BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008455
(565 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449436026|ref|XP_004135795.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like [Cucumis
sativus]
Length = 643
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 343/602 (56%), Positives = 421/602 (69%), Gaps = 68/602 (11%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWCS+C ++V G R L CD CGKVL+ +NFS E TF K++ GQSQLSGNFVR+IQ
Sbjct: 1 MVWCSNCVKNVAGSRDEAGFLYCDMCGKVLDSYNFSQEPTFTKDSGGQSQLSGNFVRSIQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
S Y ASRER + KAF+DMR M+N LN+GESDEI+ VA FY IA+ RNFT+GR E VQA
Sbjct: 61 SNYSASRERTLNKAFEDMRYMRNGLNMGESDEIIRVAGAFYRIALERNFTRGRNAEFVQA 120
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLY+ACR+K+KP+LLIDFSNYL INVY LGAV+LQLC+VL + + V K VDPS+F+
Sbjct: 121 ACLYIACREKNKPYLLIDFSNYLRINVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFID 180
Query: 181 KFTDRLLPGGN-----KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
KFT LL G K+V TA I+ SMKRDW+ TGRKPSGLCGAALY+SAL++G+K
Sbjct: 181 KFTQCLLGGTKDDGMKKEVSKTALKIITSMKRDWMQTGRKPSGLCGAALYISALSNGVKC 240
Query: 236 SKSDIVKIVHICEATLMKRLIEFENTDSGSLT---------------------------- 267
+KSDI+KIVHIC+ATL KRLIEFENT+SGSLT
Sbjct: 241 TKSDIIKIVHICDATLTKRLIEFENTESGSLTNTCLLILVQALQHIDLLEYLPSGHADIS 300
Query: 268 ----IEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDT-GKPFACGLCRSCYEEF 322
+E+F+ +L +N N + +EVLC HK+ KP+A GLCRSCY++F
Sbjct: 301 EKMNMEEFIVMADKLK---GSNSYTNNGSSALSDEVLCVHKNECQKPYALGLCRSCYDDF 357
Query: 323 MTISEGLEGGADPPAFQVAERERMVKASAEENS-----------------SFERESDSPF 365
+ +S GL+GG++PPAFQ AE+ERM KA+ EE S + E+ESD+
Sbjct: 358 VELSGGLDGGSNPPAFQSAEKERMEKATVEEGSDDCSAIGKFSQGLKPCNNTEKESDNVH 417
Query: 366 MSRVDKVQSPEPERVPKNCTTQTASNEGEG---DHTKTPGVDATTEASDGSDNFSDIDDF 422
+ + E E + ++E G D K D T ASD S+N+SDIDD
Sbjct: 418 VDASETASFKEAE-------AKGTADEQRGPDDDVNKVGADDLGTCASDDSENWSDIDDV 470
Query: 423 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 482
EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK+AAAAAAK A EA+++NC E L+AA++
Sbjct: 471 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKDAAAAAAKKAYEANFQNCSEDLKAAKD 530
Query: 483 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 542
LA AAAAAVAKSRKE+Q+KRAAEAKN+ PAQTA EATR+ML KKRLSSKINYDVL+KLFD
Sbjct: 531 LAEAAAAAVAKSRKERQRKRAAEAKNATPAQTAAEATRQMLNKKRLSSKINYDVLDKLFD 590
Query: 543 DS 544
+S
Sbjct: 591 ES 592
>gi|449485890|ref|XP_004157302.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like [Cucumis
sativus]
Length = 663
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 344/602 (57%), Positives = 422/602 (70%), Gaps = 68/602 (11%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWCS+C ++V G R L CD CGKVL+ +NFS E TF K++ GQSQLSGNFVR+IQ
Sbjct: 1 MVWCSNCVKNVAGSRDEAGFLYCDMCGKVLDSYNFSQEPTFTKDSGGQSQLSGNFVRSIQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
S Y ASRER + KAF+DMR M+N LN+GESDEI+ VA FY IA+ RNFT+GR E VQA
Sbjct: 61 SNYSASRERTLNKAFEDMRYMRNGLNMGESDEIIRVAGAFYRIALERNFTRGRNAEFVQA 120
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLY+ACR+K+KP+LLIDFSNYL INVY LGAV+LQLC+VL + + V K VDPS+F+
Sbjct: 121 ACLYIACREKNKPYLLIDFSNYLRINVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFID 180
Query: 181 KFTDRLLPGGN-----KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
KFT LL G K+V TA I+ SMKRDW+ TGRKPSGLCGAALY+SAL++G+K
Sbjct: 181 KFTQCLLGGTKDDGMKKEVSKTALKIITSMKRDWMQTGRKPSGLCGAALYISALSNGVKC 240
Query: 236 SKSDIVKIVHICEATLMKRLIEFENTDSGSLT---------------------------- 267
+KSDI+KIVHIC+ATL KRLIEFENT+SGSLT
Sbjct: 241 TKSDIIKIVHICDATLTKRLIEFENTESGSLTNTCLLILVQALQHIDLLEYLPSGHADIS 300
Query: 268 ----IEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDT-GKPFACGLCRSCYEEF 322
+E+F+ +L + + NNG +EVLC HK+ KP+A GLCRSCY++F
Sbjct: 301 EKMNMEEFIVMADKLKG--SNSYTNNGSNALS-DEVLCVHKNECQKPYALGLCRSCYDDF 357
Query: 323 MTISEGLEGGADPPAFQVAERERMVKASAEENS-----------------SFERESDSPF 365
+ +S GL+GG++PPAFQ AE+ERM KA+ EE S + E+ESD+
Sbjct: 358 VELSGGLDGGSNPPAFQSAEKERMEKATVEEGSDDCSAIGKFSQGLKPCNNTEKESDNVH 417
Query: 366 MSRVDKVQSPEPERVPKNCTTQTASNEGEG---DHTKTPGVDATTEASDGSDNFSDIDDF 422
+ + E E + ++E G D K D T ASD S+N+SDIDD
Sbjct: 418 VDASETASFKEAE-------AKGTADEQRGPDDDVNKVGADDLGTCASDDSENWSDIDDV 470
Query: 423 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 482
EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK+AAAAAAK A EA+++NC E L+AA++
Sbjct: 471 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKDAAAAAAKKAYEANFQNCSEDLKAAKD 530
Query: 483 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 542
LA AAAAAVAKSRKE+Q+KRAAEAKN+ PAQTA EATR+ML KKRLSSKINYDVL+KLFD
Sbjct: 531 LAEAAAAAVAKSRKERQRKRAAEAKNATPAQTAAEATRQMLNKKRLSSKINYDVLDKLFD 590
Query: 543 DS 544
+S
Sbjct: 591 ES 592
>gi|296085890|emb|CBI31214.3| unnamed protein product [Vitis vinifera]
Length = 622
Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust.
Identities = 336/553 (60%), Positives = 414/553 (74%), Gaps = 11/553 (1%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC++CAR R + LCC CGKV++ NFS + FVKNAAGQSQ+SGNFV+T+Q
Sbjct: 1 MVWCTNCARDCRTERLLNGYLCCTACGKVVDQDNFSNDPVFVKNAAGQSQMSGNFVKTVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
S+Y ASRER + A+ ++ + NA+ + D I+ A FY IA+ RNFT+GRR EQV A
Sbjct: 61 SDYSASRERTLNDAYAEIGHIANAIGVSGGDSIIRPALAFYTIALERNFTRGRRKEQVAA 120
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLY+ACR+ KPFLLIDFS +L INVY LGAV+LQLC++L + + V K VDPS+F+H
Sbjct: 121 ACLYIACRENKKPFLLIDFSEHLRINVYVLGAVFLQLCKLLSLEEHPIVQKPVDPSLFIH 180
Query: 181 KFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+F L N V TA I+ASMKRDW+ TGRKPSGLCGAALY+SAL++GLK SK+DI
Sbjct: 181 RFAAGLPGETNMGVSKTALRIIASMKRDWLQTGRKPSGLCGAALYISALSYGLKCSKTDI 240
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNN-GPKVSGMNEV 299
VKIVHICEATL KRLIEFENT+SGSLTIE+F + +EL + ++ +N G V G E+
Sbjct: 241 VKIVHICEATLTKRLIEFENTESGSLTIEEFNMKAEELEKEYSSTKQSNIGSTVPGKGEL 300
Query: 300 LCKHKDTGK-PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENS--- 355
LC+HK +GK PFA GLC CY EF+ +S GLEGG++PPAFQ AER+RM KA+AEEN+
Sbjct: 301 LCEHKGSGKPPFAHGLCEICYGEFIKLSGGLEGGSEPPAFQRAERDRMAKAAAEENADSN 360
Query: 356 --SFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGV-DATTEASDG 412
++ S SP + + + EP+ + + + AS + EG + G D A D
Sbjct: 361 QIQLDKGSSSPDVCGNESSKLAEPKSI--GASDKQASID-EGAPSDLHGADDENANAGDE 417
Query: 413 SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 472
S++ SDIDD EVDGYLHNE+EK +KKIIWE MN+EYLEEQAAKEAAAAAAK A EAS+K+
Sbjct: 418 SESLSDIDDVEVDGYLHNEKEKQFKKIIWEAMNKEYLEEQAAKEAAAAAAKEAYEASFKD 477
Query: 473 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKI 532
PEGL+AAQELAAA AAAVAKSRKE+QQKRAAEAKN+ PAQTA EATR+MLTKKRLSSKI
Sbjct: 478 NPEGLKAAQELAAATAAAVAKSRKERQQKRAAEAKNTVPAQTAAEATRQMLTKKRLSSKI 537
Query: 533 NYDVLEKLFDDSV 545
NYDVLEKLFDDSV
Sbjct: 538 NYDVLEKLFDDSV 550
>gi|255569418|ref|XP_002525676.1| transcription initiation factor brf1, putative [Ricinus communis]
gi|223534976|gb|EEF36659.1| transcription initiation factor brf1, putative [Ricinus communis]
Length = 625
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 324/556 (58%), Positives = 410/556 (73%), Gaps = 22/556 (3%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MV+C SCAR V G+R D L C +CG+VL+ N+STEATFVKNA+GQSQ++G VR+I+
Sbjct: 1 MVFCKSCARDVPGYRDSDGILSCGKCGRVLKFDNYSTEATFVKNASGQSQMAGRIVRSIE 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
+SR+RL +KA+DDM +KN L++GE+ IV A +Y IAV RNFTKGRRTEQVQA
Sbjct: 61 GG-NSSRQRLYDKAYDDMIYIKNGLDMGENLAIVDQAMMYYRIAVERNFTKGRRTEQVQA 119
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLY+ACR+ KP+LLIDFSN+L IN+Y LGAV+LQLC+VL + + S K +DPSIF+H
Sbjct: 120 ACLYIACRENRKPYLLIDFSNFLRINIYVLGAVFLQLCKVLNLTEHSICQKLLDPSIFIH 179
Query: 181 KFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
K+T L G NK + D+A I+ASM RDW+ TGR+PSGL GAALY++AL+HGL S+ DI
Sbjct: 180 KYTASLSGGKNKDISDSALTIIASMNRDWMQTGRRPSGLWGAALYIAALSHGLTCSRKDI 239
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVL 300
+K+VH+C+ATL KRL+EFENT+SGSLTIE+ A+ +EL E + + N K S E+L
Sbjct: 240 LKLVHVCDATLSKRLVEFENTESGSLTIEEINAKAEELRES-STDQSNFVLKGSSSKELL 298
Query: 301 CKHKDTGK-PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSS--- 356
C+HK T + P+A GLC+ CYE F+ G +GG+DPPAFQ AER R SA N++
Sbjct: 299 CQHKGTSRIPYAYGLCKGCYEYFI----GFDGGSDPPAFQQAERRRKENLSAMNNNNDSN 354
Query: 357 --------FERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKT-PGVDATT 407
FE+E +S R +++ S + E + A +G ++K D ++
Sbjct: 355 SVSTMPFLFEKELNSQHADRDEQLLSKKAESTGEAALHLPAD---DGGYSKLHDDDDMSS 411
Query: 408 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 467
+A D SDNFSDIDD EVDGYLHNEEE +KKIIWEEMNREYLEEQAAKEA AAAAK A E
Sbjct: 412 KALDESDNFSDIDDAEVDGYLHNEEEAQFKKIIWEEMNREYLEEQAAKEAVAAAAKEAWE 471
Query: 468 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 527
A +K+CPE +QAA+EL AA AAA+AKS+KEKQQKRAAEAKNS PAQ+A EA R+MLTKKR
Sbjct: 472 AKFKDCPEEMQAARELEAAVAAALAKSKKEKQQKRAAEAKNSVPAQSASEAARQMLTKKR 531
Query: 528 LSSKINYDVLEKLFDD 543
LSSKINYDVLEKLFD+
Sbjct: 532 LSSKINYDVLEKLFDE 547
>gi|297829466|ref|XP_002882615.1| RNA polymerase II transcription factor [Arabidopsis lyrata subsp.
lyrata]
gi|297328455|gb|EFH58874.1| RNA polymerase II transcription factor [Arabidopsis lyrata subsp.
lyrata]
Length = 600
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 314/555 (56%), Positives = 386/555 (69%), Gaps = 40/555 (7%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC+ C ++V G RPYD L C+ CG++LE+ NFSTE TFVKNAAGQSQ SGN V ++Q
Sbjct: 1 MVWCNHCVKNVPGIRPYDGALACNLCGRILENFNFSTEVTFVKNAAGQSQASGNIVSSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER A D+ +++AL IG E +++ +A F+ AV +NFTKGRRTE VQ
Sbjct: 61 SGIPSSRERRYRIARDEFTNLRDALGIGDERADVIDMAVLFFKSAVEQNFTKGRRTELVQ 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
ASCLYL CR+ + PFLLIDFS+YL ++VYELG+VYLQLC++LYIAD N K VDPSIF+
Sbjct: 121 ASCLYLTCRELNVPFLLIDFSSYLRVSVYELGSVYLQLCEMLYIADNQNYEKLVDPSIFI 180
Query: 180 HKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+F++ LL G NK V TA I+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SKS
Sbjct: 181 DRFSNILLKGTHNKAVVKTAIAIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKS 240
Query: 239 DIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNE 298
DIV IVHICEATL KRLIEF NT+SG+L +++ R E H+ + P S
Sbjct: 241 DIVNIVHICEATLTKRLIEFGNTESGNLNVDEITER--ESHKRSSTMKP-----TSNKEA 293
Query: 299 VLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEEN---- 354
VLC H+D+ KPF GLC+ CYE+F+ +S GL GG+DPPAFQ AE ERM KA+ EEN
Sbjct: 294 VLCMHQDS-KPFGYGLCKDCYEDFINVSGGLVGGSDPPAFQRAENERMEKAAREENEGGI 352
Query: 355 SSFERE----SDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEAS 410
SS + SD MS+ +K+ S + ER + +G+ +H T S
Sbjct: 353 SSLNHDEQLYSDYCSMSKSEKLFSEKGER----------NKDGDEEHADT---------S 393
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
D SDNFSDI D EVDGY++NEEE HYK I W EMN++YLEEQAAKEAA AA AL+AS
Sbjct: 394 DESDNFSDISDDEVDGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASN 453
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 530
NCPE A++ AA A AKSRKEKQQK+A EAKN+ P TA+EA RR L KKRLS
Sbjct: 454 SNCPED---ARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAMEAVRRTLEKKRLSL 510
Query: 531 KINYDVLEKLFDDSV 545
INYDVLE+LFD S
Sbjct: 511 VINYDVLEELFDTST 525
>gi|6478939|gb|AAF14044.1|AC011436_28 putative transcription factor [Arabidopsis thaliana]
Length = 600
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 304/546 (55%), Positives = 384/546 (70%), Gaps = 28/546 (5%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC+ C ++V G RPYD L C+ CG++LE+ +FSTE TFVKNAAGQSQ SGN VR++Q
Sbjct: 1 MVWCNHCVKNVPGIRPYDGALACNLCGRILENFHFSTEVTFVKNAAGQSQASGNIVRSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER A D++ +K+AL IG E D+++ +A +F+ +AV +NFTKGRRTE VQ
Sbjct: 61 SGITSSRERRFRIARDELMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFTKGRRTELVQ 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
ASCLYL CR+ + LLIDFS+YL ++VYELG+VYLQLC++LY+ + N K VDPSIF+
Sbjct: 121 ASCLYLTCRELNIALLLIDFSSYLRVSVYELGSVYLQLCEMLYLVENRNYEKLVDPSIFM 180
Query: 180 HKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+F++ LL G NK V TARDI+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SK+
Sbjct: 181 DRFSNSLLKGKNNKDVVATARDIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKT 240
Query: 239 DIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNE 298
DIV IVHICEATL KRLIEF +TDSG+L + + R++E H+ P S
Sbjct: 241 DIVNIVHICEATLTKRLIEFGDTDSGNLNVNEL--RERESHKRSFTMKP-----TSNKEA 293
Query: 299 VLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFE 358
VLC H+D+ KPF GLC CY++F+ +S GL GG++PPAFQ AE+ERM KA+ EEN
Sbjct: 294 VLCMHQDS-KPFGYGLCEDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREENEG-- 350
Query: 359 RESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSD 418
+S ++ + R+ C + +GE D G + + SD SDNFSD
Sbjct: 351 ------GISSLNHDEQLYHLRIYLGCVAE----KGEKDK---DGAEEHADTSDESDNFSD 397
Query: 419 IDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQ 478
I D EV+GY++NEEE HYK I W EMN++YLEEQAAKEAA AA AL+AS NCPE
Sbjct: 398 ISDDEVNGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPED-- 455
Query: 479 AAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLE 538
A++ AA A AKSRKEKQQK+A EAKN+ P TA+EA RR L KKRLSS INYDVLE
Sbjct: 456 -ARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLE 514
Query: 539 KLFDDS 544
LFD S
Sbjct: 515 SLFDTS 520
>gi|145338292|ref|NP_187547.2| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
gi|110741698|dbj|BAE98795.1| putative transcription factor [Arabidopsis thaliana]
gi|332641235|gb|AEE74756.1| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
Length = 604
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 303/546 (55%), Positives = 384/546 (70%), Gaps = 24/546 (4%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC+ C ++V G RPYD L C+ CG++LE+ +FSTE TFVKNAAGQSQ SGN VR++Q
Sbjct: 1 MVWCNHCVKNVPGIRPYDGALACNLCGRILENFHFSTEVTFVKNAAGQSQASGNIVRSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER A D++ +K+AL IG E D+++ +A +F+ +AV +NFTKGRRTE VQ
Sbjct: 61 SGITSSRERRFRIARDELMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFTKGRRTELVQ 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
ASCLYL CR+ + LLIDFS+YL ++VYELG+VYLQLC++LY+ + N K VDPSIF+
Sbjct: 121 ASCLYLTCRELNIALLLIDFSSYLRVSVYELGSVYLQLCEMLYLVENRNYEKLVDPSIFM 180
Query: 180 HKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+F++ LL G NK V TARDI+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SK+
Sbjct: 181 DRFSNSLLKGKNNKDVVATARDIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKT 240
Query: 239 DIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNE 298
DIV IVHICEATL KRLIEF +TDSG+L + + R++E H+ P S
Sbjct: 241 DIVNIVHICEATLTKRLIEFGDTDSGNLNVNEL--RERESHKRSFTMKP-----TSNKEA 293
Query: 299 VLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFE 358
VLC H+D+ KPF GLC CY++F+ +S GL GG++PPAFQ AE+ERM KA+ EEN
Sbjct: 294 VLCMHQDS-KPFGYGLCEDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREENEG-- 350
Query: 359 RESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSD 418
+S ++ + + + + S +GE D G + + SD SDNFSD
Sbjct: 351 ------GISSLNHDEQLYSDYCSMSKRGKQCSEKGEKDK---DGAEEHADTSDESDNFSD 401
Query: 419 IDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQ 478
I D EV+GY++NEEE HYK I W EMN++YLEEQAAKEAA AA AL+AS NCPE
Sbjct: 402 ISDDEVNGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPED-- 459
Query: 479 AAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLE 538
A++ AA A AKSRKEKQQK+A EAKN+ P TA+EA RR L KKRLSS INYDVLE
Sbjct: 460 -ARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLE 518
Query: 539 KLFDDS 544
LFD S
Sbjct: 519 SLFDTS 524
>gi|297829468|ref|XP_002882616.1| hypothetical protein ARALYDRAFT_317739 [Arabidopsis lyrata subsp.
lyrata]
gi|297328456|gb|EFH58875.1| hypothetical protein ARALYDRAFT_317739 [Arabidopsis lyrata subsp.
lyrata]
Length = 1245
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/576 (53%), Positives = 383/576 (66%), Gaps = 54/576 (9%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC+ C ++V G RPYD L C+ CG++LE+ NFSTE TFVKNAAGQSQ SGN V ++Q
Sbjct: 1 MVWCNHCVKNVPGIRPYDGALACNLCGRILENFNFSTEVTFVKNAAGQSQASGNIVSSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER A D+ +++AL IG E +++ +A F+ AV +NFTKGRRTE VQ
Sbjct: 61 SGIPSSRERRYRIARDEFTNLRDALGIGDERADVIDMAVLFFKSAVEQNFTKGRRTELVQ 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
ASCLYL CR+ + PFLLIDFS+YL ++VYELG+VYLQLC++LYIAD N K VDPSIF+
Sbjct: 121 ASCLYLTCRELNVPFLLIDFSSYLRVSVYELGSVYLQLCEMLYIADNQNYEKLVDPSIFI 180
Query: 180 HKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+F++ LL G NK V TA I+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SKS
Sbjct: 181 DRFSNILLKGTHNKAVVKTAIAIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKS 240
Query: 239 DIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNE 298
DIV IVHICEATL KRLIEF NT+SG+L +++ R E H+ + P S
Sbjct: 241 DIVNIVHICEATLTKRLIEFGNTESGNLNVDEITER--ESHKRSSTMKP-----TSNKEA 293
Query: 299 VLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSS-- 356
VLC H+D+ KPF GLC+ CYE+F+ +S GL GG+DPPAFQ AE ERM KA+ EEN
Sbjct: 294 VLCMHQDS-KPFGYGLCKDCYEDFINVSGGLVGGSDPPAFQRAENERMEKAAREENEGGI 352
Query: 357 ----------------------------FERESDSPFMSRVDKVQSPEPERVPKNCTTQT 388
+E++ + F S + S E R+ C +
Sbjct: 353 SSLNHDEQLYDLILKISCAELLTVRLLQYEQKRKTIFCSSL----SFERLRIYLCCVAEK 408
Query: 389 ASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 448
+GD + + SD SDNFSDI D EVDGY++NEEE HYK I W EMN++Y
Sbjct: 409 GERNKDGD-------EEHADTSDESDNFSDISDDEVDGYINNEEETHYKTITWTEMNKDY 461
Query: 449 LEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKN 508
LEEQAAKEAA AA AL+AS NCPE A++ AA A AKSRKEKQQK+A EAKN
Sbjct: 462 LEEQAAKEAALKAASEALKASNSNCPED---ARKAFEAAKADAAKSRKEKQQKKAEEAKN 518
Query: 509 SGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 544
+ P TA+EA RR L KKRLS INYDVLE+LFD S
Sbjct: 519 AAPPATAMEAVRRTLEKKRLSLVINYDVLEELFDTS 554
>gi|224106357|ref|XP_002314140.1| predicted protein [Populus trichocarpa]
gi|222850548|gb|EEE88095.1| predicted protein [Populus trichocarpa]
Length = 541
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 297/527 (56%), Positives = 367/527 (69%), Gaps = 44/527 (8%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C RCGKVLE S+EA+FV+ +G+S ++G+FVR+++SE ASRERL E+A DDM +K
Sbjct: 2 CSRCGKVLEFSYLSSEASFVQTRSGESHVAGSFVRSVESE-NASRERLYERARDDMLNIK 60
Query: 83 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
N L +GE+ IV+ A +Y IAV RNFT+GRRT+QVQA+CLY+ACR+ KP+LLIDFS Y
Sbjct: 61 NGLGMGENLGIVNQAMVYYRIAVERNFTRGRRTDQVQAACLYIACRENRKPYLLIDFSIY 120
Query: 143 LNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDIL 202
L IN+Y LGAV+LQLC+VL + + + K DPSIF+HK+T L G NK++ D A I+
Sbjct: 121 LQINIYVLGAVFLQLCKVLNLTEHAICQKLHDPSIFIHKYTASLSGGKNKEISDDALTII 180
Query: 203 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 262
ASM WI TGR PS L GAALY+SAL+HGL SKSDI+++VH+C TL KRL+EFENT+
Sbjct: 181 ASMNYHWIQTGRTPSALWGAALYISALSHGLNCSKSDILRLVHVCGKTLSKRLVEFENTE 240
Query: 263 SGSLTIEDFMARKKELHEGVAANLP-NNGPKVSGMNEVLCKHKDTGKP-FACGLCRSCYE 320
SGSLT+E EL E ++LP N + S E+LC+HK T +P F GLC+ CY
Sbjct: 241 SGSLTVE-------ELKE---SSLPRRNFGEPSSSKELLCQHKGTNRPSFGFGLCKDCY- 289
Query: 321 EFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERV 380
I G +GG DPPAFQ AE +RM K+S N SDS +
Sbjct: 290 ---AIVIGFDGGTDPPAFQNAESQRMKKSSIRHNV-----SDSNLV-------------- 327
Query: 381 PKNCTTQTASNEGEGDHTKTPGV-DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKI 439
TA+ D K GV D +++A D SD FSDIDD EVD YLHNEEEK YKKI
Sbjct: 328 -------TATGHLANDFDKLHGVGDMSSKAFDESDGFSDIDDAEVDSYLHNEEEKRYKKI 380
Query: 440 IWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ 499
IWEEMNREYL+EQAAKEAAAA K A E ++KNCPE LQAA++L AA A +AKS+KE Q
Sbjct: 381 IWEEMNREYLQEQAAKEAAAATLKKAWEENFKNCPEDLQAAKKLDAAVKADLAKSKKETQ 440
Query: 500 QKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSVC 546
QKRA+EA+N PA++A EA RMLTKKRL SKINYDVLEKLF+DSVC
Sbjct: 441 QKRASEARNLAPAKSAAEAVHRMLTKKRLGSKINYDVLEKLFEDSVC 487
>gi|359481012|ref|XP_002269372.2| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Vitis
vinifera]
Length = 529
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 292/504 (57%), Positives = 367/504 (72%), Gaps = 11/504 (2%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC++CAR R + LCC CGKV++ NFS + FVKNAAGQSQ+SGNFV+T+Q
Sbjct: 1 MVWCTNCARDCRTERLLNGYLCCTACGKVVDQDNFSNDPVFVKNAAGQSQMSGNFVKTVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
S+Y ASRER + A+ ++ + NA+ + D I+ A FY IA+ RNFT+GRR EQV A
Sbjct: 61 SDYSASRERTLNDAYAEIGHIANAIGVSGGDSIIRPALAFYTIALERNFTRGRRKEQVAA 120
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLY+ACR+ KPFLLIDFS +L INVY LGAV+LQLC++L + + V K VDPS+F+H
Sbjct: 121 ACLYIACRENKKPFLLIDFSEHLRINVYVLGAVFLQLCKLLSLEEHPIVQKPVDPSLFIH 180
Query: 181 KFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+F L N V TA I+ASMKRDW+ TGRKPSGLCGAALY+SAL++GLK SK+DI
Sbjct: 181 RFAAGLPGETNMGVSKTALRIIASMKRDWLQTGRKPSGLCGAALYISALSYGLKCSKTDI 240
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNN-GPKVSGMNEV 299
VKIVHICEATL KRLIEFENT+SGSLTIE+F + +EL + ++ +N G V G E+
Sbjct: 241 VKIVHICEATLTKRLIEFENTESGSLTIEEFNMKAEELEKEYSSTKQSNIGSTVPGKGEL 300
Query: 300 LCKHKDTGK-PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENS--- 355
LC+HK +GK PFA GLC CY EF+ +S GLEGG++PPAFQ AER+RM KA+AEEN+
Sbjct: 301 LCEHKGSGKPPFAHGLCEICYGEFIKLSGGLEGGSEPPAFQRAERDRMAKAAAEENADSN 360
Query: 356 --SFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGV-DATTEASDG 412
++ S SP + + + EP+ + + + AS + EG + G D A D
Sbjct: 361 QIQLDKGSSSPDVCGNESSKLAEPKSI--GASDKQASID-EGAPSDLHGADDENANAGDE 417
Query: 413 SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 472
S++ SDIDD EVDGYLHNE+EK +KKIIWE MN+EYLEEQAAKEAAAAAAK A EAS+K+
Sbjct: 418 SESLSDIDDVEVDGYLHNEKEKQFKKIIWEAMNKEYLEEQAAKEAAAAAAKEAYEASFKD 477
Query: 473 CPEGLQAAQELAAAAAAAVAKSRK 496
PEGL+AAQELAAA AAAVAKSRK
Sbjct: 478 NPEGLKAAQELAAATAAAVAKSRK 501
>gi|297842649|ref|XP_002889206.1| hypothetical protein ARALYDRAFT_316772 [Arabidopsis lyrata subsp.
lyrata]
gi|297335047|gb|EFH65465.1| hypothetical protein ARALYDRAFT_316772 [Arabidopsis lyrata subsp.
lyrata]
Length = 574
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 275/554 (49%), Positives = 362/554 (65%), Gaps = 47/554 (8%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC CA++V G RP+D L CD CG++LE+ NFST+ TFVKNAAGQSQ SGN V +++
Sbjct: 1 MVWCKHCAKNVPGIRPFDGGLACDLCGRILENFNFSTDVTFVKNAAGQSQASGNIVTSVK 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER A D++R +K+AL IG E D+++ +A F+ +A +NFTKGRRTE VQ
Sbjct: 61 SGLSSSRERRKRIARDELRNLKDALGIGDERDDVIVMAAEFFEMATDQNFTKGRRTELVQ 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+SCLYL CR+K PFLLIDFS+YL ++VYELG+VYLQLC++LY+ N + VDPSIF+
Sbjct: 121 SSCLYLTCREKKIPFLLIDFSSYLRVSVYELGSVYLQLCEMLYLVQNENYEELVDPSIFI 180
Query: 180 HKFTDRLLPGGNK-------KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
+F + LL G + KV TA +I++SMKRDW+ TGRKPSG+CGAA+Y++AL+HG
Sbjct: 181 PRFMNNLLKGAHNITKNVWDKVFGTATNIISSMKRDWMQTGRKPSGICGAAIYIAALSHG 240
Query: 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPK 292
+ S++DI KIVH+CEAT+ KRL EF NT +GSLT+++ + + PN+
Sbjct: 241 IMCSRADIAKIVHMCEATITKRLNEFANTKAGSLTVDELDKSEPISRKEAFTPRPNSDEG 300
Query: 293 VSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAE 352
V V C+HKD K F GLC+SC+++F+ IS G+ GG+DPPAFQ AE+ERM KA+ E
Sbjct: 301 V-----VNCQHKDL-KRFGYGLCKSCHDDFIKISGGIVGGSDPPAFQRAEKERMEKAARE 354
Query: 353 ENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDG 412
EN + +S+ +K Q PE +G+G+ G + E SD
Sbjct: 355 ENEGGVGSDEQVNVSKGEK-QCPE---------------KGQGEKY---GGEEHAEYSDD 395
Query: 413 SDNF--SDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
++ SD DD EVD L E+E K W NREY++EQA KEAA AA
Sbjct: 396 DESGICSDDDDSEVDHILLGEDETLLKTTAWNLQNREYVKEQAEKEAALKAA-------- 447
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 530
NCPE A+ L A+ AAVAKSRKEK+QKRA E KN+ P T +EA RR L +KRL
Sbjct: 448 -NCPED---ARNLVEASKAAVAKSRKEKRQKRAEEEKNAPPPATTMEAVRRTLERKRLGG 503
Query: 531 KINYDVLEKLFDDS 544
INYDVLE+LFD S
Sbjct: 504 LINYDVLEELFDTS 517
>gi|356560345|ref|XP_003548453.1| PREDICTED: uncharacterized protein LOC100817609 [Glycine max]
Length = 604
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 286/556 (51%), Positives = 377/556 (67%), Gaps = 47/556 (8%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MV+CS CA++V G R D LCC CG+VLED+ F+ E +FVKNAAGQS+LSGN+VRT+Q
Sbjct: 1 MVYCSHCAKNVAGERLDDGFLCCGSCGRVLEDYFFAEEPSFVKNAAGQSKLSGNYVRTVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR---FYGIAVARNFTKGRRTEQ 117
SEY SR+R +++A+D+++ + + +G +DE H+A++ FY IA+ RNFT+GR++EQ
Sbjct: 61 SEYSESRQRTLDRAYDEIKYL--SFGLGVNDE--HMAEQALTFYKIALERNFTRGRKSEQ 116
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
V A+CLY+A R Y LGAV+LQLCQVL + + V K VDPS+
Sbjct: 117 VHAACLYIAFR-------------------YVLGAVFLQLCQVLRLGEHPIVQKPVDPSL 157
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
F+H++T LL G+K V DTA I+ASMKRDW+ TGRKPSGLCGAALY+SAL HG+K SK
Sbjct: 158 FIHRYTKNLLKRGSKAVSDTALAIVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSK 217
Query: 238 SDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMN 297
DI+KIVH+CEATL KRL+EFE+T+S SLT+E+ KE HE +P G K
Sbjct: 218 PDILKIVHVCEATLTKRLVEFEDTESSSLTVEELNTMAKE-HEKNPTIMPEGGLKGCISK 276
Query: 298 EVLCKHK-DTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKA----SA 351
++LC+HK D+G FA GLC +CY++F +S GL GG DPPAFQ AERER+ K S
Sbjct: 277 DLLCEHKEDSGVTHFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAERERLKKTLPEESV 336
Query: 352 EENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASD 411
+E + S+ F S + + + PE + N A+ +G+ D + D
Sbjct: 337 DEACALANASNDQFKSHKEDLPAYVPESIGAN-VEHEATKDGKYD---------DSHRED 386
Query: 412 GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 471
S+ SDIDD EVD Y+H+EE KH KKI+WE NREYLEEQAAKEAAAAA K A EA ++
Sbjct: 387 ESETLSDIDDEEVDLYIHDEEGKHIKKILWETANREYLEEQAAKEAAAAANKKAFEAKFE 446
Query: 472 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR---- 527
NC E + AA+ELAA++ AVAKSRKE +QKRA EAKN+ PAQ+A EA +M KKR
Sbjct: 447 NCSEDILAARELAASSIEAVAKSRKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQG 506
Query: 528 LSSKINYDVLEKLFDD 543
L SK+N+++L +LFD+
Sbjct: 507 LKSKVNFELLNELFDE 522
>gi|297814368|ref|XP_002875067.1| hypothetical protein ARALYDRAFT_346626 [Arabidopsis lyrata subsp.
lyrata]
gi|297320905|gb|EFH51326.1| hypothetical protein ARALYDRAFT_346626 [Arabidopsis lyrata subsp.
lyrata]
Length = 532
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 264/553 (47%), Positives = 339/553 (61%), Gaps = 91/553 (16%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC+ CA++V G RP+D L CD CG++LE+ NFS E TFVKNAAGQSQ SGN V ++Q
Sbjct: 1 MVWCNHCAKNVPGIRPFDGGLACDLCGRILENFNFSDEVTFVKNAAGQSQASGNIVTSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SR R A D+ R +K+AL IG E D+++ A RF+ +A +NFTKGRRTE VQ
Sbjct: 61 SGIPSSRVRRFRIARDEFRNLKDALGIGDERDDVIDTAARFFEMATEQNFTKGRRTELVQ 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+SCLYL CR+K PFLLIDFS+YL ++VYELG+VYLQLC++ Y+ N + VDPSIF+
Sbjct: 121 SSCLYLTCREKKIPFLLIDFSSYLRVSVYELGSVYLQLCEMFYLVQNGNYEELVDPSIFI 180
Query: 180 HKFTDRLLPGGNK-------KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
+F + LL G + KV TA +I++SMKRDW+ TGRKPSG+CGAA+Y++AL+HG
Sbjct: 181 PQFMNNLLKGAHNIAKNVLDKVLGTATNIISSMKRDWMQTGRKPSGICGAAIYIAALSHG 240
Query: 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPK 292
+ S++DI KIVH+CEAT+ KRL EF NT++ SLT+++ + L E + PN+
Sbjct: 241 IMCSRADIAKIVHMCEATITKRLDEFANTEAASLTVDELDKSENILREKPFSPRPNSDEG 300
Query: 293 VSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAE 352
V V CKHKD K F GLC+SC++ FM IS G+ GG+DPPAFQ AE+ERM KA+ E
Sbjct: 301 V-----VNCKHKDL-KRFGFGLCKSCHDAFMKISGGVVGGSDPPAFQRAEKERMEKAARE 354
Query: 353 ENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPG-VDATTEASD 411
EN EG K+ G D EA D
Sbjct: 355 EN---------------------------------------EGAIEKSEGETDWDAEAPD 375
Query: 412 GSDNFSDID-DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
S N SD+D D EVDG NE+EK KI WE NR+YLE LE
Sbjct: 376 ESGNLSDLDGDAEVDGCFLNEDEKLMTKISWELDNRDYLE-------------VNLE--- 419
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 530
AVAKSRKEK+QKRA EAKN+ P TA+EA RR++ +KRLS
Sbjct: 420 -------------------AVAKSRKEKRQKRAEEAKNAPPPATAMEAVRRIVKRKRLSG 460
Query: 531 KINYDVLEKLFDD 543
IN D L++L D+
Sbjct: 461 -INCDFLDELLDN 472
>gi|115463095|ref|NP_001055147.1| Os05g0305100 [Oryza sativa Japonica Group]
gi|113578698|dbj|BAF17061.1| Os05g0305100 [Oryza sativa Japonica Group]
gi|222631042|gb|EEE63174.1| hypothetical protein OsJ_17983 [Oryza sativa Japonica Group]
Length = 574
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 264/559 (47%), Positives = 355/559 (63%), Gaps = 58/559 (10%)
Query: 2 VWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
++CS C + + P + CC CGKVL+D + E TF K A GQ++L+G+ + +I+
Sbjct: 1 MYCSHCQDNCPVVKDPDKNYTCCGLCGKVLDDQVYDGEPTFQKGADGQARLAGSILSSIE 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
S S ER + K +++RQ+ ++L++ D I+ +A R+Y +AV +NFT+GRRT V A
Sbjct: 61 SGNSVSHERTINKGREEIRQIVSSLHVAGGDTIISMAHRYYTLAVDKNFTRGRRTTHVAA 120
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLY+ACRQ K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ + K +DPS+F+H
Sbjct: 121 ACLYIACRQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLLLAEHPVIQKLIDPSLFIH 180
Query: 181 KFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+FT+RLL + V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DI
Sbjct: 181 RFTERLLGKRDNAVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGYDYTKADI 240
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVL 300
V +VH+CEATL KRLIEFENTDSGSLTIE+F+A+ E V P +G EVL
Sbjct: 241 VAVVHVCEATLTKRLIEFENTDSGSLTIEEFLAKADE-QVLVTKISPKSG-------EVL 292
Query: 301 CKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKA------SAEEN 354
CKHKD + FA GLC CY +FM +S GLEGG+DPPAFQ AE++R+ A +A +
Sbjct: 293 CKHKDKAEHFAHGLCEKCYNKFMKLSGGLEGGSDPPAFQRAEKQRLEAAKNAKGTAASKE 352
Query: 355 SSFE-----RESD------SPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGV 403
++ E RESD +P + + S P + T EGEG + K
Sbjct: 353 AALESVCEARESDVENNITTPPKNIIGDKHSTIPSVKVAGDSVATEDPEGEGKNDK---- 408
Query: 404 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 463
A +G ++ SDIDD EVDGYLHNEEE YKKIIWEEMN+EYLEEQAAK A AA
Sbjct: 409 -----ADEGPESLSDIDDAEVDGYLHNEEETQYKKIIWEEMNKEYLEEQAAKAALAA--- 460
Query: 464 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 523
AA V + K K+++ + KN+ PAQT EAT+ ML
Sbjct: 461 --------------------ELAARGVVVEEGKRKRRRHNEDGKNATPAQTPAEATQNML 500
Query: 524 TKKRLSSKINYDVLEKLFD 542
+KRL SKIN + + KL++
Sbjct: 501 KRKRLGSKINDEAVNKLYN 519
>gi|242088663|ref|XP_002440164.1| hypothetical protein SORBIDRAFT_09g027090 [Sorghum bicolor]
gi|241945449|gb|EES18594.1| hypothetical protein SORBIDRAFT_09g027090 [Sorghum bicolor]
Length = 579
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 271/554 (48%), Positives = 359/554 (64%), Gaps = 44/554 (7%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MV+C+ CA + + P +CC CGKVL+ ++ E TFVK G+S+L+G+ + +I
Sbjct: 1 MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTEEPTFVKGNTGESRLAGSILASI 60
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S Y S +R ++K D++RQ+ N LN+ + IV A RFY +AV RNFT+GRRT V
Sbjct: 61 ESGYSISHQRTLDKGKDEIRQIVNNLNVSGGETIVSKAYRFYELAVDRNFTRGRRTTHVA 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY+ACRQ K +LLIDFS+YL I+VY LGAV+LQLCQVL +AD V K VDPS+F+
Sbjct: 121 AACLYIACRQTKKAYLLIDFSDYLQISVYVLGAVFLQLCQVLLLADHPVVQKLVDPSLFI 180
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
H+FT RLL + V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+D
Sbjct: 181 HRFTHRLLGKRDNAVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGKNYTKAD 240
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEV 299
IV +VH+CEATL KRLIEFENTDSGSLTIE+F+A E +E +P + PK SG E+
Sbjct: 241 IVSVVHVCEATLTKRLIEFENTDSGSLTIEEFLATADEYNE---EPVPKHSPK-SG--EI 294
Query: 300 LCKHKDTG--KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSF 357
LCKHK+ + FA GLC CY +F +S GLEGGADPPAFQ AE++R+ A E ++
Sbjct: 295 LCKHKNKKGFEHFAHGLCEKCYNKFTKLSGGLEGGADPPAFQRAEKKRLEAAKRAEEAAT 354
Query: 358 ERES---DSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGD--HTKTPGVDA-----TT 407
+E+ +S ++ +V+S R K + +S G G+ + P D
Sbjct: 355 VKEAALEESLCNTQNSEVESTITPR--KGLSGHKSSTVGSGELINDSVPPKDPEEGGENC 412
Query: 408 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 467
E + S++ SDIDD EVD YLHNEEEK YKKIIWEEMN+EYLEEQAAKEA AA
Sbjct: 413 EGNADSESLSDIDDAEVDWYLHNEEEKQYKKIIWEEMNKEYLEEQAAKEALAA------- 465
Query: 468 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 527
AA V + K+K+++R + K+S PA+T EAT ML +K
Sbjct: 466 ----------------ELAARGIVVEEGKKKKRRRNEDTKSSTPAETPAEATYNMLKRKG 509
Query: 528 LSSKINYDVLEKLF 541
L SKIN + +L+
Sbjct: 510 LGSKINEGAVGELY 523
>gi|356570349|ref|XP_003553352.1| PREDICTED: uncharacterized protein LOC100789154 [Glycine max]
Length = 639
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 287/596 (48%), Positives = 378/596 (63%), Gaps = 89/596 (14%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQ------------ 48
MV+CS CA++V G R D LCC CG+VLED+ F+ E +FVKNAAGQ
Sbjct: 1 MVYCSHCAKNVAGERLDDGFLCCGSCGRVLEDYFFAEEPSFVKNAAGQRKRLELLLLRID 60
Query: 49 ----------------------------SQLSGNFVRTIQSEYGASRERLMEKAFDDMRQ 80
S+LSGN+VRT+QSEY SR+R +++A+D+++
Sbjct: 61 GDLDYLRFKFDCGYGLREKGRICGSHHESKLSGNYVRTVQSEYSESRQRTLDRAYDEIKY 120
Query: 81 MKNALNIGESDEIVHVAKR---FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 137
+ + +G +DE H+A++ FY IA+ RNFT+GR++EQV A+CLY+A R
Sbjct: 121 L--SFGLGVNDE--HMAEQALTFYKIALERNFTRGRKSEQVHAACLYIAFR--------- 167
Query: 138 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197
Y LGAV+LQLCQVL + + V K VDPS+F+H++T LL G+K V DT
Sbjct: 168 ----------YVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTKNLLKRGSKAVSDT 217
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 257
A I+ASMKRDW+ TGRKPSGLCGAALY+SAL HG+K SK DI+KIVH+CEATL KRL+E
Sbjct: 218 ALAIVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILKIVHVCEATLTKRLVE 277
Query: 258 FENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHK-DTG-KPFACGLC 315
FE+T+S SLT+E+ KE HE + +P G K ++LC+HK D+G FA GLC
Sbjct: 278 FEDTESSSLTVEELNTMAKE-HEKNSMIMPGGGLKGCISKDLLCEHKEDSGVTHFALGLC 336
Query: 316 RSCYEEFMTISEGLEGGADPPAFQVAERERMVKA----SAEENSSFERESDSPFMSRVDK 371
+CY++F +S GL GG DPPAFQ AERER K S +E + S+ F S +
Sbjct: 337 EACYKDFDKLSGGLGGGLDPPAFQRAERERFKKTLPEESVDEACALANASNDQFKSHKED 396
Query: 372 VQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNE 431
+ + PER A+ +G+ D + D S+ SDIDD EVD Y+H+E
Sbjct: 397 LHAYVPERAN---VEHEATKDGKYD---------DSHREDESETLSDIDDEEVDLYIHDE 444
Query: 432 EEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAV 491
E KH KK++WE NREYLEEQAAKEAAAAA K A EA+++NC E L AA+ELAA++A AV
Sbjct: 445 EGKHIKKLLWETANREYLEEQAAKEAAAAANKKAFEANFENCSEDLLAARELAASSAEAV 504
Query: 492 AKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR----LSSKINYDVLEKLFDD 543
AKSRKE +QKRA EAKN+ PAQ+A EA +M KKR L SK+N+++L +LFD+
Sbjct: 505 AKSRKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQGLKSKVNFELLNELFDE 560
>gi|357160321|ref|XP_003578728.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like
[Brachypodium distachyon]
Length = 580
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 268/554 (48%), Positives = 353/554 (63%), Gaps = 44/554 (7%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
M +C+ CA + + P +CC CGKVL+ ++ E TFVK+ GQSQ +GN + +I
Sbjct: 1 MFYCTHCADYCPYIKDPDKGYICCGTCGKVLDQDIYNAEPTFVKDGLGQSQRAGNVISSI 60
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S S ER + K D++ Q+ +L++G D I+ +A +FY +AV NFT+GRRT QV
Sbjct: 61 ESGSSLSHERTLMKGRDEIWQIVTSLHVGGGDTIIDMAHKFYTLAVDHNFTRGRRTTQVA 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY+ACRQ K +LLIDFS+YL I+VY LGAV+LQLCQVL +A+ V K +DPS+F+
Sbjct: 121 AACLYIACRQSKKAYLLIDFSDYLKISVYVLGAVFLQLCQVLLLAEHPIVQKLIDPSLFI 180
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
H+FT+RLL + V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++KSD
Sbjct: 181 HRFTERLLGKRDNAVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGYNYTKSD 240
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGP-KVSGMNE 298
IV +VHICEATL KRLIEFENTDSGSLTIEDF+A+ E P + P + SG E
Sbjct: 241 IVGVVHICEATLTKRLIEFENTDSGSLTIEDFLAKADEEQ-------PVSKPSRKSG--E 291
Query: 299 VLCKHKDTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSF 357
VLCKHKD + FA GLC CY +F+ +S GLEGGADPPAFQ AER+R+ A E ++
Sbjct: 292 VLCKHKDKDTEHFAHGLCEKCYNKFIKMSGGLEGGADPPAFQRAERQRLEAAKKSEEAAA 351
Query: 358 ER-----ESDSPFMSR--VDKVQSPEPERV-PKNCTTQTASNEGEGDHTKTPGVDATTEA 409
+ ES+ + D + S + + K+ T + N + +K P V
Sbjct: 352 LKEAALGESNCEIQNSDVEDNIISLKKGPIGDKSSTIPSEQNANDNIASKDPEVGGENSK 411
Query: 410 SDGS-DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 468
D ++FSDIDD EVDGYLHNEEE HYKKIIWEEMN+EY+EEQAAKEA AA
Sbjct: 412 PDADPESFSDIDDVEVDGYLHNEEETHYKKIIWEEMNKEYIEEQAAKEALAA-------- 463
Query: 469 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 528
AA ++K+++R + KN PA+T EAT ML +K L
Sbjct: 464 ---------------ELAARGVGVGGGQQKKRRRNEDTKNLSPAETPAEATYNMLKRKGL 508
Query: 529 SSKINYDVLEKLFD 542
SKIN + + L++
Sbjct: 509 GSKINVEAVGGLYN 522
>gi|302798535|ref|XP_002981027.1| hypothetical protein SELMODRAFT_444750 [Selaginella moellendorffii]
gi|300151081|gb|EFJ17728.1| hypothetical protein SELMODRAFT_444750 [Selaginella moellendorffii]
Length = 636
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 255/588 (43%), Positives = 363/588 (61%), Gaps = 69/588 (11%)
Query: 1 MVWCSSCAR-HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MVWCS C + + H D +CC CG+VL+D+ FS+E TF K+A+GQSQ GN V+
Sbjct: 1 MVWCSYCGKDQIAEHN--DGFICCTGCGRVLDDNVFSSEPTFAKSASGQSQFVGNIVK-- 56
Query: 60 QSEYGA------------------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFY 101
QS+YG S +R ++K ++R + ++L++G D+IV A R Y
Sbjct: 57 QSQYGTYARIVDDGTGTVSGYQSNSHQRTLDKGRQEIRNIASSLSVGGGDDIVGSAHRIY 116
Query: 102 GIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL 161
+AV +NFTKGRRT QV A+CLY+ CRQ +KP+LLIDFS+ L +VY LGAV+LQLC +L
Sbjct: 117 VLAVEKNFTKGRRTSQVAAACLYIVCRQGNKPYLLIDFSDCLQTSVYLLGAVFLQLCTLL 176
Query: 162 YIADESNVLKQVDPSIFLHKFTDRLL----PGGNKK----VCDTARDILASMKRDWITTG 213
+ V K VDPS+F+H+FTDRLL PG + K + +TA I+ASMK+DWI TG
Sbjct: 177 RLDQHPMVQKPVDPSLFIHRFTDRLLHRIAPGTSSKNQFAIANTALRIVASMKQDWIQTG 236
Query: 214 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 273
R+PSG+CGAAL +S HGL+ S +D+ +V++C+AT+ KRL+EF NT++GSLT E+F A
Sbjct: 237 RRPSGICGAALLLSTRIHGLECSTADVESVVYVCKATITKRLVEFSNTEAGSLTPEEFEA 296
Query: 274 ----RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTG-KPFACGLCRSCYEEFMTISEG 328
R+KE+ ++ NNG + E+LC+HKD+G + +A GLC++CY++F+ IS G
Sbjct: 297 KAKQREKEMLSVSQTDIVNNGV----IKEILCEHKDSGAQHYAHGLCKNCYDDFVKISGG 352
Query: 329 LEGGADPPAFQVA--ERERMVK---------ASAEENSSFERESDSPFMSRVDKVQSPEP 377
L+GG+ PPAFQ A ERER++K A ++E+ + SP + K + +
Sbjct: 353 LQGGSAPPAFQRAQKERERLLKNKKRKLTAEAISDEDEDLTCTNSSPVAEKAIKKKLEQE 412
Query: 378 ERV---PKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEK 434
E + T ++E + + VD D ++ SDIDD E+ YL+ E+E
Sbjct: 413 EHSYFDADDVTESCVTHETKAEKRYEDSVD------DEPESLSDIDDVELTTYLNTEDEI 466
Query: 435 HYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKS 494
K I+W EMN+EY++EQ AKEAA A ++ A + + A AAA V S
Sbjct: 467 RLKTIVWTEMNKEYIQEQEAKEAALKAQAESMAA--------VSTSGTAAEIAAATVVMS 518
Query: 495 RKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 542
RK ++ K A N PA++A EATR+ML KKRLSSK+NY VLEK+F+
Sbjct: 519 RKARKHKHGDTA-NCKPAESAAEATRQMLEKKRLSSKLNYSVLEKMFN 565
>gi|357508865|ref|XP_003624721.1| Transcription factor IIIB 90 kDa subunit [Medicago truncatula]
gi|355499736|gb|AES80939.1| Transcription factor IIIB 90 kDa subunit [Medicago truncatula]
Length = 608
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 266/577 (46%), Positives = 355/577 (61%), Gaps = 64/577 (11%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MV+C C ++V + L C CGKVLED + E TF KN+AGQS++SGN V+ ++
Sbjct: 1 MVYCDHCVKNVRAELHEECYLVCTSCGKVLEDQILTEEPTFTKNSAGQSKISGNLVKAVE 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
E ASR+R + +A +M + +L + E D +V A+ FY IA+A+NFT+GR++EQV+A
Sbjct: 61 -ELDASRKRTLYRASKEMEYLSLSLGVSEGD-VVRQARAFYEIALAKNFTRGRKSEQVRA 118
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLYLA RQ KP+ LI+FSN L INVYELG VYLQLC+VL + + V K +DPS++LH
Sbjct: 119 ACLYLAFRQNKKPYFLIEFSNNLRINVYELGGVYLQLCEVLRLDNHPIVKKPIDPSLYLH 178
Query: 181 KFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
K+T LL N V TA +I+A M RDW+ TGRKP GL AALY SA HG K SK DI
Sbjct: 179 KYTSNLLGHRNGVVSATALNIIAQMNRDWLQTGRKPGGLFAAALYTSANAHGHKVSKRDI 238
Query: 241 ---------------------------------VKIVHICEATLMKRLIEFENTDSGSLT 267
+++ HICE T+ KRLIE+E TDS +LT
Sbjct: 239 GLILLVSSRALSHSVPHRLSSQTSAAIPSPVILLRLFHICEQTMNKRLIEYEMTDSSNLT 298
Query: 268 IEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKP-FACGLCRSCYEEFMTIS 326
+E+ A KE +E +PN+ S ++C+HK+ P FA GLC +CY++F +S
Sbjct: 299 VEELNAMAKE-NEKNPVVMPNSKFNGSTSTPLVCEHKEMEVPHFALGLCETCYKDFDKVS 357
Query: 327 EGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTT 386
G GG DPPAFQ AE+ER+ K +++EN+ + S+S + + + ER
Sbjct: 358 GGFGGGLDPPAFQRAEQERVKKTNSKENADVVKASNSACKGQKEDFPASVLERD------ 411
Query: 387 QTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNR 446
D +TEA D S NFSDIDD EVD +L NEEEK Y+KIIWE NR
Sbjct: 412 -----------------DTSTEAQDESGNFSDIDDQEVDAFLFNEEEKSYRKIIWENQNR 454
Query: 447 EYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEA 506
EYLEEQAAKEAAAAA K EA+ +NCP ++EL + A+VAK+RKEK Q+RA +A
Sbjct: 455 EYLEEQAAKEAAAAAQKKIYEANLENCP---VESRELYESTTASVAKTRKEK-QRRAQQA 510
Query: 507 KNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 543
K SGPAQ+A+EA +M+ +K LS+K+N D KLF+D
Sbjct: 511 KKSGPAQSAVEAACQMVKRKGLSNKVNMDNFAKLFED 547
>gi|226492330|ref|NP_001141990.1| uncharacterized protein LOC100274140 [Zea mays]
gi|194706710|gb|ACF87439.1| unknown [Zea mays]
gi|413946300|gb|AFW78949.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 580
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/553 (47%), Positives = 354/553 (64%), Gaps = 44/553 (7%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MV+C+ CA + + P +CC CGKVL+ ++ E TFVK+ GQS+L+G+ + +I
Sbjct: 1 MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTDEPTFVKDNKGQSRLAGSILESI 60
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S Y SR+R ++K D++RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V
Sbjct: 61 ESGYSMSRQRTLDKGRDEIRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVA 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY+ACRQ K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+
Sbjct: 121 AACLYIACRQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFI 180
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
H+FT LL N V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+D
Sbjct: 181 HRFTKLLLGRRNNDVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKAD 240
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELH-EGVAANLPNNGPKVSGMNE 298
IV +VH+CEATL KRLIEFENTDSGSLTIE+F+A E + E V+ + P +G E
Sbjct: 241 IVSVVHVCEATLTKRLIEFENTDSGSLTIEEFLATADESNEEPVSKHSPKSG-------E 293
Query: 299 VLCKHKDTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSF 357
+LCKHKD G + FA GLC CY +F +S GLEGG+DPPAFQ AE++R+ A E ++
Sbjct: 294 ILCKHKDKGFEHFAHGLCEKCYNKFTKLSGGLEGGSDPPAFQRAEKKRLEAAKRAEEAAA 353
Query: 358 ERESDSPFM------SRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASD 411
+E+ S V+ +P + + + +++ S D + E +
Sbjct: 354 AKEAALEESLCDTQNSEVESAMTPR-KGLSGDKSSKMGSEGLINDSMPPKDPEEGGENCE 412
Query: 412 GS---DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 468
G+ ++ SDIDD EVDGYLHNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 413 GNADPESLSDIDDAEVDGYLHNEEETQYKKIIWEEMNKEYLEEQAAKEALA--------- 463
Query: 469 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 528
A AA + +K++KR K+S PA+T EAT ML +K L
Sbjct: 464 ---------------AELAARGIDPEAGKKKRKRNEGTKSSTPAETPAEATCNMLKRKGL 508
Query: 529 SSKINYDVLEKLF 541
SKIN +++L+
Sbjct: 509 GSKINVGAVDELY 521
>gi|145361010|ref|NP_182035.2| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
gi|330255413|gb|AEC10507.1| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
Length = 557
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 261/548 (47%), Positives = 336/548 (61%), Gaps = 67/548 (12%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC C ++V G RPYD+ L CD CG++LE+ NFSTE TFVKNAAGQSQ SGN ++++Q
Sbjct: 1 MVWCKHCGKNVPGIRPYDAALSCDLCGRILENFNFSTEVTFVKNAAGQSQASGNILKSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGES-DEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER++ KA D++ +++AL IG+ D+++ +A F+ IA+ NFTKGR E V
Sbjct: 61 SGMSSSRERIIRKATDELMNLRDALGIGDDRDDVIVMASNFFRIALDHNFTKGRSKELVF 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+SCLYL CRQ LLIDFS+YL ++VY+LG+VYLQLC +LYI + N K VDPSIF+
Sbjct: 121 SSCLYLTCRQFKLAVLLIDFSSYLRVSVYDLGSVYLQLCDMLYITENHNYEKLVDPSIFI 180
Query: 180 HKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+F++ LL G N K+ TA I+ASMKRDW+ TGRKPSG+CGAALY +AL+HG+K SK+
Sbjct: 181 PRFSNMLLKGAHNNKLVLTATHIIASMKRDWMQTGRKPSGICGAALYTAALSHGIKCSKT 240
Query: 239 DIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNE 298
DIV IVHICEATL KRLIEF +T++ SLT ++ K E + AA P
Sbjct: 241 DIVNIVHICEATLTKRLIEFGDTEAASLTADEL--SKTEREKETAALRSKRKPNFYKEGV 298
Query: 299 VLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM-VKASAEENSSF 357
VLC H+D KP GLC SCY+EFMT+S GLEGG+DPPAFQ AE+ERM KAS+EEN
Sbjct: 299 VLCMHQDC-KPVDYGLCESCYDEFMTVSGGLEGGSDPPAFQRAEKERMEEKASSEEND-- 355
Query: 358 ERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFS 417
K +D SD S S
Sbjct: 356 -----------------------------------------KQVNLDG---HSDESSTLS 371
Query: 418 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 477
D+DD E+D Y EE KI ++ N Y E++AAK+AA A
Sbjct: 372 DVDDRELDCYFRTPEEVRLVKIFFDHENPGYDEKEAAKKAAGLNA--------------C 417
Query: 478 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 537
A + A+ AA AKSRKEK+Q+RA E KN+ P T +EA M+ +K+ IN D L
Sbjct: 418 NNASNIFEASKAAAAKSRKEKRQQRAEEEKNAPPPATGIEAVDSMVKRKKFRD-INCDYL 476
Query: 538 EKLFDDSV 545
E+LFD SV
Sbjct: 477 EELFDASV 484
>gi|413948296|gb|AFW80945.1| hypothetical protein ZEAMMB73_313717 [Zea mays]
gi|413948297|gb|AFW80946.1| hypothetical protein ZEAMMB73_313717 [Zea mays]
Length = 588
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 266/570 (46%), Positives = 350/570 (61%), Gaps = 69/570 (12%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
M++C+ CA + + P +CC CGKVL+ ++ E TFVK+ GQS+L+G+ + +I
Sbjct: 1 MIYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTDEPTFVKDNTGQSRLAGSILASI 60
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S Y S +R ++K D++RQ+ N L++ + +V A RFY +AV RNFT+GRRT V
Sbjct: 61 ESGYSISHQRTLDKGRDEIRQIVNNLHVSGGETVVSKAYRFYELAVDRNFTRGRRTSHVA 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY+ACRQ K +LLIDFS+YL I+VY LGAV+LQLCQVL +AD V K VDPS+F+
Sbjct: 121 AACLYIACRQSKKAYLLIDFSDYLQISVYVLGAVFLQLCQVLLLADHPVVQKLVDPSLFI 180
Query: 180 HKFTDRLL---------PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
H+FT LL +++V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+
Sbjct: 181 HRFTKCLLGRRDNAVSDTAFSREVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALS 240
Query: 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNG 290
HG ++K+DIV +VH+CEATL KRLIEFENTDSGSLTIE+F+A E +E A++
Sbjct: 241 HGCNYTKADIVSVVHVCEATLTKRLIEFENTDSGSLTIEEFLATADEYNE---ASVSKYS 297
Query: 291 PKVSGMNEVLCKHKDTGKP---FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMV 347
PK SG E+LCKHK GK FA GLC C+ +F +S GLEGGA+PPAFQ AE +R+
Sbjct: 298 PK-SG--EILCKHK--GKDFEHFAHGLCEKCFNKFTKLSGGLEGGANPPAFQRAENKRLE 352
Query: 348 KASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATT 407
A E ++ +E+ + Q+ E E +T T GD + T G
Sbjct: 353 AAKRAEEAAAVKEAAL--EESLCDTQNSEIE------STTTPKKALSGDKSSTIGSGGLI 404
Query: 408 EAS-------DGSDN---------FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEE 451
S +G +N SDIDD EVD YLHNEEE YKKIIWEEMN+EYLEE
Sbjct: 405 NDSVPPKDPEEGGENCEGNADPESLSDIDDVEVDWYLHNEEETQYKKIIWEEMNKEYLEE 464
Query: 452 QAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGP 511
QAAKEA A A AA + +K++KR + K+S P
Sbjct: 465 QAAKEALA------------------------AELAARGIVVEEGKKKRKRNEDTKSSTP 500
Query: 512 AQTALEATRRMLTKKRLSSKINYDVLEKLF 541
A T EAT ML +K L SKIN + +L+
Sbjct: 501 ADTPAEATYNMLKRKGLGSKINEGAVGELY 530
>gi|297789078|ref|XP_002862547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297308133|gb|EFH38805.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 420
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 219/465 (47%), Positives = 289/465 (62%), Gaps = 63/465 (13%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC+ C ++V G RP+D L CD CG++LE+ NFST+ TFVKNAAGQSQ SGN V+++Q
Sbjct: 1 MVWCNHCGKNVPGIRPFDGALSCDLCGRILENFNFSTQVTFVKNAAGQSQASGNIVKSVQ 60
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIGES-DEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
S +SRER + A D++ +++AL IG+ D+++ +A F+ A+ NFTKGRR+E V
Sbjct: 61 SGMSSSRERRIRIAIDELMNLRDALGIGDDRDDVIVMASNFFRTALDLNFTKGRRSELVL 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+SCLYL+CRQ LLI FS+YL ++VYELG+VYLQ C +LYI + N K VDPSIF+
Sbjct: 121 SSCLYLSCRQLKFAVLLIHFSSYLRVSVYELGSVYLQFCDMLYITENHNYEKLVDPSIFI 180
Query: 180 HKFTDRLLPGGNKK-----VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+FT+ LL G ++K V DTA DI+ASMKRDW+ TGRKPSG+CGAALY +AL+HG+K
Sbjct: 181 PRFTNMLLKGAHRKKVVGTVVDTATDIIASMKRDWMQTGRKPSGICGAALYTAALSHGIK 240
Query: 235 FSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVS 294
SK+DIVKIVHICEATL KRLIEF NT++ S T ++ ++E + N P
Sbjct: 241 CSKTDIVKIVHICEATLTKRLIEFGNTEAASFTADELSKTERERKKETELRSKRN-PISY 299
Query: 295 GMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM-VKASAEE 353
VLC H+D KP GLC+SCY+EFM +S GLEGG+DPPAFQ AE+ERM KAS EE
Sbjct: 300 KEGVVLCMHQDC-KPVDYGLCKSCYDEFMKVSGGLEGGSDPPAFQRAEKERMEEKASREE 358
Query: 354 NSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGS 413
N + +++G D + T
Sbjct: 359 ND-------------------------------KQLNSDGHSDESST------------- 374
Query: 414 DNFSDIDDFE--------VDGYLHNEEEKHYKKIIWEEMNREYLE 450
SD+DD E +D Y N EE +I+++ N EY E
Sbjct: 375 --LSDVDDRESDRFTVSQLDCYFRNPEEVRQVEIVFDLTNPEYNE 417
>gi|334184087|ref|NP_178237.3| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
gi|330250334|gb|AEC05428.1| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
Length = 548
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 254/549 (46%), Positives = 347/549 (63%), Gaps = 63/549 (11%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
MVWC CA++V RP+D L CD CG++LE+ NFST+ TFVKNAAGQ N V ++
Sbjct: 1 MVWCKHCAKNVPKIRPFDGGLACDLCGRILENFNFSTDVTFVKNAAGQV---CNIVTSVG 57
Query: 61 SEYGASRERLMEKAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+ +SR+R KA D++R +K+AL IG E D++V +A FY A+ +NFTKGRR E VQ
Sbjct: 58 NS--SSRDRRRRKAIDELRNLKDALGIGDERDDVVDMAAVFYEAAMDQNFTKGRRAELVQ 115
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+SCLYLAC +YL ++VYELG+VYLQLC++LY+ N + VDPSIF+
Sbjct: 116 SSCLYLAC-------------SYLRVSVYELGSVYLQLCEMLYLVQNKNYEELVDPSIFI 162
Query: 180 HKFTDRLLPGGN---KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
+FT+ LL G + K V +TA++I++SMKRDWI TGRKPSG+CGAA+Y++AL+HG+ +S
Sbjct: 163 PRFTNSLLKGAHAKAKDVANTAKNIISSMKRDWIQTGRKPSGICGAAIYMAALSHGIMYS 222
Query: 237 KSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGM 296
++DI K+VH+CEAT+ KRL EF NT++GSLT+++ ++ L + PN+ V
Sbjct: 223 RADIAKVVHMCEATITKRLNEFANTEAGSLTVDELDESEEILRKETFTPRPNSDKGV--- 279
Query: 297 NEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSS 356
V CKHKD K F GLC+SC+++F+ IS G+ GG+DPPA+Q AE+ERM KA+ EEN
Sbjct: 280 --VNCKHKDL-KRFGYGLCKSCHDDFIIISGGVVGGSDPPAYQRAEKERMEKAAREENE- 335
Query: 357 FERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNF 416
+ + E V K + S +GEG+ T G + E SD SD
Sbjct: 336 ----------GGIGNLNHDEQVNVSKR--AKKCSEKGEGE---TYGGERHAEYSDESDIC 380
Query: 417 SDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEG 476
SD DD EV+ L E+E K W N++YLEEQA KEAA AA NCPE
Sbjct: 381 SDDDDSEVEHVLLGEDETRLKTTAWNLQNKDYLEEQAEKEAALKAA---------NCPED 431
Query: 477 LQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN-YD 535
A+ L A+ AAVA SRKEK++KRA EAKN+ P+ TA EA+ + ++N +
Sbjct: 432 ---ARNLVEASKAAVANSRKEKRRKRAEEAKNAPPSATATEASYTE------TQRVNQHH 482
Query: 536 VLEKLFDDS 544
VL++L D S
Sbjct: 483 VLDELLDTS 491
>gi|413946304|gb|AFW78953.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 515
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 237/487 (48%), Positives = 313/487 (64%), Gaps = 43/487 (8%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SR+R ++K D++RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V A+CLY+
Sbjct: 2 SRQRTLDKGRDEIRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVAAACLYI 61
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
ACRQ K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+H+FT
Sbjct: 62 ACRQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFIHRFTKL 121
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
LL N V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH
Sbjct: 122 LLGRRNNDVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIVSVVH 181
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFMARKKELH-EGVAANLPNNGPKVSGMNEVLCKHK 304
+CEATL KRLIEFENTDSGSLTIE+F+A E + E V+ + P +G E+LCKHK
Sbjct: 182 VCEATLTKRLIEFENTDSGSLTIEEFLATADESNEEPVSKHSPKSG-------EILCKHK 234
Query: 305 DTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDS 363
D G + FA GLC CY +F +S GLEGG+DPPAFQ AE++R+ A E ++ +E+
Sbjct: 235 DKGFEHFAHGLCEKCYNKFTKLSGGLEGGSDPPAFQRAEKKRLEAAKRAEEAAAAKEAAL 294
Query: 364 PFM------SRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGS---D 414
S V+ +P + + + +++ S D + E +G+ +
Sbjct: 295 EESLCDTQNSEVESAMTPR-KGLSGDKSSKMGSEGLINDSMPPKDPEEGGENCEGNADPE 353
Query: 415 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 474
+ SDIDD EVDGYLHNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 354 SLSDIDDAEVDGYLHNEEETQYKKIIWEEMNKEYLEEQAAKEALA--------------- 398
Query: 475 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 534
A AA + +K++KR K+S PA+T EAT ML +K L SKIN
Sbjct: 399 ---------AELAARGIDPEAGKKKRKRNEGTKSSTPAETPAEATCNMLKRKGLGSKINV 449
Query: 535 DVLEKLF 541
+++L+
Sbjct: 450 GAVDELY 456
>gi|413946301|gb|AFW78950.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 425
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 253/348 (72%), Gaps = 10/348 (2%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MV+C+ CA + + P +CC CGKVL+ ++ E TFVK+ GQS+L+G+ + +I
Sbjct: 1 MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTDEPTFVKDNKGQSRLAGSILESI 60
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S Y SR+R ++K D++RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V
Sbjct: 61 ESGYSMSRQRTLDKGRDEIRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVA 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY+ACRQ K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+
Sbjct: 121 AACLYIACRQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFI 180
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
H+FT LL N V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+D
Sbjct: 181 HRFTKLLLGRRNNDVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKAD 240
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELH-EGVAANLPNNGPKVSGMNE 298
IV +VH+CEATL KRLIEFENTDSGSLTIE+F+A E + E V+ + P +G E
Sbjct: 241 IVSVVHVCEATLTKRLIEFENTDSGSLTIEEFLATADESNEEPVSKHSPKSG-------E 293
Query: 299 VLCKHKDTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERER 345
+LCKHKD G + FA GLC CY +F +S GLEGG+DPPAFQ AE++R
Sbjct: 294 ILCKHKDKGFEHFAHGLCEKCYNKFTKLSGGLEGGSDPPAFQRAEKKR 341
>gi|148909769|gb|ABR17974.1| unknown [Picea sitchensis]
Length = 746
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/373 (50%), Positives = 253/373 (67%), Gaps = 30/373 (8%)
Query: 1 MVWCSSCARHVTGHRP-YDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MVWCS C + R + +CC CG+VL+D+ +S++ TFVK A GQSQ SGNF++
Sbjct: 1 MVWCSYCGKDQPTERDDINGFICCTGCGRVLDDNIYSSDPTFVKTAGGQSQFSGNFIKDG 60
Query: 60 Q------------SEYG---ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIA 104
Q EYG S E+ +EK +++ + +L++ ++ V+ R Y IA
Sbjct: 61 QYSSYGRLGGDLVHEYGFKSDSHEKTLEKGREEIEIIAESLSVSGREDSVNAGHRLYIIA 120
Query: 105 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164
V RNFT+GRRT+QV A+CLY+ CRQ+ KPFLLIDFS+ L INVY LGAV+LQLC++L +
Sbjct: 121 VERNFTRGRRTKQVAAACLYIVCRQEQKPFLLIDFSDVLQINVYVLGAVFLQLCKLLRLE 180
Query: 165 DESNVLKQVDPSIFLHKFTDRLLPGGNKK-----VCDTARDILASMKRDWITTGRKPSGL 219
+ K VDPS+F+H+F DRL+ + + +TA ILASMKRDW+ TGRKPSG+
Sbjct: 181 QHPIIQKPVDPSLFIHRFADRLVGRATTRKQFHSIANTALRILASMKRDWMQTGRKPSGV 240
Query: 220 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELH 279
CGAALY+SAL+HG +K+D+V IVHICE TL KRLIEFENTDSGSLTIE+F ++ KEL
Sbjct: 241 CGAALYISALSHGFGCTKADVVSIVHICEGTLTKRLIEFENTDSGSLTIEEFESKAKELE 300
Query: 280 EGV------AANLPNNGPKVSGMNEVLCKHKDTGKP-FACGLCRSCYEEFMTISEGLEGG 332
+ A N G + G+ ++LC+HKDTG FA GLC SCYEEF+ +S G++GG
