVRKNSERAFQL 460 (565)
Q Consensus 429 ~~~~~~~p------~~~~~~~li~~~~~~~~~~~A~~~ 460 (565)
- .++.| +...|..+.-.|.+.++++.|...
T Consensus 269 ~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 269 R--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp T--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred H--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 1 11111 334578888888888888887763
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=3.6e-14 Score=144.75 Aligned_cols=383 Identities=10% Similarity=-0.055 Sum_probs=252.0
Q ss_pred CCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 008454 137 SLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTF 216 (565)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 216 (565)
......|+.+..++...|++++|++.+++.++.- ... ..-...+....+|+.+..+|...|++++|+..+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~---------~~~-~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~ 117 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELI---------QQE-HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------HHH-SGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------Hhc-CccccchHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3446688999999999999999999999876530 000 000112335578999999999999999999999
Q ss_pred HHHHHC-----CC--CcCHHHHHHHHHHHHc--CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHHHHHH
Q 008454 217 CQMRDY-----GF--LPIIESCNKFLSSLLD--SERVDIALGFYKEMRRNRISPNVYTLNMVMHA---FCKLGIIERAVE 284 (565)
Q Consensus 217 ~~~~~~-----~~--~p~~~~~~~ll~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~---~~~~g~~~~a~~ 284 (565)
++..+. +. .....++..+..++.. .+++++|+..|++..+... -+...+..+..+ +...++.++|++
T Consensus 118 ~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp HHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred HHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 987642 11 1145667666656554 4579999999999987642 245555544444 445678889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 285 VFKNMESMGFIPSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMK 360 (565)
Q Consensus 285 ~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 360 (565)
.+++..+.... +...+..+...+.. .|++++|.+++++..... +.+..++..+...|.+.|++++|.+.+++..
T Consensus 197 ~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 197 PLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp HHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 99988876432 56666666555544 467889999999988764 3477889999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 361 ATNVSPNVVTYNTLINGYGQV-------------------GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKK 421 (565)
Q Consensus 361 ~~~~~~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 421 (565)
+.. +-+..++..+..+|... +..+.|...+++..+.... +...+..+...|...|++++
T Consensus 275 ~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 275 EYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHH
Confidence 864 44556666666555332 2356777788877765432 45667889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 422 AAYLVKDLDKNSLVPNAS--TYSALIT-GQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 422 A~~~~~~~~~~~~~p~~~--~~~~li~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
|...|++..+....+... .+..+.. .....|+.++|+..|.+.++. .|+...... ....+.+++++
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~ 421 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKM 421 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHH
Confidence 999999998765443221 2222222 234678999999999999886 455332222 23445556666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhH
Q 008454 499 MLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG-LLPKGFDK 546 (565)
Q Consensus 499 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~ 546 (565)
.++.+ +.+..+|..+...|...|++++|.+.|++..+.| ..|+...+
T Consensus 422 ~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 422 RLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 66653 4467889999999999999999999999998764 33554443
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=5.4e-13 Score=144.14 Aligned_cols=297 Identities=11% Similarity=0.087 Sum_probs=201.0
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CcCHHHHHHHHH---------------------------HHHcCC
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGF--LPIIESCNKFLS---------------------------SLLDSE 242 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~---------------------------~~~~~~ 242 (565)
+|.--...+++|...|.+.+|+++++++.-.+- .-+....+.++. .+...|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 333444566667777777777777777663221 012344444443 444556
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008454 243 RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKN 322 (565)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 322 (565)
.+++|..+|++.. -.....+.++. ..|++++|.++.++.. +..+|..+..++...|++++|.+.|.
T Consensus 1064 lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6666666666542 12222222222 5566666666666442 46777788888888888888888875
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008454 323 LMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVD 402 (565)
Q Consensus 323 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 402 (565)
+. -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+. + .++
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 53 366777778888888888888888887766653 33333345777788887777533332 2 235
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 403 ILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMST 482 (565)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 482 (565)
...|..+...|...|++++|..+|..+ ..|..+...+++.|++++|.+.+++. .+..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 566777888888888888888888864 36888888888888888888888876 345788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 483 FCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
|...|++..|...... +..+...+..++..|.+.|.+++|..+++.....
T Consensus 1260 cve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8888888888776543 3346777889999999999999999999877543
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=6.5e-14 Score=142.87 Aligned_cols=368 Identities=10% Similarity=-0.057 Sum_probs=250.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhc-------CCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHH
Q 008454 108 RVKHVLLKVQKDYVLSLEFFTWVQTH-------KPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFD 180 (565)
Q Consensus 108 ~~~~~l~~~~~~~~~al~~f~~~~~~-------~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~ 180 (565)
...+.+....|+++.|++.|+.+... ...+....+|..+..++...|++++|...++++.+...
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~--------- 125 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE--------- 125 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH---------
Confidence 34566778889999999999987652 11234577899999999999999999999988765410
Q ss_pred HHHHhcccCCCChHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCcCHHHHHHHHHH---HHcCCChHHHHHHHHHHH
Q 008454 181 SILYSYRMCDSSPLVFDLLFKTYAHR--KKFRNATDTFCQMRDYGFLPIIESCNKFLSS---LLDSERVDIALGFYKEMR 255 (565)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~---~~~~~~~~~A~~~~~~m~ 255 (565)
.+. -......+.++..+..++.+. +++++|++.|++..+.... +...+..+... +...++.++|++.+++..
T Consensus 126 ~~~--~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 126 KFS--SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp HSC--CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred hcc--cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 000 000122456676666666554 5799999999999887643 56666665555 345678889999999887
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 008454 256 RNRISPNVYTLNMVMHAFCK----LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP 331 (565)
Q Consensus 256 ~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 331 (565)
+.. +.+...+..+...+.. .|++++|.+.+++...... .+...+..+...|...|++++|...+++..+... -
T Consensus 203 ~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~ 279 (472)
T 4g1t_A 203 RLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-N 279 (472)
T ss_dssp HHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-T
T ss_pred hcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-C
Confidence 754 2356666666555544 4678899999999887643 3678889999999999999999999999988642 3
Q ss_pred CHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 332 NVITFNTLIFGFCKK-------------------GKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYE 392 (565)
Q Consensus 332 ~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 392 (565)
+..++..+..+|... +.++.|...++...+.. +.+...+..+...+...|++++|...|+
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 358 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQ 358 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHH
Confidence 566676666655432 23567888888877654 4456778889999999999999999999
Q ss_pred HHHHCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008454 393 EMLRNGIKVDIL--TYNALIL-GLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC 469 (565)
Q Consensus 393 ~m~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 469 (565)
+..+....+... .+..+.. .+...|+.++|+..|.+..+.. |+..... +..+.+.++++..++..
T Consensus 359 kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~- 426 (472)
T 4g1t_A 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLSKN- 426 (472)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-
Confidence 999875443221 2333332 2346799999999999998754 4432222 22344556666666654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 470 RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC 503 (565)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 503 (565)
+.+..+|..+..++...|++++|.+.|++.++.+
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5677899999999999999999999999998864
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4e-14 Score=131.45 Aligned_cols=222 Identities=11% Similarity=0.034 Sum_probs=108.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCC----HHHHHHH
Q 008454 301 YNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN--VSPN----VVTYNTL 374 (565)
Q Consensus 301 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~----~~~~~~l 374 (565)
+..+...+...|++++|..++++..+.. .+...+..+..++...|++++|++.++++.+.. ..++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 334444444444444444444444444443321 0001 2344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008454 375 INGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNS 454 (565)
Q Consensus 375 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 454 (565)
...+...|++++|...++++.+.. |+. ..+.+.|++++|...++.+...... +...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCH
Confidence 444444555555555554444421 221 2233444555555555555543211 333455555555556666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 455 ERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 455 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
++|...++++++.. +.+..++..+...+...|++++|...++++++.. +.+...|..+...+.+.|++++|.+.+++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666655543 3345555556666666666666666666665542 223555555666666666666666666655
Q ss_pred HH
Q 008454 535 EI 536 (565)
Q Consensus 535 ~~ 536 (565)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.5e-14 Score=130.51 Aligned_cols=224 Identities=13% Similarity=0.055 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CC----HHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ--PN----VITFNT 338 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~----~~~~~~ 338 (565)
.+..+...+...|++++|...|++..+.. .+...+..+...+...|++++|...+++..+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444455555555555555555555444 34555555555555555555555555555442110 11 355556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 339 LIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGK 418 (565)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 418 (565)
+...+...|++++|.+.++++.+.. ++. ..+...|++++|...++++..... .+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcC
Confidence 6666666666666666666665542 331 234455666777777776666432 245566667777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 419 TKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 419 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
+++|...++++.+.... +...|..+...+...|++++|+..++++++.. +.+...+..+..++.+.|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777777665433 56677777777777777777777777777764 44567777777777778888888887777
Q ss_pred HHHc
Q 008454 499 MLEK 502 (565)
Q Consensus 499 ~~~~ 502 (565)
+.+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=7.1e-14 Score=126.41 Aligned_cols=197 Identities=15% Similarity=0.033 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 332 NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALIL 411 (565)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 411 (565)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 44455555555555666666666665555543 334455555555555566666666666655554322 4455555555
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 412 GLCKE-----------GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLM 480 (565)
Q Consensus 412 ~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (565)
.+... |++++|...+++..+.... +...|..+...+...|++++|+..|+++++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 7777777777777665433 55666777777777777777777777777765 5666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 481 STFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
.++...|++++|...++++++.. +.+...+..+...+...|++++|...|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777777776653 235566667777777777777777777654
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=7.4e-14 Score=126.28 Aligned_cols=199 Identities=14% Similarity=-0.046 Sum_probs=134.2
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM 270 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 270 (565)
+++..+..+...+.+.|++++|+..|++..+.... +...+..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45667778888888889999999999888886644 77888888888888888888888888887754 23567777788
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 271 HAFCKL-----------GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTL 339 (565)
Q Consensus 271 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 339 (565)
..+... |++++|+..+++..+.... +...+..+..++...|++++|+..+++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 888777 7777777777777665322 45666667777777777777777777776665 466667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 340 IFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEML 395 (565)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 395 (565)
..+|...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777777766653 3455666666667777777777776666554
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=2.2e-12 Score=121.07 Aligned_cols=224 Identities=12% Similarity=-0.017 Sum_probs=148.4
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD----SERVDIALGFYKEMRRNRISPNVYTL 266 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~ 266 (565)
.++.++..+...|...|++++|++.|++..+.+ +..++..+...+.. .+++++|+..|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 356667777777888888888888888877732 55677777777777 777777777777777664 56667
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 267 NMVMHAFCK----LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNGIQPNVITFNT 338 (565)
Q Consensus 267 ~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 338 (565)
..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 777777777 777777777777776654 56666666666766 677777777777766654 4555566
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 339 LIFGFCK----KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQ----VGNSEMGASLYEEMLRNGIKVDILTYNALI 410 (565)
Q Consensus 339 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 410 (565)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 6666666 666677777666666543 34555556666666 666666666666666553 244555555
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhC
Q 008454 411 LGLCK----EGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 411 ~~~~~----~g~~~~A~~~~~~~~~~ 432 (565)
..|.+ .+++++|...|++..+.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 55555 56666666666655544
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=9.5e-14 Score=140.36 Aligned_cols=346 Identities=9% Similarity=-0.021 Sum_probs=167.3
Q ss_pred HHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCCh---HHHHHHHHHHHHC
Q 008454 146 VLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKF---RNATDTFCQMRDY 222 (565)
Q Consensus 146 l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~ 222 (565)
+...+.+.|++++|..++++..+.| ++.++..|...|...|+. ++|++.|++..+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---------------------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~ 67 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---------------------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---------------------CCTGGGTCC-------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC
Confidence 4555666777778888777776664 223333444555555655 6777777666643
Q ss_pred CCCcCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhCCC
Q 008454 223 GFLPIIESCNKFLSSLLDSE-----RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIE---RAVEVFKNMESMGF 294 (565)
Q Consensus 223 ~~~p~~~~~~~ll~~~~~~~-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~ 294 (565)
+...+..+...+...+ ++++|+..|++..+.|.. ..+..|...|...+..+ ++.+.+....+.|
T Consensus 68 ----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g- 139 (452)
T 3e4b_A 68 ----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG- 139 (452)
T ss_dssp -------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-
T ss_pred ----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-
Confidence 4445555555444443 556677777776665422 24444555555444322 2333333333333
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHH
Q 008454 295 IPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG---KLHEANRIFSEMKATNVSPNVVTY 371 (565)
Q Consensus 295 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~ 371 (565)
+...+..|...|...+.++++......+.+.-...+...+..+...|.+.| +.++|++.|++..+.| .++...+
T Consensus 140 --~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~ 216 (452)
T 3e4b_A 140 --YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV 216 (452)
T ss_dssp --CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH
T ss_pred --CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH
Confidence 233444455555555544443333222221111112225556666666666 6666666666666655 3444443
Q ss_pred HHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 372 NTLINGYGQV----GNSEMGASLYEEMLRNGIKVDILTYNALILG-L--CKEGKTKKAAYLVKDLDKNSLVPNASTYSAL 444 (565)
Q Consensus 372 ~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 444 (565)
..+...|... +++++|...|++.. . -+...+..+... + ...++.++|...|++..+.| +...+..|
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~L 289 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLL 289 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 4455555433 46666666666665 2 234444555554 2 34566666666666666554 44455555
Q ss_pred HHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 445 ITGQCVRK-----NSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ----NEDFDRAAEVLLEMLEKCMAPDSIILSELY 515 (565)
Q Consensus 445 i~~~~~~~-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 515 (565)
...|. .| ++++|++.|++.. . -+...+..|...|.. ..++++|...|++..+.|. ......|.
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg 361 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIA 361 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHH
Confidence 55554 33 6666666666665 2 244455555555544 2366666666666665542 22333444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCC
Q 008454 516 SGLHH----CGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 516 ~~~~~----~g~~~~A~~~~~~m~~~g 538 (565)
..|.. ..+.++|..+|+...+.|
T Consensus 362 ~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 362 QLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 44442 345666666666665555
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=1.3e-13 Score=139.48 Aligned_cols=381 Identities=11% Similarity=-0.011 Sum_probs=252.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCc---hhHHHHHHHHhhcCCCCCcHHHHHHHHH
Q 008454 108 RVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKF---KSSESILRGILDSDSFDLPSKLFDSILY 184 (565)
Q Consensus 108 ~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~a~~ll~~~~~~~~~~~~~~~~~~~~~ 184 (565)
.-.......+++++.|++.|+.+.... +.+++..+..++...|+. ++|..++++..+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------------- 67 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--------------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---------------
Confidence 344555666789999999999987653 234555666666667777 8999998887754
Q ss_pred hcccCCCChHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChH---HHHHHHHHHHH
Q 008454 185 SYRMCDSSPLVFDLLFKTYAHRK-----KFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVD---IALGFYKEMRR 256 (565)
Q Consensus 185 ~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~---~A~~~~~~m~~ 256 (565)
++..+..|...+...+ ++++|+..|++..+.|.. .++..+...|...+..+ ++.+.+.....
T Consensus 68 -------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~ 137 (452)
T 3e4b_A 68 -------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQA 137 (452)
T ss_dssp ----------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 3455666777555555 789999999999997743 36777788887766544 35555555554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCH
Q 008454 257 NRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG---LLSLAMKFKNLMEKNGIQPNV 333 (565)
Q Consensus 257 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~ 333 (565)
.| +...+..+...|...+.++++......+.+.-...+...+..|...|...| +.++|++.+++..+.|. ++.
T Consensus 138 ~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a 213 (452)
T 3e4b_A 138 AG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTA 213 (452)
T ss_dssp HT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCH
T ss_pred CC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHH
Confidence 44 445666777778888855554444333322211123337888888999999 99999999999999874 466
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008454 334 ITFNTLIFGFCKK----GKLHEANRIFSEMKATNVSPNVVTYNTLING-Y--GQVGNSEMGASLYEEMLRNGIKVDILTY 406 (565)
Q Consensus 334 ~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 406 (565)
..+..+...|... +++++|+++|++.. .| +...+..+... + ...+++++|...|++..+.| +...+
T Consensus 214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~ 286 (452)
T 3e4b_A 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAE 286 (452)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 6666777777654 79999999999987 43 55666777766 4 56899999999999999876 67788
Q ss_pred HHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 407 NALILGLCKEG-----KTKKAAYLVKDLDKNSLVPNASTYSALITGQCV----RKNSERAFQLYKSMIRSGCRPNKHIFE 477 (565)
Q Consensus 407 ~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 477 (565)
..|...|. .| ++++|...|++.. . -+...+..|...|.. ..++++|...|+...+.|. + ....
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~ 358 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N--SADF 358 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHH
Confidence 88888887 55 9999999999887 3 366777777777766 4499999999999998773 3 3445
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 478 MLMSTFCQ----NEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 478 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.|...|.. ..+.++|...++...+.|.. +....-..+......++.++|.++.++..+.
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 55555653 46899999999999988643 2222222223333445677788888776543
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=4e-12 Score=119.31 Aligned_cols=223 Identities=13% Similarity=-0.023 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK----KGKLHEANRIFSEMKATNVSPNVVTYNT 373 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 373 (565)
..++..+...+...|++++|...+++..+.+ +..++..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3344444444555555555555555554421 33444444555555 555555555555555443 4444555
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008454 374 LINGYGQ----VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCK----EGKTKKAAYLVKDLDKNSLVPNASTYSALI 445 (565)
Q Consensus 374 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 445 (565)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 555555555555555543 44555555555555 555555555555555543 344455555
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 446 TGQCV----RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ----NEDFDRAAEVLLEMLEKCMAPDSIILSELYSG 517 (565)
Q Consensus 446 ~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 517 (565)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 55555 556666666666665543 34455555555655 666666666666665542 24455555556
Q ss_pred HHh----cCCHHHHHHHHHHHHHCC
Q 008454 518 LHH----CGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 518 ~~~----~g~~~~A~~~~~~m~~~g 538 (565)
|.. .|++++|.+.|++..+.|
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 665 666666666666665554
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=5.2e-13 Score=130.88 Aligned_cols=249 Identities=10% Similarity=-0.019 Sum_probs=197.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSER-VDIALGFYKEMRRNRISPNVYTLNMVM 270 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~li 270 (565)
...+|..+...+.+.|++++|++.|+++.+.+.. +..+|+.+...+...|+ +++|+..|+++.+... -+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 5567888889999999999999999999987754 78899999999999997 9999999999988653 3778899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCH
Q 008454 271 HAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK-KGKL 349 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~ 349 (565)
.++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++... -+...|+.+..++.+ .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999887544 788899999999999999999999999988753 378889999998888 5665
Q ss_pred HHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----
Q 008454 350 HEA-----NRIFSEMKATNVSPNVVTYNTLINGYGQVG--NSEMGASLYEEMLRNGIKVDILTYNALILGLCKEG----- 417 (565)
Q Consensus 350 ~~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----- 417 (565)
++| ++.+++..... +-+...|..+...+...| ++++|.+.+.++ +. ...+...+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 666 47788777754 446677888888888877 688888888887 33 3346777888888888764
Q ss_pred ----CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 008454 418 ----KTKKAAYLVKDL-DKNSLVPNASTYSALITGQ 448 (565)
Q Consensus 418 ----~~~~A~~~~~~~-~~~~~~p~~~~~~~li~~~ 448 (565)
..++|..+++++ .+.+.. ....|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 257888888887 554321 344555554443
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=5.9e-13 Score=130.51 Aligned_cols=250 Identities=9% Similarity=0.015 Sum_probs=209.1
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCC-hHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKK-FRNATDTFC 217 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 217 (565)
....|..+..++...|++++|...++++++. .+.+..+|+.+..++...|+ +++|++.|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l-------------------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~ 156 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL-------------------NAANYTVWHFRRVLLKSLQKDLHEEMNYIT 156 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-------------------CccCHHHHHHHHHHHHHcccCHHHHHHHHH
Confidence 4567888889999999999999999999987 56688899999999999997 999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS 297 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 297 (565)
++.+.+.. +..+|+.+..++...|++++|+..|+++++... -+...|..+..++...|++++|+..++++++.... +
T Consensus 157 ~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~ 233 (382)
T 2h6f_A 157 AIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-N 233 (382)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-C
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-C
Confidence 99997755 889999999999999999999999999998653 37889999999999999999999999999987644 7
Q ss_pred HHHHHHHHHHHHh-cCChhHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHH
Q 008454 298 VTTYNTLISGHCN-KGLLSLA-----MKFKNLMEKNGIQPNVITFNTLIFGFCKKG--KLHEANRIFSEMKATNVSPNVV 369 (565)
Q Consensus 298 ~~~~~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~ 369 (565)
...|+.+..++.+ .|..++| +..+++...... -+...|..+...+.+.| ++++|++.+.++ +. .+.+..
T Consensus 234 ~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~ 310 (382)
T 2h6f_A 234 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPY 310 (382)
T ss_dssp HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHH
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHH
Confidence 8999999999999 6665888 478888877643 36788999999998888 689999999988 33 355677
Q ss_pred HHHHHHHHHHhcC---------ChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHH
Q 008454 370 TYNTLINGYGQVG---------NSEMGASLYEEM-LRNGIKVDILTYNALILGLC 414 (565)
Q Consensus 370 ~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~ 414 (565)
.+..+...|.+.| ..++|.++++++ .+.+. .....|..+...+.
T Consensus 311 al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 311 LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHH
Confidence 8888999998874 258999999999 55422 24455665555554
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=4.7e-13 Score=125.47 Aligned_cols=198 Identities=12% Similarity=0.096 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN--VYTLNMVMHA 272 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~ 272 (565)
.+......+...|++++|++.|+++.+.... +...+..+...+...|++++|+..+++..+.+..++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3445566666777777777777777665432 444666666666667777777777766665321111 2335566666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 352 (565)
+...|++++|++.+++..+.... +...+..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666554322 34555555556666666666666665555442 22344444444233333455555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHH
Q 008454 353 NRIFSEMKATNVSPNVVTYNTLINGYGQVGN---SEMGASLYEEMLR 396 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~ 396 (565)
.+.++++.+.. +.+...+..+...+...|+ +++|...++++.+
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 55555555442 2234444444555555454 4445555554443
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=1.3e-12 Score=121.03 Aligned_cols=198 Identities=10% Similarity=0.075 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCK 415 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (565)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 22334444444444444444444444444444322 134444455555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008454 416 EGKTKKAAYLVKDLDKNSLVP-NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAE 494 (565)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 494 (565)
.|++++|...++++.+.+..| +...+..+...+...|++++|.+.++++++.. +.+...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555554421222 23344555555555555555555555555542 3344555555555555566666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 495 VLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.++++.+.. +.+...+..+...+...|+.++|.+.++++.+.
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 655555432 234445555555555566666666666655543
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=1.6e-12 Score=120.35 Aligned_cols=201 Identities=11% Similarity=-0.007 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
...+..++..+...|++++|...++++++. .+.+..++..+...|...|++++|++.|+++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI-------------------DPSSADAHAALAVVFQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566667777777777777777777765 3345666777777777777777777777777
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 008454 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISP-NVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSV 298 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 298 (565)
.+.+.. +...+..+...+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.++++.+... .+.
T Consensus 98 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 175 (252)
T 2ho1_A 98 LASDSR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQP 175 (252)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCH
T ss_pred HHHCcC-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccH
Confidence 665432 56667777777777777777777777766522223 345566666666677777777777776665432 245
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 299 TTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT 362 (565)
Q Consensus 299 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 362 (565)
..+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 176 SVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 566666666666666666666666666543 234555666666666666666666666666554
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=2.7e-12 Score=116.22 Aligned_cols=202 Identities=9% Similarity=-0.002 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILG 412 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 412 (565)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 3445555555555566666666555555432 23344555555555566666666666665555422 245555566666
Q ss_pred HHHc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008454 413 LCKE-GKTKKAAYLVKDLDKNSLVPN-ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFD 490 (565)
Q Consensus 413 ~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 490 (565)
+... |++++|...++.+.+.+..|+ ...+..+...+...|++++|...++++++.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666655222222 3455666666666666666666666666543 334556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 491 RAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
+|..+++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666665432134555555666666666666666666666543
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=7.8e-13 Score=123.98 Aligned_cols=247 Identities=9% Similarity=0.003 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
.+.+......+...|++++|...++++++. .+.+..++..+...|...|++++|++.|+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 63 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK-------------------KYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHT-------------------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345667788899999999999999999987 4456678889999999999999999999999
Q ss_pred HHCCCCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008454 220 RDYGFLP--IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS 297 (565)
Q Consensus 220 ~~~~~~p--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 297 (565)
.+....+ ...+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|++.+++..+... .+
T Consensus 64 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~ 141 (272)
T 3u4t_A 64 FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TD 141 (272)
T ss_dssp HTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CC
T ss_pred HhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-Cc
Confidence 8844222 24568999999999999999999999998764 33668899999999999999999999999987632 36
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCC-CCCC------
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK---LHEANRIFSEMKATN-VSPN------ 367 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~~~------ 367 (565)
...|..+...+...+++++|.+.++++.+.. +.+...+..+...+...|+ +++|...+++..+.. -.|+
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 220 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDEL 220 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHH
Confidence 7777777734555569999999999998864 2357788888888888888 888888888876531 1122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 368 VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNAL 409 (565)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 409 (565)
...|..+...|...|++++|...++++.+.... +......+
T Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l 261 (272)
T 3u4t_A 221 IEANEYIAYYYTINRDKVKADAAWKNILALDPT-NKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-HHHHHHHh
Confidence 246777888888888888888888888876432 44444433
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=2.7e-12 Score=116.25 Aligned_cols=202 Identities=11% Similarity=-0.017 Sum_probs=107.1
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
++.++..+...+...|++++|++.|+++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3444555555555555555555555555543322 34555555555555555555555555554432 224445555555
Q ss_pred HHHHc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 272 AFCKL-GIIERAVEVFKNMESMGFIPS-VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL 349 (565)
Q Consensus 272 ~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 349 (565)
.+... |++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 55555 556666555555555222222 3445555555556666666666665555442 12355555555666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 350 HEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 350 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
++|.+.++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666666655542113444555555555566666666666665554
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=2.2e-13 Score=127.86 Aligned_cols=222 Identities=11% Similarity=-0.088 Sum_probs=135.4
Q ss_pred hcCChHHHHHHHHHHHHCCCC---cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 205 HRKKFRNATDTFCQMRDYGFL---PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIER 281 (565)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 281 (565)
..|++++|++.|+++.+.... .+..++..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346778888888888775321 145667777777777888888888887777653 2356677777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 282 AVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 282 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 361 (565)
|.+.+++..+.... +...+..+...+.+.|++++|...++++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 77777777765322 45666677777777777777777777776642 3333333444444556777777777766555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 362 TNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKV---DILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 362 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
.. +++...+ .++..+...++.++|...+....+..... +..++..+...|...|++++|...|+++.+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 42 2232222 34555555566666666666654431110 1344555555555555555555555555543
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=4.4e-13 Score=125.77 Aligned_cols=221 Identities=10% Similarity=-0.067 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 301 YNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQ 380 (565)
Q Consensus 301 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 380 (565)
+..+...+...|++++|...++++.+.. +.+..+|..+...+...|++++|.+.++++.+.. +.+...+..+...+..
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHH
Confidence 3334444444444444444444444332 1133444444444444444444444444444332 2233444444444444
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 381 VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQL 460 (565)
Q Consensus 381 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 460 (565)
.|++++|...++++.+.. |+.......+..+...|++++|...++....... ++...+ .++..+...++.++|+..
T Consensus 124 ~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMER 199 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHH
Confidence 444444444444444421 1111222222233344555555555544433221 122222 234444445555555555
Q ss_pred HHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 461 YKSMIRSGCR---PNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLF 531 (565)
Q Consensus 461 ~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 531 (565)
+.++.+.... .+..++..+...+.+.|++++|...++++++.. |+. +.....++...|++++|.+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 5555432100 013455556666666666666666666665542 211 112233445555555555544
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=7e-13 Score=121.87 Aligned_cols=201 Identities=11% Similarity=0.097 Sum_probs=119.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
.+..|..+...+...|++++|+..|+++.+.... +...+..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556777777788888888888888888775433 57777777777777888888888887776653 235666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 272 AFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 351 (565)
.+...|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777766532 255666666666777777777777777666543 2245566666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 352 ANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 352 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666665543 334555666666666666666666666666554
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=8.1e-13 Score=121.46 Aligned_cols=194 Identities=13% Similarity=0.076 Sum_probs=71.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008454 303 TLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVG 382 (565)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 382 (565)
.+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp --------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhc
Confidence 33333444444444444444443321 1133334444444444444444444444443332 123333334444444444
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008454 383 NSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYK 462 (565)
Q Consensus 383 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 462 (565)
++++|...++++.+... .+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++
T Consensus 106 ~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp CHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444433321 13333444444444444444444444444332211 33334444444444444444444444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 463 SMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 463 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
++.+.. +.+..++..+..++...|++++|...++++.+
T Consensus 184 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 184 AVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 444332 22333444444444444444444444444443
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=5.9e-13 Score=133.08 Aligned_cols=278 Identities=14% Similarity=0.017 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCH
Q 008454 228 IESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNV----YTLNMVMHAFCKLGIIERAVEVFKNMESM----GF-IPSV 298 (565)
Q Consensus 228 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~ 298 (565)
...+..+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|.+.+++..+. +. ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344455566667777777777777777664321 22 35666666666777777777777665432 11 1123
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHH
Q 008454 299 TTYNTLISGHCNKGLLSLAMKFKNLMEKN----G-IQPNVITFNTLIFGFCKKGK-----------------LHEANRIF 356 (565)
Q Consensus 299 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 356 (565)
..+..+...|...|++++|...+++..+. + ......++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 44555555666666666666666555432 1 01122344445555555555 45555444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 357 SEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGI-KVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV 435 (565)
Q Consensus 357 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (565)
++..+.. ...+. .....++..+...|...|++++|...+++..+....
T Consensus 207 ~~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 207 QENLKLM-------------------------------RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------------------------------HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 4432210 00000 011234445555555555555555555554331100
Q ss_pred -CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-
Q 008454 436 -PN----ASTYSALITGQCVRKNSERAFQLYKSMIRSGC--R---PNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCM- 504 (565)
Q Consensus 436 -p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 504 (565)
.+ ...+..+...|...|++++|...++++++... . ....++..+...+...|++++|..++++.++...
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 01 12455566666666666666666666554310 0 0134556666666677777777777666654310
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 505 ----APDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 505 ----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.....++..+...|.+.|++++|.+.+++..+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 011235566666777777777777777766543
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=1e-12 Score=130.77 Aligned_cols=273 Identities=13% Similarity=0.012 Sum_probs=158.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCCC-C
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI----IESCNKFLSSLLDSERVDIALGFYKEMRRN----RISP-N 262 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~p-~ 262 (565)
....+......+...|++++|+..|+++.+.+.. + ..++..+...+...|++++|...+++.... +-.| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4456667788889999999999999998886533 3 357888888888999999999988876432 1111 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC--------------------hhHH
Q 008454 263 VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI-PS----VTTYNTLISGHCNKGL--------------------LSLA 317 (565)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~--------------------~~~a 317 (565)
..++..+...+...|++++|...+++..+.... .+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 456677777888888888888888776543100 11 3356666777777777 7777
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHH
Q 008454 318 MKFKNLMEKN----GIQP-NVITFNTLIFGFCKKGKLHEANRIFSEMKATNV-SPN----VVTYNTLINGYGQVGNSEMG 387 (565)
Q Consensus 318 ~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A 387 (565)
...+++..+. +..+ ...++..+...|...|++++|.+.+++..+... .++ ...+..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7666655431 1111 123455566666666777777666666543210 011 12455555566666666666
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHH
Q 008454 388 ASLYEEMLRN----GIKV-DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV-PN----ASTYSALITGQCVRKNSERA 457 (565)
Q Consensus 388 ~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~A 457 (565)
...+++..+. +..+ ...++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6666555432 1000 0334455555555555555555555544321000 01 22344444445555555555
Q ss_pred HHHHHHHH
Q 008454 458 FQLYKSMI 465 (565)
Q Consensus 458 ~~~~~~m~ 465 (565)
.+.+++.+
T Consensus 327 ~~~~~~al 334 (406)
T 3sf4_A 327 MHFAEKHL 334 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 59
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=7.6e-10 Score=115.78 Aligned_cols=411 Identities=9% Similarity=0.019 Sum_probs=262.8
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCC---chhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccC--CC
Q 008454 117 QKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRK---FKSSESILRGILDSDSFDLPSKLFDSILYSYRMC--DS 191 (565)
Q Consensus 117 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 191 (565)
.+....+..+|+.+....| .....|...+..-.+.+. ++.+..+|++.+.. + ++
T Consensus 79 ~~~~~~aR~vyEraL~~fP--~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~-------------------~~~~~ 137 (679)
T 4e6h_A 79 LKQWKQVYETFDKLHDRFP--LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK-------------------ELGNN 137 (679)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS-------------------SSCCC
T ss_pred cCcHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh-------------------cCCCC
Confidence 3567778888888877644 566777777777777777 88888888888776 4 36
Q ss_pred ChHHHHHHHHHHHhcCCh--------HHHHHHHHHHHH-CCC-Cc-CHHHHHHHHHHHHc---------CCChHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKF--------RNATDTFCQMRD-YGF-LP-IIESCNKFLSSLLD---------SERVDIALGFY 251 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~-~~~-~p-~~~~~~~ll~~~~~---------~~~~~~A~~~~ 251 (565)
++..|...+....+.++. +...++|+.... .|. .+ +...|...+..... .++++.+..+|
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy 217 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence 777887777766665543 334467777654 355 34 45677777766542 33466778888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHhC--CCC---------------C-----
Q 008454 252 KEMRRNRISPNVYTLNMVMHAFCKLG-------------IIERAVEVFKNMESM--GFI---------------P----- 296 (565)
Q Consensus 252 ~~m~~~~~~p~~~~~~~li~~~~~~g-------------~~~~a~~~~~~m~~~--g~~---------------p----- 296 (565)
+..+......-..+|......--..+ +++.|...+.++... ++. |
T Consensus 218 ~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~ 297 (679)
T 4e6h_A 218 KTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY 297 (679)
T ss_dssp HHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCC
T ss_pred HHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchh
Confidence 88774311111234433322211111 122333444433211 111 1
Q ss_pred C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCC
Q 008454 297 S---VTTYNTLISGHCNKG-------LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEAN-RIFSEMKATNVS 365 (565)
Q Consensus 297 ~---~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~ 365 (565)
+ ...|...+..--..+ ..+.+..+|++.... .+-+...|...+..+...|+.++|. ++|++.... ++
T Consensus 298 ~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P 375 (679)
T 4e6h_A 298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IP 375 (679)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CC
Confidence 0 134444444322222 123345567777654 2346778888888888888888886 999988764 34
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCC------------CHHHHHHHHHHHHHcCCHHHHHH
Q 008454 366 PNVVTYNTLINGYGQVGNSEMGASLYEEMLRNG---------IKV------------DILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 366 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~~------------~~~~~~~li~~~~~~g~~~~A~~ 424 (565)
.+...|...+...-+.|+++.|..+|+.+.+.. ..| ...+|...+....+.|..+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 566667778888888999999999999887631 012 13467778888888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 425 LVKDLDKNSLVPNASTYSALITGQCVR-KNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC 503 (565)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 503 (565)
+|..+.+.........|...+..-.+. ++.+.|.++|+..++. ++-+...+...+......|+.+.|..+|++.+...
T Consensus 456 vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 456 IFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999998751111233443333332333 4589999999999987 45566677788888888899999999999998864
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhc
Q 008454 504 MAP--DSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCA 553 (565)
Q Consensus 504 ~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 553 (565)
..+ ....|...+..-.+.|+.+.+.++.+++.+.- |+......++.-|
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 322 34578888888888999999999999998763 4444444444433
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=7.4e-13 Score=132.32 Aligned_cols=235 Identities=14% Similarity=0.011 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHC----CC-CCCHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPII----ESCNKFLSSLLDSERVDIALGFYKEMRRN----RI-SPNVY 264 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~ 264 (565)
..+..+...+...|++++|+..|+++.+.+.. +. .++..+...+...|++++|+..|++..+. +- .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34556778899999999999999999887543 33 57889999999999999999999987652 11 22346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCC-----------------hhHHHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESM----GF-IPSVTTYNTLISGHCNKGL-----------------LSLAMKFKN 322 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~ 322 (565)
.+..+...|...|++++|...+++..+. +- .....++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888889999999999999999987654 11 1234577888899999999 888888887
Q ss_pred HHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 323 LMEKN----GI-QPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV-SPN----VVTYNTLINGYGQVGNSEMGASLYE 392 (565)
Q Consensus 323 ~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 392 (565)
+..+. +. .....++..+...|...|++++|++.+++..+... ..+ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 11 11234666777788888888888888877654310 011 1245556666666666666666666
Q ss_pred HHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 393 EMLRNGIK-----VDILTYNALILGLCKEGKTKKAAYLVKDL 429 (565)
Q Consensus 393 ~m~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (565)
+..+.... ....++..+...|...|++++|...+++.
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55432100 01234444555555555555555555544
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=2.2e-12 Score=128.42 Aligned_cols=277 Identities=15% Similarity=0.051 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-C
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN----VYTLNMVMHAFCKLGIIERAVEVFKNMESM----GFIP-S 297 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~ 297 (565)
....+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4445555566666666666666666666554211 2 234555556666666666666666654322 1111 1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCC--------------------HHHH
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ-PN----VITFNTLIFGFCKKGK--------------------LHEA 352 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~A 352 (565)
..++..+...+...|++++|...+++..+.... .+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 334444555555555555555555555443100 01 2234444445555555 4445
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 353 NRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIK-VDILTYNALILGLCKEGKTKKAAYLVKDLDK 431 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 431 (565)
.+.+++..... .+.+.. ....++..+...|...|++++|...+++..+
T Consensus 167 ~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 167 VDFYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444433210 000100 0122344445555555555555555554432
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 432 NSL-VPN----ASTYSALITGQCVRKNSERAFQLYKSMIRSGC-RPN----KHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 432 ~~~-~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
... .++ ...+..+...+...|++++|...+++.++... ..+ ..++..+...+...|++++|...++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 100 011 12445555555555555555555555543210 001 33455555555666666666666655543
Q ss_pred cCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 502 KCMA-PD----SIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 502 ~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
.... .+ ..++..+...|...|++++|.+.+++..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2100 01 2345555556666666666666665543
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=4.9e-12 Score=122.07 Aligned_cols=134 Identities=16% Similarity=0.063 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----H
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSL-VPN----ASTYSALITGQCVRKNSERAFQLYKSMIRSGC-RPN----K 473 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~ 473 (565)
..+..+...+...|++++|...+++..+... .++ ...+..+...+...|++++|...+++.++... ..+ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3556666666777777777777766543210 011 22566777777778888888888777765310 011 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEKC----MA-PDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.++..+...+...|++++|...++++.+.. .. ....++..+...|.+.|++++|.+.+++..+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 566777778888888888888888776531 11 11346777888888888888888888887654
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=4.9e-12 Score=122.08 Aligned_cols=276 Identities=12% Similarity=-0.004 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCC-CCHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI----IESCNKFLSSLLDSERVDIALGFYKEMRRN----RIS-PNVYT 265 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~-p~~~~ 265 (565)
.+......+...|++++|+..|+++.+.+.. + ...+..+...+...|++++|.+.+++..+. +.. .....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3445667788888999999999888776433 3 466778888888888888888888776432 111 12445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hhHHHHH
Q 008454 266 LNMVMHAFCKLGIIERAVEVFKNMESMGF-IPS----VTTYNTLISGHCNKGL--------------------LSLAMKF 320 (565)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~ 320 (565)
+..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66666677777777777777766543210 011 2345555566666666 5555555
Q ss_pred HHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 321 KNLMEKN----GIQ-PNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEML 395 (565)
Q Consensus 321 ~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 395 (565)
+++.... +.. ....++..+...+...|++++|.+.+++..+...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------------------------- 214 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK------------------------------- 214 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------------------------------
Confidence 5443321 100 0122344444444455555555555444432100
Q ss_pred HCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 008454 396 RNGI-KVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV-PN----ASTYSALITGQCVRKNSERAFQLYKSMIRS-- 467 (565)
Q Consensus 396 ~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-- 467 (565)
..+. .....++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...++++++.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 0000 001224455555555555555555555554321100 01 334556666666666666666666666542
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 468 --GC-RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 468 --~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
+- .....++..+...+.+.|++++|...++++.+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 10 011335666677777777777777777777654
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=2.8e-11 Score=119.73 Aligned_cols=230 Identities=12% Similarity=-0.016 Sum_probs=147.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC----CCCHHHHH
Q 008454 304 LISGHCNKGLLSLAMKFKNLMEKN----GIQP-NVITFNTLIFGFCKKGKLHEANRIFSEMKAT--NV----SPNVVTYN 372 (565)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~----~~~~~~~~ 372 (565)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|++.+++..+. .. .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344556667777777777766543 1111 2345666677777777777777777766542 10 01124566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 008454 373 TLINGYGQVGNSEMGASLYEEMLRN----GIK-VDILTYNALILGLCKEGKTKKAAYLVKDLDK-----NSLVPNASTYS 442 (565)
Q Consensus 373 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 442 (565)
.+...|...|++++|...+++..+. +.. ....++..+...|...|++++|...+++..+ ........++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6777777777888777777776643 111 1124677778888888888888888887765 22122355677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 008454 443 ALITGQCVRKNSERAFQLYKSMIRS----GCRPNKHIFEMLMSTFCQNED---FDRAAEVLLEMLEKCMAPD-SIILSEL 514 (565)
Q Consensus 443 ~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 514 (565)
.+...+...|++++|...+++.++. +-+.....+..+...+...|+ +++|..++++. +..++ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 7888888888888888888877653 111112335667777777888 66666666655 22222 3466778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 008454 515 YSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 515 i~~~~~~g~~~~A~~~~~~m~~ 536 (565)
...|...|++++|.+.+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888889999999988888754
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=4.4e-11 Score=104.73 Aligned_cols=165 Identities=15% Similarity=0.070 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILG 412 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 412 (565)
...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3344444444444444444444444444332 223334444444444444444444444444433221 33334444444
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 492 (565)
+...++++.|...+.+..+.... +...+..+...+...|++++|++.|++.++.. +.+..+|..+..++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 44444444444444444333221 33344444444444444444444444444432 22334444444444444444444
Q ss_pred HHHHHHHHH
Q 008454 493 AEVLLEMLE 501 (565)
Q Consensus 493 ~~~~~~~~~ 501 (565)
.+.|+++++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=3.4e-10 Score=108.19 Aligned_cols=217 Identities=9% Similarity=-0.028 Sum_probs=145.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHH-
Q 008454 157 KSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAH-------RKKF-------RNATDTFCQMRD- 221 (565)
Q Consensus 157 ~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~- 221 (565)
++|..+++++++. .|.++.+|..++..+.. .|++ ++|+.+|++..+
T Consensus 33 ~~a~~~~~~al~~-------------------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~ 93 (308)
T 2ond_A 33 KRVMFAYEQCLLV-------------------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 93 (308)
T ss_dssp HHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-------------------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH
Confidence 5677777777776 56688888888887763 4775 888888888887
Q ss_pred CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008454 222 YGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN-VY-TLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVT 299 (565)
Q Consensus 222 ~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 299 (565)
.... +...|..++..+.+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|.++|++..+... .+..
T Consensus 94 ~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~ 169 (308)
T 2ond_A 94 LLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHH 169 (308)
T ss_dssp TTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTH
T ss_pred hCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHH
Confidence 3432 6678888888888888888888888888764 333 33 677777777788888888888888776542 2334
Q ss_pred HHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHH
Q 008454 300 TYNTLISGHC-NKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN-VSP--NVVTYNTLI 375 (565)
Q Consensus 300 ~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~li 375 (565)
.|........ ..|++++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..... ++| ....|..++
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4433332222 2577777777777666542 2256666666677777777777777777766642 233 345566666
Q ss_pred HHHHhcCChHHHHHHHHHHHHC
Q 008454 376 NGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
....+.|+.+.|..+++++.+.
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666667777777776666654
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=3.6e-10 Score=107.95 Aligned_cols=185 Identities=12% Similarity=0.110 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 350 HEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDIL-TYNALILGLCKEGKTKKAAYLVKD 428 (565)
Q Consensus 350 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 428 (565)
++|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+++.+.... +.. +|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 555555555554211223344555555555555555555555555553211 122 555555555555566666666665
Q ss_pred HHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 008454 429 LDKNSLVPNASTYSALITGQC-VRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC-MAP 506 (565)
Q Consensus 429 ~~~~~~~p~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p 506 (565)
..+.... +...|........ ..|+.++|..+|+++++.. +-+...|..++..+.+.|++++|..+|+++++.. +.|
T Consensus 160 a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 5554321 2333332222211 2466666666666665542 3345555555555666666666666666665542 233
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 507 --DSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 507 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
....|..++..+.+.|+.++|..+++++.+.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2445555555556666666666666665543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=2.4e-11 Score=120.11 Aligned_cols=298 Identities=11% Similarity=-0.001 Sum_probs=208.1
Q ss_pred HHhcCChHHHHHHHHHHHHC--CC--CcCHHHHHHHHHHH--HcCCChHHHH-----------HHHHHHHHCCCCCC---
Q 008454 203 YAHRKKFRNATDTFCQMRDY--GF--LPIIESCNKFLSSL--LDSERVDIAL-----------GFYKEMRRNRISPN--- 262 (565)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~--~~--~p~~~~~~~ll~~~--~~~~~~~~A~-----------~~~~~m~~~~~~p~--- 262 (565)
+.+.+++++|..+++++.+. .. .++...|..++..- ...+..+.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45689999999999998664 22 22333334333321 1223333333 66666543211101
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--C----C
Q 008454 263 -VYTLNMVMHAFCKLGIIERAVEVFKNMESM----GFIP-SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNG--I----Q 330 (565)
Q Consensus 263 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~----~ 330 (565)
...+......+...|++++|.+.+++..+. +-.+ ...++..+...|...|++++|...+++..+.. . .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 112223556677899999999999998764 2111 34678889999999999999999999876531 1 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCC
Q 008454 331 PNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV-SPN----VVTYNTLINGYGQVGNSEMGASLYEEMLR-----NGIK 400 (565)
Q Consensus 331 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~ 400 (565)
....+++.+...|...|++++|++.+++..+... ..+ ..++..+...|...|++++|...+++..+ ....
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1245788888999999999999999998775310 111 24688899999999999999999999887 3313
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH
Q 008454 401 VDILTYNALILGLCKEGKTKKAAYLVKDLDKNS----LVPNASTYSALITGQCVRKN---SERAFQLYKSMIRSGCRPNK 473 (565)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~~~p~~ 473 (565)
....++..+...|.+.|++++|...+++..+.. .......+..+...+...|+ +++|+.++++... .+...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~ 339 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLE 339 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHH
Confidence 356789999999999999999999999876531 11112335677788888898 7777777776621 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
..+..+...|...|++++|...+++..+.
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56778899999999999999999988653
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=8.3e-11 Score=102.96 Aligned_cols=171 Identities=14% Similarity=0.085 Sum_probs=151.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 367 NVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALIT 446 (565)
Q Consensus 367 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 446 (565)
+...|..+...|...|++++|+..|++..+.... +..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 5678999999999999999999999999987544 7889999999999999999999999999876544 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008454 447 GQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDEL 526 (565)
Q Consensus 447 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 526 (565)
.+...++++.|...+.+..+.. +-+...+..+...+.+.|++++|++.++++++.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999874 5678889999999999999999999999999874 3467889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCH
Q 008454 527 AMKLFRKMEIRGLLPKG 543 (565)
Q Consensus 527 A~~~~~~m~~~g~~p~~ 543 (565)
|.+.|++..+. .|+.
T Consensus 160 A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHhC--CccC
Confidence 99999999875 3543
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=2.5e-11 Score=123.42 Aligned_cols=212 Identities=11% Similarity=-0.044 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 279 IERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLL-SLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFS 357 (565)
Q Consensus 279 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 357 (565)
++++++.+++..... ..+...+..+...+...|++ ++|.+.+++..+.. +-+...|..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555444332 12556666666666666666 66666666666543 2245666666666666677777777766
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 008454 358 EMKATNVSPNVVTYNTLINGYGQV---------GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKE--------GKTK 420 (565)
Q Consensus 358 ~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~ 420 (565)
+..+. .|+...+..+...+... |++++|...+++..+.... +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66655 34456666666666666 6666666666666655322 455666666666666 6666
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 421 KAAYLVKDLDKNSLV--PNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVL 496 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (565)
+|...|++..+.... -+...|..+...|...|++++|.+.|+++++.. +-+...+..+..++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666554220 155566666666666666666666666666553 334455556666666666666665543
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=1.8e-11 Score=124.40 Aligned_cols=215 Identities=12% Similarity=0.021 Sum_probs=185.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008454 313 LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL-HEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLY 391 (565)
Q Consensus 313 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (565)
.++++...++...... +.+...+..+...+...|++ ++|++.|++..+.. +-+...|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566677777666543 34788899999999999999 99999999998874 456889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCH
Q 008454 392 EEMLRNGIKVDILTYNALILGLCKE---------GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR--------KNS 454 (565)
Q Consensus 392 ~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------~~~ 454 (565)
++..+.. |+...+..+...|... |++++|...++++.+.... +...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999864 6678999999999999 9999999999999887544 688899999999998 999
Q ss_pred HHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 455 ERAFQLYKSMIRSGCR---PNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLF 531 (565)
Q Consensus 455 ~~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 531 (565)
++|++.|+++++.. + -+...|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999874 3 478999999999999999999999999998874 336678888999999999999998866
Q ss_pred HHH
Q 008454 532 RKM 534 (565)
Q Consensus 532 ~~m 534 (565)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=5.4e-12 Score=120.52 Aligned_cols=171 Identities=17% Similarity=0.116 Sum_probs=125.3
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC------
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY-------GFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN------ 257 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------ 257 (565)
....++..+...|...|++++|+..|+++.+. .......++..+...+...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35577888999999999999999999998773 22235677888899999999999999999887653
Q ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--
Q 008454 258 RI-SPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM------GFIP-SVTTYNTLISGHCNKGLLSLAMKFKNLMEKN-- 327 (565)
Q Consensus 258 ~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 327 (565)
+- +....++..+...+...|++++|.+.+++..+. +..| ....+..+...+...|++++|.++++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11 223566777888888888888888888887653 1112 3455667777788888888888888777653
Q ss_pred ----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 328 ----GIQP-NVITFNTLIFGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 328 ----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 361 (565)
+..| ...++..+...|...|++++|.+.++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 244566777778888888888888877764
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=4.7e-11 Score=113.93 Aligned_cols=239 Identities=17% Similarity=0.108 Sum_probs=170.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------C
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLMEKN-------GIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT------N 363 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 363 (565)
+..++..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4677888999999999999999999998873 22334667888899999999999999999988764 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---
Q 008454 364 V-SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN------GI-KVDILTYNALILGLCKEGKTKKAAYLVKDLDKN--- 432 (565)
Q Consensus 364 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 432 (565)
. +.....+..+...+...|++++|...++++.+. +. ......+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 233567888899999999999999999998864 22 224567888999999999999999999998764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 008454 433 ---SLVP-NASTYSALITGQCVRKNSERAFQLYKSMIRS-------GCRPNK-------HIFEMLMSTFCQNEDFDRAAE 494 (565)
Q Consensus 433 ---~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~-------~~~~~li~~~~~~g~~~~A~~ 494 (565)
+..| ....+..+...+...|++++|.+.++++++. ...+.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2122 3457888899999999999999999999863 111111 122223333444555666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 495 VLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
.++..... ...+..++..+..+|.+.|++++|.+.|++..+
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666543 223456788999999999999999999998765
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=9e-09 Score=107.70 Aligned_cols=401 Identities=9% Similarity=0.010 Sum_probs=257.7
Q ss_pred CCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCC-CcCH
Q 008454 153 NRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKK---FRNATDTFCQMRDYGF-LPII 228 (565)
Q Consensus 153 ~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~p~~ 228 (565)
-.+++.-..+++...+.+.+...+.+|+.++.. .|.....|...+..-.+.|+ ++.+.++|++...... .|++
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~---fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR---FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 356777777777776666666667777777765 44566777777887778787 8888888888877542 3678
Q ss_pred HHHHHHHHHHHcCCCh--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHH
Q 008454 229 ESCNKFLSSLLDSERV--------DIALGFYKEMRR-NRI-SPN-VYTLNMVMHAFC---------KLGIIERAVEVFKN 288 (565)
Q Consensus 229 ~~~~~ll~~~~~~~~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~~~---------~~g~~~~a~~~~~~ 288 (565)
..|...+....+.++. +.+.++|+.... .|. .++ ...|...+.... ..++++.+.++|+.
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 8888877766665543 234467766543 455 443 467777665433 23456778888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-------------ChhHHHHHHHHHHH--CCCC---------------C-----C-
Q 008454 289 MESMGFIPSVTTYNTLISGHCNKG-------------LLSLAMKFKNLMEK--NGIQ---------------P-----N- 332 (565)
Q Consensus 289 m~~~g~~p~~~~~~~li~~~~~~g-------------~~~~a~~~~~~m~~--~g~~---------------~-----~- 332 (565)
........-..+|......--..+ +++.|...+.++.. .++. | +
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 775422212344433322211111 12223333333321 1111 0 0
Q ss_pred --HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHCCCCCC
Q 008454 333 --VITFNTLIFGFCKKG-------KLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGA-SLYEEMLRNGIKVD 402 (565)
Q Consensus 333 --~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~ 402 (565)
...|...+..--..+ ..+.+..+|+++... ++-+...|...+..+...|+.++|. .+|++.... ++.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 133444444322222 123456677777665 2456777877888888889999996 999999875 3446
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 403 ILTYNALILGLCKEGKTKKAAYLVKDLDKNS---------LVPN------------ASTYSALITGQCVRKNSERAFQLY 461 (565)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~p~------------~~~~~~li~~~~~~~~~~~A~~~~ 461 (565)
...|...+....+.|++++|..+|+.+.+.. -.|+ ...|...+....+.|+.+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7778888888999999999999999987631 0132 236777788778889999999999
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008454 462 KSMIRS-GCRPNKHIFEMLMSTFCQN-EDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGL 539 (565)
Q Consensus 462 ~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 539 (565)
.++++. + ......|...+..-.+. ++.+.|..+|+..++. .+-+...|...++.....|+.+.|+.+|++......