Sbjct: 301 AEMQTIKVPAINAETKG--IKGITDLLCEHKDTGSAHFAHGLCHSCYEEFVKLSGGIQGG 358
Query: 333 ADPPAFQVAERER 345
+ PPAFQ AE++R
Sbjct: 359 SAPPAFQRAEKQR 371
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 397 HTKTPGVDATTEASDGS-DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 455
T+T ++ + D + SDIDD EV+ YLHN+EE K +IW EMN+EYLEEQAAK
Sbjct: 490 QTQTQSINKVEDEMDEEIETLSDIDDEEVERYLHNKEEVRLKTLIWTEMNKEYLEEQAAK 549
Query: 456 EAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTA 515
E A AAA+AA A+ EG A ELAAAAAAAVAK +K+KQ+KRA E+KN PAQ+A
Sbjct: 550 EEAIAAAEAAHAAALAAAAEGAPDAVELAAAAAAAVAKLKKDKQRKRAEESKNKVPAQSA 609
Query: 516 LEATRRMLTKKRLSSKINYDVLEKLFDDS 544
EATR+MLTKK+LSSK+NYDVLEKLF+D+
Sbjct: 610 AEATRQMLTKKKLSSKVNYDVLEKLFEDN 638
>gi|255078514|ref|XP_002502837.1| predicted protein [Micromonas sp. RCC299]
gi|226518103|gb|ACO64095.1| predicted protein [Micromonas sp. RCC299]
Length = 636
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 219/527 (41%), Positives = 306/527 (58%), Gaps = 40/527 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA-SRERLMEKAFDDMRQ 80
CC +CGK+L+D+ FST+ TF K A G +Q+ GNFV E G S E+ + K ++ Q
Sbjct: 1 CCTQCGKILDDNVFSTDPTFSKTAGGATQVDGNFV----PESGVDSHEKTINKGKYEISQ 56
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+ + L I ++I + A R Y +AV RNFT+GRRT+QV A+CLY+ CRQ+S+P++LIDFS
Sbjct: 57 VADRLGIRPREDIANAAHRLYKLAVQRNFTRGRRTQQVAAACLYIICRQESRPYMLIDFS 116
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTAR 199
+ + NVY LGAV+LQLC++L + + K +DPS+F+H+F DRL G V +TA
Sbjct: 117 DVVQTNVYVLGAVFLQLCRLLRLEQHPLISKPIDPSLFIHRFADRLTLGRKMHAVANTAL 176
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259
++ASMKRDW+ TGR+PSG+CGAAL+V+AL HG + SK D+V +VH+ EATL KR+ EFE
Sbjct: 177 RLVASMKRDWMQTGRRPSGVCGAALWVAALLHGYERSKRDVVAVVHVGEATLRKRVTEFE 236
Query: 260 NTDSGSLTIEDFMARKKELHEGVAANLPNNGPKV---SGMNEVLCKHK--DTGKPFACGL 314
NT S L++E+F R K+ +E A L +G + G+ + C HK D FA G+
Sbjct: 237 NTPSAMLSVEEFDIRAKD-YEKEQAALAESGALLGAPGGITALTCIHKDHDGSTHFAHGM 295
Query: 315 CRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQS 374
CR CY E+ +S G GG DPPAFQ AE R +A + + ++ K S
Sbjct: 296 CRQCYLEYARVSGGARGGEDPPAFQAAEARRDREAQRALPAPQATLALPAPAAKKGKKMS 355
Query: 375 PEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEK 434
+ R + A + K G D + + FSD+DD E+D Y+H EE
Sbjct: 356 AKEAREAMEAIEREARAKA-----KVKGEDEDEDTDAEPETFSDVDDEEIDNYIHTAEEV 410
Query: 435 HYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKS 494
+++IW E+NR+YLE QAAKEAA AAA AL G++
Sbjct: 411 KLRRVIWSELNRDYLETQAAKEAAVAAAPPAL--------PGIEGDGGKGGKKRKKYT-- 460
Query: 495 RKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
+ PA TA EA ++ML+ K++SSKINYD L LF
Sbjct: 461 -------------HQVPADTAAEAAQQMLSSKKISSKINYDALNDLF 494
>gi|218196515|gb|EEC78942.1| hypothetical protein OsI_19387 [Oryza sativa Indica Group]
Length = 521
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 230/538 (42%), Positives = 309/538 (57%), Gaps = 93/538 (17%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQM 81
CC CGKVL+D + E TF K A GQ++L+G+ + +I+S S ER + K +++RQ+
Sbjct: 5 CCGLCGKVLDDQVYDGEPTFQKGADGQARLAGSILSSIESGNSVSHERTINKGREEIRQI 64
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
++L++ D I+ +A R+Y +AV +NFT+GRRT V A+CLY+ACRQ K +LLIDFS+
Sbjct: 65 VSSLHVAGGDTIISMAHRYYTLAVDKNFTRGRRTTHVAAACLYIACRQSKKAYLLIDFSD 124
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+L I +V+ + C I Q+ S F+ +L
Sbjct: 125 HLQI------SVFAKFCYSRNI--------QLSKSSSTPAFSYIVLQ------------- 157
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261
TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEATL KRLIEFENT
Sbjct: 158 ---------NTGRKPSGLCGAALYIAALSHGYDYTKADIVAVVHVCEATLTKRLIEFENT 208
Query: 262 DSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEE 321
DSGSLTIE+F+A+ E V P +G EVLCKHKD + FA GLC CY +
Sbjct: 209 DSGSLTIEEFLAKADE-QVLVTKISPKSG-------EVLCKHKDKAEHFAHGLCEKCYNK 260
Query: 322 FMTISEGLEGGADPPAFQVAERERMVKA------SAEENSSFE-----RESD------SP 364
FM +S GLEGG+DPPAFQ AE++R+ A +A + ++ E RESD +P
Sbjct: 261 FMKLSGGLEGGSDPPAFQRAEKQRLEAAKNAKGTAASKEAALESVCEARESDVENNITTP 320
Query: 365 FMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEV 424
+ + S P + T EGEG + K A +G ++ SDIDD EV
Sbjct: 321 PKNIIGDKHSTIPSVKVAGDSVATEDPEGEGKNDK---------ADEGPESLSDIDDAEV 371
Query: 425 DGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELA 484
DGYLHNEEE YKKIIWEEMN+EYLEEQAAK A AA
Sbjct: 372 DGYLHNEEETQYKKIIWEEMNKEYLEEQAAKAALAA-----------------------E 408
Query: 485 AAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 542
AA V + K K+++ + KN+ PAQT EAT+ ML +KRL SKIN + + KL++
Sbjct: 409 LAARGVVVEEGKRKRRRHNEDGKNATPAQTPAEATQNMLKRKRLGSKINDEAVNKLYN 466
>gi|302801496|ref|XP_002982504.1| hypothetical protein SELMODRAFT_421928 [Selaginella moellendorffii]
gi|300149603|gb|EFJ16257.1| hypothetical protein SELMODRAFT_421928 [Selaginella moellendorffii]
Length = 588
Score = 368 bits (944), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 231/588 (39%), Positives = 328/588 (55%), Gaps = 117/588 (19%)
Query: 1 MVWCSSCAR-HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MVWCS C + + H D +CC CG+VL+D+ FS+E TF K+A+GQSQ GN V+
Sbjct: 1 MVWCSYCGKDQIAEHN--DGFICCTGCGRVLDDNVFSSEPTFAKSASGQSQFVGNIVK-- 56
Query: 60 QSEYGA------------------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFY 101
QS+YG S +R ++K ++R + ++L++G D+IV A R Y
Sbjct: 57 QSQYGTYARIVDDGTGTVSGYQSNSHQRTLDKGRQEIRNIASSLSVGGGDDIVGSAHRIY 116
Query: 102 GIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL 161
+AV +NFTKGRRT QV A+CLY+ CR Y LGAV+LQLC +L
Sbjct: 117 VLAVEKNFTKGRRTSQVAAACLYIVCR-------------------YLLGAVFLQLCTLL 157
Query: 162 YIADESNVLKQVDPSIFLHKFTDRLL----PGGNKK----VCDTARDILASMKRDWITTG 213
+ V K VDPS+F+H+FTDRLL PG + K + +TA I+ASMK+DWI TG
Sbjct: 158 RLDQHPMVQKPVDPSLFIHRFTDRLLHRIAPGTSSKNQFAIANTALRIVASMKQDWIQTG 217
Query: 214 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 273
R+PSG+CGAAL +S HGL+ S +D+ +V++C+AT+ KRL+EF NT++GSLT E+F A
Sbjct: 218 RRPSGICGAALLLSTRIHGLECSTADVESVVYVCKATITKRLVEFSNTEAGSLTPEEFEA 277
Query: 274 ----RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTG-KPFACGLCRSCYEEFMTISEG 328
R+KE+ ++ NNG + E+LC+HKD+G + +A GLC++CY++F+ IS G
Sbjct: 278 KAKQREKEMLSVSQTDIVNNGV----IKEILCEHKDSGAQHYAHGLCKNCYDDFVKISGG 333
Query: 329 LEGGADPPAFQVA--ERERMVK---------ASAEENSSFERESDSPFMSRVDKVQSPEP 377
L+GG+ PPAFQ A ERER++K A ++E+ + SP + K + +
Sbjct: 334 LQGGSAPPAFQRAQKERERLLKNKKRKLTAEAISDEDEDLTCTNSSPVAEKAIKKKLEQE 393
Query: 378 ERV---PKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEK 434
E + T ++E + + VD D ++ SDIDD
Sbjct: 394 EHSYFDADDVTESCVTHETKAEKRYEDSVD------DEPESLSDIDD------------- 434
Query: 435 HYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKS 494
EQ AKEAA A ++ A + + A AAA V S
Sbjct: 435 ----------------EQEAKEAALKAQAESMAA--------VSTSGTAAEIAAATVVMS 470
Query: 495 RKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 542
RK ++ K A N PA++A EATR+ML KKRLSSK+NY VLEK+F+
Sbjct: 471 RKARKHKHGDTA-NCKPAESAAEATRQMLEKKRLSSKLNYSVLEKMFN 517
>gi|145353293|ref|XP_001420953.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357469|ref|XP_001422941.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581189|gb|ABO99246.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583185|gb|ABP01300.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 576
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 207/559 (37%), Positives = 304/559 (54%), Gaps = 86/559 (15%)
Query: 3 WCSSCARHVTGH-RPYDSQLCCDRCGKVLEDHN-FSTEATFVKNAAGQSQLSGNFVR--- 57
WC +C + V + CC CGK+L++ FS +ATFVKNA G S G++V
Sbjct: 5 WCETCGKRVAAETNEANGFTCCTTCGKILDERAAFSADATFVKNAQGASVPDGHYVPESG 64
Query: 58 ----TIQSEYGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV 105
I++ G S ER + + +++Q+ + L I +++V A R Y +AV
Sbjct: 65 VAHGVIRATRGGRLYGVQLDSHERTLYRGKLEIKQLADRLGIRPREDVVDAAHRLYKLAV 124
Query: 106 ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIAD 165
RNFT+GRR QV +C+Y+ CRQ+S+P++LIDF++ L NVY LG V+LQLC++L +
Sbjct: 125 QRNFTRGRRISQVAGACMYIICRQESRPYMLIDFADILQTNVYVLGGVFLQLCRLLRLEQ 184
Query: 166 ESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAAL 224
+ K +DPS+F+H+F D+L G V +TA ++ASMKRDW+ TGR+P+G+CGAAL
Sbjct: 185 HPLMQKPIDPSLFIHRFADKLNLGRRMHTVANTALRLVASMKRDWMQTGRRPNGICGAAL 244
Query: 225 YVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAA 284
+V+A HG SK D+V +VH+ E+TL KRL EFENT S +L+IE+F + + A
Sbjct: 245 WVAAQIHGFSPSKRDVVAVVHVGESTLKKRLSEFENTPSAALSIEEFDTQARTFEAEEEA 304
Query: 285 NLPNNGPKVSGMNEVLCKHKDTGK--PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAE 342
N S M+ + C HKD FA G+CR+CY +++ IS G GGADPPAF AE
Sbjct: 305 NKNTKSLASSPMSVLSCVHKDNENIPHFAHGMCRACYVDYVRISGGSVGGADPPAFMRAE 364
Query: 343 RERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPG 402
+R K+ + + +P + + + +G K
Sbjct: 365 AKR-------------------------KIDAKQKLLLPALSSGELGDEDADGLVAK--- 396
Query: 403 VDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAA 462
E ++ D SD+DD E+D Y+HNE E + ++++W EMN+EYLE QA KE AA+
Sbjct: 397 -----EDNEVIDTLSDVDDDEIDSYIHNENEVNLRRLVWSEMNKEYLEFQALKEQAASRT 451
Query: 463 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 522
A + ++ P+ L PA+T EA R++
Sbjct: 452 SAPTKKKHRKAPDTL---------------------------------PAETPAEAARQV 478
Query: 523 LTKKRLSSKINYDVLEKLF 541
L KK+ SSKINY+ LE LF
Sbjct: 479 LAKKKGSSKINYEALENLF 497
>gi|302772278|ref|XP_002969557.1| hypothetical protein SELMODRAFT_410325 [Selaginella moellendorffii]
gi|300163033|gb|EFJ29645.1| hypothetical protein SELMODRAFT_410325 [Selaginella moellendorffii]
Length = 507
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 174/366 (47%), Positives = 241/366 (65%), Gaps = 35/366 (9%)
Query: 1 MVWCSSCARHVTGHRP-YDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT- 58
MVWCS CA+ R + CC CG+VL+D+ +S+E TF K +AGQSQL GN +R+
Sbjct: 1 MVWCSYCAKDQIADRDDINGFTCCTGCGRVLDDNVYSSEPTFCKGSAGQSQLVGNIIRSG 60
Query: 59 ----IQSEYG------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
I S+ G AS E+ +E+ +++ + ++L+I D+ V A R Y +AV ++
Sbjct: 61 QYSRIGSDPGYSGFQSASHEKTLERGRNEIGDIADSLSISGRDDAVGAAHRLYVLAVEKS 120
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
FTKGRRT+QV A+CLY+ CRQ++KP+LLIDFS+ L +NV +L + +
Sbjct: 121 FTKGRRTQQVAAACLYIVCRQENKPYLLIDFSDSLQVNV------------LLRLEEHPI 168
Query: 169 VLKQVDPSIFLHKFTDRLLPGGN-------KKVCDTARDILASMKRDWITTGRKPSGLCG 221
+ K VDPS+F+H+FTDRLL N + +TA I+ASMKRDWI TGRKPSG+CG
Sbjct: 169 MAKPVDPSLFIHRFTDRLLGLSNGSFGRKHHAIANTALRIVASMKRDWIQTGRKPSGVCG 228
Query: 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEG 281
AAL+VSA HG + SKSD+V +VH+C TL KRL+EF NT+SGSLT E+F A+ KEL
Sbjct: 229 AALFVSAQIHGFECSKSDVVSVVHVCGDTLTKRLVEFGNTESGSLTPEEFEAKAKELE-- 286
Query: 282 VAANLPNNGPKVSGMNEVLCKHKDTGKP-FACGLCRSCYEEFMTISEGLEGGADPPAFQV 340
+ +P+ K + E+LC+HK+ G A GLCRSC++EFM +S GLEG ++PPAFQ
Sbjct: 287 LQEPVPHVNFK-GHLTEILCEHKELGASHHAHGLCRSCFDEFMKVSGGLEGESNPPAFQR 345
Query: 341 AERERM 346
AE++R
Sbjct: 346 AEKKRF 351
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 513 QTALEATRRMLTKKRLSSKINYDVLEKLFD 542
++A EA RRML K+L S++N+DVL+KLFD
Sbjct: 394 KSAAEAARRMLEAKKLGSRVNFDVLDKLFD 423
>gi|303283326|ref|XP_003060954.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457305|gb|EEH54604.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1016
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 166/377 (44%), Positives = 236/377 (62%), Gaps = 26/377 (6%)
Query: 1 MVWCSSCARHVTGHRPYDSQL-CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
+ WC++C V + CC +CGK+L+D+ FST+ TF K A G +Q+ GNFV
Sbjct: 8 LPWCTNCQEEVEAETNESNGFTCCTQCGKILDDNVFSTDPTFTKTATGATQVDGNFVNET 67
Query: 60 QSEYGASR---------------ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIA 104
G SR E+ + K +++Q+ + L I ++I A R Y +A
Sbjct: 68 GIGQGVSRGTRGGRLFGLQVDSHEKTINKGKHEIQQVADRLGIRPREDITGAAHRLYKLA 127
Query: 105 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164
V RNFT+GRRT+QV +CLY+ CRQ+S+P++LIDFS+ + NVY LGAV+LQLC++L +
Sbjct: 128 VQRNFTRGRRTQQVAGACLYIVCRQESRPYMLIDFSDVVQTNVYVLGAVFLQLCRLLRLE 187
Query: 165 DESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAA 223
+ K +DPS+F+H+F D+L G V +TA ++ASMKRDW+ TGR+PSG+CGAA
Sbjct: 188 QHPLISKPIDPSLFIHRFADKLNLGRRMHAVANTALRLVASMKRDWMQTGRRPSGVCGAA 247
Query: 224 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
L+V+AL HG + SK D+V +VH+ EATL KR+ EFENT S L+I++F AR K+L E
Sbjct: 248 LWVAALLHGYERSKRDVVAVVHVGEATLRKRVSEFENTPSAQLSIDEFDARAKDL-EKEQ 306
Query: 284 ANLPNNGPKV----SGMNEVLCKHKD--TGKPFACGLCRSCYEEFMTISEGLEGGADPPA 337
A L ++G + + + C HKD FA G+CR CY E+ +S G GG DPPA
Sbjct: 307 AQLGDSGATLLLGDASTKTMTCVHKDHEGAAHFAHGMCRMCYVEYARVSGGSRGGEDPPA 366
Query: 338 FQVAE--RERMVKASAE 352
FQ AE RE+ + A+A+
Sbjct: 367 FQAAEQRREKELNAAAK 383
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 23/127 (18%)
Query: 415 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 474
FSD+DD EV G++H EE +K+IW E+NR+YLE QAAKEA A+ P
Sbjct: 685 TFSDVDDDEVAGFIHTAEEVKLRKVIWSELNRDYLETQAAKEAIL--------AAAPKPP 736
Query: 475 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 534
G + A ++ PA TA EA ++ML+ K++SSKINY
Sbjct: 737 PGSEDADGKKKKQRKKYT---------------HATPADTAAEAAQQMLSSKKISSKINY 781
Query: 535 DVLEKLF 541
D L LF
Sbjct: 782 DALNDLF 788
>gi|308810665|ref|XP_003082641.1| transcription factor IIB (ISS) [Ostreococcus tauri]
gi|116061110|emb|CAL56498.1| transcription factor IIB (ISS) [Ostreococcus tauri]
Length = 728
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 160/361 (44%), Positives = 222/361 (61%), Gaps = 24/361 (6%)
Query: 4 CSSCARHVTGHRPYDSQL-CCDRCGKVLEDHN-FSTEATFVKNAAGQSQLSGNFVR---- 57
C CA+ V + CC +CGK+L + FS E TF KNA G S G FV
Sbjct: 2 CDGCAKRVAAETNESNGFTCCTQCGKILHERVVFSGETTFTKNAQGASVPDGMFVPENGI 61
Query: 58 ---TIQSEYGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA 106
I++ G S ER + + +++Q+ + L I +++V A R Y +AV
Sbjct: 62 AHGVIRASRGGRLYGVQLDSHERTLYRGKLEIKQVADRLAIRPREDVVDAAHRLYKLAVQ 121
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
RNFT+GRR QV +CLY+ CRQ+S+P++LIDF++ L NVY LGAV+LQLC++L +
Sbjct: 122 RNFTRGRRVSQVAGACLYIICRQESRPYMLIDFADVLQTNVYVLGAVFLQLCRLLRLEQH 181
Query: 167 SNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALY 225
+ K +DPS+F+H+F D+L G V +TA ++ASMKRDW+ TGR+P+G+CGAAL+
Sbjct: 182 PLMQKPIDPSLFIHRFADKLSLGRRMHTVANTALRLVASMKRDWMQTGRRPNGICGAALW 241
Query: 226 VSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF--MARKKELHEGVA 283
V+A HG SK D+V +VH+ EATL KRL EFENT S +L++E+F AR E+ E
Sbjct: 242 VAAHIHGFNPSKRDVVAVVHVGEATLKKRLSEFENTPSAALSVEEFDTQARTYEIEE--E 299
Query: 284 ANLPNNGPKVSGMNEVLCKHKDT-GKP-FACGLCRSCYEEFMTISEGLEGGADPPAFQVA 341
AN S M+ + C HKD+ P FA G+CRSCY +++ IS G GGADPPAF A
Sbjct: 300 ANRTLKSLPSSSMSVLSCVHKDSENTPHFAHGMCRSCYIDYVRISGGSMGGADPPAFMRA 359
Query: 342 E 342
+
Sbjct: 360 K 360
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 33/131 (25%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
D D SD+DD E+D Y+H+E E ++++W E+N+EYLE QA KE A
Sbjct: 556 DYIDTLSDVDDDEIDSYIHDENEVKLRRVVWAELNKEYLEGQALKEQTPA---------- 605
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 530
+ P K++K+ A PA+T EA + L+KK+ SS
Sbjct: 606 RTLPS--------------------TSKRKKKVAVVP---PAETPAEAVHQALSKKKGSS 642
Query: 531 KINYDVLEKLF 541
KINY+VLE LF
Sbjct: 643 KINYEVLENLF 653
>gi|384247443|gb|EIE20930.1| cyclin-like protein [Coccomyxa subellipsoidea C-169]
Length = 496
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/358 (42%), Positives = 211/358 (58%), Gaps = 20/358 (5%)
Query: 1 MVWCSSCARHV-TGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
M +C C + V + + CC CG VL++ FSTE TF K A G S G F+
Sbjct: 1 MAYCGHCKQEVEVENDDANGYQCCTTCGAVLDEGGFSTEVTFTKGAGGVSTADGQFLSDA 60
Query: 60 QSEYGASR--------------ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV 105
+ G +R E+ + K ++ Q+ + L I D+ V A R Y +A+
Sbjct: 61 AASRGLARISGGRGYGYQLDSHEKSLNKGRSEVTQLVDRLRIAPRDDTVEAASRLYKLAL 120
Query: 106 ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIAD 165
+RNFT+GRRT+ V A+CLY+ CRQ SKPF+LIDFS+ L +NV+ LGAV+L LC++L + +
Sbjct: 121 SRNFTRGRRTQLVAAACLYIVCRQDSKPFMLIDFSDALQVNVFTLGAVFLHLCKLLRLEE 180
Query: 166 ESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAAL 224
+ VDPS++LH+F +RL V +TA ++ASMKRDW+ TGR+PSG+CGAAL
Sbjct: 181 HPMFQRPVDPSLYLHRFANRLCVNDKFHAVTNTALRLVASMKRDWMQTGRRPSGICGAAL 240
Query: 225 YVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF--MARKKELHEGV 282
+++A HG++ SK D+V IVH+ EATL KR+ EF T SG LTIE+F R E
Sbjct: 241 FIAAHIHGVEKSKRDVVNIVHVGEATLAKRVKEFALTTSGDLTIEEFEDEGRALEAQHRK 300
Query: 283 AANLPNNGPKVSGMNEVLCKHKDTG--KPFACGLCRSCYEEFMTISEGLEGGADPPAF 338
L G + C+H G + FA G+C+ CYEEF+ ++ G GADPPAF
Sbjct: 301 ELQLNTIGAPAPAHTKGGCQHLTAGAAQHFAHGMCKVCYEEFLEVTGGTSAGADPPAF 358
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 56/118 (47%), Gaps = 37/118 (31%)
Query: 427 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 486
YLH EE K++IW E+NRE+L+ Q+AK AA +A A PE +
Sbjct: 411 YLHTPEEAKLKELIWTELNREFLDCQSAKAAALESAAAKAR------PEDMLE------- 457
Query: 487 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 544
PA+T EATRRML K+LSSKINY+ L LF ++
Sbjct: 458 ------------------------PAETPEEATRRMLDAKKLSSKINYNALANLFSET 491
>gi|357117994|ref|XP_003560745.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like
[Brachypodium distachyon]
Length = 516
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/348 (43%), Positives = 207/348 (59%), Gaps = 58/348 (16%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MV+C+ CA + + P +CC CGKVL+ +S E TF+ GQS++ G +R+I
Sbjct: 1 MVYCTHCADYCPYIKDPDKGYICCGTCGKVLDQDIYSDEPTFISYGPGQSRVEGTPLRSI 60
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+ S ER + K D++ Q+ +L++G D I+ +A + Y +AV NFT+GRRT QV
Sbjct: 61 EIGTSLSHERTLMKGRDEIWQIVTSLHVGGGDTIIDMAHKIYTLAVDHNFTRGRRTTQVA 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY+A RQ K +LLIDFS+YL I+VY LGAV+LQLCQVL +A+ V K +DPS+F+
Sbjct: 121 AACLYIAVRQSKKAYLLIDFSDYLKISVYVLGAVFLQLCQVLLLAEHPIVQKLIDPSLFI 180
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
H+FT+R+ P P+ ++KSD
Sbjct: 181 HRFTERIQP---------------------------PN-----------------YTKSD 196
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEV 299
I +VHICEATL KRLIEFENTDSGSL IEDF+A+ E P++ EV
Sbjct: 197 IFAVVHICEATLTKRLIEFENTDSGSLMIEDFLAKADE-------EQPSHKS-----GEV 244
Query: 300 LCKHKDT-GKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM 346
LCKHKD + A GLC CY +F+ +S GLEGGADPPAFQ AE++R+
Sbjct: 245 LCKHKDKDAEHLAHGLCEKCYNKFIKMSGGLEGGADPPAFQQAEKQRL 292
>gi|412991514|emb|CCO16359.1| predicted protein [Bathycoccus prasinos]
Length = 846
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 218/366 (59%), Gaps = 23/366 (6%)
Query: 3 WCSSCARHVTGH-RPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
+CS C V + CC CGK+L+D FST+ TF K + G Q+ GNFV
Sbjct: 5 YCSQCKSDVVAEVNDANGFTCCTVCGKILDDSVFSTDPTFSKTSGGAIQVDGNFVPESGI 64
Query: 62 EYGASR---------------ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA 106
+ R E+ + K ++ Q+ + L + ++I A R Y IAV+
Sbjct: 65 AHSVGRPTRGGRVFGLQIDSHEKTVNKGKQEINQIADRLAMKPREDITTSAHRLYKIAVS 124
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
RNFT+GRRT QV +CLY+ CRQ+++P++LIDFS+ L NVY LG V+LQLC+++ +
Sbjct: 125 RNFTRGRRTAQVAGACLYVVCRQENRPYMLIDFSDVLQTNVYVLGGVFLQLCRLMRLEQH 184
Query: 167 SNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALY 225
+ + +DPS+F+H+F D++ G V +TA ++ASMKRDW+ TGR+P+G+CGAAL+
Sbjct: 185 PLMQRPIDPSLFIHRFADKMNLGKRVHSVSNTALRLVASMKRDWMQTGRRPAGICGAALW 244
Query: 226 VSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR-KKELHEGVAA 284
V++ HG SKSD+V IVHI E TL KR+ EF +T + L++E+F A+ +K ++
Sbjct: 245 VASHVHGFDRSKSDVVSIVHIGEQTLKKRITEFSSTPAALLSVEEFDAQAQKYENDDFIG 304
Query: 285 NLPNNGPKVSGMNEVLCKHKD---TGKPFACGLCRSCYEEFMTISEG--LEGGADPPAFQ 339
+ SG + CKH+D + F G+CR+CY +++ +S G GG DPPAF
Sbjct: 305 SKEQQDLICSGSTTLTCKHRDDDNMPEHFQHGMCRACYIDYVKVSGGTTFLGGMDPPAFT 364
Query: 340 VAERER 345
A+++R
Sbjct: 365 AAQKKR 370
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 25/143 (17%)
Query: 402 GVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAA 460
GVD T + + D SDI+D +++ Y++N+E+ + K++IW EMN++YLE QAAKEAA+
Sbjct: 620 GVDTPTNDEEEMRDVCSDIEDEDINEYMNNQEQVNLKRVIWSEMNKDYLESQAAKEAASK 679
Query: 461 AAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 520
A AA+E +KE++ +RA A A+ A
Sbjct: 680 DA----------------AARESNQPPRRKYNTKKKEEKYQRAENA--------AVAAQT 715
Query: 521 RMLTKKRLSSKINYDVLEKLFDD 543
++ K+ +SSKINY+ L+ LFDD
Sbjct: 716 VLIKKRGVSSKINYEALQNLFDD 738
>gi|357119379|ref|XP_003561419.1| PREDICTED: uncharacterized protein LOC100840180 [Brachypodium
distachyon]
Length = 721
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 182/391 (46%), Positives = 236/391 (60%), Gaps = 44/391 (11%)
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGA 222
+ DE V ++ ++ L + + LL + V DTA I+ASMKRDW+ TGRKPSGLCGA
Sbjct: 306 LTDERTVETPMELNVHL-RASVGLLGKRDNAVSDTALRIVASMKRDWMQTGRKPSGLCGA 364
Query: 223 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGV 282
ALY++AL+HG ++KSDIV +VHICEATL KRLIEFENTDSGSLTIED +A+ E
Sbjct: 365 ALYIAALSHGYNYTKSDIVAVVHICEATLTKRLIEFENTDSGSLTIEDVLAKADE----- 419
Query: 283 AANLPNNGP-KVSGMNEVLCKHKDTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQV 340
P + P + SG EVLCKHKD + FA GLC CY +F+ +S GLEGGADPPAFQ
Sbjct: 420 --EQPVSKPSRKSG--EVLCKHKDKDIEHFAHGLCEKCYNKFIKMSGGLEGGADPPAFQR 475
Query: 341 AERERMVKASAEENSSFER-----ESDSPFMSR--VDKVQSPEPERV-PKNCTTQTASNE 392
AER+R+ A E ++ + ES+ + D + SP+ + K+ T + N
Sbjct: 476 AERQRLEAAKKSEEAAALKEAALGESNCEIQNSDVEDNIISPKKGAIGDKSLTIPSEQNA 535
Query: 393 GEGDHTKTPGVDATTEASDGS-DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEE 451
+ +K P V D ++FSDIDD EVDGYLHNEEE HYKKIIWEEMN+EY+EE
Sbjct: 536 NDNIASKDPEVGGENSKPDADPESFSDIDDVEVDGYLHNEEETHYKKIIWEEMNKEYIEE 595
Query: 452 QAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGP 511
QAAKEA AA A G+ Q +K+++R + KN P
Sbjct: 596 QAAKEALAAELAAR--------GVGMGGGQ---------------QKKRRRNEDTKNLSP 632
Query: 512 AQTALEATRRMLTKKRLSSKINYDVLEKLFD 542
A+T EAT ML +K L SKIN + + L++
Sbjct: 633 AETPAEATYNMLKRKGLGSKINVEAVGGLYN 663
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
M +C+ CA + + P +CC CGKVL+ + TE TFVK+ GQSQ +GN + +I
Sbjct: 1 MFYCTHCADYCPYIKDPDKGYICCGTCGKVLDQDIYDTEPTFVKDGLGQSQRAGNVISSI 60
Query: 60 QSEYGASRERLMEKAF 75
+S S ER + K
Sbjct: 61 ESGSSISHERTLMKGM 76
>gi|307107018|gb|EFN55262.1| hypothetical protein CHLNCDRAFT_57908 [Chlorella variabilis]
Length = 861
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 150/370 (40%), Positives = 213/370 (57%), Gaps = 39/370 (10%)
Query: 1 MVWCSSCARHVTGHRPYDSQL-------CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSG 53
MV+C+ CA V D ++ CC +CG+VLED FS + TF K+A G+S + G
Sbjct: 1 MVYCNYCACEV------DVEVDDANGFSCCVQCGRVLEDTAFSADITFQKDAGGESTVVG 54
Query: 54 NFV------RTIQSEYGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
FV R I +G S E+ ++ ++ + + L++ +E + A R
Sbjct: 55 QFVNESGVARGIGRIHGGRVYAYQADSHEKAQQRGRHEIAHLVDQLSVRPREESIEAAHR 114
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y +A+ R FT+GRRT QV A+C+YL CRQ SKPFLLIDFS+ L INV+ LGAV+LQL +
Sbjct: 115 LYKLALQRGFTRGRRTNQVAAACVYLVCRQDSKPFLLIDFSDALQINVFTLGAVFLQLAK 174
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSG 218
+L + + K VDPS+++H+F DRL G V +TA ++ASMKRDWI TGR+PSG
Sbjct: 175 LLRLTEHPMFAKPVDPSLYIHRFADRLDFGRQMHAVANTALRLVASMKRDWIQTGRRPSG 234
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKEL 278
+CGAA+Y++A HG + S D+V +VHI E TL KRL EF +T + + T ++F R K++
Sbjct: 235 ICGAAIYIAAHIHGFERSVRDVVAVVHIGEHTLSKRLYEFSSTSASAYTADEFEERVKQI 294
Query: 279 HEGVAANLPNNGP--KVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPP 336
L P V + C+H +P A G+C S S G+ GA+PP
Sbjct: 295 EADETERLEAAQPVEPVGLLESTGCEHLREWRP-AAGVCDS--------SGGVYNGANPP 345
Query: 337 AFQVAERERM 346
AF R+ M
Sbjct: 346 AFDRNRRKEM 355
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 408 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 467
E G D SDI D ++D YL ++ E K+ IW MNR++LE+QAAK AA AA+ A+
Sbjct: 575 EEEGGDDLLSDIGDSDIDMYLADDAEVKCKEEIWNMMNRDWLEKQAAKRAAQEAAERAVA 634
Query: 468 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 527
A V K K R A + PA+TA EA RML ++
Sbjct: 635 EQQAAQEAAEAAGVAYKRGRGRPVGS--KTKNHHRGAGMADLPPAETAQEAAMRMLDHRK 692
Query: 528 LSSKINYDVLEKLF 541
LS+KINY L LF
Sbjct: 693 LSNKINYSALADLF 706
>gi|413948298|gb|AFW80947.1| hypothetical protein ZEAMMB73_313717 [Zea mays]
Length = 374
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 165/356 (46%), Positives = 207/356 (58%), Gaps = 59/356 (16%)
Query: 205 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSG 264
MKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEATL KRLIEFENTDSG
Sbjct: 1 MKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIEFENTDSG 60
Query: 265 SLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKP---FACGLCRSCYEE 321
SLTIE+F+A E +E A++ PK SG E+LCKHK GK FA GLC C+ +
Sbjct: 61 SLTIEEFLATADEYNE---ASVSKYSPK-SG--EILCKHK--GKDFEHFAHGLCEKCFNK 112
Query: 322 FMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVP 381
F +S GLEGGA+PPAFQ AE +R+ A E ++ +E+ + Q+ E E
Sbjct: 113 FTKLSGGLEGGANPPAFQRAENKRLEAAKRAEEAAAVKEAAL--EESLCDTQNSEIE--- 167
Query: 382 KNCTTQTASNEGEGDHTKTPGVDATTEAS-------DGSDN---------FSDIDDFEVD 425
+T T GD + T G S +G +N SDIDD EVD
Sbjct: 168 ---STTTPKKALSGDKSSTIGSGGLINDSVPPKDPEEGGENCEGNADPESLSDIDDVEVD 224
Query: 426 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 485
YLHNEEE YKKIIWEEMN+EYLEEQAAKEA A A
Sbjct: 225 WYLHNEEETQYKKIIWEEMNKEYLEEQAAKEALA------------------------AE 260
Query: 486 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
AA + +K++KR + K+S PA T EAT ML +K L SKIN + +L+
Sbjct: 261 LAARGIVVEEGKKKRKRNEDTKSSTPADTPAEATYNMLKRKGLGSKINEGAVGELY 316
>gi|297592169|gb|ADI46953.1| BFR1m [Volvox carteri f. nagariensis]
Length = 826
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/383 (33%), Positives = 199/383 (51%), Gaps = 57/383 (14%)
Query: 1 MVWCSSCARHVTGHRPYDSQL-CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MVWCS C V + CC +CG+VLED FST+ F K A G +L G V
Sbjct: 1 MVWCSQCQAEVELEADEANGFSCCVQCGRVLEDTAFSTDVMFTKGADGAGELVGQLVGAN 60
Query: 60 QSEYGASR-------------ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA 106
+G SR E + + ++ + AL I S E + R Y +A+
Sbjct: 61 GDAHGVSRYSGGRLWASGGGHEGALSRGRHEIVALVEALRISPSSEAIEAGHRLYRLALQ 120
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
R FT+GRR QV A CLY+ CR + +P++LIDFS++L++NVY LGAV+L + ++L + +
Sbjct: 121 RGFTRGRRVNQVAAVCLYIFCRLERRPYMLIDFSDHLSVNVYGLGAVFLDMLRLLRLEEH 180
Query: 167 SNVLKQVDPSIFLHKFTDRL-LPGG--NKKVCDTARDILASMKRDWITTGRKPSGLCGAA 223
+ K +DPS+F+++F DRL LP KV TA ++ SMKRDW+ TGR+P+G+CGAA
Sbjct: 181 ATFTKPIDPSLFMNRFVDRLRLPTQELRTKVGYTATRLVQSMKRDWMLTGRRPNGICGAA 240
Query: 224 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK------- 276
L+++A HG++ +K DI+ IVH+ T+ +R++E T LT+++ R K
Sbjct: 241 LFLAAHIHGVEKTKMDIIAIVHVGWGTVERRVMELAETGGAELTLKEIEERDKASDLERE 300
Query: 277 ----ELHEGVAANLPNNGPKVS------------------GMNEVL----------CKHK 304
E + PN +++ G V+ C+H
Sbjct: 301 KMLLEYERAAIEDAPNRQRQLTWPASSSDATVASGSAEGDGSAPVVMMQPDATGRCCEHV 360
Query: 305 DTGKP-FACGLCRSCYEEFMTIS 326
G P A G+CR C +E++ ++
Sbjct: 361 RAGSPLLAHGMCRECLQEYLQVT 383
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 29/148 (19%)
Query: 396 DHTKTPGVDATTEASDG--SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQA 453
D G D + DG SD+ SDI D EVDGYL EE ++ +W EMNR+++E Q
Sbjct: 583 DAAVAAGRDVVDKGGDGHSSDHLSDIHDDEVDGYLATNEEASVRRQLWLEMNRDWVELQE 642
Query: 454 AKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ 513
AK+AA AA A +A+ +++ +K+A A+
Sbjct: 643 AKKAAEAAED-----------------------KRAGLARPKRKYLRKKA----EVPAAE 675
Query: 514 TALEATRRMLTKKRLSSKINYDVLEKLF 541
A ATR +L K+LS+KINY L LF
Sbjct: 676 DAAGATRNLLASKKLSNKINYGALADLF 703
>gi|403373133|gb|EJY86480.1| hypothetical protein OXYTRI_13619 [Oxytricha trifallax]
Length = 521
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 239/468 (51%), Gaps = 30/468 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAA-----GQSQLSGNFVRT 58
C+ C T + C CG VLE + +E F + A Q +
Sbjct: 3 CNKCGSTQTEYNAPQGIYACLGCGNVLESNTIVSELQFANSMATGFFLNQRNGQAALYQG 62
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
++ + SR + K + + + A +G S IV +RF+ +A +NF +GR T+ V
Sbjct: 63 KRALFSDSRALRLSKGYKVVEGI--ASQLGMSQYIVEAGQRFFKLAYEKNFIQGRNTKHV 120
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A CLY+ACR++ P LLIDFS+ L NVY LG+VYL+L Q L++ + +DPSIF
Sbjct: 121 AAVCLYIACRKEKTPHLLIDFSDVLQTNVYILGSVYLKLVQRLFLE-----VPLIDPSIF 175
Query: 179 LHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+H+F +L G + +V TA +L +MKR WITTGR+P+GLCGAA+ ++A H K +
Sbjct: 176 IHRFCSKLEFEGKSHQVALTALRLLQTMKRAWITTGRRPNGLCGAAILIAARYHNYKRNI 235
Query: 238 SDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPN----NGPKV 293
IV++VH+CE T+ KRL EF+NT + LT ++F + ++ + +A N NG
Sbjct: 236 GQIVRVVHVCEETIRKRLDEFKNTRTAQLTRDEFQSIEQGGRQSSSATNTNEQYQNGTNG 295
Query: 294 SGMN--EVLCKH---KDTGKP-FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMV 347
MN + H ++ P F LC+ E + E L + AFQ+ ER++
Sbjct: 296 QLMNIEKSPSNHSVEENMDPPSFTRNLCKKKLEITEDMDE-LHKMLEEKAFQI--EERLM 352
Query: 348 KASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGE---GDHTKTPGVD 404
K + N S++ E P ++ + + +N N+ + D +
Sbjct: 353 KYEGQRN-SYQEEVKQPMTPPINDMDLYQQIDTSQNMLVPYQFNQPQIQIQDTNRLQMAL 411
Query: 405 ATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQ 452
E++DG + SDIDD E+D + EEE+ K I+W +NR+++ EQ
Sbjct: 412 KQFESNDGVETLSDIDDAEIDQLILTEEERKLKTILWNNLNRDWILEQ 459
>gi|297592086|gb|ADI46871.1| BFR1f [Volvox carteri f. nagariensis]
Length = 835
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/396 (33%), Positives = 202/396 (51%), Gaps = 68/396 (17%)
Query: 1 MVWCSSCARHVTGHRPYDSQL-CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
M+WCS C V + CC +CG+VLED FS++ F K A G +L G V
Sbjct: 1 MIWCSQCQAEVELEADEANGFSCCVQCGRVLEDTAFSSDVMFTKGADGAGELVGQLVGAN 60
Query: 60 QSEYGASR-------------ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA 106
+G SR E + + ++ + AL I S E + R Y +A+
Sbjct: 61 GDAHGVSRFSGGRLWASGGGHEGALSRGRHEIVALVEALRISPSSEAIEAGHRLYRLALQ 120
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
R FT+GRR QV A CLY+ CR + +P++LIDFS++L++NVY LGAV+L + ++L + +
Sbjct: 121 RGFTRGRRVNQVAAVCLYIFCRLERRPYMLIDFSDHLSVNVYGLGAVFLDMLRLLRLEEH 180
Query: 167 SNVLKQVDPSIFLHKFTDRL-LPGG--NKKVCDTARDILASMKRDWITTGRKPSGLCGAA 223
+ K +DPS+F+++F DRL LP KV TA ++ SMKRDW+ TGR+P+G+CGAA
Sbjct: 181 ATFTKPIDPSLFMNRFVDRLRLPTQELRTKVGYTATRLVQSMKRDWMLTGRRPNGICGAA 240
Query: 224 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK------- 276
L+++A HG++ +K DI+ IVH+ T+ +R++E T LT+++ R K
Sbjct: 241 LFLAAHIHGVEKTKMDIIAIVHVGWGTVERRVMELAETGGAELTLKEIEERDKASDLERV 300
Query: 277 -----------ELHEGVAANLPNNGPKVS------------------GMNEVL------- 300
E + + PN +++ G V+
Sbjct: 301 WNDGTNEKMLLEYERAASEDAPNRQRQLTWPASSSDATVASGSAEGDGSAPVVMIQPDAA 360
Query: 301 ---CKHKDTGKP-FACGLCRSCYEEF----MTISEG 328
C+H G P A G+CR C +E+ MT+ EG
Sbjct: 361 GRCCEHVRAGSPLLAHGMCRECLQEYLQVTMTVQEG 396
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 29/148 (19%)
Query: 396 DHTKTPGVDATTEASDG--SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQA 453
D G D + DG SD+ SDI D EVDGYL EE ++ +W EMNR+++E Q
Sbjct: 592 DAAVAAGRDVVDKGGDGHSSDHLSDIHDDEVDGYLATNEEASVRRQLWLEMNRDWVELQE 651
Query: 454 AKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ 513
AK+AA AA A +A+ +++ +K+A A+
Sbjct: 652 AKKAAEAAED-----------------------KRAGLARPKRKYLRKKA----EVPAAE 684
Query: 514 TALEATRRMLTKKRLSSKINYDVLEKLF 541
A ATR +L K+LS+KINY L LF
Sbjct: 685 DAAGATRNLLASKKLSNKINYGALADLF 712
>gi|224059412|ref|XP_002299842.1| predicted protein [Populus trichocarpa]
gi|222847100|gb|EEE84647.1| predicted protein [Populus trichocarpa]
Length = 264
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 103/164 (62%), Positives = 132/164 (80%)
Query: 105 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164
V RNFTKGRRT+QVQA+CLY+ACR+ KP+LLIDFSNYL IN+Y LGAV+LQLC+VL +
Sbjct: 1 VERNFTKGRRTDQVQAACLYIACRENRKPYLLIDFSNYLQINIYVLGAVFLQLCKVLNLT 60
Query: 165 DESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAAL 224
+ + K +DPSIF+HK+T L G N+++ D A I+ASM W+ TGR+PS L GAAL
Sbjct: 61 EHAICQKLLDPSIFIHKYTASLSGGKNREISDDALTIIASMNHHWMQTGRRPSALWGAAL 120
Query: 225 YVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 268
Y+SA++HGL SKSDI+++VH+C TL KRLIEFENT+SGSLT+
Sbjct: 121 YISAISHGLNCSKSDILRLVHVCGKTLSKRLIEFENTESGSLTL 164
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 59/76 (77%)
Query: 451 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSG 510
EQ AKEAA A K A E ++KNCPE LQAA++L AA A +AKS+KE QQKRAAEA+NS
Sbjct: 173 EQEAKEAATATHKEAWEENFKNCPEDLQAARKLDAAVKADLAKSKKEMQQKRAAEARNSV 232
Query: 511 PAQTALEATRRMLTKK 526
PA++A EA RMLTKK
Sbjct: 233 PAKSAAEAVHRMLTKK 248
>gi|4262235|gb|AAD14528.1| putative transcription factor [Arabidopsis thaliana]
Length = 257
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 133/165 (80%), Gaps = 3/165 (1%)
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
+NFTKGRR E VQ+SCLYLACR L IDFS+YL ++VYELG+VYLQLC++LY+
Sbjct: 3 QNFTKGRRAELVQSSCLYLACRDMKISLLFIDFSSYLRVSVYELGSVYLQLCEMLYLVQN 62
Query: 167 SNVLKQVDPSIFLHKFTDRLLPGGNKK---VCDTARDILASMKRDWITTGRKPSGLCGAA 223
N + VDPSIF+ +FT+ LL G + K V +TA++I++SMKRDWI TGRKPSG+CGAA
Sbjct: 63 KNYEELVDPSIFIPRFTNSLLKGAHAKAKDVANTAKNIISSMKRDWIQTGRKPSGICGAA 122
Query: 224 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 268
+Y++AL+HG+ +S++DI K+VH+CEAT+ KRL EF NT++GSLT+
Sbjct: 123 IYMAALSHGIMYSRADIAKVVHMCEATITKRLNEFANTEAGSLTL 167
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 18/91 (19%)
Query: 439 IIWEEMNREY---LEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSR 495
+I E+ RE+ LE++ +E AA NCPE A+ L A+ AAVA SR
Sbjct: 175 LISEQRKREWKKQLEKKTREELAA------------NCPED---ARNLVEASKAAVANSR 219
Query: 496 KEKQQKRAAEAKNSGPAQTALEATRRMLTKK 526
KEK++KRA EAKN+ P+ TA EA R L +K
Sbjct: 220 KEKRRKRAEEAKNAPPSATATEAVCRTLERK 250
>gi|70608137|ref|NP_082469.2| transcription factor IIIB 90 kDa subunit [Mus musculus]
gi|148686622|gb|EDL18569.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae) [Mus musculus]
Length = 676
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 171/569 (30%), Positives = 264/569 (46%), Gaps = 99/569 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+N+ G S G FV T+ + SR +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + + L + + + A F+ +AV+++ T+GR+ V A+CLYL CR
Sbjct: 85 TLQNGRRHIHHLGSQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE
Sbjct: 198 EKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCE 257
Query: 249 ATLMKRLIEFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNN 289
+TL KRL EFE+T + LTI++FM R K+L + ++ L
Sbjct: 258 STLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEV 317
Query: 290 GPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKA 349
++S + + + +P A G + ++ G + + P + E E + A
Sbjct: 318 EGEISSYQDAIEIELENSRPKAKGALANLSKD----GSGEDATSSPRCEEDTEDEELEAA 373
Query: 350 SAEENSSFERE-----------SDSPFMSR---VDKVQSPEPERVPKNCTTQTASNEGEG 395
++ N F RE D SR ++ + P P TA++ G
Sbjct: 374 ASHMNKDFYRELLGDDDGSEAAGDPDGGSRPLALESLLGPLP----------TAASLGIS 423
Query: 396 DHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEE 451
D + +P D + DG + S IDD E+D Y+ NE E K +W N EYL E
Sbjct: 424 DSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLRE 483
Query: 452 QAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGP 511
Q KEA A K EL KE + K++ + +
Sbjct: 484 QKEKEARIAKEK------------------ELGIY---------KEHKPKKSCKRREPIL 516
Query: 512 AQTALEATRRMLTKKRLSSKINYDVLEKL 540
A TA EA +ML +K++SSKINY VL L
Sbjct: 517 ASTAGEAIEKMLEQKKISSKINYSVLRDL 545
>gi|71153596|sp|Q8CFK2.1|TF3B_MOUSE RecName: Full=Transcription factor IIIB 90 kDa subunit;
Short=TFIIIB90; Short=mTFIIIB90; AltName: Full=B-related
factor 1; Short=BRF-1
gi|23512360|gb|AAH37224.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae) [Mus musculus]
Length = 676
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 171/569 (30%), Positives = 264/569 (46%), Gaps = 99/569 (17%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+N+ G S G FV T+ + SR +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + + L + + + A F+ +AV+++ T+GR+ V A+CLYL CR
Sbjct: 85 TLQNGRRHIHHLGSQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE
Sbjct: 198 EKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCE 257
Query: 249 ATLMKRLIEFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNN 289
+TL KRL EFE+T + LTI++FM R K+L + ++ L
Sbjct: 258 STLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEV 317
Query: 290 GPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKA 349
++S + + + +P A G + ++ G + + P + E E + A
Sbjct: 318 EGEISSYQDAIEIELENSRPKAKGALANLSKD----GSGEDATSSPRCEEDTEDEELEAA 373
Query: 350 SAEENSSFERE-----------SDSPFMSR---VDKVQSPEPERVPKNCTTQTASNEGEG 395
++ N F RE D SR ++ + P P TA++ G
Sbjct: 374 ASHMNKDFYRELLGDDDGSEAAGDPDGGSRPLALESLLGPLP----------TAASLGIS 423
Query: 396 DHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEE 451
D + +P D + DG + S IDD E+D Y+ NE E K +W N EYL E
Sbjct: 424 DSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLRE 483
Query: 452 QAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGP 511
Q KEA A K EL KE + K++ + +
Sbjct: 484 QKEKEARIAKEK------------------ELGIY---------KEHKPKKSCKRREPIL 516
Query: 512 AQTALEATRRMLTKKRLSSKINYDVLEKL 540
A TA EA +ML +K++SSKINY VL L
Sbjct: 517 ASTAGEAIEKMLEQKKISSKINYSVLRDL 545
>gi|41054023|ref|NP_956192.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIBa [Danio rerio]
gi|28422474|gb|AAH46877.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Danio rerio]
gi|182889790|gb|AAI65640.1| Brf1 protein [Danio rerio]
Length = 661
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 181/561 (32%), Positives = 266/561 (47%), Gaps = 95/561 (16%)
Query: 23 CDRCGKVLEDHNFSTEATFVKN------AAGQ----------SQLSGNFVRTIQSEYGAS 66
C CG VLED+ +E TFV++ A GQ L GNF ++ E S
Sbjct: 23 CMGCGSVLEDNIIVSEVTFVESGGGGSSAVGQFVAGDASGNVPSLGGNFQTSVGRE---S 79
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R ++ A + + + L + + + A FY +A++++ TKGR++ V A+CLYL
Sbjct: 80 RAATLQNAKRQINHLGHQLQMNQ--HCLDTAFNFYKMALSKHLTKGRKSTHVIAACLYLV 137
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F +L
Sbjct: 138 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLVLARELCINAPA-----IDPCLYIPRFA-QL 191
Query: 187 LPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G K +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V
Sbjct: 192 LEFGEKSHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHEFRRTIKEVISVV 251
Query: 245 HICEATLMKRLIEFENTDSGSLTIEDFMARKKELHE-----GVAANLPNN---------G 290
+CEATL KRL EFE+T + LTIE+FM K +L + AA L
Sbjct: 252 KVCEATLRKRLYEFEDTPTSELTIEEFM--KTDLEQECDPPSFAAGLRKQKLKQIEQELA 309
Query: 291 PKVSGMNEVLCKHKD-------TGKPFACGLCRSCYEE----FMTISEGLEGGADPPAFQ 339
KV + +C ++D + +P A G+ SC E + S L+G D
Sbjct: 310 KKVDDIEGEICGYQDEIEVELESCRPKARGIYASCSREDDVVSLASSSHLDGEDD----- 364
Query: 340 VAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTK 399
E AS + E+E D RV + P + T + E
Sbjct: 365 ----ELRAAASHLYGENEEQEQDG---ERVSLTKRPSLSLLLGALPTSASLGLSESITKM 417
Query: 400 TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 459
+ EA G + S ID+ E+D Y+ N++E K +W N +YL+EQ KE
Sbjct: 418 GEEKENDVEAEGGELDLSGIDEDEIDRYILNDKEVKVKTELWMIQNADYLKEQKEKEERI 477
Query: 460 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 519
A K E +YK RK ++ R E N A TA EA
Sbjct: 478 AKEKE--EGTYKE----------------------RKPRKSTRRREPIN---ANTADEAI 510
Query: 520 RRMLTKKRLSSKINYDVLEKL 540
+ML +KR+S+KINYDVL+ L
Sbjct: 511 EKMLEQKRISTKINYDVLKDL 531
>gi|189238877|ref|XP_973702.2| PREDICTED: similar to transcription factor IIIB 90 kDa subunit
(TFIIIB90) [Tribolium castaneum]
Length = 617
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 181/560 (32%), Positives = 264/560 (47%), Gaps = 77/560 (13%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----RTI 59
C SC P C CG VLE + E F + A G + G FV +
Sbjct: 7 CKSCGSSDIEVDPARGDAVCTNCGSVLEVNIIVAEVQFEEGAHGTNSAIGQFVSADSKGG 66
Query: 60 QSEYGAS---------RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
+++GAS RE + KA + + Q+ N L + + + A F+ +A+ RN T
Sbjct: 67 ATKFGASFHVGAGVESREMTLRKARNGITQLCNQLQLNQ--HCIDTACNFFKMALNRNLT 124
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
KGR+ V A+C+YL CR + LLID S+ L I YELG YL+L Q L I +
Sbjct: 125 KGRKNTHVHAACVYLTCRTEGTAHLLIDISDVLQICCYELGRTYLKLSQALSIN-----I 179
Query: 171 KQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDP +++ +F +L G ++V +TA ++ MKRD I +GR+PSGLCGAAL ++A
Sbjct: 180 PAVDPCLYILRFAAKLEFGSKTQQVANTALRLVQRMKRDSIHSGRRPSGLCGAALLIAAR 239
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNN 289
H S SDIVKIV + E+TL KRLIEF +T S +LT+E+FM V +
Sbjct: 240 LHEFGRSASDIVKIVKVHESTLRKRLIEFGDTPSSALTLEEFMT--------VDLEEEQD 291
Query: 290 GPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISE-----GLEGGADPPAFQVAERE 344
P + KD + L R EE +I+E ++ D ++E
Sbjct: 292 PPSFKA-----ARKKDKER-----LQRLMEEEAESITELQQEIEMQLNRDAKMKSRKKKE 341
Query: 345 RMVKASAEENSSFERESDSPFMSRV---DKVQSPEPERVP-KNCTTQTASNEGEGDHTKT 400
R + +E + F RES ++++ + ++ PE + P K AS T
Sbjct: 342 RDTE-EIQETNRFIRESTMGTINQIIQEEAIEDPEIAKEPVKELGPDIASMGLASSLEDT 400
Query: 401 PGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAA 460
+ D F DIDD E+D Y+ +E E K IW + N +LEEQ K
Sbjct: 401 SNAVQPPQPLDVDMTFDDIDDEELDSYIMSEHESQNKNAIWLKRNAAFLEEQKIK----- 455
Query: 461 AAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 520
E LQ +E + + EK+++R K GP +A EA
Sbjct: 456 -------------AEKLQKERE----------EGKPEKKKRRNVRRKPIGPTNSAGEAIE 492
Query: 521 RMLTKKRLSSKINYDVLEKL 540
++L +K++SSKINYDVL+ L
Sbjct: 493 KILQEKKISSKINYDVLKSL 512
>gi|196016326|ref|XP_002118016.1| hypothetical protein TRIADDRAFT_62066 [Trichoplax adhaerens]
gi|190579403|gb|EDV19499.1| hypothetical protein TRIADDRAFT_62066 [Trichoplax adhaerens]
Length = 583
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 162/544 (29%), Positives = 259/544 (47%), Gaps = 90/544 (16%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG----------ASRERLME 72
C CG VLED +E +F +NA G + + G +V +G SRE ++
Sbjct: 24 CTSCGAVLEDSIIVSEISFKENAMGGASVIGQYVAPDGKSHGYVDGFHGFSKESREITLQ 83
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ Q+ L + ++ + + RF+ +AV + T+GR+T V A+CLY+ CR +
Sbjct: 84 NGKKRLTQLGQQLKLNQN--CIDMGYRFFKMAVNKRLTRGRKTSHVVAACLYIVCRVED- 140
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N 191
+L+DFS+ L +NVY LG YL++ L I + +DP +++H+F ++L G
Sbjct: 141 --MLLDFSDILQVNVYVLGKTYLRITAALSIN-----IPAIDPCLYIHRFANKLEFGDKT 193
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
VC A ++A MKRDW+ GR+PSGLCGA L VSA HG +K I+++V +CEATL
Sbjct: 194 HDVCMMALRLVARMKRDWMHHGRRPSGLCGAGLLVSARLHGYNRTKKQIIRVVRVCEATL 253
Query: 252 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 311
KRL EFE T S LTI++F +K +L E P + K +
Sbjct: 254 RKRLGEFEETPSAKLTIDEF--QKIDLEE-------EQDPPSFTQSRKRAKQFQEDPVIS 304
Query: 312 CGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVD- 370
L E I E LE +V E++R+++ + N E+ + P ++ +
Sbjct: 305 TDLAG----EVQAIQEELE--------KVLEKKRLLEDVEQSNQEEEKRDNIPVLNSTNS 352
Query: 371 ---KVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGS--DNFSDIDDFEVD 425
++ P P T +T +TP + AT E +D ++ S +DD E++
Sbjct: 353 YCTRLSGPLP-------TVETVCG-------RTPSL-ATQEFNDKGVEEDLSYVDDDEIN 397
Query: 426 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 485
YL +E+E K +W E N++YL Q K + ++ + PE + ++
Sbjct: 398 EYLLDEKEVEIKTKVWTEENKDYLTAQLEK-------ASRIDKDSNDKPESKKRKRKYKR 450
Query: 486 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSV 545
+ PA + EA +ML +K++SSKINY+VL L + +
Sbjct: 451 NQLIS--------------------PANSVGEAIEKMLAEKKISSKINYEVLRDLTETNA 490
Query: 546 CLYS 549
C S
Sbjct: 491 CTTS 494
>gi|348554702|ref|XP_003463164.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Cavia porcellus]
Length = 677
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 172/565 (30%), Positives = 262/565 (46%), Gaps = 90/565 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+N+ G S G FV T+ + SR +
Sbjct: 25 CTACGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGPGKTPTLGGGFHVNLGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + + L + + + A F+ +AV ++ T+GR+ V A+CLYL CR
Sbjct: 85 TLQNGRRHIHHLGSQLQLNQ--HCLDTAFIFFKMAVNKSLTRGRKMTHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE
Sbjct: 198 EKNHEVSMTALRLLQCMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCE 257
Query: 249 ATLMKRLIEFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNN 289
+TL KRL EFE+T + LTI++FM R K+L + ++ L
Sbjct: 258 STLRKRLTEFEDTPTSQLTIDEFMKIDLEGECDPPSYTAGQRKLRMKQLEQVLSKQLEEV 317
Query: 290 GPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQV-----AERE 344
++S + + + +P A G +S+ +G + + AE E
Sbjct: 318 EGEISSYQDAIEIELENSRPKARG-------ALANLSK--DGSVEDTTSSIFGEEDAEDE 368
Query: 345 RMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTT-----QTASNEGEGDHTK 399
+ A++ N F RE D V+ PE P + TA++ G D +
Sbjct: 369 ELEAAASHMNKDFYRELLGGGSGSSDAVEIPEEGGHPLALESLLGPLPTAASLGISDSIR 428
Query: 400 ----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 455
+P D + DG + S IDD E+D Y+ NE E K +W N EYL EQ K
Sbjct: 429 ECISSPNRDPKDASGDGELDLSGIDDLEIDRYILNEAEARVKAELWMRENAEYLREQREK 488
Query: 456 EAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTA 515
EA A K EL KE + K++ + + A TA
Sbjct: 489 EARIAKEK------------------ELGIY---------KEHKPKKSCKRREPIQASTA 521
Query: 516 LEATRRMLTKKRLSSKINYDVLEKL 540
EA +ML +K++SSKINY VL L
Sbjct: 522 REAIEKMLEQKKISSKINYSVLRDL 546
>gi|348554704|ref|XP_003463165.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Cavia porcellus]
Length = 650
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 170/553 (30%), Positives = 255/553 (46%), Gaps = 93/553 (16%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG VLED+ +E FV+N+ G S G FV + D R +
Sbjct: 25 CTACGSVLEDNIIVSEVQFVENSGGGSSAVGQFV-----------------SLDGRRHIH 67
Query: 83 N-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ + + + A F+ +AV ++ T+GR+ V A+CLYL CR + P +L+D S+
Sbjct: 68 HLGSQLQLNQHCLDTAFIFFKMAVNKSLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSD 127
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARD 200
L +NVY LG +L L + L I + +DP +++ +F L G N +V TA
Sbjct: 128 LLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALR 182
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260
+L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL EFE+
Sbjct: 183 LLQCMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFED 242
Query: 261 TDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMNEVLC 301
T + LTI++FM R K+L + ++ L ++S + +
Sbjct: 243 TPTSQLTIDEFMKIDLEGECDPPSYTAGQRKLRMKQLEQVLSKQLEEVEGEISSYQDAIE 302
Query: 302 KHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQV-----AERERMVKASAEENSS 356
+ +P A G +S+ +G + + AE E + A++ N
Sbjct: 303 IELENSRPKARG-------ALANLSK--DGSVEDTTSSIFGEEDAEDEELEAAASHMNKD 353
Query: 357 FERESDSPFMSRVDKVQSPEPERVPKNCTT-----QTASNEGEGDHTK----TPGVDATT 407
F RE D V+ PE P + TA++ G D + +P D
Sbjct: 354 FYRELLGGGSGSSDAVEIPEEGGHPLALESLLGPLPTAASLGISDSIRECISSPNRDPKD 413
Query: 408 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 467
+ DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 414 ASGDGELDLSGIDDLEIDRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK---- 469
Query: 468 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 527
EL KE + K++ + + A TA EA +ML +K+
Sbjct: 470 --------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKK 506
Query: 528 LSSKINYDVLEKL 540
+SSKINY VL L
Sbjct: 507 ISSKINYSVLRDL 519
>gi|395746383|ref|XP_002825219.2| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Pongo abelii]
Length = 677
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 171/565 (30%), Positives = 260/565 (46%), Gaps = 90/565 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVK 254
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFMA-------------------RKKELHEGVAANL 286
+CE+TL KRL EFE+T + LTI++FM R K+L + ++ L
Sbjct: 255 VCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKL 314
Query: 287 PNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERE 344
++S + + + +P A G S ++ T + L G + E E
Sbjct: 315 EEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTTSSLCG------EEDTEDE 368
Query: 345 RMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTT-----QTASNEGEGDHTK 399
+ A++ N RE + SPE P + TA++ G D +
Sbjct: 369 ELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLDPLPTAASLGISDSIR 428
Query: 400 ----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 455
+ D + DG + S IDD E+D Y+ NE E K +W N EYL EQ K
Sbjct: 429 ECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREK 488
Query: 456 EAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTA 515
EA A K EL KE + K++ + + A TA
Sbjct: 489 EARIAKEK------------------ELGIY---------KEHKPKKSCKRREPIQASTA 521
Query: 516 LEATRRMLTKKRLSSKINYDVLEKL 540
EA +ML +K++SSKINY VL L
Sbjct: 522 REAIEKMLEQKKISSKINYSVLRGL 546
>gi|390469562|ref|XP_003734142.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit [Callithrix jacchus]
Length = 681
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 168/564 (29%), Positives = 260/564 (46%), Gaps = 88/564 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVK 254
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFMA-------------------RKKELHEGVAANL 286
+CE+TL KRL EFE+T + LTI++FM R K+L + ++ L
Sbjct: 255 VCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKL 314
Query: 287 PNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM 346
++S + + ++ +P A G S ++ +E A + +
Sbjct: 315 EEVEGEISSYQDAIEIELESSRPKAKGGLASLAKDG-----SVEDTASSLCGEEDTEDEE 369
Query: 347 VKASAEE-NSSFERESDSPFMSRVDKVQSPEPERVPKNCTT-----QTASNEGEGDHTK- 399
++A+A N RE + SP+ P + TA++ G D +
Sbjct: 370 LEAAASHLNKDLYRELLGATPGSSEAAGSPQGSGRPPALQSLLDPLPTAASLGISDSIRE 429
Query: 400 ---TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKE 456
+ D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KE
Sbjct: 430 CISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKE 489
Query: 457 AAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL 516
A A K EL KE + K++ + + A TA
Sbjct: 490 ARIAKEK------------------ELGIY---------KEHKPKKSCKRREPIQASTAR 522
Query: 517 EATRRMLTKKRLSSKINYDVLEKL 540
EA +ML +K++SSKINY VL L
Sbjct: 523 EAIEKMLEQKKISSKINYSVLRGL 546
>gi|22035556|ref|NP_001510.2| transcription factor IIIB 90 kDa subunit isoform 1 [Homo sapiens]
gi|397470867|ref|XP_003807033.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2 [Pan
paniscus]
gi|20455319|sp|Q92994.1|TF3B_HUMAN RecName: Full=Transcription factor IIIB 90 kDa subunit;
Short=TFIIIB90; Short=hTFIIIB90; AltName: Full=B-related
factor 1; Short=BRF-1; Short=hBRF; AltName: Full=TAF3B2;
AltName: Full=TATA box-binding protein-associated
factor, RNA polymerase III, subunit 2
gi|1737205|gb|AAB38876.1| TFIIB related factor hBRF [Homo sapiens]
gi|119602316|gb|EAW81910.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_d
[Homo sapiens]
gi|261857828|dbj|BAI45436.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [synthetic construct]
gi|410213426|gb|JAA03932.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410254028|gb|JAA14981.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410306454|gb|JAA31827.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410332909|gb|JAA35401.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
Length = 677
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 170/564 (30%), Positives = 259/564 (45%), Gaps = 88/564 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVK 254
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFMA-------------------RKKELHEGVAANL 286
+CE+TL KRL EFE+T + LTI++FM R K+L + ++ L
Sbjct: 255 VCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKL 314
Query: 287 PNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM 346
++S + + + +P A G S ++ T E A + +
Sbjct: 315 EEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGST-----EDTASSLCGEEDTEDEE 369
Query: 347 VKASAEE-NSSFERESDSPFMSRVDKVQSPEPERVPKNCTT-----QTASNEGEGDHTK- 399
++A+A N RE + SPE P + TA++ G D +
Sbjct: 370 LEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLDPLPTAASLGISDSIRE 429
Query: 400 ---TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKE 456
+ D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KE
Sbjct: 430 CISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKE 489
Query: 457 AAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL 516
A A K EL KE + K++ + + A TA
Sbjct: 490 ARIAKEK------------------ELGIY---------KEHKPKKSCKRREPIQASTAR 522
Query: 517 EATRRMLTKKRLSSKINYDVLEKL 540
EA +ML +K++SSKINY VL L
Sbjct: 523 EAIEKMLEQKKISSKINYSVLRGL 546
>gi|395861901|ref|XP_003803212.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Otolemur garnettii]
Length = 651
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 171/553 (30%), Positives = 261/553 (47%), Gaps = 92/553 (16%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG VLED+ +E FV+++ G S G FV + D R +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVESSGGGSSAVGQFV-----------------SLDGRRHIH 67
Query: 83 NALN-IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ N + + + A F+ +AV+++ T+GRR V A+CLYL CR + P +L+D S+
Sbjct: 68 HLGNQLQLNQHCLDTAFNFFKMAVSKHLTRGRRMAHVTAACLYLVCRTEGTPHMLLDLSD 127
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARD 200
L +NVY LG +L L + L I + +DP +++ +F L G N +V TA
Sbjct: 128 LLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALR 182
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260
+L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL EFE+
Sbjct: 183 LLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFED 242
Query: 261 TDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMNEVLC 301
T + LTI++FM R K+L + ++ L ++S + +
Sbjct: 243 TPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 302
Query: 302 KHKDTGKPFACGLCRSCYEE--FMTISEGLEGGADPPAFQVAERERMVKASAEENSSFER 359
+ +P A G S ++ + L G + E E + A++ N F +
Sbjct: 303 IELENSRPKAKGALASLTKDGPVEDTTSSLLG------EEDTEDEELEAAASHLNKDFYQ 356
Query: 360 E---SDSPFMSRVDKVQSPEPERVPKNCTT-----QTASNEGEGDHTK----TPGVDATT 407
E S++P S + SPE P + TA++ G + + + D T
Sbjct: 357 ELLGSNTPGSS--EAAGSPEGVIRPPALESLLGPLPTAASLGISESIRECISSQSRDPTD 414
Query: 408 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 467
DG + S IDD E+D Y+ NE E K +W + N EYL EQ+ KEA A K
Sbjct: 415 TCGDGELDLSGIDDHEIDRYILNEAEARVKAELWMKENAEYLREQSEKEARIAKEK---- 470
Query: 468 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 527
EL KE + K++ + + A TA EA +ML +K+
Sbjct: 471 --------------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKMLEQKK 507
Query: 528 LSSKINYDVLEKL 540
+SSKINY VL L
Sbjct: 508 ISSKINYSVLRDL 520
>gi|297696024|ref|XP_002825220.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Pongo abelii]
Length = 650
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 169/550 (30%), Positives = 254/550 (46%), Gaps = 87/550 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG VLED+ +E FV+++ G S G FV + D R +
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFV-----------------SLDGRRHIH 67
Query: 83 NALN-IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ N + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+D S+
Sbjct: 68 HLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSD 127
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARD 200
L +NVY LG +L L + L I + +DP +++ +F L G N +V TA
Sbjct: 128 LLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALR 182
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260
+L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL EFE+
Sbjct: 183 LLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFED 242
Query: 261 TDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMNEVLC 301
T + LTI++FM R K+L + ++ L ++S + +
Sbjct: 243 TPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 302
Query: 302 KHKDTGKPFACGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFER 359
+ +P A G S ++ T + L G + E E + A++ N R
Sbjct: 303 IELENSRPKAKGGLASLAKDGSTEDTTSSLCG------EEDTEDEELEAAASHLNKDLYR 356
Query: 360 ESDSPFMSRVDKVQSPEPERVPKNCTT-----QTASNEGEGDHTK----TPGVDATTEAS 410
E + SPE P + TA++ G D + + D +
Sbjct: 357 ELLGGAPGSSEAAGSPEWGGRPPALGSLLDPLPTAASLGISDSIRECISSQSSDPKDASG 416
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 417 DGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK------- 469
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 530
EL KE + K++ + + A TA EA +ML +K++SS
Sbjct: 470 -----------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISS 509
Query: 531 KINYDVLEKL 540
KINY VL L
Sbjct: 510 KINYSVLRGL 519
>gi|338753410|ref|NP_001229717.1| transcription factor IIIB 90 kDa subunit isoform 6 [Homo sapiens]
gi|397470869|ref|XP_003807034.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 3 [Pan
paniscus]
gi|56270588|gb|AAH86856.1| BRF1 protein [Homo sapiens]
Length = 650
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 168/549 (30%), Positives = 253/549 (46%), Gaps = 85/549 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG VLED+ +E FV+++ G S G FV + D R +
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFV-----------------SLDGRRHIH 67