T Consensus 458 ~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 458 GKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 999876 2 22334443333333333 5589999999999887 455677788889988899999999999999977653
Q ss_pred CC--CHhhHHHHHhhcccCCCcc
Q 008454 540 LP--KGFDKLRTINCAPENGEKE 560 (565)
Q Consensus 540 ~p--~~~~~~~ll~~~~~~g~~~ 560 (565)
.+ ....|...+.-=.+.|+.+
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHH
Confidence 22 2346666666555666654
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=4.7e-10 Score=110.64 Aligned_cols=228 Identities=11% Similarity=0.035 Sum_probs=138.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-C-CCHHHHHH
Q 008454 305 ISGHCNKGLLSLAMKFKNLMEKNGIQ-P----NVITFNTLIFGFCKKGKLHEANRIFSEMKAT----NV-S-PNVVTYNT 373 (565)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~m~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~-~~~~~~~~ 373 (565)
...+...|++++|...+++..+.... + ...++..+...|...|+++.|...+++..+. +. . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 34455666777777766666543100 1 2345566666677777777777776665542 10 0 11345566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 008454 374 LINGYGQVGNSEMGASLYEEMLRN----GIK-VDILTYNALILGLCKEGKTKKAAYLVKDLDK-----NSLVPNASTYSA 443 (565)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 443 (565)
+...|...|++++|...+++..+. +.. ....++..+..+|...|++++|...+++..+ .... ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 666777777777777777666542 111 1234566677777777787777777777665 3322 2556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 008454 444 LITGQCVRKNSERAFQLYKSMIRSG----CRPNKHIFEMLMSTFCQNED---FDRAAEVLLEMLEKCMAPD-SIILSELY 515 (565)
Q Consensus 444 li~~~~~~~~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~li 515 (565)
+...+.+.|++++|...+++.++.. -+.....+..+...+...++ +++|..++++. +..++ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 7777888888888888888777641 11123345555556666677 66666666542 22222 23566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 008454 516 SGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 516 ~~~~~~g~~~~A~~~~~~m~~ 536 (565)
..|...|++++|.+.|++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888888887653
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=7.6e-10 Score=109.09 Aligned_cols=306 Identities=9% Similarity=0.018 Sum_probs=211.9
Q ss_pred ChHHHHHHHHHH--HhcCChHHHHHHHHHHHHC--CC--CcCHHHHHHHHHHH--HcCCChHHHH---------HHHHHH
Q 008454 192 SPLVFDLLFKTY--AHRKKFRNATDTFCQMRDY--GF--LPIIESCNKFLSSL--LDSERVDIAL---------GFYKEM 254 (565)
Q Consensus 192 ~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~--~~--~p~~~~~~~ll~~~--~~~~~~~~A~---------~~~~~m 254 (565)
+..+-+.|-..| .+.+++++|.++++++... .. ..++..|-.++..- .-.+....+. +.++.+
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 455566666677 7899999999999987553 22 22344444444321 1112222222 555555
Q ss_pred HHCCCCCC--H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008454 255 RRNRISPN--V--YTLNMVMHAFCKLGIIERAVEVFKNMESMGF-IPS----VTTYNTLISGHCNKGLLSLAMKFKNLME 325 (565)
Q Consensus 255 ~~~~~~p~--~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 325 (565)
.....+.+ . ..+......+...|++++|+..+++..+... .++ ..++..+...|...|+++.|...+++..
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 43211101 1 1233344556789999999999999876411 122 4577888899999999999999998876
Q ss_pred HC----CC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 326 KN----GI-Q-PNVITFNTLIFGFCKKGKLHEANRIFSEMKAT----NVS-PNVVTYNTLINGYGQVGNSEMGASLYEEM 394 (565)
Q Consensus 326 ~~----g~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 394 (565)
+. +. . ....+++.+...|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|...+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 43 11 1 12557788899999999999999999987653 111 12356778899999999999999999998
Q ss_pred HH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHH
Q 008454 395 LR-----NGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL---VP-NASTYSALITGQCVRKN---SERAFQLYK 462 (565)
Q Consensus 395 ~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~li~~~~~~~~---~~~A~~~~~ 462 (565)
.+ .... ...++..+...|.+.|++++|...+++..+... .+ ....+..+...+...++ +++|+..++
T Consensus 249 l~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 249 AKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 87 4433 377889999999999999999999999876321 12 23356666667777888 777777777
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 463 SMIRSGCRP-NKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 463 ~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
+. +..+ ....+..+...|...|++++|...+++..+
T Consensus 328 ~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 328 KK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 63 2222 235667888999999999999999998865
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=2.1e-09 Score=105.69 Aligned_cols=199 Identities=13% Similarity=0.030 Sum_probs=100.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHH
Q 008454 303 TLISGHCNKGLLSLAMKFKNLMEKN----GIQ--P-NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVS----PNVVTY 371 (565)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~ 371 (565)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... .....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 3444455555555555555544321 111 1 1233444455555566666666666555432111 012344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHH
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKV--DILTYN----ALILGLCKEGKTKKAAYLVKDLDKNSLVP---NASTYS 442 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~ 442 (565)
..+...+...|++++|...+++.......+ ...... ..+..+...|++++|...+++.......+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 455555566666666666666554321111 111111 22233556677777766666655432211 122445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 443 ALITGQCVRKNSERAFQLYKSMIRS----GCRPNK-HIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 443 ~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
.+...+...|++++|...++++... |..++. .++..+..++...|+.++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5666667777777777777766542 211122 2455556667777788777777777654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=1.6e-09 Score=106.46 Aligned_cols=290 Identities=11% Similarity=-0.029 Sum_probs=196.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHH
Q 008454 269 VMHAFCKLGIIERAVEVFKNMESMGFIPSV----TTYNTLISGHCNKGLLSLAMKFKNLMEKN----GIQ-PNVITFNTL 339 (565)
Q Consensus 269 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~l 339 (565)
....+...|++++|...+++........+. ..++.+...+...|++++|...+++.... |.. ....++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 334455677788887777776654322222 24555667777888888888888776542 211 012345667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHHHH
Q 008454 340 IFGFCKKGKLHEANRIFSEMKAT----NVS--P-NVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIK----VDILTYNA 408 (565)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~ 408 (565)
...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 78899999999999999987653 221 2 2345667888899999999999999998764221 12467888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 008454 409 LILGLCKEGKTKKAAYLVKDLDKNSLVPN--ASTYS----ALITGQCVRKNSERAFQLYKSMIRSGCRP---NKHIFEML 479 (565)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~----~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l 479 (565)
+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 89999999999999999998865311111 11111 23344778999999999999987643211 13356777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC----CCHhhH
Q 008454 480 MSTFCQNEDFDRAAEVLLEMLEK----CMAPDS-IILSELYSGLHHCGKDELAMKLFRKMEIR----GLL----PKGFDK 546 (565)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~----p~~~~~ 546 (565)
...+...|++++|...++++.+. +..++. ..+..+..++...|+.++|...+++..+. |.. ......
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g~~~ 339 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 339 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHccHHH
Confidence 88899999999999999988653 222222 36667788899999999999999887543 322 123344
Q ss_pred HHHHhhcccCCC
Q 008454 547 LRTINCAPENGE 558 (565)
Q Consensus 547 ~~ll~~~~~~g~ 558 (565)
..++..+...+.
T Consensus 340 ~~ll~~~~~~~~ 351 (373)
T 1hz4_A 340 AQQLRQLIQLNT 351 (373)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhCCC
Confidence 555555555444
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=6.5e-10 Score=96.84 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR 451 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (565)
..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh
Confidence 3344444444555555554444443321 2344455555555555555555555555544322 1444555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 452 KNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLF 531 (565)
Q Consensus 452 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 531 (565)
|++++|.+.++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666665555542 3445555555666666666666666666665542 224555666666666666666666666
Q ss_pred HHHHH
Q 008454 532 RKMEI 536 (565)
Q Consensus 532 ~~m~~ 536 (565)
++..+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=7.4e-10 Score=96.48 Aligned_cols=165 Identities=14% Similarity=0.091 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGL 413 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (565)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 344555556666666666666666655442 33455566666666666666666666666665432 2556666666667
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAA 493 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 493 (565)
...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777776665432 255666667777777777777777777776653 445666777777777777777777
Q ss_pred HHHHHHHHc
Q 008454 494 EVLLEMLEK 502 (565)
Q Consensus 494 ~~~~~~~~~ 502 (565)
..++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 777776553
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=2.4e-10 Score=120.98 Aligned_cols=169 Identities=11% Similarity=0.053 Sum_probs=149.9
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNM 268 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (565)
+|.++.+|+.|...|.+.|++++|++.|++..+.... +..+|+.+..+|.+.|++++|+..|++..+.. +-+...|+.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 5667889999999999999999999999999987644 68999999999999999999999999998864 236889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 269 VMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK 348 (565)
Q Consensus 269 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 348 (565)
+..++.+.|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.+++..+... -+...+..+..++...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhccc
Confidence 999999999999999999999886533 688999999999999999999999999988643 368889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 008454 349 LHEANRIFSEMKA 361 (565)
Q Consensus 349 ~~~A~~~~~~m~~ 361 (565)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887754
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=5.6e-10 Score=118.19 Aligned_cols=165 Identities=15% Similarity=0.063 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILG 412 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 412 (565)
..+|+.+...|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|+..|++.++.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4555666666666666666666666655542 234455666666666666666666666666554322 45566666666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 492 (565)
|.+.|++++|++.|++..+.+.. +...|+.+...|...|++++|++.|+++++.. +-+...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 66666666666666666554332 45566666666666666666666666666653 33455666666666666666666
Q ss_pred HHHHHHHHH
Q 008454 493 AEVLLEMLE 501 (565)
Q Consensus 493 ~~~~~~~~~ 501 (565)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=4.6e-09 Score=95.32 Aligned_cols=133 Identities=14% Similarity=-0.013 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLIN 376 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 376 (565)
|...+......+...|++++|...|++..+....++...+..+..++...|++++|++.+++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3455555555566666666666666665554332445555555555666666666666666555542 223445555555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 377 GYGQVGNSEMGASLYEEMLRNGIKVDI-------LTYNALILGLCKEGKTKKAAYLVKDLDK 431 (565)
Q Consensus 377 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 431 (565)
.+...|++++|...+++..+.... +. ..|..+...+...|++++|...|+++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 555666666666666655554221 22 2344455555555555555555555544
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.16 E-value=5.1e-09 Score=95.01 Aligned_cols=202 Identities=12% Similarity=-0.018 Sum_probs=156.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 331 PNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALI 410 (565)
Q Consensus 331 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 410 (565)
.|+..+......+.+.|++++|++.|++..+....++...+..+..++...|++++|...+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3667888889999999999999999999988753367788888999999999999999999999987544 677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVPNA-------STYSALITGQCVRKNSERAFQLYKSMIRSGCRPN---KHIFEMLM 480 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li 480 (565)
..|...|++++|...+++..+.... +. ..|..+...+...|++++|++.|+++++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999886433 44 45788888889999999999999999976 454 46677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 008454 481 STFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDK 546 (565)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 546 (565)
.++... +..+++++...+ ..+...|.... ....|.+++|...+++..+.. |+....
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~--p~~~~~ 216 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS--PNRTEI 216 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CCCHHH
Confidence 777544 444556665543 22344444443 344567899999999998763 554433
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=5e-10 Score=104.95 Aligned_cols=228 Identities=17% Similarity=0.088 Sum_probs=157.5
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 008454 309 CNKGLLSLAMKFKNLMEKN-------GIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT------NV-SPNVVTYNTL 374 (565)
Q Consensus 309 ~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~l 374 (565)
...|++++|..++++..+. ..+....++..+...|...|++++|+..++++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4467777777777766542 22234677888999999999999999999998754 21 2235678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHH
Q 008454 375 INGYGQVGNSEMGASLYEEMLRN------G-IKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN------SLVP-NAST 440 (565)
Q Consensus 375 i~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~ 440 (565)
...+...|++++|...++++.+. . ......++..+...|...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1224677888999999999999999999998764 1122 3457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCC
Q 008454 441 YSALITGQCVRKNSERAFQLYKSMIRS-------GCRPN-KHIFEMLMSTFCQNED------FDRAAEVLLEMLEKCMAP 506 (565)
Q Consensus 441 ~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~p 506 (565)
+..+...+...|++++|..+++++++. ...+. ...+..+.......+. +..+...++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999999864 11122 2233333333333222 2222222221111 1122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 507 DSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 507 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
...++..+...|...|++++|.+++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999987653
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=6.5e-10 Score=104.20 Aligned_cols=227 Identities=17% Similarity=0.044 Sum_probs=157.7
Q ss_pred HcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 008454 275 KLGIIERAVEVFKNMESM-------GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN------GI-QPNVITFNTLI 340 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li 340 (565)
..|++++|+..+++..+. .......++..+...|...|++++|...+++..+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 567777777777766542 22234677888999999999999999999998754 22 22456788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 008454 341 FGFCKKGKLHEANRIFSEMKAT------N-VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN------GIKV-DILTY 406 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~-~~~~~ 406 (565)
..|...|++++|.+.+++..+. . .+.....+..+...+...|++++|...++++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998764 1 1233567888999999999999999999998875 1122 35678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCC
Q 008454 407 NALILGLCKEGKTKKAAYLVKDLDKN-------SLVP-NASTYSALITGQCVRKN------SERAFQLYKSMIRSGCRPN 472 (565)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~p-~~~~~~~li~~~~~~~~------~~~A~~~~~~m~~~~~~p~ 472 (565)
..+...|...|++++|...++++.+. ...+ ....|..+...+...+. +..+...++..... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 89999999999999999999998753 1111 12233333333332222 22333333222111 1223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 473 KHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
..++..+...+...|++++|..++++.++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457888999999999999999999988763
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.09 E-value=2.7e-08 Score=92.56 Aligned_cols=244 Identities=12% Similarity=0.011 Sum_probs=155.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGII 279 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 279 (565)
++-..-.|.+..++.-..++.. ......-..+.+++...|+++.. ..-.|....+..+...+ . ++
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~-~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-D-TK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-T-TT-
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-c-cc-
Confidence 4555667888888874433322 22334444456778877776642 12234444444444333 2 22
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 280 ERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGI-QPNVITFNTLIFGFCKKGKLHEANRIFSE 358 (565)
Q Consensus 280 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 358 (565)
|+..++++.+.+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777776654 44566666777888888888888888888776653 12567777788888888888888888888
Q ss_pred HHhCCCCC-----CHHHHHHHHHHHH--hcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 359 MKATNVSP-----NVVTYNTLINGYG--QVG--NSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDL 429 (565)
Q Consensus 359 m~~~~~~~-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (565)
|.+. .| +..+...+..++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|...++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8775 44 2455555655533 223 788888888888665 244333344444778888888888888766
Q ss_pred HhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 430 DKNS---------LVPNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 430 ~~~~---------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
.+.. -.-+..++..+|......|+ +|.+++.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 5421 01255566455555555665 777888888775
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=1.7e-08 Score=95.38 Aligned_cols=68 Identities=18% Similarity=0.094 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 008454 208 KFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN----RISPN-VYTLNMVMHAFCKLGIIERA 282 (565)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a 282 (565)
++++|.+.|++. ...|...|++++|...|++..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666655 23455566666666666665431 11111 34555566666666666666
Q ss_pred HHHHHHHH
Q 008454 283 VEVFKNME 290 (565)
Q Consensus 283 ~~~~~~m~ 290 (565)
+..+++..
T Consensus 97 ~~~~~~Al 104 (292)
T 1qqe_A 97 VDSLENAI 104 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=4.6e-08 Score=90.97 Aligned_cols=179 Identities=9% Similarity=0.042 Sum_probs=84.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 352 ANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGI-KVDILTYNALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 352 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
|+..|++....+ .++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444455444433 23333444555555555555555555555544432 1234455555555555556666655555554
Q ss_pred hCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 431 KNSLVP-----NASTYSALITGQ--CVRK--NSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 431 ~~~~~p-----~~~~~~~li~~~--~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
+. .| +..+...|+.++ ...| ++++|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 23 123333333331 1122 555666666665443 34322223333355555666666666654433
Q ss_pred cC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 502 KC---------MAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 502 ~~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.. -+-+..++..+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 02234444344444444454 555555555443
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=2.8e-08 Score=81.09 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
.+..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3445555666666666666666666554322 45556666666666666666666666666553 344556666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 485 QNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
..|++++|.++++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6777777777776666542 224556666666777777777777777766543
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=2.3e-08 Score=94.46 Aligned_cols=205 Identities=15% Similarity=0.013 Sum_probs=126.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHH
Q 008454 313 LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT----NVSPN-VVTYNTLINGYGQVGNSEMG 387 (565)
Q Consensus 313 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A 387 (565)
++++|...+++. ...|...|++++|.+.|++..+. |..++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 33455667777777777665442 21111 34666777777777777777
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 008454 388 ASLYEEMLRN----GIKV-DILTYNALILGLCKE-GKTKKAAYLVKDLDKNSLVP-N----ASTYSALITGQCVRKNSER 456 (565)
Q Consensus 388 ~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~~~~~~ 456 (565)
...+++..+. |... -..+++.+...|... |++++|+..|++..+..... + ..+|..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7777766543 1110 134677777778775 88888888888775531110 1 3457777888888888888
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--hcC
Q 008454 457 AFQLYKSMIRSGCRPNK------HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDS------IILSELYSGLH--HCG 522 (565)
Q Consensus 457 A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~li~~~~--~~g 522 (565)
|+..|+++++....... ..|..+..++...|++++|...+++.++. .|+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 88888888875322111 14666777778888888888888887653 2221 13444555554 356
Q ss_pred CHHHHHHHHHHH
Q 008454 523 KDELAMKLFRKM 534 (565)
Q Consensus 523 ~~~~A~~~~~~m 534 (565)
++++|+..|+++
T Consensus 255 ~~~~A~~~~~~~ 266 (292)
T 1qqe_A 255 QLSEHCKEFDNF 266 (292)
T ss_dssp THHHHHHHHTTS
T ss_pred HHHHHHHHhccC
Confidence 677777777665
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.98 E-value=4.7e-06 Score=84.46 Aligned_cols=345 Identities=12% Similarity=0.012 Sum_probs=197.9
Q ss_pred CCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCC-hHHHHHHHHHHHHC-CCCc-CHHH
Q 008454 154 RKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKK-FRNATDTFCQMRDY-GFLP-IIES 230 (565)
Q Consensus 154 ~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-~~~p-~~~~ 230 (565)
++++.+..+|++.+.. + |+..+|...+....+.++ .+....+|+..... |..+ +...
T Consensus 28 ~~~e~~~~iferal~~-------------------~-ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK-------------------S-YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp TCHHHHHHHHHHHSTT-------------------C-CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred CCHHHHHHHHHHHhcc-------------------C-CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 5566666666666654 2 144455555544444442 34455556655442 3222 4556
Q ss_pred HHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHhCC
Q 008454 231 CNKFLSSLLD----SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC-------------KLGIIERAVEVFKNMESMG 293 (565)
Q Consensus 231 ~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-------------~~g~~~~a~~~~~~m~~~g 293 (565)
|...+..+.. .++.+.+..+|++........-...|......-. ..+.+..|..+++++...-
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6665555432 2445566666666655211101112221111100 1122333444444443210
Q ss_pred CCCCHHHHHHHHHHHHhcC--C-----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 294 FIPSVTTYNTLISGHCNKG--L-----LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSP 366 (565)
Q Consensus 294 ~~p~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 366 (565)
...+...|...+..-...+ - .+.+..+++++.... +-+...|...+..+.+.|+.++|..++++.... +.
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~ 244 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SD 244 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CC
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC
Confidence 0013445655554432221 1 244667888888753 446788888888889999999999999999887 33
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 367 NVVTYNTLINGYGQVGNSEMGASLYEEMLRNG---------I---KVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL 434 (565)
Q Consensus 367 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (565)
+...+. .|....+.++. ++.+.+.- . ......|...+..+.+.+..+.|..+|+.+ .. .
T Consensus 245 ~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~ 315 (493)
T 2uy1_A 245 GMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E 315 (493)
T ss_dssp SSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S
T ss_pred cHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C
Confidence 333322 22222222222 22222210 0 111345677777777788999999999999 32 1
Q ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008454 435 VPNASTYSALITGQCV-RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSE 513 (565)
Q Consensus 435 ~p~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 513 (565)
..+...|......-.. .++.+.|..+|+..++.- +-+...+...++...+.|+.+.|..+|+++. .....|..
T Consensus 316 ~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~ 389 (493)
T 2uy1_A 316 GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDS 389 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHH
Confidence 2344555433322222 346999999999999863 3345556667777788999999999999873 25778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 008454 514 LYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 514 li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
.+..-...|+.+.+..+++++.+
T Consensus 390 ~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888999999999998764
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=4.6e-08 Score=79.75 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR 451 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (565)
..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|...++++.+.+.. +...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHh
Confidence 3344444444444444444444444321 13444444445555555555555555554443221 344455555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 452 KNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 452 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555442 23444555555555555666666555555544
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=4e-08 Score=91.14 Aligned_cols=184 Identities=13% Similarity=0.057 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHH
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN---VITFNTLIFGFCKKGKLHEANRIFSEMKATNV--SPNVVTY 371 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~ 371 (565)
+...+..+...+.+.|++++|...|+++.+.... + ...+..+..+|.+.|++++|+..|+.+.+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3444445555555666666666666665554211 2 34455555556666666666666665555310 1112334
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008454 372 NTLINGYGQ--------VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSA 443 (565)
Q Consensus 372 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 443 (565)
..+..++.. .|++++|...|+++.+.... +......+.. +..+... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 444555555 55555555555555543211 1111111100 0000000 0011345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 008454 444 LITGQCVRKNSERAFQLYKSMIRSGCRPN----KHIFEMLMSTFCQN----------EDFDRAAEVLLEMLEK 502 (565)
Q Consensus 444 li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~ 502 (565)
+...|...|++++|+..|+++++.. |+ ...+..+..++... |++++|...++++++.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5666677777777777777777652 32 34555666666654 6777777777777664
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=6.9e-07 Score=83.91 Aligned_cols=226 Identities=10% Similarity=-0.046 Sum_probs=154.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----H
Q 008454 201 KTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSE--RVDIALGFYKEMRRNRISPNVYTLNMVMHAF----C 274 (565)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~ 274 (565)
....+....++|+++++.+...+.. +..+|+.-...+...+ ++++++++++.+.....+ +..+|+.--..+ .
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 3333444557899999999887754 6788888888888888 899999999998876433 455565444444 4
Q ss_pred Hc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-
Q 008454 275 KL---GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLS--LAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK- 348 (565)
Q Consensus 275 ~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~- 348 (565)
.. +++++++++++++.+...+ +-.+|+.-.-.+.+.|.++ ++++.++++.+.... |..+|+.....+.+.|.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG
T ss_pred hccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 44 6788888888888876544 7777877777777778777 888888888876543 77777776666666665
Q ss_pred -----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHH
Q 008454 349 -----LHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEM-GASLYEEMLRNG--IKVDILTYNALILGLCKEGKTK 420 (565)
Q Consensus 349 -----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~ 420 (565)
++++++.++.+.... +-|...|+.+...+.+.|+... +..+..++.+.+ -..+...+..++..|.+.|+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 777777777776654 4566677766666666665333 444544444322 1235566666777777777777
Q ss_pred HHHHHHHHHHh
Q 008454 421 KAAYLVKDLDK 431 (565)
Q Consensus 421 ~A~~~~~~~~~ 431 (565)
+|.++++.+.+
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777664
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=2.6e-08 Score=92.44 Aligned_cols=213 Identities=10% Similarity=-0.025 Sum_probs=133.3
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC-CCC-H
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI---IESCNKFLSSLLDSERVDIALGFYKEMRRNRI-SPN-V 263 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~ 263 (565)
.+.++..+..+...+.+.|++++|+..|+++.+.... + ..++..+..++.+.|++++|+..|+...+... .+. .
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3456777888889999999999999999999886533 3 67888899999999999999999999987532 122 4
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 008454 264 YTLNMVMHAFCK--------LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVIT 335 (565)
Q Consensus 264 ~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 335 (565)
..+..+..++.. .|++++|+..|+++.+.... +......+ ..+..+... -...
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~--------------~~~~~~~~~----~~~~ 150 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDAT--------------QKIRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHH--------------HHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHH--------------HHHHHHHHH----HHHH
Confidence 567777788888 89999999999998875322 22222111 001111000 0112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCC-
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATNVS--PNVVTYNTLINGYGQV----------GNSEMGASLYEEMLRNGIKVD- 402 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~- 402 (565)
+..+...|.+.|++++|+..|+.+.+.... .....+..+..+|... |++++|...|+++.+......
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 344556666677777777777766654211 1233455555666544 666777777777666432211
Q ss_pred -HHHHHHHHHHHHHcCCHHH
Q 008454 403 -ILTYNALILGLCKEGKTKK 421 (565)
Q Consensus 403 -~~~~~~li~~~~~~g~~~~ 421 (565)
......+...+...+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 2334444444444444443
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.94 E-value=7.4e-07 Score=83.69 Aligned_cols=221 Identities=8% Similarity=-0.040 Sum_probs=176.4
Q ss_pred CCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCcCHHHH
Q 008454 154 RKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRK--KFRNATDTFCQMRDYGFLPIIESC 231 (565)
Q Consensus 154 ~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~ 231 (565)
...++|+.+.+.++.. .|....+|+.-...+...| +++++++.++.+...+.+ +..+|
T Consensus 47 e~s~~aL~~t~~~L~~-------------------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW 106 (306)
T 3dra_A 47 EYSERALHITELGINE-------------------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIW 106 (306)
T ss_dssp CCSHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHH
T ss_pred CCCHHHHHHHHHHHHH-------------------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHH
Confidence 3445788888888776 4556777888888888888 999999999999987765 67777
Q ss_pred HHHHHHH----HcC---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHHHHH
Q 008454 232 NKFLSSL----LDS---ERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIE--RAVEVFKNMESMGFIPSVTTYN 302 (565)
Q Consensus 232 ~~ll~~~----~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~ 302 (565)
+.-...+ ... +++++++++++.+.+.. +-|-.+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~ 184 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWS 184 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHH
Confidence 7766666 555 78999999999998865 348888888888888889888 999999999987655 888888
Q ss_pred HHHHHHHhcCC------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhCC--CCCCHHHHHH
Q 008454 303 TLISGHCNKGL------LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHE-ANRIFSEMKATN--VSPNVVTYNT 373 (565)
Q Consensus 303 ~li~~~~~~g~------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~~~~~~~ 373 (565)
.-...+.+.|. ++++++.++.+..... -|...|+-+-..+.+.|+..+ +....+++.+.+ -..+...+..
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~ 263 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALET 263 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHH
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence 87777777776 8899999999888754 488999988888888887444 555666555432 2457788889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 008454 374 LINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
+...+.+.|+.++|.++++.+.+.
T Consensus 264 la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 264 LAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHccCCHHHHHHHHHHHHhc
Confidence 999999999999999999999874
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=5.6e-08 Score=86.70 Aligned_cols=130 Identities=13% Similarity=0.060 Sum_probs=63.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008454 374 LINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKN 453 (565)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 453 (565)
+..++.+.|++++|...|++..+.... +...+..+..++...|++++|...|+++.+.... +...|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 555555666666666666665554322 4555555666666666666666666665554332 44555555555544332
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 008454 454 --SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSI 509 (565)
Q Consensus 454 --~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 509 (565)
.+.+...++.... ..|....+.....++...|++++|...|+++++. .|+..
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 2233334433321 1111222223333444556666666666666553 34443
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=1.7e-07 Score=83.74 Aligned_cols=163 Identities=7% Similarity=-0.114 Sum_probs=112.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC----ChHHHHHHHHHHHHCCCCCCHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSE----RVDIALGFYKEMRRNRISPNVYTLN 267 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----~~~~A~~~~~~m~~~~~~p~~~~~~ 267 (565)
++.++..|...|...+++++|++.|++..+.| +..++..+...|.. + ++++|...|+...+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 66777778888888888888888888887765 56777777777776 5 7888888888877654 566666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 268 MVMHAFCK----LGIIERAVEVFKNMESMGFI-PSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNGIQPNVITFNT 338 (565)
Q Consensus 268 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 338 (565)
.+...|.. .+++++|++.|++..+.|.. -+...+..|...|.. .+++++|..++++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 66666665 67777888777777766521 015666667677766 667777777777776651 23445555
Q ss_pred HHHHHHHc-C-----CHHHHHHHHHHHHhCC
Q 008454 339 LIFGFCKK-G-----KLHEANRIFSEMKATN 363 (565)
Q Consensus 339 li~~~~~~-g-----~~~~A~~~~~~m~~~~ 363 (565)
|...|... | ++++|...|+...+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66665543 2 6777777777766655
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=4.9e-08 Score=87.08 Aligned_cols=165 Identities=7% Similarity=-0.030 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHH----------------HHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDL----------------LFKT 202 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------li~~ 202 (565)
+.+.+......+...|++++|...+++.++.. |.++..|.. +..+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-------------------IDRTEMYYWTNVDKNSEISSKLATELALA 63 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------HHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------CCChHHHHHhhhcchhhhhHHHHHHHHHH
Confidence 34455566677788899999999999888762 223333433 6666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HH
Q 008454 203 YAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI--IE 280 (565)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~ 280 (565)
|.+.|++++|+..|++..+.+.. +...+..+...+...|++++|+..|++..+.. +-+...+..+...|...|+ .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 66666666666666666665433 55666666666666666666666666665543 2244555555555544332 22
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008454 281 RAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEK 326 (565)
Q Consensus 281 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 326 (565)
.+...++.... ..|....+..+..++...|++++|...|++..+
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33333333321 111112222233334445555555555555554
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=2.3e-08 Score=106.26 Aligned_cols=153 Identities=14% Similarity=-0.067 Sum_probs=73.5
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 204 AHRKKFRNATDTFCQMR--------DYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 204 ~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
...|++++|++.|++.. +... .+...+..+...+...|++++|++.|++..+.. +-+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44455555555555554 2221 134445555555555555555555555554432 1234445555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 276 LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRI 355 (565)
Q Consensus 276 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 355 (565)
.|++++|++.|++..+.... +...|..+..++.+.|++++ .+.+++..+... -+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555443221 34444445555555555555 555555444321 1344445555555555555555555
Q ss_pred HHHHHh
Q 008454 356 FSEMKA 361 (565)
Q Consensus 356 ~~~m~~ 361 (565)
|++..+
T Consensus 557 ~~~al~ 562 (681)
T 2pzi_A 557 LDEVPP 562 (681)
T ss_dssp HHTSCT
T ss_pred HHhhcc
Confidence 554443
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=1.8e-08 Score=107.11 Aligned_cols=173 Identities=9% Similarity=-0.064 Sum_probs=107.8
Q ss_pred HHcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 344 CKKGKLHEANRIFSEMK--------ATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCK 415 (565)
Q Consensus 344 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (565)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...|+++.+.+.. +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 55667777777777666 221 334456666666777777777777777776665332 55666667777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 416 EGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEV 495 (565)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 495 (565)
.|++++|...|+++.+.... +...|..+..++.+.|++++ ++.|+++++.. +-+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776665433 45566666677777777777 77777776653 44556666677777777777777777
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 008454 496 LLEMLEKCMAPD-SIILSELYSGLHHCGK 523 (565)
Q Consensus 496 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 523 (565)
|+++.+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7766653 333 3455555555555443
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.88 E-value=2e-07 Score=83.35 Aligned_cols=176 Identities=11% Similarity=-0.019 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 008454 211 NATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG----IIERAVEVF 286 (565)
Q Consensus 211 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~ 286 (565)
+|++.|++..+.| +..++..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555666666543 55666666666666666777777776666554 45555555555555 4 666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 008454 287 KNMESMGFIPSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNGIQ-PNVITFNTLIFGFCK----KGKLHEANRIFS 357 (565)
Q Consensus 287 ~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 357 (565)
++..+.| +...+..|...|.. .+++++|.+++++..+.|.. .+...+..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 45555555555555 55666666666666655421 014555555555555 556666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCC
Q 008454 358 EMKATNVSPNVVTYNTLINGYGQV-G-----NSEMGASLYEEMLRNG 398 (565)
Q Consensus 358 ~m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 398 (565)
+..+. ..+...+..|...|... | +.++|...|+...+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66554 12333444454444432 2 5566666666655544
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.85 E-value=4e-08 Score=85.03 Aligned_cols=159 Identities=11% Similarity=-0.037 Sum_probs=74.2
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008454 144 SIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYG 223 (565)
Q Consensus 144 ~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 223 (565)
......+...|++++|...+++.++. .|.++.++..+...+...|++++|+..|+++....
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~-------------------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 70 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDE-------------------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHH-------------------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc
Confidence 34445555566666666666555544 33445555556666666666666666666554433
Q ss_pred CCcCHHHHHHHHHH-HHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 008454 224 FLPIIESCNKFLSS-LLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIP-SVTTY 301 (565)
Q Consensus 224 ~~p~~~~~~~ll~~-~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~ 301 (565)
. +...+..+... +...+....|+..+++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+
T Consensus 71 p--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~ 147 (176)
T 2r5s_A 71 Q--DNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVK 147 (176)
T ss_dssp C--CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHH
T ss_pred C--ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHH
Confidence 2 32222221111 111112223444454444432 1134445555555555555555555555555443221 23344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 008454 302 NTLISGHCNKGLLSLAMKFKNLM 324 (565)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~m 324 (565)
..+...+...|+.++|...+++.
T Consensus 148 ~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 148 KTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHHHHHHHH
Confidence 44555555555555555554443
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=3.8e-08 Score=85.15 Aligned_cols=161 Identities=7% Similarity=-0.047 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA-F 273 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~ 273 (565)
.+..+...+.+.|++++|+..|++..+.... +...+..+...+...|++++|+..|+...+.. |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3445667778888888888888887665432 56778888888888888888888887765542 244333222111 1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 008454 274 CKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP-NVITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 274 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A 352 (565)
...++..+|+..+++..+.... +...+..+...+...|++++|...++++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1222223345555555543221 35555556666666666666666666665543221 234555555666666666666
Q ss_pred HHHHHHH
Q 008454 353 NRIFSEM 359 (565)
Q Consensus 353 ~~~~~~m 359 (565)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=5.9e-07 Score=81.06 Aligned_cols=203 Identities=10% Similarity=0.002 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHH
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ-P-NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV----VTY 371 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~ 371 (565)
...+..+...+.+.|++++|...|+++.+.... + ....+..+..+|.+.|++++|+..|+++.+.. |+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 344555566677777777777777777664221 1 13456666677777777777777777776642 221 133
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR 451 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (565)
..+..++...|.. .+ ..|..+...+...|+.++|...|+++.+.... +...+......
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l---- 139 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----
Confidence 3334444332210 00 01122233334456777777777777765322 11122111100
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 008454 452 KNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPD--SIILSELYSGLHHCGKDELAMK 529 (565)
Q Consensus 452 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~ 529 (565)
..+...+. .....+...+.+.|++++|...|+++++...... ...+..+..++.+.|+.++|.+
T Consensus 140 ------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 140 ------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp ------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 00000000 1123455677788888888888888887532211 2467778888888888888888
Q ss_pred HHHHHHHCC
Q 008454 530 LFRKMEIRG 538 (565)
Q Consensus 530 ~~~~m~~~g 538 (565)
.++.+...+
T Consensus 206 ~~~~l~~~~ 214 (225)
T 2yhc_A 206 VAKIIAANS 214 (225)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhC
Confidence 888887664
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=1.7e-07 Score=88.28 Aligned_cols=164 Identities=10% Similarity=-0.017 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
+.+.+..+...+...|++++|...++++++. .|.++.++..+...|.+.|++++|+..+++
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------------------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL-------------------SNQNGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-------------------CCcchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4455556666666666666666666666665 344556666666666666666666666666
Q ss_pred HHHCCCCcCHHHHH-HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C
Q 008454 219 MRDYGFLPIIESCN-KFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI-P 296 (565)
Q Consensus 219 ~~~~~~~p~~~~~~-~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p 296 (565)
+.... |+..... .....+...++.+.|...|++..+.. +.+...+..+...+...|++++|++.|.++.+.... .
T Consensus 177 ~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 177 IPLQD--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp SCGGG--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred Cchhh--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 65543 3332222 22223445555555666666655543 234555666666666666666666666666554321 1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLM 324 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 324 (565)
+...+..++..+...|+.++|...+++.
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 1445555666666666666665555543
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.81 E-value=1.7e-07 Score=97.55 Aligned_cols=155 Identities=10% Similarity=-0.032 Sum_probs=117.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 346 KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYL 425 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 425 (565)
.|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887763 445788888999999999999999999999987543 688899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 008454 426 VKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN---EDFDRAAEVLLEMLEK 502 (565)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~ 502 (565)
+++..+.... +...+..+...+...|++++|.+.++++++.. +.+...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998886543 67889999999999999999999999999874 45678888899999999 9999999999999887
Q ss_pred CC
Q 008454 503 CM 504 (565)
Q Consensus 503 ~~ 504 (565)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.80 E-value=5.8e-07 Score=81.14 Aligned_cols=192 Identities=9% Similarity=-0.025 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 008454 332 NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVS-P-NVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDI--LTYN 407 (565)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~ 407 (565)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|...|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556667777888888888888887765211 1 1345667777888888888888888887765332111 2444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc
Q 008454 408 ALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK-HIFEMLMSTFCQN 486 (565)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~ 486 (565)
.+..++.+.|.. .+. .|..+...+...|++++|+..|+++++. .|+. ..+......
T Consensus 83 ~~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l---- 139 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----
T ss_pred HHHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----
Confidence 444455443321 111 1222333445567889999999999876 3432 222221110
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHhhcccCCCccCC
Q 008454 487 EDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKG----FDKLRTINCAPENGEKESG 562 (565)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~~ 562 (565)
..+...+. .....+...|.+.|++++|...|+++.+.. |+. ..+..+..++.+.|+.+.+
T Consensus 140 ------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 140 ------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp ------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 00111110 112356778899999999999999998763 332 4677777888888887653
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.80 E-value=1.4e-07 Score=88.72 Aligned_cols=161 Identities=11% Similarity=0.037 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH
Q 008454 370 TYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYS-ALITGQ 448 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~li~~~ 448 (565)
.+..+...+...|++++|...|++..+.... +...+..+...+.+.|++++|...++++.... |+..... .....+
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l 195 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHH
Confidence 3344444445555555555555555443222 34445555555555555555555555544332 2222111 111223
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 008454 449 CVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAP-DSIILSELYSGLHHCGKDELA 527 (565)
Q Consensus 449 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 527 (565)
...++.++|+..++++++.. +.+...+..+...+...|++++|...++++++..... +...+..++..|...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 34444455555555555543 3345555555555555666666666665555542211 134555555555556665555
Q ss_pred HHHHHHH
Q 008454 528 MKLFRKM 534 (565)
Q Consensus 528 ~~~~~~m 534 (565)
...|++.
T Consensus 275 ~~~~r~a 281 (287)
T 3qou_A 275 ASXYRRQ 281 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=9.1e-08 Score=91.10 Aligned_cols=157 Identities=9% Similarity=-0.053 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHH
Q 008454 370 TYNTLINGYGQVGNSEMGASLYEEMLRN----GIKV-DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVP-----NAS 439 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~ 439 (565)
+|..+...|...|++++|...|++..+. |... -..++..+...|.. |++++|+..+++..+..... ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 4444555555555666655555554432 1100 12345555566655 66666666666554321000 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C---HHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRS----GCRPN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAP-D---SII 510 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~---~~~ 510 (565)
++..+...+...|++++|+..|++.++. +..+. ...+..++.++...|++++|...|++.+ ..... + ...
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 5666666677777777777777766653 11111 1244455555666677777777777766 32110 1 123
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 008454 511 LSELYSGLHHCGKDELAMK 529 (565)
Q Consensus 511 ~~~li~~~~~~g~~~~A~~ 529 (565)
...++.++ ..|+.+.+.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 34444444 4566655555
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.79 E-value=2.5e-08 Score=83.73 Aligned_cols=141 Identities=9% Similarity=-0.014 Sum_probs=71.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 378 YGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERA 457 (565)
Q Consensus 378 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 457 (565)
+...|++++|+..+........ -+...+..+...|.+.|++++|...|++..+.... +...|..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 3344555555555555443211 02223344555555666666666666655554332 455555666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 458 FQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEV-LLEMLEKCMAPDSIILSELYSGLHHCG 522 (565)
Q Consensus 458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~li~~~~~~g 522 (565)
+..|+++++.. +-+..++..+...+.+.|++++|.+. ++++++.. +-+..+|......+...|
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 66666665543 33455555555566666665544333 35555532 123444554444444444
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=2e-07 Score=97.06 Aligned_cols=164 Identities=9% Similarity=-0.072 Sum_probs=124.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008454 311 KGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASL 390 (565)
Q Consensus 311 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 390 (565)
.|++++|.+.+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999988764 2367889999999999999999999999998874 45678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 008454 391 YEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR---KNSERAFQLYKSMIRS 467 (565)
Q Consensus 391 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~ 467 (565)
+++..+.... +...+..+..+|.+.|++++|.+.+++..+.... +...+..+...+... |+.++|.+.++++++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999987543 6889999999999999999999999999886543 678899999999999 9999999999999987
Q ss_pred CCCCCHHHHHHH
Q 008454 468 GCRPNKHIFEML 479 (565)
Q Consensus 468 ~~~p~~~~~~~l 479 (565)
+ +.+...|..+
T Consensus 158 ~-p~~~~~~~~l 168 (568)
T 2vsy_A 158 G-VGAVEPFAFL 168 (568)
T ss_dssp T-CCCSCHHHHT
T ss_pred C-CcccChHHHh
Confidence 5 3333444433
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.79 E-value=2.7e-08 Score=83.53 Aligned_cols=85 Identities=13% Similarity=0.037 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 274 (565)
.+..+...|.+.|++++|++.|++..+.... +..+|..+...+...|++++|+..|+...+... -+...|..+...|.
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELNP-TQKDLVLKIAELLC 110 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 3444445555555555555555555444322 444455555555555555555555554444321 13344444444444
Q ss_pred HcCCHHH
Q 008454 275 KLGIIER 281 (565)
Q Consensus 275 ~~g~~~~ 281 (565)
+.|++++
T Consensus 111 ~~~~~~~ 117 (150)
T 4ga2_A 111 KNDVTDG 117 (150)
T ss_dssp HHCSSSS
T ss_pred HcCChHH
Confidence 4444443
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=1.6e-07 Score=89.48 Aligned_cols=198 Identities=10% Similarity=-0.004 Sum_probs=105.0
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 206 RKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD-SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVE 284 (565)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 284 (565)
.|++++|.+++++..+.... . +.+ .++++.|...|... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 46777888888777653211 1 112 46677777776654 235666778888877
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 008454 285 VFKNMESM----GFIP-SVTTYNTLISGHCNKGLLSLAMKFKNLMEKN----GIQP-NVITFNTLIFGFCKKGKLHEANR 354 (565)
Q Consensus 285 ~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~ 354 (565)
.|.+..+. |-.. -..+|+.+...|.+.|++++|...+++..+. |-.. -..++..+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77766542 1100 1345666667777777777777777665432 1110 12345555566655 66666666
Q ss_pred HHHHHHhCCC---CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 008454 355 IFSEMKATNV---SP--NVVTYNTLINGYGQVGNSEMGASLYEEMLRN----GIKVD-ILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 355 ~~~~m~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~ 424 (565)
.|++..+... .+ ...++..+...|.+.|++++|...|++..+. +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666543210 00 0234455555555566666666555555432 11111 1133444444444555555555
Q ss_pred HHHHHH
Q 008454 425 LVKDLD 430 (565)
Q Consensus 425 ~~~~~~ 430 (565)
.|++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 555544
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.74 E-value=8.1e-06 Score=77.46 Aligned_cols=178 Identities=11% Similarity=-0.041 Sum_probs=125.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-
Q 008454 201 KTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSE-RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL-G- 277 (565)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g- 277 (565)
....+.+..++|+++++.+...+.. +..+|+.--..+...+ .+++++++++.+.....+ +..+|+.-...+... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 3334445667888888888887755 6778888777777777 488899999888876533 667777766666666 6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-
Q 008454 278 IIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLS--------LAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK- 348 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~- 348 (565)
++++++++++++.+...+ |..+|+.-.-.+.+.|.++ ++++.++++.+.... |..+|+.....+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 788888888888876544 7777776655555555555 788888888776543 77778777777777665
Q ss_pred ------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008454 349 ------LHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGN 383 (565)
Q Consensus 349 ------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 383 (565)
++++++.++++.... +-|...|+.+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 677777777777654 4566666665555555554
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.72 E-value=3e-05 Score=78.61 Aligned_cols=347 Identities=9% Similarity=-0.022 Sum_probs=213.0
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCC-chhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHH
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRK-FKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVF 196 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (565)
+.++.+..+|+.+.... |+.+.|...+....+.+. .+....+|+..+.. ....+.+..+|
T Consensus 28 ~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~----------------vg~d~~s~~iW 88 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ----------------FENYWDSYGLY 88 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHH----------------STTCTTCHHHH
T ss_pred CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH----------------cCCCcccHHHH
Confidence 78999999999998854 488899888888776653 24455555555543 11123355666
Q ss_pred HHHHHHHH----hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc-------------CCChHHHHHHHHHHHHCCC
Q 008454 197 DLLFKTYA----HRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD-------------SERVDIALGFYKEMRRNRI 259 (565)
Q Consensus 197 ~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~-------------~~~~~~A~~~~~~m~~~~~ 259 (565)
...+..+. .+|+.+.+..+|++........-...|......-.. .+.+..|..+++.+...-.
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 66665543 346788899999999874222112223322221110 1223334444544432100
Q ss_pred CCCHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 008454 260 SPNVYTLNMVMHAFCKL--GI-----IERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN 332 (565)
Q Consensus 260 ~p~~~~~~~li~~~~~~--g~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 332 (565)
..+...|...+..-... |- .+.+..+|+++.... +-+...|...+..+.+.|+.+.|..++++.... +.+
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 01334555555442221 11 345677888888753 346888888888889999999999999999987 334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------C---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATN---------V---SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIK 400 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 400 (565)
...|.. |....+.++. ++.+.+.- . ......|...+....+.++.+.|..+|+.. +.. .
T Consensus 246 ~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~ 316 (493)
T 2uy1_A 246 MFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-G 316 (493)
T ss_dssp SHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-C
T ss_pred HHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-C
Confidence 433332 2222111121 22222110 0 011245666677777788899999999999 322 2
Q ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008454 401 VDILTYNALILGLCKEG-KTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEML 479 (565)
Q Consensus 401 ~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (565)
.+...|...+..-...+ +.+.|..+|+...+.... +...+...+....+.|+.+.|..+|+.+. .....|...
T Consensus 317 ~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~ 390 (493)
T 2uy1_A 317 VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSM 390 (493)
T ss_dssp CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHH
Confidence 34455543333333333 699999999998875322 45556667777788999999999999973 256788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 008454 480 MSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~~ 501 (565)
+..-...|+.+.+..+++++.+
T Consensus 391 ~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 391 IEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8777788999999999988864
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=1.6e-06 Score=77.17 Aligned_cols=127 Identities=9% Similarity=-0.077 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008454 370 TYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQC 449 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 449 (565)
.+..+...+...|++++|...|++.. .++...+..+...|...|++++|...+++..+.... +...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 34455666667777777777777663 446667777777777777777777777777665432 5566777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 450 VRKNSERAFQLYKSMIRSGCRPNK----------------HIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 450 ~~~~~~~A~~~~~~m~~~~~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
..|++++|++.|+++++.. +.+. ..+..+..++.+.|++++|...++++.+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777777653 2222 55666666777777777777777777664
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=1e-05 Score=76.85 Aligned_cols=175 Identities=9% Similarity=-0.050 Sum_probs=136.5
Q ss_pred HhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCcCHH
Q 008454 151 TKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRK-KFRNATDTFCQMRDYGFLPIIE 229 (565)
Q Consensus 151 ~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~ 229 (565)
......++|+.+.+.++.. .|.+..+|+.--..+...| +++++++.++.+...+.+ +..
T Consensus 65 ~~~e~se~AL~lt~~~L~~-------------------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~ 124 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM-------------------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQ 124 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHH
T ss_pred HhCCCCHHHHHHHHHHHHh-------------------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHH
Confidence 3344456788888888877 4556677887777777788 599999999999998866 888
Q ss_pred HHHHHHHHHHcC-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCCHH
Q 008454 230 SCNKFLSSLLDS-E-RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIE--------RAVEVFKNMESMGFIPSVT 299 (565)
Q Consensus 230 ~~~~ll~~~~~~-~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~ 299 (565)
+|+.-...+... + ++++++++++.+.+... -|-.+|+.-.-.+.+.|.++ ++++.++++.+..+. |..
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~S 202 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNS 202 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHH
Confidence 998887777776 6 88999999999987653 47788876666666666665 899999999987655 889
Q ss_pred HHHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 300 TYNTLISGHCNKGL-------LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK 348 (565)
Q Consensus 300 ~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 348 (565)
+|+.....+.+.++ ++++++.++++..... -|...|+-+-..+.+.|+
T Consensus 203 AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 203 AWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 99988888888776 6888899888887653 378888877776666664
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=6.3e-06 Score=77.62 Aligned_cols=162 Identities=10% Similarity=0.036 Sum_probs=86.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 008454 339 LIFGFCKKGKLHEANRIFSEMKATNV-SPNV----VTYNTLINGYGQVGNSEMGASLYEEMLRNGIK-VD----ILTYNA 408 (565)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~ 408 (565)
.+..+...|++++|.+++++..+... .++. ..+..+...+...|++++|...+++..+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566677777777777777665321 1121 12223445555556777777777776653211 12 234666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 008454 409 LILGLCKEGKTKKAAYLVKDLDK----N-SLVP-NASTYSALITGQCVRKNSERAFQLYKSMIRS----GCRPN-KHIFE 477 (565)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~----~-~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~ 477 (565)
+...|...|++++|...++++.+ . +..+ ...+|..+...|.+.|++++|+..+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666666666666666552 1 1111 1124555556666666666666666655532 11111 34555
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHH
Q 008454 478 MLMSTFCQNE-DFDRAAEVLLEML 500 (565)
Q Consensus 478 ~li~~~~~~g-~~~~A~~~~~~~~ 500 (565)
.+..++.+.| ++++|.+.++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555566666 3466666555554
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=3.8e-06 Score=79.13 Aligned_cols=164 Identities=6% Similarity=-0.043 Sum_probs=125.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 008454 373 TLINGYGQVGNSEMGASLYEEMLRNGI-KVDI----LTYNALILGLCKEGKTKKAAYLVKDLDKNSLV-PN----ASTYS 442 (565)
Q Consensus 373 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~ 442 (565)
..+..+...|++++|..++++..+... .++. ..+..+...+...|++++|...++++.+.... ++ ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778899999999999999987532 2221 23445777777888999999999999874322 22 33689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHH
Q 008454 443 ALITGQCVRKNSERAFQLYKSMIRS-----GCRPN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLEK----CMAPD-SIIL 511 (565)
Q Consensus 443 ~li~~~~~~~~~~~A~~~~~~m~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~ 511 (565)
.+...|...|++++|+..|+++++. +..+. ..++..+...|.+.|++++|...+++.++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999999852 11122 247888999999999999999999988753 22222 5688
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 008454 512 SELYSGLHHCGK-DELAMKLFRKMEI 536 (565)
Q Consensus 512 ~~li~~~~~~g~-~~~A~~~~~~m~~ 536 (565)
..+..++.+.|+ +++|.+.+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999994 6999999988753
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=2.3e-06 Score=76.20 Aligned_cols=129 Identities=10% Similarity=-0.049 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGL 413 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (565)
..+..+...+...|++++|++.|++.. .++...+..+...+...|++++|...+++..+... .+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 445666778888899999998888763 55778888888888899999999999988887643 3677888888889
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVP---------------NASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p---------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
...|++++|...|+.+.+..... ....+..+..++...|++++|.+.|+.+++.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999998888754321 1267788888888899999999999988875
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=2.4e-06 Score=72.48 Aligned_cols=129 Identities=9% Similarity=-0.115 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
..+..+...+...|++++|...++...+.... +...+..+...+...|++++|...+++.++.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44566667777777777777777777665332 56677777777778888888888888877764 44567777777788
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 008454 484 CQNEDFDRAAEVLLEMLEKCMAPDSIILSEL--YSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~ 535 (565)
...|++++|...++++.+... .+...+..+ +..+.+.|++++|.+.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888777532 244444333 333667788888888877654
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=1.3e-05 Score=75.36 Aligned_cols=165 Identities=10% Similarity=0.012 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--H
Q 008454 335 TFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV------VTYNTLINGYGQVGNSEMGASLYEEMLRNGI---KVD--I 403 (565)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~--~ 403 (565)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556667777777777777666554211 11 1123344455566677777777766654311 111 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-C
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDK---NSL-VP--NASTYSALITGQCVRKNSERAFQLYKSMIRSG----CRP-N 472 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~-~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p-~ 472 (565)
.+|+.+...|...|++++|...++++.+ ... .+ ...+|..+...|...|++++|+..+++.++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4566666677777777777777666542 110 11 11356666666667777777777666665421 001 1
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 008454 473 KHIFEMLMSTFCQNEDFDRA-AEVLLEML 500 (565)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A-~~~~~~~~ 500 (565)
..+|..+..++.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45566666666677777666 55555544
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.55 E-value=3.1e-06 Score=68.31 Aligned_cols=94 Identities=15% Similarity=0.044 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (565)
+......|.+.|++++|+..|++..+.... +...|..+..++.+.|++++|+..+++.++.. +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 333444444444444444444444433222 33444444444444444444444444444432 2233444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 008454 486 NEDFDRAAEVLLEMLE 501 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~ 501 (565)
.|++++|.+.|++.++
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444444
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.55 E-value=1.1e-05 Score=76.00 Aligned_cols=166 Identities=7% Similarity=-0.030 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--HH
Q 008454 370 TYNTLINGYGQVGNSEMGASLYEEMLRNGIKVD-----ILTYNALILGLCKEGKTKKAAYLVKDLDKNSL---VPN--AS 439 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~ 439 (565)
.+...+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567788899999999999998887643211 12344566777888999999999999875322 122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRS-GCRPN-----KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC----MAP-DS 508 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~ 508 (565)
+|+.+...|...|++++|+..++++++. ...++ ..++..+...|...|++++|...+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8899999999999999999999998832 00222 2578889999999999999999999987542 111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 008454 509 IILSELYSGLHHCGKDELA-MKLFRKME 535 (565)
Q Consensus 509 ~~~~~li~~~~~~g~~~~A-~~~~~~m~ 535 (565)
.+|..+...|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77777654
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.54 E-value=4.4e-06 Score=70.78 Aligned_cols=126 Identities=12% Similarity=0.058 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 371 YNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCV 450 (565)
Q Consensus 371 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (565)
+..+...+...|++++|...|++..+... .+..++..+..++...|++++|...+++..+.... +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 44444555555555555555555554322 24555555666666666666666666665554322 45556666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 008454 451 RKNSERAFQLYKSMIRSGCRPNKHIFEML--MSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 451 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~~ 499 (565)
.|++++|...++++++.. +.+...+..+ +..+...|++++|...+.+.
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666543 2333343222 22355566666666666554
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.53 E-value=9.4e-07 Score=73.82 Aligned_cols=100 Identities=11% Similarity=-0.009 Sum_probs=75.7
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM 270 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 270 (565)
.+...+..+...+.+.|++++|++.|+++...+.. +...|..+..++...|++++|+..|++..+... -+...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHH
Confidence 35566777777888888888888888888776643 677788888888888888888888888776542 2566777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 008454 271 HAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
.+|...|++++|+..|++..+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7888888888888888877765
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.52 E-value=3.5e-06 Score=68.01 Aligned_cols=94 Identities=17% Similarity=0.076 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCK 415 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (565)
+......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++.++.+.. +...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 3334444444444444444444444332 233444444444444444444444444444443221 33444444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 008454 416 EGKTKKAAYLVKDLDK 431 (565)
Q Consensus 416 ~g~~~~A~~~~~~~~~ 431 (565)
.|++++|...|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444443
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.50 E-value=1.5e-06 Score=76.67 Aligned_cols=84 Identities=10% Similarity=-0.010 Sum_probs=38.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCH
Q 008454 345 KKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN----GIK-VDILTYNALILGLCKEGKT 419 (565)
Q Consensus 345 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~ 419 (565)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644433321 1123344555555555566666666655555431 111 1223344444555555555
Q ss_pred HHHHHHHHHH
Q 008454 420 KKAAYLVKDL 429 (565)
Q Consensus 420 ~~A~~~~~~~ 429 (565)
++|...+++.