Query: 83 NALN-IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ N + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+D S+
Sbjct: 68 HLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSD 127
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARD 200
L +NVY LG +L L + L I + +DP +++ +F L G N +V TA
Sbjct: 128 LLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALR 182
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260
+L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL EFE+
Sbjct: 183 LLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFED 242
Query: 261 TDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMNEVLC 301
T + LTI++FM R K+L + ++ L ++S + +
Sbjct: 243 TPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 302
Query: 302 KHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEE-NSSFERE 360
+ +P A G S ++ T E A + + ++A+A N RE
Sbjct: 303 IELENSRPKAKGGLASLAKDGST-----EDTASSLCGEEDTEDEELEAAASHLNKDLYRE 357
Query: 361 SDSPFMSRVDKVQSPEPERVPKNCTT-----QTASNEGEGDHTK----TPGVDATTEASD 411
+ SPE P + TA++ G D + + D + D
Sbjct: 358 LLGGAPGSSEAAGSPEWGGRPPALGSLLDPLPTAASLGISDSIRECISSQSSDPKDASGD 417
Query: 412 GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 471
G + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 418 GELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK-------- 469
Query: 472 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSK 531
EL KE + K++ + + A TA EA +ML +K++SSK
Sbjct: 470 ----------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSK 510
Query: 532 INYDVLEKL 540
INY VL L
Sbjct: 511 INYSVLRGL 519
>gi|432940985|ref|XP_004082772.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Oryzias
latipes]
Length = 684
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 165/566 (29%), Positives = 268/566 (47%), Gaps = 86/566 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE----YG---------ASRER 69
C CG VL+D+ +E FV+ G S G FV + + +G SR +
Sbjct: 25 CMSCGSVLDDNIIVSEVEFVETGGGGSLAVGQFVSSEGGQRLPSFGDSYYPGVGSQSRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+++A ++ + + L + + + A FY +A+ + T G R+ V A+CLYL CR
Sbjct: 85 TLQRAKQNINTLGHQLQMNQ--HCLDTAFNFYKMALNKRLTNGHRSSHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG V+L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDVLQVNVYVLGKVFLHLAKELCINAPA-----IDPCLYIPRFAQMLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
N V TA ++ MKRDW+ TGR+PSGLCGAAL VSA H + ++V +V +CE
Sbjct: 198 EKNHDVSMTAMRLVQRMKRDWMHTGRRPSGLCGAALLVSAHMHDFCRTVKEVVNVVKVCE 257
Query: 249 ATLMKRLIEFENTDSGSLTIEDFM-------------------ARKKELHEGVAANLPNN 289
+TL KRL EFE+T + LT+E+FM + ++L + + +P+
Sbjct: 258 STLRKRLTEFEDTPTSKLTVEEFMRVDLDEECDPPSYTAGLKKTKTQQLEKQLMEKMPDV 317
Query: 290 GPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKA 349
++ G + + ++ +P G+ + Y SE + ++ + ++A
Sbjct: 318 EDEIKGYQDEIDAELESLRPKLKGV-YAAYVNRDLSSEDIRSMLSQQDDNQSDEDEELRA 376
Query: 350 SAEENSSFERESDSPFMSRVDKVQSPEPE-------RVPKNCTTQTASNEGEGDHTKTPG 402
A F+++ D+ + + K++ PE ++P+ AS G T G
Sbjct: 377 VARH---FDKDLDTLTVEALIKLEQKTPEEENECGMKIPERVGPSLASILGTMPSAATLG 433
Query: 403 VDATT--------EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAA 454
+ + E DG + S IDD E++ YL +E E K +W N +YL+EQ
Sbjct: 434 LPESINKCTGEERENGDGELDLSGIDDSEIELYLLSESEIKIKTALWMAENSDYLKEQKE 493
Query: 455 KEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQT 514
KEA A K EL KEK+ K + + ++ A T
Sbjct: 494 KEAKIAKEK------------------ELGIY---------KEKKPKSSGKKRSQIRAST 526
Query: 515 ALEATRRMLTKKRLSSKINYDVLEKL 540
A EA +ML +K++S+KINYDVL+ L
Sbjct: 527 ADEAIGKMLEQKKISTKINYDVLKDL 552
>gi|355673453|gb|AER95177.1| BRF1-like protein, subunit of RNA polymerase III transcription
initiation factor IIIB [Mustela putorius furo]
Length = 610
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 159/522 (30%), Positives = 245/522 (46%), Gaps = 75/522 (14%)
Query: 51 LSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
L G F + E SR + ++ + + + L + + + A F+ +AV+++ T
Sbjct: 3 LGGGFHVNLGKE---SRAQTLQNGRRQIHHLGSQLQLNQ--HCLDTAFNFFKMAVSKHLT 57
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
+GRR V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I +
Sbjct: 58 RGRRMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA--- 114
Query: 171 KQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
+DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 115 --IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAAR 172
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA---------------- 273
H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 173 MHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFMKIDLEGECDPPSYTAGQ 232
Query: 274 ---RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEE--FMTISEG 328
R K+L + ++ L + ++S + + + +P A G S + +
Sbjct: 233 RKLRMKQLEQVLSKKLEDVEGEISSYQDAIESELENSRPKAKGTLASLTRDGSVEDSASS 292
Query: 329 LEGGADPPAFQVAERERMVKASAEENSSFERE-SDSPFMSRVDKVQSPEPERVPKNCTT- 386
L G DP E E + A++ N F RE + S + PE P +
Sbjct: 293 LFGEEDP------EDEELQAAASHLNKDFYRELLGAGVSSSSGEAGGPEGGSRPPALESL 346
Query: 387 ----QTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKK 438
TA++ G D + + + T DG + S IDD E+D Y+ NE E K
Sbjct: 347 LGPLPTAASLGISDSIRECISSQSQEPTGARGDGELDLSGIDDLEIDRYILNEAEARVKA 406
Query: 439 IIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEK 498
+W N EYL EQ KEA A K EL KE
Sbjct: 407 ELWMRENAEYLREQREKEARIAKEK------------------ELGIY---------KEH 439
Query: 499 QQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
+ K++ + + A TA EA +ML +K++SSKINY VL+ L
Sbjct: 440 KPKKSCKRREPIQASTAGEAIEKMLEQKKISSKINYSVLQDL 481
>gi|168035366|ref|XP_001770181.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678558|gb|EDQ65015.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 166
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 128/165 (77%), Gaps = 1/165 (0%)
Query: 105 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164
V RNFT+GR T +V +CLY+ CRQ++KP++LIDFS+ L NVY LGAV+LQLCQ+L +
Sbjct: 1 VERNFTRGRPTPRVAGACLYIVCRQENKPYMLIDFSDSLQTNVYVLGAVFLQLCQLLRLE 60
Query: 165 DESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAA 223
+ + VDPS+F+H+F DRL G V ++A ++ASMKRDW+ TGR+PSG+CGAA
Sbjct: 61 QHPIMQRPVDPSLFIHRFADRLQFGKKMHAVANSALRLVASMKRDWMQTGRRPSGVCGAA 120
Query: 224 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 268
L+++A HG + SK+D+V +VHICEATL KRL+EFE T+SGSLT+
Sbjct: 121 LFIAAHIHGFERSKADVVSVVHICEATLKKRLVEFEQTESGSLTV 165
>gi|402877360|ref|XP_003902397.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Papio anubis]
Length = 650
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 167/553 (30%), Positives = 253/553 (45%), Gaps = 93/553 (16%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG VLED+ +E FV+++ G S G FV + D R +
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFV-----------------SLDGRRHIH 67
Query: 83 NALN-IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ N + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+D S+
Sbjct: 68 HLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSD 127
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARD 200
L +NVY LG +L L + L I + +DP +++ +F L G N +V TA
Sbjct: 128 LLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALR 182
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260
+L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL EFE+
Sbjct: 183 LLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFED 242
Query: 261 TDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMNEVLC 301
T + LTI++FM R K+L + ++ L ++S + +
Sbjct: 243 TPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 302
Query: 302 KHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQV-----AERERMVKASAEENSS 356
+ +P A G S + +G A+ A + E E + A++ N
Sbjct: 303 IELENSRPKAKGGLASLAK---------DGSAEDTASSLCGEEDTEDEELEAAASHLNKD 353
Query: 357 FERESDSPFMSRVDKVQSPEPERVPKNCTT-----QTASNEGEGDHTKTPGVDATTEASD 411
RE + +PE P + TA++ G D + ++ D
Sbjct: 354 LYRELLGGTPGSSEATGNPEWGGRPPALGSLLDPLPTAASLGISDSIRECISSQCSDPKD 413
Query: 412 GSDN----FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 467
S + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 414 ASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK---- 469
Query: 468 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 527
EL KE + K++ + + A TA EA +ML +K+
Sbjct: 470 --------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKK 506
Query: 528 LSSKINYDVLEKL 540
+SSKINY VL L
Sbjct: 507 ISSKINYSVLRGL 519
>gi|403284473|ref|XP_003933594.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Saimiri
boliviensis boliviensis]
Length = 623
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 160/534 (29%), Positives = 245/534 (45%), Gaps = 80/534 (14%)
Query: 41 FVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRF 100
F + A L G F + E SR + ++ + + N L + + + A F
Sbjct: 5 FFEGAGKTPTLGGGFHVNLGKE---SRAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNF 59
Query: 101 YGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160
+ +AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 60 FKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARE 119
Query: 161 LYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGL 219
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGL
Sbjct: 120 LCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGL 174
Query: 220 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA------ 273
CGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 175 CGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEE 234
Query: 274 -------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYE 320
R K+L + ++ L ++S + + + +P A G + +
Sbjct: 235 CDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLANLAK 294
Query: 321 EFMTISEGLEGGADPPAFQV-----AERERMVKASAEENSSFERESDSPFMSRVDKVQSP 375
+G A+ A V E E + A++ N RE + SP
Sbjct: 295 ---------DGSAEDTASSVCGEEDTEDEELEAAASHLNKDLYRELLGATPGSSEAAGSP 345
Query: 376 EPERVPKNCTT-----QTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDG 426
+ P + TA++ G D + + D + DG + S IDD E+D
Sbjct: 346 QWSGRPPALESLLDPLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDR 405
Query: 427 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 486
Y+ NE E K +W N EYL EQ KEA A K EL
Sbjct: 406 YILNESEARVKAELWMRENAEYLREQREKEARIAKEK------------------ELGIY 447
Query: 487 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 448 ---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 492
>gi|194225425|ref|XP_001494856.2| PREDICTED: transcription factor IIIB 90 kDa subunit, partial [Equus
caballus]
Length = 620
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 167/534 (31%), Positives = 252/534 (47%), Gaps = 78/534 (14%)
Query: 41 FVKNAAGQS-QLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
FV AG++ L G F + E SR + ++ + + N L + + + A
Sbjct: 1 FVFLGAGKTPTLGGGFHVNLGKE---SRAQTLQNGRRQIHHLGNQLQLNQ--HCLDTAFN 55
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 56 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 115
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 218
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 116 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 170
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 273
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 171 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFMKIDLEE 230
Query: 274 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 319
R KEL + ++ L ++S + + + +P A G S
Sbjct: 231 ECDPPSYTAGQRKLRMKELEQVLSKQLEEVEGEISSYQDAIEIELENSRPKAKGALAS-- 288
Query: 320 EEFMTISEGLEGGADPP-AFQVAERERMVKASAEENSSFERE---SDSPFMSRVDKVQSP 375
+T +E A + AE E + A++ N F RE S +P S SP
Sbjct: 289 ---LTKDGSVEDTASSLFGEEDAEDEELEAAASHLNKDFYRELLGSGNPGSSEAGG--SP 343
Query: 376 EPERVPKNCTT-----QTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDG 426
E P + TA++ G D + + D + DG + S IDD E+D
Sbjct: 344 EAGSRPPALESLLGPLPTAASLGISDSIRECISSQSRDPKDASGDGELDLSGIDDLEIDR 403
Query: 427 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 486
Y+ NE E K +W N EYL EQ KEA A K EL
Sbjct: 404 YILNEAEARVKAELWMRENAEYLREQREKEARIAKEK------------------ELGIY 445
Query: 487 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 446 ---------KEHKPKKSCKRREPIQASTAGEAIEKMLEQKKISSKINYSVLRDL 490
>gi|198427438|ref|XP_002130866.1| PREDICTED: similar to LOC494758 protein [Ciona intestinalis]
Length = 657
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 163/579 (28%), Positives = 260/579 (44%), Gaps = 84/579 (14%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-- 61
C +C P C CG VLE++ +E + +NA G S + G FV T S
Sbjct: 5 CPNCKSSEFDVDPARGDTVCMNCGSVLEENRIVSEISIQENADGSSSVVGQFVTTEGSYN 64
Query: 62 ------EYGA---SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+YG SR+ ++K + +R M LN+ V A F+ +A+++ ++G
Sbjct: 65 PHLSGFQYGIGKESRQITLDKGKNQIRDMAAQLNLNR--HCVDTAFNFFKMAISKRLSRG 122
Query: 113 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ 172
RR + A+CLY+ CR + P LL+DFS+ +NV+ LG V+L L + L+I L
Sbjct: 123 RRITHIVAACLYMTCRTEGTPHLLLDFSDITQVNVFILGKVFLLLAKELHIN-----LPV 177
Query: 173 VDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 231
+DP +++ +F RL +V A +++ MKRDWI TGR+PSGLCGAAL V+A H
Sbjct: 178 LDPCMYITRFAHRLDFNEKTHEVSVAAMRLVSRMKRDWIHTGRRPSGLCGAALLVAARLH 237
Query: 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----------------RK 275
G +D+VK+ I T+ KRL EFE+T S LTI +FM K
Sbjct: 238 GFNCDLNDVVKVARIGHDTIRKRLNEFESTPSSKLTINEFMKIDLEAEHDPPAFINSRIK 297
Query: 276 KELH--EGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 333
++H E A+L N K+S + + + + + + + E +
Sbjct: 298 AKIHQLEAEGASLENEIGKLSNVIDDKLTQQSSRPASPANVSKPSNSSVNRVPEHVSNDD 357
Query: 334 DPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEG 393
DP R +E + + SP K P+P R T T +
Sbjct: 358 DPEL-----RAAATFMHSEHPEAVAQSLLSP------KRGLPQPTRQGFRSTGPTPTAAS 406
Query: 394 EGDHTKTPGVDATTEASD---------GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEM 444
G T +T SD G + + IDD E+D L + E K+ IW +
Sbjct: 407 LGLRTSIDECLSTPSDSDRLHENDNNNGELDLTGIDDNEIDKLLLSPHESEIKQRIWMKE 466
Query: 445 NREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA 504
E+++E L+ +E+ K+R+ ++ K+
Sbjct: 467 YGEFVKE-------------------------LEEKREIKRIENE--KKNRRPRKFKQVR 499
Query: 505 EAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 543
+ G ++TA EA ++++++RLS+KINY+ L+K +D
Sbjct: 500 YKEYYGESRTAGEAIEKLVSRQRLSNKINYEALKKATED 538
>gi|351698489|gb|EHB01408.1| Transcription factor IIIB 90 kDa subunit [Heterocephalus glaber]
Length = 638
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 152/472 (32%), Positives = 225/472 (47%), Gaps = 69/472 (14%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
F+ +A ++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 74 FFKMAANKSLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 133
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 218
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 134 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 188
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 273
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 189 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEE 248
Query: 274 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 319
R K+L + ++ L ++S + + + +P A R
Sbjct: 249 ECDPPSYTAGQRKLRMKQLEQVLSKQLEEVEGEISSYQDAIENELENSRPKA----RGAL 304
Query: 320 EEFMTISEGLEGGADPPAF--QVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEP 377
F +GL F + AE E + A++ N F RE D V+SPE
Sbjct: 305 ANFS--KDGLIEDTTSSVFGEEDAEDEELEAAASHMNKDFYRELLGGGSGSSDAVESPEE 362
Query: 378 ERVPKNCTT-----QTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYL 428
P + TA++ G D + +P D + DG + S IDD E+D Y+
Sbjct: 363 GGQPLALESLLGPLPTAASLGISDSIRECISSPSRDPKDTSGDGELDLSGIDDLEIDRYI 422
Query: 429 HNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAA 488
NE E K +W N EYL EQ KEA A K EL
Sbjct: 423 LNEAEARVKAELWMRENAEYLREQREKEARIAKEK------------------ELGIY-- 462
Query: 489 AAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
KE + K++ + + A +A EA +ML +K++SSKINY VL L
Sbjct: 463 -------KEHKPKKSCKRREPIQASSAREAIEKMLEQKKISSKINYSVLRDL 507
>gi|190347671|gb|EDK39991.2| hypothetical protein PGUG_04089 [Meyerozyma guilliermondii ATCC
6260]
Length = 539
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 155/551 (28%), Positives = 260/551 (47%), Gaps = 70/551 (12%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------SRERLME 72
+ C RCG V E++ +E F ++++G + + G V Q+ +G SRE+ ++
Sbjct: 26 VSCSRCGTVQEENPIVSEVQFGESSSGAAVVQGTMVGADQTRATFGGRQNAMESREQTLQ 85
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
++++ A+ I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 86 NGRKKIKRIATAMRI--PDYISDAAAEWFRLALTLNFVQGRRSQNVLAACLYVACRKEKT 143
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N 191
P +LIDFS+ L I+VY LGA +L++ + L+I + L DPS+F+ F +RL G
Sbjct: 144 PHMLIDFSSRLQISVYSLGATFLKMVRALHITN----LPLADPSLFIQHFAERLDFGDLL 199
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
KV A + M DWI GR+P+G+ GA + ++A + + S ++IV + H+ E TL
Sbjct: 200 TKVIKDAVKLAQRMANDWIHEGRRPAGVAGACVLLAARMNNFRRSHAEIVAVAHVAEETL 259
Query: 252 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCK------HKD 305
+RL EF+ T SG+L++ DF R E + P N P + E +
Sbjct: 260 QRRLNEFKKTSSGALSVADF--RSSEQMD------PANPPSFNKNREQELRIAQELQQAQ 311
Query: 306 TGKPFACGLCRSCYEE-----FMTISEGLEGGADPPAFQVAERERMVKASAE--ENSSFE 358
+ + G S E TI + + + Q+ +R+V+A + +NS +
Sbjct: 312 STETLLGGETSSAKEAHKQKLLKTILKDCDLSEQEISTQL---QRIVQAQQKSLQNSMYT 368
Query: 359 RESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSD 418
SD + +D+V +P + KN D S +F+D
Sbjct: 369 TPSDRQGDASIDRVDLDKPRNLSKNLPRTE---------------DILQTVSSHPTDFTD 413
Query: 419 IDDFEVDGYLHNEEEKHYKKIIWEEMNREYL---EEQAAKEAAAAAAKAALEASYKNCPE 475
+DD E+ + EEE K+ +W +N ++L E + KE A + K P+
Sbjct: 414 LDDEELSLFKLTEEEHRLKERVWTGLNHDFLLAQERKRLKEEADELTGNTSGSKRKRKPK 473
Query: 476 --GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 533
G++ E+ A A ++G TA ++ +RML+KK S KIN
Sbjct: 474 ASGIEDLNEMGMGEALA-----------NIGVDDSTGEPLTAADSAKRMLSKKSFSKKIN 522
Query: 534 YDVLEKLFDDS 544
Y L LF ++
Sbjct: 523 YATLGDLFGET 533
>gi|119602312|gb|EAW81906.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_a
[Homo sapiens]
Length = 699
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 171/587 (29%), Positives = 260/587 (44%), Gaps = 112/587 (19%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVK 254
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFMA-------------------RKKELHEGVAANL 286
+CE+TL KRL EFE+T + LTI++FM R K+L + ++ L
Sbjct: 255 VCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKL 314
Query: 287 PNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERE 344
++S + + + +P A G S ++ T + L G + E E
Sbjct: 315 EEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCG------EEDTEDE 368
Query: 345 RMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTT-----QTASNEGEGDHTK 399
+ A++ N RE + SPE P + TA++ G D +
Sbjct: 369 ELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLDPLPTAASLGISDSIR 428
Query: 400 ----TPGVDATTEASDGSDNFSDIDDFEVD----------------------GYLHNEEE 433
+ D + DG + S IDD E+D Y+ NE E
Sbjct: 429 ECISSQSSDPKDASGDGELDLSGIDDLEIDRRDLSMPRCAKAKSQPHFPVLAQYILNESE 488
Query: 434 KHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAK 493
K +W N EYL EQ KEA A K EL
Sbjct: 489 ARVKAELWMRENAEYLREQREKEARIAKEK------------------ELGIY------- 523
Query: 494 SRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 524 --KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 568
>gi|449015338|dbj|BAM78740.1| RNA polymerase III transcription factor IIIB [Cyanidioschyzon
merolae strain 10D]
Length = 953
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 153/526 (29%), Positives = 227/526 (43%), Gaps = 121/526 (23%)
Query: 20 QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ------------------- 60
Q C CG V+E++ E FV+ A G S + G FVRT
Sbjct: 249 QTACMLCGHVVEENTVVNELQFVEGAGGHSAVVGQFVRTGSSGAASLGAAAAATAAGASL 308
Query: 61 ----SEYGASR-------ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
S G +R R + A R A + V A R + +AV NF
Sbjct: 309 LYNASTAGVTRLTIGHRESRELTYAAGRRRIATIASQLHLPPRFVDAAHRLFTLAVQHNF 368
Query: 110 TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV 169
+GRRT+ V A+ LY+ CR++ P LLIDFS+ L INVY LG YL+LC+VL++A
Sbjct: 369 VQGRRTQTVAAAALYIVCRREKTPHLLIDFSDTLRINVYVLGHTYLKLCRVLHLA----- 423
Query: 170 LKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
L +DPS ++H+F RL G + V TA +++ MKRDWI TGR+P+GLCGAAL ++A
Sbjct: 424 LPIIDPSFYIHRFASRLDLGEKQNAVAQTALRLISRMKRDWIHTGRRPAGLCGAALLIAA 483
Query: 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPN 288
HG + S+ +I +V + + T+ +RL E E T +G+LT + A
Sbjct: 484 RMHGFRRSQREIGAVVRVGDMTIRQRLCEIEETPTGTLTGRELAAE-------------- 529
Query: 289 NGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQ--------- 339
SG+ E + + T P A S + L+ G DPPAF+
Sbjct: 530 -----SGLIESVAEEDTTEAPLAATADTSANAVSPEAVDTLD-GCDPPAFRRRHALSSSS 583
Query: 340 ----------VAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTA 389
V E+ + + ++S E + F+ + + E ERVP A
Sbjct: 584 SLEWLEQQHHVLEQSKAAEQDIVADTSLT-EQERAFL---EASATAEGERVPVTVLVAPA 639
Query: 390 SNEG--------------------------EGDHTKTPGVDA------TTEASDGSDNF- 416
++ G + T GV A T +G N+
Sbjct: 640 TSHGAVSNYVGSVRREASGPLAPLGAAADERAANPVTTGVIAGTSGLSTRSGPEGGANYR 699
Query: 417 ---------SDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQA 453
SD+D E ++ EE +++ IW MN+E++E +A
Sbjct: 700 WLSDRVEELSDLDSEEEAMFVCTPEETAFREKIWTAMNQEWIEREA 745
>gi|224034963|gb|ACN36557.1| unknown [Zea mays]
Length = 195
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 98/161 (60%), Positives = 123/161 (76%), Gaps = 5/161 (3%)
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+H+FT LL
Sbjct: 5 RQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFIHRFTKLLL 64
Query: 188 PGG--NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G N V DTA I+ASMKRDW+ T RKPSGLCGAALY++AL+HG ++K+DIV +VH
Sbjct: 65 GLGRRNNDVSDTALRIVASMKRDWMQTRRKPSGLCGAALYIAALSHGCNYTKADIVSVVH 124
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANL 286
+CEATL KRLIEFENTDSGSLT+ + M K L + + +L
Sbjct: 125 VCEATLTKRLIEFENTDSGSLTLMNLM---KSLFQNIRPSL 162
>gi|146414780|ref|XP_001483360.1| hypothetical protein PGUG_04089 [Meyerozyma guilliermondii ATCC
6260]
Length = 539
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 157/548 (28%), Positives = 267/548 (48%), Gaps = 64/548 (11%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------SRERLME 72
+ C RCG V E++ +E F + ++G + + G V Q+ +G SRE+ ++
Sbjct: 26 VSCSRCGTVQEENPIVSEVQFGELSSGAAVVQGTMVGADQTRATFGGRQNAMESREQTLQ 85
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
++++ A+ I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 86 NGRKKIKRIATAMRI--PDYISDAAAEWFRLALTLNFVQGRRSQNVLAACLYVACRKEKT 143
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N 191
P +LIDFS+ L I+VY LGA +L++ + L+I + L DPS+F+ F +RL G
Sbjct: 144 PHMLIDFSSRLQISVYSLGATFLKMVRALHITN----LPLADPSLFIQHFAERLDFGDLL 199
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
KV A + M DWI GR+P+G+ GA + ++A + + S ++IV + H+ E TL
Sbjct: 200 TKVIKDAVKLAQRMANDWIHEGRRPAGVAGACVLLAARMNNFRRSHAEIVAVAHVAEETL 259
Query: 252 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPN---NGPKVSGMNEVLCKHKDTGK 308
+RL EF+ T SG+L++ DF + L + AN P+ N + + + L + + T +
Sbjct: 260 QRRLNEFKKTSSGALSVADF----RLLEQMDPANPPSFNKNREQELRIAQELQQAQST-E 314
Query: 309 PFACGLCRSCYEE-----FMTISEGLEGGADPPAFQVAERERMVKASAE--ENSSFERES 361
G S E TI + + + Q+ +R+V+A + +NS + S
Sbjct: 315 TLLGGETSSAKEAHKQKLLKTILKDCDLSEQEISTQL---QRIVQAQQKSLQNSMYTTPS 371
Query: 362 DSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDD 421
D + +D+V +P + KN D +T + T +F+D+DD
Sbjct: 372 DRQGDASIDRVDLDKPRNLSKNLPRTE-------DILQTVSLHPT--------DFTDLDD 416
Query: 422 FEVDGYLHNEEEKHYKKIIWEEMNREYL---EEQAAKEAAAAAAKAALEASYKNCPE--G 476
E+ + EEE K+ +W +N ++L E + KE A + K P+ G
Sbjct: 417 EELSLFKLTEEEHRLKERVWTGLNHDFLLAQERKRLKEEADELTGNTSGSKRKRKPKASG 476
Query: 477 LQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDV 536
++ E+ A A ++G TA ++ +RML+KK S KINY
Sbjct: 477 IEDLNEMGMGEALA-----------NIGVDDSTGEPLTAADSAKRMLSKKSFSKKINYAT 525
Query: 537 LEKLFDDS 544
L LF ++
Sbjct: 526 LGDLFGET 533
>gi|410916049|ref|XP_003971499.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Takifugu
rubripes]
Length = 690
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 164/577 (28%), Positives = 255/577 (44%), Gaps = 106/577 (18%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT------------IQSEYGA-SRER 69
C CG VLED+ +E FV+ + G S G FV + G SR +
Sbjct: 25 CTDCGSVLEDNIIVSEVQFVEGSGGVSSAVGQFVSADGPVKAPLLGSGFHTSVGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ ++ + + L + + + A F+ + V+++ T+GR+TE V A+CLYL CR
Sbjct: 85 TLQGGKRQIQHLGSQLQLNQ--HCLDTAFNFFKMVVSKHLTRGRKTEHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYILGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
+V TA ++ MKRDW+ TGR+PSGLCGAAL V+A H + + D++ +V +C+
Sbjct: 198 VKTHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVAARMHKFRRTVKDVISVVKVCQ 257
Query: 249 ATLMKRLIEFENTDSGSLTIEDFM-----------------------------ARKKELH 279
TL KRL EFE+T + LTI++FM RK +
Sbjct: 258 TTLRKRLTEFEDTPTSQLTIDEFMKVDLEQECDPPSFTAGQHKVKMQQLEQELTRKLDDV 317
Query: 280 EG--------VAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 331
EG + L + PK+ G+ K D K S + M + + ++
Sbjct: 318 EGEISCYKDEIETELEKSRPKLRGIYNTFTKESDPAKAEVM----SVTSDPMELEDEVQA 373
Query: 332 GA-----DPPAFQVAERERMVKAS--AEENSSFERESDSPFMSRVDKVQSPEPERVPKNC 384
A D + E+E VK + E +E+ V V+ P +
Sbjct: 374 AAQKLTQDFLCHVIQEQEGWVKKAEDGEHKEDLLKET-------VKSVRQGPPLGIILGN 426
Query: 385 TTQTASNEGEGDHTKTPGVDATTEASDGSD-NFSDIDDFEVDGYLHNEEEKHYKKIIWEE 443
+ AS + + D ++ + E G + + IDD E++ Y+ N++E K +W
Sbjct: 427 LSSAASLDLQQDLEES-ATELEDEQLKGEELDLDGIDDQEIEKYILNDKEVEVKTELWMR 485
Query: 444 MNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA 503
N EYL+EQ KE K + +YK + + R E
Sbjct: 486 QNAEYLKEQKEKEERIQKEKE--QGTYK------------EKSKKPKKKRERME------ 525
Query: 504 AEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
A TA EA ML KK++SSKINYDVL L
Sbjct: 526 --------ASTAGEAIEMMLEKKKISSKINYDVLRHL 554
>gi|325192948|emb|CCA27332.1| transcription factor IIIB putative [Albugo laibachii Nc14]
Length = 531
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 160/576 (27%), Positives = 257/576 (44%), Gaps = 91/576 (15%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C SC H + C CG ++E +N + F + + G S + G FV +
Sbjct: 7 CPSCKCTQIEHVDISGEAVCVNCGTIVEINNIVSSVEFHETSGGNS-VVGQFVSSQGFNA 65
Query: 59 ---IQSEYGAS-----RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
+ + G S RE+ + + ++ L++G V A R Y +A+ RNFT
Sbjct: 66 YSKVSATNGRSYDSNSREKTLANCRRTITRVAGMLSLG--SHYVDSAFRLYALALQRNFT 123
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
+GR++E V A+CLY+ CR++ P LLIDFS+ L NVY LG V+L+ C +L I L
Sbjct: 124 RGRKSEVVIAACLYIVCRRERSPHLLIDFSDALQWNVYVLGGVFLKFCNLLQIH-----L 178
Query: 171 KQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS+++H+F +L L + ++ASMKRDWI TGR+PSG+CGAAL ++A
Sbjct: 179 PLVDPSLYIHRFASQLRLKSKTHTIATIGLRLVASMKRDWIQTGRRPSGICGAALLIAAR 238
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF----------------MA 273
+ S D++ +V+I E TL +RL EF +T LT +
Sbjct: 239 CQSVPCSFQDVMDVVNIGEHTLRRRLKEFADTPIAQLTYQQIGKLEFTGMECDPPIQQRH 298
Query: 274 RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGA 333
R++ + E + NN S M E++ K A G + + +E +
Sbjct: 299 RERRIFESIKDG--NN----SKMRELVSADMMMEKK-ALGPMEEEQTDTLDGNEAALSAS 351
Query: 334 DPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEG 393
A ++ +R ++ A+ S +R +S F ++ E E P C ++
Sbjct: 352 QKAATEILDR---MQRKAKNYLSRQRTQNS-FYKMLEDELVVEIEETPSQCVQPETNDSN 407
Query: 394 EGDHTKTPGVDATTE-----ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 448
+ ++ D E D+ SD+DD E+ G + EE K ++WE+MN E+
Sbjct: 408 DVIDLESTTCDTKHEECKPDQEQAKDSLSDLDDEEICGLILTPEEVDQKALLWEQMNGEF 467
Query: 449 LEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKN 508
++Q K + +K++KR EA +
Sbjct: 468 FKKQEEKRLIKGSTPPP-------------------------------KKKRKRVMEA-D 495
Query: 509 SGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 544
P TA A ++ ++ INYDV+ +LF DS
Sbjct: 496 IPPPDTAQHAIYKLKSR-----NINYDVINELFGDS 526
>gi|320580982|gb|EFW95204.1| TFIIIB B-related factor [Ogataea parapolymorpha DL-1]
Length = 534
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 166/567 (29%), Positives = 266/567 (46%), Gaps = 85/567 (14%)
Query: 14 HRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------ 65
H+ S L C RCG V+E++ E TF + +G + L G+ V Q+ +G
Sbjct: 17 HKTASSDLACARCGTVIEENPIVLEVTFGEAPSGAAMLQGSIVGADQTRANFGNNRGSLD 76
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE+ ++ +R + AL I D I A +++ +A+ NF +GRR++ V A+CLY+
Sbjct: 77 SREQTLQNGKKRIRNVAAALKI--KDYIADAACQWFQLALTNNFVQGRRSQNVVAACLYI 134
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD- 184
ACR++ +LIDFS+ L I+VY +GA +L++ + L+I L VDPS+F+ F +
Sbjct: 135 ACRKEKTHHMLIDFSSRLQISVYAVGATFLKMVKALHITS----LPLVDPSLFIQNFAEK 190
Query: 185 ----RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
R+LP KV + A + M DWI GR+P+G+ GA + ++A + + + S+I
Sbjct: 191 LDFGRMLP----KVINDAIKLAHRMSEDWIHEGRRPAGIAGACILLAARMNNFRRTHSEI 246
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP----NNGPKVSGM 296
V + HI E+T+ KRL EF+NT++ LT+E+F R + V + LP N +
Sbjct: 247 VAVTHIGESTIQKRLNEFKNTNASGLTVEEFRERGQ-----VKSTLPPSFQKNRKSEKKL 301
Query: 297 NEVLCKHKD---TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEE 353
L K T P + I E ++ Q +R+++ K +A
Sbjct: 302 KSQLQKTDPEDVTNDPVLAAILEDSKLSEKEIQEHVKR-----VLQRQKRDKLRKLNATL 356
Query: 354 NSSFERESDSPFMSRVDKVQSPEPERV-----PKNCTTQTASNEGEGDHTKTPGVDATTE 408
E E ++ VQ E ER+ P+N A + E +K P
Sbjct: 357 GEENEEEEEAT------SVQDLEFERMIERNRPRNLL--KALPKTESLLSKIP------- 401
Query: 409 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA--- 465
D +N D DD E++ L EEE K+ +W N+E+L Q K A + A
Sbjct: 402 --DDPENLDDADDDEINNILLTEEESKLKERLWVGSNQEFLLAQETKRLKEDADRIAGHN 459
Query: 466 -----LEASYKNCPEGLQAAQELA---AAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALE 517
+ + K +G E + A++ + + Q+ AA++ S
Sbjct: 460 QHPKRRKRTTKTEDKGNDLKSEYGEYLSGASSHLGLTAALNQELSAADSAKS-------- 511
Query: 518 ATRRMLTKKRLSSKINYDVLEKLFDDS 544
ML K LS KINY+ + +LFDD+
Sbjct: 512 ----MLKNKSLSKKINYEAVNELFDDN 534
>gi|390358626|ref|XP_794011.3| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Strongylocentrotus purpuratus]
Length = 766
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 158/281 (56%), Gaps = 20/281 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
CS+C C CG V+ED+ +E F +N G + + G FV +
Sbjct: 7 CSNCGGSDIDTDQARGNAVCVSCGAVIEDNFIVSEVGFAENTLGGTSVIGQFVSSEGDKS 66
Query: 59 ------IQSEYGA-SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+ YG SR +++ ++ + L + + +A F+ +AV + T+
Sbjct: 67 HTLGNNFRHGYGKESRTVTLQQGKRHIQNLGGQLKLNQHRN--DMAYNFFKMAVQKKLTR 124
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+T + A+CLYL CR +S P +L+D S+ L +NVY LG YL+LCQ L+I NV
Sbjct: 125 GRKTMHIVAACLYLVCRLESTPHMLLDLSDLLQVNVYVLGKTYLKLCQELHI----NV-P 179
Query: 172 QVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
+DP +F+ +F +L VC+TA +++ MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 180 AIDPCLFIQRFAHKLEFDERTDVVCETALRLVSRMKRDWMHTGRRPSGLCGAALLVAARM 239
Query: 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
H ++ D++K+V +C+ATL KRL EFE T SG LTI++F
Sbjct: 240 HNFSRTQKDVIKVVKVCDATLRKRLSEFEETPSGKLTIDEF 280
Score = 45.1 bits (105), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 25/135 (18%)
Query: 406 TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 465
+ ++ DG + + ID+ E++ ++ +E+E K +W + N EY++ KE +
Sbjct: 504 SPDSDDGELDLTGIDEKEMELFILSEKEVMIKTTLWMKENGEYMKLMEEKELRLRKEREL 563
Query: 466 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 525
L GL+ Q + A TA EA ++L +
Sbjct: 564 L---------GLKPDQPKKKRKNNKKPPIQ----------------ANTAGEAIEKLLVE 598
Query: 526 KRLSSKINYDVLEKL 540
K++SSKINYDVL L
Sbjct: 599 KKISSKINYDVLRDL 613
>gi|328785533|ref|XP_623775.3| PREDICTED: transcription factor IIIB 90 kDa subunit-like isoform 2
[Apis mellifera]
Length = 661
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 159/568 (27%), Positives = 256/568 (45%), Gaps = 81/568 (14%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C +C P C CG VLED +E F + +G + G FV +
Sbjct: 6 CRNCGSTDIETDPARGDAVCTECGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 63 ---YGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+GA SR+ ++ A + + L + + + + FY +A+ R T+
Sbjct: 66 ATGFGATYHVNGKESRKITLQNAKKGITHLCMQLQLNQ--HCIDTSMNFYKMALNRQLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+ A+C+Y+ CR + +LID S+ L I V+ELG YL+ Q L I +
Sbjct: 124 GRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLKFTQALCIN-----IP 178
Query: 172 QVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDP +++ +F ++L G +V TA I+ MKRD I +GR+PSGLCGAAL ++A
Sbjct: 179 SVDPCLYIMRFANKLEFGEKTHEVSMTALRIVQRMKRDSIHSGRRPSGLCGAALLMAARL 238
Query: 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNG 290
H S +DI+KIV + E+TL KRLIEF +T S +LT+E+FM E + A
Sbjct: 239 HEFNRSPTDIIKIVKVHESTLRKRLIEFGDTPSSALTLEEFMTVDLEEEQDPPAF----- 293
Query: 291 PKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMT-ISEGLEGGADPPAFQVAERERMVKA 349
+ + KD + + E I + LE D + +R+
Sbjct: 294 --------KIARKKDRERLQRLENIDTEINELQAEIDKQLE---DHRLGKARKRKDAAII 342
Query: 350 SAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNE---GEGDHTKTPGVDAT 406
E+ F RES+ + + +P+ +N + A+N G G + + G+ +T
Sbjct: 343 EKEDTDRFIRESNLDVIKNYVENDIDDPDNEIQNSESSNANNRLIIGLGPNIASMGLIST 402
Query: 407 T--------------EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQ 452
E + G + +D+DD E+D Y+ +E+E +K +W ++N EYL
Sbjct: 403 NNRENETKESVNINFENNSGEIDVADLDDEELDSYIMSEKEAQFKHNLWNKVNAEYL--- 459
Query: 453 AAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPA 512
+Q + ++K+++ K+ PA
Sbjct: 460 ------------------------IQQKEREEKRQKEKEEGKPEKKRRRTTKRNKSQAPA 495
Query: 513 QTALEATRRMLTKKRLSSKINYDVLEKL 540
TA EA +ML +K++SSKINY+VL+ L
Sbjct: 496 NTAGEAIEKMLQEKKISSKINYEVLKSL 523
>gi|342319941|gb|EGU11886.1| Transcription factor TFIIIB complex subunit brf1 [Rhodotorula
glutinis ATCC 204091]
Length = 678
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 179/594 (30%), Positives = 269/594 (45%), Gaps = 88/594 (14%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------- 56
C+SC +Q C RCG VL ++ +E F + +G + + G++V
Sbjct: 3 CTSCGEDSVLEMTEHAQTVCTRCGTVLSENAIVSEIQFGETGSGAAMVQGSYVGADQTRA 62
Query: 57 --------RTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
R +QS+ SRE+ + + ++ L + S+ + +VA RF+ +AV +
Sbjct: 63 RAPGGFRQRGVQSQ--ESREQTLANGRRRIMELATGLRL--SEHLQNVATRFFNLAVNMS 118
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
FTKGRRT+ V A+CLY ACRQ + +LIDFS+ L INV+ LG+ YL+L + L I
Sbjct: 119 FTKGRRTQYVAAACLYAACRQANGTQMLIDFSDLLEINVFVLGSTYLKLVRQLNIN---- 174
Query: 169 VLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
+ VDP I++ +F L G +KV A ++ M RDW+ GR+PSG+CGA L ++
Sbjct: 175 -IPVVDPVIYITRFAALLDFGEETQKVALDATRLVNRMGRDWMQIGRRPSGICGACLLLA 233
Query: 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 287
A + + S ++V++V I + TL KRL EF+ T SG+LT+ DF R L E
Sbjct: 234 ARMNNFRRSIEEVVQVVKIADVTLRKRLAEFKETASGNLTVSDF--RSIWLEE------- 284
Query: 288 NNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMV 347
+ P + L K +D K A R E+ + SE D ++AERE
Sbjct: 285 THDPPAYAVG--LKKEEDARKEQA----RKMREDSIAASETDSVVGDRAFRELAERE--A 336
Query: 348 KASAEENSSFERESDSPFMSR---------VDKVQSPEPERVPKNCTTQTASNEGEGDHT 398
A AE++ + S SP R V+ P P+ K + E +
Sbjct: 337 TADAEDDIA----SSSPVRERARGKENEVEVEGAMLPPPKPSAKALGKRKRVEP-EEEEG 391
Query: 399 KTPGVDATTEASDGSDNFSDIDDFE-VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEA 457
P DA +E D ++ + D E D + E + + + +++ E LE Q K
Sbjct: 392 GAPSSDAASEREDVAEELLEGDGHEQYDAVIEGELQNYLGSNVGVKLSHE-LESQEQKRR 450
Query: 458 AAAAAKAALEASYKNCPEGL---------------QAAQELAAAAAAAVAKSRKEKQQKR 502
A + A E + EGL Q +L K EKQ
Sbjct: 451 AKISQSPAYELDTNDSLEGLDEEELDAFICTEEEVQIKAKLWMEHNKEYLKELAEKQTGP 510
Query: 503 AAEAK--NSGPAQ-------------TALEATRRMLTKKRLSSKINYDVLEKLF 541
E K N P + TA +AT +ML KK+ S KINYD ++ LF
Sbjct: 511 DGELKPINKRPRKKTKPRDGANPTGLTAADATTKMLEKKKFSKKINYDAIKNLF 564
>gi|219129783|ref|XP_002185060.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403555|gb|EEC43507.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 601
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 166/591 (28%), Positives = 258/591 (43%), Gaps = 129/591 (21%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
++C +C C CG V+E++ + FV+ A G S + G FV S
Sbjct: 67 IFCPNCGSTSIEQHDASGASVCTECGVVVEENAIVSAVEFVEGAGGASSMVGQFVSATSS 126
Query: 62 E------------------YG---ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRF 100
+ YG SRE + ++++ + L +G V A R
Sbjct: 127 KAYTGGPGGGGPGGGAGGRYGFSRDSRETTLANGRRRIQEVASRLRLGT--HFVDAAHRL 184
Query: 101 YGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160
+ IAV RNF +GRRT V A+CLY+ACRQ+ +LIDFS+ L +NVY LG +L+ ++
Sbjct: 185 FTIAVERNFVQGRRTTHVVAACLYIACRQEKSQHMLIDFSDALQVNVYTLGTCFLKFRRL 244
Query: 161 LYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
L + L+ +DP++++++F L L V TA ++A MKRDWI GR+P+G+
Sbjct: 245 LGLK-----LEIIDPALYIYRFAAHLDLDEKANAVSLTALRLVARMKRDWIVAGRRPAGI 299
Query: 220 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM------- 272
C AAL +++ HG D+ +I+ +C T+ R+ EFE+T S +LT+E F
Sbjct: 300 CAAALLIASRAHGFSRHHQDVTRILRVCGWTVTNRVKEFEHTPSAALTLEQFQKVDLDVE 359
Query: 273 -------------ARKK-------ELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFAC 312
AR K EL E + L GP V G + DT
Sbjct: 360 ADPPVFRRNKFREARAKAIRQGNVELLESESGPLATTGPVVDGDGD---GQLDT------ 410
Query: 313 GLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKV 372
I G + GA Q + K+ A+E + D
Sbjct: 411 -----------EIGAGGKMGAKKVQLQT-----LYKSLAKE------------LLPSDAA 442
Query: 373 QSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEE 432
Q P P T+T N E G+ T E D F++I + N+E
Sbjct: 443 QKQRPPSAP----TETQFNLSEW----KAGMPDTME-----DEFANI-------FRDNDE 482
Query: 433 EKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVA 492
E+ K++I+ ++N++YL Q KE+ + +A+L K + A A ++A
Sbjct: 483 ERE-KEVIFNKINKDYLVTQKRKESERLSVEASLLDREKT---------DAAQAESSARY 532
Query: 493 KSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 543
+RK+K + K G T E + +++S KINYD L +FD+
Sbjct: 533 NTRKKKSR------KADGSIMTTEEQLLAAVAARKVSRKINYDALSSIFDE 577
>gi|338753408|ref|NP_001229716.1| transcription factor IIIB 90 kDa subunit isoform 5 [Homo sapiens]
gi|332843232|ref|XP_510208.3| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2 [Pan
troglodytes]
gi|397470865|ref|XP_003807032.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1 [Pan
paniscus]
gi|119602317|gb|EAW81911.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_e
[Homo sapiens]
gi|194380648|dbj|BAG58477.1| unnamed protein product [Homo sapiens]
Length = 562
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 149/469 (31%), Positives = 222/469 (47%), Gaps = 69/469 (14%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA-------- 273
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECD 175
Query: 274 -----------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEF 322
R K+L + ++ L ++S + + + +P A G S ++
Sbjct: 176 PPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDG 235
Query: 323 MT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERV 380
T + L G + E E + A++ N RE + SPE
Sbjct: 236 STEDTASSLCG------EEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGR 289
Query: 381 PKNCTT-----QTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNE 431
P + TA++ G D + + D + DG + S IDD E+D Y+ NE
Sbjct: 290 PPALGSLLDPLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNE 349
Query: 432 EEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAV 491
E K +W N EYL EQ KEA A K EL
Sbjct: 350 SEARVKAELWMRENAEYLREQREKEARIAKEK------------------ELGIY----- 386
Query: 492 AKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 387 ----KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 431
>gi|380022853|ref|XP_003695250.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Apis
florea]
Length = 631
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 156/575 (27%), Positives = 255/575 (44%), Gaps = 99/575 (17%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C +C P C CG VLED +E F + +G + G FV +
Sbjct: 6 CRNCGSTDIETDPARGDAVCTECGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 63 ---YGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+GA SR+ ++ A + + L + + + + FY +A+ R T+
Sbjct: 66 ATGFGATYHVNGKESRKITLQNAKKGITHLCMQLQLNQ--HCIDTSMNFYKMALNRQLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+ A+C+Y+ CR + +LID S+ L I V+ELG YL+ Q L I +
Sbjct: 124 GRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLKFTQALCIN-----IP 178
Query: 172 QVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDP +++ +F ++L G +V TA I+ MKRD I +GR+PSGLCGAAL ++A
Sbjct: 179 SVDPCLYIMRFANKLEFGEKTHEVSMTALRIVQRMKRDSIHSGRRPSGLCGAALLMAARL 238
Query: 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNG 290
H S +DI+KIV + E+TL KRLIEF +T S +LT+E+FM E +
Sbjct: 239 HEFNRSPADIIKIVKVHESTLRKRLIEFGDTPSSALTLEEFMTVDLEEEQ---------- 288
Query: 291 PKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAE-------- 342
P A + R E + E ++ + ++ +
Sbjct: 289 -----------------DPPAFKIARKKDRERLQRLENIDTEINELQAEIDKQLEDHRLG 331
Query: 343 RERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNE---GEGDHTK 399
+ R K E+ F RES+ + + +P+ ++ + A+N G G +
Sbjct: 332 KTRKRKDEKEDTDRFIRESNLDVIKNYVENDIDDPDNEIQDSESNNANNRLIIGLGPNIA 391
Query: 400 TPG--------------VDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMN 445
+ G V+ E + G + +D+DD E+D Y+ +E+E +K +W ++N
Sbjct: 392 SMGLISANNRENETKESVNINFENNSGEIDVADLDDEELDSYIMSEKEAQFKHNLWNKVN 451
Query: 446 REYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAE 505
EYL +Q ++ ++K+++
Sbjct: 452 AEYL---------------------------IQQKEKEEKRQKEKEEGKPEKKRRRTTKR 484
Query: 506 AKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
K+ PA TA EA +ML +K++SSKINY+VL+ L
Sbjct: 485 NKSQAPANTAGEAIEKMLQEKKISSKINYEVLKSL 519
>gi|156341179|ref|XP_001620678.1| hypothetical protein NEMVEDRAFT_v1g147404 [Nematostella vectensis]
gi|156205891|gb|EDO28578.1| predicted protein [Nematostella vectensis]
Length = 522
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 172/571 (30%), Positives = 258/571 (45%), Gaps = 89/571 (15%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
CS+C P C CG VLED+ +E F +N+ G + G FV + E
Sbjct: 5 CSNCGGSDIDLDPSRGDAVCMGCGSVLEDNIIVSEVQFQENSLGGTSAIGQFVSSEGKEQ 64
Query: 64 GASRER------------LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+ R + K + Q+ + L + + + A FY +AV + T+
Sbjct: 65 FGTPSRGGGTYVHLNHFWSLFKGRKRINQLGHQLQMNQ--HCIDTAYNFYKLAVNKRLTR 122
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GRRT V A+CLYL CR + P +L+DFS+ L I+V+ LG YL+L Q LYI L
Sbjct: 123 GRRTAHVVAACLYLVCRTERTPHMLLDFSDILQIDVFTLGRAYLKLAQELYIN-----LP 177
Query: 172 QVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
+DP +++H+F +L G + V TA +++ MKRDWI GR+PSGLCGAAL V++
Sbjct: 178 AIDPCLYIHRFAHKLELGEKEHDVAVTALRLVSRMKRDWIHHGRRPSGLCGAALLVASRL 237
Query: 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF---------------MARK 275
H S ++VK+V I + T+ KRL EF++T S LTI++F ARK
Sbjct: 238 HSFNRSVREVVKVVRISDTTIRKRLGEFKDTPSSQLTIDEFHKIDLEEEQDPPCFTHARK 297
Query: 276 KELHEGVAANLPNNGPKV----SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 331
K + P +V + ++ +L ++ + E+ M+ S+ G
Sbjct: 298 KAKQQAEDVVNPEITQEVEKFRTEIDNILGIRQEIRN-------QENTEKTMSPSDQRAG 350
Query: 332 GADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERV--PKNCTTQTA 389
G P + VA V AS +S + + D Q E + + K C ++
Sbjct: 351 GESPAS--VACNSVDVAASVSGSS-----TRGDCFASYDMTQDEEGKAILFQKLCCKTSS 403
Query: 390 SNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYL 449
+ H + P + E S + + +DD E+D L E+E K IW E N+EYL
Sbjct: 404 MH-----HHRFPNI--VREESGEELDLTGLDDVELDKCLLTEDEIKVKTKIWMEENKEYL 456
Query: 450 EEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS 509
E+ KE A + Q + K KQ
Sbjct: 457 EKMKEKEEQEAQDR----------------EQGIVKPEKKKRKYKSKNKQ---------- 490
Query: 510 GPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
PA TA EA +ML ++++SSKINY+VL L
Sbjct: 491 -PASTAGEAIEKMLVERKISSKINYEVLRDL 520
>gi|301095599|ref|XP_002896899.1| transcription factor IIIB, putative [Phytophthora infestans T30-4]
gi|262108546|gb|EEY66598.1| transcription factor IIIB, putative [Phytophthora infestans T30-4]
Length = 589
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 149/259 (57%), Gaps = 20/259 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGA-SRER 69
C CG +LE++N + F ++ G + G FV S+ YG SR
Sbjct: 24 VCVSCGTILEENNIVSSVEFQESGGGAHSVVGQFVSATASKAYGNIGTSGRNYGIESRAN 83
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +RQ+ L +G D V A R + +A+ RNFT GR+T+ V A+CLY+ CR+
Sbjct: 84 TLANGKKKIRQIAGMLRLG--DHYVDSAFRLFALALQRNFTHGRKTQTVIAACLYIVCRR 141
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LP 188
+ P LLIDFS+ L INVY LG V+L+ C++L I L +DPS+++H+F +L
Sbjct: 142 ERSPHLLIDFSDKLQINVYVLGGVFLKFCKLLQIH-----LPLIDPSLYIHRFASQLNFA 196
Query: 189 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
G + TA ++A+MKRDWI TGR+PSG+CGAAL ++A + + S D++ +V+I E
Sbjct: 197 GKTHSIATTALRLVATMKRDWIETGRRPSGICGAALLIAARSQSVMCSLHDVMDVVNIGE 256
Query: 249 ATLMKRLIEFENTDSGSLT 267
TL +RL EF T + LT
Sbjct: 257 RTLKQRLYEFSLTPTAQLT 275
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 14/87 (16%)
Query: 393 GEGDHTKTPGVDATTEA-------------SDGS-DNFSDIDDFEVDGYLHNEEEKHYKK 438
G+ +H+ +P A EA +D + D FSD+DD E++ L EE KK
Sbjct: 454 GDTEHSTSPTTSADDEAVSTVIRRRRSRDLADSTVDTFSDLDDDEINSLLLTREEAEKKK 513
Query: 439 IIWEEMNREYLEEQAAKEAAAAAAKAA 465
++WE+MN++Y++EQ K +A A
Sbjct: 514 LLWEKMNKDYIQEQEQKRLLGLSAPDA 540
>gi|383865567|ref|XP_003708244.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Megachile
rotundata]
Length = 656
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 168/606 (27%), Positives = 259/606 (42%), Gaps = 159/606 (26%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-- 61
C +C P C CG VLED +E F + +G + G FV +
Sbjct: 6 CRNCGSTEIETDPARGDAVCTECGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 62 --EYGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
E+GA SR ++ A + + L++ + + + FY +A+ R+ T+
Sbjct: 66 ATEFGATYHINGKESRGITLQNARKGITHLCMQLHLNQ--HCIDTSMNFYKMALNRHLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+ A+C+Y+ CR + +LID S+ L I V+ELG YL+ Q L I +
Sbjct: 124 GRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLRFTQALCIN-----IP 178
Query: 172 QVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDP +++ +F ++L G +V TA ++ MKRD I +GR+PSGLCGAAL ++A
Sbjct: 179 SVDPCLYIMRFANKLEFGEKTHEVSMTALRVVQRMKRDSIHSGRRPSGLCGAALLMAARL 238
Query: 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNG 290
H S +DI+KIV + E+TL KRLIEF +T S +LT+
Sbjct: 239 HEFNRSPADIIKIVKVHESTLRKRLIEFGDTPSSALTL---------------------- 276
Query: 291 PKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA---ERERMV 347
EEFMT+ LE DPPAF+ A +RER+
Sbjct: 277 -----------------------------EEFMTVD--LEEEQDPPAFKAARKKDRERLQ 305
Query: 348 KA----------SAEENSSFERES--------DSPFMSRVDK------------------ 371
K AE + + ++ D+ ++ R D
Sbjct: 306 KLENIDTEINELQAEIDKQLDEQTIGKTRKRKDAAYLEREDTERFVRESNLDVIKSYVEN 365
Query: 372 -VQSPEPERVPKNCTTQ---------------TASNEGEGDHTKTPG-VDATTEASDGSD 414
V P+ + N T+ ++N+ E + T G ++AT E + G
Sbjct: 366 DVDDPDSDLQDSNDTSNRLITGLGPNIASMGLISANDRENE---TNGQMNATFENNSGEI 422
Query: 415 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 474
+ +D+DD E+D Y+ +E+E +K +W ++N EYL +Q KE
Sbjct: 423 DIADLDDEELDSYIMSEKEAQFKHNLWNKVNAEYLNQQKEKEEKRQKE------------ 470
Query: 475 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 534
+ R K+ K PA TA EA +ML +K++SSKINY
Sbjct: 471 ---------KEEGKPEKKRRRTTKRNKTQT------PANTAGEAIEKMLQEKKISSKINY 515
Query: 535 DVLEKL 540
+VL+ L
Sbjct: 516 EVLKSL 521
>gi|425768851|gb|EKV07363.1| Transcription factor TFIIIB complex subunit Brf1, putative
[Penicillium digitatum Pd1]
gi|425770184|gb|EKV08657.1| Transcription factor TFIIIB complex subunit Brf1, putative
[Penicillium digitatum PHI26]
Length = 740
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 169/558 (30%), Positives = 251/558 (44%), Gaps = 62/558 (11%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA---------SRER 69
C CG V+ ++N +E TF ++++G + + G+FV Q+ YG SRE
Sbjct: 75 VCTGCGTVISENNIVSEVTFGESSSGAAVVQGSFVGEDQTHVRSYGPGFQRGGAMESREM 134
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR- 128
+ M Q+ AL I ES A + + +AV NF +GRRT+ V A CLY+ACR
Sbjct: 135 TEQNGNRYMLQLSRALTIPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRR 192
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
Q +LIDF++ L INV++LG Y L L + ++ +DP +++F +L
Sbjct: 193 QNGNTVMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEF 252
Query: 189 GGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G + V A I+ M RDW+TTGR+P+GLCGAAL ++A + + + ++V IV +
Sbjct: 253 GPSLMAVAGEAVRIVQRMNRDWMTTGRRPAGLCGAALILAARMNNFRRTVREVVYIVKVT 312
Query: 248 EATLMKRLIEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPK--VSGMNEVLCKHK 304
E T+ +RL EF +T+SG LT++ F + + E H+ + G K + + E + +
Sbjct: 313 ETTISQRLNEFGSTESGELTVDQFRSVQLENTHDPPSFTRGREGRKSRIKKLPETAAELE 372
Query: 305 DTGKPFACGLCRSCYEEFMTISEGLEGGADP-----PAFQVAERERMVKASAEE-NSSFE 358
D P S E +G A P PA R A+ N E
Sbjct: 373 DNDSP-----TESEAESVQPPRIDADGFAIPSLPIDPALTAISHGRRASVIAKAVNEVVE 427
Query: 359 RESDSPFMSRVDKVQSPEPERVPKNCTTQTASN--------------EGEGDHTKT-PGV 403
+ P S+ + P PE + ++ A E G T P V
Sbjct: 428 DIKNEPVHSKGKGKRQPTPEPSAEQVASEAALEDEMRSMLAQGSSMIESIGSEQPTRPTV 487
Query: 404 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 463
+TE D DD EV L E K+ IW N+EYL Q AK A K
Sbjct: 488 SDSTEI----DAAEFEDDPEVANCLLLPAEVEIKESIWVTENKEYLRTQQAK-----ALK 538
Query: 464 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 523
ALE S + ++ V E + R++ A T EATRRML
Sbjct: 539 RALEESTGGG--APRKPRKRRRGRLGDVTYLEGEGEDGRSSR------ASTPAEATRRML 590
Query: 524 TKKRLSSKINYDVLEKLF 541
++ S KINY +L+ L+
Sbjct: 591 ERRGYSKKINYSLLDTLY 608
>gi|348671349|gb|EGZ11170.1| hypothetical protein PHYSODRAFT_347658 [Phytophthora sojae]
Length = 672
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 149/259 (57%), Gaps = 20/259 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGA-SRER 69
C CG +LE++N + F ++ G + G FV S+ YG SR
Sbjct: 24 VCVSCGTILEENNIVSSIEFQESGGGAHSVVGQFVSATASKSYGNIGTSGRNYGLESRAN 83
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +RQ+ L +G D V A R + +A+ RNFT GR+T+ V A+CLY+ CR+
Sbjct: 84 TLANGKKKIRQIAGMLRLG--DHYVDSAFRLFALALQRNFTHGRKTQTVIAACLYIVCRR 141
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LP 188
+ P LLIDFS+ L INVY LG V+L+ C++L I L +DPS+++H+F +L
Sbjct: 142 ERSPHLLIDFSDKLQINVYVLGGVFLKFCKLLQIH-----LPLIDPSLYIHRFASQLNFA 196
Query: 189 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
G + TA ++A+MKRDWI TGR+PSG+CGAAL ++A + + S D++ +V+I E
Sbjct: 197 GKTHSIATTALRLVATMKRDWIETGRRPSGICGAALLIAARSQSVMCSLHDVMDVVNIGE 256
Query: 249 ATLMKRLIEFENTDSGSLT 267
TL +RL EF T + LT
Sbjct: 257 RTLKQRLYEFSLTPTAQLT 275
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 392 EGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEE 451
E EGD D +A + D FSD+DD E++ L EE KK++WE+MN+++++E
Sbjct: 557 ENEGD-------DEKGDAEEAVDTFSDLDDDEINSLLLTREEAEKKKLLWEKMNKDFIQE 609
Query: 452 QAAKEAAAAAAKAA 465
Q K +A A
Sbjct: 610 QEQKRLLGLSAPDA 623
>gi|255942361|ref|XP_002561949.1| Pc18g01030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586682|emb|CAP94327.1| Pc18g01030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 739
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 167/555 (30%), Positives = 254/555 (45%), Gaps = 56/555 (10%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA---------SRER 69
C CG V+ ++N +E TF ++++G + + G+FV Q+ YG SRE
Sbjct: 75 VCTGCGTVISENNIVSEVTFGESSSGAAVVQGSFVGEDQTHVRSYGPGFQRGGAMESREM 134
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR- 128
+ M Q+ AL I ES A + + +AV NF +GRRT+ V A CLY+ACR
Sbjct: 135 TEQNGNRYMLQLSRALTIPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRR 192
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
Q +LIDF++ L INV++LG Y L L + ++ +DP +++F +L
Sbjct: 193 QNGNTVMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEF 252
Query: 189 GGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G + V A I+ M RDW+TTGR+P+GLCGAAL ++A + + + ++V IV +
Sbjct: 253 GPSLMAVAGEAVRIVQRMNRDWMTTGRRPAGLCGAALILAARMNNFRRTVREVVYIVKVT 312
Query: 248 EATLMKRLIEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPK--VSGMNEVLCKHK 304
E T+ +RL EF +T+SG LT++ F + + E H+ + G K V + E + +
Sbjct: 313 ETTISQRLNEFGSTESGELTVDQFRSVQLENTHDPPSFTRGREGRKSRVKRLPETAAELE 372
Query: 305 DTGKPFACGLCRSCYEEFMTISEGLEGGADP-----PAFQVAERERMVKASAEE-NSSFE 358
D P S E +G A P PA R A+ N E
Sbjct: 373 DDDSP-----TESEAESVQPPRIDADGFAIPSLPIDPALTATSHGRRASVIAKAVNEVVE 427
Query: 359 RESDSPFMSRVDKVQSPEPERVPKNCTTQTA------------SNEGEGDHTKTPGVDAT 406
+ P S+ + P PE + ++ A SN E ++ P
Sbjct: 428 DIKNEPVHSKGKGKREPTPEPSAEQVASEAALEDEMRSMLAQGSNMIESVGSEQPPRPTV 487
Query: 407 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 466
+++++ D DD EV L E K+ IW N+EYL Q AK A K AL
Sbjct: 488 SDSAE-IDAAEFEDDPEVANCLLLPAEVEIKESIWVTENKEYLRAQQAK-----ALKRAL 541
Query: 467 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 526
E S + ++ V E + R++ A T EATRRML ++
Sbjct: 542 EESTGGG--TPRKPRKRRRGRLGDVTYLEGEGEDGRSSR------ASTPAEATRRMLERR 593
Query: 527 RLSSKINYDVLEKLF 541
S KINY +L+ L+
Sbjct: 594 GYSKKINYSLLDTLY 608
>gi|452820163|gb|EME27209.1| RNA polymerase III transcription factor IIIB [Galdieria
sulphuraria]
Length = 547
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 153/281 (54%), Gaps = 18/281 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C C H C +CG ++E++ +E TFV+ G S + G FV +
Sbjct: 26 CPHCGSTELEHDAAQGNTVCTQCGCIVEENTIVSEVTFVEGPGGHSSVVGQFVDSSGYVP 85
Query: 59 -----IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGR 113
I SRE + ++ AL++ S E A R + +A+ NF +GR
Sbjct: 86 SSGVIIPGLSKESREATRNNGRKIIAEVVGALHLNPSQE--EQAFRMFLLAIEHNFLQGR 143
Query: 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
+ V ASCLY+ CR++ P LLIDFS+YL NVY+LG +L+ ++L ++ L +
Sbjct: 144 KASNVCASCLYIVCRREKTPHLLIDFSDYLQTNVYDLGRTFLKFARILNLS-----LPII 198
Query: 174 DPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
DPS+++H+F +L V +A ++A MKRDWI TGR+PSGLCGAAL+V+A HG
Sbjct: 199 DPSLYIHRFASKLGFEEKTHAVATSALRLIARMKRDWIHTGRRPSGLCGAALFVAAKMHG 258
Query: 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 273
S+ +IV +V I + TL KRL+E E T S LT ++ A
Sbjct: 259 FYRSQREIVNVVRIGDVTLRKRLLELEETPSALLTADEIDA 299
>gi|294660130|ref|XP_462571.2| DEHA2G23738p [Debaryomyces hansenii CBS767]
gi|199434484|emb|CAG91084.2| DEHA2G23738p [Debaryomyces hansenii CBS767]
Length = 583
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 154/583 (26%), Positives = 264/583 (45%), Gaps = 93/583 (15%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG--------ASRERLME 72
+ C RCG V ++ +E F ++++G + + G V Q+ SRE+ +
Sbjct: 28 ISCSRCGTVQVENPIVSEVQFGESSSGAAMVQGAMVGADQARATFNGRQNAMESREQTLA 87
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+R++ AL I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 88 NGKKKIRRIATALKI--PDYIADAAGAWFRLALTNNFVQGRRSQNVLAACLYVACRKEKT 145
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGN 191
+LIDFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L N
Sbjct: 146 HHMLIDFSSRLQISVYSLGATFLKMVKTLHITS----LPLADPSLFIQHFAEKLNFRDQN 201
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
KV A + M DWI GR+P+G+ GA + ++A + + + ++IV + H+ E TL
Sbjct: 202 SKVIKDAVKLAQRMANDWIHEGRRPAGVAGACVLLAARMNNFRRTHAEIVAVAHVAEETL 261
Query: 252 MKRLIEFENTDSGSLTIEDF-------------MARKKELHEGVAANLPNNGPKVSGMNE 298
+RL EF+ T SG LT+E F R ++L +A L + + E
Sbjct: 262 QRRLNEFKKTKSGELTVESFRESLDTEVSNPPSFDRNRDLELKLAKQLKDKEAALKKFEE 321
Query: 299 VLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAF--QVAERERMVKASAEENSS 356
L K +D + EE T + L+ + Q +++++++K ++
Sbjct: 322 -LAKSRDNTPDYDSD---DVSEEGSTRKQDLQDIIEDSRLKNQQSKKDKLLKTILKDCDL 377
Query: 357 FERESDSPFMSRVDKVQSPEPER----VPKNCTTQTASNEGEGDHTKTPGV--------D 404
E E S ++R+ + Q + +P +T E + D K + D
Sbjct: 378 SENEI-SEQLARIIQNQKKSLQNSMYMIPSEL-QRTTDEEEKIDLDKPRNLVKNLPKTQD 435
Query: 405 ATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKA 464
++ S F D+DD E+D +L E+E K+ +W +N +++ Q K
Sbjct: 436 LLSKISSDPKEFDDLDDSELDHFLLTEDEYKLKERLWTGLNHDFIVAQEKKRLK------ 489
Query: 465 ALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKN---------------- 508
Q EL + A +RK+++Q + + +
Sbjct: 490 -------------QETDELTGNTSGA---NRKKRRQGKNSGVEGIDGDFVNEMGINDALT 533
Query: 509 -------SGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 544
+G TA ++ +RML+KK S KINY L LFDD+
Sbjct: 534 GIGVDEATGEPLTAADSAKRMLSKKSFSKKINYATLGDLFDDN 576
>gi|392597143|gb|EIW86465.1| BRF1-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 639
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/285 (37%), Positives = 163/285 (57%), Gaps = 22/285 (7%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT-- 58