T Consensus 83 ~~A~~~~~~a 92 (203)
T 3gw4_A 83 DAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=7e-06 Score=65.44 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
.+..+...+...|++++|...++++.+... .+...+..+...+...|++++|..+++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 344444444444444444444444443321 133444444444444555555555555444432 233444444444455
Q ss_pred hcCCHHHHHHHHHHHHH
Q 008454 485 QNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 485 ~~g~~~~A~~~~~~~~~ 501 (565)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555554444
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=8.7e-07 Score=82.99 Aligned_cols=195 Identities=11% Similarity=-0.019 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 332 NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALIL 411 (565)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 411 (565)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556666667777777777777777766653 335666667777777777777777777777665332 5666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008454 412 GLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDR 491 (565)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 491 (565)
+|...|++++|...|+...+.+.. +...+...+....+ ..++ .-+........+.+......+... ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKK-KRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHH-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHH-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 777777777777777766543210 00001111111111 0111 112222223334444444444322 2577888
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 008454 492 AAEVLLEMLEKCMAPDSI-ILSELYSGLHHC-GKDELAMKLFRKMEIR 537 (565)
Q Consensus 492 A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 537 (565)
|.+.+++..+. .|+.. ....+...+.+. +.+++|.++|++..+.
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88887777664 44443 333333334443 6677888888877543
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.49 E-value=4.3e-06 Score=76.73 Aligned_cols=187 Identities=11% Similarity=-0.043 Sum_probs=113.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHHHHHH-------HHHHHcCCChHHHHHHHHHHHHCCCCCC---------------
Q 008454 205 HRKKFRNATDTFCQMRDYGFLPIIESCNKF-------LSSLLDSERVDIALGFYKEMRRNRISPN--------------- 262 (565)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-------l~~~~~~~~~~~A~~~~~~m~~~~~~p~--------------- 262 (565)
..++...|.+.|.++.+.... ....|+.+ ...+...++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578999999999999887654 67788777 4556655556655555554333 1111
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--H
Q 008454 263 -------VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN--V 333 (565)
Q Consensus 263 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~ 333 (565)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..++...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345556667777777777777766543 333344445556667777777777776443321 111 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPN--VVTYNTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
..+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455566667777777777777776654322132 234445555666677777777777776664
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=4.6e-06 Score=67.56 Aligned_cols=118 Identities=11% Similarity=-0.044 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008454 402 DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMS 481 (565)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 481 (565)
+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.++++++.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3445555666666666666666666666554322 45556666666666666666666666666543 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 482 TFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCG 522 (565)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 522 (565)
++...|++++|.+.+++..+... .+...+..+...+.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 66666666666666666655421 12334444444444433
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=2.1e-06 Score=75.65 Aligned_cols=120 Identities=9% Similarity=-0.064 Sum_probs=59.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCC
Q 008454 309 CNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT----NVS-PNVVTYNTLINGYGQVGN 383 (565)
Q Consensus 309 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~ 383 (565)
...|++++|.++++.+... ......++..+...+...|++++|...+++..+. +.. .....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456666666644444331 1124455566666666666666666666665441 111 122445555666666666
Q ss_pred hHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 384 SEMGASLYEEMLRN----GIKV--DILTYNALILGLCKEGKTKKAAYLVKDL 429 (565)
Q Consensus 384 ~~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (565)
+++|...+++..+. +..+ ....+..+...+...|++++|...+++.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666655432 1011 1233444455555555555555555544
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=9.8e-06 Score=64.56 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 371 YNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCV 450 (565)
Q Consensus 371 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (565)
+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHH
Confidence 33444444444444444444444443321 1334444444555555555555555555444322 134445555555555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 008454 451 RKNSERAFQLYKSMIRS 467 (565)
Q Consensus 451 ~~~~~~A~~~~~~m~~~ 467 (565)
.|++++|...++++.+.
T Consensus 90 ~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 90 QGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 55555555555555544
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.46 E-value=5.8e-06 Score=66.56 Aligned_cols=117 Identities=11% Similarity=-0.070 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
..+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.+++.++.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 33444444555555555555555554443211 34444555555555555555555555555432 23344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008454 484 CQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGK 523 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 523 (565)
...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 55555555555555554432 1233444444444444443
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.46 E-value=4.4e-06 Score=67.67 Aligned_cols=121 Identities=7% Similarity=-0.043 Sum_probs=87.5
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNM 268 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (565)
.+.+...+..+...+...|++++|+..|++..+.... +...+..+...+...|++++|+..+++..+.. +.+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 3445677888888888889999999988888876533 67788888888888888888888888887653 235677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008454 269 VMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG 312 (565)
Q Consensus 269 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 312 (565)
+...+...|++++|.+.+++..+.... +...+..+...+.+.|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 777888888888888888877664322 3444555555554443
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.45 E-value=6.9e-07 Score=83.68 Aligned_cols=98 Identities=9% Similarity=-0.009 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
+...+..+...+...|++++|...+++.++. .+.+...|..+..+|.+.|++++|++.+++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-------------------NPLVAVYYTNRALCYLKMQQPEQALADCRR 63 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3455566666666667777777766666665 334556666666666667777777777766
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
..+.... +...+..+..++...|++++|+..|+...+
T Consensus 64 al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 64 ALELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6665432 556666666666666666666666666544
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.44 E-value=6.3e-06 Score=68.73 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
..+..+...+.+.|++++|...|+.+.+.... +...|..+..+|...|++++|+..|+++++.. +-+...|..+..++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 34555566666666666666666666654432 55566666666666666666666666666653 33455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 008454 484 CQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~ 502 (565)
...|++++|...|+++++.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666654
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=6.7e-06 Score=79.11 Aligned_cols=130 Identities=14% Similarity=0.032 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPN--------------ASTYSALITGQCVRKNSERAFQLYKSMIRSGC 469 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 469 (565)
..+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..++++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3445555555555555555555555544322211 3566666666777777777777777776653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 008454 470 RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELA-MKLFRKME 535 (565)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 535 (565)
+.+...|..+..++...|++++|...|+++++.. +.+...+..+..++.+.|+.++| ..+|+.|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777777777777777776652 22455666666666667776666 34555553
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.43 E-value=7.1e-06 Score=66.03 Aligned_cols=120 Identities=8% Similarity=-0.114 Sum_probs=81.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
+...+..+...+...|++++|++.|++....... +...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3456667777778888888888888887765432 56777777777777778888877777776643 234666677777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008454 272 AFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLL 314 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 314 (565)
.+...|++++|.+.+++..+.... +...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 777777777777777776665322 455566666666665543
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=5.8e-06 Score=75.86 Aligned_cols=202 Identities=11% Similarity=-0.033 Sum_probs=132.9
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHH-------HHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHH----
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIV-------LHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILY---- 184 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l-------~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~---- 184 (565)
..+++..|++.|..+....| .....|..+ ..++.+..+..++...+...+... ...+...+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP--~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~-----p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE--SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS-----MSTLNARIAIGGL 90 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC-----GGGGCCEEECCTT
T ss_pred cCCCHHHHHHHHHHHHHhCh--hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC-----hhhhhhhhccCCc
Confidence 46799999999999999876 456677666 455555555555555555444421 000000000
Q ss_pred ----hcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 008454 185 ----SYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS 260 (565)
Q Consensus 185 ----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~ 260 (565)
.|+ ...-..+.-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .
T Consensus 91 y~~~~~~-v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d 166 (282)
T 4f3v_A 91 YGDITYP-VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-D 166 (282)
T ss_dssp TCCCEEE-CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-C
T ss_pred ccccccc-cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-C
Confidence 000 00112344556778889999999999999988765 433366666678888999999999997554321 1
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 008454 261 PN--VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS--VTTYNTLISGHCNKGLLSLAMKFKNLMEKNG 328 (565)
Q Consensus 261 p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 328 (565)
|. ...+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11 23677778888888999999999988875432243 3355666777888888888888888888763
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.39 E-value=7.3e-06 Score=78.84 Aligned_cols=146 Identities=11% Similarity=-0.030 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 332 NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALIL 411 (565)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 411 (565)
+...+..+...+.+.|++++|+..|++..+.. |+...+ ..+.+..+-. .....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQA--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHH--------HHHHHHHHHHH
Confidence 46677778888888888888888888877653 221000 0011110000 01345566666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008454 412 GLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDR 491 (565)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 491 (565)
+|.+.|++++|...++++.+.... +...|..+..+|...|++++|+..|+++++.. +-+...+..+..++.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655432 55666666667777777777777777776653 3455666666666666666666
Q ss_pred H-HHHHHHHH
Q 008454 492 A-AEVLLEML 500 (565)
Q Consensus 492 A-~~~~~~~~ 500 (565)
| ...++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 33455544
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=3.4e-06 Score=72.67 Aligned_cols=120 Identities=9% Similarity=0.078 Sum_probs=79.1
Q ss_pred hCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHH
Q 008454 152 KNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESC 231 (565)
Q Consensus 152 ~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 231 (565)
..|++++|...+++.++. .+.++.++..+...|...|++++|+..|++..+.+.. +...+
T Consensus 22 ~~~~~~~A~~~~~~al~~-------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 81 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA-------------------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELY 81 (177)
T ss_dssp -----CCCCHHHHHHHHH-------------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHH
T ss_pred hccCHHHHHHHHHHHHHh-------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHH
Confidence 345666666666666554 3456677777777777778888888887777665433 56666
Q ss_pred HHHHHH-HHcCCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 232 NKFLSS-LLDSERV--DIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 232 ~~ll~~-~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
..+... +...|++ ++|...|+...+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666 6677776 77777777776653 224566667777777777777777777777665
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.38 E-value=3.1e-06 Score=72.89 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=59.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 008454 381 VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITG-QCVRKNS--ERA 457 (565)
Q Consensus 381 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~--~~A 457 (565)
.|++++|...+++..+... .+...+..+...|...|++++|...|+++.+.... +...+..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 4455555555555544322 24455555555555555555555555555443222 34444445544 4455555 555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 458 FQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
...++++++.. +.+...+..+...+...|++++|...++++++.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55555555542 233445555555555555666665555555553
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.38 E-value=0.00022 Score=67.38 Aligned_cols=138 Identities=7% Similarity=-0.008 Sum_probs=76.1
Q ss_pred HcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 275 KLGIIE-RAVEVFKNMESMGFIPSVTTYNTLISGHCNKGL----------LSLAMKFKNLMEKNGIQPNVITFNTLIFGF 343 (565)
Q Consensus 275 ~~g~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 343 (565)
+.|.+. +|+++++.+...... +...|+.--..+...+. +++++.+++.+..... -+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 445543 677777777765433 44555543333333222 4566666666665432 2556666555555
Q ss_pred HHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 344 CKKG--KLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGN-SEMGASLYEEMLRNGIKVDILTYNALILGLCKE 416 (565)
Q Consensus 344 ~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (565)
.+.| .+++++..++.+.+.. +-|...|+.-.-.+...|. ++++++.++.+++..+. |...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 5555 3666666666666654 4455566555555555565 36666666666665443 555555555444443
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.37 E-value=2e-06 Score=71.70 Aligned_cols=99 Identities=8% Similarity=-0.073 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
+...+..+...+...|++++|+..|++....+.. +...|..+..++...|++++|+..|++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 4556666777777788888888888877765533 67777777777777777877777777776653 225566667777
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 008454 272 AFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~ 292 (565)
++...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776654
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.36 E-value=2.7e-06 Score=70.92 Aligned_cols=96 Identities=11% Similarity=0.021 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
..+..+...+.+.|++++|...|+.+...... +...|..+..++...|++++|+..|+++++.. +.+...+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34444555555555555555555555543322 44455555555555555555555555555542 23344455555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 008454 484 CQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~ 501 (565)
...|++++|...|++.++
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.34 E-value=0.00069 Score=63.90 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=106.4
Q ss_pred HhcCChH-HHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 204 AHRKKFR-NATDTFCQMRDYGFLPIIESCNKFLSSLLDSER----------VDIALGFYKEMRRNRISPNVYTLNMVMHA 272 (565)
Q Consensus 204 ~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 272 (565)
.+.|.+. +|+++++.+...++. +..+|+.--..+...+. +++++.+++.+..... -+..+|+.-.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3445544 788888888887654 56667665555544333 5677777777776543 366677766666
Q ss_pred HHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 008454 273 FCKLG--IIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGL-LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKK--- 346 (565)
Q Consensus 273 ~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--- 346 (565)
+...| .+++++++++++.+.... |..+|+.-.-.+...|. ++++++.++.+.+..+. |..+|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 66666 377888888888776544 77777776666667776 47778888777776543 667776666555544
Q ss_pred -----------CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 347 -----------GKLHEANRIFSEMKATNVSPNVVTYNTL 374 (565)
Q Consensus 347 -----------g~~~~A~~~~~~m~~~~~~~~~~~~~~l 374 (565)
+.++++++.+....... +-|...|+-+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 33566666666665543 3445555433
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.33 E-value=1.3e-06 Score=76.94 Aligned_cols=125 Identities=10% Similarity=-0.042 Sum_probs=55.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-CC--------------HH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS-PN--------------VY 264 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-p~--------------~~ 264 (565)
+......|+++++.+.|+.-..... .....+..+...+...|++++|+..|++..+.... ++ ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 3344444566666555543322111 13455666667777777777777777777654211 10 13
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEK 326 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 326 (565)
.|..+..++...|++++|+..+++..+... .+...+..+..+|...|++++|...+++..+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 444444444444555555444444444321 1334444444444444444444444444443
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.27 E-value=2.7e-05 Score=62.58 Aligned_cols=94 Identities=11% Similarity=-0.037 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (565)
+..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..+++.++.. +.+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 344444445555555555555554443222 34444555555555555555555555555442 2334444445555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 008454 486 NEDFDRAAEVLLEMLE 501 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~ 501 (565)
.|++++|...+++.++
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555444
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.5e-05 Score=64.11 Aligned_cols=94 Identities=13% Similarity=0.021 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
+..+...+.+.|++++|++.|++..+.... +...|..+..++.+.|++++|+..|++..+.. +.+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333444444444444444444444443322 34444444444444444444444444444332 1133444444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 008454 276 LGIIERAVEVFKNMES 291 (565)
Q Consensus 276 ~g~~~~a~~~~~~m~~ 291 (565)
.|++++|.+.|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 4444444444444443
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.25 E-value=2.6e-05 Score=68.45 Aligned_cols=131 Identities=12% Similarity=-0.038 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLV-P--------------NASTYSALITGQCVRKNSERAFQLYKSMIRSGC 469 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p--------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 469 (565)
.+..+...+...|++++|...|++..+.... | ....|..+..++...|++++|+..++++++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444444555555555555555555442211 0 02566667777777777777777777777753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHC
Q 008454 470 RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAM-KLFRKMEIR 537 (565)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~ 537 (565)
+.+...+..+..++...|++++|...|++.++.. +-+..++..+..++...|+.+++. ..|..|...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4456677777777777888888888887777653 225566666666666666666655 455555443
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.25 E-value=2.3e-05 Score=63.23 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 008454 441 YSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC--MAPD----SIILSEL 514 (565)
Q Consensus 441 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~~l 514 (565)
+..+...+.+.|++++|++.|+++++.. +-+...|..+..+|.+.|++++|++.+++.++.. ...+ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3334444444444444444444444432 2234444444444444444444444444443321 0001 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 008454 515 YSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 515 i~~~~~~g~~~~A~~~~~~m~~ 536 (565)
..++...|++++|++.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555555555555555443
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=7.2e-05 Score=58.68 Aligned_cols=94 Identities=12% Similarity=-0.018 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (565)
+..+...+...|++++|...++........ +...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 333444444444444444444444332211 33344444444444444444444444444432 2233444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 008454 486 NEDFDRAAEVLLEMLE 501 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~ 501 (565)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444443
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=6.3e-05 Score=59.01 Aligned_cols=94 Identities=14% Similarity=0.009 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCK 415 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (565)
+..+...+...|++++|.+.++...... +.+...+..+...+...|++++|...+++..+.... +...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 223334444444444444444444444444433211 33344444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 008454 416 EGKTKKAAYLVKDLDK 431 (565)
Q Consensus 416 ~g~~~~A~~~~~~~~~ 431 (565)
.|++++|...++...+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444443
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.22 E-value=3.1e-05 Score=62.41 Aligned_cols=105 Identities=14% Similarity=0.104 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSG--CRPN----KHIFEM 478 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~----~~~~~~ 478 (565)
.+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4455666666666666666666666654332 45566666666666666666666666665431 1111 134556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 479 LMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILS 512 (565)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (565)
+..++...|++++|++.|++.++. .||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 666677777777777777776653 34544433
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=2e-05 Score=61.32 Aligned_cols=101 Identities=13% Similarity=-0.040 Sum_probs=74.4
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC--CHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISP--NVYTLNM 268 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ 268 (565)
.+..++..+...+...|++++|+..|++..+.... +...+..+...+...|++++|...|++..+.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 35566677788888888888888888888776533 56777777788888888888888888877653 22 4667777
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhCC
Q 008454 269 VMHAFCKL-GIIERAVEVFKNMESMG 293 (565)
Q Consensus 269 li~~~~~~-g~~~~a~~~~~~m~~~g 293 (565)
+...+... |++++|.+.++......
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777777 78888888777776653
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=0.00013 Score=72.80 Aligned_cols=196 Identities=11% Similarity=-0.081 Sum_probs=99.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCH
Q 008454 271 HAFCKLGIIERAVEVFKNMESMGFIPS----------------VTTYNTLISGHCNKGLLSLAMKFKNLMEKNG-IQPNV 333 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~ 333 (565)
+.+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667778888877777776532211 1234556666666667666666666554321 01111
Q ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC--C
Q 008454 334 I----TFNTLIFGFCKKGKLHEANRIFSEMKA----TNVSPN-VVTYNTLINGYGQVGNSEMGASLYEEMLRN--GI--K 400 (565)
Q Consensus 334 ~----~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~--~ 400 (565)
. +.+.+-..+...|++++|.++++.... .+..+. ..++..+...+...|++++|..+++++... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 112222233344566666666665543 111111 234555666666666666666666655432 11 1
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 401 V-DILTYNALILGLCKEGKTKKAAYLVKDLDKN---SLVP-N--ASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 401 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p-~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
+ ...++..++..|...|++++|..+++..... ...| . ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1345555666666666666666666654321 0111 1 12344444555556666666666655543
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=7.6e-05 Score=60.69 Aligned_cols=98 Identities=13% Similarity=-0.013 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008454 402 DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMS 481 (565)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 481 (565)
+...+..+...+...|++++|...|+........ +...|..+...+...|++++|...+++.++.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3444445555555555555555555554443322 34445555555555555555555555555442 233445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 008454 482 TFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~ 501 (565)
++...|++++|...|+++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555543
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.18 E-value=3e-05 Score=63.94 Aligned_cols=94 Identities=17% Similarity=0.016 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (565)
+..+...+.+.|++++|...|+.+...+.. +...|..+..++...|++++|+..|+++++.. +.+...+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 344444555555555555555555443322 44455555555555555555555555555543 3334445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 008454 486 NEDFDRAAEVLLEMLE 501 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~ 501 (565)
.|++++|...|+++++
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.18 E-value=4.3e-05 Score=64.69 Aligned_cols=98 Identities=12% Similarity=-0.055 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 403 ILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMST 482 (565)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 482 (565)
...+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|+..|++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445566666666667777777777666654332 55666666667777777777777777776653 3446666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 008454 483 FCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~ 502 (565)
+...|++++|...|++.++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 77777777777777776654
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=3.9e-05 Score=62.48 Aligned_cols=97 Identities=9% Similarity=0.006 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
++..+..+...+...|++++|+..|+........ +...|..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3444444555555555555555555554443322 34445555555555555555555555544432 123444555555
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 008454 272 AFCKLGIIERAVEVFKNME 290 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~ 290 (565)
++...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555444
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=4.1e-05 Score=64.82 Aligned_cols=97 Identities=7% Similarity=0.014 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
...+..+...+...|++++|...+++.++. .+.++.+|..+..+|.+.|++++|+..|++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 71 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI-------------------APANPIYLSNRAAAYSASGQHEKAAEDAELA 71 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344555555555566666666666555554 3334555555555556666666666666555
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
.+.+.. +...|..+..++...|++++|...|++..+
T Consensus 72 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 72 TVVDPK-YSKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 554422 455555555555555555555555555544
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.17 E-value=3.6e-05 Score=63.44 Aligned_cols=98 Identities=10% Similarity=-0.076 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 438 ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSG 517 (565)
Q Consensus 438 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 517 (565)
...+..+...+...|++++|...|+.++... +.+...|..+..++...|++++|...++++++... .+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHH
Confidence 3456677788899999999999999999875 56788899999999999999999999999998743 366778889999
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 008454 518 LHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 518 ~~~~g~~~~A~~~~~~m~~~ 537 (565)
|...|++++|.+.|++..+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998765
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=2.4e-05 Score=62.83 Aligned_cols=95 Identities=12% Similarity=0.100 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHHHH
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC--RPN----KHIFEML 479 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~~~l 479 (565)
+..+...+...|++++|...++...+.... +...+..+...+...|++++|...++++++... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 334444444444444444444444433211 334444444444444555555554444443310 111 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 008454 480 MSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~~ 501 (565)
..++...|++++|...++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4445555555555555555444
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=0.00019 Score=71.50 Aligned_cols=197 Identities=10% Similarity=-0.044 Sum_probs=119.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCC
Q 008454 305 ISGHCNKGLLSLAMKFKNLMEKNGIQPN----------------VITFNTLIFGFCKKGKLHEANRIFSEMKATN-VSPN 367 (565)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~ 367 (565)
...+.+.|++++|.+.+..+.+...... ..++..+...|.+.|++++|.+.+..+...- ...+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456777888888888888877542211 1235667788888888888888887765421 1111
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC
Q 008454 368 V----VTYNTLINGYGQVGNSEMGASLYEEMLRN----GIKV-DILTYNALILGLCKEGKTKKAAYLVKDLDKN----SL 434 (565)
Q Consensus 368 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~ 434 (565)
. ...+.+...+...|+.++|..+++..... +..+ -..++..+...|...|++++|..+++++... +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11222333334557777887777766532 2222 2456677777777788888887777766432 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 435 VP-NASTYSALITGQCVRKNSERAFQLYKSMIRS--GCRPN----KHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 435 ~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
.+ ....|..++..|...|++++|..+++..... .+..+ ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1335677777777777777777777776542 11111 23455555566667777777777766655
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.11 E-value=2.8e-05 Score=62.51 Aligned_cols=95 Identities=6% Similarity=0.035 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI--SPN----VYTLNMV 269 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~~~l 269 (565)
+..+...+...|++++|+..|++..+.... +...+..+...+...|++++|...++...+... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 333444444444444444444444443211 344444444444444444444444444433211 011 3344444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 008454 270 MHAFCKLGIIERAVEVFKNMES 291 (565)
Q Consensus 270 i~~~~~~g~~~~a~~~~~~m~~ 291 (565)
...+...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555444
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=0.00017 Score=59.26 Aligned_cols=97 Identities=10% Similarity=-0.086 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008454 403 ILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPN----ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEM 478 (565)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 478 (565)
...+..+...+...|++++|...|++..+.. |+ ...|..+...+...|++++|+..+++.++.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 4444445555555555555555555554432 22 3344444555555555555555555555432 223444455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 479 LMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
+..++...|++++|...|++.++.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555555443
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=0.00011 Score=60.41 Aligned_cols=100 Identities=17% Similarity=0.043 Sum_probs=76.3
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH
Q 008454 190 DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI----IESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYT 265 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 265 (565)
+.+...+..+...+...|++++|++.|++..+.. |+ ...+..+...+...|++++|+..++...+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 3456677788888888889999988888888765 44 5677777888888888888888888876653 235667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 266 LNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
+..+..++...|++++|.+.|++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777788888888888888877764
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.10 E-value=3.2e-05 Score=60.15 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAP--DSIILSELYSG 517 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~ 517 (565)
.+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...++++.+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 44555556666666666666666666653 3445566666666666677777777776666542 22 35566666666
Q ss_pred HHhc-CCHHHHHHHHHHHHHC
Q 008454 518 LHHC-GKDELAMKLFRKMEIR 537 (565)
Q Consensus 518 ~~~~-g~~~~A~~~~~~m~~~ 537 (565)
+.+. |++++|.+.+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6777 7777777777666544
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.09 E-value=2.5e-05 Score=62.41 Aligned_cols=91 Identities=8% Similarity=-0.076 Sum_probs=45.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..|++..+... -+...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 344444555555555555555544322 445555555555555555555555555544321 134444555555555555
Q ss_pred HHHHHHHHHHHHh
Q 008454 279 IERAVEVFKNMES 291 (565)
Q Consensus 279 ~~~a~~~~~~m~~ 291 (565)
+++|+..+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=2.7e-05 Score=65.19 Aligned_cols=132 Identities=16% Similarity=0.059 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLV-PN----ASTYSALITGQCVRKNSERAFQLYKSMIRSGC-RPN----KH 474 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~ 474 (565)
++..+...+...|++++|...+++..+.... .+ ...+..+...+...|++++|.+.+++.++..- ..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555566666666555554332100 01 13456666666777777777777776654210 011 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 475 IFEMLMSTFCQNEDFDRAAEVLLEMLEK----CMA-PDSIILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
++..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666677777788888888887776543 111 1124566777788888888888888887654
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=5.5e-05 Score=60.30 Aligned_cols=85 Identities=14% Similarity=0.006 Sum_probs=33.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 448 QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELA 527 (565)
Q Consensus 448 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 527 (565)
+.+.|++++|+..++++++.. +.+...|..+..++...|++++|+..++++++... -+...+..+..++...|++++|
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 334444444444444444332 22333344444444444444444444444443311 1233333444444444444444
Q ss_pred HHHHHHH
Q 008454 528 MKLFRKM 534 (565)
Q Consensus 528 ~~~~~~m 534 (565)
...+++.
T Consensus 105 ~~~~~~a 111 (121)
T 1hxi_A 105 LASLRAW 111 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=7.9e-05 Score=74.88 Aligned_cols=137 Identities=8% Similarity=-0.045 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 368 VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITG 447 (565)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 447 (565)
...|..+...+.+.|++++|...|++..+....... + . .+... +... -....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~----------~-~~~~~----~~~~----~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L----------S-EKESK----ASES----FLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C----------C-HHHHH----HHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C----------C-hHHHH----HHHH----HHHHHHHHHHHH
Confidence 345566666667777777777777766653221110 0 0 00000 0000 002344444555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 448 QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELA 527 (565)
Q Consensus 448 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 527 (565)
|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++++.. +-+...+..+..++.+.|+.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555442 2334445555555555555555555555554431 11233444444445544544443
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.97 E-value=5.1e-05 Score=76.67 Aligned_cols=119 Identities=15% Similarity=0.034 Sum_probs=61.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 341 FGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTK 420 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (565)
..+.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 34455566666666666665542 334555566666666666666666666666655322 4555555666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 008454 421 KAAYLVKDLDKNSLVPNASTYSALITG--QCVRKNSERAFQLYK 462 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~~~~~~A~~~~~ 462 (565)
+|...++++.+.... +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666665543221 22233333333 455555555555555
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=5.2e-05 Score=63.43 Aligned_cols=97 Identities=15% Similarity=0.036 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNS----LVP-NASTYSALITGQCVRKNSERAFQLYKSMIRS----GCR-PNKH 474 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~-p~~~ 474 (565)
++..+...+...|++++|...+++..+.. ..+ ....+..+...+...|++++|.+.+++.++. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34444444455555555555554433210 000 1234555555666666666666666665542 100 1124
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 475 IFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456666677777777777777776654
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.93 E-value=0.00043 Score=55.41 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 441 YSALITGQCVRKNSERAFQLYKSMIRSGCRPN---KHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 441 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
+..+..++...|++++|...|+++++.. +.+ ...+..+..++...|++++|...|+++++
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444431 111 23334444444444444444444444443
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.93 E-value=0.00026 Score=56.70 Aligned_cols=62 Identities=13% Similarity=-0.002 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI---IESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
.++..+..++.+.|++++|+..|+++.+.... + ..++..+..++...|++++|...|+.+.+
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555555555543322 1 34444555555555555555555555544
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.93 E-value=0.00011 Score=73.91 Aligned_cols=158 Identities=10% Similarity=-0.041 Sum_probs=85.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008454 312 GLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLY 391 (565)
Q Consensus 312 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (565)
+++++|...++...+.. +-....|..+...+.+.|++++|+..|++..+.. |+...+ . .+...