M C+ C V + C +CG V+E++ E TF + +AG + + G++V
Sbjct: 1 MPTCTDCGGTVIEYNDAAGNGFCVKCGTVVEENTIVNEVTFGETSAGAAMVQGSYVGQGS 60
Query: 59 ----IQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
+ +G SRE+ + A ++ +AL + SD + A R Y +AV F
Sbjct: 61 THARMSGPFGNRGSSESREQTIANASRKIQSFASALRL--SDIVALAATRLYTLAVEHKF 118
Query: 110 TKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
TKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG +YLQL Q L +
Sbjct: 119 TKGRKSINVAAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHIYLQLVQTLNLR---- 174
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L VDPS ++ +F+ LL G++ KV A ++ RDW+T GR+P+G+CGAAL +
Sbjct: 175 -LPVVDPSHYISRFS-ALLEFGDETHKVATDAVRLVQRFDRDWMTRGRRPAGICGAALLL 232
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+A + + S +IV++V I + TL KRL EF T SGSLT+ DF
Sbjct: 233 AARMNNFRRSIEEIVQVVKIADTTLKKRLEEFRKTPSGSLTLADF 277
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 27/131 (20%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D ++D+ E+DG++ +E+E K+ IW EMNREYLE AAK
Sbjct: 444 DELMNLDEDELDGFILSEDEVRLKERIWVEMNREYLEALAAK------------------ 485
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 532
A++L + R++ K + SG TA E+ + ++ K R S +I
Sbjct: 486 ------AEQLEKGTTTVKTRKRRKTNTKPRDASTPSG--STAAESVQNLIKKNSRYSKRI 537
Query: 533 NYDVLEKLFDD 543
NYD L+ LF D
Sbjct: 538 NYDALKNLFVD 548
>gi|340722869|ref|XP_003399823.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Bombus
terrestris]
Length = 659
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 168/605 (27%), Positives = 250/605 (41%), Gaps = 156/605 (25%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C +C P C CG VLED +E F + +G + G FV +
Sbjct: 6 CRNCGSTNIETDPARGDAVCTDCGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 63 ---YGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+GA SR ++ A + + L + + + + FY +A+ R T+
Sbjct: 66 ATGFGATYHVNGKESRGITLQNARKGITHLCMQLQLNQ--HCIDTSMNFYKMALNRQLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+ A+C+Y+ CR + +LID S+ L I V+ELG YL+ Q L I +
Sbjct: 124 GRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLRFTQALCIN-----IP 178
Query: 172 QVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDP +++ +F ++L G +V TA ++ MKRD I +GR+PSGLCGAAL ++A
Sbjct: 179 SVDPCLYIMRFANKLEFGEKTHEVSMTALRVVQRMKRDSIHSGRRPSGLCGAALLMAARL 238
Query: 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNG 290
H S +DI+KIV + E+TL KRLIEF +T S +LT+
Sbjct: 239 HEFNRSPADIIKIVKVHESTLRKRLIEFGDTPSSALTL---------------------- 276
Query: 291 PKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA---ERERM- 346
EEFMT+ LE DPPAF+ A +RER+
Sbjct: 277 -----------------------------EEFMTVD--LEEEQDPPAFKAARKKDRERLQ 305
Query: 347 --------------VKASAEEN-----------SSFERESDSPFM--SRVDKV------- 372
+ EE+ +S ER F+ S +D +
Sbjct: 306 RLNIDTEINELQAEIDKQLEEHRLGKMKKRKDAASIERADTDRFIRESNLDVIKHYVGND 365
Query: 373 --------QSPEPERV---------PKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDN 415
Q E + P + S + TK P V+ E G +
Sbjct: 366 VDDPDSDFQDSEMNNINDRLITGLGPNIASMGLISTNDRENETKDP-VNTNFENDTGEID 424
Query: 416 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 475
+D+DD E+D Y+ +E+E +K +W ++N EYL +Q KE
Sbjct: 425 VADLDDEELDSYIMSEKEAQFKHNLWNKVNAEYLNQQKEKEERRQKE------------- 471
Query: 476 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 535
+ R K+ KN PA TA EA +ML +K++SSKINY+
Sbjct: 472 --------KEEGKPEKKRRRTTKRN------KNQVPANTAGEAIEKMLQEKKISSKINYE 517
Query: 536 VLEKL 540
VL+ L
Sbjct: 518 VLKSL 522
>gi|159127363|gb|EDP52478.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus fumigatus A1163]
Length = 749
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 161/560 (28%), Positives = 259/560 (46%), Gaps = 49/560 (8%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV Q+ YG
Sbjct: 67 DGQKVCSGCGTVISEANIVSEVTFGETSSGAAVVQGTFVGEDQTHVRSYGPGFQRGGAME 126
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+
Sbjct: 127 SREITEQNGTRYINQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 184
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L +NV++LG Y L L + ++ +DP +++F
Sbjct: 185 ACRRQDGNTVMLIDFADVLMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAK 244
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 245 QLEFGTATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYV 304
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCK 302
V + E T+ +RL EF +T+S LT++ F + + E H+ + G K S V K
Sbjct: 305 VKVTEITINQRLNEFSSTESAELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSVKRK 362
Query: 303 HKDTGKPFACGLCRSCYEEFMTI-SEGLEGGADP--PAFQVAER-ERMVKASAEENSSFE 358
DT + E + ++G + P PA A+ R ++ N
Sbjct: 363 ASDTAAAIEGNTQDATPAEPRRLDADGFAIPSLPIDPALTTADSGRRRASVTSVLNKVVS 422
Query: 359 RESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEG-EGDHTK--TPGVDATTEASDGSDN 415
+ +++ + +P+ ++P Q AS E E + T + G + + G +
Sbjct: 423 EVGEEAAIAKSARPAAPKRPKLPPPTPEQIASEEALENEMTALLSKGSNMIESVASGREQ 482
Query: 416 FSDI------------DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 463
+ + DD EV L + E K+ IW N++YL Q AK A A+
Sbjct: 483 ENKVSDRAEIDASEFEDDPEVANCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAE 542
Query: 464 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 523
A + G++ ++ V + + + S PA EATRRML
Sbjct: 543 A-------DSQPGMRKPRKRRRGRLGDVTYLEGDGEDADGRSTRASTPA----EATRRML 591
Query: 524 TKKRLSSKINYDVLEKLFDD 543
++ S KINY +LE LF D
Sbjct: 592 ERRGFSKKINYRLLESLFGD 611
>gi|119491136|ref|XP_001263190.1| transcription factor TFIIIB complex subunit Brf1, putative
[Neosartorya fischeri NRRL 181]
gi|119411350|gb|EAW21293.1| transcription factor TFIIIB complex subunit Brf1, putative
[Neosartorya fischeri NRRL 181]
Length = 752
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 161/560 (28%), Positives = 258/560 (46%), Gaps = 49/560 (8%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV Q+ YG
Sbjct: 74 DGQKVCSGCGTVISEANIVSEVTFGETSSGAAVVQGTFVGEDQTHVRSYGPGFQRGGAME 133
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+
Sbjct: 134 SREITEQNGTRYINQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 191
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L +NV++LG Y L L + ++ +DP +++F
Sbjct: 192 ACRRQDGNTVMLIDFADVLMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAK 251
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 252 QLEFGTATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYV 311
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCK 302
V + E T+ +RL EF +T+S LT++ F + + E H+ + G K S V K
Sbjct: 312 VKVTEITINQRLNEFSSTESAELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSVKRK 369
Query: 303 HKDTGKPFACGLCRSCYEEFMTI-SEGLEGGADP--PAFQVAER-ERMVKASAEENSSFE 358
DT + + E + ++G + P PA A+ R ++ N
Sbjct: 370 ASDTAAEIEGDMQDATPAEPRRLDADGFAIPSLPIDPALTTADSGRRRASVTSVLNEVVS 429
Query: 359 RESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEG-EGDHTK--TPGVDATTEASDGSDN 415
+++ + +P+ ++P Q AS E E + T + G + + G +
Sbjct: 430 EVGQESAIAKSARPAAPKRPKLPPPTPDQIASEEALENEMTALLSKGSNMIESVASGQEQ 489
Query: 416 FSDI------------DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 463
+ + DD EV L + E K+ IW N++YL Q AK A A+
Sbjct: 490 ENKVSDRAEIDASEFEDDPEVANCLLSSAEVEIKERIWVHENKDYLRTQQAKALKRALAE 549
Query: 464 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 523
A + G++ ++ V + + S PA EATRRML
Sbjct: 550 A-------DSQPGMRKPRKRRRGRLGDVTYLEGDGDDADGRSTRASTPA----EATRRML 598
Query: 524 TKKRLSSKINYDVLEKLFDD 543
++ S KINY +LE LF D
Sbjct: 599 ERRGFSKKINYRLLESLFGD 618
>gi|428671958|gb|EKX72873.1| transcription factor IIIb subunit, putative [Babesia equi]
Length = 515
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 147/520 (28%), Positives = 238/520 (45%), Gaps = 71/520 (13%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR------ 57
C+ C + +L C CG VL+++ + + +N G S L G F+
Sbjct: 6 CTYCGSQDLESVKHLGELVCQDCGAVLQENTVLEDLQYSENRLGSSTLVGQFIPVSGIRP 65
Query: 58 -TIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
T+ S SR+ ++++ D++ ++ AL + S E ++ A+ Y +AV RNFT GR
Sbjct: 66 GTLSSGSLPSRDHVLKRGCDNIERI--ALRLNLSPEHINKAQAIYKLAVQRNFTMGRNNL 123
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V + CLY CR++ P LLIDFS+ L V +G ++++L ++L+I+ + VDPS
Sbjct: 124 HVASCCLYTVCRREKTPHLLIDFSDILQTPVKTIGQIFMKLVRMLHIS-----VPNVDPS 178
Query: 177 IFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
IF +F +L N +KV T I+ +M RDW+ TGR+P+GLCGAAL V+A HG+
Sbjct: 179 IFFERFASKLYLKDNIQKVISTGVRIIQAMNRDWLCTGRRPTGLCGAALVVAARFHGISL 238
Query: 236 SKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSG 295
D+ +V I T+MKRL EF++T + L +F K +L LPN
Sbjct: 239 PAEDVAAVVRISHPTIMKRLSEFKDTCAAHLKCSEF--EKVDLD-----TLPNIKLPPCL 291
Query: 296 MNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENS 355
+++ K + K L+G +D AE + K AE +S
Sbjct: 292 ISKYAAKERKYAK-------------------SLDGRSDVSTTDTAEYDLRGKDYAETDS 332
Query: 356 S---FERESDSPFMSRVDKVQSPEPERVPKN--CTTQ--------TASNEGEGDHTKTPG 402
+ F+R+SD P +S + P +P + C Q A + E P
Sbjct: 333 TYSDFDRQSD-PCLSENSPILGPINVNIPTDVLCNDQPTAAQINNIAQSILENFKVNQPS 391
Query: 403 V------DATTEASDGSDNFSDIDDFEVDG-YLHNEEEKHYKKIIWEEMNREYLE----- 450
+ + T D + D +D +V + E EK K +W+E+ ++ ++
Sbjct: 392 IGGLCKFNETESCEDSELSSDDEEDIQVFAEMILPESEKESKTKLWDEITKDIMQKVMRR 451
Query: 451 --EQAAKEAAAAAAKAA--LEASYKNCPEGLQAAQELAAA 486
E+ +E + A K Y + PE AA+ A
Sbjct: 452 QKERKKREESGQAIKKRKYTRRKYMDYPEANNAAESTKMA 491
>gi|70999253|ref|XP_754348.1| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
fumigatus Af293]
gi|66851985|gb|EAL92310.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus fumigatus Af293]
Length = 748
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 161/560 (28%), Positives = 259/560 (46%), Gaps = 49/560 (8%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV Q+ YG
Sbjct: 67 DGQKVCSGCGTVISEANIVSEVTFGETSSGAAVVQGTFVGEDQTHVRSYGPGFQRGGAME 126
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+
Sbjct: 127 SREITEQNGTRYINQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 184
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L +NV++LG Y L L + ++ +DP +++F
Sbjct: 185 ACRRQDGNTVMLIDFADALMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAK 244
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 245 QLEFGTATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYV 304
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCK 302
V + E T+ +RL EF +T+S LT++ F + + E H+ + G K S V K
Sbjct: 305 VKVTEITINQRLNEFSSTESAELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSVKRK 362
Query: 303 HKDTGKPFACGLCRSCYEEFMTI-SEGLEGGADP--PAFQVAER-ERMVKASAEENSSFE 358
DT + E + ++G + P PA A+ R ++ N
Sbjct: 363 ASDTAAAIEGNTQDATPAEPRRLDADGFAIPSLPIDPALTTADSGRRRASVTSVLNKVVS 422
Query: 359 RESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEG-EGDHTK--TPGVDATTEASDGSDN 415
+ +++ + +P+ ++P Q AS E E + T + G + + G +
Sbjct: 423 EVGEEAAIAKSARPAAPKRPKLPPPTPEQIASEEALENEMTALLSKGSNMIESVASGREQ 482
Query: 416 FSDI------------DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 463
+ + DD EV L + E K+ IW N++YL Q AK A A+
Sbjct: 483 ENKVSDRAEIDASEFEDDPEVANCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAE 542
Query: 464 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 523
A + G++ ++ V + + + S PA EATRRML
Sbjct: 543 A-------DSQPGMRKPRKRRRGRLGDVTYLEGDGEDADGRSTRASTPA----EATRRML 591
Query: 524 TKKRLSSKINYDVLEKLFDD 543
++ S KINY +LE LF D
Sbjct: 592 ERRGFSKKINYRLLESLFGD 611
>gi|409074474|gb|EKM74871.1| hypothetical protein AGABI1DRAFT_47247, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 662
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 161/282 (57%), Gaps = 22/282 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
CS C V + C CG V+E++ E F + A G + + G+FV
Sbjct: 7 CSDCGGTVIEYDQAAGNGFCVTCGTVVEENTIVNEIAFGETANGTAIVQGSFVAQGATHA 66
Query: 59 -IQSEYGA-----SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+ YG SRE+ +E A ++ + + L + E +V A+R Y +AV FTKG
Sbjct: 67 RMGGPYGNRSSSDSREQTIENATKKIQNIASILRLSEV--VVLAARRMYTLAVEHKFTKG 124
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q+L + L
Sbjct: 125 RKSLNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQILNLR-----LP 179
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS ++ +F LL G++ KV A ++ RDW+T GR+P+G+CGAAL ++A
Sbjct: 180 LVDPSHYISRFA-ALLEFGDETHKVATDAVRLVQRFDRDWMTKGRRPAGICGAALLLAAR 238
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + S +IV++V I + TL KRL EF+ T SGSLT+ DF
Sbjct: 239 MNNFRRSIEEIVQVVKIADTTLKKRLDEFKATPSGSLTLADF 280
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 29/143 (20%)
Query: 413 SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 472
+D +D+ E++ ++ +++E K+ +W E+NR+YLE AAK
Sbjct: 458 ADELMGLDEEELNRFILSDDEVRIKERVWVELNRDYLEAIAAK----------------- 500
Query: 473 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSK 531
G Q + A A ++ +++ + R A + TA E+ R ++ K + S +
Sbjct: 501 ---GYQ-----QDSTATAKSRKKRKSNKPRDATTPS---GSTAAESVRNLIKKNPKYSKR 549
Query: 532 INYDVLEKLFDDSVCLYSISICL 554
INYD L+ LF D+ S S L
Sbjct: 550 INYDALKDLFVDTNTPPSFSQSL 572
>gi|387597044|gb|EIJ94664.1| transcription initiation factor IIB [Nematocida parisii ERTm1]
Length = 448
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 155/253 (61%), Gaps = 12/253 (4%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMR--- 79
C CG V+E+ ++ F ++ G S L G +V T ++ S + + +R
Sbjct: 22 CTSCGLVIEESTIVSDVQFAQDTKGSSILQGQYVSTGDTKKLVSGKFITTNHITTIRGIA 81
Query: 80 -QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 138
+ AL IGES ++ A R+Y +++ NFTKGR+T+ + A+CLY+ CR++ P +L+D
Sbjct: 82 KSIGEALGIGESQ--INSAMRWYNLSLQFNFTKGRKTQVLLAACLYITCREEETPHMLVD 139
Query: 139 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTA 198
F+ L INV+++G+++L+L ++L I + VDPS+F+ +F +L N+ V TA
Sbjct: 140 FAYILRINVFKIGSIFLKLIRLLNIT-----MPLVDPSLFVPRFCSKL-NLNNQNVGKTA 193
Query: 199 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
++A M RDWI GRKP+G+CGAA+ +S+ HG + + ++ +V +CEAT+ KRL+E
Sbjct: 194 LRLIARMDRDWIVIGRKPAGICGAAILISSRIHGTERTVEEVANVVKVCEATINKRLMEL 253
Query: 259 ENTDSGSLTIEDF 271
+ T + +L+I +F
Sbjct: 254 KETATANLSISEF 266
>gi|387593387|gb|EIJ88411.1| transcription initiation factor IIB [Nematocida parisii ERTm3]
Length = 466
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 155/253 (61%), Gaps = 12/253 (4%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMR--- 79
C CG V+E+ ++ F ++ G S L G +V T ++ S + + +R
Sbjct: 22 CTSCGLVIEESTIVSDVQFAQDTKGSSILQGQYVSTGDTKKLVSGKFITTNHITTIRGIA 81
Query: 80 -QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 138
+ AL IGES ++ A R+Y +++ NFTKGR+T+ + A+CLY+ CR++ P +L+D
Sbjct: 82 KSIGEALGIGESQ--INSAMRWYNLSLQFNFTKGRKTQVLLAACLYITCREEETPHMLVD 139
Query: 139 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTA 198
F+ L INV+++G+++L+L ++L I + VDPS+F+ +F +L N+ V TA
Sbjct: 140 FAYILRINVFKIGSIFLKLIRLLNIT-----MPLVDPSLFVPRFCSKL-NLNNQNVGKTA 193
Query: 199 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
++A M RDWI GRKP+G+CGAA+ +S+ HG + + ++ +V +CEAT+ KRL+E
Sbjct: 194 LRLIARMDRDWIVIGRKPAGICGAAILISSRIHGTERTVEEVANVVKVCEATINKRLMEL 253
Query: 259 ENTDSGSLTIEDF 271
+ T + +L+I +F
Sbjct: 254 KETATANLSISEF 266
>gi|83770830|dbj|BAE60963.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870227|gb|EIT79413.1| transcription initiation factor TFIIIB, Brf1 subunit [Aspergillus
oryzae 3.042]
Length = 734
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 165/563 (29%), Positives = 263/563 (46%), Gaps = 52/563 (9%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV Q+ YG
Sbjct: 52 DGQKVCSGCGTVISEANIVSEVTFGETSSGAAIVQGTFVGEDQTHVRSYGPGFQRGGGAE 111
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 112 SREITEQNGNRYINQLARALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 169
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L + L + ++ +DP +++F
Sbjct: 170 ACRRQDGNTVMLIDFADVLMINVFKLGRTYKALLEELRLGGNVFLMNPIDPESLIYRFAK 229
Query: 185 RLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 230 QLEFGAATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYV 289
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCK 302
V + E T+ +RL EF T+SG LT++ F + + E H+ + G K S +
Sbjct: 290 VKVTEITISQRLNEFGATESGELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSFKRR 347
Query: 303 HKDTGKPFACGLCRSC--------YEEFMTISEGLEGGADP--PAFQVAERERMVKASAE 352
+T L + ++ ++G + P PA A+ ER + ++
Sbjct: 348 PTETAADIEGDLTDAATTPSNIAPQQQKRVDADGFAIPSLPIDPALIAADGERRMSTTSV 407
Query: 353 ENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEG-EGDHTK--TPG---VDAT 406
E+ ++P + + + +P Q AS E E + T T G +++T
Sbjct: 408 ESEIAPEVGENPGKPARGRPKGSKARPLPTPTPDQIASEEALENEMTAYLTKGSNMIEST 467
Query: 407 TEASDGSDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAA 460
T ++ID D EV L + E K+ IW N++YL Q AK
Sbjct: 468 TVPRKAVSESAEIDEAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK----- 522
Query: 461 AAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 520
A K ALE + + G+ ++ V + + + + S PA EATR
Sbjct: 523 ALKRALEEA--DSQPGMHKPRKRRRGRLGDVTYLQGDGEDGDGRSTRASTPA----EATR 576
Query: 521 RMLTKKRLSSKINYDVLEKLFDD 543
RML ++ S KINY +LE LF +
Sbjct: 577 RMLERRGFSKKINYRLLESLFGE 599
>gi|254568370|ref|XP_002491295.1| TFIIIB B-related factor [Komagataella pastoris GS115]
gi|238031092|emb|CAY69015.1| TFIIIB B-related factor [Komagataella pastoris GS115]
gi|328352187|emb|CCA38586.1| Transcription factor IIIB 70 kDa subunit [Komagataella pastoris CBS
7435]
Length = 568
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 152/573 (26%), Positives = 265/573 (46%), Gaps = 80/573 (13%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------SRERL 70
S L C CG V E++ +E +F + A+G + + G FV + Q+ +G SRE+
Sbjct: 26 SDLACVECGTVSEENPIVSEVSFGETASGAATVQGAFVGSDQARANFGNNRGSLDSREQT 85
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ K ++ + L I +D I A ++ +A+ NF +GRR++ V A+CLY+ACR+
Sbjct: 86 LNKGKRRIKTVAAVLGI--ADYISDAAYLWFRLALTNNFVQGRRSQNVVAACLYIACRKV 143
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 190
+LIDFS+ L I+VY +GA +L++ + L+I++ L DPS+F+ F ++L G
Sbjct: 144 KTHHMLIDFSSRLQISVYSVGATFLKMVKTLHISN----LPLADPSLFIQHFAEQLNFGN 199
Query: 191 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
+K KV A + M DWI GR+P+G+ GA L ++A + + + +I + I E+
Sbjct: 200 SKIKVIKDAVKLAHRMADDWIHEGRRPAGIAGACLMLAARMNNFRRTHLEIAAVAKIGES 259
Query: 250 TLMKRLIEFENTDSGSLTIEDF-----------------MARKKELHEGVAANLPNNGPK 292
T+ KRL EF+NT++ L+I++F ++K + + + N + K
Sbjct: 260 TIQKRLNEFKNTNASKLSIDEFRKATNIESTAPPSYTSNRIKEKAIQQMINHNNKYSEEK 319
Query: 293 VSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMV----- 347
+ MN +L + + + + + ++ + + P +V E +R +
Sbjct: 320 ETVMNFILKDSEISSEEIRTYILKIQKQQREDLKRKVNQVVSPSPGEVGEIQRSIDEDED 379
Query: 348 ----------KASAEENS---SFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGE 394
K NS SFER+ D+ + E R PKN + +
Sbjct: 380 DDDESEDESDKDGNTANSIYNSFERQQQ-------DQARLIELNR-PKNLHKLPTTGDLL 431
Query: 395 GDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAA 454
G P +N D+DD E++G+L E+E K+ +W +N ++L EQ
Sbjct: 432 GKIKSDP------------ENLEDVDDEELEGFLLTEDESRIKERVWVGLNHDFLIEQEK 479
Query: 455 KEAAAAAAKAALEASYKNC------PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKN 508
+ + K A + K +GL + A+ + + Q + +
Sbjct: 480 RRLKEESDKLAGHTTIKRRRKKNIDDDGLGIPKTELTEFASGLDPAALGLQ----SSINS 535
Query: 509 SGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
G +AL + + ML KK S K+NY +E LF
Sbjct: 536 IGEGSSALSSAKSMLQKKSYSKKLNYAAVENLF 568
>gi|115391595|ref|XP_001213302.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114194226|gb|EAU35926.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 756
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 167/568 (29%), Positives = 266/568 (46%), Gaps = 61/568 (10%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY----------GA-- 65
D Q C CG V+ + N +E TF ++++G + + G FV QS GA
Sbjct: 73 DGQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSHVRSFGPGFQRGGAME 132
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALN+ ES + A + + +AV NF +GRRT+ V A CLY+
Sbjct: 133 SREITEQNGSRYINQLSRALNVPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 190
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LID ++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 191 ACRRQDGNTVMLIDLADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAK 250
Query: 185 RLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G + +V A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 251 QLEFGPSTMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYV 310
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCK 302
V + E T+ +RL EF +T+SG LT++ F + + E H+ + +G K S
Sbjct: 311 VKVTEITISQRLNEFSSTESGELTVDQFRSVQLENAHDPPSFTRARDGRKPS-----RSF 365
Query: 303 HKDTGKPFACGLCRSCYEEFMTISEG----------LEGGADP-----PAFQVAERERMV 347
K G A + ++ T S +G A P PA E ++
Sbjct: 366 TKRGGAETAAEIEGDLHDVNATASSSRQASQAKRVDADGFAIPPLPIDPALTPTESDQRP 425
Query: 348 KASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEG-EGDHTK-----TP 401
+ SA E E + +S ++ ++ + +++P Q AS E E + T +
Sbjct: 426 ERSAVEELVAEMDEES-ARAKSERAKGSRSKQLPVPSADQVASEEALENEMTALLSKGSN 484
Query: 402 GVDATTEASDGSDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 455
+++T E + +DID D EV L + E K+ IW N++YL Q AK
Sbjct: 485 MIESTVEPKKVVSDSADIDETEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK 544
Query: 456 EAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTA 515
A A+A + G+ ++ V E + + S PA
Sbjct: 545 ALKRALAEA-------DSGPGMHKPRKRRRGRMGDVTYLEGEGEDGDGRSTRASTPA--- 594
Query: 516 LEATRRMLTKKRLSSKINYDVLEKLFDD 543
EATRRML ++ S KINY +LE LF +
Sbjct: 595 -EATRRMLERRGFSKKINYRLLESLFGE 621
>gi|426192806|gb|EKV42741.1| hypothetical protein AGABI2DRAFT_78178, partial [Agaricus bisporus
var. bisporus H97]
Length = 590
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 161/282 (57%), Gaps = 22/282 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
CS C V + C CG V+E++ E F + A G + + G+FV
Sbjct: 1 CSDCGGTVIEYDQAAGNGFCVTCGTVVEENTIVNEIAFGETANGAAIVQGSFVAQGATHA 60
Query: 59 -IQSEYGA-----SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+ YG SRE+ +E A ++ + + L + E +V A+R Y +AV FTKG
Sbjct: 61 RMGGPYGNRSSSDSREQTIENATKKIQNIASILRLSEV--VVLAARRMYTLAVEHKFTKG 118
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q+L + L
Sbjct: 119 RKSLNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQILNLR-----LP 173
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS ++ +F LL G++ KV A ++ RDW+T GR+P+G+CGAAL ++A
Sbjct: 174 LVDPSHYISRFA-ALLEFGDETHKVATDAVRLVQRFDRDWMTKGRRPAGICGAALLLAAR 232
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + S +IV++V I + TL KRL EF+ T SGSLT+ DF
Sbjct: 233 MNNFRRSIEEIVQVVKIADTTLKKRLDEFKATPSGSLTLADF 274
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 28/143 (19%)
Query: 413 SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 472
+D +D+ E++ ++ +E+E K+ +W E+NR+YLE A + L +S K
Sbjct: 385 ADELMGLDEEELNRFILSEDEVRIKERVWVELNRDYLEAIAGSIPGSRYIFHMLTSSQK- 443
Query: 473 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSK 531
RK + + A S TA E+ R ++ K + S +
Sbjct: 444 ----------------------RKSNKPRDATTPSGS----TAAESVRNLIKKNPKYSKR 477
Query: 532 INYDVLEKLFDDSVCLYSISICL 554
INYD L+ LF D+ S S L
Sbjct: 478 INYDALKDLFVDTNTPPSFSQSL 500
>gi|391339520|ref|XP_003744096.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Metaseiulus occidentalis]
Length = 689
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 147/260 (56%), Gaps = 17/260 (6%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------RTIQSEYG---ASRERLME 72
C CG VLED +E F + A G S+ G V R YG A+RE +
Sbjct: 25 VCTGCGVVLEDTLIVSEVQFEETAGGGSRAIGQMVTGSGGARIQGFRYGGSKAARELTIA 84
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ M+ + + L + +D+IV A R Y +A+ RNFT GRR V A+C+Y+ CR K
Sbjct: 85 RVRTTMKLIADQLQL--NDDIVESAMRLYEMALIRNFTVGRRRSHVLAACIYITCRLKES 142
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGN 191
+L+D S+ + +NVYELG Y +L Q L+I + +DP I++ ++ +L L G
Sbjct: 143 SLMLLDISDVVQVNVYELGRTYTKLAQELFIT-----IPVLDPCIYVTRYAQKLELEGDT 197
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
KV TA +L MKRDW+ GR+PSGLCGAAL V+A +G S D+V IV++ +T+
Sbjct: 198 HKVSLTALRLLQRMKRDWMAIGRRPSGLCGAALLVAARMNGYNRSVQDLVGIVNMSTSTI 257
Query: 252 MKRLIEFENTDSGSLTIEDF 271
KRL EF T SG L +++F
Sbjct: 258 RKRLTEFAETPSGKLNLDEF 277
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 29/133 (21%)
Query: 408 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 467
E DG+ + IDD E+D Y+ +EE K +W N +L+
Sbjct: 435 EDGDGALDLDGIDDEEIDNYILTKEESALKAKMWVTENIGFLK----------------- 477
Query: 468 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 527
L+ +++ + AA K K+K ++ + N G T E +++L +K+
Sbjct: 478 ---------LEREKQIQKSRDAAAGKETKKKLKRSRKKLTNQG---TPGENFQKILQEKK 525
Query: 528 LSSKINYDVLEKL 540
+S KINYDVL+ +
Sbjct: 526 ISKKINYDVLKSI 538
>gi|317137549|ref|XP_001727802.2| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
oryzae RIB40]
Length = 745
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 165/563 (29%), Positives = 263/563 (46%), Gaps = 52/563 (9%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV Q+ YG
Sbjct: 74 DGQKVCSGCGTVISEANIVSEVTFGETSSGAAIVQGTFVGEDQTHVRSYGPGFQRGGGAE 133
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 134 SREITEQNGNRYINQLARALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 191
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L + L + ++ +DP +++F
Sbjct: 192 ACRRQDGNTVMLIDFADVLMINVFKLGRTYKALLEELRLGGNVFLMNPIDPESLIYRFAK 251
Query: 185 RLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 252 QLEFGAATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYV 311
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCK 302
V + E T+ +RL EF T+SG LT++ F + + E H+ + G K S +
Sbjct: 312 VKVTEITISQRLNEFGATESGELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSFKRR 369
Query: 303 HKDTGKPFACGLCRSC--------YEEFMTISEGLEGGADP--PAFQVAERERMVKASAE 352
+T L + ++ ++G + P PA A+ ER + ++
Sbjct: 370 PTETAADIEGDLTDAATTPSNIAPQQQKRVDADGFAIPSLPIDPALIAADGERRMSTTSV 429
Query: 353 ENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEG-EGDHTK--TPG---VDAT 406
E+ ++P + + + +P Q AS E E + T T G +++T
Sbjct: 430 ESEIAPEVGENPGKPARGRPKGSKARPLPTPTPDQIASEEALENEMTAYLTKGSNMIEST 489
Query: 407 TEASDGSDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAA 460
T ++ID D EV L + E K+ IW N++YL Q AK
Sbjct: 490 TVPRKAVSESAEIDEAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK----- 544
Query: 461 AAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 520
A K ALE + + G+ ++ V + + + + S PA EATR
Sbjct: 545 ALKRALEEA--DSQPGMHKPRKRRRGRLGDVTYLQGDGEDGDGRSTRASTPA----EATR 598
Query: 521 RMLTKKRLSSKINYDVLEKLFDD 543
RML ++ S KINY +LE LF +
Sbjct: 599 RMLERRGFSKKINYRLLESLFGE 621
>gi|302682668|ref|XP_003031015.1| hypothetical protein SCHCODRAFT_77245 [Schizophyllum commune H4-8]
gi|300104707|gb|EFI96112.1| hypothetical protein SCHCODRAFT_77245 [Schizophyllum commune H4-8]
Length = 543
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 159/284 (55%), Gaps = 20/284 (7%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT-- 58
M C+ C C +CG V+E+ E F + + G + + G+FV
Sbjct: 1 MAICTECGGTTIDSDAAAGNSFCTQCGTVVEESQIVNEVVFGETSTGAAMVQGSFVAQGA 60
Query: 59 ----IQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
+ YG SRE+ + A ++ Q+ AL++ E + A R Y +AV F
Sbjct: 61 TRARLGGPYGNRGNVESREQTLANAERNIAQIAIALHLSEV--VRFAALRLYTLAVEHKF 118
Query: 110 TKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
TKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG +YLQL Q L +
Sbjct: 119 TKGRKSMNVAAVCLYVACRQKETRQYMLIDFSDILEVNVFELGHIYLQLVQTLCLR---- 174
Query: 169 VLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
L VDPS ++ +F L G ++V + A ++ RDW+T GR+P+G+CGAAL ++
Sbjct: 175 -LPLVDPSHYISRFAALLEFGDETQRVANDAVRLVQRFDRDWMTRGRRPAGICGAALLLA 233
Query: 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
A + + S +IV++V I + TL KRL EF+NT SG+LT+ DF
Sbjct: 234 ARMNNFRRSVEEIVQVVKIADVTLKKRLEEFKNTPSGALTLADF 277
>gi|927598|gb|AAC50170.1| TFIIIB 90 kDa subunit [Homo sapiens]
gi|1581601|prf||2116442A transcription factor IIIB
Length = 675
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 168/572 (29%), Positives = 244/572 (42%), Gaps = 106/572 (18%)
Query: 23 CDRCGKVLEDHNFSTEATFVKN------AAGQ----------SQLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV++ A GQ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQDGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+ S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLVLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G N +V TA +L MKRDW+ TGR PSGLCG AL V+A H + + +++ +V
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRGPSGLCGGALLVAARMHDFRRTVKEVISVVK 254
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGP---KVSGMNEVLCK 302
+CE+TL KRL EFE+T + LTI++FM K +L E G ++ + +VL K
Sbjct: 255 VCESTLRKRLTEFEDTPTSQLTIDEFM--KIDLEEECDPPSYTAGQRKLRMKQLEQVLSK 312
Query: 303 HKDTGKPFACGLCRSCYEEFMTI----SEGLEGGADPPA--FQVAERERMVKASAEENSS 356
+ + S Y++ + I S GG P R ++V
Sbjct: 313 KLEEVEGEI-----SSYQDAIEIELENSRPKRGGLQPGKRWLHRGHRVQLVWRGGHRGRG 367
Query: 357 FERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDA-----TTEASD 411
P + P C Q S+ +TP + + T AS
Sbjct: 368 AGSRGQPPEQRLIPG--------APWWCPRQLGSSRKPRVGRQTPALGSLLDPLPTAASL 419
Query: 412 G---------SDNFSDIDDFEVDGYLH--------------NEEEKHYKKIIWEEMNREY 448
G S SD D DG L NE E K +W N EY
Sbjct: 420 GISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEY 479
Query: 449 LEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKN 508
L EQ KEA A K EL KE + K++ + +
Sbjct: 480 LREQREKEARIAKEK------------------ELGIY---------KEHKPKKSCKRRE 512
Query: 509 SGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
A TA EA +ML +K++SSKINY VL L
Sbjct: 513 PIQASTAREAIEKMLEQKKISSKINYSVLRGL 544
>gi|410079855|ref|XP_003957508.1| hypothetical protein KAFR_0E02200 [Kazachstania africana CBS 2517]
gi|372464094|emb|CCF58373.1| hypothetical protein KAFR_0E02200 [Kazachstania africana CBS 2517]
Length = 576
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 161/265 (60%), Gaps = 17/265 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----YGAS-----R 67
++ L C CG V ED+ +E TF + ++G + + G+F+ QS +G S R
Sbjct: 20 NNDLVCKECGTVSEDNPIVSEVTFGETSSGAAMIQGSFISAGQSHASFMSHGGSSALESR 79
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++ A +R + +AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+AC
Sbjct: 80 ENTLKNARRKLRAVSHALSIPEY--ITDAAFQWYKLALAHNFVQGRRSQNVIASCLYVAC 137
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ +LIDFS+ L ++VY +GA +L++ + L+IA+ L DPSIF+ F ++L
Sbjct: 138 RKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHIAE----LPLADPSIFIQHFAEKLE 193
Query: 188 PGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G K KV A + M DW+ GR+P+G+ GA + ++ + L+ + S+IV + H+
Sbjct: 194 LGDKKIKVVKDAVKLAQRMSNDWMFEGRRPAGIAGACVLLACRMNNLRRTHSEIVAVSHV 253
Query: 247 CEATLMKRLIEFENTDSGSLTIEDF 271
E TL KRL EF++T++G L+IE+F
Sbjct: 254 AEETLQKRLNEFKHTNAGKLSIEEF 278
>gi|350403589|ref|XP_003486845.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Bombus
impatiens]
Length = 659
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 168/604 (27%), Positives = 251/604 (41%), Gaps = 154/604 (25%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C +C P C CG VLED +E F + +G + G FV +
Sbjct: 6 CRNCGSTNIETDPARGDAVCTDCGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 63 ---YGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+GA SR ++ A + + L + + + + FY +A+ R T+
Sbjct: 66 ATGFGATYHVNGKESRGITLQNARKGITHLCMQLQLNQ--HCIDTSMNFYKMALNRQLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+ A+C+Y+ CR + +LID S+ L I V+ELG YL+ Q L I +
Sbjct: 124 GRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLRFTQALCIN-----IP 178
Query: 172 QVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDP +++ +F ++L G +V TA ++ MKRD I +GR+PSGLCGAAL ++A
Sbjct: 179 SVDPCLYIMRFANKLEFGEKTHEVSMTALRVVQRMKRDSIHSGRRPSGLCGAALLMAARL 238
Query: 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNG 290
H S +DI+KIV + E+TL KRLIEF +T S +LT+
Sbjct: 239 HEFNRSPADIIKIVKVHESTLRKRLIEFGDTPSSALTL---------------------- 276
Query: 291 PKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA---ERERM- 346
EEFMT+ LE DPPAF+ A +RER+
Sbjct: 277 -----------------------------EEFMTVD--LEEEQDPPAFKAARKKDRERLQ 305
Query: 347 --------------VKASAEEN-----------SSFERESDSPFM--SRVDKVQSPEPER 379
+ EE+ +S ER F+ S +D ++
Sbjct: 306 RLNIDTEINELQAEIDKQLEEHRLGKMKKRKDAASIERADTDRFIRESNLDVIKHYVGND 365
Query: 380 V--PKNCTTQTASNE-------GEGDHTKTPG--------------VDATTEASDGSDNF 416
V P N + N G G + + G V+ E G +
Sbjct: 366 VDDPDNDFQDSEMNNINDRLITGLGPNIASMGLISINDRENETKESVNTNFENDTGEIDV 425
Query: 417 SDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEG 476
+D+DD E+D Y+ +E+E +K +W ++N EYL +Q KE
Sbjct: 426 ADLDDEELDSYIMSEKEAQFKHNLWNKVNAEYLNQQKEKEERRQKE-------------- 471
Query: 477 LQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDV 536
+ R K+ KN PA TA EA +ML +K++SSKINY+V
Sbjct: 472 -------KEEGKPEKKRRRTTKRN------KNQVPANTAGEAIEKMLQEKKISSKINYEV 518
Query: 537 LEKL 540
L+ L
Sbjct: 519 LKSL 522
>gi|365983082|ref|XP_003668374.1| hypothetical protein NDAI_0B00970 [Naumovozyma dairenensis CBS 421]
gi|343767141|emb|CCD23131.1| hypothetical protein NDAI_0B00970 [Naumovozyma dairenensis CBS 421]
Length = 636
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 166/291 (57%), Gaps = 19/291 (6%)
Query: 1 MVWCSSC--ARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT 58
M C SC H +S L C CG V ED+ +E TF + +AG + + G+F+
Sbjct: 1 MPVCKSCKGTEFERDHSNANSDLVCKSCGFVSEDNPIVSEVTFGETSAGAAVVQGSFIGA 60
Query: 59 IQSE-----YGAS-----RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
QS +G S RE + A +R + +AL+I E I A ++Y +A+A N
Sbjct: 61 GQSHASFMSHGGSSALDSRENTLNNARRKLRAVSHALSIPEY--ITDAAFQWYKLALAYN 118
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
F +GRR++ V ASCLY+ACR++ +LIDFS+ L ++VY +GA +L++ + L+I+
Sbjct: 119 FVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKRLHISK--- 175
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
L DPS+F+ F ++L G K KV A + M DW+ GR+P+G+ GA + ++
Sbjct: 176 -LPLADPSLFIQHFAEKLDLGDKKIKVVKDAVKLAQRMSHDWMFEGRRPAGIAGACVLLA 234
Query: 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKEL 278
+ L+ + S+IV + H+ E TL +RL EF+NT+SG L+I +F +EL
Sbjct: 235 CRMNNLRRTHSEIVAVSHVAEETLQQRLNEFKNTNSGKLSIHEFRKASEEL 285
>gi|330796592|ref|XP_003286350.1| hypothetical protein DICPUDRAFT_6794 [Dictyostelium purpureum]
gi|325083701|gb|EGC37147.1| hypothetical protein DICPUDRAFT_6794, partial [Dictyostelium
purpureum]
Length = 426
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 150/258 (58%), Gaps = 20/258 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV---RTIQSEYGA-----SRER 69
D + C CG + + N +E +F N S + G FV R S Y + SR
Sbjct: 14 DGSVVCTDCGTIKDSANIVSEISFGDN----SSIVGTFVSATRRTGSSYRSLGGRDSRAM 69
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+E A + ++ +L I + A+R + +A+ NFTKGR+T+ V ASCLY+ CR+
Sbjct: 70 SLENARRRLDEIATSLKIRTHH--IDSAQRSFELAMENNFTKGRKTKLVAASCLYVVCRR 127
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P LLIDFS L +NV+ L +LQL ++L I L VDPS+F+++F+ L G
Sbjct: 128 EKTPHLLIDFSEVLQVNVFTLAHTFLQLIKLLNIQ-----LPIVDPSLFIYRFSSSLEFG 182
Query: 190 G-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
K+V TA ++A MKRDW+ TGRKPSG+CGAALY+++ HG K S +IV IV I E
Sbjct: 183 SQTKEVTATANKLVARMKRDWMCTGRKPSGICGAALYIASKIHGFKRSMKEIVHIVKIGE 242
Query: 249 ATLMKRLIEFENTDSGSL 266
+TL+ RL EF T S SL
Sbjct: 243 STLLARLEEFRRTPSASL 260
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 413 SDNFSDIDDFEVDGYL-HNEEEKHYKKIIWEEMNREYLEEQAAKE 456
+D D+ + E+D YL H++E K++IW E+N+E++E+ A ++
Sbjct: 364 NDTLDDLSEDELDLYLEHDKETVKKKEVIWTELNKEWIEKNAERQ 408
>gi|126289989|ref|XP_001364012.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Monodelphis
domestica]
Length = 681
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 153/283 (54%), Gaps = 21/283 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR-----T 58
C C P C CG VLED+ +E FV+N+ G S G FV
Sbjct: 6 CRGCGGTDIELDPGRGDAVCTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGK 65
Query: 59 IQSEYGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
I S G SR + ++ + + N L + + + A F+ +AV+++ T
Sbjct: 66 IPSVGGGFHVNLGKESRAQTLQNGKRQIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLT 123
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I +
Sbjct: 124 RGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA--- 180
Query: 171 KQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
+DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 181 --IDPCLYIPRFAHMLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAAR 238
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
H + + +++++V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 239 MHDFRRTVKEVIRVVKVCESTLRKRLTEFEDTPTSQLTIDEFM 281
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 27/132 (20%)
Query: 409 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 468
+ DG + + IDD E+D Y+ NE E K +W + + +Y++EQ KEA A K
Sbjct: 446 SGDGELDLNGIDDSEIDRYILNENEAQIKAELWMKEHADYVKEQKEKEARIAKEK----- 500
Query: 469 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 528
EL KE + K++++ + A TA EA +ML +K++
Sbjct: 501 -------------ELGIY---------KEHKPKKSSKKREPIQASTAGEAIEKMLEQKKI 538
Query: 529 SSKINYDVLEKL 540
SSKINY+VL L
Sbjct: 539 SSKINYNVLRDL 550
>gi|238489759|ref|XP_002376117.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus flavus NRRL3357]
gi|220698505|gb|EED54845.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus flavus NRRL3357]
Length = 1098
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 166/563 (29%), Positives = 257/563 (45%), Gaps = 69/563 (12%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV Q+ YG
Sbjct: 74 DGQKVCSGCGTVISEANIVSEVTFGETSSGAAIVQGTFVGEDQTHVRSYGPGFQRGGGAE 133
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 134 SREITEQNGNRYINQLARALNIPESAS--KAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 191
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L + L + ++ +DP +++F
Sbjct: 192 ACRRQDGNTVMLIDFADVLMINVFKLGRTYKALLEELRLGGNVFLMNPIDPESLIYRFAK 251
Query: 185 RLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 252 QLEFGAATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYV 311
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCK 302
V + E T+ +RL EF T+SG LT++ F + + E H+ + G K S +
Sbjct: 312 VKVTEITISQRLNEFGATESGELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSFKRR 369
Query: 303 HKDTGKPFACGLCRSCY--------EEFMTISEGLEGGADP--PAFQVAERERMVKASAE 352
+T L + ++ ++G + P PA A+ ER + ++
Sbjct: 370 PTETAADIEGDLTDAATTPSNIAPQQQKRVDADGFAIPSLPIDPALIAADGERRMSTTSV 429
Query: 353 ENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEG-EGDHTK--TPG---VDAT 406
E+ ++P + + + +P Q AS E E + T T G +++T
Sbjct: 430 ESEIAPEVGENPGKPARGRPKGSKARPLPTPTPDQIASEEALENEMTAYLTKGSNMIEST 489
Query: 407 TEASDGSDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAA 460
T ++ID D EV L + E K+ IW N++YL Q AK
Sbjct: 490 TVPRKAVSESAEIDEAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK----- 544
Query: 461 AAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 520
A K ALE A S+ + R S A T EATR
Sbjct: 545 ALKRALEE-----------------------ADSQPGMHKPRKRRRGRSTRASTPAEATR 581
Query: 521 RMLTKKRLSSKINYDVLEKLFDD 543
RML ++ S KINY +LE LF +
Sbjct: 582 RMLERRGFSKKINYRLLESLFGE 604
>gi|66813424|ref|XP_640891.1| TATA box-binding protein-associated factor, RNA polymerase III,
subunit 2 [Dictyostelium discoideum AX4]
gi|60468904|gb|EAL66904.1| TATA box-binding protein-associated factor, RNA polymerase III,
subunit 2 [Dictyostelium discoideum AX4]
Length = 706
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 147/259 (56%), Gaps = 19/259 (7%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--SEYGA-----SRERLMEK 73
+ C CG V E N +E F G S + G FV + S Y + SR +E
Sbjct: 21 VVCTACGTVKESANIVSEVQF----GGDSSIVGTFVSATRKPSSYRSLGGRDSRAMSVEN 76
Query: 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 133
A + Q+ N+L I ++ A+R + +A+ NFTKGR+T V A+CLY+ CR++ P
Sbjct: 77 ARKKLDQIGNSLRI--RSHLIDSAQRTFELAMENNFTKGRQTRLVAAACLYIVCRRERTP 134
Query: 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NK 192
LLIDFS L +NV+ + +LQL ++L I L VDPS F+ +F L G K
Sbjct: 135 HLLIDFSENLQVNVFIVAGTFLQLIKLLNIQ-----LPIVDPSFFIQRFASALEFGDQTK 189
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 252
V TA ++A MKRDW++ GRKPSG+CGA+LY+++ HG K S +IV +V I E TL+
Sbjct: 190 DVIATANKLVARMKRDWMSIGRKPSGICGASLYIASKIHGFKRSMKEIVHVVKIGEQTLI 249
Query: 253 KRLIEFENTDSGSLTIEDF 271
RL EF T + +L ++F
Sbjct: 250 NRLDEFRKTPTATLRFDEF 268
>gi|156100339|ref|XP_001615897.1| transcription factor IIIb subunit [Plasmodium vivax Sal-1]
gi|148804771|gb|EDL46170.1| transcription factor IIIb subunit, putative [Plasmodium vivax]
Length = 826
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 154/278 (55%), Gaps = 15/278 (5%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----- 56
V C +C ++ C RCG VLE++ FV+N G + G FV
Sbjct: 6 VVCKNCHSTDVETNEGQGEVICLRCGSVLEENKIVESLEFVENNNGAISMVGQFVPASGN 65
Query: 57 RTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
++ +G SRE ++K + +++++ + L++ S + V A+R Y +A+ RNFT GR
Sbjct: 66 KSFILSWGVRESRELSLQKGYINIQKIADHLHL--STQHVEAAQRIYLMALQRNFTMGRN 123
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
V ASCLY CR++ P +LIDFS+ L V LG +L+L ++L+I+ + +D
Sbjct: 124 NSYVAASCLYTICRREKSPVMLIDFSDILQTPVKPLGKTFLKLLRLLHIS-----VPNID 178
Query: 175 PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
PS++L +F +L L KV T ++ +M RDWI TGR+P+GLCGAAL +S HG+
Sbjct: 179 PSLYLERFAHKLNLKNAIYKVTYTGIKLIQAMTRDWICTGRRPTGLCGAALLISTRMHGI 238
Query: 234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ I IV I T++KRL EF+NT + + DF
Sbjct: 239 FIHSNTIANIVRISNPTIIKRLSEFKNTSTAKMKAADF 276
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 29/146 (19%)
Query: 402 GVDATTEAS--DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 459
GVD ++AS +++ SD D E++ + +E+E+ K +IW++M + Y + +
Sbjct: 702 GVDIPSDASLEQLNESLSDFYDSEIENIILSEKERKRKMLIWDDMMKSYFPQYYKQLKKQ 761
Query: 460 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPA--QTALE 517
+++ P+ + A EK +K+ + + P QT +
Sbjct: 762 KKKRSSYH------PDRVGA-----------------EKSRKKKKKENDDHPLDEQTTGD 798
Query: 518 ATRRMLTK--KRLSSKINYDVLEKLF 541
+ L K K +S+K+NYDVL+ LF
Sbjct: 799 SVIMALEKSDKSMSTKMNYDVLKSLF 824
>gi|428176989|gb|EKX45871.1| hypothetical protein GUITHDRAFT_71051 [Guillardia theta CCMP2712]
Length = 356
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 147/261 (56%), Gaps = 19/261 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV--RTIQSEYGA---------SRERLM 71
C CG VLE+ +E F +NA GQS + G FV + GA SRE +
Sbjct: 24 CTNCGHVLEECAIVSEVQFSENAGGQSSVVGQFVPEHGLSGFRGAPGYGGFSKESREVTL 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
++ + L + + V VA RF+ AV +NF +GRRT V A+CLY+ CR+
Sbjct: 84 ANGKRIIQHIAGCLRLASNH--VEVAHRFFQQAVQKNFIQGRRTNSVVAACLYIVCRRLK 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGG 190
+LIDF+ L I+VY+LG V+L+ C+ L+I L +DPS+++ +F L
Sbjct: 142 TSHMLIDFAEVLQIDVYDLGNVFLKFCKELHIK-----LDPIDPSLYIRRFASMLEFEEK 196
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 250
+V TA I+A M R+W+ TGR+P+G+CGA L ++A HG +++ I ++V IC+ T
Sbjct: 197 THQVAHTALRIVARMNREWMITGRRPAGICGAGLIIAAKMHGFNRTETQIAQVVRICDGT 256
Query: 251 LMKRLIEFENTDSGSLTIEDF 271
L KRL EF+ T + LT+ +F
Sbjct: 257 LKKRLSEFDETGASDLTVSEF 277
>gi|338753402|ref|NP_001229715.1| transcription factor IIIB 90 kDa subunit isoform 4 [Homo sapiens]
gi|332843234|ref|XP_003314588.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1 [Pan
troglodytes]
gi|397470871|ref|XP_003807035.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 4 [Pan
paniscus]
Length = 584
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 149/491 (30%), Positives = 222/491 (45%), Gaps = 91/491 (18%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA-------- 273
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECD 175
Query: 274 -----------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEF 322
R K+L + ++ L ++S + + + +P A G S ++
Sbjct: 176 PPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDG 235
Query: 323 MT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERV 380
T + L G + E E + A++ N RE + SPE
Sbjct: 236 STEDTASSLCG------EEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGR 289
Query: 381 PKNCTT-----QTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVD------ 425
P + TA++ G D + + D + DG + S IDD E+D
Sbjct: 290 PPALGSLLDPLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRRDLSM 349
Query: 426 ----------------GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 469
Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 350 PRCAKAKSQPHFPVLAQYILNESEARVKAELWMRENAEYLREQREKEARIAKEK------ 403
Query: 470 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 529
EL KE + K++ + + A TA EA +ML +K++S
Sbjct: 404 ------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKIS 442
Query: 530 SKINYDVLEKL 540
SKINY VL L
Sbjct: 443 SKINYSVLRGL 453
>gi|366994093|ref|XP_003676811.1| hypothetical protein NCAS_0E03840 [Naumovozyma castellii CBS 4309]
gi|342302678|emb|CCC70454.1| hypothetical protein NCAS_0E03840 [Naumovozyma castellii CBS 4309]
Length = 657
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 156/265 (58%), Gaps = 17/265 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG----------ASR 67
++ L C CG V ED+ +E TF + +AG + + G+F+ QS G SR
Sbjct: 87 NNDLVCLSCGVVSEDNPIVSEVTFGETSAGAAMVQGSFIGAGQSHAGFMSHGGSSALESR 146
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E + A +R + +ALNI E I A ++Y +A+A NF +GRR++ V ASCLY+AC
Sbjct: 147 ENTLNNARRKLRAVSHALNIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVAC 204
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ +LIDFS+ L ++VY +GA +L++ + L+I + L DPSIF+ F ++L
Sbjct: 205 RKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKRLHITE----LPLADPSIFIQHFAEKLE 260
Query: 188 PGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G K KV A + M DW+ GR+P+G+ GA + ++ + L+ + S+IV + H+
Sbjct: 261 LGDKKIKVVKDAVKLAQRMSHDWMFEGRRPAGIAGACILLACRMNNLRRTHSEIVAVSHV 320
Query: 247 CEATLMKRLIEFENTDSGSLTIEDF 271
E TL +RL EF+NT +G L+I +F
Sbjct: 321 AEDTLQQRLNEFKNTKAGKLSIHEF 345
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAAKAAL 466
D +N D+DD E++ L +EE K+ IW +N EYL EQ +K EA A
Sbjct: 520 DDPENLEDVDDEELEAQLLDEEASKLKERIWLGINGEYLLEQESKRLKEEADMVTGNTAN 579
Query: 467 EASYKNCPEGLQAAQ-ELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALEATRRML 523
+ + + E+ + A V ++ +AA A+ +G TA ++ + ML
Sbjct: 580 KKRRGGGGGRRKKPKTEITTSNATGVLAQLTDRTGLQAALKAAEENGDFTTA-DSVKNML 638
Query: 524 TKKRLSSKINYDVLEKLF 541
K S KINYD ++ LF
Sbjct: 639 QKATFSKKINYDAIDGLF 656
>gi|85000687|ref|XP_955062.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303208|emb|CAI75586.1| unnamed protein product [Theileria annulata]
Length = 531
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 149/259 (57%), Gaps = 14/259 (5%)
Query: 20 QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA-------SRERLME 72
+L C CG VL+++ + + N +G +Q+ G FV + S A SRE+++
Sbjct: 22 ELVCQDCGAVLQENTILEQVEYSDNNSGNTQVLGRFVSNLSSGRQALTHTTWHSREQVIN 81
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ ++++++ AL + S + AKR Y +AV RNFT GR V + CLY CR++
Sbjct: 82 RGNENIKKIAEALRL--SPHHIDAAKRIYLLAVQRNFTMGRNNLHVASCCLYTICRRERT 139
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 192
P LLIDFS+ L V +G ++++L ++L+I+ + +DPSIF +F +L
Sbjct: 140 PHLLIDFSDVLLTPVKTIGQIFMKLVRMLHIS-----VPNIDPSIFFERFATQLQLKDIH 194
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 252
K+ +T I+ +M RDW+ TGR+P+GLCGAAL V+A HG+ S + +V I T++
Sbjct: 195 KIINTGNRIIQAMNRDWLCTGRRPTGLCGAALLVAARFHGISLSAESVSSVVRISHPTIL 254
Query: 253 KRLIEFENTDSGSLTIEDF 271
KRL EF+ T + + + +F
Sbjct: 255 KRLSEFKVTSTAHIKVSEF 273
>gi|71027505|ref|XP_763396.1| transcription factor IIIb subunit [Theileria parva strain Muguga]
gi|68350349|gb|EAN31113.1| transcription factor IIIb subunit, putative [Theileria parva]
Length = 526
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 151/259 (58%), Gaps = 14/259 (5%)
Query: 20 QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEYGASRERLME 72
+L C CG VL+++ + + N++G +Q+ G FV +T+ SRE+++
Sbjct: 22 ELICQDCGAVLQENTILEQVEYADNSSGNTQVLGRFVSNLSSGRQTLSYNNWHSREQVIN 81
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ ++++++ AL + S + AKR Y +AV RNFT GR V + CLY CR++
Sbjct: 82 RGNENIKRIAEALKL--SPHHIDAAKRIYLLAVQRNFTMGRNNLHVASCCLYTICRREKT 139
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 192
P LLIDFS+ L V +G ++++L ++L+I+ + VDPSIF +F +L
Sbjct: 140 PHLLIDFSDVLLTPVKTIGQIFMKLVRMLHIS-----VPNVDPSIFFERFATQLKLKDIH 194
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 252
K+ +T I+ +M RDW+ TGR+P+GLCGAAL V+A HG+ S + +V I T++
Sbjct: 195 KIINTGNRIIQAMNRDWLCTGRRPTGLCGAALLVAARFHGIPLSAEAVSSVVRISHPTIL 254
Query: 253 KRLIEFENTDSGSLTIEDF 271
KRL EF+ T + ++ + +F
Sbjct: 255 KRLSEFKVTSTANIKVSEF 273
>gi|118092254|ref|XP_421405.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Gallus gallus]
Length = 681
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 150/264 (56%), Gaps = 21/264 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+N+ G S G FV T+ + A SR +
Sbjct: 26 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHANLGKESRAQ 85
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR
Sbjct: 86 TLQNGKRQIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRT 143
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 144 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFG 198
Query: 190 G-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++++V +CE
Sbjct: 199 DKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIRVVKVCE 258
Query: 249 ATLMKRLIEFENTDSGSLTIEDFM 272
+TL KRL EFE T + LTI++FM
Sbjct: 259 STLRKRLTEFEYTPTSQLTIDEFM 282
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 64/130 (49%), Gaps = 27/130 (20%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
DG + S IDD E+D Y+ NE E K +W + N +YL+EQ KEA A K
Sbjct: 449 DGELDLSGIDDSEIDRYILNETEAQIKAELWMKENADYLKEQKEKEARIAKEK------- 501
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 530
EL KE + K+AA+ + A TA EA +ML +K++SS
Sbjct: 502 -----------ELGIY---------KEHKPKKAAKKREPIQASTAGEAIEKMLEQKKISS 541
Query: 531 KINYDVLEKL 540
KINY+VL L
Sbjct: 542 KINYNVLRDL 551
>gi|221059469|ref|XP_002260380.1| transcription factor IIIb subunit [Plasmodium knowlesi strain H]
gi|193810453|emb|CAQ41647.1| transcription factor IIIb subunit, putative [Plasmodium knowlesi
strain H]
Length = 850
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 161/294 (54%), Gaps = 17/294 (5%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----- 56
+ C +C ++ C RCG VLE+ FV+N G + G FV
Sbjct: 6 IICKNCHSTDVETNEGQGEVICLRCGSVLEESKIVESLEFVENNNGAISMVGQFVPASGN 65
Query: 57 RTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
++ +G SRE ++K + +++++ L++ S + V A+R Y +A+ RNFT GR
Sbjct: 66 KSFILSWGVRESRELSLQKGYINIQKIAEHLHL--STQHVESAQRIYLMALQRNFTMGRN 123
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
V ASCLY CR++ P +LIDFS+ L V LG +L+L ++L+I+ + +D
Sbjct: 124 NSYVAASCLYTICRREKSPVMLIDFSDILQTPVKPLGKTFLKLLRLLHIS-----VPNID 178
Query: 175 PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
PS++L +F +L L KV T ++ +M RDWI TGR+P+GLCGAAL +S HG+
Sbjct: 179 PSLYLERFAHKLNLKNDIYKVTYTGIKLIQAMTRDWICTGRRPTGLCGAALLISTRMHGI 238
Query: 234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 287
+ I IV I T++KRL EF+NT + + + DF K L++ + +LP
Sbjct: 239 FVHSNTIANIVRISNPTIIKRLSEFKNTSTAKMKVSDF--DKIRLNDLPSNSLP 290
>gi|358054427|dbj|GAA99353.1| hypothetical protein E5Q_06048 [Mixia osmundae IAM 14324]
Length = 636
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 159/283 (56%), Gaps = 18/283 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQ-----SQLSGNFVR- 57
C C+ + P + L C CG V+E+ +E TF + + G + LSG+ VR
Sbjct: 8 CDVCSSSNVVNDPGNGSLVCIDCGSVIEEDAIVSEVTFAETSTGAAVVTGTYLSGDAVRA 67
Query: 58 --TIQSEYGA----SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
T GA SRE+ + MR++ N+L+I E + A R++ +A+ F +
Sbjct: 68 RGTGPYRNGAPGPESREQTLANGRRRMRELANSLSIEE--RVTDAASRWFTLAIHSTFNR 125
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+T+ V A+CLYLACR +LIDFS+ L +NV+ LG YL+L + L +++ +
Sbjct: 126 GRKTDHVVAACLYLACRHNKMTLMLIDFSDLLQVNVFVLGQTYLKLVKNLNMSER---VP 182
Query: 172 QVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDPSI++ +F L G + +V A ++ M RDW+ TGR+P+G+CGAAL ++A
Sbjct: 183 LVDPSIYIQRFAALLEFGKDTTQVSLDASRLIQRMDRDWMLTGRRPAGVCGAALVIAARM 242
Query: 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 273
+ + + ++ ++V I + TL KRL EF T S LT+E+F A
Sbjct: 243 NDYRRTLLEVTQVVKIADITLRKRLDEFRQTQSSDLTVEEFRA 285
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 32/137 (23%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
D + + SD+D+ E+D Y+ + ++ K +W NR+YLE AAK+
Sbjct: 459 DAAGSLSDLDEDELDEYILSAADREAKTRLWITFNRDYLENAAAKQ-------------- 504
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSR-KEKQQKRAAEAKNSG-PAQTALEATRRML-TKKR 527
+N E K R K + +KR E + G PA TA EA ML +KKR
Sbjct: 505 RNADEE---------------GKPRPKPRARKRKKEEDSPGLPAATAGEAATIMLQSKKR 549
Query: 528 LSSKINYDVLEKLFDDS 544
+S K+NYDV+ +L ++
Sbjct: 550 VSKKLNYDVVSRLLQET 566
>gi|363753818|ref|XP_003647125.1| hypothetical protein Ecym_5570 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890761|gb|AET40308.1| hypothetical protein Ecym_5570 [Eremothecium cymbalariae
DBVPG#7215]
Length = 577
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 164/285 (57%), Gaps = 21/285 (7%)
Query: 1 MVWCSSCARHVTGHRPY---DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR 57
M C +C H R ++ L C CG V ED+ +E TF + ++G + + G+F+
Sbjct: 1 MPKCKNCG-HTEFERDLSNANNDLVCKSCGVVSEDNPIVSEVTFGETSSGAAVVQGSFIG 59
Query: 58 TIQSE--YGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
Q+ +G SRE + A +R + +AL I E + A ++Y +A+A
Sbjct: 60 AGQAHAAFGVRGGTSALESREATLNNARRKLRAVSHALQIPEY--VTDAAFQWYKLALAY 117
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
NF +GRR++ V ASCLY+ACR++ +LIDFS+ L ++VY +GA +L+L + L+I D
Sbjct: 118 NFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKLVKALHITD-- 175
Query: 168 NVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DPS+F+ F ++L G K KV A + M +DW+ GR+P+G+ GA L +
Sbjct: 176 --LPLADPSLFIQHFAEKLDLGDKKIKVVKDAVKLAQRMSKDWMYEGRRPAGIAGACLLL 233
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + L+ + S+IV + H+ E TL +RL EF+NT+SG L+I+ F
Sbjct: 234 ACRMNNLRRTHSEIVAVSHVAEETLQQRLNEFKNTNSGKLSIKQF 278
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 407 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 466
++ SD +N D+DD E++ ++ +EE K+ IW +N EYL EQ +K A A+
Sbjct: 442 SKVSDDPENLEDVDDDELNAHILDEEAFRLKERIWIGINGEYLLEQESKRLKQEADLASG 501
Query: 467 EASYKNCPEGLQA------AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 520
S K G Q ++L A ++ + + E T ++ +
Sbjct: 502 NTSLKKRRGGKQKRNKPPIIRDLPPGALLVADETGIQSVLQAVQEP-------TTADSVK 554
Query: 521 RMLTKKRLSSKINYDVLEKLF 541
ML K S KINYD ++ LF
Sbjct: 555 NMLQKTSFSKKINYDAIDGLF 575
>gi|401396470|ref|XP_003879829.1| hypothetical protein NCLIV_002820 [Neospora caninum Liverpool]
gi|325114237|emb|CBZ49794.1| hypothetical protein NCLIV_002820 [Neospora caninum Liverpool]
Length = 656
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 152/279 (54%), Gaps = 17/279 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------- 56
C SC ++ C RCG VLED F ++++G + G FV
Sbjct: 29 CRSCGSAELEANESRGEIICCRCGTVLEDLTLVDSLQFAESSSGGVSMVGQFVSSCSGAA 88
Query: 57 RTIQSEYGA---SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGR 113
R +++ G SRE+ +++ F++++ + L + S + + A R Y +A RNFT GR
Sbjct: 89 RGLRAGVGGGTDSREQTLQRGFNNIQSIAERLRL-SSQQHISSAHRLYLMATQRNFTLGR 147
Query: 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
R+ V ++CLY CR++ P LLIDF + L NV LG V+++L +VL++ + V
Sbjct: 148 RSVLVASACLYAICRRERTPHLLIDFCDVLRTNVRALGQVFMKLLRVLHLQ-----VPHV 202
Query: 174 DPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
DPS+FL +F ++ G V T ++ +M RDWI+TGR+P GLCGAAL ++A H
Sbjct: 203 DPSLFLERFACQMQLGDKTHTVAQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHN 262
Query: 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + DI IV + T+ +RL EF+ T + L + DF
Sbjct: 263 FQMNAEDIAHIVRVSGPTVNRRLQEFKQTATAQLAVADF 301
>gi|432948464|ref|XP_004084058.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Oryzias
latipes]
Length = 690
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 148/264 (56%), Gaps = 21/264 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT------------IQSEYGA-SRER 69
C CG VLED+ +E FV+ + G S G FV + G SR +
Sbjct: 25 CTSCGSVLEDNIIVSEVQFVEGSGGVSSAVGQFVSADGPVKAPLLGSGFHTSVGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ ++++ + L + + + A F+ +AV+++ T+GR+TE V A+CLYL CR
Sbjct: 85 TLQNGKRQIQKLGSQLQLNQ--HCLDTAFNFFKLAVSKHLTRGRKTEHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
+V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + S D++ +V +C
Sbjct: 198 LKTHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHKFRRSVKDVISVVKVCH 257
Query: 249 ATLMKRLIEFENTDSGSLTIEDFM 272
TL KRL EFE+T + LTI++FM
Sbjct: 258 TTLRKRLTEFEDTPTSQLTIDEFM 281
>gi|336381997|gb|EGO23148.1| hypothetical protein SERLADRAFT_371381 [Serpula lacrymans var.
lacrymans S7.9]
Length = 593
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/282 (37%), Positives = 159/282 (56%), Gaps = 22/282 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C+ C V + C +CG V+E++ +E TF + +AG + + G++V
Sbjct: 41 CTDCGGTVIEYDAAAGNGFCVKCGTVVEENTIVSEVTFGETSAGAAMVQGSYVGQGSTHA 100
Query: 59 -IQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+ +G SRE+ + A ++ AL + E + A R Y +AV FTKG
Sbjct: 101 RMNGPFGNRGSSESREQTIANASRKIQSFAAALRLSEV--VSLAATRLYTLAVEHKFTKG 158
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q L + L
Sbjct: 159 RKSLNVAAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLK-----LP 213
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS ++ +F LL G + KV A ++ RDW+T GR+P+G+CGAAL ++A
Sbjct: 214 LVDPSHYISRFA-ALLEFGEETHKVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLAAR 272
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + S +IV++V I + TL KRL EF+ T SG+LT+ DF
Sbjct: 273 MNNFRRSVEEIVQVVKIADTTLKKRLDEFKKTPSGALTLADF 314
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 42/131 (32%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D +D+ E+D +L +EE K+ +W E+NREYLE
Sbjct: 422 DELQGLDEEELDRFLLTDEEVRIKERVWVELNREYLE----------------------- 458
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 532
A+A RK+ K + SG TA E+ R ++ K + S +I
Sbjct: 459 ----------------AIAAKRKKTNNKPRDASTPSG--STAAESVRNLIKKNPKYSKRI 500
Query: 533 NYDVLEKLFDD 543
NYD L+ LF D
Sbjct: 501 NYDALKDLFMD 511
>gi|195144240|ref|XP_002013104.1| GL23944 [Drosophila persimilis]
gi|194102047|gb|EDW24090.1| GL23944 [Drosophila persimilis]
Length = 665
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 165/567 (29%), Positives = 255/567 (44%), Gaps = 103/567 (18%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----EYG----------ASR 67
C CG VLED +E F + G + + G FV S YG SR
Sbjct: 25 VCTNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFVSAESSGGATNYGYGKFQVGSGTESR 83
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++KA D+ + L S A F+ +A++R+ T+GR++ + A+C+Y+ C
Sbjct: 84 EVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALSRHLTRGRKSTHIYAACVYMTC 141
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 142 RTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSVDPCLYIMRFANRLQ 196
Query: 188 PGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D++ +V I
Sbjct: 197 LGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMVDVIGVVKI 256
Query: 247 CEATLMKRLIEFENTDSGSLTIEDFM---------------ARKK--------------E 277
E+TL KRL EF T SG LT+E+FM ARKK E
Sbjct: 257 HESTLRKRLSEFAETPSGGLTLEEFMTVDLEREQDPPSFRAARKKDRERIKDMGEHELTE 316
Query: 278 LHEGVAANLPNN-GPKVSGMNEVLCKHK-DTGKPFACGLCRSCYEEFMTISEGLEGGADP 335
L + + A+L + G S + L K K DT G +S E + + D
Sbjct: 317 LQKEIDAHLEKDLGKYSSSVFRQLTKIKGDTSFGSEPGTPKSVCENDIEME-------DS 369
Query: 336 PAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEG 395
F ++K E N ++ M+ ++ ++ P+ E + + ++ E
Sbjct: 370 RQFIEQSNAAIIKDLIEHNEDVKKTEPGSLMAGIEGLR-PDIEAICRVTQSELEDVERAK 428
Query: 396 DHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 455
+T V D++D E+D Y+ E+E K +W+ MN EYL+EQ +
Sbjct: 429 QPLETELV------------IDDLNDDELDQYVLTEDEAVTKLEMWKNMNAEYLQEQKER 476
Query: 456 EAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTA 515
+ + LA + +K K +K+ GP+ TA
Sbjct: 477 D------------------------ERLAKEREEGKPEKKKRKPRKKVI-----GPSSTA 507
Query: 516 LEATRRMLTKKRLSSKINYDVLEKLFD 542
EA +ML +K++SSKINYD+L+ L D
Sbjct: 508 GEAIEKMLQEKKISSKINYDILKTLTD 534
>gi|198451369|ref|XP_001358335.2| GA16127 [Drosophila pseudoobscura pseudoobscura]
gi|198131458|gb|EAL27473.2| GA16127 [Drosophila pseudoobscura pseudoobscura]
Length = 665
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 169/567 (29%), Positives = 257/567 (45%), Gaps = 103/567 (18%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----EYG----------ASR 67
C CG VLED +E F + G + + G FV S YG SR
Sbjct: 25 VCTNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFVSAESSGGATNYGYGKFQVGSGTESR 83
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++KA D+ + L S A F+ +A++R+ T+GR++ + A+C+Y+ C
Sbjct: 84 EVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALSRHLTRGRKSTHIYAACVYMTC 141
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 142 RTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSVDPCLYIMRFANRLQ 196
Query: 188 PGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D++ +V I
Sbjct: 197 LGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMVDVIGVVKI 256
Query: 247 CEATLMKRLIEFENTDSGSLTIEDFM---------------ARKK--------------E 277
E+TL KRL EF T SG LT+E+FM ARKK E
Sbjct: 257 HESTLRKRLSEFAETPSGGLTLEEFMTVDLEREQDPPSFRAARKKDRERINNIGEHELTE 316
Query: 278 LHEGVAANLPNN-GPKVSGMNEVLCKHK-DTGKPFACGLCRSCYEEFMTISEGLEGGADP 335
L + + A+L + G S + L K K DT G +S E + + D
Sbjct: 317 LQKEIDAHLEKDLGKYSSSVFRQLTKIKGDTSFGSEPGTPKSVCENDIEME-------DS 369
Query: 336 PAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEG 395
F ++K E N ++ M+ ++ ++ P+ E + C T S +
Sbjct: 370 RQFIEQSNAAIIKDLIEHNEDVKKTEPGSLMAGIEGLR-PDIEAI---CRV-TQSELEDV 424
Query: 396 DHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 455
+ K P TE D++D E+D Y+ E+E K +W+ MN EYL+EQ +
Sbjct: 425 ERAKQP---LETELV-----IDDLNDDELDQYVLTEDEAVSKLEMWKNMNAEYLQEQKER 476
Query: 456 EAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTA 515
+ + LA + +K K +K+ GP+ TA
Sbjct: 477 D------------------------ERLAKEREEGKPEKKKRKPRKKVI-----GPSSTA 507
Query: 516 LEATRRMLTKKRLSSKINYDVLEKLFD 542
EA +ML +K++SSKINYD+L+ L D
Sbjct: 508 GEAIEKMLQEKKISSKINYDILKTLTD 534
>gi|348536305|ref|XP_003455637.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Oreochromis niloticus]
Length = 700
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 148/264 (56%), Gaps = 21/264 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT------------IQSEYGA-SRER 69
C CG VLED+ +E FV+ + G S G FV + G SR +
Sbjct: 25 CTSCGSVLEDNIIVSEVQFVEGSGGVSSAVGQFVSADGPIKAPLLGSGFHTSVGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ ++Q+ + L + + + A F+ + V+++ T+GR+TE V A+CLYL CR
Sbjct: 85 TLQNGKRQIQQLGSQLQLNQ--HCLDTAFNFFKLVVSKHLTRGRKTEHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYILGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFG 197
Query: 190 G-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
+V TA ++ MKRDW+ TGR+PSGLCGAAL V+A H + S D++ +V +C+
Sbjct: 198 AKTHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVAARMHKFRRSVKDVIGVVKVCQ 257
Query: 249 ATLMKRLIEFENTDSGSLTIEDFM 272
TL KRL EFE+T + LTI++FM
Sbjct: 258 TTLRKRLTEFEDTPTSQLTIDEFM 281
>gi|82793708|ref|XP_728148.1| transcription factor IIIb 70 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23484353|gb|EAA19713.1| transcription factor iiib 70 kDa subunit [Plasmodium yoelii yoelii]
Length = 756
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 157/276 (56%), Gaps = 15/276 (5%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
C +C ++ C RCG VLE++ FV+N G + G F+ ++
Sbjct: 4 CKNCQSSDIETNEGQGEIICLRCGSVLEENKIVESLEFVENNNGAISMVGQFIPSSGTKS 63
Query: 59 IQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
+G SRE ++K + +++++ + L++ S++ + A+R Y +A+ RNFT GR
Sbjct: 64 FMLSWGIRESREISLQKGYINIQKIADNLHL--SNQHIEAAQRIYLMALQRNFTMGRNNS 121
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V ASCLY CR++ P +LIDFS+ L V LG +L+L ++L+I+ + +DPS
Sbjct: 122 YVAASCLYTICRREKSPIMLIDFSDILQTPVKPLGKTFLKLLRLLHIS-----VPNIDPS 176
Query: 177 IFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
+FL +F +L L KV T ++ +M RDWI+TGR+P+GLCGA+L ++ HG+
Sbjct: 177 LFLERFAYKLNLKNDIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGASLLIATRIHGINV 236
Query: 236 SKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + I ++V I T++KRL EF+NT+ + +F
Sbjct: 237 NSNTIAEVVRISNPTIIKRLYEFKNTNIAKIKASEF 272
>gi|299738096|ref|XP_001838087.2| transcription factor TFIIIB complex subunit brf1 [Coprinopsis
cinerea okayama7#130]
gi|298403152|gb|EAU83664.2| transcription factor TFIIIB complex subunit brf1 [Coprinopsis
cinerea okayama7#130]
Length = 864
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 159/282 (56%), Gaps = 22/282 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C+ C V + C +CG V+E++ E F + + G + + G+FV
Sbjct: 169 CNECGGSVIEYDHAAGNGFCIQCGTVVEENLIVNEIVFGETSNGAAIVQGSFVAQGATHA 228
Query: 59 -IQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+ YG SRE+ + A ++ + N L + E+ + A R Y +AV FTKG
Sbjct: 229 RMSGPYGNRGSTESREQTIANANKKIQSIANVLRLNET--VCLAATRLYTLAVEHKFTKG 286
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK +K ++LIDFS+ L +NV+ELG YLQL Q L + L
Sbjct: 287 RKSLNVVAVCLYVACRQKETKTYMLIDFSDLLQVNVFELGHTYLQLVQTLNLR-----LP 341
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS ++ +F LL G++ KV A ++ RDW+T GR+P+G+CGAAL ++A
Sbjct: 342 LVDPSHYISRFA-ALLEFGDETHKVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLAAR 400
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + S +IV++V I + TL KRL EF+ T SGSLT+ DF
Sbjct: 401 MNNFRRSVEEIVQVVKIADTTLKKRLDEFKATPSGSLTLADF 442
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 30/133 (22%)
Query: 413 SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 472
D S +D+ E+D ++ +E+E K+ +W E+NREYLE AAK A
Sbjct: 621 GDELSGLDEEELDRFILSEQEVKIKERVWVELNREYLEALAAKGDQTEPA---------- 670
Query: 473 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSK 531
KSRK ++ ++ TA E+ R ++ K + S +
Sbjct: 671 -------------------TKSRKRRKTNNKPRDASTPAGGTAAESVRNLIKKNPKYSKR 711
Query: 532 INYDVLEKLFDDS 544
INYD L+ LF D
Sbjct: 712 INYDALKDLFVDG 724
>gi|124809652|ref|XP_001348643.1| transcription factor IIIb subunit, putative [Plasmodium falciparum
3D7]
gi|23497541|gb|AAN37082.1|AE014824_1 transcription factor IIIb subunit, putative [Plasmodium falciparum
3D7]
Length = 748
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 155/278 (55%), Gaps = 15/278 (5%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----- 56
V C +C ++ C RCG VLE++ FV+N G + G F+
Sbjct: 16 VVCKNCLSSDVETNEGQGEVICLRCGSVLEENKIVESLEFVENNNGAISMVGQFIPSSGN 75
Query: 57 RTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
++ +G SRE ++K + +++++ + L++ S + + A+R Y +A+ RNFT GR
Sbjct: 76 KSFILSWGIRESREISLQKGYVNIQKIADHLHL--SSQHIEAAQRIYLMALQRNFTMGRN 133
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
V ASCLY CR++ P +LIDFS+ L V LG +L+L ++L+I + +D
Sbjct: 134 NSYVAASCLYTICRREKSPIMLIDFSDILQTPVKPLGKTFLKLLRLLHIN-----VPNID 188
Query: 175 PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
PS+FL +F +L L KV T ++ +M RDWI+TGR+P+GLCGAAL +S HG+
Sbjct: 189 PSLFLERFAHKLNLKNDIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGAALLISTRMHGI 248
Query: 234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + I IV I T++KRL EF+NT + + +F
Sbjct: 249 CINSNTIADIVRISNPTIIKRLAEFKNTSTAQIKASEF 286
>gi|156083907|ref|XP_001609437.1| transcription factor TFIIB subunit [Babesia bovis T2Bo]
gi|154796688|gb|EDO05869.1| transcription factor TFIIB subunit, putative [Babesia bovis]
Length = 519
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 146/255 (57%), Gaps = 15/255 (5%)
Query: 20 QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASR-------ERLME 72
+L C CG VL+++N + +N AG S L G FV T G+ + ++L++
Sbjct: 25 ELVCRNCGAVLQENNVLEAVQYAENPAGNSTLIGRFVPTGGGGMGSLKYSSSQTLDQLVK 84
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ ++++ LNI S E+V A R Y +AV RNFT GR + V CLY ACR+
Sbjct: 85 RGEQNIQRTACHLNI--SSELVTKATRIYSLAVQRNFTMGRNNKHVACCCLYTACRRFKA 142
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGN 191
P+LLIDF++ L + V +G V+++L ++L++ + VDPSIF +F + L L
Sbjct: 143 PYLLIDFADVLQVPVKIIGQVFMKLVRMLHLE-----VPNVDPSIFFERFANELQLKDKV 197
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
++ T ++ +M+RDW+ TGR+P+GLCGAAL V+A HG+ + + +V I T+
Sbjct: 198 DQIITTGVRLIQAMRRDWLCTGRRPTGLCGAALVVAARIHGVPLNAEAVASVVRISHPTI 257
Query: 252 MKRLIEFENTDSGSL 266
MKRL EF T + L
Sbjct: 258 MKRLSEFRGTSTARL 272
>gi|41054045|ref|NP_956183.1| transcription factor IIIB 90 kDa subunit [Danio rerio]
gi|38014698|gb|AAH60523.1| Zgc:63497 [Danio rerio]
Length = 693
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 152/286 (53%), Gaps = 27/286 (9%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C +C P C CG VLED+ +E FV+N+ G S G FV S
Sbjct: 5 CKNCGGSDIDTDPARGSAVCTACGSVLEDNIIVSEVQFVENSGGVSSAVGQFV----SAD 60
Query: 64 GASRERLMEKAF--------------DDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARN 108
G S+ ++ F + RQ+ N + + + A F+ + V+++
Sbjct: 61 GTSKAPVLGSGFHTSLGKESRAQTLQNGKRQIHNLGSQLQLNQHCLDTAFNFFKMVVSKH 120
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I +
Sbjct: 121 LTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLARELCINAPA- 179
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
VDP +++ +F +L G K +V TA +L MKRDW+ TGR+PSGLCGAAL V
Sbjct: 180 ----VDPCLYIPRFA-HMLEFGEKTHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLV 234
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
+A H + + +++ +V +CE TL KRL EFE T + SLTI++FM
Sbjct: 235 AARMHEFRRTVKEVISVVKVCETTLRKRLTEFEETPTSSLTIDEFM 280
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 408 EASD-GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 466
E SD G + ID+ E++ Y+ NE E K +W + N EYL EQ KE A K
Sbjct: 447 EKSDSGELDLDGIDEEEIEKYILNEIEVEAKTELWMKQNEEYLREQKEKEERIAKEKE-- 504
Query: 467 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 526
+ +YK P+ +E A+ TA EA +ML +K
Sbjct: 505 QGTYKEKPKKPSKKREPILAS--------------------------TAGEAIEKMLEQK 538
Query: 527 RLSSKINYDVLEKL 540
++SSKINYDVL L
Sbjct: 539 KISSKINYDVLRDL 552
>gi|403412356|emb|CCL99056.1| predicted protein [Fibroporia radiculosa]
Length = 715
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 161/282 (57%), Gaps = 22/282 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C+ C V + C +CG V+E++ E F + + G + + G+FV
Sbjct: 30 CTDCGGTVIEYDAAAGNGFCVQCGTVVEENAIVNEVAFGETSTGAAMVQGSFVGQGATHA 89
Query: 59 -IQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+ +G SRE+ + A ++Q+ NA+++ E + A R Y +AV FTKG
Sbjct: 90 RMGGPFGNRGSSESREQTIANASRKIQQVANAMHLSEV--VCLSATRLYTLAVEHKFTKG 147
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q L + L
Sbjct: 148 RKSMNVVAVCLYVACRQKETRNYMLIDFSDMLQVNVFELGHTYLQLVQTLNLR-----LP 202
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS ++ +F LL G++ +V A ++A RDW+T GR+P+G+CGA L ++A
Sbjct: 203 LVDPSHYVSRFA-ALLEFGDETHQVALDATRLVARFDRDWMTRGRRPAGICGACLLLAAR 261
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + S ++IV++V I + TL KRL EF T SG+LT+ DF
Sbjct: 262 MNNFRRSVAEIVQVVKIADTTLKKRLDEFRRTPSGALTLADF 303
>gi|50553846|ref|XP_504334.1| YALI0E24035p [Yarrowia lipolytica]
gi|49650203|emb|CAG79933.1| YALI0E24035p [Yarrowia lipolytica CLIB122]
Length = 512
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 150/538 (27%), Positives = 262/538 (48%), Gaps = 71/538 (13%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE------YGASRERLMEKAFD 76
C CG V++D +E TF ++++G + + G+FV QS +G SRE ++K +
Sbjct: 20 CANCGVVVDDAPIVSEVTFGESSSGAAVVHGSFVGADQSGIRNNNFHGESRELTLQKGKN 79
Query: 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 136
+ + +A++I + I+ A R++ +AV +NF KGRR++ V ++CLY+ACR++ + +L
Sbjct: 80 RITALAHAMDIPQ--HIIEKAHRYFVLAVTKNFVKGRRSQYVVSACLYVACRRELRHEML 137
Query: 137 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 196
IDF++ L NV+ +G YLQL + L I + L +DPSI++ +F +L K V +
Sbjct: 138 IDFADKLFCNVFAIGTTYLQLLKTLDIKN----LPLIDPSIYIQRFASKLDFDNAKNVRN 193
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
A ++ M RD++ GR+P+G+ AAL ++A + + SK+ I + E TL +RL
Sbjct: 194 DAVRLVQRMGRDYLVEGRRPAGIAAAALLLAARMNNQRRSKTQIAFYAKVAEETLQRRLD 253
Query: 257 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCR 316
EF +T++G TI F E + + + G+ E + D
Sbjct: 254 EFRHTEAGRQTISVFRMTNIESQSDPPSYQKHRKREQEGIEEKVQDEIDAE-------ME 306
Query: 317 SCYEEFMTISEGLEGGADPPAF----QVAERERMVKASAEENSSFERESDSPFMSRVDK- 371
+ + +E E A F + ER V+ A+ +ERE +
Sbjct: 307 EMMAQMVEKNENPEERAKEALFLEDTPQEKAERTVQNRAQYIIEYERERRRMLNEEANNA 366
Query: 372 -------VQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-DDFE 423
+++P + + QTA EG GD + P V++ SD+ DD E
Sbjct: 367 ATEALLAMKTPHEQMMEDQ---QTAEKEG-GD-ARPPVVES----------LSDLDDDPE 411
Query: 424 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 483
+D L N+EE++ K+ +W +N EYL+EQ K ++
Sbjct: 412 IDSILLNDEERNIKEAVWTTVNMEYLQEQETK------------------------LLKI 447
Query: 484 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
A AA V K K++++++ + + P + A E+T++M+ ++ S KINY+ L+
Sbjct: 448 EADKAAGVYKEPKKRKRQKQKDGEKPAPPKDAAESTKQMVQQRAPSKKINYEKFSGLW 505
>gi|70953761|ref|XP_745961.1| transcription factor IIIb subunit [Plasmodium chabaudi chabaudi]
gi|56526443|emb|CAH75344.1| transcription factor IIIb subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 717
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 155/276 (56%), Gaps = 15/276 (5%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
C +C ++ C RCG VLE++ FV+N G + G F+ ++
Sbjct: 3 CKNCQSSDIETNEGQGEIICLRCGSVLEENKIVESLEFVENNNGAISMVGQFIPSSGTKS 62
Query: 59 IQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
+G SRE ++K + +++++ A N+ S + + A+R Y +A+ RNFT GR
Sbjct: 63 FILSWGIRESREISLQKGYINIQKI--ADNLHLSSQHIEAAQRIYLMALQRNFTMGRNNS 120
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V ASCLY CR++ P +LIDFS+ L V LG +L+L ++L+I+ + +DPS
Sbjct: 121 YVAASCLYTICRREKSPIMLIDFSDILQTPVKPLGKTFLKLLRLLHIS-----VPNIDPS 175
Query: 177 IFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
+FL +F +L L KV T ++ +M RDWI+TGR+P+GLCGA+L ++ HG+
Sbjct: 176 LFLERFAYKLNLKNDIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGASLLIATRIHGITI 235
Query: 236 SKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + I ++V I T++KRL EF+NT+ + +F
Sbjct: 236 NSNTIAEVVRISNPTIIKRLYEFKNTNIAKIKASEF 271
>gi|392559045|gb|EIW52230.1| hypothetical protein TRAVEDRAFT_24512 [Trametes versicolor
FP-101664 SS1]
Length = 703
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 158/285 (55%), Gaps = 22/285 (7%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--T 58
M C+ C V + C CG V+E++ E TF + + G + + G FV
Sbjct: 1 MTVCTDCGGTVIEYDAAAGNGFCVNCGTVVEENTIVNEVTFGETSNGAAMVQGTFVGQGA 60
Query: 59 IQSEYGA---------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
++ G SRE+ + A ++Q+ AL + E + A R Y +AV F
Sbjct: 61 TRARMGGMFGNRGNTESREQTIANASRKIQQVATALRLSEV--VSLAATRLYTLAVEHKF 118
Query: 110 TKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
TKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q L +
Sbjct: 119 TKGRKSMNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLR---- 174
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L VDPS ++ +F LL G++ +V A ++ RDW+T GR+P+G+CGA L +
Sbjct: 175 -LPLVDPSHYISRFA-ALLEFGDETHQVAMDAVRLVQRFDRDWMTKGRRPAGICGACLLL 232
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+A + + S ++IV++V I + TL KRL EF T SG+LT+ DF
Sbjct: 233 AARMNNFRRSVAEIVQVVKIADTTLKKRLDEFRRTPSGALTLADF 277
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 427 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 486
+L ++E K+ +W EMNR+YLE A AAKA L+ S + Q+
Sbjct: 510 FLLTDDEVRIKERVWVEMNRDYLE--------ALAAKAELQES--------EDKQKKTRK 553
Query: 487 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFDDS 544
K R TA E+ R ++ K + S +INY+ L+ LF D+
Sbjct: 554 RRKTNNKPRDASTPH----------GSTAAESVRNLIKKNPKYSKRINYNALKDLFTDA 602
>gi|221040424|dbj|BAH11919.1| unnamed protein product [Homo sapiens]
Length = 584
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 148/491 (30%), Positives = 221/491 (45%), Gaps = 91/491 (18%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA-------- 273
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECD 175
Query: 274 -----------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEF 322
R K+L + ++ L ++S + + + +P A G S ++
Sbjct: 176 PPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDG 235
Query: 323 MT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERV 380
T + L G + E E + A++ N RE + SPE
Sbjct: 236 STEDTASSLCG------EEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGR 289
Query: 381 PKNCTT-----QTASNEGEGDHTKTPGVDATTEASDGSDN----FSDIDDFEVD------ 425
P + TA++ G D + ++ D S + S IDD E+D
Sbjct: 290 PPALGSLLDPLPTAASLGISDSIRECISSQSSNPKDASGDGELDLSGIDDLEIDRRDLSM 349
Query: 426 ----------------GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 469
Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 350 PRCAKAKSQPHFPVLAQYILNESEARVKAELWMRENAEYLREQREKEARIAKEK------ 403
Query: 470 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 529
EL KE + K++ + + A TA EA +ML +K++S
Sbjct: 404 ------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKIS 442
Query: 530 SKINYDVLEKL 540
SKINY VL L
Sbjct: 443 SKINYSVLRGL 453
>gi|395328548|gb|EJF60939.1| hypothetical protein DICSQDRAFT_170484 [Dichomitus squalens
LYAD-421 SS1]
Length = 724
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 156/281 (55%), Gaps = 20/281 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--TIQS 61
C+ C V + C +CG V+E++ E TF + + G + + G+FV ++
Sbjct: 12 CTDCGGTVIEYDAAAGNGFCVQCGTVVEENTIVNEVTFGETSTGAAMVQGSFVAQGATRA 71
Query: 62 EYGA---------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
G SRE+ + A ++Q+ AL + E + A R Y +AV FTKG
Sbjct: 72 RMGGMFGNRGNTESREQTIANASRKIQQVATALRLSEV--VSLAATRLYTLAVEHKFTKG 129
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q L + L
Sbjct: 130 RKSMNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLR-----LP 184
Query: 172 QVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
VDPS ++ +F L G +V A ++ RDW+T GR+P+G+CGA L ++A
Sbjct: 185 LVDPSHYISRFAALLEFGEETHQVAMDAIRLVQRFDRDWMTKGRRPAGICGACLLLAARM 244
Query: 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + S ++IV++V I + TL KRL EF T SG+LT+ DF
Sbjct: 245 NNFRRSVAEIVQVVKIADTTLKKRLEEFRKTPSGALTLADF 285
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 27/118 (22%)
Query: 427 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 486
++ EEE K+ IW EMN++YLE AAK A Q+
Sbjct: 526 FILTEEEVRIKERIWVEMNKDYLEAIAAK-----------------------AEQQEGQE 562
Query: 487 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFDD 543
K RK + R A + TA E+ R ++ K + S +INY+ L++LF D
Sbjct: 563 KEKKSRKRRKTNNKPRDASTPH---GSTAAESVRNLIKKNPKYSKRINYNALKELFTD 617
>gi|403223081|dbj|BAM41212.1| transcription factor IIIb subunit [Theileria orientalis strain
Shintoku]
Length = 520
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 160/293 (54%), Gaps = 21/293 (7%)
Query: 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE 62
+C S + H +L C CG VL+++ + + G + L G F+ T S
Sbjct: 8 YCGSTQIEIYQHL---GELLCQDCGAVLQENAVLEGIQYSETQTGSTAL-GQFIPTAGSR 63
Query: 63 -----YGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRT 115
YG+ SRE+++ + + +++++ + L + E V AKR Y +AV RNFT GR
Sbjct: 64 RLTLAYGSWQSREQVINRGYHNIQRIADYLRLSEQH--VEAAKRIYLLAVQRNFTMGRNN 121
Query: 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDP 175
V + CLY CR++ P LLIDFS+ L V +G ++++L ++L+I+ + VDP
Sbjct: 122 LHVASCCLYTICRREKTPHLLIDFSDILQTPVKTIGQIFMKLVRMLHIS-----VPNVDP 176
Query: 176 SIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
SIF +F +L L +K+ T I+ +M RDWI TGR+P+GLCGAAL V+A HG+
Sbjct: 177 SIFFERFATQLHLKDNIQKIIVTGNRIIQAMNRDWICTGRRPTGLCGAALVVAARFHGIH 236
Query: 235 FSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 287
S + +V I T++KRL EF+ T + L + +F K +L NLP
Sbjct: 237 LSAEAVSSVVRISHPTILKRLSEFKETSTAHLKVSEF--DKVDLESLPKLNLP 287
>gi|378754531|gb|EHY64562.1| transcription initiation factor IIB [Nematocida sp. 1 ERTm2]
Length = 513
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 152/251 (60%), Gaps = 8/251 (3%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG V+E+ ++ F ++ G S L G +V T ++ S + + +R +
Sbjct: 22 CTSCGLVIEESTIVSDVQFAQDTKGSSILQGQYVSTGDTKKLVSGKFITTNHTTTIRSIA 81
Query: 83 NALN--IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
++ +G D ++ A R+Y +++ NFTKGR+T+ + A+CLY+ CR++ P +L+DF+
Sbjct: 82 KSIGEALGIGDSQINSAMRWYNLSLQFNFTKGRKTQVLLAACLYITCREEETPHMLVDFA 141
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
L INV+++G+++L+L ++L I + VDPS+F+ +F +L N+ + TA
Sbjct: 142 YILRINVFKIGSIFLKLIRLLNIT-----MPLVDPSLFVPRFCSKL-SLNNQSIGKTALR 195
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260
++A M RDWI GRKP+G+CGAA+ +++ HG + + D+ V +CEAT+ KRL E +
Sbjct: 196 LIARMDRDWIVIGRKPAGICGAAILIASRIHGNERTVEDVAGAVRVCEATINKRLAELKE 255
Query: 261 TDSGSLTIEDF 271
T + +L+I +F
Sbjct: 256 TATANLSINEF 266
>gi|66358198|ref|XP_626277.1| cyclin domain protein [Cryptosporidium parvum Iowa II]
gi|46227281|gb|EAK88231.1| cyclin domain protein [Cryptosporidium parvum Iowa II]
Length = 648
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 158/276 (57%), Gaps = 18/276 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
CSS + V R + C CG VLE++ F + + G Q+ G+FV R
Sbjct: 11 CSSASIEVHEGR---GETICTNCGTVLEENTMVEGLQFSECSNGSMQMVGHFVPSSGVRG 67
Query: 59 IQSEYG--ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
YG SRE ++++ + +++++ + L + S + A+R + +AV R+FT GR
Sbjct: 68 FAMVYGNRESREHVLQRGYHNLQRIADQLRLSSSH--IESAQRVFLMAVQRSFTIGRNNM 125
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V ++CLY CR++ P +LIDFS+ L V LG V+++L ++L + + +DPS
Sbjct: 126 HVASACLYAICRREKTPHMLIDFSDVLQTPVKVLGQVFMKLLRLLRLH-----VPNIDPS 180
Query: 177 IFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
+F+ +F ++ G V T I+ ++ R+WITTGR+P+GLCGAAL +SA HG+
Sbjct: 181 MFMERFAAQMKLGEKTHAVAATGVRIVQALTRNWITTGRRPTGLCGAALLISARYHGIPV 240
Query: 236 SKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
S S+I +IV I TL+KRL EF++T + LT ++F
Sbjct: 241 SSSEIAQIVRISSPTLLKRLAEFKHTSTAQLTADEF 276
>gi|323508609|dbj|BAJ77198.1| cgd5_3540 [Cryptosporidium parvum]
gi|323510533|dbj|BAJ78160.1| cgd5_3540 [Cryptosporidium parvum]
Length = 646
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 158/276 (57%), Gaps = 18/276 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
CSS + V R + C CG VLE++ F + + G Q+ G+FV R
Sbjct: 9 CSSASIEVHEGR---GETICTNCGTVLEENTMVEGLQFSECSNGSMQMVGHFVPSSGVRG 65
Query: 59 IQSEYG--ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
YG SRE ++++ + +++++ + L + S + A+R + +AV R+FT GR
Sbjct: 66 FAMVYGNRESREHVLQRGYHNLQRIADQLRLSSSH--IESAQRVFLMAVQRSFTIGRNNM 123
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V ++CLY CR++ P +LIDFS+ L V LG V+++L ++L + + +DPS
Sbjct: 124 HVASACLYAICRREKTPHMLIDFSDVLQTPVKVLGQVFMKLLRLLRLH-----VPNIDPS 178
Query: 177 IFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
+F+ +F ++ G V T I+ ++ R+WITTGR+P+GLCGAAL +SA HG+
Sbjct: 179 MFMERFAAQMKLGEKTHAVAATGVRIVQALTRNWITTGRRPTGLCGAALLISARYHGIPV 238
Query: 236 SKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
S S+I +IV I TL+KRL EF++T + LT ++F
Sbjct: 239 SSSEIAQIVRISSPTLLKRLAEFKHTSTAQLTADEF 274
>gi|67622824|ref|XP_667830.1| transcription factor IIIb subunit [Cryptosporidium hominis TU502]
gi|54658996|gb|EAL37598.1| transcription factor IIIb subunit [Cryptosporidium hominis]
Length = 646
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 158/276 (57%), Gaps = 18/276 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
CSS + V R + C CG VLE++ F + + G Q+ G+FV R
Sbjct: 9 CSSASIEVHEGR---GETICTNCGTVLEENTMVEGLQFSECSNGSMQMVGHFVPSSGVRG 65
Query: 59 IQSEYG--ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
YG SRE ++++ + +++++ + L + S + A+R + +AV R+FT GR
Sbjct: 66 FAMVYGNRESREHVLQRGYHNLQRIADQLRLSSSH--IESAQRVFLMAVQRSFTIGRNNM 123
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V ++CLY CR++ P +LIDFS+ L V LG V+++L ++L + + +DPS
Sbjct: 124 HVASACLYAICRREKTPHMLIDFSDVLQTPVKVLGQVFMKLLRLLRLH-----VPNIDPS 178
Query: 177 IFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
+F+ +F ++ G V T I+ ++ R+WITTGR+P+GLCGAAL +SA HG+
Sbjct: 179 MFMERFAAQMKLGEKTHAVAATGVRIVQALTRNWITTGRRPTGLCGAALLISARYHGIPV 238
Query: 236 SKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
S S+I +IV I TL+KRL EF++T + LT ++F
Sbjct: 239 SSSEIAQIVRISSPTLLKRLAEFKHTSTAQLTADEF 274
>gi|241730148|ref|XP_002412272.1| transcription initiation factor IIB, putative [Ixodes scapularis]
gi|215505511|gb|EEC15005.1| transcription initiation factor IIB, putative [Ixodes scapularis]
Length = 619
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 151/281 (53%), Gaps = 19/281 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------- 56
C C P C CG VLED +E F +NA G S+ G +
Sbjct: 7 CQHCGCSEIDTDPARGDAVCTNCGSVLEDSIIVSEIQFEENAHGGSRAIGQLISADGTSG 66
Query: 57 RTIQS-EYGA---SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
R++ ++G+ SR ++KA + Q+ L + + + A FY +A+ R+ T+G
Sbjct: 67 RSLGGFQHGSGKESRALTLQKARRKIVQVAERLRLNQ--HCIDTAFNFYKMALTRHLTRG 124
Query: 113 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ 172
RR V A+C+Y+ CR + P +L+D S+ + +NVYELG +L+L L I +
Sbjct: 125 RRHSHVVAACIYMVCRIEGTPHMLLDLSDVVQVNVYELGKTFLKLSSALCIN-----IPA 179
Query: 173 VDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 231
+DP +++ +F L +V TA ++ MKRDW+ TGR+PSGLCGAAL V++ H
Sbjct: 180 IDPCLYIVRFAHHLEFADKTHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVASRLH 239
Query: 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
+ D+V++V +CE T+ KRL EF +T S LT+E+FM
Sbjct: 240 DFSRTIKDLVRVVKVCETTIRKRLTEFGDTPSSRLTLEEFM 280
>gi|170109264|ref|XP_001885839.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639110|gb|EDR03383.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 477
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 158/282 (56%), Gaps = 22/282 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------R 57
C+ C V + C +CG V+E++ E F + + G + + G+FV
Sbjct: 1 CNDCGGTVIEYDHAAGNGFCIKCGTVVEENAIVNEVAFGETSNGAAMVQGSFVGQGATHA 60
Query: 58 TIQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
I YG SRE+ + ++ + N L + S+ + A R Y +AV FTKG
Sbjct: 61 RISGPYGNRGNNESREQTIANGAKKIQSIANILRL--SEVVCLAATRMYTLAVEHKFTKG 118
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q L + L
Sbjct: 119 RKSLNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLR-----LP 173
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS ++ +F LL G++ KV A ++ RDW+T GR+P+G+CGAAL ++A
Sbjct: 174 LVDPSHYISRFAA-LLEFGDETHKVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLAAR 232
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + S +IV++V I + TL KRL EF+ T SGSLT+ DF
Sbjct: 233 MNNFRRSVEEIVQVVKIADTTLKKRLDEFKATPSGSLTLADF 274
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 26/129 (20%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D +D+ E+D ++ +E+E K+ +W E+N+EYLE A K + S+ C
Sbjct: 374 DELLGLDEAELDRFILSEDEVRVKERVWVELNKEYLEALAGKSFSEC-------QSFPLC 426
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 532
+GL RK + R A G T E+ R +L K + S +I
Sbjct: 427 LQGLS---------------RRKGNNKPRDASTAAGG---TTAESVRNLLKKNPKYSKRI 468
Query: 533 NYDVLEKLF 541
NYD L+ LF
Sbjct: 469 NYDALKDLF 477
>gi|401841983|gb|EJT44282.1| BRF1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 597
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 164/274 (59%), Gaps = 16/274 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF +++AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGESSAGAAVVQGSFIGAGQSHASFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + +++V + H+ E
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEVVAVSHVAEE 253
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
TL +RL EF+NT + L+++DF R+ ++ +G A
Sbjct: 254 TLQQRLNEFKNTKAAKLSVQDF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 407 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 462
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 454 SKVSDDPDNLGDVDDEELNAHLLNEEASKLKERIWVGLNADFLLEQESKRLKQEADIATG 513
Query: 463 KAAL---EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 517
++ +N + + + AAAA + ++K AA A+ +G TA +
Sbjct: 514 NTSVKKKRTRRRNNTRNNEPTKSVDAAAAIGLMSDLQDKSGLHAALKAAEENGDFTTA-D 572
Query: 518 ATRRMLTKKRLSSKINYDVLEKLF 541
+ + ML K S KINYD ++ LF
Sbjct: 573 SVKNMLQKASFSKKINYDAIDGLF 596
>gi|390600638|gb|EIN10033.1| cyclin-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 584
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 159/285 (55%), Gaps = 25/285 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
C+ C V + C CG V+E++ +E TF + ++G + + G++V R
Sbjct: 6 CAECGGSVIEYDAAAGNGFCVACGTVVEENTIVSEVTFGETSSGAAMVQGSYVAQGATRA 65
Query: 59 IQSEY-------GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+ G SRE+ + A ++ + L + ES I H A R Y +AV FTK
Sbjct: 66 RMGGFFGNRGGDGESREQTIANASRKIQSVAGILRLSES--ICHAATRLYTLAVEHKFTK 123
Query: 112 GRRTEQVQASCLYLACRQK-SKPFLLIDFSNYL--NINVYELGAVYLQLCQVLYIADESN 168
GR++ V A CLY+ACRQK ++ ++LIDFS+ L ++NV+ELG YLQL Q L +
Sbjct: 124 GRKSMNVVAVCLYVACRQKETRNYMLIDFSDLLQASVNVFELGHTYLQLVQTLNLR---- 179
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L VDPS ++ +F LL G + +V A ++ RDW+T GR+P+G+CGAAL +
Sbjct: 180 -LPLVDPSHYISRFA-ALLEFGEETHQVATDAVRLVQRFDRDWMTRGRRPAGICGAALLL 237
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+A + + S +IV++V I + TL KR+ EF T SG LT+ DF
Sbjct: 238 AARMNNFRRSIEEIVQVVKIADVTLRKRMEEFRKTPSGELTLADF 282
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 39/131 (29%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D +D+ E+D ++ EEE ++ +W E+N++YLE
Sbjct: 395 DELQGLDEEELDQFIMTEEEVKIRERVWVELNKDYLE----------------------- 431
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 532
A A + RK + R A + TA E+ R ++ K + S +I
Sbjct: 432 ------------AIAGTYSIRRKANNKPRDASTPH---GSTAAESARNLVKKNPKFSKRI 476
Query: 533 NYDVLEKLFDD 543
NYD L+ LF D
Sbjct: 477 NYDALKDLFID 487
>gi|254580311|ref|XP_002496141.1| ZYRO0C11440p [Zygosaccharomyces rouxii]
gi|238939032|emb|CAR27208.1| ZYRO0C11440p [Zygosaccharomyces rouxii]
Length = 588
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 164/287 (57%), Gaps = 25/287 (8%)
Query: 1 MVWCSSC-----ARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNF 55
M+ C +C + VT ++ L C CG V ED+ +E TF +N++G + + G++
Sbjct: 1 MLTCKNCKSTDFVKDVTN---ANNDLVCQSCGTVAEDNPIVSEVTFGENSSGAAVVQGSY 57
Query: 56 VRTIQS-----EYGAS-----RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV 105
+ QS +G S R+ + A+ +R + ALNI E I A ++Y +A+
Sbjct: 58 IGKGQSGASMSAHGGSSALESRQVTLNNAYRKLRAVSFALNIPEY--ITDAAHQWYKLAL 115
Query: 106 ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIAD 165
NF +GRR++ V A+CLY+ACR++ +LIDFS+ L ++VY +GA +L++ + L I
Sbjct: 116 HYNFVQGRRSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLRMVKRLNITK 175
Query: 166 ESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAAL 224
L DPS+F+ F ++L G K KV A + M RDW+ GR+P+G+ GA +
Sbjct: 176 ----LPLADPSLFIQHFAEKLDLGDKKIKVAKDAVKLAQRMSRDWMYEGRRPAGIAGACV 231
Query: 225 YVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
++ + L+ + S+IV + H+ E T+ +RL EF+NT +G L+I +F
Sbjct: 232 LLACRMNNLRRTHSEIVAVSHVAEETIQQRLNEFKNTKTGKLSINEF 278
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 407 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 462
++ SD ++N D+DD E++ L +EE K+ IW +N EYL EQ +K EA AA
Sbjct: 450 SKVSDDAENLDDVDDDELESQLLDEEASKLKERIWIGINGEYLLEQESKRLKLEADIAAG 509
Query: 463 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 522
+ + N + ++ A + + A+ G TA ++ + M
Sbjct: 510 NTSSKRKRGNRRRKRKTEMDVDQAISTMSSIDDPTSLHSALQAAEQKGDFSTA-DSVKNM 568
Query: 523 LTKKRLSSKINYDVLEKLF 541
L K S KINYD ++ LF
Sbjct: 569 LQKASFSKKINYDAIDGLF 587
>gi|156845831|ref|XP_001645805.1| hypothetical protein Kpol_1010p65 [Vanderwaltozyma polyspora DSM
70294]
gi|156116473|gb|EDO17947.1| hypothetical protein Kpol_1010p65 [Vanderwaltozyma polyspora DSM
70294]
Length = 577
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 159/265 (60%), Gaps = 17/265 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA--------SR 67
++ L C CG V ED+ +E TF ++++G + + G+F+ Q+ +G+ SR
Sbjct: 21 NNDLVCTGCGMVSEDNPIVSEVTFGESSSGAAVVQGSFISGDQAHAAFGSHGGSSALESR 80
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E + A +R + +AL I E I A ++Y +A+ +NF +GRR++ V ASCLY+AC
Sbjct: 81 ETTINNARRKLRAVSHALGIPEY--ITDAAHQWYKLALHQNFVQGRRSQNVIASCLYIAC 138
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ +LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L
Sbjct: 139 RKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKRLHITN----LPLADPSLFIQHFAEKLD 194
Query: 188 PGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G K KV A + M +DW+ GR+P+G+ GA + ++ + L+ + S+IV + H+
Sbjct: 195 LGDKKIKVVKDAVKLAQRMSKDWMYEGRRPAGIAGACILLACRMNNLRRTHSEIVAVSHV 254
Query: 247 CEATLMKRLIEFENTDSGSLTIEDF 271
E TL +RL EF+NT S L+I++F
Sbjct: 255 AEETLQQRLNEFKNTKSAKLSIKEF 279
>gi|345568504|gb|EGX51397.1| hypothetical protein AOL_s00054g96 [Arthrobotrys oligospora ATCC
24927]
Length = 589
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 155/267 (58%), Gaps = 21/267 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---------YGA--S 66
D + C CG V+ + +E TF + ++G + + G++V Q +GA +
Sbjct: 20 DDKRICTSCGTVVTESFIVSEITFGETSSGAAVVQGSYVGADQKHARSSGPFRRHGAAET 79
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE+++ + Q+ +AL++ D V A R++ +AV NF +GR+T+ V A CLY+A
Sbjct: 80 REQVISNGRRKLNQLASALSV--HDRFVETAARYFTLAVTHNFIQGRKTQHVVACCLYIA 137
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR +LIDFS+ L +NV+ LG+ YL+L + L + + Q+DP +++ +F R
Sbjct: 138 CRLDKSAHMLIDFSDILQLNVFSLGSTYLKLVKTLNLN-----IPQLDPELWIRRFA-RH 191
Query: 187 LPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G+K +VC A I+ M RDWI GR+P+G+CGAA+ ++A + + + +++V IV
Sbjct: 192 LEFGDKTQQVCRDAIKIVQRMDRDWIMEGRRPAGVCGAAIIIAARMNNFRRTVTEVVYIV 251
Query: 245 HICEATLMKRLIEFENTDSGSLTIEDF 271
+ T+ KRL EF+NT S LT+ +F
Sbjct: 252 KVAGMTINKRLEEFKNTKSSELTVSEF 278
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 66/161 (40%), Gaps = 23/161 (14%)
Query: 383 NCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWE 442
N TQTA + + + + + S DN D+DD E++ + + EE K IW
Sbjct: 448 NPETQTAVEDIRRERLRQQALLPPSTVSADPDNLEDVDDDEIESVMMSPEEVALKTKIWY 507
Query: 443 EMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKR 502
E NREYL Q AK A A + A G+ A S +
Sbjct: 508 EYNREYLLTQEAKRLKAEADEKA----------GIGKKARKKRGKAKPRDSSFPDM---- 553
Query: 503 AAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 543
PA A EA R M+ KK S KINY L+ LF+D
Sbjct: 554 --------PASPA-EAAREMMKKKTFSRKINYAALDSLFED 585
>gi|449544216|gb|EMD35190.1| hypothetical protein CERSUDRAFT_116658 [Ceriporiopsis subvermispora
B]
Length = 662
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 159/285 (55%), Gaps = 22/285 (7%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--T 58
M C+ C V + C +CG V+E++ E F + ++G + + G+FV
Sbjct: 1 MTVCTDCGGTVIEYDAAAGNGFCVQCGTVVEENTIVNEVVFGETSSGAAMVQGSFVGQGA 60
Query: 59 IQSEYGA---------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
+++ G SRE+ + A ++Q+ A+ + E ++ A R Y +AV F
Sbjct: 61 TRAKMGGPFGNRGNSESREQTIANASRKIQQVATAMRLSEVVQLA--ATRLYTLAVEHKF 118
Query: 110 TKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
TKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q L +
Sbjct: 119 TKGRKSMNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLR---- 174
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L VDPS ++ +F LL G + +V A ++A RDW+ GR+P+G+CGA L +
Sbjct: 175 -LPLVDPSHYISRFA-ALLEFGEETHQVALDATRLVARFDRDWLARGRRPAGICGACLLL 232
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+A + + S ++V++V I + TL KRL EF T SG L++ DF
Sbjct: 233 AARMNNFRRSVEEVVQVVKIADTTLRKRLEEFRKTPSGQLSLADF 277
>gi|162287069|ref|NP_001088063.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus laevis]
gi|52354750|gb|AAH82860.1| LOC494758 protein [Xenopus laevis]
Length = 660
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 148/262 (56%), Gaps = 17/262 (6%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGASRERLME 72
C CG VLED+ +E FV+ A G S G FV + S +E +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVEGAGGVSSAVGQFVSSECSGKTPSLGTGFHTNVGKESRAQ 84
Query: 73 KAFDDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ RQ+ N + + + + A F+ +AV+++ T+GR+ V A+CLYL CR +
Sbjct: 85 TLQNGKRQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEG 144
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG- 190
P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 145 TPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGDK 199
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 250
N +V TA ++ MKRDW+ TGR+PSGLCGAAL V++ H + + +++++V +CE+T
Sbjct: 200 NHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVASRMHDFRRTIKEVIRVVKVCEST 259
Query: 251 LMKRLIEFENTDSGSLTIEDFM 272
L KRL EFE+T + LT+++FM
Sbjct: 260 LRKRLTEFEDTPTSQLTVDEFM 281
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 27/132 (20%)
Query: 409 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 468
A DG + + IDD E+D Y+ NE+E K ++W + N +YL EQ KE A K
Sbjct: 434 AGDGELDLNGIDDNEIDRYILNEKEAEIKTVLWMKENADYLREQKEKEERIAKEKEL--G 491
Query: 469 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 528
YK + R K KR A + A TA EA +ML +K++
Sbjct: 492 IYK---------------------EQRPRKPSKRRAPIQ----ASTAGEAIEKMLEQKKI 526
Query: 529 SSKINYDVLEKL 540
SSKINYDVL L
Sbjct: 527 SSKINYDVLRDL 538
>gi|255719280|ref|XP_002555920.1| KLTH0H00924p [Lachancea thermotolerans]
gi|238941886|emb|CAR30058.1| KLTH0H00924p [Lachancea thermotolerans CBS 6340]
Length = 571
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 157/265 (59%), Gaps = 17/265 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA--------SR 67
++ L C CG V ED+ +E TF ++++G + + G++V QS +G SR
Sbjct: 20 NNDLVCKDCGTVSEDNPIVSEVTFGESSSGAAVVHGSYVGAGQSHAAFGPRGGSSALESR 79
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+ + A +R + +AL I E + A ++Y +A++ NF +GRR++ V A+CLY+AC
Sbjct: 80 QATINNARRKLRAVSHALGIPEY--VTDAATQWYTLALSNNFVQGRRSQNVIAACLYIAC 137
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ +LIDFS+ L ++VY +GA +L++ + L+I L DPS+F+ F ++L
Sbjct: 138 RKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKALHITK----LPLADPSLFIQHFAEKLD 193
Query: 188 PGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G K KV A + M RDW+ GR+P+G+ GA L ++ + L+ + S+IV + H+
Sbjct: 194 LGDKKIKVVKDAVKLAQRMARDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAVSHV 253
Query: 247 CEATLMKRLIEFENTDSGSLTIEDF 271
E TL +RL EF++T SG L+I +F
Sbjct: 254 AEETLQQRLNEFKSTKSGKLSINEF 278
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Query: 407 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 466
++ +D ++ D+DD E+D L +EE K+ IW +N ++L EQ +K A A+
Sbjct: 435 SKVADDPEDLQDVDDEELDSQLLDEEASKLKERIWIGINGDFLLEQESKRLKQEADMASG 494
Query: 467 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALEATRRMLT 524
AS K G + AA+ A V K+ AA A+++G TA + + M+
Sbjct: 495 NASVKK--RGGPRRKRKAASDADGVLADIKDDSGLHAALKLAEDTGDFTTA-DNVKNMIQ 551
Query: 525 KKRLSSKINYDVLEKLFDDS 544
K S KINY+ ++ LF S
Sbjct: 552 KSSFSKKINYNAIDGLFGSS 571
>gi|296424786|ref|XP_002841927.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638179|emb|CAZ86118.1| unnamed protein product [Tuber melanosporum]
Length = 553
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 106/321 (33%), Positives = 180/321 (56%), Gaps = 25/321 (7%)
Query: 2 VWCSSC-ARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ 60
+ C SC + + T +L C CG V+ D +E +F + ++G +++ G++V Q
Sbjct: 3 ITCPSCGSSNPTDFDDSTGRLVCTNCGHVVNDSFIVSEISFGETSSGAARVQGSYVAEGQ 62
Query: 61 SEYGA------------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
+ G SRE++++ + ++ A+N E A+R++ ++V N
Sbjct: 63 THAGGGGGRFRSGNSLESREQIIQNGRRKIVELAGAVNCPE--HFADHAQRWFTLSVTHN 120
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
F +GR+T+ V A CLY+ CR + +LIDFS+ LN+NV+ LG YLQL Q+L +
Sbjct: 121 FNRGRKTQFVIACCLYIVCRLEKSSHMLIDFSDILNVNVFSLGHTYLQLVQILEVR---- 176
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
L +DP++++++F L G + KV + A I+ M RDW+ GR+PSG+CGAAL ++
Sbjct: 177 -LPHIDPTVYVYRFAKHLDFGSEQTKVANDALRIIQRMSRDWMVQGRRPSGICGAALILA 235
Query: 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 287
A + + S ++V +V + + T+ KRL EF++T SG LT+E+F R L + A + P
Sbjct: 236 ARMNNFRRSVREVVYVVKVADLTIQKRLDEFKDTKSGDLTVEEF--RNIWLEQ--AHDPP 291
Query: 288 NNGPKVSGMNEVLCKHKDTGK 308
+ GPK S ++ + D G+
Sbjct: 292 SYGPKASKKHKRVRDVNDDGE 312
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 28/122 (22%)
Query: 422 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 481
FEV L EEE++ K+ IW E N++YL ++ K E +N
Sbjct: 459 FEVQNALLTEEERNLKEKIWVEFNKDYLLKRLKK-----------ETDLRN--------- 498
Query: 482 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
+ K+ +++++ + ++ + A T ++ + ML ++ S KINY +E LF
Sbjct: 499 --------GIIKTARKRKRNKPRDSNSEDMAATPADSAKNMLMRRSYSKKINYKAIEGLF 550
Query: 542 DD 543
+D
Sbjct: 551 ED 552
>gi|323451551|gb|EGB07428.1| hypothetical protein AURANDRAFT_71825 [Aureococcus anophagefferens]
Length = 1025
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 149/283 (52%), Gaps = 31/283 (10%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE------------------- 62
C RCG V E+ + F ++ G S + G FV ++
Sbjct: 412 VCVRCGTVCEESTIVSSIEFAESGGGASSVVGQFVSASCTKPFGGLGGSGWGGSRGGGRP 471
Query: 63 ----YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+SRE + + Q+ ++L +G V A R +G+A RNFT+GR+T V
Sbjct: 472 RYGFLRSSRETTLATGRRKIAQVASSLRLGA--HFVDGAHRLFGMAAQRNFTQGRKTLHV 529
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
+CLY+ CR++ +LIDFS+ L +NVY LGA +L+ ++L + L +DPS++
Sbjct: 530 VCACLYVMCRREKSAHMLIDFSDVLQVNVYALGATFLKFRRLLNLE-----LPIIDPSLY 584
Query: 179 LHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+H+F +L G V TA ++ MKRDWI TGR+P+G+C AAL V A HG ++
Sbjct: 585 IHRFAAKLELGDKCGAVATTALRVVQRMKRDWIETGRRPAGVCAAALLVGARAHGFHRTQ 644
Query: 238 SDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHE 280
D+VK + +C T+ KRL +F+ T + L++ +F R +L E
Sbjct: 645 DDVVKALRVCGMTVAKRLADFQATPAAQLSLAEFNRRSDDLAE 687
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Query: 416 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 475
F+D+ D E+DG++ +EE K IW MN++YL ++ K+ AAA A P+
Sbjct: 822 FADVADDEIDGFILTDEEVKQKSEIWTTMNKDYLAQRDEKDKLAAARAEASAG-----PD 876
Query: 476 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 535
G + AK ++ +A A+ S ++TA EA ++ KKR S KINY
Sbjct: 877 G---------GPSDKAAKRGRKASAGKAKGARASKDSRTAKEALIDVVEKKRFSKKINYG 927
Query: 536 VLEKLFDD 543
VLE +F D
Sbjct: 928 VLEGIFGD 935
>gi|209877443|ref|XP_002140163.1| transcription factor IIIB subunit BRF-1 [Cryptosporidium muris
RN66]
gi|209555769|gb|EEA05814.1| transcription factor IIIB subunit BRF-1, putative [Cryptosporidium
muris RN66]
Length = 611
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 156/276 (56%), Gaps = 15/276 (5%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
C C+ + C CG VLE++ F +++ G Q+ G+FV R
Sbjct: 5 CPQCSSLSIETHEGRGETICTNCGTVLEENTMVEGFQFSESSNGSIQMVGHFVPSSGVRG 64
Query: 59 IQSEYG--ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
YG SRE ++++ + +++++ + L++ S + A+R + +AV RNFT GR
Sbjct: 65 FALVYGNRESREHVLQRGYHNLQRIADQLHLSASH--IESAQRVFLMAVQRNFTIGRNNM 122
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V ++CLY CR++ P +LIDFS+ L V LG V+++L ++L + + +DPS
Sbjct: 123 YVASACLYAICRREKTPHMLIDFSDVLQAPVKVLGQVFMKLLRLLRLH-----VPNIDPS 177
Query: 177 IFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
+F+ +F ++ L + T I+ ++ RDWITTGR+P+GLCGAAL +SA HG+
Sbjct: 178 MFMERFAAQMNLGNKTHSIAATGVRIVQALTRDWITTGRRPTGLCGAALLISARYHGIPV 237
Query: 236 SKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
S ++I +IV I TL+KRL EF++T + LT +F
Sbjct: 238 SSNEIAQIVRISSPTLLKRLAEFKHTSTAQLTAAEF 273
>gi|444316962|ref|XP_004179138.1| hypothetical protein TBLA_0B08030 [Tetrapisispora blattae CBS 6284]
gi|387512178|emb|CCH59619.1| hypothetical protein TBLA_0B08030 [Tetrapisispora blattae CBS 6284]
Length = 549
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 161/295 (54%), Gaps = 14/295 (4%)
Query: 4 CSSC--ARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
C C V H ++ L C CG V ED+ +E TF ++AAG + + G+FVR Q+
Sbjct: 5 CGKCKSTEFVRDHANANNDLVCVGCGVVFEDNPIVSEVTFGESAAGAAVVHGSFVRADQA 64
Query: 62 EYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
ASRE + A +R + +AL I E + A ++Y +A+A F +GRR +
Sbjct: 65 ASTGRGALASRETTLLHARRRIRAVAHALAIPE--HVTDAAFQWYKLALAHGFVRGRRAQ 122
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V A+CLY+ACR++ P +L+DFS L ++VY +GA +LQL + L++ D L DPS
Sbjct: 123 NVVAACLYVACRKERTPHMLVDFSARLQVSVYAVGATFLQLVRKLHVQD----LPLADPS 178
Query: 177 IFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
IF+ FT+RL G + +V A + M RD + GR+P+G+ GA + ++ + L+
Sbjct: 179 IFIQHFTERLALGSRQVRVARDAVRLAQRMARDGMQDGRRPAGVAGACVLLACRMNNLRR 238
Query: 236 SKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNG 290
+ ++I + H+ E TL +RL EF T + +++ F A + E + P +
Sbjct: 239 THAEIAAVSHVAEETLQQRLGEFRATGAAKMSVAGFRASTSDTREDSDTDEPGSA 293
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 26/135 (19%)
Query: 410 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 469
SD ++ D+DD E+D L +EE K+ +W +N +YL EQ
Sbjct: 437 SDDPEDLGDVDDEELDSQLLDEESSAAKERVWLHLNADYLLEQ----------------- 479
Query: 470 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSG---PAQTALEATRRMLTKK 526
E + QE A AA A RK++ ++ A + G TA ++ + ML K
Sbjct: 480 -----ENKRLKQE-ADEAAGNTAHVRKKRTRQVAKIEPHDGLQIEPDTAADSVKSMLQKA 533
Query: 527 RLSSKINYDVLEKLF 541
S KINYD ++ LF
Sbjct: 534 SFSKKINYDAIDGLF 548
>gi|374107864|gb|AEY96771.1| FAEL213Wp [Ashbya gossypii FDAG1]
Length = 571
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 156/260 (60%), Gaps = 16/260 (6%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA-------SRERLME 72
C CG V ED+ +E TF + ++G + + G+FV Q+ +G SRE +
Sbjct: 24 VCKACGVVSEDNPIVSEVTFGETSSGAAVVQGSFVAAGQAHAAFGPHGTSALESREATLN 83
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
A ++ + +AL I E + A ++Y +A++ NF +GRR++ V A+CLY+ACR++
Sbjct: 84 NARRKLQAVSHALQIPEY--VREAAFQWYQLALSNNFVQGRRSQNVIAACLYVACRKEKT 141
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 192
+LIDFS+ L ++VY +GA +L++ +VL+I L DPS+F+ F ++L G K
Sbjct: 142 HHMLIDFSSRLQVSVYSIGATFLKMVKVLHIVK----LPLADPSLFIQHFAEKLDLGDKK 197
Query: 193 -KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
KV A + +M +DW+ GR+P+G+ GA L ++ + L+ + S++V + H+ E TL
Sbjct: 198 IKVVKDAVKLAQTMSKDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEVVAVSHVAEETL 257
Query: 252 MKRLIEFENTDSGSLTIEDF 271
+RL EF+NT SG+L+I+ F
Sbjct: 258 QQRLNEFKNTKSGNLSIKQF 277
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 9/139 (6%)
Query: 407 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 462
++ SD +N D+DD E++ ++ +EE K+ IW +N EYL EQ +K EA A+
Sbjct: 436 SKVSDDPENLEDVDDEELEAHILDEEASKLKERIWIGINGEYLLEQESKRLKLEADLASG 495
Query: 463 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 522
+L+ + A+ L A AAA + Q AEA SG TA E+ + M
Sbjct: 496 NTSLKKKRSSKKRKTDASNLLPEALAAADPTGIQPALQ--VAEA--SGDLTTA-ESVKNM 550
Query: 523 LTKKRLSSKINYDVLEKLF 541
L K S KINYD ++ LF
Sbjct: 551 LQKTSFSKKINYDAIDGLF 569
>gi|395861899|ref|XP_003803211.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Otolemur garnettii]
Length = 678
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 149/267 (55%), Gaps = 27/267 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+++ T+GRR V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRRMAHVTAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVK 254
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFM 272
+CE+TL KRL EFE+T + LTI++FM
Sbjct: 255 VCESTLRKRLTEFEDTPTSQLTIDEFM 281
>gi|367016367|ref|XP_003682682.1| hypothetical protein TDEL_0G01040 [Torulaspora delbrueckii]
gi|359750345|emb|CCE93471.1| hypothetical protein TDEL_0G01040 [Torulaspora delbrueckii]
Length = 545
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 155/265 (58%), Gaps = 17/265 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA--------SR 67
++ L C CG V ED+ +E TF + + G + + G+F+ Q+ +G+ SR
Sbjct: 20 NNDLVCKNCGVVSEDNPIVSEVTFGETSGGAAVVQGSFIGAGQTHASFGSHGGSSALESR 79
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E + A +R + +ALNI E I A ++Y +A+A NF +GRR++ V A+CLY+AC
Sbjct: 80 EATLNNARRKLRAVSHALNIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIAACLYVAC 137
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ +LIDFS+ L + VY +GA +L++ + L+I L DPS+F+ F ++L
Sbjct: 138 RKEKTHHMLIDFSSRLQVGVYSIGATFLKMVKRLHITK----LPLADPSLFIQHFAEKLD 193
Query: 188 PGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G K KV A + M RDW+ GR+P+G+ GA + ++ + L+ + S+IV + H+
Sbjct: 194 LGDKKIKVVRDAVKLAQRMSRDWMYEGRRPAGIAGACILLACRMNNLRRTHSEIVAVSHV 253
Query: 247 CEATLMKRLIEFENTDSGSLTIEDF 271
E T+ +RL EF+ T +G L+I +F
Sbjct: 254 AEETIQERLNEFKGTKAGKLSINEF 278
>gi|336369209|gb|EGN97551.1| hypothetical protein SERLA73DRAFT_75218 [Serpula lacrymans var.
lacrymans S7.3]
Length = 785
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 158/282 (56%), Gaps = 23/282 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C+ C V + C +CG V+E++ +E TF + +AG + + G++V
Sbjct: 144 CTDCGGTVIEYDAAAGNGFCVKCGTVVEENTIVSEVTFGETSAGAAMVQGSYVGQGSTHA 203
Query: 59 -IQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+ +G SRE+ + ++ AL + E + A R Y +AV FTKG
Sbjct: 204 RMNGPFGNRGSSESREQTIANG-KKIQSFAAALRLSEV--VSLAATRLYTLAVEHKFTKG 260
Query: 113 RRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
R++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG YLQL Q L + L
Sbjct: 261 RKSLNVAAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLK-----LP 315
Query: 172 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDPS ++ +F LL G + KV A ++ RDW+T GR+P+G+CGAAL ++A
Sbjct: 316 LVDPSHYISRFA-ALLEFGEETHKVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLAAR 374
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + S +IV++V I + TL KRL EF+ T SG+LT+ DF
Sbjct: 375 MNNFRRSVEEIVQVVKIADTTLKKRLDEFKKTPSGALTLADF 416
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 27/131 (20%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D +D+ E+D +L +EE K+ +W E+NREYLE AAK
Sbjct: 599 DELQGLDEEELDRFLLTDEEVRIKERVWVELNREYLEAIAAK------------------ 640
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 532
G Q QE + +KSRK K+ ++ TA E+ R ++ K + S +I
Sbjct: 641 --GEQ--QETGTSN----SKSRKRKKTNNKPRDASTPSGSTAAESVRNLIKKNPKYSKRI 692
Query: 533 NYDVLEKLFDD 543
NYD L+ LF D
Sbjct: 693 NYDALKDLFMD 703
>gi|45190394|ref|NP_984648.1| AEL213Wp [Ashbya gossypii ATCC 10895]
gi|44983290|gb|AAS52472.1| AEL213Wp [Ashbya gossypii ATCC 10895]
Length = 571
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 163/283 (57%), Gaps = 18/283 (6%)
Query: 1 MVWCSSCARH--VTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT 58
M C +C V ++ C CG V ED+ +E TF + ++G + + G+FV
Sbjct: 1 MAKCKNCGHTEIVVDLSNANNDRVCKACGVVSEDNPIVSEVTFGETSSGAAVVQGSFVAA 60
Query: 59 IQSE--YGA-------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
Q+ +G SRE + A ++ + +AL I E + A ++Y +A++ NF
Sbjct: 61 GQAHAAFGPHGTSALESREATLNNARRKLQAVSHALQIPEY--VREAAFQWYQLALSNNF 118
Query: 110 TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV 169
+GRR++ V A+CLY+ACR++ +LIDFS+ L ++VY +GA +L++ +VL+I
Sbjct: 119 VQGRRSQNVIAACLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKVLHIVK---- 174
Query: 170 LKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
L DPS+F+ F ++L G K KV A + +M +DW+ GR+P+G+ GA L ++
Sbjct: 175 LPLADPSLFIQHFAEKLDLGDKKIKVVKDAVKLAQTMSKDWMYEGRRPAGIAGACLLLAC 234
Query: 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ L+ + S++V + H+ E TL +RL EF+NT SG+L+I+ F
Sbjct: 235 RMNNLRRTHSEVVAVSHVAEETLQQRLNEFKNTKSGNLSIKQF 277
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 9/139 (6%)
Query: 407 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 462
++ SD +N D+DD E++ ++ +EE K+ IW +N EYL EQ +K EA A+
Sbjct: 436 SKVSDDPENLEDVDDEELEAHILDEEASKLKERIWIGINGEYLLEQESKRLKLEADLASG 495
Query: 463 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 522
+L+ + A+ L A AAA + Q AEA SG TA E+ + M
Sbjct: 496 NTSLKKKRSSKKRKTDASNLLPEALAAADPTGIQPALQ--VAEA--SGDLTTA-ESVKNM 550
Query: 523 LTKKRLSSKINYDVLEKLF 541
L K S KINYD ++ LF
Sbjct: 551 LQKTSFSKKINYDAIDGLF 569
>gi|380812142|gb|AFE77946.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
Length = 677
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 149/267 (55%), Gaps = 27/267 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVK 254
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFM 272
+CE+TL KRL EFE+T + LTI++FM
Sbjct: 255 VCESTLRKRLTEFEDTPTSQLTIDEFM 281
>gi|402877358|ref|XP_003902396.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Papio anubis]
Length = 677
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 149/267 (55%), Gaps = 27/267 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVK 254
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFM 272
+CE+TL KRL EFE+T + LTI++FM
Sbjct: 255 VCESTLRKRLTEFEDTPTSQLTIDEFM 281
>gi|383408305|gb|AFH27366.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
gi|384946668|gb|AFI36939.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
Length = 677
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 149/267 (55%), Gaps = 27/267 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVK 254
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFM 272
+CE+TL KRL EFE+T + LTI++FM
Sbjct: 255 VCESTLRKRLTEFEDTPTSQLTIDEFM 281
>gi|441666045|ref|XP_004091858.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit [Nomascus leucogenys]
Length = 699
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 149/267 (55%), Gaps = 27/267 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVK 254
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFM 272
+CE+TL KRL EFE+T + LTI++FM
Sbjct: 255 VCESTLRKRLTEFEDTPTSQLTIDEFM 281
>gi|323337428|gb|EGA78678.1| Brf1p [Saccharomyces cerevisiae Vin13]
Length = 584
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 162/274 (59%), Gaps = 16/274 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEE 253
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
TL +RL EF+NT + L+++ F R+ ++ +G A
Sbjct: 254 TLQQRLNEFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 407 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 455
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESK 501
>gi|6321685|ref|NP_011762.1| Brf1p [Saccharomyces cerevisiae S288c]
gi|135646|sp|P29056.1|TF3B_YEAST RecName: Full=Transcription factor IIIB 70 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1
gi|172897|gb|AAB04945.1| transcription factor III B component [Saccharomyces cerevisiae]
gi|172905|gb|AAA35148.1| transcription factor IIIB [Saccharomyces cerevisiae]
gi|258516|gb|AAB23865.1| RNA polymerase III transcription factor 4, PCF4, pol III
transcription initiation factor 4=TFIIB homolog
[Saccharomyces cerevisiae, Peptide, 596 aa]
gi|1323446|emb|CAA97275.1| BRF1 [Saccharomyces cerevisiae]
gi|1702956|emb|CAA68968.1| BRF1 [Saccharomyces cerevisiae]
gi|285812437|tpg|DAA08337.1| TPA: Brf1p [Saccharomyces cerevisiae S288c]
gi|392299501|gb|EIW10595.1| Brf1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 596
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 162/274 (59%), Gaps = 16/274 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEE 253
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
TL +RL EF+NT + L+++ F R+ ++ +G A
Sbjct: 254 TLQQRLNEFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 407 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 462
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 463 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 517
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 518 ATRRMLTKKRLSSKINYDVLEKLF 541
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|365765493|gb|EHN07001.1| Brf1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 596
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 162/274 (59%), Gaps = 16/274 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEE 253
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
TL +RL EF+NT + L+++ F R+ ++ +G A
Sbjct: 254 TLQQRLNEFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 401 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 455
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 456 EAAAAAAKAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSG 510
EA A +++ + + + AAAA + ++K AA A+ SG
Sbjct: 506 EADIATGNTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESG 565
Query: 511 PAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
TA ++ + ML K S KINYD ++ LF
Sbjct: 566 DFTTA-DSVKNMLQKASFSKKINYDAIDGLF 595
>gi|50302609|ref|XP_451240.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|52788254|sp|P46070.2|TF3B_KLULA RecName: Full=Transcription factor IIIB 70 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1
gi|49640371|emb|CAH02828.1| KLLA0A05434p [Kluyveromyces lactis]
Length = 556
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 160/274 (58%), Gaps = 17/274 (6%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR------TIQSEYG----ASRE 68
++L C CG V E+++ +E TF + + G + + G FV T S G SRE
Sbjct: 29 NELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFVSANQAHPTFMSHSGQNALMSRE 88
Query: 69 RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 128
+ A ++ + ALNI E + A ++Y +A++ NF +GR+++ V A+CLY+ACR
Sbjct: 89 TTLNNARRKLKAVSYALNIPEY--VTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACR 146
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
++ +LIDFS+ L ++VY +GA +L+L + L I L DPS+F+ F ++L
Sbjct: 147 KERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVK----LPLADPSLFIQHFAEKLEL 202
Query: 189 GGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G K KV A + +M RDW+ GR+P+G+ GA L ++ + L+ + S+IV I H+
Sbjct: 203 GDKKIKVIRDAVKLAQTMSRDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAISHVA 262
Query: 248 EATLMKRLIEFENTDSGSLTIEDFMARKKELHEG 281
E TL +RL EF+NT S L++++F + E++EG
Sbjct: 263 EETLQQRLNEFKNTTSAKLSVKEFRDDETEVNEG 296
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 407 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 466
++ SD +N D+DD E+D +L +EE K+ IW ++N +YL EQ +K A A+
Sbjct: 423 SKVSDHPENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESKRLKQEADLASG 482
Query: 467 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 526
S + ++ + ++A++ K + + + A + +L K
Sbjct: 483 NTSLRKK----RSKRTNRNQSSASIVKVQVDGLPLDVSVDDADAVDVVAAGGVKNLLQKT 538
Query: 527 RLSSKINYDVLEKLF 541
S KINYD + LF
Sbjct: 539 TFSKKINYDAINGLF 553
>gi|115530760|emb|CAL49303.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus (Silurana) tropicalis]
Length = 461
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 149/262 (56%), Gaps = 17/262 (6%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS----------RERLME 72
C CG VLED+ +E FV+ A G S G FV + S S +E +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVEGAGGISSAVGQFVSSECSGKTPSLGEGFYTSVGKESRAQ 84
Query: 73 KAFDDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ RQ+ N + + + + A F+ +AV+++ T+GR+ V A+CLYL CR +
Sbjct: 85 TLQNGKRQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEG 144
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG- 190
P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 145 TPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGDK 199
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 250
N +V TA ++ MKRDW+ TGR+PSGLCGAAL V++ H + + +++++V +CE+T
Sbjct: 200 NHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVASRMHDFRRTIKEVIRVVKVCEST 259
Query: 251 LMKRLIEFENTDSGSLTIEDFM 272
L KRL EFE+T + LTI++FM
Sbjct: 260 LRKRLTEFEDTPTSQLTIDEFM 281
>gi|207344925|gb|EDZ71907.1| YGR246Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 596
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 162/274 (59%), Gaps = 16/274 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEE 253
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
TL +RL EF+NT + L+++ F R+ ++ +G A
Sbjct: 254 TLQQRLNEFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 401 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 455
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 456 EAAAAAAKAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSG 510
EA A +++ + + + AAAA + ++K AA A+ SG
Sbjct: 506 EADIATGNTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESG 565
Query: 511 PAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
TA ++ + ML K S KINYD ++ LF
Sbjct: 566 DFTTA-DSVKNMLQKASFSKKINYDAIDGLF 595
>gi|190406748|gb|EDV10015.1| RNA polymerase III transcription factor [Saccharomyces cerevisiae
RM11-1a]
Length = 596
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 162/274 (59%), Gaps = 16/274 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEE 253
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
TL +RL EF+NT + L+++ F R+ ++ +G A
Sbjct: 254 TLQQRLNEFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 401 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 455
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 456 EAAAAAAKAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSG 510
EA A +++ + + + AAAA + ++K AA A+ SG
Sbjct: 506 EADIATGNTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESG 565
Query: 511 PAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
TA ++ + ML K S KINYD ++ LF
Sbjct: 566 DFTTA-DSVKNMLQKASFSKKINYDAIDGLF 595
>gi|323348488|gb|EGA82733.1| Brf1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 596
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 162/274 (59%), Gaps = 16/274 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEE 253
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
TL +RL EF+NT + L+++ F R+ ++ +G A
Sbjct: 254 TLQQRLNEFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 407 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 462
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 463 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 517
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 518 ATRRMLTKKRLSSKINYDVLEKLF 541
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|194900456|ref|XP_001979773.1| GG16780 [Drosophila erecta]
gi|190651476|gb|EDV48731.1| GG16780 [Drosophila erecta]
Length = 668
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 163/570 (28%), Positives = 260/570 (45%), Gaps = 110/570 (19%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA---------------S 66
C CG VLED +E F + G + + G FV + +S GA S
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFV-SAESSGGATNYGYGKFQVGSGTES 82
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE ++KA D+ + L S A F+ +A++R+ T+GR++ + A+C+Y+
Sbjct: 83 REVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALSRHLTRGRKSTHIYAACVYMT 140
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 141 CRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSVDPCLYIMRFANRL 195
Query: 187 LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D++ +V
Sbjct: 196 QLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVK 255
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFM---------------ARKK-------------- 276
I E+TL KRL EF T SG LT+E+FM ARKK
Sbjct: 256 IHESTLRKRLSEFAETPSGGLTLEEFMTVDLEREQDPPSFKAARKKDRERIKDMGEHELT 315
Query: 277 ELHEGVAANLPNNGPKVSG-MNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADP 335
EL + + A+L + K S + L K K + G +S E+ + + E +
Sbjct: 316 ELQKEIDAHLEKDLGKYSNSVYRQLTKGKGCTPLSSPGTPKSTSEKDIEMEESRQ----- 370
Query: 336 PAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEG 395
F ++K +N ++ ++ ++ ++ P+ E + C T S+ +
Sbjct: 371 --FIEQSNAEVIKELIAKNEDVKKAEPGGLVAGIEGLR-PDIEAI---CRV-TQSDLEDV 423
Query: 396 DHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 455
+ K P E +D+ +D E+D Y+ E+E K +W+ +N EYL+EQ +
Sbjct: 424 EKAKQP-----QEQELITDDLND---DELDQYVLTEDEALAKFEMWKNLNAEYLQEQKER 475
Query: 456 EAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPA 512
E +AK R+E + +R GP+
Sbjct: 476 E--------------------------------ERLAKEREEGKPERKKRKPRKKVIGPS 503
Query: 513 QTALEATRRMLTKKRLSSKINYDVLEKLFD 542
TA EA +ML +K++SSKINY++L+ L D
Sbjct: 504 STAGEAIEKMLQEKKISSKINYEILKTLTD 533
>gi|151943520|gb|EDN61831.1| transcription factor TFIIIB subunit [Saccharomyces cerevisiae
YJM789]
gi|256272646|gb|EEU07623.1| Brf1p [Saccharomyces cerevisiae JAY291]
gi|259146747|emb|CAY80004.1| Brf1p [Saccharomyces cerevisiae EC1118]
gi|323354892|gb|EGA86725.1| Brf1p [Saccharomyces cerevisiae VL3]
Length = 596
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 162/274 (59%), Gaps = 16/274 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEE 253
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
TL +RL EF+NT + L+++ F R+ ++ +G A
Sbjct: 254 TLQQRLNEFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 401 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 455
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 456 EAAAAAAKAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSG 510
EA A +++ + + + AAAA + ++K AA A+ SG
Sbjct: 506 EADIATGNTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESG 565