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~--- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESK--- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHH---
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHH---
Confidence 34455555444333221 1146678888999999999999999999988742 221000 0 00000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008454 392 EEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRP 471 (565)
Q Consensus 392 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 471 (565)
+... .....|..+..+|.+.|++++|+..++++.+.... +...|..+..+|...|++++|+..|+++++.. +-
T Consensus 311 -~~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~ 383 (457)
T 1kt0_A 311 -ASES----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQ 383 (457)
T ss_dssp -HHHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred -HHHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 0000 01244555566666666666666666666554332 45556666666666666666666666666542 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 008454 472 NKHIFEMLMSTFCQNEDFDRAA 493 (565)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~A~ 493 (565)
+...+..+..++.+.++.+++.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.90 E-value=0.00013 Score=70.84 Aligned_cols=139 Identities=15% Similarity=0.059 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008454 369 VTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQ 448 (565)
Q Consensus 369 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 448 (565)
..+..+...+.+.|++++|...|++..+.- +.. ......+++. +.. .-+...|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HHH-HHHHHHHHHHHHHH
Confidence 445666666777777777777777666420 000 0000000000 010 01344566677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 449 CVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAM 528 (565)
Q Consensus 449 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 528 (565)
.+.|++++|++.++++++.. +.+...|..+..++...|++++|...|+++++.. +.+...+..+...+...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777653 3456667777777777777777777777777653 224556666666666666665554
Q ss_pred H
Q 008454 529 K 529 (565)
Q Consensus 529 ~ 529 (565)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.89 E-value=0.00066 Score=69.87 Aligned_cols=174 Identities=10% Similarity=-0.010 Sum_probs=128.1
Q ss_pred CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 207 KKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSER----------VDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL 276 (565)
Q Consensus 207 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 276 (565)
...++|++.++++...+.. +..+|+.--..+...++ ++++++.++.+.+...+ +..+|+.-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3456778999998887755 67788877777777666 88888888888876533 677787777777778
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-------
Q 008454 277 G--IIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG-LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKK------- 346 (565)
Q Consensus 277 g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~------- 346 (565)
| +++++++.++++.+.... +..+|+.-...+.+.| .++++++.++++.+..+. |..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 8 668888888888887654 7888888777777778 788888888888876543 777787777666653
Q ss_pred -------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008454 347 -------GKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSE 385 (565)
Q Consensus 347 -------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 385 (565)
+.++++++.+++..... +-|...|..+...+.+.++.+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45678888887777654 456667777666666666533
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.87 E-value=4e-05 Score=77.47 Aligned_cols=120 Identities=12% Similarity=0.062 Sum_probs=64.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008454 376 NGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSE 455 (565)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 455 (565)
..+.+.|++++|.+.+++..+.... +...|..+..+|.+.|++++|...+++..+.... +...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 3445566666666666666654322 4556666666666666666666666666655332 4555666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 008454 456 RAFQLYKSMIRSGCRPNKHIFEMLMST--FCQNEDFDRAAEVLLE 498 (565)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~ 498 (565)
+|.+.|+++++.. +-+...+..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6666666666542 2222333333333 5555666666555543
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.84 E-value=0.00022 Score=69.34 Aligned_cols=140 Identities=11% Similarity=-0.025 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILG 412 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 412 (565)
...+..+...+.+.|++++|++.|++..+.- +.. ......+.+. +. ...+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HH-HHHHHHHHHHHHHH
Confidence 5668888899999999999999999887620 000 0001111111 00 01134566777777
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 492 (565)
|.+.|++++|...++++.+.... +...|..+..+|...|++++|++.|+++++.. +.+...+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777765433 56677777777777788888888777777753 33556666666666666665555
Q ss_pred HH
Q 008454 493 AE 494 (565)
Q Consensus 493 ~~ 494 (565)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.84 E-value=0.00025 Score=59.72 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 439 STYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 439 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
..|..+..+|.+.|++++|+..++.+++.. +.+...|..+..++...|++++|...|++.++.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 456667777777777777777777777764 445667777777777777777777777777765
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.82 E-value=0.0013 Score=67.69 Aligned_cols=175 Identities=5% Similarity=-0.088 Sum_probs=139.1
Q ss_pred CCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCC
Q 008454 154 RKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKK----------FRNATDTFCQMRDYG 223 (565)
Q Consensus 154 ~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~ 223 (565)
..-++|.+.+++++.. .|.+..+|+.--.++...|+ ++++++.++.+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~-------------------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~ 103 (567)
T 1dce_A 43 ELDESVLELTSQILGA-------------------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 103 (567)
T ss_dssp CCSHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHH-------------------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC
Confidence 3445678888888776 44566677777677776676 999999999999988
Q ss_pred CCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHH
Q 008454 224 FLPIIESCNKFLSSLLDSE--RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG-IIERAVEVFKNMESMGFIPSVTT 300 (565)
Q Consensus 224 ~~p~~~~~~~ll~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~ 300 (565)
.+ +..+|+.-.-.+.+.+ +++++++.++.+.+... -|..+|+.-...+.+.| .++++++.++++.+..+. |..+
T Consensus 104 pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~sa 180 (567)
T 1dce_A 104 PK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSS 180 (567)
T ss_dssp TT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHH
T ss_pred CC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccH
Confidence 66 8899999999999999 67999999999998754 38888988888888889 899999999999987655 8888
Q ss_pred HHHHHHHHHhc--------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 301 YNTLISGHCNK--------------GLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 301 ~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 351 (565)
|+.....+.+. +.++++++.+++...... -+..+|.-+-..+.+.++.++
T Consensus 181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 98877777663 457889999988887643 377888877777777666433
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.82 E-value=4.6e-05 Score=60.31 Aligned_cols=61 Identities=15% Similarity=0.013 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
.+..+..+|...|++++|...|+++.+.... +...+..+..++...|++++|+..+++.++
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444333222 233344444444444444444444444433
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.76 E-value=6.5e-05 Score=59.40 Aligned_cols=86 Identities=12% Similarity=-0.009 Sum_probs=59.1
Q ss_pred cCChHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008454 206 RKKFRNATDTFCQMRDYGF--LPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAV 283 (565)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 283 (565)
.|++++|+..|++..+.+. +.+..++..+...+...|++++|+..|++..+... -+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 4777888888888877541 22456777777788888888888888888776542 25667777777777888888888
Q ss_pred HHHHHHHhC
Q 008454 284 EVFKNMESM 292 (565)
Q Consensus 284 ~~~~~m~~~ 292 (565)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 887776654
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.75 E-value=0.00044 Score=58.15 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-------C----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRS-------G----------CRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
.+......+.+.|++++|+..|.+.++. . -+.+...|..+..++.+.|++++|...++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555555666666666666655543 0 0223467888999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 008454 503 CMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGF 544 (565)
Q Consensus 503 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 544 (565)
. +.+...|..+..+|...|++++|...|++..+. .|+..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 4 346788999999999999999999999999776 45544
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.66 E-value=0.00087 Score=55.37 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 008454 441 YSALITGQCVRKNSERAFQLYKSMIRSGCRPN--------K-----HIFEMLMSTFCQNEDFDRAAEVLLEMLEK----- 502 (565)
Q Consensus 441 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 502 (565)
+......+.+.|++++|+..|++.++.. |+ . ..|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 3444455566666666666666666542 22 2 27777777888888888888888887764
Q ss_pred CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhHHHHH
Q 008454 503 CMAPD-SIIL----SELYSGLHHCGKDELAMKLFRKMEI-----RGLLPKGFDKLRTI 550 (565)
Q Consensus 503 ~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll 550 (565)
.+.|+ ...| .....++...|++++|+..|++..+ .|+.+........+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 11444 3466 7788888888888888888888754 35555544444333
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=0.00013 Score=70.12 Aligned_cols=148 Identities=9% Similarity=-0.031 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLING 377 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 377 (565)
...+..+...+.+.|++++|...|++.... .|+... +...|+++++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 555666777777788888888888877664 233221 112233333332221 1255666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 008454 378 YGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITG-QCVRKNSER 456 (565)
Q Consensus 378 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~~~ 456 (565)
|.+.|++++|...+++..+... .+...|..+..+|...|++++|...|+++.+.... +...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777666532 25666666777777777777777777766554221 22333333333 122344455
Q ss_pred HHHHHHHHHH
Q 008454 457 AFQLYKSMIR 466 (565)
Q Consensus 457 A~~~~~~m~~ 466 (565)
+..+|..|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 5556665554
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.65 E-value=0.00086 Score=55.43 Aligned_cols=97 Identities=9% Similarity=-0.060 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVP------N-----ASTYSALITGQCVRKNSERAFQLYKSMIRS-----GC 469 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~~ 469 (565)
+......+.+.|++++|...|++..+..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3445555556666666666666655432210 2 226777777788888888888888887765 11
Q ss_pred CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 470 RPN-KHIF----EMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 470 ~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
.|+ ...| .....++...|++++|+..|++.++.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344 4567 78888889999999999999888764
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.65 E-value=0.001 Score=54.22 Aligned_cols=110 Identities=6% Similarity=-0.014 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 008454 208 KFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK----LGIIERAV 283 (565)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 283 (565)
++++|++.|++..+.|. ...+ +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~---~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE---MFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC---Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45555555655555541 1222 4444444455555666666655543 44555555555555 55666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 008454 284 EVFKNMESMGFIPSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNG 328 (565)
Q Consensus 284 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 328 (565)
+.|++..+.| +...+..|...|.. .++.++|..++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665553 45555555555555 566666666666666554
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.65 E-value=0.0013 Score=53.68 Aligned_cols=111 Identities=10% Similarity=-0.074 Sum_probs=92.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHH
Q 008454 242 ERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCN----KGLLSLA 317 (565)
Q Consensus 242 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a 317 (565)
+++++|++.|++..+.| .++.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999998887 33333 6666777788899999999998875 77888888888888 7899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCC
Q 008454 318 MKFKNLMEKNGIQPNVITFNTLIFGFCK----KGKLHEANRIFSEMKATN 363 (565)
Q Consensus 318 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 363 (565)
.+++++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999999875 67788888888888 889999999999998876
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.62 E-value=0.00014 Score=69.85 Aligned_cols=149 Identities=13% Similarity=-0.007 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 368 VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITG 447 (565)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 447 (565)
...+..+...+.+.|++++|...|++..+. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 556777888888999999999999998874 233321 122333333332221 1367788888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHH
Q 008454 448 QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSG-LHHCGKDEL 526 (565)
Q Consensus 448 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~ 526 (565)
|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++++... -+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988864 45678888889999999999999999998876522 134445555444 334566778
Q ss_pred HHHHHHHHHHC
Q 008454 527 AMKLFRKMEIR 537 (565)
Q Consensus 527 A~~~~~~m~~~ 537 (565)
+..+|++|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 88888888644
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.56 E-value=0.00033 Score=70.35 Aligned_cols=125 Identities=9% Similarity=-0.055 Sum_probs=74.3
Q ss_pred HHHcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKN---SLVP----NASTYSALITGQCVRKNSERAFQLYKSMIRS-----G-CRPN-KHIFEM 478 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~---~~~p----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~ 478 (565)
+...|++++|..++++..+. -+.+ ...+++.|...|...|++++|..++++.++. | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666666666655331 1111 1235677777777777777777777666542 2 0122 345677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 479 LMSTFCQNEDFDRAAEVLLEMLEK-----CMA-PD-SIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~~~~~-----~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
|...|...|++++|..+++++++. |.. |+ ..+.+.+..++...|++++|..+|+++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766532 211 11 224455566666777788888888777653
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.51 E-value=0.00056 Score=53.57 Aligned_cols=67 Identities=16% Similarity=0.019 Sum_probs=51.8
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
.+.++..+..+...|...|++++|+..|++..+.+.. +...|..+...+...|++++|...|+...+
T Consensus 15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456777888888888888888888888888776533 567778888888888888888888887764
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00011 Score=57.10 Aligned_cols=89 Identities=10% Similarity=0.045 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HHH
Q 008454 438 ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPD-------SII 510 (565)
Q Consensus 438 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~ 510 (565)
...+..+...+...|++++|++.|++.++.. +.+...+..+..++...|++++|...++++++. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 4455666666667777777777777776653 445666666677777777777777777777664 233 334
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 008454 511 LSELYSGLHHCGKDELAMK 529 (565)
Q Consensus 511 ~~~li~~~~~~g~~~~A~~ 529 (565)
+..+..++...|+.++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHhHhhhHh
Confidence 4444444544444444433
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.47 E-value=0.00073 Score=52.90 Aligned_cols=78 Identities=10% Similarity=-0.029 Sum_probs=42.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 422 AAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 422 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
|...|++..+.... +...+..+...+...|++++|+..|++.++.. +.+...|..+..++...|++++|...|++.++
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445554443322 44555555555556666666666666555543 33445555555556666666666666655544
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00022 Score=55.27 Aligned_cols=90 Identities=10% Similarity=-0.047 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC------HHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN------VYTLNM 268 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~------~~~~~~ 268 (565)
.+..+...+...|++++|++.|++..+.... +...+..+..++...|++++|+..|++..+.... + ...+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 3444455555555555555555555444322 4455555555555555555555555555443211 1 333444
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 008454 269 VMHAFCKLGIIERAVEVF 286 (565)
Q Consensus 269 li~~~~~~g~~~~a~~~~ 286 (565)
+..++...|+.+.|.+.+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 444444555544444333
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.39 E-value=0.00077 Score=67.70 Aligned_cols=125 Identities=12% Similarity=-0.032 Sum_probs=75.6
Q ss_pred HHhcCChHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCC-CC-HHHHHH
Q 008454 378 YGQVGNSEMGASLYEEMLRN-----GI-KV-DILTYNALILGLCKEGKTKKAAYLVKDLDK-----NSLV-PN-ASTYSA 443 (565)
Q Consensus 378 ~~~~g~~~~A~~~~~~m~~~-----~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~-p~-~~~~~~ 443 (565)
+...|++++|..++++..+. |. .| ...+++.|...|...|++++|..++++..+ .|.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566677776666665532 11 11 234566777777777777777777666542 1211 11 235777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 444 LITGQCVRKNSERAFQLYKSMIRS---GCRPN----KHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 444 li~~~~~~~~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
|...|...|++++|..+++++++. -+.|+ ..+.+.+..++...+.+++|+.+++++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777778877777777776642 01122 234556666677777888888888877653
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.33 E-value=0.0022 Score=47.27 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA 272 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 272 (565)
...+..+...+...|++++|+..|++..+.... +...+..+...+...|++++|...|++..+.. +.+...+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344555556666666666666666666554322 45556666666666666666666666655532 1234455554444
Q ss_pred HHH
Q 008454 273 FCK 275 (565)
Q Consensus 273 ~~~ 275 (565)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.31 E-value=0.0032 Score=46.34 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLH 519 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 519 (565)
.+..+...+...|++++|+..+++.++.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44445555555555555555555555542 2344455555555555555666655555555542 123344444444433
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.22 E-value=0.00084 Score=55.35 Aligned_cols=59 Identities=10% Similarity=0.196 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 454 SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN-----------EDFDRAAEVLLEMLEKCMAPDSIILSELY 515 (565)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li 515 (565)
+++|+..|++.++.. +-+..+|..+..+|... |++++|.+.|+++++. .|+...|...+
T Consensus 62 ~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 62 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 346666666666553 33445556666666554 3677777777777663 45544444333
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.22 E-value=0.0012 Score=50.29 Aligned_cols=67 Identities=12% Similarity=0.030 Sum_probs=55.4
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
.|.++.++..+...|...|++++|+..|++..+.+.. +..+|..+..+|...|++++|.+.|++..+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3457788888999999999999999999999887644 677888899999999999999999888764
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.08 E-value=0.0017 Score=53.56 Aligned_cols=108 Identities=6% Similarity=-0.052 Sum_probs=55.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 345 KKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 345 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (565)
+.+.+++|.+.++...+.. +.+...|..+..++...++++.+...+ +.+++|+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al-------------------------~~~~eAi~ 67 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK-------------------------QMIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH-------------------------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH-------------------------hHHHHHHH
Confidence 3445556666666555543 345555555555555554433111100 01335555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008454 425 LVKDLDKNSLVPNASTYSALITGQCVR-----------KNSERAFQLYKSMIRSGCRPNKHIFEMLMS 481 (565)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~-----------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 481 (565)
.|++..+.+.. +...|..+..+|... |++++|++.|+++++. .|+...|...+.
T Consensus 68 ~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 68 KFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 55555554332 444555555555444 4677777777777775 465555544433
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.92 E-value=0.0049 Score=46.71 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 008454 137 SLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTF 216 (565)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 216 (565)
+.+...+..+..++...|++++|...++++++. .+.++.+|..+..+|...|++++|++.|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 64 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET-------------------DPDYVGTYYHLGKLYERLDRTDDAIDTY 64 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------STTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 357788999999999999999999999999987 4557789999999999999999999999
Q ss_pred HHHHHC
Q 008454 217 CQMRDY 222 (565)
Q Consensus 217 ~~~~~~ 222 (565)
++..+.
T Consensus 65 ~~al~l 70 (100)
T 3ma5_A 65 AQGIEV 70 (100)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998763
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.79 E-value=0.091 Score=56.68 Aligned_cols=126 Identities=12% Similarity=0.054 Sum_probs=68.8
Q ss_pred HcCCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 008454 239 LDSERVDIALG-FYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLA 317 (565)
Q Consensus 239 ~~~~~~~~A~~-~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 317 (565)
...+++++|.+ ++..+ ++......++..+.+.|..++|+++.++-. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 34566666655 43111 112223556666667777777765553111 112334556777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 318 MKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 318 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
+++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+...++-+.....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7765432 2566777777777777777777777776642 233444444556555555444444433
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.62 E-value=0.1 Score=56.27 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=45.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 379 GQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 379 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 3445555555543322 2445556666666666666666666655432 333333344445544444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
++-+.+...|- ++....+|.+.|++++|.+++.+
T Consensus 728 ~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 728 TLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444333321 12222334444555555554433
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.57 E-value=0.058 Score=51.13 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 437 NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILS 512 (565)
Q Consensus 437 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (565)
+...|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++... .|...+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 55566666655555677777777777777664 56666666666666677777777777666664 34444443
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.50 E-value=0.22 Score=47.22 Aligned_cols=72 Identities=15% Similarity=0.004 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008454 296 PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTY 371 (565)
Q Consensus 296 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 371 (565)
.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 355556555555555566666666666666653 45555555556666666666666666666554 3444443
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.36 E-value=0.013 Score=43.91 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=31.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 446 TGQCVRKNSERAFQLYKSMIRSGCRPNKH-IFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
..+...|++++|++.++++++.. +.+.. .+..+..++...|++++|...|+++++.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455566666666666665542 23344 5555555666666666666666666554
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.35 E-value=0.0094 Score=58.76 Aligned_cols=85 Identities=9% Similarity=0.033 Sum_probs=50.5
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHHH
Q 008454 451 RKNSERAFQLYKSMIRS---GCRPN----KHIFEMLMSTFCQNEDFDRAAEVLLEMLEK-----C-MAPDS-IILSELYS 516 (565)
Q Consensus 451 ~~~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~li~ 516 (565)
.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..+++++++. | -.|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666665542 11122 345666777777777777777777666532 1 12222 35677777
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 008454 517 GLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 517 ~~~~~g~~~~A~~~~~~m~ 535 (565)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777777654
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.19 E-value=0.024 Score=55.86 Aligned_cols=88 Identities=15% Similarity=0.033 Sum_probs=51.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHH
Q 008454 448 QCVRKNSERAFQLYKSMIRSG---CRPN----KHIFEMLMSTFCQNEDFDRAAEVLLEMLEK-----C-MAPDS-IILSE 513 (565)
Q Consensus 448 ~~~~~~~~~A~~~~~~m~~~~---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~ 513 (565)
+...|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|+.+++++++. | ..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445566666666666666431 1121 345666666677777777777776666432 1 11222 35666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 008454 514 LYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 514 li~~~~~~g~~~~A~~~~~~m~ 535 (565)
|...|...|++++|..++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6777777777777777766654
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.18 E-value=0.012 Score=44.07 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=44.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPIIE-SCNKFLSSLLDSERVDIALGFYKEMRRNR 258 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 258 (565)
....+.+.|++++|++.|+++.+.... +.. .+..+...+...|++++|...|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455677778888888888888776533 566 77788888888888888888888877653
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.10 E-value=0.046 Score=40.60 Aligned_cols=68 Identities=9% Similarity=-0.099 Sum_probs=53.7
Q ss_pred CCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 008454 190 DSSPLVFDLLFKTYAHRKK---FRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNR 258 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 258 (565)
+.++..+..+..++...++ .++|..+|++..+.+.. ++.+...+...+.+.|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4577777788887765554 68888888888887654 77888888888888888888888888888764
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.02 E-value=0.057 Score=40.09 Aligned_cols=70 Identities=16% Similarity=0.072 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhCCC---chhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHH
Q 008454 137 SLTLETHSIVLHILTKNRK---FKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNAT 213 (565)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~---~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 213 (565)
+.+.+.+..+..++...++ .++|..++++.++. .+.++.+...+...+.+.|++++|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-------------------dp~~~rA~~~lg~~~~~~g~y~~Ai 63 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-------------------EPYNEAALSLIANDHFISFRFQEAI 63 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-------------------CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3577888888888875554 79999999999987 5678889999999999999999999
Q ss_pred HHHHHHHHCCCC
Q 008454 214 DTFCQMRDYGFL 225 (565)
Q Consensus 214 ~~~~~~~~~~~~ 225 (565)
..|+++.+.+..
T Consensus 64 ~~w~~~l~~~p~ 75 (93)
T 3bee_A 64 DTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHTCCCT
T ss_pred HHHHHHHhhCCC
Confidence 999999987643
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.95 E-value=0.029 Score=55.29 Aligned_cols=86 Identities=8% Similarity=0.014 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHH
Q 008454 416 EGKTKKAAYLVKDLDK---NSLVPN----ASTYSALITGQCVRKNSERAFQLYKSMIRS-----G-CRPN-KHIFEMLMS 481 (565)
Q Consensus 416 ~g~~~~A~~~~~~~~~---~~~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li~ 481 (565)
.|++++|..++++..+ .-+.|+ ..+++.|..+|...|++++|+.+++++++. | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4667777777776543 212222 346777888888888888888888777652 2 1222 356788888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 008454 482 TFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~ 501 (565)
.|...|++++|..+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888887754
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.95 E-value=0.059 Score=53.10 Aligned_cols=92 Identities=11% Similarity=-0.030 Sum_probs=67.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHH
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNS---LVPN----ASTYSALITGQCVRKNSERAFQLYKSMIRS-----G-CRPN-KHI 475 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~ 475 (565)
+..+.+.|++++|..++++..+.. +.|+ ..+++.|..+|...|++++|+.+++++++. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444557788888888888876431 2222 346888888898999999999988887752 2 1222 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 476 FEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 476 ~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
++.|...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888899999999999999888764
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.80 E-value=0.51 Score=37.04 Aligned_cols=61 Identities=20% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 407 NALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSG 468 (565)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 468 (565)
...++.+...|+.++-.+++.++.. +..|++...-.+..+|.+.|+..+|.+++.++-++|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3344444555555555555555322 123445555555555555555555555555555544
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.35 E-value=0.091 Score=42.73 Aligned_cols=83 Identities=11% Similarity=0.087 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 008454 418 KTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRK---NSERAFQLYKSMIRSGCRP--NKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A 492 (565)
....+.+.|.+..+.+. ++..+.-.+..++++.+ +.++++.++++..+.. .| +...+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34556666666655554 46666666666777766 5557777777777753 23 234445555566777777777
Q ss_pred HHHHHHHHHc
Q 008454 493 AEVLLEMLEK 502 (565)
Q Consensus 493 ~~~~~~~~~~ 502 (565)
.++++.+++.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777764
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.18 E-value=1.2 Score=37.19 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=22.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 309 CNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEM 359 (565)
Q Consensus 309 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 359 (565)
...|+++.|.++.+.+ -+...|..|.+.....|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 13445555555555555555555555444
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.12 E-value=0.16 Score=38.42 Aligned_cols=75 Identities=12% Similarity=-0.035 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (565)
-+...+..+...+...+++..|..+++..++....... .....+.++..|..+|.+.|+++.|+..++
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~------------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~ 70 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI------------STIDKVSVLDYLSYAVYQQGDLDKALLLTK 70 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC------------CcccHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 46678889999999999999999999998875110000 012356778889999999999999999999
Q ss_pred HHHHCCC
Q 008454 218 QMRDYGF 224 (565)
Q Consensus 218 ~~~~~~~ 224 (565)
++.+..+
T Consensus 71 ~al~l~P 77 (104)
T 2v5f_A 71 KLLELDP 77 (104)
T ss_dssp HHHHHCT
T ss_pred HHHhcCC
Confidence 9987653
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.02 E-value=0.19 Score=40.84 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 008454 385 EMGASLYEEMLRNGIKVDILTYNALILGLCKEG---KTKKAAYLVKDLDKNSLVP--NASTYSALITGQCVRKNSERAFQ 459 (565)
Q Consensus 385 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~A~~ 459 (565)
..+.+.|.+..+.+. ++..+...+..++++.+ +.+++..+|+++.+.+ .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555555444 46666666777777766 4557777777766643 12 23344555556677777777777
Q ss_pred HHHHHHHc
Q 008454 460 LYKSMIRS 467 (565)
Q Consensus 460 ~~~~m~~~ 467 (565)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777765
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.82 E-value=0.31 Score=44.26 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHCCCC--CCH
Q 008454 192 SPLVFDLLFKTYAHR-----KKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDS-ERVDIALGFYKEMRRNRIS--PNV 263 (565)
Q Consensus 192 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~A~~~~~~m~~~~~~--p~~ 263 (565)
+...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.+++.+.+++....... |+.
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSC
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCh
Confidence 345788888888884 89999999999998876433477777888888884 8889999999998887655 665
Q ss_pred HHHHHH
Q 008454 264 YTLNMV 269 (565)
Q Consensus 264 ~~~~~l 269 (565)
...+.+
T Consensus 278 ~lan~~ 283 (301)
T 3u64_A 278 KLLVIL 283 (301)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 554443
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.79 E-value=0.33 Score=36.63 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
.+..|..++.+.|+++.|..+++++.+
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344444444444444444444444443
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.56 E-value=0.37 Score=43.82 Aligned_cols=107 Identities=14% Similarity=0.130 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCH
Q 008454 419 TKKAAYLVKDLDKNSLVPN---ASTYSALITGQCV-----RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN-EDF 489 (565)
Q Consensus 419 ~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~ 489 (565)
...|..++++..+. .|+ ...|..+...|.. .|+.++|.+.|++.++.+-.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777764 344 4567777777777 388888888888888764111366777777777774 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 490 DRAAEVLLEMLEKCMA--PDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 490 ~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
+++.+.+++.+..... |+....+.+ .-++|..++.++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhH
Confidence 8888888888876555 554444433 3355666655543
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.50 E-value=1.8 Score=36.07 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=61.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 379 GQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 379 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
...|+++.|.++.+++ -+...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4567777777776655 2566777777777777777777777776542 344444455566666655
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (565)
++-+.....|- ++.....+...|+++++.++|.+.