Query: 511 PAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
TA ++ + ML K S KINYD ++ LF
Sbjct: 566 DFTTA-DSVKNMLQKASFSKKINYDAIDGLF 595
>gi|50287787|ref|XP_446323.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525630|emb|CAG59247.1| unnamed protein product [Candida glabrata]
Length = 598
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 161/282 (57%), Gaps = 17/282 (6%)
Query: 1 MVWCSSCARH--VTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT 58
++ C +C V ++ L C CG V E++ +E TF + ++G + ++G+F+
Sbjct: 2 VLRCKNCGNTELVVDSSTPNNDLVCVACGVVSEENPIVSEVTFAETSSGAATVTGSFLSA 61
Query: 59 IQSEYGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
QS SRE + A +R + +ALNI D IV + ++Y +A+A NF
Sbjct: 62 GQSHTSGGLGSNAMESREATLNNAKKKLRAVGHALNI--PDYIVEASHQWYKLALAYNFV 119
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
+GRR++ V A+CLY+ACR++ +LIDFS+ L ++VY +GA +L++ + L I L
Sbjct: 120 QGRRSQNVIAACLYIACRKEMTHHMLIDFSSRLQVSVYSIGATFLKMVKRLQITK----L 175
Query: 171 KQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
DPS+F+ F ++L G K KV A + M DW+ GR+P+G+ GA + ++
Sbjct: 176 PLADPSLFIQHFAEKLELGEKKIKVVRDAVKLAQRMSNDWMFEGRRPAGIAGACILLACR 235
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ L+ + S+IV + H+ E TL +RL EF+ T + SL++++F
Sbjct: 236 MNNLRRTHSEIVAVSHVAEETLQQRLNEFKGTKAASLSVKEF 277
>gi|340372189|ref|XP_003384627.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Amphimedon queenslandica]
Length = 649
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 142/252 (56%), Gaps = 22/252 (8%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQM 81
C CG VLE+ +E TF + ++G L G FV T S+ RL +
Sbjct: 28 VCVGCGVVLEEDIIVSELTFQEQSSGSLALVGQFVST------ESKRRLT--------HL 73
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ L + + + +A F+ +A+ N T+GR++ + +CLYL CR + P +L+DFS+
Sbjct: 74 GSQLKLNQ--HCIDMAFGFFKMALQLNLTRGRKSSIMDTACLYLVCRSEGTPHMLLDFSD 131
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARD 200
L INVY LG YL+L L+I + +DP +++H+F +L G V TA
Sbjct: 132 VLQINVYSLGRAYLRLSTALHINPPA-----LDPCLYIHRFAHKLELGDKVHDVSMTALR 186
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260
++A MKRDWI GR+P+GLCGAAL V+A H S I KIV + EAT+ KRL +F+N
Sbjct: 187 LVARMKRDWIHHGRRPAGLCGAALLVAARLHNFNRSVKQISKIVKLSEATIRKRLDDFQN 246
Query: 261 TDSGSLTIEDFM 272
T S LTIE+F+
Sbjct: 247 TPSSCLTIEEFL 258
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 415 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 474
+ IDD E++ L +EEE K +W N ++L+E + +K SY N
Sbjct: 385 DLEGIDDEEIEQMLLSEEEVKIKSQLWFAENGDFLKEMEGPQLLNYFSK-----SYMN-- 437
Query: 475 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 534
+ + LAA A K + + + PA TA EA RML +K+LSSKINY
Sbjct: 438 PTIARKERLAAVEAKKEGNKGKRTVHRPKKDRTHQSPAATAGEAIERMLVEKKLSSKINY 497
Query: 535 DVLEKL 540
DVL L
Sbjct: 498 DVLRDL 503
>gi|323308921|gb|EGA62153.1| Brf1p [Saccharomyces cerevisiae FostersO]
Length = 523
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 162/274 (59%), Gaps = 16/274 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEE 253
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
TL +RL EF+NT + L+++ F R+ ++ +G A
Sbjct: 254 TLQQRLNEFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 401 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 455
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 456 EAAAAAAKAALE 467
EA A ++E
Sbjct: 506 EADIATGNTSVE 517
>gi|349578449|dbj|GAA23615.1| K7_Brf1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 596
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 162/274 (59%), Gaps = 16/274 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEE 253
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
TL +RL EF+NT + L+++ F R+ ++ +G A
Sbjct: 254 TLQQRLNEFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 401 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 455
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 456 EAAAAAAKAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSG 510
EA A +++ + + + AAAA + ++K AA A+ SG
Sbjct: 506 EADIATGNTSVKKKRTRRRNNTRNDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESG 565
Query: 511 PAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
TA ++ + ML K S KINYD ++ LF
Sbjct: 566 DFTTA-DSVKNMLQKASFSKKINYDAIDGLF 595
>gi|323304747|gb|EGA58507.1| Brf1p [Saccharomyces cerevisiae FostersB]
Length = 523
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 162/274 (59%), Gaps = 16/274 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEE 253
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
TL +RL EF+NT + L+++ F R+ ++ +G A
Sbjct: 254 TLQQRLNEFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 401 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 459
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 460 AAAKAALEASYK 471
A A S K
Sbjct: 506 EADIATGNTSVK 517
>gi|389742730|gb|EIM83916.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 687
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 157/285 (55%), Gaps = 22/285 (7%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT-- 58
M C+ C V + C +CG V+E++ E +F + + G + + G FV
Sbjct: 1 MPVCTDCGGTVIEYDAAAGNGFCVQCGTVIEENTIVNEVSFGETSTGAAMVQGAFVGQGA 60
Query: 59 ----IQSEYG-----ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
+ +G SRE+ + A + Q+ + L++ E+ + A R Y +AV F
Sbjct: 61 THARMGGPFGNRGNSESREQTIANANRRISQIASNLHLSET--VSMSASRLYSLAVEHKF 118
Query: 110 TKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
TKGR+ V A CLY+ACRQK ++ +LIDFS+ L +NV+ELG YLQL Q L +
Sbjct: 119 TKGRKAMNVVAVCLYVACRQKGTRSLMLIDFSDLLQVNVFELGHTYLQLVQTLNLR---- 174
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L VDPS ++ +F LL G++ +V A ++ RDW+T GR+P+G+CGA L +
Sbjct: 175 -LPLVDPSHYISRFA-ALLEFGDETSRVATDAVRLVQRFDRDWMTKGRRPAGICGACLLL 232
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+A + + S +IV++V I + TL KRL EF+ T S +LTI DF
Sbjct: 233 AARMNNFRRSIEEIVQVVKIADTTLKKRLDEFKRTRSANLTIGDF 277
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 27/128 (21%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D +D+ E+D +L +EE K+ +W EMN+EYLE A K
Sbjct: 521 DELLGLDEDELDKFLLTDEEVKIKERVWVEMNKEYLEAIALK------------------ 562
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 533
A++ + + K RK + R A + TA E+ R +L + + S +IN
Sbjct: 563 ------AEQRDNGSTSKPRKKRKTNSKPRDASTPH---GNTAAESVRSLLKQPKYSKRIN 613
Query: 534 YDVLEKLF 541
Y+ L+ LF
Sbjct: 614 YNALKDLF 621
>gi|385304224|gb|EIF48251.1| brf1p [Dekkera bruxellensis AWRI1499]
Length = 420
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 165/278 (59%), Gaps = 20/278 (7%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------SRERL 70
S L C +CG VLE++ +E TF + + G + + G+FV + Q+ +G SRE+
Sbjct: 28 SDLACTKCGTVLEENPIVSEVTFAETSNGGAMIQGSFVGSDQAHANFGNNRGSLDSREQT 87
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ ++ + +AL I D I A +++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 88 LANGRKRIKNVASALGI--QDYISDAAYQWFQLALTNNFVQGRRSQNVVAACLYIACRKE 145
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 190
+LIDFS+ L ++V+ +GA +L++ + L+I D L +DPS+F+ F D+L G
Sbjct: 146 KTHHMLIDFSSRLQVSVFAVGATFLKMVKALHITD----LPLIDPSLFIQHFADKLDFGR 201
Query: 191 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
K KV + A + M +W+ GR+PSG+ GA + ++A + + S+IV + H+ +
Sbjct: 202 AKLKVINDALKLARRMDDNWLYEGRRPSGIAGACILLAARMNNFHRTHSEIVAVSHVGXS 261
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 287
T+ KRL EF+ T S +L+IE F RK +E V A+LP
Sbjct: 262 TIQKRLWEFQKTYSSNLSIEKF--RK---NEKVRASLP 294
>gi|402221210|gb|EJU01279.1| hypothetical protein DACRYDRAFT_107836 [Dacryopinax sp. DJM-731
SS1]
Length = 738
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 153/264 (57%), Gaps = 24/264 (9%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERL------------ 70
C CG V E++ E TF + + G + + G+ V GA+R ++
Sbjct: 39 CLTCGCVTEENTIVAEVTFGETSGGAAIVQGSHVAA-----GATRAKINAPWGRQGNFES 93
Query: 71 MEKAFDDMRQMKNAL--NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 128
ME+A RQ+ L ++G ++ ++ A+R++ +A FTKGRR+ V +C Y+A R
Sbjct: 94 MEQAKHKARQILQGLKRHLGITETVIGYAERWWILAYEMGFTKGRRSLLVIGACCYIAVR 153
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
Q +P +LID S+ L NV++LG VYLQL Q+L + + L VDP ++ +F+ L
Sbjct: 154 QHQRPIMLIDLSDLLQANVFDLGNVYLQLVQLLPVKN----LDLVDPEFYIERFSKLLEF 209
Query: 189 GGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G ++ K+ D A I+ KRDW+ TGR+PSG+CGAAL ++A + + S +IV++V I
Sbjct: 210 GEDREKIRDDAVRIVHRFKRDWLYTGRRPSGICGAALLLAARMNNYRRSVLEIVQVVKIA 269
Query: 248 EATLMKRLIEFENTDSGSLTIEDF 271
+ TL KRL+EF T S S ++++F
Sbjct: 270 DTTLKKRLVEFGKTPSASFSLDEF 293
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 26/141 (18%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
DG + D+D+ E+D Y+ + E K+ +W E+NR+YLE+ AA+EA A +
Sbjct: 541 DGEEEI-DLDEAELDDYILTDAEVEAKERVWVELNRQYLEKCAAREAVAQGEEEPAPKKR 599
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL---EATRRMLTKKR 527
K+ S K + ++ + + PA++A+ T R + +
Sbjct: 600 KH---------------------SNKRTGPRDSSNPRGATPAESAMALITGTYRKKGEPQ 638
Query: 528 LSSK-INYDVLEKLFDDSVCL 547
+ SK INYD LE+LF+ + L
Sbjct: 639 VRSKRINYDALEQLFNRPLKL 659
>gi|367004042|ref|XP_003686754.1| hypothetical protein TPHA_0H01120 [Tetrapisispora phaffii CBS 4417]
gi|357525056|emb|CCE64320.1| hypothetical protein TPHA_0H01120 [Tetrapisispora phaffii CBS 4417]
Length = 602
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 158/265 (59%), Gaps = 17/265 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ-----SEYGAS-----R 67
++ L C CG V E++ +E TF + +AG + + G+F+ Q + +G S R
Sbjct: 21 NNDLVCVGCGTVSEENPIVSEVTFGETSAGAAVVQGSFISGDQAHAAFTSHGGSSAMESR 80
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E + A +R + +AL I D I A ++Y +A+ NF +GRR++ V A+CLY+AC
Sbjct: 81 EATLNNARRKLRAVSHALRI--QDYITDAAFQWYKLALHHNFVQGRRSQNVIAACLYVAC 138
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ +LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L
Sbjct: 139 RKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKRLHITN----LPLADPSLFIQHFAEKLD 194
Query: 188 PGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G K KV A + M +DW+ GR+P+G+ GA + ++ + L+ + S+IV I H+
Sbjct: 195 LGEKKIKVIKDAVKLAQRMSKDWMYEGRRPAGIAGACILLACRMNNLRRTHSEIVAISHV 254
Query: 247 CEATLMKRLIEFENTDSGSLTIEDF 271
E TL +RL EF+NT++G L+I++F
Sbjct: 255 AEETLQQRLNEFKNTNTGKLSIKEF 279
>gi|301787049|ref|XP_002928941.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Ailuropoda melanoleuca]
Length = 863
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 146/258 (56%), Gaps = 21/258 (8%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRERLMEKAF 75
VLED+ +E FV+N+ G S G FV T+ + SR + ++
Sbjct: 217 VLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQTLQNGR 276
Query: 76 DDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 135
+ + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +
Sbjct: 277 RQIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHM 334
Query: 136 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKV 194
L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 335 LLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGDKNHEV 389
Query: 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KR
Sbjct: 390 SMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKR 449
Query: 255 LIEFENTDSGSLTIEDFM 272
L EFE+T + LT+++FM
Sbjct: 450 LTEFEDTPTSQLTVDEFM 467
>gi|68072423|ref|XP_678125.1| transcription factor IIIb subunit [Plasmodium berghei strain ANKA]
gi|56498490|emb|CAH96336.1| transcription factor IIIb subunit, putative [Plasmodium berghei]
Length = 728
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 155/276 (56%), Gaps = 16/276 (5%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
C +C ++ C RCG VLE++ FV+N G + G F+ ++
Sbjct: 3 CKNCQSSDIETNEGQGEIICLRCGSVLEENKIVESLEFVENNNGAISMVGQFIPSSGTKS 62
Query: 59 IQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
+G SRE ++K + +++++ + L++ S + + A+R Y +A+ RNFT GR
Sbjct: 63 FMLSWGIRESREISLQKGYINIQKIADNLHL--STQHIEAAQRIYLMALQRNFTMGRNNS 120
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V ASCLY CR++ P +LIDFS+ L LG +L+L ++L+I+ + +DPS
Sbjct: 121 YVAASCLYTICRREKSPIMLIDFSDILQT-PKPLGKTFLKLLRLLHIS-----VPNIDPS 174
Query: 177 IFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
+FL +F +L L KV T ++ +M RDWI+TGR+P+GLCGA+L ++ HG+
Sbjct: 175 LFLERFAYKLNLKNDIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGASLLIATRIHGINI 234
Query: 236 SKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + I ++V I T++KRL EF+NT+ + +F
Sbjct: 235 NSNTIAEVVRISNPTIIKRLYEFKNTNIAKIKASEF 270
>gi|323333395|gb|EGA74791.1| Brf1p [Saccharomyces cerevisiae AWRI796]
Length = 404
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 162/274 (59%), Gaps = 16/274 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGAS-----RERL 70
++ L C CG V ED+ +E TF + +AG + + G+F+ QS +G S RE
Sbjct: 20 NNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREAT 79
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ A +R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 80 LNNARRKLRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKE 137
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L
Sbjct: 138 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLAD 193
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E
Sbjct: 194 KKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEE 253
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVA 283
TL +RL EF+NT + L+++ F R+ ++ +G A
Sbjct: 254 TLQQRLNEFKNTKAAKLSVQKF--RENDVEDGEA 285
>gi|393214015|gb|EJC99509.1| hypothetical protein FOMMEDRAFT_160578 [Fomitiporia mediterranea
MF3/22]
Length = 724
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 161/283 (56%), Gaps = 24/283 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----- 58
C C + + C CG V+E++ +E F ++++G + + G+FV
Sbjct: 34 CGDCGGTIIEYDAAAGNGFCVGCGTVVEENAIVSEVVFGESSSGAAIVQGSFVGQGATHA 93
Query: 59 -IQSEYGA-----SRERLMEKAFDDMRQMKNALNIGESDEIVHVAK-RFYGIAVARNFTK 111
+ YG SRE+ ++ A R+++N + E+V A R Y +A+ FTK
Sbjct: 94 RMGGPYGKRNTSESREQTIDNA---SRKIRNVGALMRLSEVVQTAAIRMYTLALEHKFTK 150
Query: 112 GRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
GR+ V A CLY+ACRQK ++ ++LIDFS+ L +NV++LG +LQL Q L + L
Sbjct: 151 GRKNMNVIAVCLYIACRQKETRNYMLIDFSDLLQVNVFDLGHTFLQLVQTLNLR-----L 205
Query: 171 KQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
VDPS ++ +F LL G++ KV A ++A RDW++ GR+P+G+CGA L ++A
Sbjct: 206 PLVDPSHYIARFA-ALLEFGDETPKVAADAVRLVARFDRDWMSRGRRPAGICGACLLLAA 264
Query: 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ + S ++V++V I + TL KRL EF+NT SG+LT+ DF
Sbjct: 265 RMNNFRRSVQEVVQVVKIADTTLKKRLDEFKNTPSGALTLADF 307
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 30/117 (25%)
Query: 427 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 486
+L +EEE K+ +W EMN++YLE AAKEA E +
Sbjct: 511 FLLSEEEVKIKERVWVEMNKDYLEALAAKEA------------------------EKVGS 546
Query: 487 AAAAVAKSRKEKQQKRAAEAKNSGPAQ-TALEATRRMLTKK-RLSSKINYDVLEKLF 541
A K RK + R +S PA TA++A R M+ K + S +INY+ LE LF
Sbjct: 547 APTKTRKKRKTDNKPR----DSSTPAGLTAVDAVRSMIKKSAKYSRRINYEALENLF 599
>gi|388583139|gb|EIM23442.1| BRF1-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 806
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 149/272 (54%), Gaps = 13/272 (4%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C C H C CG V E+ N + F ++++GQ+ ++G V
Sbjct: 6 CRDCGSLNIDHDSSSGSSYCANCGIVFEESNIVADVGFTESSSGQAHVTGTLV--AHDAT 63
Query: 64 GASRE---RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
G SRE + +++ +RQ+ AL I E+ + +R Y +AV NF +GR+ + +
Sbjct: 64 GTSRESRDKTIQEGKRRVRQLAAALRISEA--VAESGERIYTLAVQNNFIRGRKAVYIVS 121
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
+CLY ACR + +LIDFS++L INV+ LG YL+L + L + L ++DPSI++
Sbjct: 122 ACLYAACRLQKDSHMLIDFSDFLQINVFALGTTYLRLVERLDLK-----LPEMDPSIYIQ 176
Query: 181 KFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F L G ++V A + D+I+ GR+P+G+CGAAL ++A + + S +
Sbjct: 177 RFASLLEFGQETQRVASDATRLCRRFDEDFISHGRRPAGICGAALLLAARMNNFRRSVEE 236
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
IV++V I + T+ KRL EF + +G LTIEDF
Sbjct: 237 IVQVVKIADVTVQKRLDEFSRSTAGDLTIEDF 268
Score = 38.9 bits (89), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 32/128 (25%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D +D+ E+D + E+E K+ IW E N++YLE+ A +A
Sbjct: 658 DELQGLDESELDDMILGEDEVRVKERIWMEFNKDYLEKIALHQATG-------------- 703
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 533
Q Q+ S + A EA ++L ++++S KIN
Sbjct: 704 ----QDQQKKPRRKKRKAKDQ--------------SAKPENAAEAASQVLKQRKISKKIN 745
Query: 534 YDVLEKLF 541
Y+ L+ LF
Sbjct: 746 YNALDGLF 753
>gi|619493|emb|CAA87399.1| TFIIB related subunit of TFIIIB (BRF1) [Kluyveromyces lactis]
Length = 556
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 159/274 (58%), Gaps = 17/274 (6%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR------TIQSEYG----ASRE 68
++L C CG V E+++ +E F + + G + + G FV T S G SRE
Sbjct: 29 NELICKVCGLVTEENSIVSELAFGEASNGAAVIQGAFVSANQAHPTFMSHSGQNALMSRE 88
Query: 69 RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 128
+ A ++ + ALNI E + A ++Y +A++ NF +GR+++ V A+CLY+ACR
Sbjct: 89 TTLNNARRKLKAVSYALNIPEY--VTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACR 146
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
++ +LIDFS+ L ++VY +GA +L+L + L I L DPS+F+ F ++L
Sbjct: 147 KERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVK----LPLADPSLFIQHFAEKLEL 202
Query: 189 GGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G K KV A + +M RDW+ GR+P+G+ GA L ++ + L+ + S+IV I H+
Sbjct: 203 GDKKIKVIRDAVKLAQTMSRDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAISHVA 262
Query: 248 EATLMKRLIEFENTDSGSLTIEDFMARKKELHEG 281
E TL +RL EF+NT S L++++F + E++EG
Sbjct: 263 EETLQQRLNEFKNTTSAKLSVKEFRDDETEVNEG 296
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 407 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 466
++ SD +N D+DD E+D +L +EE K+ IW ++N +YL EQ +K A A+
Sbjct: 423 SKVSDHPENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESKRLKQEADLASG 482
Query: 467 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 526
S + ++ + ++A++ K + + + A + +L K
Sbjct: 483 NTSLRKK----RSKRTNRNQSSASIVKVQVDGLPLDVSVDDADAVDVVAAGGVKNLLQKT 538
Query: 527 RLSSKINYDVLEKLF 541
S KINYD + LF
Sbjct: 539 TFSKKINYDAINGLF 553
>gi|354546095|emb|CCE42824.1| hypothetical protein CPAR2_204670 [Candida parapsilosis]
Length = 552
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 150/585 (25%), Positives = 258/585 (44%), Gaps = 94/585 (16%)
Query: 4 CSSCARHVTGHRPYD-------SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV 56
C +C GH +D + C RCG VLE++ +E F ++++G + + G V
Sbjct: 11 CVNC-----GHTQFDVNRYTAAGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMV 65
Query: 57 RTIQSEYG---------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
Q+ SRE+ + +R++ AL I D I A ++ +A+
Sbjct: 66 GADQARATFAGGRQNAMESREQTITNGKRKIRRIAAALRI--PDFIAEAAGEWFKLALTM 123
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
NF +GRR+ V A+CLY+ACR++ P +LIDFS+ L I+VY LGA +L++ + L+I
Sbjct: 124 NFVQGRRSNNVLATCLYVACRKEKTPHMLIDFSSRLQISVYSLGATFLKMVKALHITS-- 181
Query: 168 NVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DPS+F+ F ++L KV A + M DWI GR+P+G+ GA + +
Sbjct: 182 --LPLADPSLFIQHFVEKLDFKEKATKVARDATKLAQRMSADWIHEGRRPAGVAGACVLL 239
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM-------------- 272
+A + + S S+IV I H+ + TL +RL EF+ T + L+++ F
Sbjct: 240 AARMNNFRRSHSEIVAISHVGQETLQRRLNEFKKTKAAQLSVKSFRDDEEVESANPPSFE 299
Query: 273 -ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 331
RK EL +A L + N++ +D + L + ++ + ++ +
Sbjct: 300 KNRKNELR--IARTLQRRQQET--FNDLESMTEDEKIQYLGDLSKDEQQKQILMNTIMSD 355
Query: 332 GADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERV-----PKNCTT 386
+ ER++K ++ N + +P +K++ + +R+ P+N
Sbjct: 356 ITINKELINEQIERILK--SKRNKLEQSLYKTPHELAKEKIEEDDLDRIWNMNWPRNLVK 413
Query: 387 QTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNR 446
+ E D S ++ SD DD V+ EE K+ IW +N
Sbjct: 414 NLPTTE-----------DVLKLVSSETELNSDDDDAVVEESQMTPEEVAMKERIWTGLNH 462
Query: 447 EYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ------- 499
+Y+ EQ K Q A EL +A +R+++Q
Sbjct: 463 DYMVEQERKRLK-------------------QEADELTGNTSATSGANRRKRQRSSVPPE 503
Query: 500 -QKRAAEA--KNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
QK + G ++A ++ + +K +S KINY+ L+ LF
Sbjct: 504 IQKEIGDIILDEDGAPKSAGDSAKMYFSKTSVSRKINYESLQGLF 548
>gi|429240773|ref|NP_596265.2| transcription factor TFIIIB complex subunit Brf1
[Schizosaccharomyces pombe 972h-]
gi|395398538|sp|Q9P6R0.2|TF3B_SCHPO RecName: Full=Transcription factor IIIB 60 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1; AltName: Full=TFIIB-related factor
gi|347834355|emb|CAB89885.2| transcription factor TFIIIB complex subunit Brf1
[Schizosaccharomyces pombe]
Length = 492
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 148/554 (26%), Positives = 254/554 (45%), Gaps = 119/554 (21%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEY---GASRERLME 72
C +CG V+E +E TF + + G + + G+ V RT Y G+ R +
Sbjct: 22 CTQCGVVVEQDAIVSEVTFGEASTGAAVVQGSLVSNDQTHARTFGGPYRNQGSVESRELT 81
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
A R A+ + ++ + A R++ +A+ NF KGRR++ V ASCLY+ CR
Sbjct: 82 IANGRRRISALAIALKLNERHIEAAVRYFTLAINNNFIKGRRSQYVVASCLYIVCRISKT 141
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N 191
+LIDFS+ L INV++LG+ +L+LC+VL L +DPS+++ +F L G
Sbjct: 142 SHMLIDFSDILQINVFKLGSTFLKLCRVLRPN-----LPLLDPSLYISRFASLLEFGPET 196
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
+V + A ++A M RDW+ GR+P+G+CGA L ++A + + S ++V +V + + T+
Sbjct: 197 HRVANDAIRLVARMNRDWMQIGRRPAGICGACLLIAARMNNFRRSVREVVHVVKVADITI 256
Query: 252 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 311
KRL EF+ T+SG L+I DF
Sbjct: 257 QKRLDEFKLTESGDLSIADF---------------------------------------- 276
Query: 312 CGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPF------ 365
R+ + E G +DPP+F ++ + A N +E SP
Sbjct: 277 ----RNIWLE---------GQSDPPSFTKNQKFQQYGAQKVSNIDHTQEYMSPIKRTPDF 323
Query: 366 ---------MSRVDKVQSPEP-------ERVPKNCTTQTASNEGEGDHTKTPGVDATTEA 409
+S+ KV+S E ER + T+T +GD + + +
Sbjct: 324 DGNEVKSEELSQTVKVESQETPVHLKADEREIRKEVTETL----KGDELRKISLQVNVKF 379
Query: 410 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 469
S+ D+DD E++ L +++E K +W E+N++YL E+ AK
Sbjct: 380 SEEEVTLEDVDDDEIEDILLDKDEILTKTQVWMELNKDYLAEEEAK-------------- 425
Query: 470 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 529
L+ ++L + + +++++ R ++ + G A TA E+ + M+ ++ S
Sbjct: 426 ------NLKLQEDL----KKGIVRQPRKRRRYRPRDSTSDGIADTAAESAKEMMQQRAFS 475
Query: 530 SKINYDVLEKLFDD 543
KINY+ L+ LFD+
Sbjct: 476 KKINYEALDMLFDE 489
>gi|410898858|ref|XP_003962914.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Takifugu
rubripes]
Length = 591
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 139/251 (55%), Gaps = 22/251 (8%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG VLED+ +E FV+ G S G FV +A +++ +
Sbjct: 25 CMGCGSVLEDNVIVSEVEFVETGGGGSHAVGRFVSA--------------EAKNNINTL- 69
Query: 83 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
L + + + A FY +A+A++ T+G R V A+C+Y+ CR + P +L+D S+
Sbjct: 70 -GLQLQMNRHCLDTAFNFYKMALAKHLTRGHRCAHVAAACIYMVCRTEGTPHMLLDLSDV 128
Query: 143 LNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDI 201
L +NVY LG +L L + L I + +DP +++ +F L G N +V TA +
Sbjct: 129 LQVNVYVLGRTFLTLSRELCINAPA-----IDPCLYIPRFAQLLEFGEKNHEVSMTAMRL 183
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261
+ MKRDW+ TGR+PSGLCGAAL V+A H + + +IV +V +CE TL KRL EF +T
Sbjct: 184 VQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTTKEIVSVVKVCEQTLKKRLTEFGDT 243
Query: 262 DSGSLTIEDFM 272
+ LTIE+FM
Sbjct: 244 PTSQLTIEEFM 254
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 499 QQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
QQ+ +A + A +A EA +ML +KR+SSKINYDVL+ L
Sbjct: 425 QQRGSARKRAPIRANSADEAIGKMLEQKRISSKINYDVLKDL 466
>gi|150863862|ref|XP_001382483.2| Transcription factor IIIB 70 kDa subunit (TFIIIB) (B-related
factor) (BRF) [Scheffersomyces stipitis CBS 6054]
gi|149385118|gb|ABN64454.2| Transcription factor IIIB 70 kDa subunit (TFIIIB) (B-related
factor) (BRF) [Scheffersomyces stipitis CBS 6054]
Length = 570
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 149/260 (57%), Gaps = 15/260 (5%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------SRERLME 72
+ C RCG V+E++ +E F ++++G + + G V Q+ YG SRE+ +
Sbjct: 27 ISCLRCGTVMEENPIVSEVQFGESSSGAAMVQGAMVGADQARASYGGRQNAMESREQTLS 86
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+R++ +AL I +D I A ++ +A+ +NF +GRR++ V A+CLY+ACR++
Sbjct: 87 NGKRKIRKIAHALKI--ADYIAESAGGWFKLALTQNFVQGRRSQNVLAACLYVACRKERT 144
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGN 191
+LIDFS+ L I+VY LGA +L+L + L I L DPSIF+ F ++L
Sbjct: 145 HHMLIDFSSRLQISVYSLGATFLKLVKALNIVK----LPLADPSIFIQHFAEKLDFKEKA 200
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
KV A + M DWI GR+P+G+ GA + ++A + + + S+IV + H+ E TL
Sbjct: 201 TKVVKDAVKLAHQMSSDWIDAGRRPAGIAGACVLLAARMNNFRRTHSEIVAVAHVAEETL 260
Query: 252 MKRLIEFENTDSGSLTIEDF 271
KRL EF+ T SG LT+ F
Sbjct: 261 QKRLNEFKKTASGVLTVSQF 280
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 15/146 (10%)
Query: 404 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAA 459
D + S ++ SD DD V EE K+ IW +N +++ Q K EA
Sbjct: 436 DILAKVSSSTELNSDDDDEVVLESELTPEEASIKERIWTGLNHDFMVAQERKRLKQEADE 495
Query: 460 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 519
+ K + QE A +V + +G A TA E+
Sbjct: 496 LTGNTSGTTRKKRARTAPEVVQEYGVKDALSVI-----------GVDERTGEALTAAESA 544
Query: 520 RRMLTKKRLSSKINYDVLEKLFDDSV 545
+ ML+KK S KINYD ++ LF +S+
Sbjct: 545 KIMLSKKSFSKKINYDRIDDLFSNSM 570
>gi|389585362|dbj|GAB68093.1| transcription factor IIIb subunit [Plasmodium cynomolgi strain B]
Length = 820
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 176/341 (51%), Gaps = 22/341 (6%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----- 56
+ C +C ++ C RCG VLE++ FV+N G + G FV
Sbjct: 6 IVCKNCYSTDVETNEGQGEVICLRCGSVLEENKIVESLEFVENNNGAISMVGQFVPASGN 65
Query: 57 RTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
++ +G SRE ++K + +++++ + L++ S + V A+R Y +A+ RNFT GR
Sbjct: 66 KSFILSWGVRESRELSLQKGYINIQKIADHLHL--STQHVEAAQRIYLMALQRNFTMGRN 123
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
V ASCLY CR++ P +LIDFS+ L V LG +L+L ++L+++ + +D
Sbjct: 124 NSYVAASCLYTICRREKSPVMLIDFSDILQTPVKPLGKTFLKLLRLLHLS-----VPNID 178
Query: 175 PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
PS++L +F +L L KV T ++ +M RDWI TGR+P+GLCGAAL +S HG+
Sbjct: 179 PSLYLERFAHKLNLKNAIYKVTYTGIKLIQAMTRDWICTGRRPTGLCGAALLISTRMHGI 238
Query: 234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKV 293
+ I IV I T++KRL EF+NT + + + DF + L++ + +LP P V
Sbjct: 239 FVHSNTIANIVRISNPTIIKRLSEFKNTSTAKMKVSDF--DRIHLNDMPSNSLP---PCV 293
Query: 294 SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGAD 334
N K LC S EE + + G D
Sbjct: 294 IASNRKKLKQDMLKNNQTVSLCDS--EEIFSTVRSAKSGKD 332
>gi|237840591|ref|XP_002369593.1| transcription factor IIIB subunit, putative [Toxoplasma gondii
ME49]
gi|211967257|gb|EEB02453.1| transcription factor IIIB subunit, putative [Toxoplasma gondii
ME49]
gi|221503402|gb|EEE29100.1| transcription factor IIIB subunit, putative [Toxoplasma gondii VEG]
Length = 675
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 141/257 (54%), Gaps = 17/257 (6%)
Query: 26 CGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA----------SRERLMEKAF 75
CG VLED F ++++G + G FV + SRE+ +++ F
Sbjct: 12 CGTVLEDLTLVDGLQFAESSSGGVSMVGQFVSSCTGAGRGLRAGVGGGGDSREQTLQRGF 71
Query: 76 DDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 135
++++ + L + S + + A R Y +A RNFT GRR+ V ++CLY CR++ P L
Sbjct: 72 NNIQSIAERLRL-SSQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAICRRERTPHL 130
Query: 136 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKV 194
LIDF + L NV LG V+++L +VL++ + VDPS+FL +F ++ G V
Sbjct: 131 LIDFCDVLRTNVRALGQVFMKLLRVLHLQ-----VPHVDPSLFLERFACQMQLGDKTHTV 185
Query: 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
T ++ +M RDWI+TGR+P GLCGAAL ++A H + + DI IV + T+ +R
Sbjct: 186 AQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHNFQMNAEDIAHIVRVSGPTVNRR 245
Query: 255 LIEFENTDSGSLTIEDF 271
L EF+ T + L + DF
Sbjct: 246 LQEFKQTATAQLAVADF 262
>gi|221482805|gb|EEE21136.1| transcription factor IIIB subunit, putative [Toxoplasma gondii GT1]
Length = 675
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 141/257 (54%), Gaps = 17/257 (6%)
Query: 26 CGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA----------SRERLMEKAF 75
CG VLED F ++++G + G FV + SRE+ +++ F
Sbjct: 12 CGTVLEDLTLVDGLQFAESSSGGVSMVGQFVSSCTGAGRGLRAGVGGGGDSREQTLQRGF 71
Query: 76 DDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 135
++++ + L + S + + A R Y +A RNFT GRR+ V ++CLY CR++ P L
Sbjct: 72 NNIQSIAERLRL-SSQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAICRRERTPHL 130
Query: 136 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKV 194
LIDF + L NV LG V+++L +VL++ + VDPS+FL +F ++ G V
Sbjct: 131 LIDFCDVLRTNVRALGQVFMKLLRVLHLQ-----VPHVDPSLFLERFACQMQLGDKTHTV 185
Query: 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
T ++ +M RDWI+TGR+P GLCGAAL ++A H + + DI IV + T+ +R
Sbjct: 186 AQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHNFQMNAEDIAHIVRVSGPTVNRR 245
Query: 255 LIEFENTDSGSLTIEDF 271
L EF+ T + L + DF
Sbjct: 246 LQEFKQTATAQLAVADF 262
>gi|345498426|ref|XP_001607399.2| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Nasonia
vitripennis]
Length = 668
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 151/282 (53%), Gaps = 20/282 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C +C P C CG VLED+ +E TF + +G + G+FV S
Sbjct: 6 CKNCGSTNIETDPARGDAVCTECGFVLEDNIIVSETTFEETPSGNMMMIGSFVSNESSGG 65
Query: 63 ---YGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+GA SRE ++ A + + L + + + + FY +A+ R+ T+
Sbjct: 66 ATGFGAGYLVSGKESREITLQNAKKGITHLCRQLQLNQ--HCIDTSVNFYKMALNRHLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR+ A+C+Y+ CR + +LID S+ L I V+ELG YL+ Q L I +
Sbjct: 124 GRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLRFTQALCIN-----IP 178
Query: 172 QVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
+DP +++ +F ++L G +V TA ++ MKRD I +GR+PSGLCGAAL ++A
Sbjct: 179 SMDPCLYIMRFANKLEFGDKTHEVSMTALRVVQRMKRDSIHSGRRPSGLCGAALLMAARL 238
Query: 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
H S SDI+KIV + E+TL KRLIEF T S +LT+++FM
Sbjct: 239 HEFNRSPSDIIKIVKVHESTLRKRLIEFGETPSSALTLDEFM 280
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 35/144 (24%)
Query: 404 DATTEAS-------DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKE 456
DA+ E+S +G + +D+DD E+D Y+ +E+E +K +W ++N +YL
Sbjct: 412 DASKESSALSFENLEGEIDITDLDDEELDSYIMSEKEAQFKSSLWNKVNEKYL------- 464
Query: 457 AAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL 516
Q +E +A+ + EK+++R A+ KN PA +A
Sbjct: 465 ---------------------QDQKEKEEKRQKELAEGKPEKKKRRTAKKKNQNPANSAG 503
Query: 517 EATRRMLTKKRLSSKINYDVLEKL 540
EA +ML +KR+S+KINY+VL+ L
Sbjct: 504 EAIEKMLQEKRISTKINYEVLKSL 527
>gi|95007308|emb|CAJ20528.1| transcription factor IIIb subunit, putative [Toxoplasma gondii RH]
Length = 644
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 141/257 (54%), Gaps = 17/257 (6%)
Query: 26 CGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA----------SRERLMEKAF 75
CG VLED F ++++G + G FV + SRE+ +++ F
Sbjct: 12 CGTVLEDLTLVDGLQFAESSSGGVSMVGQFVSSCTGAGRGLRAGVGGGGDSREQTLQRGF 71
Query: 76 DDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 135
++++ + L + S + + A R Y +A RNFT GRR+ V ++CLY CR++ P L
Sbjct: 72 NNIQSIAERLRL-SSQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAICRRERTPHL 130
Query: 136 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKV 194
LIDF + L NV LG V+++L +VL++ + VDPS+FL +F ++ G V
Sbjct: 131 LIDFCDVLRTNVRALGQVFMKLLRVLHLQ-----VPHVDPSLFLERFACQMQLGDKTHTV 185
Query: 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
T ++ +M RDWI+TGR+P GLCGAAL ++A H + + DI IV + T+ +R
Sbjct: 186 AQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHNFQMNAEDIAHIVRVSGPTVNRR 245
Query: 255 LIEFENTDSGSLTIEDF 271
L EF+ T + L + DF
Sbjct: 246 LQEFKQTATAQLAVADF 262
>gi|448527192|ref|XP_003869453.1| Brf1 component of the general transcription factor for RNA
polymerase III (TFIIIB) [Candida orthopsilosis Co
90-125]
gi|380353806|emb|CCG23318.1| Brf1 component of the general transcription factor for RNA
polymerase III (TFIIIB) [Candida orthopsilosis]
Length = 552
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 149/585 (25%), Positives = 256/585 (43%), Gaps = 94/585 (16%)
Query: 4 CSSCARHVTGHRPYD-------SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV 56
C +C GH +D + C RCG VLE++ +E F ++++G + + G V
Sbjct: 11 CVNC-----GHTQFDVNRYTAAGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMV 65
Query: 57 RTIQSEYG---------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
Q+ SRE+ + +R++ AL I D I A ++ +A+
Sbjct: 66 GADQARATFAGGRQNAMESREQTITNGKRKIRRIAAALKI--PDFIAEAAGEWFKLALTM 123
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
NF +GRR+ V A+CLY+ACR++ P +LIDFS+ L I+VY LGA +L++ + L+I
Sbjct: 124 NFVQGRRSNNVLATCLYVACRKEKTPHMLIDFSSRLQISVYSLGATFLKMVKALHITS-- 181
Query: 168 NVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DPS+F+ F ++L KV A + M DWI GR+P+G+ GA + +
Sbjct: 182 --LPLADPSLFIQHFVEKLDFKDKATKVARDATKLAQRMSADWIHEGRRPAGVAGACVLL 239
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM-------------- 272
+A + + S S+IV I H+ + TL +RL EF+ T + L+++ F
Sbjct: 240 AARMNNFRRSHSEIVAISHVGQETLQRRLNEFKKTKAAQLSVQRFRNDEEVESANPPSFE 299
Query: 273 -ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 331
RK EL +A L + N++ +D + L + ++ + ++ +
Sbjct: 300 KNRKNELR--IARTLQRRQQET--FNDLESMTEDEKIQYLGDLSKDEQQKQILMNTIMSD 355
Query: 332 GADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERV-----PKNCTT 386
+ ER+++ ++ N + +P +KV+ + +R+ P+N
Sbjct: 356 ITINKELINEQIERILR--SKRNKMEQSLYKTPHELAKEKVEEDDLDRIWNMNWPRNLVK 413
Query: 387 QTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNR 446
+ D S +D SD DD V+ EE K+ IW +N
Sbjct: 414 NLPTTN-----------DVLKLVSSETDLNSDDDDAVVEESQMTPEEVAMKERIWTGLNH 462
Query: 447 EYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ------- 499
+Y+ EQ K A EL +A +R+++Q
Sbjct: 463 DYMVEQERKRLK-------------------HEADELTGNTSANTGANRRKRQRSSVPPE 503
Query: 500 -QKRAAEA--KNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
QK + G ++A ++ + +K +S KINY+ L+ LF
Sbjct: 504 IQKEIGDIILDEDGTPKSAGDSAKMYFSKTSVSRKINYESLQGLF 548
>gi|403215833|emb|CCK70331.1| hypothetical protein KNAG_0E00630 [Kazachstania naganishii CBS
8797]
Length = 635
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 162/284 (57%), Gaps = 19/284 (6%)
Query: 1 MVWCSSCAR--HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT 58
M C +C + V ++ L C CG V ED+ +E TF + ++G + + G+F+
Sbjct: 1 MPVCKNCKKTEFVRDLSNANNDLVCQNCGVVSEDNPIVSEVTFGETSSGAAMVQGSFISA 60
Query: 59 IQSE-----YGAS-----RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
QS +G S RE + A +R + +AL+I D I A ++Y +A++ N
Sbjct: 61 GQSHASFMSHGGSSALDSREATLNNARRKLRAVSHALSI--PDYITDAAFQWYKLALSYN 118
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
F +GRR++ V A+CLY+ACR++ +LIDFS+ L ++VY +GA +L++ + L+I
Sbjct: 119 FVQGRRSQNVIAACLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKRLHITK--- 175
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
L DPS+F+ F ++L G K KV A + M DW+ GR+P+G+ GA + ++
Sbjct: 176 -LPMADPSLFIQHFAEKLDLGDKKIKVVKDAVKLAQRMSDDWMFEGRRPAGIAGACVLLA 234
Query: 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ L+ + ++IV + H+ E TL +RL EF+ T +G L++++F
Sbjct: 235 CRMNNLRRTHTEIVSVSHVAEDTLQERLNEFKATGAGKLSVKEF 278
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
D ++ +D+DD E++ L +EE K+ IW +N EYL EQ K A A S
Sbjct: 496 DDEEDLADVDDEEIETLLLDEEAASLKERIWVGINEEYLLEQEEKRLKEEADMIAGNTST 555
Query: 471 KNCPEGLQAAQ--------ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 522
K G + + + ++ A A RK + Q+ A+ SG A TA ++ + M
Sbjct: 556 KRKRNGTKGRKRKLVKIEVDTTSSVGAMDALIRKSEMQEALKLAEESGDA-TAADSVKNM 614
Query: 523 LTKKRLSSKINYDVLEKLF 541
L K S KINY+ ++ LF
Sbjct: 615 LQKASFSKKINYNAIDNLF 633
>gi|392572943|gb|EIW66086.1| hypothetical protein TREMEDRAFT_35498, partial [Tremella
mesenterica DSM 1558]
Length = 731
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 151/282 (53%), Gaps = 22/282 (7%)
Query: 16 PYDSQL-----CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT-------IQSEY 63
P+++ L C C ++E +E F ++A G+ + G FV I+
Sbjct: 9 PFETNLSAGTTICGSCYTIVEQGILVSEIGFGESAGGRVHVQGQFVSRFATGIAGIRGAS 68
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
AS E+ + ++ + +A+NI I+ A+R+YG+AV F +GRR E + ASCL
Sbjct: 69 SASSEKAKQDGQAKVKSVGDAMNI--EPHIIRGAQRWYGLAVDNRFNRGRRIEYIVASCL 126
Query: 124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
YL CR K P +LIDFS L INVYELG YL+L +L + + + +VDP+I+ +F
Sbjct: 127 YLQCRMKKDPHMLIDFSERLTINVYELGGTYLKLRSILSL---TETMPEVDPAIYNLRFA 183
Query: 184 DRLLPGGNKKVCDTARDILASMKR---DWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+RL G V A D ++R DW+T GR+P+GLCGA L ++A H + ++
Sbjct: 184 NRLSFGAPAVVHAIAADASKLIRRFAADWMTQGRRPAGLCGACLIIAARMHDFLRTPDEV 243
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDF--MARKKELHE 280
++V + T+ +RL EF T T+E++ M + LH+
Sbjct: 244 AQVVKVAPITIHRRLREFAQTSIAKKTVEEWRNMTEEDLLHD 285
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 414 DNFSDIDDFEVDGY-LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 472
D F DIDD E+D Y + ++ E+ + +W N ++LEE+ ++ K ALE K
Sbjct: 555 DVFEDIDDEELDKYWIMDDHERDTRARMWLSSNGKWLEEEKTRQE-----KKALEEKRKG 609
Query: 473 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKI 532
R + + KR P TA EA + K+ SS++
Sbjct: 610 -------------------ESGRPKPKTKRKRPTARQKPFTTAREAITTLAIDKKFSSRV 650
Query: 533 NYDVLE 538
NYD LE
Sbjct: 651 NYDALE 656
>gi|313237620|emb|CBY12764.1| unnamed protein product [Oikopleura dioica]
Length = 569
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 149/282 (52%), Gaps = 23/282 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLS--------GNF 55
C C ++ P + C CG + E++ + F +NA G S + N
Sbjct: 5 CKKCGQYEAEEDPTTGTVVCTNCGAISEENQIVSSIQFTENAGGSSIIGTFHSADGLNNS 64
Query: 56 VRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRT 115
V I S RE + KA + + ++ L + + E A +Y +A+ ++FT+GRR
Sbjct: 65 VNHIGSR--NHREVTLRKAKESICRLCAELRLPKQHE--DEAYNYYRLALNKSFTRGRRA 120
Query: 116 EQVQASCLYLACR--QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
EQV ASC+YL+CR + +L+DFS L +NVY LG +L+L Q L I +
Sbjct: 121 EQVYASCVYLSCRLNPRQNELMLLDFSQVLKVNVYILGKTFLKLSQELNITPH-----ML 175
Query: 174 DPSIFLHKFTDRLLPGG----NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
DP ++H+F +L G NK+V +T+ I+ M RDW+T GR+P+G+CGAA ++A
Sbjct: 176 DPVFYIHRFAHQLGFGDSGTKNKEVMETSNRIVQRMNRDWMTEGRRPAGICGAAFVIAAR 235
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
HG + + DI K+ I T+ KRL EF T S LTI++F
Sbjct: 236 MHGFRCNIEDITKVFKIGPNTIRKRLHEFGATPSAKLTIDEF 277
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 35/136 (25%)
Query: 408 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEM--NREYLEEQAAKEAAAAAAKAA 465
E DG + IDD E+ + NE E K +WE N+E+++ Q K A+
Sbjct: 439 ELHDGELDLEGIDDDEISCMILNEAEVSRKTTMWENRKENKEWVKRQEEKRLEEAS---- 494
Query: 466 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPA-QTALEATRRMLT 524
N P+ +A R K++ P TA EA + ++
Sbjct: 495 ------NPPKAKRA----------------------RKRRGKSTLPEYSTAGEALQTVIK 526
Query: 525 KKRLSSKINYDVLEKL 540
+KR S+ INYDVL L
Sbjct: 527 QKRFSTNINYDVLNTL 542
>gi|399218262|emb|CCF75149.1| unnamed protein product [Babesia microti strain RI]
Length = 592
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 163/292 (55%), Gaps = 17/292 (5%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----RT 58
C CA + + C CG VLE+ + + +G S + G F+ R
Sbjct: 8 CKYCAFERIEYCDEQGETLCINCGAVLEERGMVELLQYSETPSGGSAIVGQFLPTVGCRH 67
Query: 59 IQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
+ +G+ SR +++++ + +++++ L++ S + V A+R Y +AV R+FT GR
Sbjct: 68 VTLAFGSKQSRGQIIQRGYSNIQRIAGYLHL--STQHVEAAQRIYLLAVQRSFTIGRNNL 125
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
V A CLY+ CR++ P LLIDFS+ L V LG ++++L ++L+I+ + VDPS
Sbjct: 126 HVAACCLYIICRREKTPHLLIDFSDVLQTPVKILGQIFMKLVRLLHIS-----VPNVDPS 180
Query: 177 IFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
IF +F +L + +++ T ++ +M RDW+ TGR+P+GLCGAAL V++ HG+
Sbjct: 181 IFFERFASQLKIKDKIRQITATGIRLIQAMDRDWLCTGRRPTGLCGAALVVASRYHGVPL 240
Query: 236 SKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 287
S+S + +V I T++KRL EF+ T + LT DF + +L E +LP
Sbjct: 241 SESAVANVVRISNYTIIKRLSEFKLTATARLTRGDF--ERLDLTELPQLSLP 290
>gi|417403827|gb|JAA48700.1| Putative transcription initiation factor tfiiib brf1 subunit
[Desmodus rotundus]
Length = 676
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 150/264 (56%), Gaps = 21/264 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGA-----SRER 69
C CG VLED+ +E FV+++ G S G FV ++ S + SR +
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPSLGSGFHVNLGKESRAQ 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++ + + + L + + + A F+ +AV+++ T+GR+ V A+CLYL CR
Sbjct: 85 TLQNGRRQIHHLGSQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 189
+ P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 143 EGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFG 197
Query: 190 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE
Sbjct: 198 EKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTIKEVISVVKVCE 257
Query: 249 ATLMKRLIEFENTDSGSLTIEDFM 272
+TL KRL EFE+T + LT+++FM
Sbjct: 258 STLRKRLTEFEDTPTSQLTVDEFM 281
>gi|393243240|gb|EJD50755.1| hypothetical protein AURDEDRAFT_182141 [Auricularia delicata
TFB-10046 SS5]
Length = 1042
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 157/293 (53%), Gaps = 20/293 (6%)
Query: 1 MVWCSSCA-RHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
M C +C+ H+ + C D CG V+E++ E TF + +G + + G +V
Sbjct: 235 MARCKACSGSHIESDSATGTSFCAD-CGIVVEENAIVAEITFGETGSGAAMVQGAYVGAG 293
Query: 60 QSEY-----------GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
S G SRE+ ME + Q+ +A+ + E I A+R++ +A+
Sbjct: 294 SSGARMSGMHGRQVGGESREQTMENGRRRIMQVASAMRLPEI--IGERAQRYFKLALGTG 351
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
F KGR++ V A CLY+ACRQ+ +LIDFS+ L +NV+ LG YL I+ +
Sbjct: 352 FVKGRKSLYVVAVCLYVACRQRKTSHMLIDFSDMLQVNVFSLGRTYLDFINDCNISKQD- 410
Query: 169 VLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
L+ +DP+ ++H+F L G +V A ++ DW+ GR+PSG+CGAAL ++
Sbjct: 411 -LELIDPATYIHRFASLLEFGEETSRVASDAVRLVRRFSTDWMVFGRRPSGICGAALLLA 469
Query: 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHE 280
A + + S +I+++V I + T+MKRL EF+ T S +LT+ +F R +L E
Sbjct: 470 ARMNNFRRSVQEIIQVVKIADTTIMKRLEEFKQTPSAALTVHEF--RNVDLQE 520
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 29/130 (22%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D +D+ E+DG + EE K+ IW E+NR+YL+ AAK A
Sbjct: 844 DELLGLDEDELDGLILTPEEVQLKERIWVEINRDYLQNLAAKMAV--------------- 888
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT--RRMLTKKRLSSK 531
E A A K RK+ Q + ++ N T L+A R L K++S K
Sbjct: 889 --------ESGGGAEAQKRKPRKKGQGNKPRDSNNP----TGLDAVDAARKLVHKKVSKK 936
Query: 532 INYDVLEKLF 541
INY LE LF
Sbjct: 937 INYAALEGLF 946
>gi|325090389|gb|EGC43699.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus H88]
Length = 837
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 148/269 (55%), Gaps = 18/269 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG------------- 64
D C CG V+ + N +E TF ++A+G + + G FV QS YG
Sbjct: 68 DGMKVCSGCGTVVSEANIVSEITFGESASGAAVVQGTFVGAGQS-YGRSFGPGFQRGGGM 126
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY
Sbjct: 127 ESREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLY 184
Query: 125 LACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
+ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 185 IACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFA 244
Query: 184 DRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 242
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V
Sbjct: 245 KQLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVY 304
Query: 243 IVHICEATLMKRLIEFENTDSGSLTIEDF 271
+V + E T+ +RL EF+ T+SG LT++ F
Sbjct: 305 VVKVTELTIHQRLNEFKATESGDLTVDQF 333
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 512 AQTALEATRRMLTKKRLSSKINYDVLEKLFDD 543
A T EATRRML ++ S KINY +LE++++D
Sbjct: 603 ASTPAEATRRMLEQRGFSKKINYRLLEEMYED 634
>gi|255721757|ref|XP_002545813.1| hypothetical protein CTRG_00594 [Candida tropicalis MYA-3404]
gi|240136302|gb|EER35855.1| hypothetical protein CTRG_00594 [Candida tropicalis MYA-3404]
Length = 553
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 148/560 (26%), Positives = 257/560 (45%), Gaps = 93/560 (16%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG---------ASRERLM 71
+CC RCG V E++ +E F ++++G + + G V Q+ SRE+ +
Sbjct: 29 VCCLRCGTVTEENPIVSEVQFGESSSGAAMVQGAMVGADQARATFAGGRQNAMESREQTI 88
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
++++ A+ I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++
Sbjct: 89 NTGKRRIKRIAAAMKI--PDYIADAAAEWFRLALTLNFVQGRRSHNVLATCLYVACRKER 146
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGG 190
+LIDFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L
Sbjct: 147 THHMLIDFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDK 202
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 250
KV A + M DWI GR+P+G+ GA + ++A + + S ++IV + H+ E T
Sbjct: 203 ATKVAKDAVKLAHRMAADWIHEGRRPAGIAGACVLLAARMNNFRRSHAEIVAVSHVGEET 262
Query: 251 LMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP----NNGPKVSGMNEVLCKHKDT 306
L +RL EF+ T +G L+I+ F +E+ ++N P N ++ ++ + +DT
Sbjct: 263 LQRRLNEFKKTKAGQLSIKSF----REVEHLESSNPPSFEKNRAMELKIAKKLQQQQQDT 318
Query: 307 GKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERE---RMVKASAEENSSFERESDS 363
+E I+E G D P +V + E +++ + + + ++ +
Sbjct: 319 ------------FEGLTKITEA--NGDDIPLKKVDKEELQKQILLNTILSDITITSDTLN 364
Query: 364 PFMSRVDKVQSPEPERVPKNCTTQTA---SNEGEGDHTKT-------------PGVDATT 407
M R+ K++ E N +T SN E D K P D
Sbjct: 365 EQMDRILKMKKTSLE----NSLYKTPYELSNSQESDLDKIWDMNRPRNLVKNLPKTDEIL 420
Query: 408 E--ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 465
E +S+ N D D+ ++ L EEE K+ IW +N +Y+ EQ K +
Sbjct: 421 EKVSSEMELNSDDDDEIVMESKL-TEEEIAIKERIWTGLNHDYMVEQEKK-------RLK 472
Query: 466 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA----------EAKNSGPAQTA 515
+EA EL + + +R++K + E G ++A
Sbjct: 473 MEAD------------ELTGNTSNSSGGNRRKKNKNSLPPELRKDFGDIELDEDGTPRSA 520
Query: 516 LEATRRMLTKKRLSSKINYD 535
++ +R + K +S KINYD
Sbjct: 521 ADSAKRYIAKTSVSKKINYD 540
>gi|154276374|ref|XP_001539032.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414105|gb|EDN09470.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 818
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 148/269 (55%), Gaps = 18/269 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG------------- 64
D C CG V+ + N +E TF ++A+G + + G FV QS YG
Sbjct: 68 DGMKVCSGCGTVVSEANIVSEITFGESASGAAVVQGTFVGAGQS-YGRSFGPGFQRGGGM 126
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY
Sbjct: 127 ESREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLY 184
Query: 125 LACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
+ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 185 IACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFA 244
Query: 184 DRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 242
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V
Sbjct: 245 KQLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVY 304
Query: 243 IVHICEATLMKRLIEFENTDSGSLTIEDF 271
+V + E T+ +RL EF+ T+SG LT++ F
Sbjct: 305 VVKVTELTIHQRLKEFKATESGDLTVDQF 333
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 514 TALEATRRMLTKKRLSSKINYDVLEKLFDD 543
T EATRRML ++ S KINY +LE++++D
Sbjct: 603 TPAEATRRMLEQRGFSKKINYRLLEEMYED 632
>gi|225560369|gb|EEH08651.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus G186AR]
Length = 832
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 148/269 (55%), Gaps = 18/269 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG------------- 64
D C CG V+ + N +E TF ++A+G + + G FV QS YG
Sbjct: 68 DGMKVCSGCGTVVSEANIVSEITFGESASGAAVVQGTFVGAGQS-YGRSFGPGFQRGGGM 126
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY
Sbjct: 127 ESREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLY 184
Query: 125 LACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
+ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 185 IACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFA 244
Query: 184 DRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 242
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V
Sbjct: 245 KQLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVY 304
Query: 243 IVHICEATLMKRLIEFENTDSGSLTIEDF 271
+V + E T+ +RL EF+ T+SG LT++ F
Sbjct: 305 VVKVTELTIHQRLNEFKATESGDLTVDQF 333
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 512 AQTALEATRRMLTKKRLSSKINYDVLEKLFDD 543
A T EATRRML ++ S KINY +LE++++D
Sbjct: 603 ASTPAEATRRMLEQRGFSKKINYRLLEEMYED 634
>gi|240278695|gb|EER42201.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus H143]
Length = 774
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 151/275 (54%), Gaps = 18/275 (6%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG------------- 64
D C CG V+ + N +E TF ++A+G + + G FV QS YG
Sbjct: 68 DGMKVCSGCGTVVSEANIVSEITFGESASGAAVVQGTFVGAGQS-YGRSFGPGFQRGGGM 126
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY
Sbjct: 127 ESREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLY 184
Query: 125 LACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
+ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 185 IACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFA 244
Query: 184 DRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 242
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V
Sbjct: 245 KQLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVY 304
Query: 243 IVHICEATLMKRLIEFENTDSGSLTIEDFMARKKE 277
+V + E T+ +RL EF+ T+SG LT++ F + + E
Sbjct: 305 VVKVTELTIHQRLNEFKATESGDLTVDQFRSVQLE 339
>gi|406603760|emb|CCH44785.1| Transcription factor IIIB subunit [Wickerhamomyces ciferrii]
Length = 559
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 151/264 (57%), Gaps = 17/264 (6%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYG----------ASRE 68
S L C CG+V E++ +E TF +++ G + + G FV Q+ SR
Sbjct: 25 SDLACQNCGRVFEENPIVSEVTFGESSTGAATVQGAFVGADQAHAAFAGGPRGNSMDSRT 84
Query: 69 RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 128
+ + A +R + AL I E + A +++ +A++ NF KGR+++ V A+CLY++CR
Sbjct: 85 KTLASAKRKIRAVATALKIPEY--VSDAAYQWFSLALSNNFVKGRKSQNVIAACLYISCR 142
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
++ +LIDFS L I+VY +GA +L++ + L+I L DPS+F+ F ++L
Sbjct: 143 KEKTHHMLIDFSARLQISVYSVGATFLKMVKALHITK----LPLADPSLFIQHFAEKLDF 198
Query: 189 GGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G ++ K+ A + M DWI GR+P+G+ GA L ++A + + + +IV + H+
Sbjct: 199 GDDRVKIVKDAVKLAQRMSEDWIHEGRRPAGVAGACLLLAARMNNHRRTHGEIVAVAHVG 258
Query: 248 EATLMKRLIEFENTDSGSLTIEDF 271
E TL +RL EF+ T +GSLTI++F
Sbjct: 259 EDTLQRRLNEFKETHAGSLTIKEF 282
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 50/129 (38%), Gaps = 33/129 (25%)
Query: 424 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 483
+D +L EEE K+ +W +N EYL EQ K A A E S P
Sbjct: 454 LDNFLLTEEESKLKERVWVGLNEEYLLEQEQKRLKAEAD----EISGHQQP--------- 500
Query: 484 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALE----------ATRRMLTKKRLSSKIN 533
K RK+ K + N Q A+ A R +LTKK S KIN
Sbjct: 501 ---------KKRKKPNTKNEDDPLNDDNVQNAINKIGEGNSVSAAARSVLTKK-ASKKIN 550
Query: 534 YDVLEKLFD 542
Y L LF+
Sbjct: 551 YMALNNLFE 559
>gi|159476536|ref|XP_001696367.1| hypothetical protein CHLREDRAFT_112803 [Chlamydomonas reinhardtii]
gi|158282592|gb|EDP08344.1| predicted protein [Chlamydomonas reinhardtii]
Length = 167
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 121/165 (73%), Gaps = 3/165 (1%)
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
RNFT+GRR QV A CLY+ CR + +P++LIDFS++L++NVY LGAV+LQL ++L + +
Sbjct: 3 RNFTRGRRVNQVAAVCLYIFCRLERRPYMLIDFSDHLSVNVYALGAVFLQLLKLLRLDEH 62
Query: 167 SNVLKQVDPSIFLHKFTDRL-LPGG--NKKVCDTARDILASMKRDWITTGRKPSGLCGAA 223
+ K +DPS+FL++F DRL LP KV +TA ++ SMKRDW+ TGR+PSG+CGAA
Sbjct: 63 GTLTKPIDPSLFLNRFVDRLRLPTQELKSKVGNTAMRLVQSMKRDWMLTGRRPSGICGAA 122
Query: 224 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 268
L+++A HG++ +K D++ IVHI AT+ KR++E T LT+
Sbjct: 123 LFLAAHIHGVEKTKRDVIAIVHIGWATVEKRVMELAETRDAQLTL 167
>gi|328871796|gb|EGG20166.1| TATA box-binding protein-associated factor [Dictyostelium
fasciculatum]
Length = 750
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 147/260 (56%), Gaps = 20/260 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR--------TIQSEYGASRERLMEKA 74
C C +V++ N +E F + + L G FV + +S G SR E A
Sbjct: 22 CTGCSRVIDGSNIVSELQFSETSG----LMGTFVNARGQVGRGSYRSLGGESRALSTENA 77
Query: 75 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF 134
M + A +G D + + R Y A+ FTKGR T+ V A+CLY CR++ P
Sbjct: 78 RRRMHTI--AGQVGLKDVHIDMGVRLYETAMDFKFTKGRSTQIVSATCLYTVCRRELTPH 135
Query: 135 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKK 193
LLIDFS + +NV+ L + +L+ Q L L VDP++F+ +F L ++
Sbjct: 136 LLIDFSEAIQLNVFVLASTFLKFIQTLGFQ-----LPLVDPALFIQRFAVGLEFEQKTQE 190
Query: 194 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 253
V +TA ++A MKRDW++ GR+PSG+CGA+L+++A HG K + +IV++V I E T++K
Sbjct: 191 VANTALKLVARMKRDWMSIGRRPSGICGASLFIAAKIHGFKRTVKEIVQVVKIGEDTIIK 250
Query: 254 RLIEFENTDSGSLTIEDFMA 273
RL EF++T S +LTI++F A
Sbjct: 251 RLKEFKDTPSAALTIDEFDA 270
>gi|68487944|ref|XP_712189.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|68488941|ref|XP_711715.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|1174644|sp|P43072.1|TF3B_CANAL RecName: Full=Transcription factor IIIB 70 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1
gi|619452|emb|CAA87398.1| TFIIB related subunit of TFIIIB (BRF1) [Candida albicans]
gi|46433036|gb|EAK92493.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|46433560|gb|EAK92996.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|238880004|gb|EEQ43642.1| hypothetical protein CAWG_01886 [Candida albicans WO-1]
Length = 553
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 154/598 (25%), Positives = 262/598 (43%), Gaps = 120/598 (20%)
Query: 4 CSSCARHVTGHRPYD-------SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV 56
C +C GH +D + C RCG VLE++ +E F ++++G + + G V
Sbjct: 10 CKTC-----GHTQFDVNRYTAAGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMV 64
Query: 57 RTIQSEYG---------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
Q+ SRE+ + ++++ AL I D I A ++ +A+
Sbjct: 65 GADQARATFAGGRQNAMESREQTLSNGKRKIKRIAAALKI--PDYIAEAAGEWFRLALTL 122
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
NF +GRR+ V A+CLY+ACR++ +LIDFS+ L I+VY LGA +L++ + L+I
Sbjct: 123 NFVQGRRSNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS-- 180
Query: 168 NVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DPS+F+ F ++L KV A + M DWI GR+P+G+ GA + +
Sbjct: 181 --LPLADPSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADWIHEGRRPAGIAGACVLL 238
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANL 286
+A + + S ++IV + H+ E TL +RL EF+ T +G+L+++ F +E+ E + ++
Sbjct: 239 AARMNNFRRSHAEIVAVSHVGEETLQRRLNEFKKTKAGTLSVKSF----REV-ENLESSN 293
Query: 287 PNNGPKVSGMN---------------EVLCKHKDTGKPFACG-----------LCRSCYE 320
P + K M E L K + K G L +
Sbjct: 294 PPSFEKNRAMELKISKKLQQQQTDNFEDLSKMTEEEKQSVFGKLSKEEAQKQLLMNTILS 353
Query: 321 EFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERV 380
+ +E L D R +K S+ ENS ++ +P+ + +P ++
Sbjct: 354 DITITTENLNDQMD--------RILKMKKSSLENSLYK----TPYELALANGSEQDPSKI 401
Query: 381 -----PKNCTTQTASNEGEGDHTKTPGVDATTE--ASDGSDNFSDIDDFEVDGYLHNEEE 433
PKN P D + +S+ N D D+ ++ L EEE
Sbjct: 402 WNINKPKNLVAN------------LPKTDDILQNVSSEVELNSDDDDEIVLESKL-TEEE 448
Query: 434 KHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAK 493
K+ IW +N +YL EQ K Q A EL + + +
Sbjct: 449 VAIKERIWTGLNHDYLVEQEKKRLK-------------------QEADELTGNTSKSSSG 489
Query: 494 SRKEKQQKR-AAEAKN---------SGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
+R+++ + AE + G ++A ++ + ++K +S KINYD L+ L
Sbjct: 490 NRRKRNKSSLPAELRKELGDIDLDEDGTPRSAADSAKMYISKTSVSKKINYDSLKGLL 547
>gi|313217012|emb|CBY38206.1| unnamed protein product [Oikopleura dioica]
Length = 357
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 149/282 (52%), Gaps = 23/282 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLS--------GNF 55
C C ++ P + C CG + E++ + F +NA G S + N
Sbjct: 5 CKKCGQYEAEEDPTTGTVVCTNCGAISEENQIVSSIQFTENAGGSSIIGTFHSADGLNNS 64
Query: 56 VRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRT 115
V I S RE + KA + + ++ L + + E A +Y +A+ ++FT+GRR
Sbjct: 65 VNHIGSR--NHREVTLRKAKESICRLCAELRLPKQHE--DEAYNYYRLALNKSFTRGRRA 120
Query: 116 EQVQASCLYLACR--QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
EQV ASC+YL+CR + +L+DFS L +NVY LG +L+L Q L I +
Sbjct: 121 EQVYASCVYLSCRLNPRQNELMLLDFSQVLKVNVYILGKTFLKLSQELNITPH-----ML 175
Query: 174 DPSIFLHKFTDRLLPGG----NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
DP ++H+F +L G NK+V +T+ I+ M RDW+T GR+P+G+CGAA ++A
Sbjct: 176 DPVFYIHRFAHQLGFGDSGTKNKEVMETSNRIVQRMNRDWMTEGRRPAGICGAAFVIAAR 235
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
HG + + DI K+ I T+ KRL EF T S LTI++F
Sbjct: 236 MHGFRCNIEDITKVFKIGPNTIRKRLHEFGATPSAKLTIDEF 277
>gi|358368039|dbj|GAA84657.1| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
kawachii IFO 4308]
Length = 752
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 150/267 (56%), Gaps = 15/267 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------S 66
D Q C CG V+ + N +E TF ++++G + + G FV QS YG S
Sbjct: 73 DGQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSHVRSYGPGFQRGGAES 132
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE + + Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+A
Sbjct: 133 REITEQNGNRYITQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIA 190
Query: 127 CR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F +
Sbjct: 191 CRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQ 250
Query: 186 LLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V
Sbjct: 251 LEFGSATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVV 310
Query: 245 HICEATLMKRLIEFENTDSGSLTIEDF 271
+ E T+ +RL EF +T+SG LT++ F
Sbjct: 311 KVTEITISQRLNEFSSTESGELTVDQF 337
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 413 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 466
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 486 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL 539
Query: 467 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 516
A + A V K RK ++ + E ++ S A T
Sbjct: 540 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDADGRSTRASTPA 587
Query: 517 EATRRMLTKKRLSSKINYDVLEKLFDD 543
EATRRML ++ S KINY +LE LF D
Sbjct: 588 EATRRMLERRGFSKKINYRLLESLFGD 614
>gi|448100207|ref|XP_004199299.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
gi|359380721|emb|CCE82962.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
Length = 571
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 153/278 (55%), Gaps = 19/278 (6%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------SRERL 70
+ + C RCG V E++ +E + +++ G + + G V Q+ YG SRE+
Sbjct: 25 ADVSCSRCGTVREENPIVSEVQYGESSTGAAMVQGAMVGADQARAPYGGRQNAMESREQT 84
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
EK ++++ AL I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 85 FEKGKKRIKKIATALRI--PDYISDAASEWFRLALLNNFVQGRRSQNVLAACLYVACRKE 142
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L I+VY LGA +L++ + L I L DPS+F+ F ++L
Sbjct: 143 KTHHMLIDFSSRLQISVYSLGATFLKMVKALQITK----LPLADPSLFIQHFVEKLGFRE 198
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M DWI GR+P+G+ GA + ++A + + + ++IV + H+ E
Sbjct: 199 STSKVIKDAVKLAQRMANDWIHEGRRPAGIAGACVLLAARMNNFRRTHAEIVAVAHVAEE 258
Query: 250 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 287
TL +RL EF+ T SG LT+E F ++ H +N P
Sbjct: 259 TLQRRLNEFKKTKSGELTVESF----RQSHRTEISNPP 292
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 39/161 (24%)
Query: 404 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 463
D ++ S +F D+D+ E+D +L ++E K+ +W +N ++L Q K
Sbjct: 422 DLLSKISSNPKDFEDLDEEELDQFLLTDDEYKLKERVWTGLNHDFLVNQEKKRLK----- 476
Query: 464 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ--------------------QKRA 503
Q A EL + A K R++ + + A
Sbjct: 477 --------------QEADELTGNTSGATRKKRRQNKSPLDGIEGIGGDIVSEMGVCEAIA 522
Query: 504 AEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 544
+++G +A ++ RRML+KK S KINY L LFDD+
Sbjct: 523 GIGESAGEPLSAADSARRMLSKKAFSKKINYASLGDLFDDN 563
>gi|294949376|ref|XP_002786166.1| transcription initiation factor brf1, putative [Perkinsus marinus
ATCC 50983]
gi|239900323|gb|EER17962.1| transcription initiation factor brf1, putative [Perkinsus marinus
ATCC 50983]
Length = 597
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 154/261 (59%), Gaps = 13/261 (4%)
Query: 20 QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----YGASRERLM--E 72
Q C CG+VLE++ E +F + + ++ ++G V + Y + RL+ +
Sbjct: 23 QTVCLGCGEVLEENRVVCELSFTQ-SGDRTGVNGQSVPWLGGGGRRGGYSSENSRLLTLQ 81
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ + + N L + S + AKR + +A RNFT GR+T V A+CLY+ CR+
Sbjct: 82 RGSTRIEWIGNRLELPTS--TMDEAKRLFSLAAQRNFTAGRKTSVVAAACLYIVCRRDRT 139
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 192
P+LLIDFS+ L+I+V E+G +Y++L ++L + D+ + +DPS+F+ +F+ L G +
Sbjct: 140 PYLLIDFSDVLHISVREIGQMYMKLVRLLSL-DKVLDIPVIDPSMFMERFSSHLGLGDKQ 198
Query: 193 -KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEAT 250
+V TA ++ M RDWI TGR+P+GLCGAAL ++A HG++ + + + +V I T
Sbjct: 199 NQVVHTAIRLIQLMSRDWICTGRRPTGLCGAALLIAARYHGVEDVTANSVAGVVRIGAVT 258
Query: 251 LMKRLIEFENTDSGSLTIEDF 271
L +RL E ++T + +LT E F
Sbjct: 259 LKRRLYELKHTPTAALTTEQF 279
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 24/130 (18%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
++ SD+ D E++GYL EE K IW + N+ YL E A ++ A + A + + +N
Sbjct: 488 ESISDVSDSEIEGYLLTPEESEAKSAIWHQWNKPYLMEWAIRDEQRKAKRRAEDEAKRNG 547
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RLSSK 531
K +KR + GPA +ALEAT+ L+KK LS++
Sbjct: 548 ----------------------TYKPRKRPIHSAPMGPADSALEATQMALSKKARSLSNR 585
Query: 532 INYDVLEKLF 541
+N LE+LF
Sbjct: 586 VNMSALEELF 595
>gi|448103917|ref|XP_004200158.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
gi|359381580|emb|CCE82039.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
Length = 570
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 147/262 (56%), Gaps = 15/262 (5%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE--YGA------SRERL 70
+ + C RCG V E++ +E + +++ G + + G V Q+ YG SRE+
Sbjct: 25 ADVSCSRCGTVREENPIVSEVQYGESSTGAAMVQGAMVGADQARAPYGGRQNAMESREQT 84
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
EK ++++ AL I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 85 FEKGKKRIKKIATALRI--PDYISDAASEWFRLALLNNFVQGRRSQNVLAACLYVACRKE 142
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
+LIDFS+ L I+VY LGA +L++ + L I L DPS+F+ F ++L
Sbjct: 143 KTHHMLIDFSSRLQISVYSLGATFLKMVKALQITK----LPLADPSLFIQHFVEKLDFRE 198
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
KV A + M DWI GR+P+G+ GA + ++A + + + ++IV + H+ E
Sbjct: 199 STSKVIKDAVKLAQRMANDWIHEGRRPAGIAGACVLLAARMNNFRRTHAEIVAVAHVAEE 258
Query: 250 TLMKRLIEFENTDSGSLTIEDF 271
TL +RL EF+ T SG LT+E F
Sbjct: 259 TLQRRLNEFKKTKSGELTVESF 280
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 38/160 (23%)
Query: 404 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 463
D ++ S +F D+DD E+D +L E+E K+ +W +N ++L Q K
Sbjct: 422 DLLSKISSDPKDFEDLDDEELDQFLLTEDEYKLKERVWTGLNHDFLVNQEKKRLK----- 476
Query: 464 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ-------------------QKRAA 504
Q A EL + A K R++ + + A
Sbjct: 477 --------------QEADELTGNTSGATRKKRRQNKSPLDNIEGIGGDIVSEMGVSEAIA 522
Query: 505 EAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 544
SG +A ++ RRML+KK S KINY L LFDD+
Sbjct: 523 GIGESGEPLSAADSARRMLSKKAFSKKINYASLGDLFDDN 562
>gi|294914332|ref|XP_002778249.1| Transcription factor IIIB 90 kDa subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239886452|gb|EER10044.1| Transcription factor IIIB 90 kDa subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 564
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 154/261 (59%), Gaps = 13/261 (4%)
Query: 20 QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----YGASRERLM--E 72
Q C CG+VLE++ E +F + + ++ ++G V + Y + RL+ +
Sbjct: 7 QTVCLGCGEVLEENRVVCELSFTQ-SGDRTGVNGQSVPWLGGGGRRGGYSSENSRLLTLQ 65
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ + + N L + S + AKR + +A RNFT GR+T V A+CLY+ CR+
Sbjct: 66 RGSTRIEWIGNRLELPTS--TMDEAKRLFSLAAQRNFTAGRKTSVVAAACLYIVCRRDRT 123
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 192
P+LLIDFS+ L+++V E+G +Y++L ++L + D+ + +DPS+F+ +F+ L G +
Sbjct: 124 PYLLIDFSDVLHVSVREIGQMYMKLVRLLSL-DKVLDIPVIDPSMFMERFSSHLGLGDKQ 182
Query: 193 -KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEAT 250
+V TA ++ M RDWI TGR+P+GLCGAAL ++A HG++ + + + +V I T
Sbjct: 183 NQVVHTAIRLIQLMSRDWICTGRRPTGLCGAALLIAARYHGVENVTANSVAGVVRIGAVT 242
Query: 251 LMKRLIEFENTDSGSLTIEDF 271
L +RL E ++T + +LT E F
Sbjct: 243 LKRRLYELKHTPTAALTTEQF 263
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 24/133 (18%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
D ++ SD+ D E++GYL EE K IW + N+ YL E A ++ A K A + +
Sbjct: 452 DDEESISDVSDSEIEGYLLTPEESEAKSAIWHQWNKPYLMEWAIRDEQRKAKKRAEDEAK 511
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RL 528
+N K +KR + GPA +ALEAT+ L+KK L
Sbjct: 512 RNG----------------------TYKPRKRPVPSTAMGPADSALEATQMALSKKARSL 549
Query: 529 SSKINYDVLEKLF 541
S+++N LE+LF
Sbjct: 550 SNRVNMSALEELF 562
>gi|241958762|ref|XP_002422100.1| tanscription factor TFIIIB subunit, putative; transcription factor
IIIB subunit, putative [Candida dubliniensis CD36]
gi|223645445|emb|CAX40101.1| tanscription factor TFIIIB subunit, putative [Candida dubliniensis
CD36]
Length = 553
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 148/583 (25%), Positives = 261/583 (44%), Gaps = 90/583 (15%)
Query: 4 CSSCARHVTGHRPYD-------SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV 56
C +C GH +D + C RCG VLE++ +E F ++++G + + G V
Sbjct: 10 CKTC-----GHTQFDVNRYTAAGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMV 64
Query: 57 RTIQSEYG---------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
Q+ SRE+ + ++++ AL I D I A ++ +A+
Sbjct: 65 GADQARATFAGGRQNAMESREQTLSNGKRKIKRIAAALKI--PDYIAEAAGEWFRLALTL 122
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
NF +GRR+ V A+CLY+ACR++ +LIDFS+ L I+VY LGA +L++ + L+I
Sbjct: 123 NFVQGRRSNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS-- 180
Query: 168 NVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DPS+F+ F ++L KV A + M DWI GR+P+G+ GA + +
Sbjct: 181 --LPLADPSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADWIHEGRRPAGIAGACVLL 238
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANL 286
+A + + S ++IV + H+ E TL +RL EF+ T +G L+I+ F +E+ ++N
Sbjct: 239 AARMNNFRRSHAEIVAVSHVGEETLQRRLNEFKKTKAGELSIKSF----REVDNLESSNP 294
Query: 287 PNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERE-- 344
P+ K++ + L + + F +++ E + ++++ E
Sbjct: 295 PS-----------FEKNRAMELKISKKLQQQQTDNFEDLTKMTEEERNSVFGKLSKEEAQ 343
Query: 345 -RMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTA-SNEGEGDHTKTPG 402
+++ + + + E+ + M R+ K++ E + A +N E D T+
Sbjct: 344 KQLLMNTILSDITITSETLNDQMDRILKMKKTSLENSLYKTPYELALANGSENDPTRIWN 403
Query: 403 V--------------DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 448
+ D S + SD DD V EEE K+ IW +N +Y
Sbjct: 404 INKPRNLVANLPKTDDILQNVSSEVELNSDDDDEIVRESKLTEEEVAIKERIWTGLNHDY 463
Query: 449 LEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKR-AAEAK 507
L EQ K Q A EL + + +R+++ + AE +
Sbjct: 464 LVEQEKKRLK-------------------QEADELTGNTSKTSSSNRRKRNKSSLPAELR 504
Query: 508 N---------SGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
G ++A ++ + ++K +S KINYD L+ L
Sbjct: 505 KELGDIDLDEDGTPRSAADSAKMYISKTSVSKKINYDSLKGLL 547
>gi|443896379|dbj|GAC73723.1| transcription initiation factor TFIIIB, Brf1 subunit [Pseudozyma
antarctica T-34]
Length = 763
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 160/294 (54%), Gaps = 36/294 (12%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C++C + D+Q C +CG VLE+ ++ TF +N+AG + + G+ + Q+
Sbjct: 3 CTNCGSSAIDY--ADNQAVCSQCGVVLEESQIVSDITFGENSAGGAVVQGSMIAADQARA 60
Query: 63 ------------YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV----- 105
SRE + A + M +AL I + A RF+ +A+
Sbjct: 61 RVSGPGGFRGGYVSESREMTISNARTGIHNMASALRI--PSHVADRALRFFTLALDGGAS 118
Query: 106 ------ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
+N+ GR++E ASCLY+ACR + +LIDF++ + +NV+ LG YL+L +
Sbjct: 119 AATGDEPKNYVLGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNVFILGRSYLKLIR 178
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGN--KKVCDTARDILASMKRDWITTGRKPS 217
VL + L +DPSI++ +F LL G+ +KV A +++ ++DWIT GR+P+
Sbjct: 179 VLNLR-----LPLIDPSIYIARFA-ALLDFGDETQKVAYDASRLVSRFQKDWITEGRRPA 232
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
G+CGA L ++A + + S S+++++V I + TL RL EF+ T SG LT++DF
Sbjct: 233 GICGACLMLAARMNHFRRSVSEVIQVVKIADVTLRARLDEFKKTPSGQLTVQDF 286
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 400 TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 459
T G + A+ G D +D+D+ E+D ++ + EE K+ +W E N++++E+ K+
Sbjct: 509 TSGGRRRSVAAAGVDELADLDEEELDRFILSPEEVRIKERVWMEFNKDWMEQTLKKQLK- 567
Query: 460 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 519
L+ Q++ + + K K+ K +A + +A E+
Sbjct: 568 -----------------LEHDQKM----GVPIREPYKRKKPKAPRDASTAMHTSSAAESA 606
Query: 520 RRMLTKKRLSSKINYDVLEKLF 541
+ ML +K+ S KINYD L LF
Sbjct: 607 KMMLKQKQFSKKINYDALNNLF 628
>gi|194743354|ref|XP_001954165.1| GF16885 [Drosophila ananassae]
gi|190627202|gb|EDV42726.1| GF16885 [Drosophila ananassae]
Length = 665
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 162/586 (27%), Positives = 260/586 (44%), Gaps = 110/586 (18%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C +C + C CG VLED +E F + G + + G FV + +S
Sbjct: 7 CRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFV-SAESSG 64
Query: 64 GA---------------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARN 108
GA SRE ++KA D+ + L S A F+ +A++R+
Sbjct: 65 GATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALSRH 122
Query: 109 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL+L L I
Sbjct: 123 LTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN---- 178
Query: 169 VLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
+ VDP +++ +F +RL G +V TA I+ MK+D + +GR+P+GLCGAAL ++
Sbjct: 179 -IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIA 237
Query: 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM--------------- 272
A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 238 ARMHDFNRTLLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTVDLEREQDPPSFKA 297
Query: 273 ARKK--------------ELHEGVAANLPNN-GPKVSGMNEVLCKHKDTGKPFACGLCRS 317
ARKK EL + + A+L + G + + + L K T + +S
Sbjct: 298 ARKKDRERIKDIGEQELTELQKQIDAHLEKDLGKYANSVFQKLAHGKSTTITSSPSTPKS 357
Query: 318 CYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEP 377
E + + E + F ++K +++ ++ +S ++ ++ P+
Sbjct: 358 ISENELEMEESRQ-------FIEQSNAEVIKDLIDKDEGVKKVEPGGLVSGIEGLR-PDI 409
Query: 378 ERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYK 437
E + C T S+ + + TK P TE N ++D + + EEE K
Sbjct: 410 EAI---CRV-TQSDLEDVERTKAP---QETELFIEDLNDDELDQY-----VLTEEEAVSK 457
Query: 438 KIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKE 497
+W+ +N EYL EQ +E +AK R+E
Sbjct: 458 LDMWKNLNAEYLREQQERE--------------------------------ERLAKEREE 485
Query: 498 KQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
+ +R GP+ TA EA +ML +K++SSKINY++L+ L
Sbjct: 486 GKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINYEILKTL 531
>gi|193599116|ref|XP_001950065.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Acyrthosiphon pisum]
Length = 491
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 164/566 (28%), Positives = 254/566 (44%), Gaps = 146/566 (25%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-----EYGA------- 65
D C CG V+++ + +E F + G S+ G F+ + +G+
Sbjct: 15 DGPTVCMDCGGVMDESHIVSEVQFEETDHG-SRAVGQFLSSDSQAANFHNFGSAFHHGMK 73
Query: 66 --SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
SRE KA ++ + N+LN+ S + + A +Y +A+ R+FT+GR+ + A+ +
Sbjct: 74 QPSREMTQAKARRGIQVLSNSLNL--SPQTLENACVYYNMALKRHFTRGRKNALIYAASV 131
Query: 124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
Y+ACR + +L+D ++ +N +ELG YL++ Q L + + +DPSIFL +F
Sbjct: 132 YIACRMEGTMHMLLDVADASEVNAFELGKTYLRMMQTLTLT-----VPSLDPSIFLMRFV 186
Query: 184 DRLLPGGNKKVC-DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 242
+ L G + TA +L M RD I TGR+PS LCGAAL +S H + DI+K
Sbjct: 187 NSLDFGDKTHIVYTTAMRLLQRMMRDSIHTGRRPSSLCGAALLISGRMHDFNRTTDDIIK 246
Query: 243 IVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCK 302
+VH ATL KRL+EF++T S L+I
Sbjct: 247 VVHCHHATLKKRLLEFKDTPSSMLSI---------------------------------- 272
Query: 303 HKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA---ERERMVKASAEENSSFER 359
EEFMT+ LE DPP+++VA ++ER+ K F
Sbjct: 273 -----------------EEFMTVD--LEETHDPPSYRVARARDKERIDK--------FFE 305
Query: 360 ESDSPFMSRVDKVQSP-EPERVPKNCTTQTASNEGE---------GDHTKTPGVDATTEA 409
+DS + +D+V++ E E K TT N E G K V + E
Sbjct: 306 ANDSEKV--IDEVKTAIEKELSKKKNTTVLGVNLVEIAAAVSPEPGSSCKPVNVGPSLEI 363
Query: 410 SDGSDNFSD--------------IDDFEVDGYLHNEEEKHYKKIIWEEMN-REYLEEQAA 454
S+N ID+ E+D Y+ ++E K+ +W +M+ + + Q +
Sbjct: 364 MGLSENKRSYEEDDEEESMCDVVIDEDEIDSYILSKESHQIKRNMWMKMHGTAFRKMQLS 423
Query: 455 KEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQT 514
+E A KN P+ ++A KEK+ K A PA+T
Sbjct: 424 REERA-----------KN-PKVIRA----------------KEKKAKNALRT----PAKT 451
Query: 515 ALEATRRMLTKKRLSSKINYDVLEKL 540
A EA R+L KK+LSSKINYD+L+ L
Sbjct: 452 AAEAVERVLKKKKLSSKINYDILDNL 477
>gi|213407030|ref|XP_002174286.1| transcription initiation factor IIB [Schizosaccharomyces japonicus
yFS275]
gi|212002333|gb|EEB07993.1| transcription initiation factor IIB [Schizosaccharomyces japonicus
yFS275]
Length = 508
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 153/278 (55%), Gaps = 15/278 (5%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
CS+C C +CG V E + +E TF + + G + + G+ + Q+
Sbjct: 3 CSTCGSSSLESDQSSGNTYCVKCGTVCEQNVIVSEVTFGEASTGAAIVQGSLISQDQTHA 62
Query: 63 --YGASRE------RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR 114
+G R+ R M + R A + +D V A R++ +A+ NF KGRR
Sbjct: 63 RTFGPYRKHNQLESREMTISNGRKRIAALARTLRLTDRHVEAAVRYFTLAINHNFIKGRR 122
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
++ V ASCLY+ CR +LIDFS+ L INV++LG+ +L+LC+VL I L +D
Sbjct: 123 SQYVVASCLYVECRMAKTSHMLIDFSDVLQINVFKLGSTFLKLCRVLRI-----TLPLLD 177
Query: 175 PSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
PSI++ +F L G ++V A +++ M RDW+ GR+P+G+CGA L ++A +
Sbjct: 178 PSIYIGRFAAMLEFGSETQRVASDATRLVSRMNRDWMQIGRRPAGICGACLLIAARMNNF 237
Query: 234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ S ++V +V + +AT+ KRL EF +T+SG L++ DF
Sbjct: 238 RRSVREVVHVVKVADATIQKRLEEFRDTESGELSVADF 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 24/126 (19%)
Query: 418 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 477
D +D E+D +L + E K +W E+N++YL +Q K L
Sbjct: 407 DFNDEEIDKFLLSSNEVEAKTRVWMELNKDYLADQERKR--------------------L 446
Query: 478 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 537
+A ++L K RK K + + E G A TA+E+ + M+ ++ S KINY+ L
Sbjct: 447 KAEEDLKRGIVRQPRKRRKYKPRDSSTE----GVASTAIESAKEMMQQRTFSKKINYEAL 502
Query: 538 EKLFDD 543
+ LF+D
Sbjct: 503 DHLFND 508
>gi|350634822|gb|EHA23184.1| hypothetical protein ASPNIDRAFT_52343 [Aspergillus niger ATCC 1015]
Length = 745
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 149/267 (55%), Gaps = 15/267 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------S 66
D Q C CG V+ + N +E TF ++++G + + G FV QS YG S
Sbjct: 66 DGQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSHVRSYGPGFQRGGAES 125
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE + + Q+ AL I ES + A + + +AV NF +GRRT+ V A CLY+A
Sbjct: 126 REITEQNGNRYITQLSRALTIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIA 183
Query: 127 CR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F +
Sbjct: 184 CRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQ 243
Query: 186 LLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V
Sbjct: 244 LEFGSATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVV 303
Query: 245 HICEATLMKRLIEFENTDSGSLTIEDF 271
+ E T+ +RL EF +T+SG LT++ F
Sbjct: 304 KVTEITISQRLNEFSSTESGELTVDQF 330
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 413 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 466
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 479 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRAL 532
Query: 467 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 516
A + A V K RK ++ + E ++ S A T
Sbjct: 533 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDGDGRSTRASTPA 580
Query: 517 EATRRMLTKKRLSSKINYDVLEKLFDD 543
EATRRML ++ S KINY +LE LF D
Sbjct: 581 EATRRMLERRGFSKKINYRLLESLFGD 607
>gi|317027053|ref|XP_001400004.2| transcription factor TFIIIB complex subunit Brf1 [Aspergillus niger
CBS 513.88]
Length = 742
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 149/267 (55%), Gaps = 15/267 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------S 66
D Q C CG V+ + N +E TF ++++G + + G FV QS YG S
Sbjct: 73 DGQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSHVRSYGPGFQRGGAES 132
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE + + Q+ AL I ES + A + + +AV NF +GRRT+ V A CLY+A
Sbjct: 133 REITEQNGNRYITQLSRALTIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIA 190
Query: 127 CR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F +
Sbjct: 191 CRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQ 250
Query: 186 LLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V
Sbjct: 251 LEFGSATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVV 310
Query: 245 HICEATLMKRLIEFENTDSGSLTIEDF 271
+ E T+ +RL EF +T+SG LT++ F
Sbjct: 311 KVTEITISQRLNEFSSTESGELTVDQF 337
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 413 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 466
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 486 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRAL 539
Query: 467 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 516
A + A V K RK ++ + E ++ S A T
Sbjct: 540 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDGDGRSTRASTPA 587
Query: 517 EATRRMLTKKRLSSKINYDVLEKLFDD 543
EATRRML ++ S KINY +LE LF D
Sbjct: 588 EATRRMLERRGFSKKINYRLLESLFGD 614
>gi|134056932|emb|CAK44279.1| unnamed protein product [Aspergillus niger]
Length = 752
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 149/267 (55%), Gaps = 15/267 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------S 66
D Q C CG V+ + N +E TF ++++G + + G FV QS YG S
Sbjct: 73 DGQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSHVRSYGPGFQRGGAES 132
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE + + Q+ AL I ES + A + + +AV NF +GRRT+ V A CLY+A
Sbjct: 133 REITEQNGNRYITQLSRALTIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIA 190
Query: 127 CR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F +
Sbjct: 191 CRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQ 250
Query: 186 LLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V
Sbjct: 251 LEFGSATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVV 310
Query: 245 HICEATLMKRLIEFENTDSGSLTIEDF 271
+ E T+ +RL EF +T+SG LT++ F
Sbjct: 311 KVTEITISQRLNEFSSTESGELTVDQF 337
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 413 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 466
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 486 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRAL 539
Query: 467 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 516
A + A V K RK ++ + E ++ S A T
Sbjct: 540 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDGDGRSTRASTPA 587
Query: 517 EATRRMLTKKRLSSKINYDVLEKLFDD 543
EATRRML ++ S KINY +LE LF D
Sbjct: 588 EATRRMLERRGFSKKINYRLLESLFGD 614
>gi|149238860|ref|XP_001525306.1| hypothetical protein LELG_03234 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450799|gb|EDK45055.1| hypothetical protein LELG_03234 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 550
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 153/285 (53%), Gaps = 28/285 (9%)
Query: 4 CSSCARHVTGHRPYD-------SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV 56
C +C GH +D + C RCG VLE++ +E F ++++G + + G V
Sbjct: 10 CVNC-----GHTLFDVNRYTAAGDVSCTRCGTVLEENPIVSEVQFGESSSGAAMVQGAMV 64
Query: 57 RTIQSEYG---------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
Q+ SRE+ + +R++ AL I +D I A ++ +A+
Sbjct: 65 GADQARATFAGGRQNAMESREQTISNGKRKIRRLAAALKI--ADFIADAAGEWFKLALTM 122
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
NF +GRR+ V A+CLY+ACR++ +LIDFS+ L I+VY LGA +L++ + L+I
Sbjct: 123 NFVQGRRSNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS-- 180
Query: 168 NVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DPS+F+ F ++L G KV A + M DWI GR+P+G+ GA + +
Sbjct: 181 --LPLADPSLFIQHFVEKLDFGDKTTKVAKDAVKLAHRMSADWIHEGRRPAGIAGACVLL 238
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+A + + S S+IV I H+ E TL +RL EF+ T + L++E F
Sbjct: 239 AARMNNFRRSHSEIVAISHVGEETLQRRLNEFKKTKAAQLSVESF 283
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 29/137 (21%)
Query: 417 SDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEG 476
SD DD V+ EE K+ IW +N +Y+ EQ K
Sbjct: 431 SDDDDAIVEESQMTPEEVAMKERIWTSLNHDYMIEQERKRLK------------------ 472
Query: 477 LQAAQELAAAAAAAVAKSRKEKQ--------QKRAAEA--KNSGPAQTALEATRRMLTKK 526
Q A EL +A+ R++K QK + G ++A ++T+ L++
Sbjct: 473 -QEADELTGNTSASNGGPRRKKPRNSVPPELQKEIGDIVLDEDGTPRSAADSTKMFLSRT 531
Query: 527 RLSSKINYDVLEKLFDD 543
+S KINY+ L+ LF D
Sbjct: 532 SVSKKINYESLQGLFGD 548
>gi|344230463|gb|EGV62348.1| BRF1-domain-containing protein [Candida tenuis ATCC 10573]
Length = 588
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 156/600 (26%), Positives = 253/600 (42%), Gaps = 126/600 (21%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--------RERLME 72
L C CG V+ ++ +E +F +NA+G + + G V + Q+ S R++ M
Sbjct: 27 LTCSSCGTVVHENPIVSEVSFGENASGGAVVQGTMVGSDQARVPISGRQNAMESRDQTML 86
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+++ + +LNI D I A ++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 87 TGRRNIKDLAASLNI--PDYISDAAHGWFKLALNTNFVQGRRSQNVTAACLYIACRKEKT 144
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-----L 187
LLIDFS+ L I+V+ LGA +L++ + L I L VDPS+F+ F +RL
Sbjct: 145 SHLLIDFSSRLQISVFSLGATFLKMVRTLNITK----LPLVDPSLFISHFAERLNLDREK 200
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
P +V A I M +D I GR+P+G+ GA + ++ +G + S+IV I H+
Sbjct: 201 PNSTNQVISDAIKISFRMAKDSIVEGRRPAGVAGACVMMALRMNGFQKDPSEIVAIAHVS 260
Query: 248 EATLMKR-------------------------------------------------LIEF 258
TL R L+E
Sbjct: 261 SDTLQARMDEFKRTSSGKLRIREFRDKSEQAEAAMPPSYTRNRERSKKDIAAAEGSLVEV 320
Query: 259 ENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSC 318
TDS S T + + E + +P N ++V + D S
Sbjct: 321 SETDSRSATTHLETSADTQPQETDSQYVPQNTDSTVTNSQVTSLNTD-----------SQ 369
Query: 319 YEEFM------TISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKV 372
E++M TISE ++ D P+F V E + FER D + + +
Sbjct: 370 DEDYMESRGEETISE-IKVAKDAPSF-VHEMASLGFNPELLQHDFERYKD--IIEKGYSL 425
Query: 373 QSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEAS----DGSDNFSDIDDFEV---- 424
PEPE ++TA E E D K G+ + S D + +D+DD E+
Sbjct: 426 DYPEPE---PTSDSETADKEEEFDPNKPQGLVKYCKPSSYYLDLVSSSADLDDVELTEAE 482
Query: 425 -DGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 483
+ YL+++E K+ +W MN++YL EQ K L+A +
Sbjct: 483 ENWYLNSDEMAKAKEQLWLSMNKDYLLEQERKR--------------------LKAETDE 522
Query: 484 AAAAAAAVAKSRKEKQQKRAAEAKN-----SGPAQTALEATRRMLTKKRLSSKINYDVLE 538
+ K RK K + +G +T ++ ++M+ +K S KINYD L+
Sbjct: 523 LTGNTSGKKKRRKTKADREKGIIDETLEALTGEPRTPADSVKQMMQRKTFSKKINYDALD 582
>gi|328851991|gb|EGG01140.1| hypothetical protein MELLADRAFT_92647 [Melampsora larici-populina
98AG31]
Length = 649
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 157/287 (54%), Gaps = 26/287 (9%)
Query: 17 YDS---QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------------RTIQS 61
YDS + C CG V++++ ++ TF +++ G + L G + R
Sbjct: 17 YDSAAGNVVCTTCGYVVDENTIVSDVTFGESSNGAAVLQGAQLGATDLRARIVGPRGRPQ 76
Query: 62 EYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQAS 121
SR + +E ++ M + LN+ E I A RF+ +A++ F GRR+ V AS
Sbjct: 77 ASAESRAQTLENGLRNLLSMAHGLNLSEV--IAESAHRFFTLALSNGFVMGRRSPYVLAS 134
Query: 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181
C+Y+ACR P +LID S++L +NV+ +GA YL+L + L + + +DPS+++ +
Sbjct: 135 CIYVACRMNKLPTMLIDISDFLQVNVFIVGATYLKLVKELCLTQ----IPLIDPSLYISR 190
Query: 182 FTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F L G +KV A ++ DWITTGR+PSG+ GA L ++A + K S +I
Sbjct: 191 FAALLEFGEETEKVAYDATRLVKRFDHDWITTGRRPSGIAGACLLIAARMNNFKRSVLEI 250
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 287
V++V I + T+ KRL EF+ +++G +T+EDF R + L E A N P
Sbjct: 251 VQVVKIADVTIKKRLDEFKRSETGKMTVEDF--RNQWLEE--AENPP 293
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 25/128 (19%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D+ SD+D+ E+D ++ NE E K +W E+NREYLE+ A K+ A + Y +
Sbjct: 454 DHLSDLDEDELDCFILNENEVEIKTRVWMELNREYLEKLAEKKEREATGEIKPTKKYASK 513
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 533
P+ AK R +++N G A + +KK+LSSKIN
Sbjct: 514 PK----------------AKPR---------DSENPGGATVGESVMNMINSKKKLSSKIN 548
Query: 534 YDVLEKLF 541
Y + + LF
Sbjct: 549 YKIADSLF 556
>gi|341899796|gb|EGT55731.1| CBN-BRF-1 protein [Caenorhabditis brenneri]
Length = 734
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 148/493 (30%), Positives = 212/493 (43%), Gaps = 92/493 (18%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQ-LSGNFVRTIQSE 62
CS+C C CG VLE+ TE F + A G L G FV
Sbjct: 5 CSNCGSAEIDEDAARGDATCTACGTVLEESIVVTENQFQERAGGSGHTLVGQFV------ 58
Query: 63 YGASRERLMEKAFDDM-----RQMKNALNIGESDEI----------VHVAKRFYGIAVAR 107
S ER F+ M R+M A DE+ ++ A F+ + V+R
Sbjct: 59 ---SAERAAANNFNGMGSQESREMTYAKGRKVVDELGSQLRINAHCMNTAFNFFKMCVSR 115
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
N T+GR V A CLY+ CR ++ LL+DFS+ INV++LG + + L I
Sbjct: 116 NLTRGRNRSSVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRNLNFISRALRIN--- 172
Query: 168 NVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DP +++ +F L G +K V + A ++ MKRDW++TGR+P+G+CGAAL +
Sbjct: 173 --LPSTDPCLYIMRFACVLDFGDRQKEVVNLATRLVQRMKRDWMSTGRRPTGICGAALLI 230
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAA-- 284
+A + S SDIV++VHI E+ + KRL EF T SGSLTI++F E E A
Sbjct: 231 AARSMNFNRSISDIVRVVHISESVIRKRLDEFSQTPSGSLTIDEFSTVDLEHSEDPPAYR 290
Query: 285 ---------NLPNNGPKVSGMNEVLC--------------KHKDTGKPFACGLCRSCYEE 321
L + M + L K K + PFA
Sbjct: 291 EARRKAREEQLRKEAEQADAMRDQLGEMEADVEAALDKKRKEKFSKSPFA---------- 340
Query: 322 FMTISEGLEGGADPPAFQVAERERMVKA---SAEENSSFERESDSPFMSRVDKVQ-SPEP 377
IS GL + AE E MV+ ++ ++ E S M + DK + S E
Sbjct: 341 -KLISGGL-------GLEYAEAEEMVRKDVIASVMKAAEEEPCSSNTMEKFDKYRPSLES 392
Query: 378 ERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYK 437
+ ++ T TA E T+ P +D E I D E+D Y+ E E K
Sbjct: 393 LGIRRSVDTPTA----EHRSTEIPIIDLEDE----------ISDTEIDSYILTESEVAIK 438
Query: 438 KIIWEEMNREYLE 450
W + N E ++
Sbjct: 439 TDYWMKANGEVMK 451
>gi|164660340|ref|XP_001731293.1| hypothetical protein MGL_1476 [Malassezia globosa CBS 7966]
gi|159105193|gb|EDP44079.1| hypothetical protein MGL_1476 [Malassezia globosa CBS 7966]
Length = 660
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 149/278 (53%), Gaps = 31/278 (11%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ------------SEYGA 65
DSQ C CG VLE+ ++ TF +N AG + + G+++ Q S G
Sbjct: 15 DSQAVCSACGVVLEESQIVSDITFAENTAGGAVVQGSYLGADQVRARTSAPGFRGSSAGE 74
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV-----------ARNFTKGRR 114
SRE + A ++ +M A G + A RF+ +A+ RNF GR+
Sbjct: 75 SRECTIANARWNINRMATAR--GVPAHVAERALRFFQLALDGGTATATGSQPRNFVLGRK 132
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
++ ASCLY+ACR +LIDF++ + +NV+ LG YL+L +VL + + +D
Sbjct: 133 SDYTVASCLYVACRMAKTTHMLIDFADVIQVNVFVLGRSYLRLLRVLNLQ-----IPLID 187
Query: 175 PSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
PS ++ +F L G ++V A ++ K DW+ GR+P+G+CGA L ++A +
Sbjct: 188 PSFYISRFAALLEFGDETQRVVTDATRLVTRFKMDWMVEGRRPAGICGACLLLAARMNHF 247
Query: 234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ S ++IV++V I + TL KRL EF+ T SG LTIEDF
Sbjct: 248 RRSITEIVQVVKIADVTLRKRLEEFKATPSGQLTIEDF 285
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 25/115 (21%)
Query: 427 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 486
+L +EE K+ +W E N++YLE AA A + LEA K A
Sbjct: 483 FLLTDEEVKVKERVWMEFNKDYLE-------AALARQLKLEADQK--------------A 521
Query: 487 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
A +SRK + + A P +A E+ ++M+ +KR S +INYDVL LF
Sbjct: 522 GIAPAPRSRKRHKPRDGTTA----PTSSAAESAKQMMQQKRWSRRINYDVLNSLF 572
>gi|157820901|ref|NP_001100231.1| transcription factor IIIB 90 kDa subunit [Rattus norvegicus]
gi|149044025|gb|EDL97407.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae) (predicted),
isoform CRA_a [Rattus norvegicus]
Length = 686
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 167/589 (28%), Positives = 250/589 (42%), Gaps = 129/589 (21%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
C CG VLED+ +E FV+N+ G S G FV S GA + + F
Sbjct: 25 CTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFV----SLDGAGKTPTLGGGFH------ 74
Query: 83 NALNIGESDEIV-------------HVAKRFYGIAVARNFTKGRRTEQVQA------SCL 123
+N+G+ H + G+ A + G A L
Sbjct: 75 --VNLGKESRAQTLQNGILYFILADHGVGQDAGVGAAPHPPPGEPVATEPALPGHSLQLL 132
Query: 124 YLACRQKSKP--------------FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV 169
C+Q S P +L+D S+ L +NVY LG +L L + L I +
Sbjct: 133 QDGCKQASYPRTENGPCDCCLPLLDMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-- 190
Query: 170 LKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
+DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 191 ---IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAA 247
Query: 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA--------------- 273
H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 248 RMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAG 307
Query: 274 ----RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGL 329
R K+L + ++ L ++S + + + +P A G + ++ G
Sbjct: 308 QRKLRMKQLEQVLSKKLEEVEGEISTYQDAIEIELENSRPKAKGALANLSKD----GSGE 363
Query: 330 EGGADPPAFQVAERERMVKASAEENSSFERE-----------SDSPFMSR---VDKVQSP 375
+ + P + E E + A++ N F RE D+ SR ++ + P
Sbjct: 364 DATSSPFCEEDTEDEELEAAASHMNKDFYRELLGADGGSEAAEDADGGSRPLALESLLGP 423
Query: 376 EPERVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNE 431
P TA++ G D + +P D + DG + S IDD E+D Y+ NE
Sbjct: 424 LP----------TAASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRYILNE 473
Query: 432 EEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAV 491
E K +W N EYL EQ KEA A K EL
Sbjct: 474 SEARVKAELWMRENAEYLREQKEKEARIAKEK------------------ELGI------ 509
Query: 492 AKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 510 ---YKEHKPKKSCKRREPILASTAGEAIEKMLEQKKISSKINYSVLRDL 555
>gi|17531397|ref|NP_495526.1| Protein BRF-1 [Caenorhabditis elegans]
gi|351065110|emb|CCD66264.1| Protein BRF-1 [Caenorhabditis elegans]
Length = 759
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 144/285 (50%), Gaps = 31/285 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQ-LSGNFVRTIQSE 62
CS+C C CG VLE+ TE F + A G L G FV
Sbjct: 5 CSNCGSSEIDEDAARGDATCTACGTVLEESIVVTENQFQERAGGSGHTLVGQFV------ 58
Query: 63 YGASRERLMEKAFDDM-----RQMKNALNIGESDEI----------VHVAKRFYGIAVAR 107
S ER F+ M R+M A DE+ ++ A FY + V+R
Sbjct: 59 ---SSERAAANNFNGMGSQESREMTYAKGRKVIDELGSQLRINSHCMNTAFNFYKMCVSR 115
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
N T+GR V A C+Y+ CR ++ LL+DFS+ INV++LG L + L I
Sbjct: 116 NLTRGRNRSSVVAVCMYITCRLENTAHLLLDFSDVTQINVFDLGRNLNYLSRSLRIN--- 172
Query: 168 NVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DP +++ +F L G +K V + A ++ MKRDW++TGR+P+G+CGAAL +
Sbjct: 173 --LPSTDPCLYIMRFACVLDFGDKQKEVVNLATRLVQRMKRDWMSTGRRPTGICGAALLI 230
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+A + S +DIV++VHI E + KRL EF T SGSLTI++F
Sbjct: 231 AARSLNFNRSINDIVRVVHISEGVIRKRLDEFSQTPSGSLTIDEF 275
>gi|449278527|gb|EMC86349.1| Transcription factor IIIB 90 kDa subunit, partial [Columba livia]
Length = 536
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 136/230 (59%), Gaps = 12/230 (5%)
Query: 45 AAGQS-QLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGI 103
AG++ L G F + E SR + ++ + + N L + + + A F+ +
Sbjct: 3 GAGKTPTLGGGFHANLGKE---SRAQTLQNGKRQIHHLGNQLQLNQ--HCLDTAFNFFKM 57
Query: 104 AVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I
Sbjct: 58 AVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCI 117
Query: 164 ADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGA 222
+ +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGA
Sbjct: 118 NAPA-----IDPCLYIPRFAHMLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGA 172
Query: 223 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
AL V+A H + + +++++V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 173 ALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLTEFEDTPTSQLTIDEFM 222
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 64/130 (49%), Gaps = 27/130 (20%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
DG + S IDD E+D Y+ NE E K +W + N +YL+EQ KEA A K
Sbjct: 389 DGELDLSGIDDSEIDRYILNETEAQIKAELWMKENADYLKEQKEKEARIAKEK------- 441
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 530
EL KE + K++A+ + A TA EA +ML +K++SS
Sbjct: 442 -----------ELGIY---------KEHKPKKSAKKREPIQASTAGEAIEKMLEQKKISS 481
Query: 531 KINYDVLEKL 540
KINY+VL L
Sbjct: 482 KINYNVLRDL 491
>gi|326430273|gb|EGD75843.1| hypothetical protein PTSG_07961 [Salpingoeca sp. ATCC 50818]
Length = 543
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 146/262 (55%), Gaps = 26/262 (9%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGN---------FVRT-IQSEYGASRERLME 72
C CG VLED +E T+ ++++ Q G+ F R+ I + R+ +
Sbjct: 21 CTVCGTVLEDSIIVSEVTYTEDSSVVEQYVGSDGQIGGLRGFPRSSIVTAVNTGRQHIEN 80
Query: 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
A R MK LN G D V ++Y +A + FT GR +E V A CLY+ CR++
Sbjct: 81 MA----RNMK--LNQGHIDAAV----KYYRMAAQQKFTAGRPSEHVAACCLYIVCREERS 130
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 192
+L+DF+++L +NVY+L + +L L L I L +DP +FL +F +L G +
Sbjct: 131 MLMLLDFADFLRVNVYKLASTFLSLRLKLSI-----TLPVIDPVLFLPRFVMQLDLGDKQ 185
Query: 193 K-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
+ TA I++ MKRDW+ GR+P+G+CGAAL ++A +G S+ D+V V +C +T+
Sbjct: 186 HDIGRTAIRIVSRMKRDWLHVGRRPAGICGAALLLAARMYGFARSQKDVVHAVRVCSSTV 245
Query: 252 MKRLIEFENTDSGSLTIEDFMA 273
KRL EF T S LT+++FM+
Sbjct: 246 RKRLDEFAETPSARLTMDEFMS 267
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 33/115 (28%)
Query: 427 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 486
++ N+EE K +IW + N++YLE QA K A N P+
Sbjct: 456 HILNDEEVKVKTVIWTQNNQDYLERQARKREEEA-----------NAPK----------- 493
Query: 487 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
K +K + Q R + K+ A A R+ T+++ SSKINYD L+ LF
Sbjct: 494 ------KPKKRRNQPRLPDHKHHRGA-----ARERLKTEEKKSSKINYDSLQSLF 537
>gi|331244858|ref|XP_003335068.1| hypothetical protein PGTG_16675 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309314058|gb|EFP90649.1| hypothetical protein PGTG_16675 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 635
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 149/271 (54%), Gaps = 22/271 (8%)
Query: 17 YDS---QLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------------RTIQS 61
YDS C CG V++++ E TF +++ G + L G+ + R
Sbjct: 17 YDSSAGNAVCTTCGYVVDENTIVAEVTFGESSNGAAVLQGSSLGATDLRARIGGPRGRPQ 76
Query: 62 EYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQAS 121
+ SR + + + M +AL +G D I A RF+ +AV+ F GRR+ V AS
Sbjct: 77 QSAESRAETLAQGMRKLTAMAHALRLG--DSIAESAHRFFTLAVSNGFVMGRRSPYVLAS 134
Query: 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181
C+Y+ACR P +LID S+ L +NV+ +GA YL+L + L + + + VDPS+++ +
Sbjct: 135 CIYVACRLAKLPTMLIDISDLLQVNVFIVGATYLKLVKELCLQN----IPLVDPSLYISR 190
Query: 182 FTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F L G + +KV A ++ DW+T GR+P+G+ GA+L ++A +G + S +I
Sbjct: 191 FASLLEFGEDTQKVAYDAARLVKRFDTDWMTAGRRPAGIAGASLLIAARMNGFRRSVLEI 250
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
V++V + + T+ KRL EF T SG +T+E+F
Sbjct: 251 VQVVKMADVTIKKRLEEFRVTASGKMTVEEF 281
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 30/117 (25%)
Query: 427 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 486
++ N++E K +W E+NREYLE+ A K+ A + + Y
Sbjct: 454 FILNDKEVEMKTRVWMELNREYLEKVALKKEREANGELKVAKKYN--------------- 498
Query: 487 AAAAVAKSRKEKQQKRAAEAKNSGPAQ-TALEATRRML-TKKRLSSKINYDVLEKLF 541
+ K + R +E PA T E+ + M+ +KK+LSSKINY + + LF
Sbjct: 499 ---------RTKSKPRDSE----NPAGLTVEESVKNMINSKKKLSSKINYAIADSLF 542
>gi|160333889|ref|NP_001037055.1| TFIIB-related factor [Bombyx mori]
gi|22417141|gb|AAM96688.1| TFIIB-related Factor [Bombyx mori]
Length = 661
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 147/283 (51%), Gaps = 21/283 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------- 56
C C P C CG VLED+ +E F +NA G + G FV
Sbjct: 6 CKHCGSSEIEVDPARGDAVCTSCGTVLEDNIIVSEVEFQENAHGGASAIGQFVSADTKGG 65
Query: 57 -----RTIQSEYGA-SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
R + G S+E + KA + + L + + + + +A FY +A++R+ T
Sbjct: 66 ATGFGRAFNAGIGQESKEITLRKARIGITALCQQLRLNQ--QCIDIACNFYKMALSRHLT 123
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
GR QA+C+Y+ CR + P LLID S+ + + Y+LG Y +L + L I +
Sbjct: 124 IGRPVTHTQAACVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCIN-----I 178
Query: 171 KQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
DP +++ +F +L +V TA ++ MK+D I +GR+PSG+CGAAL ++A
Sbjct: 179 PPTDPCLYILRFASQLKFEDKQHEVSMTALRLVQRMKKDSIHSGRRPSGICGAALLIAAR 238
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
H + SDIV+IV + E+TL KR+ EF +T S +LT+E+FM
Sbjct: 239 LHEFSRTPSDIVRIVKVHESTLRKRMFEFGDTPSSALTLEEFM 281
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 29/126 (23%)
Query: 416 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 475
S D+ +D + + +E +K +W ++N YL+EQ K
Sbjct: 445 MSQRDEEYIDSLIMSADEAKHKTKLWNKVNAGYLKEQKIK-------------------- 484
Query: 476 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSG-PAQTALEATRRMLTKKRLSSKINY 534
QE+ A + +++ +K++ R + K A TA EA +ML +K++SSKINY
Sbjct: 485 -----QEI---KAKELEENKDKKKKVRGSYRKKVAINAATAGEAIEKMLAEKKMSSKINY 536
Query: 535 DVLEKL 540
D+L+ L
Sbjct: 537 DILKSL 542
>gi|413946298|gb|AFW78947.1| hypothetical protein ZEAMMB73_193949 [Zea mays]
Length = 216
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 103/136 (75%), Gaps = 9/136 (6%)
Query: 212 TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
T RKPSGLCGAALY++AL+HG ++K+DIV +VH+CEATL KRLIEFENTDSGSLTIE+F
Sbjct: 4 TRRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIEFENTDSGSLTIEEF 63
Query: 272 MARKKELH-EGVAANLPNNGPKVSGMNEVLCKHKDTG-KPFACGLCRSCYEEFMTISEGL 329
+A E + E V+ + P +G E++CKHKD G + FA GLC CY +F +S GL
Sbjct: 64 LATADESNEEPVSKHSPKSG-------EIICKHKDKGFEHFAHGLCEKCYNKFTKLSGGL 116
Query: 330 EGGADPPAFQVAERER 345
EGG+ PPAFQ AE++R
Sbjct: 117 EGGSVPPAFQRAEKKR 132
>gi|354473188|ref|XP_003498818.1| PREDICTED: hypothetical protein LOC100753600 [Cricetulus griseus]
Length = 1450
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 130/223 (58%), Gaps = 11/223 (4%)
Query: 51 LSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
L G F + E SR + ++ + + + L + + + A F+ +AV+++ T
Sbjct: 843 LGGGFHVNLGKE---SRAQTLQNGRRHIHHLGSQLQL--NQHCLDTAFNFFKMAVSKHLT 897
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I
Sbjct: 898 RGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCIN-----A 952
Query: 171 KQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
+DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 953 PAIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAAR 1012
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 1013 MHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFM 1055
>gi|401881866|gb|EJT46148.1| transcription factor iiib 70 kd subunit [Trichosporon asahii var.
asahii CBS 2479]
gi|406701129|gb|EKD04282.1| transcription factor iiib 70 kd subunit [Trichosporon asahii var.
asahii CBS 8904]
Length = 673
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 141/258 (54%), Gaps = 10/258 (3%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR----TIQSEYGASRERLMEKAFD 76
+ C CG +E +E F + A G+ + G FV I S G S E + E+
Sbjct: 23 VVCQDCGIEVEQGILVSEIGFSEGAGGRVHVQGTFVSHNSTGINSNRGVSSENIKEEGRK 82
Query: 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 136
++ + N + I S + A+RFY +AV F +GRRT+ V ASC+YL R + +L
Sbjct: 83 RIQLICNQMGIAPS--VQRGAQRFYSLAVDNKFNRGRRTDFVVASCIYLYSRFEKDALML 140
Query: 137 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVC 195
IDFS L INVYELGA YL+L L + +L ++DP+++ +F +RL G + V
Sbjct: 141 IDFSERLQINVYELGATYLKLRSCLNL---DQILPEIDPAVYNIRFANRLDFGAASATVA 197
Query: 196 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 255
A ++ K DW+T GR+P+G+CGA L ++A + ++ ++V + T+ KRL
Sbjct: 198 RDASRLIKRFKADWMTAGRRPAGICGACLVIAARMSDFLRTPEEVAQVVKVSPLTIKKRL 257
Query: 256 IEFENTDSGSLTIEDFMA 273
+EF T + + T+E++ A
Sbjct: 258 VEFAGTAAANKTVEEWRA 275
>gi|291000995|ref|XP_002683064.1| transcription factor [Naegleria gruberi]
gi|284096693|gb|EFC50320.1| transcription factor [Naegleria gruberi]
Length = 654
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 144/525 (27%), Positives = 227/525 (43%), Gaps = 100/525 (19%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDH---------NFSTEATFVKN-------- 44
+WCS+C HV + + L C CG+ L H N + FV +
Sbjct: 4 IWCSTCKAHVNPEQTTEG-LYCGECGEELGSHFEETVEFNENHTMVGRFVSSERAMASAA 62
Query: 45 --AAGQSQLS----GNFVRTIQSEYGASRERLM-EKAFDDMRQMKN-----ALNIGESDE 92
AG Q S GN + T + E+ M E + + K AL + +
Sbjct: 63 TALAGVPQFSYDENGNLIFTSAVPQAGNTEKPMTESRLQTIEKAKRRISVIALLMKIPNH 122
Query: 93 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 152
V A Y +A+ + TK R + V A+CLY RQ +P++L+DFS + +V+ +G
Sbjct: 123 YVDRATNTYKLALLKGSTKARNPDIVAAACLYFVLRQDKQPYMLMDFSESMKTDVFLIGH 182
Query: 153 VYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK---------KVCDTARDILA 203
+L L L L V+P ++ +F +RLL K +V T ++A
Sbjct: 183 CFLDLMTALNFK-----LPAVEPFFYVRRFANRLLLNSGKENANQEAINRVIQTTLKLIA 237
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEFENTD 262
SMKR+WI TGR+P+G+C AAL V+A HG K SK D+VK+V IC ATL KRL+EF+ T+
Sbjct: 238 SMKRNWIQTGRRPAGICAAALLVAARIHGFKNISKQDVVKVVKICTATLTKRLMEFDKTE 297
Query: 263 SGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLC----RSC 318
+ L+ E+F R++E+ NNG + D P A
Sbjct: 298 TAQLSPEEFERREQEI---------NNGSFQGTI--------DVSDPPAYSRSLKEKSKL 340
Query: 319 YEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPE 378
E + + LE G D V E E++++ E S E E ++R ++Q + +
Sbjct: 341 MERYEPEQKDLERGTDVNDQDVEEAEKLIQDKEIEEISTELEKGDQ-LARAQRLQESQSK 399
Query: 379 RVPKNCT--------------TQTASNEGEGD----------HTKTPGVDATTEASDGSD 414
+P TQ S+E E D H+K + T + + +
Sbjct: 400 PIPDTTLPSSSLPSASQDVRQTQIKSSEFEDDESISYEESNNHSKISIENQTEQQNQIEE 459
Query: 415 NFSD----IDDFEVDGYLHNEEEKHY-----KKIIWEEMNREYLE 450
+ + + DFE D + ++ +W+E++ EYL+
Sbjct: 460 DEEEEIDTLSDFEDDSEIEEIVITEESEIEGREKLWDELHLEYLQ 504
>gi|71003944|ref|XP_756638.1| hypothetical protein UM00491.1 [Ustilago maydis 521]
gi|46095578|gb|EAK80811.1| hypothetical protein UM00491.1 [Ustilago maydis 521]
Length = 765
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 158/293 (53%), Gaps = 34/293 (11%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C++C + D+Q C +CG VLE+ ++ TF +N+AG + + G+ + Q+
Sbjct: 3 CTNCGSSAIDY--ADNQAVCSQCGVVLEESQIVSDITFGENSAGGAVVQGSMIAGDQARA 60
Query: 63 ------------YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV----- 105
SR+ + A + M +AL I + A RF+ +A+
Sbjct: 61 RVSGPGGFRGGYVSESRDMTISNARTGINNMASALRI--PSHVADRALRFFTLALDGGAS 118
Query: 106 ------ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
+N+ GR++E ASCLY+ACR + +LIDF++ + +NV+ LG YL+L +
Sbjct: 119 AATGEEPKNYVLGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNVFILGRSYLKLIR 178
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 218
VL + L +DPSI++ +F L G +KV A +++ ++DWIT GR+P+G
Sbjct: 179 VLNLR-----LPLIDPSIYIARFAALLDFGEETQKVAYDASRLVSRFQKDWITEGRRPAG 233
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+CGA L ++A + + S S+++++V I + TL RL EF+ T +G L+++DF
Sbjct: 234 ICGACLMLAARMNHFRRSVSEVIQVVKIADVTLKARLEEFKKTPTGQLSVQDF 286
>gi|426248972|ref|XP_004018226.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Ovis aries]
Length = 798
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 114/174 (65%), Gaps = 6/174 (3%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
F+ +AV+++ T+GRRT V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 256 FFKMAVSKHLTRGRRTAHVVAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 315
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 218
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 316 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 370
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 371 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 424
>gi|167516968|ref|XP_001742825.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779449|gb|EDQ93063.1| predicted protein [Monosiga brevicollis MX1]
Length = 285
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 141/274 (51%), Gaps = 13/274 (4%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQL-----SGNFVRT 58
C SC C CG ++ED+ +E TF ++ + G F
Sbjct: 5 CHSCGSSSVEEDESRGTTTCTVCGAIIEDNLIVSEVTFTEDRGVVERFVDADGRGAFNSG 64
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
Y SR+ + ++Q+ N + + + +A +Y AV FT+GR E V
Sbjct: 65 AYGGYRDSRQTTIANGRALIQQLANKMQMNSHH--IDMAVNYYKQAVEHRFTQGRPKEHV 122
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+CLY+ CRQ+ +L+DFS+ L +NVY+L A Y+QLC L + L VDP ++
Sbjct: 123 VAACLYIVCRQQKTSHMLLDFSDQLRVNVYKLAATYMQLCNKLLTS-----LPVVDPVLY 177
Query: 179 LHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+ +F + G +V TA I++ MKRDWI GR+PSG+CGAAL ++A HG + +
Sbjct: 178 IPRFAHHMRFGELTHEVSKTALRIVSRMKRDWIHVGRRPSGVCGAALLLAARMHGFQRNL 237
Query: 238 SDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
D+ + VH+ T+ RL +F NT+S LT E F
Sbjct: 238 QDVQQAVHVGIQTVRARLEDFGNTESSKLTPEQF 271
>gi|440493061|gb|ELQ75570.1| Transcription initiation factor TFIIIB, Brf1 subunit, partial
[Trachipleistophora hominis]
Length = 429
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 146/270 (54%), Gaps = 8/270 (2%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C +C S +CC +CG + E+ ++ F +N G SQL+G FVR +
Sbjct: 23 CKTCGSTDIDDGHSTSNICCRKCGTLNEELFITSSLNFTENN-GSSQLNGQFVRITDTYA 81
Query: 64 GASRERLMEKAFDDMRQMKNAL-NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASC 122
+ Q+KN ++G SDE+ A R+Y +++ N T+GR ++C
Sbjct: 82 KVGGNIIRTTNLQIQNQIKNICGSLGLSDEVAQSAYRWYKLSLQGNLTRGRNILYTLSAC 141
Query: 123 LYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF 182
+Y+ CRQ+ P LLIDF+ L+++V+++G +++++ L + + +DPS+FLH+F
Sbjct: 142 IYIVCRQEKTPHLLIDFAQLLDLDVFKIGNIFMRIVVFLNVK-----VPLIDPSLFLHRF 196
Query: 183 TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 242
+ L N K+ A +++ MKRDWI GR+P+ LCGAAL ++ + + S ++ K
Sbjct: 197 FSK-LKLKNGKILLFAMRLISRMKRDWIVVGRRPNNLCGAALVTASRVYAEERSVLEVAK 255
Query: 243 IVHICEATLMKRLIEFENTDSGSLTIEDFM 272
V + T+ RL E +T S +LT+ DF
Sbjct: 256 AVKVSPHTINIRLKEMCDTQSANLTVNDFF 285
>gi|395504300|ref|XP_003756493.1| PREDICTED: transcription factor IIIB 90 kDa subunit, partial
[Sarcophilus harrisii]
Length = 619
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 127/208 (61%), Gaps = 8/208 (3%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SR + ++ + + N L + + + A F+ +AV+++ T+GR+ V A+CLYL
Sbjct: 19 SRAQTLQNGKRQIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYL 76
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F
Sbjct: 77 VCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHM 131
Query: 186 LLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++++V
Sbjct: 132 LEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIRVV 191
Query: 245 HICEATLMKRLIEFENTDSGSLTIEDFM 272
+CE+TL KRL EFE+T + LTI++FM
Sbjct: 192 KVCESTLRKRLTEFEDTPTSQLTIDEFM 219
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 27/132 (20%)
Query: 409 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 468
+ DG + + IDD E+D Y+ NE E K +W + + +Y++EQ KEA A K
Sbjct: 384 SGDGELDLNGIDDSEIDRYILNENEAQIKAELWMKEHADYVKEQKEKEARIAKEK----- 438
Query: 469 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 528
EL KE + K++++ + A TA EA +ML +K++
Sbjct: 439 -------------ELGIY---------KEHKPKKSSKKREPIQASTAGEAIEKMLEQKKI 476
Query: 529 SSKINYDVLEKL 540
SSKINY+VL L
Sbjct: 477 SSKINYNVLRDL 488
>gi|406860061|gb|EKD13121.1| Brf1-like TBP-binding domain-containing protein [Marssonina brunnea
f. sp. 'multigermtubi' MB_m1]
Length = 964
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 148/272 (54%), Gaps = 17/272 (6%)
Query: 14 HRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEY--- 63
H P C CG V++D N +E TF +N+AG + + G+FV RTI +
Sbjct: 56 HDPDIQDGICHNCGFVVDDSNIVSEITFGENSAGGAVVQGSFVSADQGGARTIGPGFKRG 115
Query: 64 -GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASC 122
G +RE + + + ++ M L I ES + + + +A NF +GRR EQV A C
Sbjct: 116 GGDNRENTLREGRNAIQGMGAQLGIRES--TIQNGVQIFKLAAMNNFIQGRRMEQVAAVC 173
Query: 123 LYLACRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181
LY ACR+ S +LIDF++ + NV++LG + +L + IA ++ V P + +
Sbjct: 174 LYSACRKDSPCRIMLIDFADLVQTNVFKLGYTFKKLHDTIAIAKAG--IQPVLPEDLIFR 231
Query: 182 FTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F +L G KV + A ++ M DW+ GR+PSG+CGA L ++A + + + +++
Sbjct: 232 FAQKLEFGNQMTKVAEDAVRMVQRMSLDWMVMGRRPSGVCGACLILAARMNNFRRTITEV 291
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
V IV + T+ KRL EF+ T S +LT+EDF+
Sbjct: 292 VYIVKVTTHTIQKRLEEFKQTPSSALTVEDFL 323
>gi|328770639|gb|EGF80680.1| hypothetical protein BATDEDRAFT_24490 [Batrachochytrium
dendrobatidis JAM81]
Length = 491
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 157/266 (59%), Gaps = 18/266 (6%)
Query: 20 QLCCDRCGKVLEDHNFSTEATFVKNAAGQS-----QLSGNFVRT--------IQSEYGAS 66
+ C CG VLE++ +E TF + + G + QLS R I++ S
Sbjct: 22 HIVCLECGAVLEENTIVSEVTFSETSKGSAIADGFQLSTGQARASNRGTFGLIRTGGQES 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE+ ++ ++++ N I ++ +V A+RF+ +AV NFTKGR++ V A+CLY+
Sbjct: 82 REQTLQNGHRRIQEVANQPQIRMNERLVGHARRFFNVAVVNNFTKGRKSGNVVAACLYIV 141
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + +LIDF++ L+ NVY++GA +L LC++ + + + VDPS+++ +F +L
Sbjct: 142 CRLEKTAHMLIDFADALSTNVYQVGATFLALCKISGV----DKMPLVDPSLYISRFAAKL 197
Query: 187 LPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G + + + A ++ M RDW+ TGR+P+G+C A+L+V++ H + +I+ +V
Sbjct: 198 DFGEDTQNIVKDANRLVQRMCRDWMQTGRRPAGICAASLFVASRMHNHNRTIREIILVVK 257
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDF 271
ICEATL +RL EF T S +L+++DF
Sbjct: 258 ICEATLRRRLREFRETPSSNLSVQDF 283
Score = 45.1 bits (105), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 31/114 (27%)
Query: 432 EEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAV 491
EE +K+ IW E N+E++ Q AK AA +
Sbjct: 397 EEVEFKEAIWTEENKEWILRQQAK-----------------------------AALGIGL 427
Query: 492 AKSRKEKQQKRAAEAKNSGPAQTALEATRRM-LTKKRLSSKINYDVLEKLFDDS 544
A+S K K +KR + S A TA EA + + ++K LS KINY VLE LF+ +
Sbjct: 428 AESEKRKPKKRPRVIR-SYEAPTAAEAAKNLVMSKPTLSKKINYGVLETLFEKT 480
>gi|388852063|emb|CCF54239.1| related to BRF1-TFIIIB subunit, 70 kD [Ustilago hordei]
Length = 760
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 157/293 (53%), Gaps = 34/293 (11%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C++C + ++Q C +CG VLE+ ++ TF +N+AG + + G+ + Q+
Sbjct: 3 CTNCGSSAIDY--ANNQAVCSQCGVVLEESQIVSDITFGENSAGGAVIQGSMISADQARA 60
Query: 63 ------------YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV----- 105
SRE + A + M +AL I A RF+ +A+
Sbjct: 61 RVSGPGGFRGGYVSESREMTISNARIGINNMASALRI--PSHAADRALRFFTLALDGGAS 118
Query: 106 ------ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
+N+ GR++E ASCLY+ACR + +LIDF++ + +NV+ LG YL+L +
Sbjct: 119 AATGDEPKNYVLGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNVFILGRSYLKLIR 178
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 218
VL + L +DPSI++ +F L G +KV A +++ ++DWIT GR+P+G
Sbjct: 179 VLNLR-----LPLIDPSIYIARFAALLDFGEETQKVAYDASRLVSRFQKDWITEGRRPAG 233
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+CGA L ++A + + S S+I+++V I + TL RL EF+ T +G L+++DF
Sbjct: 234 ICGACLMLAARMNHFRRSVSEIIQVVKIADVTLKARLEEFKKTPTGQLSVQDF 286
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 22/128 (17%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D+ +D+D+ E+D ++ + EE K+ +W E N++++E+ K+
Sbjct: 498 DDLADLDEEELDRFILSPEEVKIKERVWMEFNKDWMEQTLKKQLK--------------- 542
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 533
L+ Q++ + + K K+ K +A + +A E+ + ML +K+ S KIN
Sbjct: 543 ---LEHDQKM----GVPIREPYKRKKPKAPRDASTAMHNTSAAESAKMMLKQKQFSKKIN 595
Query: 534 YDVLEKLF 541
YD L LF
Sbjct: 596 YDALNNLF 603
>gi|121706010|ref|XP_001271268.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus clavatus NRRL 1]
gi|119399414|gb|EAW09842.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus clavatus NRRL 1]
Length = 755
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 147/268 (54%), Gaps = 16/268 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D C CG V+ + N +E TF + ++G + + G FV Q+ YG
Sbjct: 74 DGHKVCSGCGTVISEANIVSEVTFGETSSGAAVVQGAFVGEDQTHVRSYGPGFQRGGAME 133
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+
Sbjct: 134 SREITEQNGNRYINQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 191
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L +NV++LG Y L L + ++ +DP +++F
Sbjct: 192 ACRRQDGNTVMLIDFADVLMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAK 251
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 252 QLEFGTATMQVASEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYV 311
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDF 271
V + E T+ +RL EF +T+S LT++ F
Sbjct: 312 VKVTEITINQRLNEFSSTESAELTVDQF 339
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 421 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 480
D EV L + E K+ IW N+EYL Q AK A A+A + G++
Sbjct: 506 DPEVADCLLSPAEVEIKERIWVHENKEYLRIQQAKALKRALAEAESQP-------GMRKP 558
Query: 481 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
++ V + + + S PA EATRRML ++ S KINY +LE L
Sbjct: 559 RKRRKGRLGDVTYLEGDGEDADGRSTRASTPA----EATRRMLERRGFSKKINYRLLESL 614
Query: 541 FDD 543
F D
Sbjct: 615 FGD 617
>gi|303317508|ref|XP_003068756.1| Transcription factor TFIIB repeat containing protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240108437|gb|EER26611.1| Transcription factor TFIIB repeat containing protein [Coccidioides
posadasii C735 delta SOWgp]
gi|320038733|gb|EFW20668.1| transcription factor tfiiib complex subunit brf1 [Coccidioides
posadasii str. Silveira]
Length = 805
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 149/268 (55%), Gaps = 16/268 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS---------EYGA--- 65
D Q C CG V+ + N +E TF ++++G + + G F+ QS + G
Sbjct: 64 DGQKVCSGCGTVISEANIVSEITFGESSSGAAVVQGTFIGADQSHGRSTGPGFQRGGGVE 123
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 124 SREITEQNGNRYIAQLSRALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAICLYV 181
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 182 ACRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNIFIMNPIDPESLIYRFAK 241
Query: 185 RLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 242 QLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYV 301
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDF 271
V + E T+ +RL EF+ T+SG LT++ F
Sbjct: 302 VKVTELTIHQRLNEFKATESGDLTVDQF 329
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 29/133 (21%)
Query: 421 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 480
D EV L + E K+ IW N++YL Q AK A K AL A+
Sbjct: 516 DPEVRYCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRALTAA----------- 559
Query: 481 QELAAAAAAAVAKSRKEKQQKRA------AEA----KNSGPAQTALEATRRMLTKKRLSS 530
+A+ A K RK ++ + E + S A T EATR ML ++ S
Sbjct: 560 ---DPSASGAGHKPRKRRKGRMGDVTYLTGEGGDGDRASSRASTPAEATRLMLERRGFSK 616
Query: 531 KINYDVLEKLFDD 543
KINY +LEK+++D
Sbjct: 617 KINYSLLEKMYED 629
>gi|119186801|ref|XP_001244007.1| hypothetical protein CIMG_03448 [Coccidioides immitis RS]
gi|392870729|gb|EAS32553.2| transcription factor TFIIIB complex subunit brf1 [Coccidioides
immitis RS]
Length = 804
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 149/268 (55%), Gaps = 16/268 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS---------EYGA--- 65
D Q C CG V+ + N +E TF ++++G + + G F+ QS + G
Sbjct: 64 DGQKVCSGCGTVISEANIVSEITFGESSSGAAVVQGTFIGADQSHGRSTGPGFQRGGGVE 123
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 124 SREITEQNGNRYIAQLSRALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAICLYV 181
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 182 ACRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNIFIMNPIDPESLIYRFAK 241
Query: 185 RLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 242 QLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYV 301
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDF 271
V + E T+ +RL EF+ T+SG LT++ F
Sbjct: 302 VKVTELTIHQRLNEFKATESGDLTVDQF 329
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 29/133 (21%)
Query: 421 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 480
D EV L + E K+ IW N++YL Q AK A K AL A+
Sbjct: 517 DPEVRYCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRALTAA----------- 560
Query: 481 QELAAAAAAAVAKSRKEKQQKRA------AEA----KNSGPAQTALEATRRMLTKKRLSS 530
+A+ A K RK ++ + E + S A T EATR ML ++ S
Sbjct: 561 ---DPSASGAGHKPRKRRKGRMGDVTYLTGEGGDGDRASSRASTPAEATRLMLERRGFSK 617
Query: 531 KINYDVLEKLFDD 543
KINY +LEK+++D
Sbjct: 618 KINYSLLEKMYED 630
>gi|239607291|gb|EEQ84278.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
dermatitidis ER-3]
Length = 818
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 148/268 (55%), Gaps = 16/268 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D C CG V+ + N +E TF ++A+G + + G FV QS +G
Sbjct: 66 DGMKVCSGCGTVVSEANIVSEITFGESASGAAIVQGTFVGAGQSHGRSFGPGFQRGGGME 125
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 126 SREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 183
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 184 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAK 243
Query: 185 RLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 244 QLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYV 303
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDF 271
V + E T+ +RL EF+ T+SG LT++ F
Sbjct: 304 VKVTELTIHQRLNEFKATESGDLTVDQF 331
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 418 DID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 471
DID D EV L + E K+ IW N++YL Q AK A A+ E
Sbjct: 487 DIDASEFDSDPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAE---EEDLI 543
Query: 472 N--CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 529
N P + ++ V + + + + + A T EATRRML K+ S
Sbjct: 544 NGRVPGITRRPRKRRKGRMGDVGYLEGKGENGEDVDGRGTR-ASTPAEATRRMLEKRGFS 602
Query: 530 SKINYDVLEKLFDD 543
KINY +LE++++D
Sbjct: 603 KKINYRLLEEMYED 616
>gi|431839340|gb|ELK01267.1| Transcription factor IIIB 90 kDa subunit [Pteropus alecto]
Length = 823
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 130/223 (58%), Gaps = 11/223 (4%)
Query: 51 LSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
L G F + E SR + ++ + + + L + + + A F+ +AV++ T
Sbjct: 214 LGGGFHVNLGKE---SRAQTLQNGRRQIHHLGSQLQLNQ--HCLDTAFNFFKMAVSKRLT 268
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I +
Sbjct: 269 RGRKMAHVVAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA--- 325
Query: 171 KQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
+DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 326 --IDPCLYIPRFAHLLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAAR 383
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 384 MHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 426
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 404 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 463
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 583 DPKDASGDGELDLSGIDDLEIDRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK 642
Query: 464 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 523
EL KE + K++ + + A TA EA +ML
Sbjct: 643 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKML 675
Query: 524 TKKRLSSKINYDVLEKL 540
+KRLSSKI+Y VL L
Sbjct: 676 EQKRLSSKIDYSVLRGL 692
>gi|299117182|emb|CBN75146.1| similar to TFIIB related factor hBRF [Ectocarpus siliculosus]
Length = 990
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 146/282 (51%), Gaps = 18/282 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C SC +P C CG V++++N + F + G S + G FV +
Sbjct: 23 CPSCGGTNFIDQPGSGDRACAECGTVVQENNIVSTVQF-SESGGSSNVVGQFVSGDRGRP 81
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEIVHV-------------AKRFYGIAVARNFT 110
F R ++A +I+ V A R + + V +N+
Sbjct: 82 SGGGAARGRGRFGQSRDSRDATIQNGKKKIIQVLAQLHLRTTLADEAARLFALCVTQNYV 141
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
+GR+T + A+C+Y+ CRQ P +LID S+ L +NVY LG + +L + L + + +
Sbjct: 142 QGRKTMNIVAACVYIVCRQNHFPIMLIDISDKLAVNVYVLGKTFQKLIKHLNLQTQVPI- 200
Query: 171 KQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229
VDP++++ +F +L L VC TA I+ SMKRD++ +GR+P+G+C AAL ++
Sbjct: 201 --VDPAMYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQPAGICCAALTLATR 258
Query: 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ ++ SK +I K V +C+AT+ KRL+EFE T + LT+E+
Sbjct: 259 VNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEEL 300
>gi|323508031|emb|CBQ67902.1| related to BRF1-TFIIIB subunit, 70 kD [Sporisorium reilianum SRZ2]
Length = 775
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 160/297 (53%), Gaps = 42/297 (14%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C++C + D+Q C +CG VLE+ ++ TF +N+AG + + G+ + Q+
Sbjct: 3 CTNCGSSAIDY--ADNQAVCSQCGVVLEESQIVSDITFGENSAGGAVVQGSMIAADQARA 60
Query: 63 ------------YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR---FYGIAV-- 105
SRE + A + M +AL I HVA R F+ +A+
Sbjct: 61 RVSGPGGFRGGYVSESREMTISNARIGINNMASALRIPS-----HVADRSLRFFTLALDG 115
Query: 106 ---------ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 156
+N+ GR++E ASCLY+ACR + +LIDF++ + +NV+ LG YL+
Sbjct: 116 GASAATGDEPKNYVLGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNVFILGRSYLK 175
Query: 157 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG--NKKVCDTARDILASMKRDWITTGR 214
L +VL + L +DPSI++ +F LL G +KV A +++ ++DW+T GR
Sbjct: 176 LIRVLNLR-----LPLIDPSIYIARFA-ALLDFGEETQKVAYDASRLVSRFQKDWLTEGR 229
Query: 215 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+P+G+CGA L ++A + + S S+++++V I + TL RL +F+ T +G L+++DF
Sbjct: 230 RPAGICGACLMLAARMNHFRRSVSEVIQVVKIADVTLKARLEDFKKTPTGQLSVQDF 286
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 22/128 (17%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D+ +D+D+ E+D ++ + EE K+ +W E N++++E+ K+
Sbjct: 504 DDLADLDEEELDRFILSPEEVKIKERVWMEFNKDWMEQMLKKQLK--------------- 548
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 533
L+ Q++ + + K K+ K +A + +A E+ + ML +K+ S KIN
Sbjct: 549 ---LEHDQKM----GVPIREPYKRKKPKAPRDASTAMHNTSAAESAKMMLKQKQFSKKIN 601
Query: 534 YDVLEKLF 541
YD L LF
Sbjct: 602 YDALNNLF 609
>gi|449668786|ref|XP_002161156.2| PREDICTED: transcription factor IIIB 70 kDa subunit-like [Hydra
magnipapillata]
Length = 943
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 161/583 (27%), Positives = 255/583 (43%), Gaps = 81/583 (13%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT--- 58
+ C +C + P C CG V+E + F +N+AG S + G FV +
Sbjct: 276 ISCKNCGGIEIDNDPARGDSVCVSCGSVVESLCIVNDIEFHENSAGSSSVIGQFVSSEGQ 335
Query: 59 ----IQSEYGASRERLMEKAFDDMRQMKNAL--NIGESDEIVHVAKRFYGIAVARNFTKG 112
S++G ++ + A ++ +Q+ N I S + A F+ +A ++ FT G
Sbjct: 336 NRVGSYSKFGVGQDH-RQVALENGKQLINNYGGQIKMSHHCLDSAYMFFKMAASKRFTVG 394
Query: 113 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ 172
R+T V +CLYL R + P +L+D + + ++ LG V+L L + L I
Sbjct: 395 RKTIYVVGACLYLVSRTEKTPHMLLDICDAIQCDIVVLGRVFLALARTLCID-----CPI 449
Query: 173 VDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 231
VDPS+++H+F +L G + +V A ILA MK+DWI GR+PS LCGAAL ++
Sbjct: 450 VDPSLYIHRFAHQLDFGDKENEVSMAALRILARMKKDWIHLGRRPSALCGAALIIAGKLF 509
Query: 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGP 291
+ DIVK+V + + T+ KRL++F T +G LT ++F ++ +L E G
Sbjct: 510 NFNVTMDDIVKLVRMSKTTVFKRLMDFSKTATGKLTTDEF--KRVDLEEEADPPCYTYGK 567
Query: 292 K-VSGMNEVLCKHKDTGKPFACGLCRS------CYEEFMTISEGLEGG-ADPPAF----Q 339
K + E+ KH + ++ E+ I+ +E + AF Q
Sbjct: 568 KRIQFAQEIDKKHNFVSSYLLSQVVKTQRRLEVLLEKRHNINSEIEKVLPESKAFVYQKQ 627
Query: 340 VAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTK 399
+ + K +E F+ P V EP+ + K ASN D
Sbjct: 628 LPSYCSLHKYELDEKGEFK----VPHF-----VIHEEPDDILKEEVKTVASNTLLLDQCV 678
Query: 400 TPGVDATTEASD-------GSDNFSDIDDFEVD----------GYLHNEEEKHYKKIIWE 442
T D +T++ + N DI+ E+D L E+E K IW
Sbjct: 679 TKVEDMSTKSGECNLVSAKSEKNIGDINCDEIDLEGIDDEEIEELLLTEDEIKIKTEIWL 738
Query: 443 EMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKR 502
E N+EYL++ KE E L+ +E K ++K + R
Sbjct: 739 EENKEYLQKMKEKE------------------EDLRMKEEEENKLGNKKKKKARKKPRDR 780
Query: 503 AAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSV 545
A TA EA + ML +K++SSKINYDVL L ++V
Sbjct: 781 PI-------AGTADEAIQTMLAEKKISSKINYDVLRGLKSETV 816
>gi|258563476|ref|XP_002582483.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907990|gb|EEP82391.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 791
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 149/268 (55%), Gaps = 16/268 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS---------EYGA--- 65
D Q C CG V+ + N +E TF ++++G + + G F+ QS + G
Sbjct: 64 DGQKVCSGCGTVISEANIVSEITFGESSSGAAIVQGTFIGADQSHGRSTGPGFQRGGGVE 123
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 124 SREITEQNGNRYIAQLSRALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAICLYV 181
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 182 ACRRQDGNTVMLIDFADVLMINVFKLGRTYKALLDELRLGGNIFIMNPIDPESLIYRFAK 241
Query: 185 RLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 242 QLEFGPSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYV 301
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDF 271
V + E T+ +RL EF+ T+SG LT++ F
Sbjct: 302 VKVTELTIHQRLNEFKATESGDLTVDQF 329
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 96/243 (39%), Gaps = 50/243 (20%)
Query: 321 EFMTISEGLEGGADPPAFQVAERERMVKASAEEN----SSFERESDSPFMSRVDKVQSPE 376
+ T S G D P + +++ + EE+ S+ E E + S V S
Sbjct: 412 QLSTESNTTTSGTDKPKQPKSNKKQQIPEPTEEDLASESALESEMTALLSSGSSLVASAG 471
Query: 377 PERV--PKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD-NFSDID-DFEVDGYLHNEE 432
P + P N + +A +G+ SD D + ++ D D EV L +
Sbjct: 472 PPKTTPPSNAESSSAKRQGK-------------PVSDSQDIDPAEFDSDPEVRHCLLSPT 518
Query: 433 EKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVA 492
E K+ IW N++YL Q AK A A A + A
Sbjct: 519 EVEIKERIWVHENKDYLRAQQAKALKRALAAAD-------------------PSTAGGAH 559
Query: 493 KSRKEKQQK------RAAEA----KNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 542
K RK ++ + A E + S A T EATR ML ++ S KINY +LEKL++
Sbjct: 560 KPRKRRKGRIGDVTYLAGEGGDGDRASSRASTPAEATRLMLERRGFSKKINYSLLEKLYE 619
Query: 543 DSV 545
D V
Sbjct: 620 DDV 622
>gi|327356251|gb|EGE85108.1| transcription factor TFIIIB complex subunit brf1 [Ajellomyces
dermatitidis ATCC 18188]
Length = 820
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 148/268 (55%), Gaps = 16/268 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D C CG V+ + N +E TF ++A+G + + G FV Q+ +G
Sbjct: 66 DGMKVCSGCGTVVSEANIVSEITFGESASGAAIVQGTFVGAGQTHGRSFGPGFQRGGGME 125
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 126 SREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 183
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 184 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAK 243
Query: 185 RLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 244 QLEFGSSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYV 303
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDF 271
V + E T+ +RL EF+ T+SG LT++ F
Sbjct: 304 VKVTELTIHQRLNEFKATESGDLTVDQF 331
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 418 DID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 471
DID D EV L + E K+ IW N++YL Q AK A A+ E
Sbjct: 487 DIDASEFDSDPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAE---EEDLI 543
Query: 472 N--CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 529
N P + ++ V + + + + + A T EATRRML K+ S
Sbjct: 544 NGRVPGITRRPRKRRKGRMGDVGYLEGKGENGEDVDGRGTR-ASTPAEATRRMLEKRGFS 602
Query: 530 SKINYDVLEKLFDD 543
KINY +LE++++D
Sbjct: 603 KKINYRLLEEMYED 616
>gi|295660722|ref|XP_002790917.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281169|gb|EEH36735.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 800
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 147/268 (54%), Gaps = 16/268 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA------------ 65
D C CG V+ + N +E TF ++A+G + + G FV QS +
Sbjct: 66 DGMKVCSGCGTVVSESNIVSEITFGESASGAAIVQGTFVGADQSHGRSGGPGFQRGGGME 125
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 126 SREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 183
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F
Sbjct: 184 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAK 243
Query: 185 RLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 244 QLEFGTSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYV 303
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDF 271
V + E T+ +RL EF+ T+SG LT++ F
Sbjct: 304 VKVTELTIHQRLNEFKATESGELTVDQF 331
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 421 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 480
D EV L + E K+ IW N++YL Q AK A K AL A
Sbjct: 494 DPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL-------------A 535
Query: 481 QELAAAAAAAVAKSRKEKQQKRAAEA--------------KNSGPAQTALEATRRMLTKK 526
+E VA +++++ R + A T EATRRML K+
Sbjct: 536 EEEELVNGRRVANRPRKRRKGRMGDVGYLGEGNGEGGEGEGGGTRASTPAEATRRMLEKR 595
Query: 527 RLSSKINYDVLEKLFDD 543
S KINY +LE++++D
Sbjct: 596 GFSKKINYRLLEEMYED 612
>gi|345804203|ref|XP_548005.3| PREDICTED: transcription factor IIIB 90 kDa subunit [Canis lupus
familiaris]
Length = 812
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 121/196 (61%), Gaps = 8/196 (4%)
Query: 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 137
+ + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 228 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 285
Query: 138 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 196
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 286 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 340
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 341 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 400
Query: 257 EFENTDSGSLTIEDFM 272
EFE+T + LT+++FM
Sbjct: 401 EFEDTPTSQLTVDEFM 416
>gi|300121033|emb|CBK21415.2| unnamed protein product [Blastocystis hominis]
Length = 592
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 152/288 (52%), Gaps = 28/288 (9%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQS-----QLSGNFVRT 58
C +C + V D Q+ C CG V++++ F N S L+ V
Sbjct: 3 CPACKQEVFDLGGGDGQVICTNCGCVIDENQIVNNVEFNGNGESASFYSFFGLTRRIVGQ 62
Query: 59 IQSEYGA--------------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIA 104
+ +E G+ SRE + + Q+ LN+ ++ A + +A
Sbjct: 63 VVNETGSSSYASSSGRYSYKESREVTLLNGRKKISQIAAGLNL---QNLISNACNVFNLA 119
Query: 105 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164
VA+NFT+GR+ V A+CLY+ACR P +LIDF++ L +V+ LG+VY+++ +L +
Sbjct: 120 VAKNFTQGRKATHVCAACLYVACRMNKIPTMLIDFADLLQTDVWSLGSVYMKMNNMLGLK 179
Query: 165 DESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRKPSGLCGAA 223
+K +DPS+++++F ++ G VC TA I M+RDWI GR+P G+ AA
Sbjct: 180 -----MKPIDPSLYINRFASQMEFGDQLSAVCLTALRITKRMQRDWIVLGRRPLGIVAAA 234
Query: 224 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
L ++A HG + +K DI+ IV + E TL RL EFE+T S SLTI+ F
Sbjct: 235 LLLAARIHGFRRTKKDILSIVKVSEETLRIRLAEFESTPSSSLTIDQF 282
>gi|348527462|ref|XP_003451238.1| PREDICTED: transcription factor IIIB 90 kDa subunit, partial
[Oreochromis niloticus]
Length = 606
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 6/177 (3%)
Query: 97 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 156
A FY +A+ ++ T+GR+ V A+C+Y+ CR + P +L+D S+ L +NVY LG +L
Sbjct: 21 ALNFYKMALIKHLTRGRKASHVIAACIYMVCRTEGTPHMLLDLSDILQVNVYVLGRTFLV 80
Query: 157 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRK 215
L + L I + +DP +++ +F L G ++V TA ++ MKRDW+ TGR+
Sbjct: 81 LARELCINAAA-----IDPCLYIPRFAQMLEFGDKTREVSMTALRLVQRMKRDWMHTGRR 135
Query: 216 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
PSGLCGAAL V+A H + + +IV IV +CE+TL KRL EFE+T + LTIE+FM
Sbjct: 136 PSGLCGAALLVAARLHDFRRTVKEIVNIVKVCESTLRKRLTEFEDTPTSQLTIEEFM 192
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 27/132 (20%)
Query: 409 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 468
A G + S I+D E++ YL +++E K +W N YL+EQ KEA A K
Sbjct: 372 ADSGELDLSGINDSEIELYLLSDKEVKIKTALWMAENSTYLKEQKEKEAKIAKEK----- 426
Query: 469 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 528
A + K RK + R A TA EA +ML +KR+
Sbjct: 427 -------------------ALGIYKERKPRGPNRKHPPIR---ANTADEAIEKMLEQKRI 464
Query: 529 SSKINYDVLEKL 540
SSKINYDVL+ L
Sbjct: 465 SSKINYDVLKDL 476
>gi|308503040|ref|XP_003113704.1| CRE-BRF-1 protein [Caenorhabditis remanei]
gi|308263663|gb|EFP07616.1| CRE-BRF-1 protein [Caenorhabditis remanei]
Length = 783
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 144/285 (50%), Gaps = 31/285 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQ-LSGNFVRTIQSE 62
CS+C C CG VLE+ TE F + A G L G FV
Sbjct: 5 CSNCGSAEIDEDAARGDATCTVCGTVLEESIVVTENQFQERAGGSGHTLVGQFV------ 58
Query: 63 YGASRERLMEKAFDDM-----RQMKNALNIGESDEI----------VHVAKRFYGIAVAR 107
S ER F+ M R+M A DE+ ++ A F+ + V+R
Sbjct: 59 ---SAERAAANNFNGMGSQESREMTYAKGRKVIDELGSQLRINAHCMNTAFNFFKMCVSR 115
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
N T+GR V A CLY+ CR ++ LL+DFS+ INV++LG + + L I
Sbjct: 116 NLTRGRNRSSVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRNLNFIARSLRIN--- 172
Query: 168 NVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DP +++ +F L G +K + A ++ MKRDW++TGR+P+G+CGAAL +
Sbjct: 173 --LPATDPCLYIIRFACVLDFGDKQKDIVTLATRLVQRMKRDWMSTGRRPTGICGAALLI 230
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+A + S +DIV++VHI E+ + KRL EF T SGSLTI++F
Sbjct: 231 AARSMNFNRSINDIVRVVHISESVIRKRLDEFSQTPSGSLTIDEF 275
>gi|327294325|ref|XP_003231858.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
rubrum CBS 118892]
gi|326465803|gb|EGD91256.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
rubrum CBS 118892]
Length = 876
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 147/268 (54%), Gaps = 16/268 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV QS +G
Sbjct: 86 DGQKVCAGCGTVISESNIVSEVTFGEASSGAAIVQGTFVGADQSHGRSFGPGFQRGGGIE 145
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + + +AV NF +GRRT+ V A LY+
Sbjct: 146 SREITEQNGNRYIAQLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYI 203
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F+
Sbjct: 204 ACRRQDGNTIMLIDFADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSK 263
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 264 QLEFGPAMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYV 323
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDF 271
V + E T+ +RL EF+ T+SG LT+++F
Sbjct: 324 VKVTELTIHQRLNEFKATESGGLTVDEF 351
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 420 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 479
DD EV L + E K+ IW N++YL Q AK A KA EA G