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55555544431 344444555677777777776443
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.18 E-value=0.92 Score=36.44 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=41.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 382 GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALIT 446 (565)
Q Consensus 382 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 446 (565)
+|.++|.++|+.+.+.+-.. ...|......-.+.|++..|.+++......+.+| .......++
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 67778888888776553333 6666666666677888888888888877766553 333444433
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.01 E-value=1.8 Score=34.08 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=90.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 379 GQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 379 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
.-.|..++..++..+.... .+..-||.+|--....-+-+-..++++.+-+. .|. ...|+.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 3457777777777777664 25566666666555555555555555554331 121 1234444444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 538 (565)
..+-.+ ..+....+..+..+...|+-++-.+++..+.. +.+|+....-.+..+|.+.|+..+|-+++.+.-++|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 444333 23445566777778888888888888888644 356778888888888888888888888888888888
Q ss_pred CC
Q 008454 539 LL 540 (565)
Q Consensus 539 ~~ 540 (565)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.81 E-value=0.46 Score=38.16 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=56.3
Q ss_pred CCCChHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCcCH-HHHHHHHHH------HHcCCChHHHHHHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKF------RNATDTFCQMRDYGFLPII-ESCNKFLSS------LLDSERVDIALGFYKEMR 255 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~p~~-~~~~~ll~~------~~~~~~~~~A~~~~~~m~ 255 (565)
.+.++.+|-..+...-+.|++ ++.+++|++.... ++|+. ..|...+.. +...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 455777777777777777887 7777777777653 33321 111111111 112256666666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 256 RNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI 295 (565)
Q Consensus 256 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 295 (565)
..+-. =...|......=.++|++..|.+++...+..+.+
T Consensus 88 ~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 43211 1444444444445566666666666666665544
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.57 E-value=9.4 Score=41.01 Aligned_cols=150 Identities=14% Similarity=0.133 Sum_probs=64.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCCCHHH-H---HHHHHHHHHc
Q 008454 343 FCKKGKLHEANRIFSEMKATNVSPNVVTYNTLIN--GYGQVGNSEMGASLYEEMLRNGIKVDILT-Y---NALILGLCKE 416 (565)
Q Consensus 343 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~---~~li~~~~~~ 416 (565)
++..|+-+....++..+.+.. +......+.. ++...|+.+.+..+.+.+... .+..+ | .++.-+|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTS
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCC
Confidence 334455555555555544421 2222222222 233456666666666655543 12211 1 1233445555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 008454 417 GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDF-DRAAEV 495 (565)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~ 495 (565)
|+.....+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++...
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 66555555666555431 1122222223333334455455555555444432 33333222333333333332 445555
Q ss_pred HHHHH
Q 008454 496 LLEML 500 (565)
Q Consensus 496 ~~~~~ 500 (565)
+..+.
T Consensus 652 L~~L~ 656 (963)
T 4ady_A 652 LDPLT 656 (963)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55554
No 234
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.33 E-value=3.9 Score=45.83 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=35.0
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhh
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILD 168 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~ 168 (565)
..+.++.+.++..|... +......+..++...|++++|...|++...
T Consensus 824 ~~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 824 LFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HhhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 34567778888777543 344446778889999999999999987643
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.01 E-value=0.71 Score=36.01 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=10.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 008454 480 MSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~~ 501 (565)
.-++.+.|++++|.++++.+++
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444455555444444444
No 236
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.97 E-value=2.9 Score=46.85 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008454 300 TYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN----VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLI 375 (565)
Q Consensus 300 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 375 (565)
-|..++..+-+.|.++.+.++-....+....-+ ...|..+.+.+...|++++|...+-.+..... -......++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 455566666666666666666555444321111 12455566666666666666666666554432 233444555
Q ss_pred HHHHhcC
Q 008454 376 NGYGQVG 382 (565)
Q Consensus 376 ~~~~~~g 382 (565)
..+|..|
T Consensus 979 ~~lce~~ 985 (1139)
T 4fhn_B 979 NQLTKQG 985 (1139)
T ss_dssp HHHHHHC
T ss_pred HHHHhCC
Confidence 5555444
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.56 E-value=8.5 Score=37.78 Aligned_cols=171 Identities=17% Similarity=0.161 Sum_probs=94.7
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCcCHHH--HHHHHHHHHcCCChHHHH--HHHHHHHH--CC-CCC-
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY-GFLPIIES--CNKFLSSLLDSERVDIAL--GFYKEMRR--NR-ISP- 261 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~--~~~ll~~~~~~~~~~~A~--~~~~~m~~--~~-~~p- 261 (565)
.+..+...++..|...|+++...+.+..+... |..+...+ .+.++..+......+... .+.+.+.. .| +-.
T Consensus 54 s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE 133 (445)
T 4b4t_P 54 SSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVE 133 (445)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHH
Confidence 35667778888999999999888877766543 43222211 122223222233322211 11111100 11 111
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC
Q 008454 262 --NVYTLNMVMHAFCKLGIIERAVEVFKNMESM--GFIPS---VTTYNTLISGHCNKGLLSLAMKFKNLMEK----NGIQ 330 (565)
Q Consensus 262 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~ 330 (565)
.......|...+...|++.+|.+++..+... |.... ...+..-++.|...+++..|..++.++.. ....
T Consensus 134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence 1223456677777888888888888887532 22111 34556667777888888888877776532 2122
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 331 PN--VITFNTLIFGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 331 ~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 361 (565)
|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22 23345555666677788777777766643
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.94 E-value=0.87 Score=35.52 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 008454 384 SEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKK---AAYLVKDLDKNSLVP--NASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 384 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~A~ 458 (565)
...+.+-|......|. ++..+-..+..++++..+... ++.+++++.+.+ .| .....-.|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444445554444333 455666666666666665444 667777666543 12 2223444556677777777777
Q ss_pred HHHHHHHHc
Q 008454 459 QLYKSMIRS 467 (565)
Q Consensus 459 ~~~~~m~~~ 467 (565)
+.++.+++.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777775
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.22 E-value=0.98 Score=43.65 Aligned_cols=55 Identities=7% Similarity=0.012 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 479 LMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
++..+...|+++++...++.+... -+.+...|..++.+|.+.|+..+|++.|+++
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444455555555555554443 1224445555555555555555555555544
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.02 E-value=19 Score=38.69 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=73.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHcCC
Q 008454 274 CKLGIIERAVEVFKNMESMGFIPSVTTYN--TLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFN---TLIFGFCKKGK 348 (565)
Q Consensus 274 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~---~li~~~~~~g~ 348 (565)
+-.|+-+....++..+.+.. +..... .+.-++...|+.+.+..+++.+.... .| ..-|. ++.-+|+..|+
T Consensus 501 vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCC
T ss_pred cccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCC
Confidence 34466666666666655431 222222 23333445677777777777766531 11 12222 23345666777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 008454 349 LHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKT-KKAAYLVK 427 (565)
Q Consensus 349 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~ 427 (565)
.....++++.+.... ..++.-...+.-++...|+.+.+.++++.+.+.+ .|.+.--..+..+....|.. .++.+++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 766666777766542 1222222222223334566665666665555432 23333333333333333332 45666666
Q ss_pred HHHh
Q 008454 428 DLDK 431 (565)
Q Consensus 428 ~~~~ 431 (565)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 6654
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.34 E-value=1.5 Score=45.93 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhC------CCCC-CHH---
Q 008454 372 NTLINGYGQVGN-SEMGASLYEEMLRNGIKVDILTYNALILGLCKEG-KTKKAAYLVKDLDKN------SLVP-NAS--- 439 (565)
Q Consensus 372 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~------~~~p-~~~--- 439 (565)
..++..+...++ .+.|..+++++.+.....+......++..+.+.+ +--+|..++.+..+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555555 4778888888877633222222233333333332 222455555544321 0111 110
Q ss_pred -------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 440 -------TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 440 -------~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (565)
....=..-+...|+++.|+++-++.+..- +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 00111122334556666666666655542 333455666666666666666665555443
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.22 E-value=15 Score=36.05 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 242 ERVDIALGFYKEMRR-----NRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 242 ~~~~~A~~~~~~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
++++.|++.+..+.+ .+..........++..|...|+++...+.+..+.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 567777776655543 123334556667777777777777776666555443
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.82 E-value=1.6 Score=45.81 Aligned_cols=125 Identities=14% Similarity=0.068 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcC-ChHHHHHHHHHHHHC------CCCC-CHH-
Q 008454 337 NTLIFGFCKKGK-LHEANRIFSEMKATNVSPNVVTY--NTLINGYGQVG-NSEMGASLYEEMLRN------GIKV-DIL- 404 (565)
Q Consensus 337 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g-~~~~A~~~~~~m~~~------~~~~-~~~- 404 (565)
..++..+...|+ ++.|.++|+++.... |....+ ..++..+.+.+ +--+|.+++.+..+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555555666 688999999998873 433332 23333333333 233566666665431 1111 111
Q ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 405 ---------TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 405 ---------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 464 (565)
....=.+.|...|+++-|+.+-++....... +-.+|..|..+|...|+++.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1222244566789999999999999875332 5779999999999999999999888775
No 244
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.28 E-value=1.8e-05 Score=76.20 Aligned_cols=192 Identities=13% Similarity=0.097 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFC 344 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 344 (565)
.|..+|....+.|.+++-+..+....+..-.|.+ =+.|+-+|++.++..+..+++. .||..-...+.+-|.
T Consensus 85 ~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf 155 (624)
T 3lvg_A 85 SYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCY 155 (624)
T ss_dssp SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHH
Confidence 3444444444444444444444433332212222 1245555555555444322221 234444444555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 345 KKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 345 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (565)
..|.++.|.-+|..+.. |..|...+.+.|++..|.+.-++ .-++.||..+..+|...+.+.-|..
T Consensus 156 ~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 156 DEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp HSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTH
T ss_pred HccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHH
Confidence 55555555444433321 22233333444444444321111 1234455555555555555544433
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008454 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN 486 (565)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 486 (565)
.--.+.-. ++ ....++..|-..|.+++.+.+++..+... ......|+-|.-.|++-
T Consensus 221 cGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 221 CGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred hcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 32222211 11 12234444555666666666665555332 34555666665555543
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.27 E-value=2.4 Score=40.95 Aligned_cols=75 Identities=11% Similarity=0.020 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR-----NRISPNVYTLNMVM 270 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~~~li 270 (565)
...++..+...|++.+|+..++.+...... +...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 445677788889999998888888777644 778888899999999999999988888643 48888877654443
Q ss_pred H
Q 008454 271 H 271 (565)
Q Consensus 271 ~ 271 (565)
.
T Consensus 253 ~ 253 (388)
T 2ff4_A 253 R 253 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.15 E-value=3.1 Score=30.67 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 421 KAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
+..+-++.+...++.|++....+.+++|.+.+++..|+++++-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555443
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.30 E-value=20 Score=32.96 Aligned_cols=165 Identities=10% Similarity=-0.025 Sum_probs=83.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHhCCCCCCHHHHHHHHHH
Q 008454 232 NKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVE----VFKNMESMGFIPSVTTYNTLISG 307 (565)
Q Consensus 232 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~~~li~~ 307 (565)
.++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +++.+.+.+++++......++..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3344455556666666665544221 2334444444333 23444455666666666656655
Q ss_pred HHhcCChh-HHHHHHHHHH----HCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 308 HCNKGLLS-LAMKFKNLME----KNGI--QPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQ 380 (565)
Q Consensus 308 ~~~~g~~~-~a~~~~~~m~----~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 380 (565)
+.....-+ .-.++++++. +.|- .-+...+..+...|.+.|++.+|...|- .|..-|...+..++.-+..
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHH
Confidence 54422111 1123333333 2221 2366778888888899999988888764 1111134455555554444
Q ss_pred c---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 381 V---GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 381 ~---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
. |...++ |...-. .+-.|...|+...|..+++...
T Consensus 178 ~~~~~~~~e~--------------dlf~~R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 178 QVDDIEDSTV--------------AEFFSR-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HTTCCCHHHH--------------HHHHHH-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred hcCCCCcchH--------------HHHHHH-HHHHHHHhcCHHHHHHHHHHHH
Confidence 4 333221 122222 2233456678888887777653
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.45 E-value=9.2 Score=28.22 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 453 NSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELY 515 (565)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 515 (565)
+.-+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.+..+ ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34455566666666667777777777777777777777777777776655 223344565554
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.45 E-value=8.2 Score=30.24 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 401 VDILTYNALILGLCKEGKT---KKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
|+..+--.+..++++..+. .+++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444332 23444444444332111122333334444445555555555444444
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.01 E-value=6.6 Score=30.72 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 421 KAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLM 480 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (565)
+..+-++.+...++.|++......+++|.+.+++..|+++++-...+ +.+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34444555555556666666666666666666666666666655544 233344454444
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.71 E-value=15 Score=28.73 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 454 SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELY 515 (565)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 515 (565)
.-+..+-++.+....+.|++.+....+.+|.+.+|+..|.++|+.+..+ ..+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 3455556666666677788888888888888888888888888777665 333445566554
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.49 E-value=16 Score=28.63 Aligned_cols=69 Identities=6% Similarity=0.062 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 434 LVPNASTYSALITGQCVRKN---SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 434 ~~p~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
..|+..+--.+..++.+..+ ..+++.++.++.+.+-.-....+-.|.-++.+.|++++|.++.+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34555554445555555544 3456777777766541112344555566677777777777777777664
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.94 E-value=13 Score=30.35 Aligned_cols=122 Identities=9% Similarity=0.048 Sum_probs=67.6
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhhcCC----CCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILDSDS----FDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
+..-+..+...+.++.|+.+.+.++.... .-.+..- -.++..+..++...|++.+|...|++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~--------------~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQK--------------YQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHH--------------HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44456677788888888877776554310 0000000 12566788999999999999999999
Q ss_pred HHHC--CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 219 MRDY--GFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMES 291 (565)
Q Consensus 219 ~~~~--~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (565)
..+. .+.....++..+. ....... ......+...-.-+..+|.+.|++++|+.+++.+..
T Consensus 89 ALq~~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 89 ALQQKKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 7542 1111111111110 0000000 011223455555677888899999999999887644
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.02 E-value=19 Score=28.58 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=9.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 008454 446 TGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~m~~ 466 (565)
-++.+.|++++|.++.+.+++
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 334444444444444444444
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.83 E-value=34 Score=31.42 Aligned_cols=81 Identities=11% Similarity=-0.038 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 401 VDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR---KNSERAFQLYKSMIRSGCRPNKHIFE 477 (565)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~ 477 (565)
-|+.....+...|.+.|++.+|...|-.- -.-+...+..++.-+... |...++-- ..-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHH
Confidence 46778888888888888888887766411 001344455554444433 33332211 1112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 008454 478 MLMSTFCQNEDFDRAAEVLLEML 500 (565)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~~~ 500 (565)
.++ -|.-.|+...|..+++...
T Consensus 194 aVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 LVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHH
Confidence 222 2445677777777776654
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.05 E-value=11 Score=30.87 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 402 DILTYNALILGLCKEGKTKKAAYLVKDL 429 (565)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (565)
+...-..+..+|.+.++.++|+.+++.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 3344445666666777777777666654
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.70 E-value=19 Score=35.13 Aligned_cols=95 Identities=9% Similarity=-0.023 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHH----H
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESM--GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEK---NGIQPNVI----T 335 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~----~ 335 (565)
++..+...|.+.|++++|.+.|.++... +..--...+..++..+...+++..+...+.+... .+..++.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4455666666677777777777666643 2222345566666777777777777766666542 22222221 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~ 361 (565)
|.. ..+...+++.+|.+.|-+...
T Consensus 213 ~~g--l~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYG--IHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHH--HGGGGTSCHHHHHHHHHHHHH
T ss_pred HHH--HHHHHhChHHHHHHHHHHHhc
Confidence 111 123346788888887776654
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.60 E-value=58 Score=31.13 Aligned_cols=132 Identities=10% Similarity=0.004 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHH-
Q 008454 228 IESCNKFLSSLLDSERVDIALGFYKEMRRN-RISP---NVYTLNMVMHAFCKL-GIIERAVEVFKNMESMGFIPSVTTY- 301 (565)
Q Consensus 228 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~p---~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~- 301 (565)
..+...+...|.+.|+.++..+++...... +.-+ .......++..+... +..+.-.++..+..+..-. +..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 345566677777777777777776665321 0011 122334445444442 2222223333322211000 11112
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 302 -----NTLISGHCNKGLLSLAMKFKNLMEKNGIQPN-----VITFNTLIFGFCKKGKLHEANRIFSEMK 360 (565)
Q Consensus 302 -----~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 360 (565)
.-++..|...|++.+|.+++..+.+.--..| ...+..-+..|...+++.++...+....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1355556666666666666555554211111 1223334455556666666666665544
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.44 E-value=19 Score=35.04 Aligned_cols=61 Identities=11% Similarity=-0.111 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDY--GFLPIIESCNKFLSSLLDSERVDIALGFYKEMR 255 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 255 (565)
+...+...|.+.|++++|.+.|.++... +...-...+-.+++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556777777888888888888777664 222235666666777777777777776666654
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.27 E-value=52 Score=30.50 Aligned_cols=82 Identities=7% Similarity=-0.070 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008454 400 KVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEML 479 (565)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (565)
.-|......+...|.+.+++.+|...|- . |-.+....|..++..+...+... ..+...-..+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHH
Confidence 3466777778888888888888877763 1 22333355655554444333211 1122222233
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 008454 480 MSTFCQNEDFDRAAEVLLEML 500 (565)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~ 500 (565)
+ -|.-.++...|..+++...
T Consensus 195 L-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 L-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp H-HHHHTTCHHHHHHHHHHHH
T ss_pred H-HHHHhCCHHHHHHHHHHHH
Confidence 3 3444667777777665544
No 261
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=75.14 E-value=0.005 Score=59.68 Aligned_cols=246 Identities=15% Similarity=0.138 Sum_probs=148.5
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM 270 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 270 (565)
..+.+|..|.++....+++.+|++-|-+. -|+..|..++....+.|.+++-...+...++..- +...=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHH
Confidence 46778888999988888888887765333 2555677888888888999988888876655422 334445778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--------------------CC
Q 008454 271 HAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNG--------------------IQ 330 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------------------~~ 330 (565)
.+|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+.... -.
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888887665443332 2455555566777777777777766655443211 02
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 331 PNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALI 410 (565)
Q Consensus 331 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 410 (565)
-++.||..+-.+|...+.+.-|.-.--.+.-. +| -...++..|-..|.+++.+.+++.-... -......|+.|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 25667888888888888776654443333321 11 1223556677778888877777776643 234566777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHhcCCHHHHH
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVP-------NASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p-------~~~~~~~li~~~~~~~~~~~A~ 458 (565)
-.|++- +.++..+.++....+--.| ....|..++-.|++..+++.|.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 766654 3344433333221110011 2224666666666666666544
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.96 E-value=10 Score=33.91 Aligned_cols=114 Identities=20% Similarity=0.134 Sum_probs=77.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhc
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK----HIFEMLMSTFCQN 486 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~ 486 (565)
..+.+.|++++|+.....-++.... |...-..|+.-+|-.|++++|.+-++...+. .|+. ..|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH----
Confidence 4566789999999999888887655 8888889999999999999999988888875 3443 344444433
Q ss_pred CCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 008454 487 EDFDRAAEVLLEMLEKCM-----APDSIILSELYSGLH--HCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 487 g~~~~A~~~~~~~~~~~~-----~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 537 (565)
+..=.+...-+- .....-...++.++. ..|+.++|.++-.+..+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 111122222221 222334555666554 469999999998888654
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.60 E-value=25 Score=29.76 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008454 451 RKNSERAFQLYKSMIRSGCRPN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAP 506 (565)
Q Consensus 451 ~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (565)
.++...+.++|..|..+|+.-. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4447788889999988876544 5567788888888899999999998888887777
No 264
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.06 E-value=29 Score=32.66 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 008454 301 YNTLISGHCNKGLLSLAMKFKNLME 325 (565)
Q Consensus 301 ~~~li~~~~~~g~~~~a~~~~~~m~ 325 (565)
...+|.-|...|+.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4556777777777777777777654
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.86 E-value=9.9 Score=33.96 Aligned_cols=57 Identities=7% Similarity=0.060 Sum_probs=44.8
Q ss_pred HHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008454 148 HILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYG 223 (565)
Q Consensus 148 ~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 223 (565)
..+.+.+++++|++.+..-++. .|.|...-..|++.+|-.|++++|.+-++...+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~-------------------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA-------------------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT-------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-------------------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3456778888888888877776 56677788888888888899998888888877654
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.63 E-value=24 Score=25.95 Aligned_cols=13 Identities=15% Similarity=-0.003 Sum_probs=5.5
Q ss_pred HHcCCHHHHHHHH
Q 008454 414 CKEGKTKKAAYLV 426 (565)
Q Consensus 414 ~~~g~~~~A~~~~ 426 (565)
.+.|++++|..+.
T Consensus 51 mNrG~Yq~Al~l~ 63 (116)
T 2p58_C 51 MNRGDYASALQQG 63 (116)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HcchhHHHHHHhc
Confidence 3444444444333
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=72.17 E-value=35 Score=27.07 Aligned_cols=68 Identities=6% Similarity=0.074 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 435 VPNASTYSALITGQCVRKN---SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 435 ~p~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
.|+..+--.+..++.+..+ ..+++.+++++...+-.-.....-.|.-++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444444444444444443 3345556655555421112233334444555666666666666666553
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.65 E-value=27 Score=25.62 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=7.3
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 008454 345 KKGKLHEANRIFSEMKAT 362 (565)
Q Consensus 345 ~~g~~~~A~~~~~~m~~~ 362 (565)
+.|..+++...+.++..+
T Consensus 80 rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 80 HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HTTCHHHHHHHHHHHHTC
T ss_pred hcccHHHHHHHHHHHHhC
Confidence 334444444444344333
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=71.36 E-value=65 Score=29.87 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 008454 262 NVYTLNMVMHAFCKLGIIERAVEVF 286 (565)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~ 286 (565)
|......+...|.+.+++.+|..-|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4444455555555555555554444
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.25 E-value=28 Score=25.60 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=20.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 308 HCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT 362 (565)
Q Consensus 308 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 362 (565)
+.+.|++++|..+.+.+- .||...|.+|.. .+.|..+++...+.++..+
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 344444444444433222 344444433332 2334444444444444433
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.04 E-value=74 Score=30.37 Aligned_cols=233 Identities=12% Similarity=0.021 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCc---CHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHCCCCCCHHHH--
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDY-GFLP---IIESCNKFLSSLLDSE-RVDIALGFYKEMRRNRISPNVYTL-- 266 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~-- 266 (565)
.....|...|.+.|+.++..+++...... +..+ .......++..+.... ..+.-.++..+..+.... +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34567899999999999999999887653 1112 3455677888887643 344445555554432111 11223
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHH
Q 008454 267 ----NMVMHAFCKLGIIERAVEVFKNMESM--GFIP---SVTTYNTLISGHCNKGLLSLAMKFKNLMEKN--GIQPNVIT 335 (565)
Q Consensus 267 ----~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~ 335 (565)
.-++..|...|++.+|.+++.++.+. .... -...|..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 25788899999999999999888763 1111 1344566678889999999999998877542 22233333
Q ss_pred HHHH----HHHHH-HcCCHHHHHHHHHHHHhC-C-C-CC---CHHHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCCH
Q 008454 336 FNTL----IFGFC-KKGKLHEANRIFSEMKAT-N-V-SP---NVVTYNTLINGYGQVGNSEMGASLYE-EMLRNGIKVDI 403 (565)
Q Consensus 336 ~~~l----i~~~~-~~g~~~~A~~~~~~m~~~-~-~-~~---~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~~~~ 403 (565)
...+ ...+. ..++|..|...|-+.... . . .| +...|..+... . .++..+...++. .....-..|+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l-~~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-M-LGQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-H-TTCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-H-cCCHHHHHHHhccccccccCCccH
Confidence 2222 23345 689999998888766431 1 0 11 11223222222 2 233222222221 11111123455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
..+..++.+| ..+++.+...++....
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHST
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 5566666654 4566766666666543
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.75 E-value=23 Score=26.00 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=5.6
Q ss_pred HHHcCCHHHHHHH
Q 008454 413 LCKEGKTKKAAYL 425 (565)
Q Consensus 413 ~~~~g~~~~A~~~ 425 (565)
+.+.|++++|..+
T Consensus 49 LmNrG~Yq~Al~l 61 (115)
T 2uwj_G 49 LANQGRYQEALAF 61 (115)
T ss_dssp HHHTTCHHHHHGG
T ss_pred HHcchhHHHHHHh
Confidence 3344444444433
No 273
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.69 E-value=1.3e+02 Score=30.77 Aligned_cols=46 Identities=7% Similarity=-0.078 Sum_probs=24.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008454 481 STFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMK 529 (565)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 529 (565)
..+...|....|...|..+.+. . +......+.......|..+.+..
T Consensus 389 ~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 389 RELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHH
Confidence 3456677777777777766653 2 22222333444445555555443
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.56 E-value=53 Score=26.41 Aligned_cols=50 Identities=12% Similarity=0.227 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008454 457 AFQLYKSMIRSGCRPN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAP 506 (565)
Q Consensus 457 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (565)
+.++|..|..+|+--. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555554443222 2334444444445555555555555555544444
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=63.02 E-value=25 Score=28.74 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 008454 210 RNATDTFCQMRDYGFLP-IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVY 264 (565)
Q Consensus 210 ~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 264 (565)
+++.++|..|...|+-. -...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 44777888888887654 35667778888888899999999998888887777554
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=62.74 E-value=94 Score=29.16 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=13.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 407 NALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
..++.-|...|+.++|...++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 445555555555555555555554
No 277
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=62.28 E-value=35 Score=31.35 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 008454 301 YNTLISGHCNKGLLSLAMKFKNLME 325 (565)
Q Consensus 301 ~~~li~~~~~~g~~~~a~~~~~~m~ 325 (565)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456677777777777777776653
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.72 E-value=14 Score=33.09 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=10.0
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 008454 199 LFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~ 217 (565)
.+...++.|+.+....+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 4445566677655444443
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=61.45 E-value=1.5e+02 Score=30.35 Aligned_cols=116 Identities=12% Similarity=-0.009 Sum_probs=61.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------------CCC---------C
Q 008454 378 YGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN------------SLV---------P 436 (565)
Q Consensus 378 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------~~~---------p 436 (565)
..+.|+++.|...|+.|..... ........+..++...|+.++|..+|..+... |.. +
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~ 373 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQ 373 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCS
T ss_pred HHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCCh
Confidence 3345666666666665544211 13333445555555666666666666554321 110 0
Q ss_pred ---CHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008454 437 ---NAST---YSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLL 497 (565)
Q Consensus 437 ---~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 497 (565)
.... --.-+..+...|....|...|..+.+. .+......+.......|..+.+.....
T Consensus 374 ~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 374 NVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0001 112234566788888888888887764 233333444445566777777765543
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.18 E-value=77 Score=25.83 Aligned_cols=54 Identities=13% Similarity=0.283 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 008454 456 RAFQLYKSMIRSGCRPN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSI 509 (565)
Q Consensus 456 ~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 509 (565)
.+.++|..|..+|+--. ...|......+...|++.+|.++|+.-++.+..|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 36667777777765443 4556666667777788888888887777777776444
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.44 E-value=31 Score=29.78 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=12.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 271 HAFCKLGIIERAVEVFKNMESMGF 294 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~g~ 294 (565)
...++.|+.+.+..+++.+.+.|.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 334455666555555555544443
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.65 E-value=98 Score=26.99 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 332 NVITFNTLIFGFCKKGKLHEANRIFSEM 359 (565)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 359 (565)
+.......+..+.+.|+-++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 4444445555666666666666665444
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.08 E-value=44 Score=28.74 Aligned_cols=21 Identities=19% Similarity=0.067 Sum_probs=10.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC
Q 008454 518 LHHCGKDELAMKLFRKMEIRGLLPK 542 (565)
Q Consensus 518 ~~~~g~~~~A~~~~~~m~~~g~~p~ 542 (565)
.+..|+.+ +.+.+.+.|..++
T Consensus 190 A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 190 ASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHcCCHH----HHHHHHhcCCCCC
Confidence 34455544 3444445665544
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.99 E-value=77 Score=24.56 Aligned_cols=66 Identities=9% Similarity=0.136 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNED--FDRAAEVLLEMLEKCMAP 506 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~p 506 (565)
....++.-|...|+.++|.+.++++.... .-...+...+..++-+.++ .+....++..+...|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 35778888999999999999999885211 1123344555555555432 456677777777665543
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.13 E-value=1.4e+02 Score=25.97 Aligned_cols=89 Identities=12% Similarity=0.011 Sum_probs=40.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 409 LILGLCKEGKTKKAAYLVKDLDKN--SLVP----NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMST 482 (565)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 482 (565)
-++.+....++++|..++++..+. +..+ ........+..-.....-.-+..+.+++ .. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 466666777777777777765431 1111 0011111222222222222333333333 22 3344445555566
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 008454 483 FCQNEDFDRAAEVLLEML 500 (565)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~ 500 (565)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666666666666665443
No 286
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.23 E-value=1.5e+02 Score=27.15 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNME 290 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (565)
....++.-|...|+.++|...++++.
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 35678888999999999999999874
No 287
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.18 E-value=97 Score=24.69 Aligned_cols=60 Identities=10% Similarity=0.116 Sum_probs=35.3
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
.+.+.|+. ....-..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 17 ~l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34556655 3344445566666666666777777777666555566666666666666553
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.96 E-value=1.2e+02 Score=24.21 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 407 NALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
..++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345555555556666655555553
No 289
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.40 E-value=1.6e+02 Score=24.96 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008454 241 SERVDIALGFYKEMRRNRISPN-VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS 297 (565)
Q Consensus 241 ~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 297 (565)
.+...++.++|..|..+||.-. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3446677778888777666533 44556666667777888888888877777766663
No 290
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=42.04 E-value=3.1e+02 Score=28.25 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhh
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILD 168 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~ 168 (565)
...+|-.|.|.|..++|.++.++...
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~ 180 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKA 180 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGG
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhh
Confidence 45677788899999999999877654
No 291
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=41.70 E-value=2.1e+02 Score=26.25 Aligned_cols=19 Identities=16% Similarity=-0.094 Sum_probs=13.5
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 008454 413 LCKEGKTKKAAYLVKDLDK 431 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~ 431 (565)
+...|++++|...|+.+..
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIY 142 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 3567888888888877653
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.57 E-value=2.8e+02 Score=30.13 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcC
Q 008454 299 TTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV----ITFNTLIFGFCKKG 347 (565)
Q Consensus 299 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g 347 (565)
..|..++..+-+.+.++.+.++-+..++.--.-|. ..|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 46888999999999999999988888765322232 35677777776654
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.53 E-value=13 Score=33.02 Aligned_cols=56 Identities=11% Similarity=-0.074 Sum_probs=32.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHH-------HHHHHHHHHH--cCCChHHHHHHHHHHH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIE-------SCNKFLSSLL--DSERVDIALGFYKEMR 255 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~ll~~~~--~~~~~~~A~~~~~~m~ 255 (565)
+...++.|+.+....+++.+.+.|..++.. -++.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 344566788888877888776665544422 2233333332 5677776666666543
No 294
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.78 E-value=81 Score=27.17 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 008454 454 SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSI-ILSELYSGLHHCGKDELAMKLFR 532 (565)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~ 532 (565)
++.+...|.....- .-|......-+...-.+ +.+..+|..|..+|+--... .|......+...|++++|.++|+
T Consensus 100 LErc~~~F~~~~rY--knD~RyLklWl~Ya~~~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 100 LERCTREFVRNPLY--KDDVRYLRIWMQYVNYI---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp HHHHHHHTTTCGGG--TTCHHHHHHHHHHHTTC---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccc--cCCHHHHHHHHHHHHcc---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHHHCCCCC
Q 008454 533 KMEIRGLLP 541 (565)
Q Consensus 533 ~m~~~g~~p 541 (565)
.-++.+-+|
T Consensus 175 ~Gi~~~A~P 183 (223)
T 4aez_C 175 KGKRMKAKP 183 (223)
T ss_dssp HHHHHTCBS
T ss_pred HHHHcCCcc
No 295
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.18 E-value=1.5e+02 Score=23.84 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 008454 280 ERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ 330 (565)
Q Consensus 280 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 330 (565)
+....+++.+.+.|+--|...-...+....+.| -....+-.++...|+.
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 444556666666665533333334555444433 2344556666666664
No 296
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.16 E-value=86 Score=24.43 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=34.3
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSE-RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
+.+.|+..+. .-..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+.+.|-
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4555655433 3334555555555 566677777777776655666666666666666553
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.97 E-value=72 Score=25.63 Aligned_cols=70 Identities=9% Similarity=0.116 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNED--FDRAAEVLLEMLEKCMAPDSII 510 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~ 510 (565)
....++.-|...|+.++|.+.++++.... .-...+...+..++-+.++ .+.+..++..+...++-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 46778899999999999999999985211 1123445555556655433 4567777777777665544333
No 298
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=38.53 E-value=2.4e+02 Score=25.92 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 008454 280 ERAVEVFKNMESMGFIPS--VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGI 329 (565)
Q Consensus 280 ~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 329 (565)
....++-.-+-.-.+.|. .-+...-|....+.+++..|..+-+++.+.+.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 344444444444444433 22344566677778888888888888887653
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.26 E-value=1.4e+02 Score=23.10 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKN--SERAFQLYKSMIRSGCRP 471 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p 471 (565)
...++.-|...|+.++|...++++...... ...+...+..++-+.++ .+....++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 345566666667777777766666421111 12233333344433322 344556666666555433
No 300
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.99 E-value=1.7e+02 Score=24.27 Aligned_cols=79 Identities=10% Similarity=-0.080 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
++.+-...+..+.+.|+.+ +...+..+... ++...-...+.++...+..+ +...+..+.. .++...-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 3444444455555555432 22222222221 34444444444554444322 2222222222 234444444555
Q ss_pred HHHHcCC
Q 008454 272 AFCKLGI 278 (565)
Q Consensus 272 ~~~~~g~ 278 (565)
++.+.|+
T Consensus 104 aL~~~~~ 110 (211)
T 3ltm_A 104 ALGQIGD 110 (211)
T ss_dssp HHHHHCC
T ss_pred HHHHhCc
Confidence 5555554
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.54 E-value=85 Score=24.81 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=31.2
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
+.+.|+..+. .-..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 4455555332 223344555555555566666666665555555555555555555555
No 302
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=37.05 E-value=34 Score=30.35 Aligned_cols=48 Identities=6% Similarity=0.043 Sum_probs=23.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 008454 450 VRKNSERAFQLYKSMIRSGCRPNKHI--FEMLMSTFCQNEDFDRAAEVLL 497 (565)
Q Consensus 450 ~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~ 497 (565)
..++.....++.+.+.+.|..++... -...+...++.|+.+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34444444556666666665444211 1122334455677665544443
No 303
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.46 E-value=1.7e+02 Score=23.26 Aligned_cols=58 Identities=9% Similarity=0.087 Sum_probs=24.7
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 289 MESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 289 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3444544322 222334444444445555555555555444444444433444444433
No 304
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=35.21 E-value=69 Score=29.46 Aligned_cols=20 Identities=5% Similarity=-0.019 Sum_probs=12.2
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 008454 198 LLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~ 217 (565)
..+...++.|+.+-+..+++
T Consensus 27 t~L~~Av~~g~~~~V~~LL~ 46 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLE 46 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 44555567788766655554
No 305
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.88 E-value=98 Score=24.65 Aligned_cols=61 Identities=23% Similarity=0.262 Sum_probs=35.6
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSE-RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGII 279 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 279 (565)
.+.+.|+..+. .-..++..+...+ ..-.|.++++.+.+.+...+..|..-.+..+...|-+
T Consensus 7 ~l~~~g~r~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTL-PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34556665433 2334455555554 5566777777777666556666666666666666543
No 306
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.17 E-value=1.9e+02 Score=23.46 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=36.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 008454 484 CQNEDFDRAAEVLLEMLEKCMAP--DSIILSELYS-G-----LHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 536 (565)
...|++-+|.++|+.+-.....+ +...|..||+ . ..+.|+...|..++++...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34488888888888886554444 4556666666 2 2357888888888888765
No 307
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.13 E-value=3.6e+02 Score=26.72 Aligned_cols=65 Identities=14% Similarity=0.003 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC-CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 228 IESCNKFLSSLLDSERVDIALGFYKEMRRNRI-SPNV---YTLNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 228 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
...+|.+++.|...+.++.|..+.....--.. .+|. ..+..+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56678888888888888888888877631000 1111 12234455666778888888887776654
No 308
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.60 E-value=82 Score=24.94 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=28.3
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
+.+.|+.++.. -..++..+...+ .-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34445553322 233344444444 4456666666665555555555555555555554
No 309
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=32.16 E-value=92 Score=25.75 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=15.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 008454 304 LISGHCNKGLLSLAMKFKNLMEKNGIQPN 332 (565)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 332 (565)
.+...+..|+.+.-.++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 44444555555555555666666665443
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.47 E-value=3.3e+02 Score=29.55 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=35.3
Q ss_pred hhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008454 115 KVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGIL 167 (565)
Q Consensus 115 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~ 167 (565)
...+.++.|.++..|... ++-.-..+..++...|++++|...|+++.
T Consensus 821 ~~~~~~~~a~eL~~~~~~------t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 821 FLFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHTTCHHHHHHHGGGCCS------SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHhcHHHHHHHHHhhcCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 345678888887777654 33333568889999999999999998765
No 311
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.88 E-value=3.2e+02 Score=25.20 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHCCC
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSE-RVDIALGFYKEMRRNRI 259 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~ 259 (565)
...++.-|...|+.++|...++++..-... ...+...+..++-+.. ..+.+..++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 446888899999999999999888542211 1222333333332221 23456666776665554
No 312
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.56 E-value=3.8e+02 Score=25.92 Aligned_cols=89 Identities=17% Similarity=0.079 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCC------CCCcHHHHHHHHHhc-ccCCCChHHHHHHHHHHH---hc
Q 008454 137 SLTLETHSIVLHILTKNRKFKSSESILRGILDSDS------FDLPSKLFDSILYSY-RMCDSSPLVFDLLFKTYA---HR 206 (565)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~---~~ 206 (565)
..+.+....++.. ..|+..++..+++.+..... ..........++..- .....+...+..++.++. +.
T Consensus 191 ~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirg 268 (447)
T 3pvs_A 191 VLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRG 268 (447)
T ss_dssp ECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhC
Confidence 3566777776665 57888888888887765432 123334444444321 001111122223334332 34
Q ss_pred CChHHHHHHHHHHHHCCCCcC
Q 008454 207 KKFRNATDTFCQMRDYGFLPI 227 (565)
Q Consensus 207 g~~~~A~~~~~~~~~~~~~p~ 227 (565)
++.+.|+.++.+|.+.|..|.
T Consensus 269 sd~daAl~~la~ml~~Gedp~ 289 (447)
T 3pvs_A 269 SAPDAALYWYARIITAGGDPL 289 (447)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 577777777777777665544
No 313
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.83 E-value=3.9e+02 Score=25.83 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 008454 347 GKLHEANRIFSEMKATNVSPN 367 (565)
Q Consensus 347 g~~~~A~~~~~~m~~~~~~~~ 367 (565)
.+.+.|+.++.+|.+.|..|.
T Consensus 269 sd~daAl~~la~ml~~Gedp~ 289 (447)
T 3pvs_A 269 SAPDAALYWYARIITAGGDPL 289 (447)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 445555555555555544433
No 314
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.19 E-value=1.9e+02 Score=22.73 Aligned_cols=35 Identities=17% Similarity=-0.048 Sum_probs=14.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 310 NKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFC 344 (565)
Q Consensus 310 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 344 (565)
..+..-.|.++++.+.+.+...+..|...-++.+.
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 67 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFR 67 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHH
Confidence 33334444455555444433333333333333333
No 315
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.90 E-value=82 Score=24.71 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 232 NKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 232 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 44555555555566677777777666655666666555666655553
No 316
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=28.80 E-value=2.4e+02 Score=23.20 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=15.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC
Q 008454 342 GFCKKGKLHEANRIFSEMKATNV 364 (565)
Q Consensus 342 ~~~~~g~~~~A~~~~~~m~~~~~ 364 (565)
+|-+..++..|+..++.+....+
T Consensus 71 Cy~klKdYkkA~~~le~il~~kv 93 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKV 93 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45566778888877777775433
No 317
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.39 E-value=4.5e+02 Score=26.05 Aligned_cols=66 Identities=8% Similarity=0.053 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CcC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGF-LPI---IESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
...++|.+++.|...+.++.|..+..+..--.. .++ ...+-.+...+.-.+++.+|.+.+....+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 346799999999999999999999998852110 112 222334567777889999999999887654
No 318
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.20 E-value=1e+02 Score=24.90 Aligned_cols=69 Identities=13% Similarity=0.229 Sum_probs=42.6
Q ss_pred HHHHHHHHH-HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCH
Q 008454 210 RNATDTFCQ-MRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN--RISPNVYTLNMVMHAFCKLGII 279 (565)
Q Consensus 210 ~~A~~~~~~-~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~ 279 (565)
+.+++-+.+ +.+.|...+ ..-..++..+...++.-.|.++++.+.+. +...+..|..--+..+.+.|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T-~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYT-KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444443 345566643 34455667777777777788888888766 5556666666666666666643
No 319
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=27.75 E-value=2.9e+02 Score=23.65 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 008454 280 ERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP 331 (565)
Q Consensus 280 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 331 (565)
+.+..+++.+.+.|+--|...-...+....+.+.+ ....+-.++...|+..
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGE 143 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCH
Confidence 45556777777777764444444555555442222 3455666777777753
No 320
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=27.30 E-value=2.5e+02 Score=23.11 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=19.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC
Q 008454 202 TYAHRKKFRNATDTFCQMRDYGFL 225 (565)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~ 225 (565)
+|-+.+++..|+..++.+.+..+.
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 567789999999999999865544
No 321
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.53 E-value=1.1e+02 Score=25.13 Aligned_cols=24 Identities=8% Similarity=-0.165 Sum_probs=10.5
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 273 FCKLGIIERAVEVFKNMESMGFIP 296 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~p 296 (565)
.+..|+.+.-.++.+.+.+.|..+
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHHcCCcchHHHHHHHHHHCCCCC
Confidence 334444444444444444444443
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.38 E-value=1.8e+02 Score=22.49 Aligned_cols=58 Identities=10% Similarity=0.086 Sum_probs=25.7
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 289 MESMGFIPSVTTYNTLISGHCNKG-LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 289 m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 334455544332 22333344433 44555566666655544444444444444444433
No 323
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.93 E-value=1.6e+02 Score=20.14 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=29.5
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSE-RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555544322 33445554443 44455566666655554455555555555555554
No 324
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.76 E-value=19 Score=31.86 Aligned_cols=21 Identities=5% Similarity=-0.084 Sum_probs=8.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCC
Q 008454 274 CKLGIIERAVEVFKNMESMGF 294 (565)
Q Consensus 274 ~~~g~~~~a~~~~~~m~~~g~ 294 (565)
++.|+.+....+++.+.+.|.
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~ 33 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKK 33 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHHHHhcCC
Confidence 344444444444444444333
No 325
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.66 E-value=28 Score=29.96 Aligned_cols=20 Identities=5% Similarity=-0.183 Sum_probs=9.7
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 008454 516 SGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 516 ~~~~~~g~~~~A~~~~~~m~ 535 (565)
....+.|+.+-+..+++...
T Consensus 215 ~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHcCcHHHHHHHHHhhh
Confidence 33455566655555554433
No 326
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.60 E-value=1.2e+02 Score=25.68 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=13.0
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 008454 200 FKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~ 219 (565)
+...++.|+.+....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 45556677777777766653
No 327
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.35 E-value=58 Score=27.80 Aligned_cols=14 Identities=7% Similarity=0.233 Sum_probs=6.6
Q ss_pred HHhCCCchhHHHHH
Q 008454 150 LTKNRKFKSSESIL 163 (565)
Q Consensus 150 l~~~~~~~~a~~ll 163 (565)
.++.|+.+....++
T Consensus 16 A~~~g~~~~~~~Ll 29 (240)
T 3eu9_A 16 ATQYGIYERCRELV 29 (240)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCChHHHHHHH
Confidence 34555554444443
No 328
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.23 E-value=91 Score=20.77 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDS 241 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 241 (565)
++.++..+++..-.++++..++++.+.|.. +...|-.-++.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 445566666666677777777777777754 666666655655543
No 329
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.73 E-value=1.6e+02 Score=23.24 Aligned_cols=34 Identities=12% Similarity=-0.027 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 314 LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 314 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4455555555555444444444433344444333
No 330
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.51 E-value=2.8e+02 Score=22.41 Aligned_cols=52 Identities=8% Similarity=0.087 Sum_probs=28.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 008454 415 KEGKTKKAAYLVKDLDKNSLVP--NASTYSALIT-G-----QCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 415 ~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~-~-----~~~~~~~~~A~~~~~~m~~ 466 (565)
+.|++-+|-++++.+-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3366666666666665544334 3344555555 1 1235666666666666554
No 331
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.34 E-value=1.2e+02 Score=25.75 Aligned_cols=19 Identities=11% Similarity=-0.034 Sum_probs=10.3
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 008454 200 FKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~ 218 (565)
+...+..|+.+-+..+++.
T Consensus 41 L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 41 LHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3444556666655555554
No 332
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=23.73 E-value=1.6e+02 Score=29.43 Aligned_cols=74 Identities=14% Similarity=0.005 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCCCccC
Q 008454 486 NEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEKES 561 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 561 (565)
..+.....+...+++.+=.--+..-...++..|.+.|-.+.|.++++.|-.+-+. +...+ ..+.+|+++|+.+.
T Consensus 494 ~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 494 TGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp SSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred ccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhh
Confidence 3445556666666666533335556777888888889999999998888655443 44444 67778888887764
No 333
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.44 E-value=78 Score=28.33 Aligned_cols=175 Identities=11% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008454 248 LGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN 327 (565)
Q Consensus 248 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 327 (565)
.++++.+.+.|..++...-...+...+..|+.+-+..+++. ...+......-.+.+...+..|+.+-+..+++.
T Consensus 44 ~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---- 117 (285)
T 3kea_A 44 VRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS--GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK---- 117 (285)
T ss_dssp HHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc----
Q ss_pred CCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008454 328 GIQPNVITF---NTLIFGFCKKGKLHEANRIFSEMKATNVSPNVV-TYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDI 403 (565)
Q Consensus 328 g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 403 (565)
|..++.... ...+...+..|+.+ +++.+.+.|...... .-.+.+...+..|+.+-+..+++.-...... +.
T Consensus 118 ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~ 192 (285)
T 3kea_A 118 NWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NS 192 (285)
T ss_dssp CGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CC
T ss_pred CCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cC
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPN 437 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 437 (565)
.-.+..+...+..|+ .++.+.+.+.|..++
T Consensus 193 ~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 193 LLFIPDIKLAIDNKD----IEMLQALFKYDINIY 222 (285)
T ss_dssp CBCCTTHHHHHHHTC----HHHHHHHTTSCBCST
T ss_pred CCCChHHHHHHHcCC----HHHHHHHHHcCCCCC
No 334
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.42 E-value=5.4e+02 Score=26.41 Aligned_cols=22 Identities=0% Similarity=-0.005 Sum_probs=14.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRD 221 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~ 221 (565)
..-+...|++++|+.+|....+
T Consensus 450 A~~ae~~G~~~dAi~LY~La~~ 471 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAEE 471 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHhcC
Confidence 3345567777777777766543
No 335
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=23.21 E-value=7.2e+02 Score=26.70 Aligned_cols=160 Identities=9% Similarity=0.097 Sum_probs=87.4
Q ss_pred HHHHHHHHhcCCh---HHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 372 NTLINGYGQVGNS---EMGASLYEEMLRNG----IKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSAL 444 (565)
Q Consensus 372 ~~li~~~~~~g~~---~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 444 (565)
..++...|..|+. +.|.+.|+.....+ +.||.. ..+...-.+.|..++-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 3466677777764 46777887776542 344432 22333334567766666677766664 244455678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHh
Q 008454 445 ITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNE-DFDRAAEVLLEMLE---KCMAPDSIILSELYSGLHH 520 (565)
Q Consensus 445 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~p~~~~~~~li~~~~~ 520 (565)
+.+++...+.+...++++..+............ ++.+...+. ..+.|.+.+.+=.+ .........+..++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 888888888888888887776533222222222 233333322 23444444433211 1122233456677777766
Q ss_pred cCCHHHHHHHHHHHHHC
Q 008454 521 CGKDELAMKLFRKMEIR 537 (565)
Q Consensus 521 ~g~~~~A~~~~~~m~~~ 537 (565)
.-..++-.+-++.+.+.
T Consensus 844 ~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 844 RFSSEFELQQLEQFKKN 860 (909)
T ss_dssp TCCSHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHhh
Confidence 55555555556665544
No 336
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=23.01 E-value=3.1e+02 Score=22.38 Aligned_cols=192 Identities=7% Similarity=-0.043 Sum_probs=0.0
Q ss_pred CCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHH
Q 008454 171 SFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGF 250 (565)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~ 250 (565)
........+..++... ..+++.+-...+..+.+.|+....-.+.+.+.. ++...-...+.++...+..+..-.+
T Consensus 8 ~~~~~~~~~~~~i~~L--~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~~~~~~~L 81 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNL--QDDSYYVRRAAAYALGKIGDERAVEPLIKALKD----EDAWVRRAAADALGQIGDERAVEPL 81 (201)
T ss_dssp CCCCCHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCCGGGHHHH
T ss_pred ccccCCcchHHHHHHh--cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 008454 251 YKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ 330 (565)
Q Consensus 251 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 330 (565)
.+.+. .++...-...+.++.+.|+.+....+.+.+.. ++...-...+.++.+.+..+....+...+.+.
T Consensus 82 ~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~--- 150 (201)
T 3ltj_A 82 IKALK----DEDGWVRQSAAVALGQIGDERAVEPLIKALKD----EDWFVRIAAAFALGEIGDERAVEPLIKALKDE--- 150 (201)
T ss_dssp HHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCS---
T ss_pred HHHHc----CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC---
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008454 331 PNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNS 384 (565)
Q Consensus 331 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 384 (565)
+..+-...+.++.+.|. +++...+..+.+ .++...-...+.++.+.+..
T Consensus 151 -~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 151 -DGWVRQSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp -SHHHHHHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHHCC--
T ss_pred -CHHHHHHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHHHHhh
No 337
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.52 E-value=1.9e+02 Score=22.85 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=25.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 289 MESMGFIPSVTTYNTLISGHCNKG-LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 289 m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 4444555443322 2333333333 44455555555555544444444444444444443
No 338
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.25 E-value=1.8e+02 Score=23.41 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=31.9
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCC
Q 008454 360 KATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN--GIKVDILTYNALILGLCKEGK 418 (565)
Q Consensus 360 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~ 418 (565)
.+.|+..+. --..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 334555433 2334455555555566666666666665 555555555555555655553
No 339
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.00 E-value=2e+02 Score=19.69 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 315 SLAMKFKNLMEKNGIQPNVITFNTLIFGFC 344 (565)
Q Consensus 315 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 344 (565)
-.+.++++.+.+.+...+..|....++.+.
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~ 63 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFD 63 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 334444444444333333333333333333
No 340
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.84 E-value=3.1e+02 Score=21.91 Aligned_cols=50 Identities=12% Similarity=0.015 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 247 ALGFYKEMRRNRISPN-VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIP 296 (565)
Q Consensus 247 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 296 (565)
+.++|..|..+||--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6677777766665433 3445555566666777777777777766665555
No 341
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.77 E-value=87 Score=29.14 Aligned_cols=217 Identities=11% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 267 NMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKK 346 (565)
Q Consensus 267 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 346 (565)
...+...+..|+.+.+..+++. ...+......-.+.+...+..|+. ++++.+.+.|..++...-...+...+..
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCV----DTAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCH----HHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCccccCCCCHHHHHHHc
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH--------------------HHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHH
Q 008454 347 GKLHEANRIFSEMKATNVSPNV--------------------VTYNTLINGYGQVG--NSEMGASLYEEMLRNGIKVDIL 404 (565)
Q Consensus 347 g~~~~A~~~~~~m~~~~~~~~~--------------------~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~ 404 (565)
|+.+-+..+++.....|..++. .-.+.|..+ +..| +.+-+..+++. ...+.....
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A-~~~g~~~~~~v~~Ll~~--ga~~~~~d~ 171 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWC-VGLGPEYLEMIKILVQL--GASPTAKDK 171 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHH-HHSCGGGHHHHHHHHHH--TCCTTCCCT
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHH-HHcCCchHHHHHHHHHc--CCCCcccCC
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDK-----NSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFE-- 477 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-- 477 (565)
.-...+...+..|+.+-+..+++.-.. .+.. +..-.+.|..+..... .++.+.+++.|..++.....
T Consensus 172 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~~g~t~L~~A~~~g~-----~~~v~~Ll~~gad~~~~d~~g~ 245 (364)
T 3ljn_A 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA-NKQGNSHLHWAILINW-----EDVAMRFVEMGIDVNMEDNEHT 245 (364)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCC-CTTCCCTTHHHHTTTC-----HHHHHHHHTTTCCTTCCCTTSC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhccccccccccccc-CCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCC
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 008454 478 MLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~ 498 (565)
.-+...+..|+.+-+..+++.
T Consensus 246 tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 246 VPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHhChHHHHHHHHHc
No 342
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.67 E-value=64 Score=26.72 Aligned_cols=12 Identities=8% Similarity=0.136 Sum_probs=4.9
Q ss_pred HcCCHHHHHHHH
Q 008454 275 KLGIIERAVEVF 286 (565)
Q Consensus 275 ~~g~~~~a~~~~ 286 (565)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444443333
No 343
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.35 E-value=57 Score=27.04 Aligned_cols=15 Identities=7% Similarity=0.209 Sum_probs=7.7
Q ss_pred HHhcCChHHHHHHHH
Q 008454 203 YAHRKKFRNATDTFC 217 (565)
Q Consensus 203 ~~~~g~~~~A~~~~~ 217 (565)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 344556555555443
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.28 E-value=1.3e+02 Score=23.20 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 244 VDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274 (565)
Q Consensus 244 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 274 (565)
.-.|.++++.+.+.+...+..|..-.+..+.
T Consensus 26 ~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~ 56 (131)
T 2o03_A 26 FRSAQELHDELRRRGENIGLTTVYRTLQSMA 56 (131)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 3344444444444333333333333333333
No 345
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.00 E-value=7.9e+02 Score=26.36 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=41.6
Q ss_pred HHHHHHcCCC---hHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 234 FLSSLLDSER---VDIALGFYKEMRRNR----ISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLIS 306 (565)
Q Consensus 234 ll~~~~~~~~---~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 306 (565)
++...|..|. .+.|.+.|+.....+ ++||... .+...-.+.|..++-..+++..... .+..--..++.
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~ 766 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHH
Confidence 4455555554 334556666554321 3344321 2222223445555555555555543 13333444555
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 008454 307 GHCNKGLLSLAMKFKNLMEK 326 (565)
Q Consensus 307 ~~~~~g~~~~a~~~~~~m~~ 326 (565)
+++...+.....++++....
T Consensus 767 aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTC
T ss_pred HhCCCCCHHHHHHHHHHHhC
Confidence 55555565555555555443
Done!