Sbjct: 556 DDPEVQFCLLSPAEVEIKERIWVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHR 611
Query: 480 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 539
++ V +E + S A T EATR ML ++ S KINY + E+
Sbjct: 612 PRKRRKGRIGDVTYLSRESKNADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQ 670
Query: 540 LFDDS 544
++ D+
Sbjct: 671 MYGDN 675
>gi|268562683|ref|XP_002646739.1| C. briggsae CBR-BRF-1 protein [Caenorhabditis briggsae]
Length = 751
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 144/285 (50%), Gaps = 31/285 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQ-LSGNFVRTIQSE 62
CS+C C CG VLE+ TE F + A G L G FV
Sbjct: 5 CSNCGSTEIDEDAARGDATCTTCGTVLEESIVVTENQFQERAGGSGHTLVGQFV------ 58
Query: 63 YGASRERLMEKAFDDM-----RQMKNALNIGESDEI----------VHVAKRFYGIAVAR 107
S ER F+ M R+M A DE+ ++ A F+ + V+R
Sbjct: 59 ---SAERAAANNFNGMGSQESREMTYAKGKKVIDELGSQLRINAHCMNTAFNFFKMCVSR 115
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
N T+GR V A CLY+ CR ++ LL+DFS+ INV++LG + + L I
Sbjct: 116 NLTRGRNRASVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRNLNFISRSLRIN--- 172
Query: 168 NVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
L DP +++ +F L G +K V A ++ MKRDW++TGR+P+G+CGAAL +
Sbjct: 173 --LPATDPCLYIIRFACVLDFGDKQKEVVTLATRLVQRMKRDWMSTGRRPTGICGAALLI 230
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+A + + +DIV++VHI E+ + KRL EF T SGSLTI++F
Sbjct: 231 AARSMNFNRTINDIVRVVHISESVIRKRLDEFSQTPSGSLTIDEF 275
>gi|94732974|emb|CAK11391.1| novel protein (zgc:63497) [Danio rerio]
Length = 606
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 113/175 (64%), Gaps = 8/175 (4%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
F+ + V+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 25 FFKMVVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLAR 84
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPS 217
L I + VDP +++ +F +L G K +V TA +L MKRDW+ TGR+PS
Sbjct: 85 ELCINAPA-----VDPCLYIPRFA-HMLEFGEKTHEVSMTALRLLQRMKRDWMHTGRRPS 138
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
GLCGAAL V+A H + + +++ +V +CEATL KRL EFE T + SLTI++FM
Sbjct: 139 GLCGAALLVAARMHEFRRTVKEVISVVKVCEATLRKRLTEFEETPTSSLTIDEFM 193
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 67/159 (42%), Gaps = 42/159 (26%)
Query: 382 KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIW 441
+ C T+T + E + D G + ID+ E++ Y+ NE E K +W
Sbjct: 349 RQCITETTNVEEKSD--------------SGELDLDGIDEDEIEKYILNEIEVEAKTELW 394
Query: 442 EEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQK 501
+ N EYL EQ KE A K + +YK P+ +E A+
Sbjct: 395 MKQNEEYLREQKEKEERIAKEKE--QGTYKEKPKKPSKKREPILAS-------------- 438
Query: 502 RAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
TA EA +ML +K++SSKINYDVL L
Sbjct: 439 ------------TAGEAIEKMLEQKKISSKINYDVLRDL 465
>gi|444705816|gb|ELW47205.1| Transcription factor IIIB 90 kDa subunit [Tupaia chinensis]
Length = 620
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 141/467 (30%), Positives = 214/467 (45%), Gaps = 78/467 (16%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 64 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 123
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 218
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 124 ELCINAPA-----IDPCLYIPRFAHLLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSG 178
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM------ 272
LCGAAL V+A H + + ++V +V +CE+TL KRL EFE+T + LTIE+FM
Sbjct: 179 LCGAALLVAARMHDFRRTVKEVVSVVKVCESTLRKRLTEFEDTPTSQLTIEEFMRIDLEE 238
Query: 273 -------------ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 319
R K+L + ++ L ++S + + + +P A G
Sbjct: 239 ECDPPSYTAGQKKQRMKQLEQVLSKQLEEVEGEISSYQDEIEIELENSRPRAKG------ 292
Query: 320 EEFMTISEGLEGGADPPAF--QVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEP 377
+ +G A AF + E E + A++ N F +E + + E
Sbjct: 293 -PLPGLKDGSTEDATSSAFGDEDPEDEELEAAASHLNKDFYQE----LLRGGSAMGDSEA 347
Query: 378 ERVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEE 433
VP A + G D + + G D + DG + S IDD E+D H
Sbjct: 348 TGVPDETCRPPALDLGISDSIRECIASQGRDPKDTSGDGELDLSGIDDLEIDRVSHR--- 404
Query: 434 KHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAK 493
+ R + +A KEA A K EL
Sbjct: 405 ------VGAPGPRSQPQLRAEKEARIAKEK------------------ELGVY------- 433
Query: 494 SRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
KE + K++ + + A TA EA +ML +KR+SSKI+Y VL L
Sbjct: 434 --KEHKPKKSGKRREPILASTAGEAIEKMLEQKRISSKIDYSVLRGL 478
>gi|315056331|ref|XP_003177540.1| transcription factor TFIIIB complex subunit brf1 [Arthroderma
gypseum CBS 118893]
gi|311339386|gb|EFQ98588.1| transcription factor TFIIIB complex subunit brf1 [Arthroderma
gypseum CBS 118893]
Length = 877
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 147/268 (54%), Gaps = 16/268 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV QS +G
Sbjct: 86 DGQKVCAGCGTVISESNIVSEVTFGEASSGAAIVQGTFVGADQSHGRSFGPGFQRGGGIE 145
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + + +AV NF +GRRT+ V A LY+
Sbjct: 146 SREITEQNGNRYIAQLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYI 203
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F+
Sbjct: 204 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSK 263
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 264 QLEFGPAMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYV 323
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDF 271
V + E T+ +RL EF+ T+SG LT+++F
Sbjct: 324 VKVTELTIHQRLNEFKATESGGLTVDEF 351
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 83/208 (39%), Gaps = 23/208 (11%)
Query: 355 SSFERESDSPFMSRVDKVQS---PEPERVPKNCTTQ-TASNEGEG--DH----TKTPGVD 404
S+ E E + S D V S P E TTQ T++ G+ DH T T D
Sbjct: 474 SALEDEMTALLSSSSDLVTSTTKPATETTNAEVTTQHTSTTNGDNGTDHQNAETNTAADD 533
Query: 405 ATTEASDGSDNFSDI--------DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKE 456
+TT SDI DD EV L + E K+ IW N++YL Q AK
Sbjct: 534 STTPPQTQQPVSSDIEINPLEFEDDPEVQFCLLSPAEVEIKERIWVHENKDYLRTQQAK- 592
Query: 457 AAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL 516
A KA EA G ++ V E + S A T
Sbjct: 593 ---ALRKALAEAGSDPSRSGAHRPRKRRKGRIGDVTYLSGESKNADGESVAGSR-ASTPA 648
Query: 517 EATRRMLTKKRLSSKINYDVLEKLFDDS 544
EATR ML ++ S KINY + E+++ D+
Sbjct: 649 EATRLMLERRGFSKKINYQLFEQMYGDN 676
>gi|302503376|ref|XP_003013648.1| hypothetical protein ARB_00095 [Arthroderma benhamiae CBS 112371]
gi|291177213|gb|EFE33008.1| hypothetical protein ARB_00095 [Arthroderma benhamiae CBS 112371]
Length = 878
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 147/268 (54%), Gaps = 16/268 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV QS +G
Sbjct: 86 DGQKVCAGCGTVISESNIVSEVTFGEASSGAAIVQGTFVGADQSHGRSFGPGFQRGGGIE 145
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + + +AV NF +GRRT+ V A LY+
Sbjct: 146 SREITEQNGNRYIAQLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYI 203
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F+
Sbjct: 204 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSK 263
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 264 QLEFGPAMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYV 323
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDF 271
V + E T+ +RL EF+ T+SG LT+++F
Sbjct: 324 VKVTELTIHQRLNEFKATESGGLTVDEF 351
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 67/164 (40%), Gaps = 6/164 (3%)
Query: 382 KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-DDFEVDGYLHNEEEKHYKKII 440
K+ Q + + D + TP +SD N + DD EV L + E K+ I
Sbjct: 517 KDADHQNTEPDADTDVSTTPPKPQQPVSSDVEINPLEFEDDPEVQFCLLSPAEVEIKERI 576
Query: 441 WEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQ 500
W N++YL Q AK A KA EA G ++ V E +
Sbjct: 577 WVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHRPRKRRKGRIGDVTYLSGESKN 632
Query: 501 KRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 544
S A T EATR ML ++ S KINY + E+++ D+
Sbjct: 633 ADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQMYGDN 675
>gi|302666612|ref|XP_003024903.1| hypothetical protein TRV_00908 [Trichophyton verrucosum HKI 0517]
gi|291188980|gb|EFE44292.1| hypothetical protein TRV_00908 [Trichophyton verrucosum HKI 0517]
Length = 878
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 147/268 (54%), Gaps = 16/268 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV QS +G
Sbjct: 86 DGQKVCAGCGTVISESNIVSEVTFGEASSGAAIVQGTFVGADQSHGRSFGPGFQRGGGIE 145
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + + +AV NF +GRRT+ V A LY+
Sbjct: 146 SREITEQNGNRYIAQLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYI 203
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F+
Sbjct: 204 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSK 263
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 264 QLEFGPAMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYV 323
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDF 271
V + E T+ +RL EF+ T+SG LT+++F
Sbjct: 324 VKVTELTIHQRLNEFKATESGGLTVDEF 351
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 420 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 479
DD EV L + E K+ IW N++YL Q AK A KA EA G
Sbjct: 556 DDPEVQFCLLSPAEVEIKERIWVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHR 611
Query: 480 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 539
++ V E + S A T EATR ML ++ S KINY + E+
Sbjct: 612 PRKRRKGRIGDVTYLSGESKNADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQ 670
Query: 540 LFDDS 544
++ D+
Sbjct: 671 MYGDN 675
>gi|296822208|ref|XP_002850247.1| transcription factor tfiiib complex subunit brf1 [Arthroderma otae
CBS 113480]
gi|238837801|gb|EEQ27463.1| transcription factor tfiiib complex subunit brf1 [Arthroderma otae
CBS 113480]
Length = 877
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 147/268 (54%), Gaps = 16/268 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV QS +G
Sbjct: 82 DGQKVCAGCGTVISESNIVSEVTFGEASSGAAIVQGTFVGADQSHGRSFGPGFQRGGRIE 141
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + + +AV NF +GRRT+ V A LY+
Sbjct: 142 SREITEQNGNRYIAQLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYI 199
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F+
Sbjct: 200 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNHFIMNPIDPESLIYRFSK 259
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 260 QLEFGPAMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYV 319
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDF 271
V + E T+ +RL EF+ T+SG LT+++F
Sbjct: 320 VKVTELTIHQRLNEFKATESGGLTVDEF 347
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 420 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 479
DD EV L + E K+ IW N++YL Q AK A A+A +AS P G +
Sbjct: 557 DDPEVQFCLLSPAEVEIKERIWVHENKDYLRTQQAKALRKALAEAGSDASR---PGGHRP 613
Query: 480 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 539
+ S + K E+ A T EATR ML ++ S KINY + E+
Sbjct: 614 RKRRKGRMGDVTYLSGEGKNAD--GESVAGSRASTPAEATRLMLERRGFSKKINYQLFEQ 671
Query: 540 LFDD 543
++ D
Sbjct: 672 MYGD 675
>gi|326480366|gb|EGE04376.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
equinum CBS 127.97]
Length = 881
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 147/268 (54%), Gaps = 16/268 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV QS +G
Sbjct: 86 DGQKVCAGCGTVISESNIVSEVTFGEASSGAAIVQGTFVGADQSHGRSFGPRFQRGGGIE 145
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + + +AV NF +GRRT+ V A LY+
Sbjct: 146 SREITEQNGNRYIAQLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYI 203
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F+
Sbjct: 204 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSK 263
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 264 QLEFGPAMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYV 323
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDF 271
V + E T+ +RL EF+ T+SG LT+++F
Sbjct: 324 VKVTELTIHQRLNEFKATESGGLTVDEF 351
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 382 KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-DDFEVDGYLHNEEEKHYKKII 440
K+ Q + D++ TP +SD N + DD EV L + E K+ I
Sbjct: 514 KDADHQNTEPNADTDNSTTPPKSQQPVSSDVEINPLEFEDDPEVQFCLLSPAEVEIKERI 573
Query: 441 WEEMNREYLEEQAAKEAAAAAAKAALEASYKNC--PEGLQAAQ---------ELAAAAAA 489
W N++YL Q AK A A+A +AS P + + E A
Sbjct: 574 WVHENKDYLRTQQAKALRKALAEAGSDASRSGAHRPRKRRKGRIGDVTYLSGETKNADGE 633
Query: 490 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 544
+VA SR A T EATR ML ++ S KINY + E+++ D+
Sbjct: 634 SVAGSR----------------ASTPAEATRLMLERRGFSKKINYQLFEQMYGDN 672
>gi|326475285|gb|EGD99294.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
tonsurans CBS 112818]
Length = 881
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 147/268 (54%), Gaps = 16/268 (5%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D Q C CG V+ + N +E TF + ++G + + G FV QS +G
Sbjct: 86 DGQKVCAGCGTVISESNIVSEVTFGEASSGAAIVQGTFVGADQSHGRSFGPGFQRGGGIE 145
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALNI ES + + +AV NF +GRRT+ V A LY+
Sbjct: 146 SREITEQNGNRYIAQLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYI 203
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR Q +LIDF++ L INV++LG Y L L + ++ +DP +++F+
Sbjct: 204 ACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSK 263
Query: 185 RLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +
Sbjct: 264 QLEFGPAMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYV 323
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDF 271
V + E T+ +RL EF+ T+SG LT+++F
Sbjct: 324 VKVTELTIHQRLNEFKATESGGLTVDEF 351
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 382 KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-DDFEVDGYLHNEEEKHYKKII 440
K+ Q + D++ TP +SD N + DD EV L + E K+ I
Sbjct: 514 KDADHQNTEPNADTDNSTTPPKSQQPVSSDVEINPLEFEDDPEVQFCLLSPAEVEIKERI 573
Query: 441 WEEMNREYLEEQAAKEAAAAAAKAALEASYKNC--PEGLQAAQ---------ELAAAAAA 489
W N++YL Q AK A A+A +AS P + + E A
Sbjct: 574 WVHENKDYLRTQQAKALRKALAEAGSDASRSGAHRPRKRRKGRIGDVTYLSGETKNADGE 633
Query: 490 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 544
+VA SR A T EATR ML ++ S KINY + E+++ D+
Sbjct: 634 SVAGSR----------------ASTPAEATRLMLERRGFSKKINYQLFEQMYGDN 672
>gi|410963029|ref|XP_003988069.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Felis catus]
Length = 563
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 111/171 (64%), Gaps = 6/171 (3%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 166
>gi|410963031|ref|XP_003988070.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Felis catus]
Length = 587
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 111/171 (64%), Gaps = 6/171 (3%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 166
>gi|195110647|ref|XP_001999891.1| GI22827 [Drosophila mojavensis]
gi|193916485|gb|EDW15352.1| GI22827 [Drosophila mojavensis]
Length = 671
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 141/266 (53%), Gaps = 23/266 (8%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----EYG----------ASR 67
C CG VLED +E F + G S + G FV S YG SR
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEMGHGASAI-GQFVSAESSGGATNYGYGKFQVGSGTESR 83
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++KA D+ + L + A F+ +A+ R+ T+GR++ + A+C+Y+ C
Sbjct: 84 EVTIKKAKKDITLLCQQLQ--LTQHYADTALNFFKMALHRHLTRGRKSTHIYAACVYMTC 141
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 142 RTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSVDPCLYIMRFANRLQ 196
Query: 188 PG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + +D++ +V I
Sbjct: 197 LGPKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHEFSRTIADVIGVVKI 256
Query: 247 CEATLMKRLIEFENTDSGSLTIEDFM 272
E+TL KRL EF T SG LT+E+FM
Sbjct: 257 HESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 29/132 (21%)
Query: 416 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 475
D++D E+D Y+ EE K +W+ +N E+L EQ +E A + + K
Sbjct: 443 IDDLNDEELDQYVLTAEEADTKLSMWKNLNAEFLREQKEREERMAKEREEGKPEKKKRKP 502
Query: 476 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 535
+ GP+ TA EA +ML +K++SSKINYD
Sbjct: 503 RKKVI-----------------------------GPSSTAGEAIEKMLQEKKISSKINYD 533
Query: 536 VLEKLFDDSVCL 547
+L+ L + CL
Sbjct: 534 ILKTLTEGMGCL 545
>gi|324501334|gb|ADY40597.1| Transcription factor IIIB 90 kDa subunit [Ascaris suum]
Length = 1113
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 134/261 (51%), Gaps = 19/261 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEYGASRERLMEKAF 75
C +CG VLE+ + T+ + + S L G F+ T G + E +
Sbjct: 24 CVKCGMVLEESAIVLDVTYQERSGAGSTLVGQFISHDHEQRHTFSGVPGLPHQEPREVTY 83
Query: 76 DDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
M+ K + I I + A F+ + V RNFT+GR V A+CLY+ CR ++
Sbjct: 84 --MKGKKLIVEIASQLRINQHCIDTAHNFFRMCVCRNFTRGRMRSHVVAACLYMTCRLEN 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-G 190
LL+DFS+ +NV++LG L + L I L DP +++ +F L G
Sbjct: 142 TAHLLLDFSDVTQVNVFDLGRTLNFLARSLKIN-----LPTTDPCLYILRFAVLLEFGEK 196
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 250
K+V A ++ MKRDWI TGR+P+GLCGAAL ++A + + DIV++VHI E
Sbjct: 197 EKEVVSLATRLVQRMKRDWIATGRRPTGLCGAALVLAARCYNFNRTIGDIVRVVHISETV 256
Query: 251 LMKRLIEFENTDSGSLTIEDF 271
+ KRL EF T S LTI++F
Sbjct: 257 VRKRLDEFGKTPSSELTIDEF 277
>gi|195056023|ref|XP_001994912.1| GH17498 [Drosophila grimshawi]
gi|193892675|gb|EDV91541.1| GH17498 [Drosophila grimshawi]
Length = 667
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 141/266 (53%), Gaps = 23/266 (8%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----EYG----------ASR 67
C CG VLED +E F + G + + G FV S YG SR
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEMGHGAAAI-GQFVSAESSGGATNYGYGKFQVGSGTESR 83
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++KA D+ + L + A F+ +A+ R+ T+GR++ + A+C+Y+ C
Sbjct: 84 EVTIKKAKRDITLLCQQLQ--LTQHYADTALNFFKMALHRHLTRGRKSTHIYAACVYMTC 141
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 142 RTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSVDPCLYIMRFANRLQ 196
Query: 188 PGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + +D++ +V I
Sbjct: 197 LGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHEFSRTLADVIGVVKI 256
Query: 247 CEATLMKRLIEFENTDSGSLTIEDFM 272
E+TL KRL EF T SG LT+E+FM
Sbjct: 257 HESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 29/125 (23%)
Query: 416 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 475
D++D E+D Y+ E+E K +W+ +N E+L EQ +E
Sbjct: 435 IDDLNDEELDQYVLTEQEADTKLDMWKNLNAEFLREQQERE------------------- 475
Query: 476 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 535
+ LA + +K K +K+ GP+ TA EA +ML +K++SSKINYD
Sbjct: 476 -----ERLAKEREEGKPEKKKRKPRKKVI-----GPSSTAGEAIEKMLQEKKISSKINYD 525
Query: 536 VLEKL 540
+L+ L
Sbjct: 526 ILKTL 530
>gi|347971505|ref|XP_313145.5| AGAP004233-PA [Anopheles gambiae str. PEST]
gi|333468699|gb|EAA08645.5| AGAP004233-PA [Anopheles gambiae str. PEST]
Length = 688
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 150/264 (56%), Gaps = 20/264 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----RTIQSEYGA--------SRERL 70
C CG VLED+ +E F +NA G + G FV R ++YG SRE
Sbjct: 26 CTNCGSVLEDNIIVSEVQFEENAHGAASAVGQFVASDSRGGATQYGKFQVSTGTESREVT 85
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ KA + + + L + ++ + A F+ +A+ RN T+GRR + A+C+Y+ CR +
Sbjct: 86 LRKARQGITHLCSQLRL--NNHCIETACNFFKMALIRNLTRGRRNTHIYAACVYITCRTE 143
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
LLID S+ L I YELG YL+L Q L + + +DP I++ ++ ++L
Sbjct: 144 GTSHLLIDISDVLQICCYELGRTYLKLSQSLCLN-----IPSIDPCIYIMRYANKLEFKE 198
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
+V TA+ ++ MK+D I +GR+PSGLCGAAL ++A H + +DIV+IV I E+
Sbjct: 199 KTHEVSMTAQRLVQRMKKDSIHSGRRPSGLCGAALLLAARMHDFSRTPNDIVRIVKIHES 258
Query: 250 TLMKRLIEFENTDSGSLTIEDFMA 273
TL KRL EF T S +LT+++FMA
Sbjct: 259 TLRKRLFEFGETPSSALTVDEFMA 282
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 28/125 (22%)
Query: 418 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 477
D+DD E++GY+ EEE K + WE++N EYL++ KE A +
Sbjct: 435 DLDDDEINGYIMTEEEARTKNMQWEKLNEEYLKDMKIKEERLAKER-------------- 480
Query: 478 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 537
+ + EK+++R + K GP+ +A EA +L +K++SSKINYD+L
Sbjct: 481 --------------EEGKPEKKKRRNVKKKMFGPSPSAREAIEMILQEKKISSKINYDIL 526
Query: 538 EKLFD 542
+ L D
Sbjct: 527 KTLTD 531
>gi|195501939|ref|XP_002098010.1| GE24172 [Drosophila yakuba]
gi|194184111|gb|EDW97722.1| GE24172 [Drosophila yakuba]
Length = 666
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 143/267 (53%), Gaps = 25/267 (9%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA---------------S 66
C CG VLED +E F + G + + G FV + +S GA S
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFV-SAESSGGATNYGYGKFQVGSGTES 82
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE ++KA D+ + L S A F+ +A++R+ T+GR++ + A+C+Y+
Sbjct: 83 REVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALSRHLTRGRKSTHIYAACVYMT 140
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 141 CRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSVDPCLYIMRFANRL 195
Query: 187 LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D++ +V
Sbjct: 196 QLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVK 255
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFM 272
I E+TL KRL EF T SG LT+E+FM
Sbjct: 256 IHESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 418 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 477
D++D E+D Y+ E+E K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEDEAVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 478 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 534
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 535 DVLEKLFD 542
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|339241573|ref|XP_003376712.1| transcription factor IIIBsubunit [Trichinella spiralis]
gi|316974558|gb|EFV58043.1| transcription factor IIIBsubunit [Trichinella spiralis]
Length = 605
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 140/259 (54%), Gaps = 14/259 (5%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLM------EKAF 75
C CG V+ ++ +E F + A G+S L G F+ S + + M E +
Sbjct: 22 VCGNCGHVISENTIVSEVEFYETAGGRSVLLGQFIHKDGSSISLTGMKNMNSLSSTELTY 81
Query: 76 DDMRQ-MKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 133
+R+ M+N A + S + RFY IA R+ T+GR++ V S LY++CR + P
Sbjct: 82 IKVRKHMENVASQLQLSQAVTEAGFRFYKIAHGRSLTRGRKSSHVIPSLLYISCRLNAVP 141
Query: 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK- 192
+LIDFS+ +NV+ LG + L + +++ L DP I++ +F +L G +
Sbjct: 142 QMLIDFSDVAEVNVFTLGRTFSFLAREMHLK-----LPPTDPCIYVLRFAQKLRFGDKEN 196
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 252
+V A ++ MK DW+T GR+P+GLCGAAL ++A +G + ++V++VHI L
Sbjct: 197 QVIHLALRLIQRMKNDWMTYGRRPAGLCGAALIIAARYYGFNRTIENVVRVVHIGAGVLR 256
Query: 253 KRLIEFENTDSGSLTIEDF 271
KRL EF T S S T+++F
Sbjct: 257 KRLDEFCLTPSASFTLDEF 275
>gi|297298726|ref|XP_001098066.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Macaca
mulatta]
Length = 621
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 135/249 (54%), Gaps = 27/249 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L
Sbjct: 140 CRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLL 194
Query: 187 LPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V
Sbjct: 195 EFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVK 254
Query: 246 ICEATLMKR 254
+CE+TL KR
Sbjct: 255 VCESTLRKR 263
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 62/159 (38%), Gaps = 49/159 (30%)
Query: 404 DATTEASDGSDNFSDIDDFEVD----------------------GYLHNEEEKHYKKIIW 441
D + DG + S IDD E+D Y+ NE E K +W
Sbjct: 359 DPKDASGDGELDLSGIDDLEIDRHDLSTPWCAKAKSQPHFPVLAQYILNESEARVKAELW 418
Query: 442 EEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQK 501
N EYL EQ KEA A K EL KE + K
Sbjct: 419 MRENAEYLREQREKEARIAKEK------------------ELGIY---------KEHKPK 451
Query: 502 RAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 452 KSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 490
>gi|195570167|ref|XP_002103080.1| GD20238 [Drosophila simulans]
gi|194199007|gb|EDX12583.1| GD20238 [Drosophila simulans]
Length = 662
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 143/267 (53%), Gaps = 25/267 (9%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA---------------S 66
C CG VLED +E F + G + + G FV + +S GA S
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFV-SAESSGGATNYGYGKFQVGSGTES 82
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE ++KA D+ + L S A F+ +A++R+ T+GR++ + A+C+Y+
Sbjct: 83 REVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALSRHLTRGRKSTHIYAACVYMT 140
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 141 CRTEGTSHLLIDISDVQQICSYELGRTYLKLSHSLCIN-----IPSVDPCLYIMRFANRL 195
Query: 187 LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D++ +V
Sbjct: 196 QLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVK 255
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFM 272
I E+TL KRL EF T SG LT+E+FM
Sbjct: 256 IHESTLRKRLSEFAETPSGGLTLEEFM 282
>gi|242783999|ref|XP_002480298.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces stipitatus ATCC 10500]
gi|218720445|gb|EED19864.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 157/286 (54%), Gaps = 22/286 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS------------RER 69
C+ CG V+ + + +E +F + +AG + + G++V Q+ +S RE
Sbjct: 93 VCETCGAVVSEDHLVSEISFGETSAGAAVVQGSYVGADQTHTRSSGPGFHRGGGMESREI 152
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR- 128
+ ++QM AL+I ES + A + + +AV NF +GRRT+ V A CLY+ACR
Sbjct: 153 TEQNGARYIQQMALALDIPESAQ--KAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRR 210
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
Q +LID S+ L INV+++G Y L + L + + VDP + +F R L
Sbjct: 211 QPGNTVMLIDLSDVLMINVFKVGRAYKMLLEELRLGGTVFTMNPVDPENLILRFA-RQLE 269
Query: 189 GGNKK--VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
GNK V A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V +
Sbjct: 270 FGNKTMHVAKEAARIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKV 329
Query: 247 CEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPK 292
E T+ +RL EF +TDSG LT++ F + +H A + P+ PK
Sbjct: 330 TEVTINQRLNEFSSTDSGDLTVDQF----RSVHLETAHDPPSFNPK 371
>gi|157128816|ref|XP_001655207.1| transcription factor IIIB 90 kDa subunit (TFIIIB90) [Aedes aegypti]
gi|108882162|gb|EAT46387.1| AAEL002427-PA [Aedes aegypti]
Length = 609
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 152/265 (57%), Gaps = 22/265 (8%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA-------------SRER 69
C CG VLED+ +E F +NA G S G FV + S+ GA SRE
Sbjct: 25 CTNCGSVLEDNIIVSEVQFEENAHGASSAVGQFVAS-DSKGGATAYGKFHVGTGTESREV 83
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ KA + + + L++ ++ + A F+ +A+ R+ T+GRR + A+C+Y+ CR
Sbjct: 84 TLRKARQGITHLCHQLHL--NNHCIETACNFFKMALIRHLTRGRRNTHIYAACVYITCRT 141
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LP 188
+ LLID S+ L I YELG YL+L Q L I + +DP I++ ++ ++L
Sbjct: 142 EGTSHLLIDISDVLQICCYELGRTYLKLSQALCIN-----IPSIDPCIYIMRYANKLEFA 196
Query: 189 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
+V TA+ ++ MK+D I +GR+PSGLCGAAL ++A H + +DIV+IV I E
Sbjct: 197 EKTHEVSMTAQRLVQRMKKDSIHSGRRPSGLCGAALLLAARMHEFSRTPNDIVRIVKIHE 256
Query: 249 ATLMKRLIEFENTDSGSLTIEDFMA 273
+TL KRL+EF T S +LT+++FM+
Sbjct: 257 STLRKRLVEFGETPSSALTLDEFMS 281
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 28/122 (22%)
Query: 423 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 482
E++GY+ EEE YK ++W ++ E+L+E KE A + EG
Sbjct: 428 EINGYIMTEEEARYKDMMWNRLHAEHLKEMKEKEERLAKERE----------EG------ 471
Query: 483 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 542
+ EK+++++A KN GP+ +A EA +ML +K++S+KINYD+L+ L D
Sbjct: 472 ------------KPEKKKRKSARKKNIGPSNSAGEAIEKMLQEKKISTKINYDILKTLTD 519
Query: 543 DS 544
+
Sbjct: 520 SA 521
>gi|344303886|gb|EGW34135.1| hypothetical protein SPAPADRAFT_59552, partial [Spathaspora
passalidarum NRRL Y-27907]
Length = 461
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 135/498 (27%), Positives = 227/498 (45%), Gaps = 61/498 (12%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE+ + A +R++ +L I D I A ++ +A+ NF +GRR+ V A+CLY+
Sbjct: 3 SREQTLLNAKRKIRRIAASLQI--PDYIAEAAGEWFRLALTLNFVQGRRSNNVLATCLYV 60
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
ACR++ +LIDFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++
Sbjct: 61 ACRKEKTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFAEK 116
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L N KV A + M DWI GR+P+G+ GA + ++A + + + ++IV +
Sbjct: 117 LDFRDKNTKVVKDAVKLAHRMSADWIHEGRRPAGIAGACVLLAARMNNFRRTHAEIVAVA 176
Query: 245 HICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHK 304
H+ E TL +RL EF+ T + LT++ F +KE+ + N K +++ L
Sbjct: 177 HVGEETLQRRLNEFKRTRAAELTVKSFRENEKEIESSNPPSYDKNRAKEKKISKAL--ET 234
Query: 305 DTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSP 364
D GL + E+ I + L P Q ++++ + + S +ES +
Sbjct: 235 DGSLKDFTGLTK---EQAQNILDNL-----PKEEQ---EKQIILNTILTDMSLTKESLTQ 283
Query: 365 FMSRVDKVQSPEPER----VPKNCTTQTASNEGEGDHTKTP-----GVDATTE-----AS 410
M R+ ++ + ++ P ++Q S+ + P + T E +S
Sbjct: 284 EMERILNIKKTKLKQSLYETPYELSSQEESDLDKIWRLNWPKNLVKNLPKTEEMLQKVSS 343
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
+ N D DD ++ L E E K+ IW +N ++L EQ K
Sbjct: 344 EVELNSDDDDDIVLESKL-TEAEIQIKERIWTGLNHDFLVEQERKRLK------------ 390
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKE-------KQQKRAAEAKNSGPAQTALEATRRML 523
Q A EL +A K R+ K + E G +A +A
Sbjct: 391 -------QEADELTGNTSAQPRKKRQRSVIPPELKGEFSGVELDADGNPTSAKDAAMIYF 443
Query: 524 TKKRLSSKINYDVLEKLF 541
+K +S K+NY+ L LF
Sbjct: 444 SKTPVSKKLNYENLTGLF 461
>gi|157128814|ref|XP_001655206.1| transcription factor IIIB 90 kDa subunit (TFIIIB90) [Aedes aegypti]
gi|108882161|gb|EAT46386.1| AAEL002427-PB [Aedes aegypti]
Length = 644
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 152/265 (57%), Gaps = 22/265 (8%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA-------------SRER 69
C CG VLED+ +E F +NA G S G FV + S+ GA SRE
Sbjct: 25 CTNCGSVLEDNIIVSEVQFEENAHGASSAVGQFVAS-DSKGGATAYGKFHVGTGTESREV 83
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ KA + + + L++ ++ + A F+ +A+ R+ T+GRR + A+C+Y+ CR
Sbjct: 84 TLRKARQGITHLCHQLHL--NNHCIETACNFFKMALIRHLTRGRRNTHIYAACVYITCRT 141
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LP 188
+ LLID S+ L I YELG YL+L Q L I + +DP I++ ++ ++L
Sbjct: 142 EGTSHLLIDISDVLQICCYELGRTYLKLSQALCIN-----IPSIDPCIYIMRYANKLEFA 196
Query: 189 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
+V TA+ ++ MK+D I +GR+PSGLCGAAL ++A H + +DIV+IV I E
Sbjct: 197 EKTHEVSMTAQRLVQRMKKDSIHSGRRPSGLCGAALLLAARMHEFSRTPNDIVRIVKIHE 256
Query: 249 ATLMKRLIEFENTDSGSLTIEDFMA 273
+TL KRL+EF T S +LT+++FM+
Sbjct: 257 STLRKRLVEFGETPSSALTLDEFMS 281
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 28/120 (23%)
Query: 423 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 482
E++GY+ EEE YK ++W ++ E+L+E KE A + EG
Sbjct: 428 EINGYIMTEEEARYKDMMWNRLHAEHLKEMKEKEERLAKERE----------EG------ 471
Query: 483 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 542
+ EK+++++A KN GP+ +A EA +ML +K++S+KINYD+L+ L D
Sbjct: 472 ------------KPEKKKRKSARKKNIGPSNSAGEAIEKMLQEKKISTKINYDILKTLTD 519
>gi|8099214|gb|AAF72066.1|AF262375_1 RNA polymerase III transcription factor BRF [Drosophila
melanogaster]
Length = 662
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 142/267 (53%), Gaps = 25/267 (9%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA---------------S 66
C CG VLED +E F + G + + G FV + +S GA S
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFV-SAESSGGATNYGYGKFQVGSGTES 82
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE ++KA D+ + L S A F+ +A+ R+ T+GR++ + A+C+Y+
Sbjct: 83 REVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMT 140
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + LLID S+ I YELG YL+L L I + +DP +++ +F +RL
Sbjct: 141 CRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSLDPCLYIMRFANRL 195
Query: 187 LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D++ +V
Sbjct: 196 QLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVK 255
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFM 272
I E+TL KRL EF T SG LT+E+FM
Sbjct: 256 IHESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 418 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 477
D++D E+D Y+ EEE K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 478 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 534
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 535 DVLEKLFD 542
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|24647658|ref|NP_650616.2| Brf, isoform A [Drosophila melanogaster]
gi|281361961|ref|NP_001163636.1| Brf, isoform B [Drosophila melanogaster]
gi|15291933|gb|AAK93235.1| LD32109p [Drosophila melanogaster]
gi|23171547|gb|AAF55409.2| Brf, isoform A [Drosophila melanogaster]
gi|220945996|gb|ACL85541.1| Brf-PA [synthetic construct]
gi|272477027|gb|ACZ94932.1| Brf, isoform B [Drosophila melanogaster]
Length = 662
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 142/267 (53%), Gaps = 25/267 (9%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA---------------S 66
C CG VLED +E F + G + + G FV + +S GA S
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFV-SAESSGGATNYGYGKFQVGSGTES 82
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE ++KA D+ + L S A F+ +A+ R+ T+GR++ + A+C+Y+
Sbjct: 83 REVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMT 140
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + LLID S+ I YELG YL+L L I + +DP +++ +F +RL
Sbjct: 141 CRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSLDPCLYIMRFANRL 195
Query: 187 LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D++ +V
Sbjct: 196 QLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVK 255
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFM 272
I E+TL KRL EF T SG LT+E+FM
Sbjct: 256 IHESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 418 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 477
D++D E+D Y+ EEE K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 478 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 534
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 535 DVLEKLFD 542
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|8099212|gb|AAF72065.1|AF262374_1 RNA polymerase III transcription factor BRF [Drosophila
melanogaster]
Length = 662
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 142/267 (53%), Gaps = 25/267 (9%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA---------------S 66
C CG VLED +E F + G + + G FV + +S GA S
Sbjct: 25 VCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFV-SAESSGGATNYGYGKFQVGSGTES 82
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE ++KA D+ + L S A F+ +A+ R+ T+GR++ + A+C+Y+
Sbjct: 83 REVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMT 140
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + LLID S+ I YELG YL+L L I + +DP +++ +F +RL
Sbjct: 141 CRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN-----IPSLDPCLYIMRFANRL 195
Query: 187 LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D++ +V
Sbjct: 196 QLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVK 255
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFM 272
I E+TL KRL EF T SG LT+E+FM
Sbjct: 256 IHESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 418 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 477
D++D E+D Y+ EEE K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 478 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 534
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 535 DVLEKLFD 542
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|195443968|ref|XP_002069658.1| GK11456 [Drosophila willistoni]
gi|194165743|gb|EDW80644.1| GK11456 [Drosophila willistoni]
Length = 691
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 143/285 (50%), Gaps = 23/285 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-- 61
C +C + C CG VLED +E F + G + G FV S
Sbjct: 7 CRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEAGHGAVAI-GQFVSAESSGG 65
Query: 62 --EYG----------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNF 109
YG SRE ++KA D+ + L S A F+ +A+ R+
Sbjct: 66 ATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALGRHL 123
Query: 110 TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV 169
T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL+L L I
Sbjct: 124 TRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCIN----- 178
Query: 170 LKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
+ VDP +++ +F +RL G +V TA I+ MK+D + +GR+P+GLCGAAL ++A
Sbjct: 179 IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAA 238
Query: 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 273
H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 239 RMHDFSRTLVDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMT 283
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 28/125 (22%)
Query: 418 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 477
D++D E+D Y+ EEE K +W+ +N EYL+EQ +E
Sbjct: 444 DLNDDELDQYVLTEEEAVTKLNMWQTLNAEYLKEQKERE--------------------- 482
Query: 478 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 537
+ LA + +K K ++ GP+ TA EA +ML +K++SSKINY++L
Sbjct: 483 ---ERLAKEREEGKPEKKKRKPPRKKI----IGPSSTAGEAIEKMLQEKKISSKINYEIL 535
Query: 538 EKLFD 542
+ L D
Sbjct: 536 KTLID 540
>gi|321260370|ref|XP_003194905.1| transcription factor iiib 70 kd subunit [Cryptococcus gattii WM276]
gi|317461377|gb|ADV23118.1| transcription factor iiib 70 kd subunit, putative [Cryptococcus
gattii WM276]
Length = 696
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 139/262 (53%), Gaps = 17/262 (6%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASR---------ERLM 71
+ C RCG+++E+ +E F ++A G+ + G FV + SR E +
Sbjct: 24 IVCQRCGQIVEEGILVSEVGFAESAGGRVHVQGTFVSNYATGVAGSRGGRGGQQNIENIK 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ + + +++ S I A RF+ +AV F +GR+T+ + ASCLYL CR K
Sbjct: 84 AQGASRIEALSRQMHL--SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKK 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG- 190
+LIDFS + INV+ELGA YL+L L + D + +VDP+I+ +F RL G
Sbjct: 142 DAHMLIDFSEHKGINVFELGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQ 198
Query: 191 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
N D +R ++ + DW+T GR+P+G+CGA L ++ + ++ ++V +
Sbjct: 199 VNTVAADASR-LVRRFRADWMTQGRRPAGVCGACLIIAGRMSNFLRTPDEVAQVVKVHPN 257
Query: 250 TLMKRLIEFENTDSGSLTIEDF 271
T+ KRL+EF TD T+ ++
Sbjct: 258 TIKKRLLEFAQTDMAKKTVGEW 279
>gi|134113394|ref|XP_774722.1| hypothetical protein CNBF4010 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257366|gb|EAL20075.1| hypothetical protein CNBF4010 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 694
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 139/262 (53%), Gaps = 17/262 (6%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASR---------ERLM 71
+ C RCG+++E+ +E F ++A G+ + G FV + SR E +
Sbjct: 24 IVCQRCGQIVEEGILVSEVGFAESAGGRVHVQGTFVSNYATGVAGSRGGRGGQQNIENIK 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ + + +++ S I A RF+ +AV F +GR+T+ + ASCLYL CR K
Sbjct: 84 AQGASRIEALSRQMHL--SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKK 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG- 190
+LIDFS + INV+ELGA YL+L L + D + +VDP+I+ +F RL G
Sbjct: 142 DAHMLIDFSEHKGINVFELGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQ 198
Query: 191 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
N D +R ++ + DW+T GR+P+G+CGA L ++ + ++ ++V +
Sbjct: 199 VNTVAADASR-LVRRFRADWMTQGRRPAGVCGACLIIAGRMSNFLRTPDEVAQVVKVHPN 257
Query: 250 TLMKRLIEFENTDSGSLTIEDF 271
T+ KRL+EF TD T+ ++
Sbjct: 258 TIKKRLLEFAQTDMAKKTVGEW 279
>gi|58268656|ref|XP_571484.1| transcription factor iiib 70 kd subunit [Cryptococcus neoformans
var. neoformans JEC21]
gi|57227719|gb|AAW44177.1| transcription factor iiib 70 kd subunit, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 691
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 139/262 (53%), Gaps = 17/262 (6%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASR---------ERLM 71
+ C RCG+++E+ +E F ++A G+ + G FV + SR E +
Sbjct: 24 IVCQRCGQIVEEGILVSEVGFAESAGGRVHVQGTFVSNYATGVAGSRGGRGGQQNIENIK 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ + + +++ S I A RF+ +AV F +GR+T+ + ASCLYL CR K
Sbjct: 84 AQGASRIEALSRQMHL--SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKK 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG- 190
+LIDFS + INV+ELGA YL+L L + D + +VDP+I+ +F RL G
Sbjct: 142 DAHMLIDFSEHKGINVFELGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQ 198
Query: 191 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
N D +R ++ + DW+T GR+P+G+CGA L ++ + ++ ++V +
Sbjct: 199 VNTVAADASR-LVRRFRADWMTQGRRPAGVCGACLIIAGRMSNFLRTPDEVAQVVKVHPN 257
Query: 250 TLMKRLIEFENTDSGSLTIEDF 271
T+ KRL+EF TD T+ ++
Sbjct: 258 TIKKRLLEFAQTDMAKKTVGEW 279
>gi|195349135|ref|XP_002041102.1| GM15370 [Drosophila sechellia]
gi|194122707|gb|EDW44750.1| GM15370 [Drosophila sechellia]
Length = 356
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 143/266 (53%), Gaps = 25/266 (9%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA---------------SR 67
C CG VLED +E F + G + + G FV + +S GA SR
Sbjct: 26 CMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFV-SAESSGGATNYGYGKFQVGSGTESR 83
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E ++KA D+ + L S A F+ +A++R+ T+GR++ + A+C+Y+ C
Sbjct: 84 EVTIKKAKKDITLLCQQLQ--LSQHYADTALNFFKMALSRHLTRGRKSTHIYAACVYMTC 141
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + LLID S+ I YELG YL+L L I + VDP +++ +F +RL
Sbjct: 142 RTEGTSHLLIDISDVQQICSYELGRTYLKLSHSLCIN-----IPSVDPCLYIMRFANRLQ 196
Query: 188 PGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G +V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D++ +V I
Sbjct: 197 LGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVKI 256
Query: 247 CEATLMKRLIEFENTDSGSLTIEDFM 272
E+TL KRL EF T SG LT+E+FM
Sbjct: 257 HESTLRKRLSEFAETPSGGLTLEEFM 282
>gi|212527540|ref|XP_002143927.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces marneffei ATCC 18224]
gi|210073325|gb|EEA27412.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces marneffei ATCC 18224]
Length = 744
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 154/285 (54%), Gaps = 20/285 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS------------RER 69
C+ CG V+ + +E +F + +AG + + G++V Q+ +S RE
Sbjct: 90 VCETCGAVVSEDTLVSEISFGETSAGAAVVQGSYVGADQTHTRSSGPGFHRGGGMESREI 149
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR- 128
+ ++QM AL+I ES + A + + +AV NF +GRRT+ V A CLY+ACR
Sbjct: 150 TEQNGARYIQQMALALDIPESAQ--KAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRR 207
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
Q +LID S+ L INV+++G Y L + L + + VDP + +F +L
Sbjct: 208 QPGNTVMLIDLSDVLMINVFKVGRAYKMLLEELRLGGTVFTMNPVDPENLILRFAKQLEF 267
Query: 189 GGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G V A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V +
Sbjct: 268 GNRTMHVAKEAARIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVT 327
Query: 248 EATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPK 292
E T+ +RL EF +TDSG LT++ F + +H A + P+ PK
Sbjct: 328 EVTINQRLNEFSSTDSGGLTVDQF----RSVHLETAHDPPSFNPK 368
>gi|67525317|ref|XP_660720.1| hypothetical protein AN3116.2 [Aspergillus nidulans FGSC A4]
gi|40744511|gb|EAA63687.1| hypothetical protein AN3116.2 [Aspergillus nidulans FGSC A4]
gi|259485934|tpe|CBF83378.1| TPA: transcription factor TFIIIB complex subunit Brf1, putative
(AFU_orthologue; AFUA_3G12730) [Aspergillus nidulans
FGSC A4]
Length = 713
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 140/256 (54%), Gaps = 31/256 (12%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDD 77
D Q C CG V+ + N +E TF ++A+G + + G+FV Q+ + AS+
Sbjct: 71 DGQKVCSGCGTVVSEANIVSEVTFGESASGAAIVQGSFVGEDQT-HSASK---------- 119
Query: 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 136
A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 120 ------------------AAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 161
Query: 137 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVC 195
IDF++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 162 IDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGPSTMQVA 221
Query: 196 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 255
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 222 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRL 281
Query: 256 IEFENTDSGSLTIEDF 271
EF +T+SG LT++ F
Sbjct: 282 NEFSSTESGELTVDQF 297
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
Query: 421 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 480
D EV L E K+ IW N++YL Q AK A K ALE + +
Sbjct: 461 DPEVSNCLLAPHEVEIKERIWVHENKDYLRTQQAK-----ALKRALEEADAQPGDRKPRK 515
Query: 481 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
+ + E R+ A T EATRRML ++ S KINY +LE L
Sbjct: 516 RRKGRLGDVRYLEGEGEDGDGRSTRAS------TPAEATRRMLERRGFSKKINYRLLETL 569
Query: 541 F 541
F
Sbjct: 570 F 570
>gi|399949553|gb|AFP65211.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949714|gb|AFP65372.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949718|gb|AFP65375.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949887|gb|AFP65544.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949891|gb|AFP65547.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399950057|gb|AFP65713.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
Length = 427
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 143/272 (52%), Gaps = 15/272 (5%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATF-VKNAAGQSQLSGNFVRTIQ-- 60
C C ++ C CG ++EDH + E F N + + G+F++ +
Sbjct: 3 CDKCGSDAIEFNVSQGKILCTFCGLMIEDHLANPELLFDNSNVQKKGTIHGSFLKNVSPG 62
Query: 61 --SEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+ + E ++ A + Q NAL + S + A RF+ A R F + E V
Sbjct: 63 SLNPTNRNTEIILSSARRKIHQFGNALKLKSSYQ--EEAYRFFVFAFQRGFVPAHKFESV 120
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
SCLY+ CR+K P LL+DFS+ I Y++G ++L+ ++ ++ L DPS+F
Sbjct: 121 CISCLYVVCRRKKTPHLLVDFSDLTQIQTYKIGGIFLKFIRIFHVH-----LPVADPSLF 175
Query: 179 LHKFTDRLLPGGNKKVC--DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
+++F RL GNK C ++ ++A MKR+W+ +GR+P+GLCGAA+ ++A HG++ +
Sbjct: 176 VYRFISRL-KIGNKFECIARSSFRLIARMKREWMNSGRRPAGLCGAAILLAAKMHGIQKT 234
Query: 237 KSDIVKIVHICEATLMKRLIEFENTDSGSLTI 268
+ +I +I I + L RL E E T +LT+
Sbjct: 235 QKEIGEIARIGDMALRTRLREMETTSMANLTL 266
>gi|405121456|gb|AFR96225.1| transcription factor iiib 70 kd subunit [Cryptococcus neoformans
var. grubii H99]
Length = 684
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 139/262 (53%), Gaps = 17/262 (6%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASR---------ERLM 71
+ C RCG+++E+ +E F ++A G+ + G FV + SR E +
Sbjct: 24 IVCQRCGQIVEEGILVSEVGFAESAGGRVHVQGTFVSNYATGVAGSRGGRGGQQNIENIK 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ + + +++ S I A RF+ +AV F +GR+T+ + ASCLYL CR K
Sbjct: 84 AQGASRIEALSRQMHL--SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKK 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG- 190
+LIDFS + INV+ELGA YL+L L + D + +VDP+I+ +F RL G
Sbjct: 142 DAHMLIDFSEHKGINVFELGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQ 198
Query: 191 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
N D +R ++ + DW+T GR+P+G+CGA L ++ + ++ ++V +
Sbjct: 199 VNIVAADASR-LVRRFRADWMTQGRRPAGVCGACLIIAGRMSNFLRTPDEVAQVVKVHPN 257
Query: 250 TLMKRLIEFENTDSGSLTIEDF 271
T+ KRL+EF TD T+ ++
Sbjct: 258 TIKKRLLEFAQTDMAKKTVGEW 279
>gi|358422124|ref|XP_875578.3| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit [Bos taurus]
Length = 595
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 108/171 (63%), Gaps = 8/171 (4%)
Query: 103 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162
+AV+++ T+GRRT V A+CLYL CR + P +L+D S+ L +N+ LG L L +
Sbjct: 1 MAVSKHLTRGRRTAHVVAACLYLVCRTEGTPHMLLDLSDLLQVNLVTLGLSGLLLATLRC 60
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
++ DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 VSS-------ADPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 113
Query: 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 114 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 164
>gi|340522164|gb|EGR52397.1| RNA polymerase III transcription initiation factor B complex
component [Trichoderma reesei QM6a]
Length = 679
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 141/265 (53%), Gaps = 18/265 (6%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG+V +D N +E F + ++G + + G FV Q+ G S RE+
Sbjct: 60 TCQTCGRVADDSNIVSEVQFGETSSGAAMVQGTFVGADQAGVRGMGPAFRRVGGSEDREK 119
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LNI SD +V + + +A + NF +GR V A CLY ACR
Sbjct: 120 SIREARGLMQGYAQQLNI--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRA 177
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 178 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIG--ADGLIPVYPEDLIWRFATKMEF 235
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV +
Sbjct: 236 HQDTAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTIREVVYIVKVT 295
Query: 248 EATLMKRLIEFENTDSGSLTIEDFM 272
T+ RL EF NT+S +++EDF+
Sbjct: 296 NHTIQNRLQEFNNTESSRMSVEDFL 320
>gi|429852309|gb|ELA27452.1| transcription factor tfiiib complex subunit brf1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 729
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 146/268 (54%), Gaps = 20/268 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNF-------VRTIQSEY---GAS--RER 69
C CG+V +D N E F + ++G + + G++ VRT+ + G S RE+
Sbjct: 81 VCQTCGRVADDSNIVAEVQFGETSSGAAMVQGSYIAADQAGVRTLGPAFRRVGGSDDREK 140
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ + LN+GE+ V+ A + + +A NF +GR V A CLY ACR
Sbjct: 141 SIREARSLMQGYAHQLNLGEN--TVNTAVQIFKLASQANFVQGRTLVMVAAVCLYAACRT 198
Query: 130 KSKP--FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
+ KP +L+D ++ +NV++LG + L ++I D N QV P +++ +L
Sbjct: 199 E-KPCRIMLMDLADLTQLNVFKLGRAFKALNATVFIFD--NGEGQVFPEDLIYRLASKLE 255
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
+V + A ++ MK+DWI GR+PSG+CGA L ++A H + + +IV +V +
Sbjct: 256 FKHMTNRVAEDAIRLVQRMKQDWIVMGRRPSGICGACLLMAARMHNFRRTVREIVYLVKV 315
Query: 247 CEATLMKRLIEFENTDSGSLTIEDFMAR 274
T+ +RL EF TD+ +T+EDF+A+
Sbjct: 316 TTHTIQERLTEFNVTDASKMTVEDFLAQ 343
>gi|358399904|gb|EHK49241.1| hypothetical protein TRIATDRAFT_290021 [Trichoderma atroviride IMI
206040]
Length = 734
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 140/265 (52%), Gaps = 18/265 (6%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG+V +D N +E F + ++G + + G FV Q+ G S RE+
Sbjct: 78 TCQTCGRVADDSNIVSEVQFGETSSGAAMVQGTFVGADQAGVRGMGPAFRRVGGSEDREK 137
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LNI SD +V + + +A NF +GR V A CLY ACR
Sbjct: 138 SIREARGLMQGYAQQLNI--SDSLVTAGTQVFKLASGANFIQGRTLASVAAVCLYAACRA 195
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 196 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIG--ADGLIPVYPEDLIWRFATKMEF 253
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV +
Sbjct: 254 RQDTAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVT 313
Query: 248 EATLMKRLIEFENTDSGSLTIEDFM 272
T+ RL EF NT+S +++EDF+
Sbjct: 314 NHTIQNRLQEFNNTESSRMSVEDFL 338
>gi|167389091|ref|XP_001738814.1| transcription factor IIIB 60 kDa subunit [Entamoeba dispar SAW760]
gi|165897805|gb|EDR24877.1| transcription factor IIIB 60 kDa subunit, putative [Entamoeba
dispar SAW760]
Length = 546
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 128/473 (27%), Positives = 210/473 (44%), Gaps = 73/473 (15%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
CS C T R L C+ CG V+++ + G+ L+G +++
Sbjct: 23 CSYCGG--TEFRNEQGSLICENCGLVIDNSRALIAELQFDESGGKKILAG-------TQF 73
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQ 119
G + + K +D RQM+ +GE ++ + +R Y +A+ TKGR+
Sbjct: 74 GETEK----KRYDIERQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGRKFSYSA 129
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+CLY+ CR++ LLIDF++ L+++V LG +++ C+ L L VDP ++L
Sbjct: 130 GACLYIICRRERSDHLLIDFADVLHVSVRRLGRTFIRFCEELKFD-----LPFVDPCLYL 184
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F + L V TA I M RDW+ GR+PSG+CG ALY++ HG + +
Sbjct: 185 QRFGEDLAFEKTGDVVRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHGEPRTLEE 244
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEV 299
IV +V + T+ RL EF T S LT+E +L+E + N P +
Sbjct: 245 IVHVVRLSTTTVRVRLKEFLRTPSADLTLE-------QLNEDDQSTTHCNPPSYT----- 292
Query: 300 LCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFER 359
L + KD + GA+ P + + + A E+
Sbjct: 293 LNRLKDKARETV--------------------GANVPLKK--RKGNGDEYEAAEDKKLTE 330
Query: 360 ESDSPFMSRVDKVQS-PEPERVPKNCTT---QTASNEG-EGDH---------TKTPGVDA 405
E ++ V K+ + + P N T ++A + G EG+H K D
Sbjct: 331 EIETLIGGEVSKIMGCKDIDSKPLNLGTLEGKSAKDVGLEGEHFDVEKLVDINKMKEEDF 390
Query: 406 TTEASD-GSDNFSDIDDF--EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 455
+E D G D +F E+DGY +++E +K IWEE+N E+LE++ +
Sbjct: 391 ESEGVDEGECAVGDCSEFDNELDGYFLDDKEAEKRKQIWEELNAEFLEKEKKR 443
>gi|407042182|gb|EKE41189.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
nuttalli P19]
Length = 546
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 128/473 (27%), Positives = 212/473 (44%), Gaps = 73/473 (15%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
CS C T R L C+ CG V+++ + G+ L+G +++
Sbjct: 23 CSYCGG--TEFRNEQGSLICENCGLVIDNSRALIAELQFDESGGKKILAG-------TQF 73
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQ 119
G + + K +D RQM+ +GE ++ + +R Y +A+ TKGR+
Sbjct: 74 GETEK----KRYDIERQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGRKFSYSA 129
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+CLY+ CR++ LLIDF++ L+++V LG +++ C+ L L VDP ++L
Sbjct: 130 GACLYIICRRERSDHLLIDFADVLHVSVRRLGRTFIRFCEELKFD-----LPFVDPCLYL 184
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F + L V TA I M RDW+ GR+PSG+CG ALY++ HG + +
Sbjct: 185 QRFGEDLAFEKTGDVVRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHGEPRTLEE 244
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEV 299
IV +V + T+ RL EF T S LT+E +L+E + P+ P +N +
Sbjct: 245 IVHVVRLSTTTVRVRLKEFLRTPSADLTLE-------QLNEDDQST-PHCNPPSYTLNRL 296
Query: 300 LCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFER 359
K ++T GA+ P + + + A E+
Sbjct: 297 KDKARET------------------------VGANVPLKK--RKGNGDEYEAAEDKKLTE 330
Query: 360 ESDSPFMSRVDKVQS-PEPERVPKNCTT---QTASNEG-EGDH---------TKTPGVDA 405
E ++ V K+ + + P N T ++A + G EG+H K D
Sbjct: 331 EIETLIGGEVSKIMGCKDIDSKPLNLGTLEGKSAKDVGLEGEHFDVEKLVDINKMKEEDF 390
Query: 406 TTEASD-GSDNFSDIDDF--EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 455
+E D G D +F E+DGY +++E +K IWEE+N E+LE++ +
Sbjct: 391 ESEGIDEGECVVGDCSEFDNELDGYFLDDKEAEKRKQIWEELNAEFLEKEKKR 443
>gi|358386661|gb|EHK24256.1| hypothetical protein TRIVIDRAFT_124308, partial [Trichoderma virens
Gv29-8]
Length = 659
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 141/264 (53%), Gaps = 18/264 (6%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RERL 70
C CG+V +D N +E F + ++G + + G FV Q+ G S RE+
Sbjct: 60 CQTCGRVADDSNIVSEVQFGETSSGAAMVQGTFVGADQAGVRGMGPAFRRVGGSEDREKS 119
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ +A M+ LNI SD +V + + +A + NF +GR V A CLY ACR +
Sbjct: 120 IREARGLMQGYAQQLNI--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRAE 177
Query: 131 SK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LP 188
+LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 178 PPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIG--TDGLIPVYPEDLIWRFATKMEFH 235
Query: 189 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV +
Sbjct: 236 QDTAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTIREVVYIVKVTN 295
Query: 249 ATLMKRLIEFENTDSGSLTIEDFM 272
T+ RL EF NT+S +++EDF+
Sbjct: 296 HTIQNRLQEFNNTESSRMSVEDFL 319
>gi|413946302|gb|AFW78951.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 148
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MV+C+ CA + + P +CC CGKVL+ ++ E TFVK+ GQS+L+G+ + +I
Sbjct: 1 MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTDEPTFVKDNKGQSRLAGSILESI 60
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S Y SR+R ++K D++RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V
Sbjct: 61 ESGYSMSRQRTLDKGRDEIRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVA 120
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINV 147
A+CLY+ACRQ K +LLIDFS++L I+V
Sbjct: 121 AACLYIACRQSKKAYLLIDFSDHLQISV 148
>gi|67469641|ref|XP_650799.1| transcription initiation factor IIIB chain BRF [Entamoeba
histolytica HM-1:IMSS]
gi|56467455|gb|EAL45413.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449709301|gb|EMD48588.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
histolytica KU27]
Length = 546
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 128/473 (27%), Positives = 212/473 (44%), Gaps = 73/473 (15%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
CS C T R L C+ CG V+++ + G+ L+G +++
Sbjct: 23 CSYCGG--TEFRNEQGSLICENCGLVIDNSRALIAELQFDESGGKKILAG-------TQF 73
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQ 119
G + + K +D RQM+ +GE ++ + +R Y +A+ TKGR+
Sbjct: 74 GETEK----KRYDIERQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGRKFSYSA 129
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+CLY+ CR++ LLIDF++ L+++V LG +++ C+ L L VDP ++L
Sbjct: 130 GACLYIICRRERSDHLLIDFADVLHVSVRRLGRTFIRFCEELKFD-----LPFVDPCLYL 184
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F + L V TA I M RDW+ GR+PSG+CG ALY++ HG + +
Sbjct: 185 QRFGEDLSFEKTGDVVRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHGEPRTLEE 244
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEV 299
IV +V + T+ RL EF T S LT+E +L+E + P+ P +N +
Sbjct: 245 IVHVVRLSTTTVRVRLKEFLRTPSADLTLE-------QLNEDDQST-PHCNPPSYTLNRL 296
Query: 300 LCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFER 359
K ++T GA+ P + + + A E+
Sbjct: 297 KDKARET------------------------VGANVPLKK--RKGNGDEYEAAEDKKLTE 330
Query: 360 ESDSPFMSRVDKVQS-PEPERVPKNCTT---QTASNEG-EGDH---------TKTPGVDA 405
E ++ V K+ + + P N T ++A + G EG+H K D
Sbjct: 331 EIETLIGGEVSKIMGCKDIDSKPLNLGTLEGKSAKDVGLEGEHFDVEKLVDINKMKEEDF 390
Query: 406 TTEASD-GSDNFSDIDDF--EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 455
+E D G D +F E+DGY +++E +K IWEE+N E+LE++ +
Sbjct: 391 ESEGIDEGECVVGDCSEFDNELDGYFLDDKEAEKRKQIWEELNAEFLEKEKKR 443
>gi|413952557|gb|AFW85206.1| hypothetical protein ZEAMMB73_014139 [Zea mays]
Length = 350
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/121 (61%), Positives = 92/121 (76%), Gaps = 8/121 (6%)
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
LL N V DTA I+ASMKRDW+ T RKPSGLCGAALY++AL+HG ++K+DIV +VH
Sbjct: 141 LLGRRNNDVSDTALRIVASMKRDWMQTRRKPSGLCGAALYIAALSHGCNYTKADIVSVVH 200
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFMARKKELH-EGVAANLPNNGPKVSGMNEVLCKHK 304
+CEATL KRLIEFENTDSGSLTIE+F+A E + E V+ +LP +G E+LCKHK
Sbjct: 201 VCEATLTKRLIEFENTDSGSLTIEEFLATADESNEEPVSKHLPKSG-------EILCKHK 253
Query: 305 D 305
+
Sbjct: 254 E 254
>gi|300708839|ref|XP_002996591.1| hypothetical protein NCER_100286 [Nosema ceranae BRL01]
gi|239605905|gb|EEQ82920.1| hypothetical protein NCER_100286 [Nosema ceranae BRL01]
Length = 282
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 146/273 (53%), Gaps = 19/273 (6%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
CS+C + C CG V E++ + +F N +S L+G + +
Sbjct: 3 CSNCNSSDMATDSAQGVIYCTNCGMVHEENIIVSTISFSDNGL-KSTLNGKVINIDSKQV 61
Query: 64 GASRERLMEKAFDDMRQMKNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
G + D +KN + N+G + + R+Y + + N +KG+
Sbjct: 62 GT-------QYIDASFYIKNTISSICSNMGLGSNFLDCSYRYYRLLLPYNLSKGKSILYT 114
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
++C+Y+ CR++ P LLIDFSN LNI+V+++G + ++ +VL + + VDP+++
Sbjct: 115 LSACVYIVCREEKTPHLLIDFSNALNIDVFKIGKSFTKIVEVLNLN-----IPNVDPTLY 169
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ ++ +L N+K+ A I++ M RDWITTGR+P+ +CGAA+ +++ + + S S
Sbjct: 170 IQRYIVKL-NLKNQKIPTLALRIMSRMSRDWITTGRRPNNICGAAILIASRVYNEERSLS 228
Query: 239 DIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
++ K+VH+ E L KRL+E ++T + L++ F
Sbjct: 229 EVAKVVHVSEFILKKRLLEIQDTQTADLSVNQF 261
>gi|440290064|gb|ELP83518.1| transcription factor IIIB 70 kDa subunit, putative [Entamoeba
invadens IP1]
Length = 545
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 127/476 (26%), Positives = 204/476 (42%), Gaps = 79/476 (16%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C C H R + C+ CG VL+D + G+ +L+G +++
Sbjct: 23 CPEC--HSKNLRKENGSTICEDCGLVLDDCGALIAELQFDESGGRKRLAG-------TQF 73
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQ 119
G + R +D RQM+ +GE ++ + +R Y +A+ R TKGRR
Sbjct: 74 GETERR----RYDVERQMRAIRRVGEMLKMKSSDIESGERLYRVAMQRGITKGRRVAYSA 129
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
+CLY+ CR++ LLIDF++ L+++V +LG ++ C+ L + L VDP ++L
Sbjct: 130 GACLYIICRRERTDHLLIDFADVLHVSVRKLGRTFIHFCKELKLD-----LPFVDPCLYL 184
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F + L V TA I M RDW+ GR+PSG+CG ALY++ H + +
Sbjct: 185 QRFGEDLAFEKTADVVRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHNEPRTLEE 244
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGP-------- 291
IV +V + T+ RL EF T S LT+E +L+E + N P
Sbjct: 245 IVHVVRLSTTTVRVRLKEFLRTPSADLTLE-------QLNEEDTSTTHCNPPSYTQNRLK 297
Query: 292 ----KVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEG----LEG--GADPPAFQVA 341
+V G N L K K + + EE T+ G + G D +
Sbjct: 298 DKAREVVGANVPLKKRKRNCDEYEAAEDKKLTEEIATLIGGEVEKIMGCKNIDEKPINLG 357
Query: 342 ERE-RMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKT 400
E + K E F+ E + V K++ D ++
Sbjct: 358 SLEGKSAKDVGLEGEKFDVEK----LVDVQKIKE---------------------DDFES 392
Query: 401 PGVD-ATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 455
GVD + D + S++D GY ++ E +K IWEE+N E+LE++ +
Sbjct: 393 EGVDEGECQVGDCAAFDSELD-----GYFLDDTEAEKRKQIWEELNAEFLEKEKKR 443
>gi|452839595|gb|EME41534.1| hypothetical protein DOTSEDRAFT_73820 [Dothistroma septosporum
NZE10]
Length = 876
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 143/278 (51%), Gaps = 32/278 (11%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEY-----GA 65
D + C C + + + N E TF +NA G++ + G V RT+ S G
Sbjct: 53 DGLIVCKACYQQVREANIVAEVTFEENAGGRATVQGGTVNDNSRHARTLNSATFRKIGGG 112
Query: 66 SRERLMEKAFDDMRQMKNALN-----IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
R L D + K AL +G + A+ + +A NF+ GRRT++V A
Sbjct: 113 ERNSLA----DAQQTGKKALGEVCRKLGVETNVQTQAESIWVMASNINFSAGRRTDEVVA 168
Query: 121 SCLYLACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES---NVLKQVDPS 176
+CLY ACR QK LL+D + YL INV+ LG VY L + LY+ +ES L +++P
Sbjct: 169 ACLYAACRRQKENQLLLMDIAEYLKINVFRLGEVYKDLGKELYLNNESVGNQNLIELEPL 228
Query: 177 IFLHKFTDRLLPGGNKKVCDTARD---ILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
IF K+ +L G K D ++D I+ M RDWI +GR P+GLCGA + ++A +
Sbjct: 229 IF--KYCQKLQFG--DKTNDVSQDALRIIRRMNRDWIVSGRHPAGLCGACIILAARMNNF 284
Query: 234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ S ++V + + + T+ KR+ EF T S L I DF
Sbjct: 285 QRSVREVVYVSKVADVTIAKRVEEFRRTKSAGLNISDF 322
>gi|407927197|gb|EKG20097.1| Transcription factor TFIIB [Macrophomina phaseolina MS6]
Length = 714
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 149/280 (53%), Gaps = 20/280 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ---SEYGASRERLMEKA 74
D + C CG V+ + + +E TF + ++G + + G +V Q + G+S RL
Sbjct: 50 DGVMVCTSCGNVINESHIVSEVTFGETSSGAATVQGGYVGDEQRHANTMGSSARRLGLGG 109
Query: 75 F-----------DDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
D +R + +AL + D + A Y +A FT GRR + A CL
Sbjct: 110 GDGRSTAESNGQDAVRGLMSALRM-TGDNLESRAMNIYRLAARERFTHGRRPIVIAACCL 168
Query: 124 YLACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES--NVLKQVDPSIFLH 180
Y CR ++ +LLIDF+ + +NV++LG Y +L L+I+D S +V ++P +
Sbjct: 169 YYICRTRQGNKYLLIDFAEKIKLNVFKLGETYKELLGKLFISDPSKRDVYTALEPEPLIK 228
Query: 181 KFTDRLLPG--GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
K+ D+L G G ++V + A IL MKRDW+ GR+P+G+CGA + ++A + + +
Sbjct: 229 KYVDKLEFGEAGGRRVAEDAVKILKRMKRDWMVDGRQPAGVCGACIILAARMNNFRRTVR 288
Query: 239 DIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKEL 278
++V +V + + T+ KRL+EF T SG LT+ +F EL
Sbjct: 289 EVVYVVKVADMTIAKRLVEFRRTQSGQLTVNEFREHFDEL 328
>gi|430813871|emb|CCJ28823.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 452
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 128/460 (27%), Positives = 203/460 (44%), Gaps = 75/460 (16%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA-----------SRERLM 71
C CG V+E++ +E TF + ++G + + G+FV QS SRE+ +
Sbjct: 23 CVSCGNVIEENVIVSEITFGEASSGAAIVQGSFVGADQSHARTNGPYRRQSSLESREQTI 82
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
+ + AL++ E A R++ +AV NF +GRR++ V ASCLY+ CR +
Sbjct: 83 ANGRRRINALAAALHLSERHS--ETAVRYFTLAVTHNFIQGRRSQYVIASCLYIVCRLER 140
Query: 132 KPFLLIDFSNYLN--------------INVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+LIDFS+ L INV+ LG+ +L+L QVL+I L DPS+
Sbjct: 141 TSHMLIDFSDILQVNLILKNIYLIVNKINVFTLGSTFLKLVQVLHIT-----LPFADPSL 195
Query: 178 FLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
++ +F L G KV A ++ M RDW+ TGR+P+GL ++A + + S
Sbjct: 196 YITRFAALLEFGAETHKVATDAIRLVQRMNRDWMQTGRRPAGLL-----IAARMNNFRRS 250
Query: 237 KSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGM 296
++V +V + + T+ KRL EF+ T SG LT++DF + ++ P
Sbjct: 251 VEEVVHVVKVGDLTVRKRLEEFKTTASGDLTVQDF--------RTIWLEQTHDPPSYLQG 302
Query: 297 NEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAE-RERMVKASAEENS 355
+ + +D EF+ E D +E+M+ E
Sbjct: 303 KKKERRQRDIEAM-----------EFLNSKEHEIDILDASTTNYYHNKEKMLPLKLIETG 351
Query: 356 SFERESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDN 415
F E + F+ E E V K+ Q S + T + +
Sbjct: 352 DFVTELNDNFL-------KGEMESVLKDRDIQRMS----------MAIQETKKTGKYCET 394
Query: 416 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 455
SDIDD E++ + +E E K +W E+NREYL Q K
Sbjct: 395 LSDIDDDEINQIILSEPEVLAKTRVWMELNREYLAAQEVK 434
>gi|302886509|ref|XP_003042144.1| hypothetical protein NECHADRAFT_1589 [Nectria haematococca mpVI
77-13-4]
gi|256723053|gb|EEU36431.1| hypothetical protein NECHADRAFT_1589 [Nectria haematococca mpVI
77-13-4]
Length = 670
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 144/265 (54%), Gaps = 18/265 (6%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG++ +D N +E TF +++ G + + G+++ Q+ G S RE+
Sbjct: 70 TCQTCGRIADDSNIVSEITFGESSNGAAVVHGSYIGADQAGVRSMGPAFRRVGGSEDREK 129
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR- 128
+ +A M+ LN+GES ++ + + +A + NF +GR V A CLY ACR
Sbjct: 130 SIREAKSLMQGYAQQLNVGES--LITAGTQVFKLASSANFVQGRTLASVAAVCLYAACRA 187
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
Q +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 188 QPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEF 245
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV +
Sbjct: 246 HQETAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVT 305
Query: 248 EATLMKRLIEFENTDSGSLTIEDFM 272
T+ RL EF+ T+S +++EDF+
Sbjct: 306 NHTIQSRLQEFKVTESSRMSVEDFL 330
>gi|46116324|ref|XP_384180.1| hypothetical protein FG04004.1 [Gibberella zeae PH-1]
Length = 762
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 143/265 (53%), Gaps = 18/265 (6%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG++ +D N E TF ++++G + + G+F+ Q+ G S RE+
Sbjct: 82 TCQTCGRISDDSNIVAEVTFGESSSGAAVVHGSFIGADQAGVRSMGPAFRRVGGSEDREK 141
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LN+ SD +V + + +A + NF +GR V A CLY ACR
Sbjct: 142 SIREAKGLMQGYAQQLNV--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRA 199
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 200 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEF 257
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV +
Sbjct: 258 HQDTAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVT 317
Query: 248 EATLMKRLIEFENTDSGSLTIEDFM 272
T+ RL EF+ T+S +++EDF+
Sbjct: 318 NHTIQNRLQEFKVTESSRMSVEDFL 342
>gi|310801628|gb|EFQ36521.1| Brf1-like TBP-binding domain-containing protein [Glomerella
graminicola M1.001]
Length = 736
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 143/268 (53%), Gaps = 20/268 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEY---GAS--RER 69
C CG+V +D N E F + ++G + + G++V RT+ + G S RE+
Sbjct: 85 VCQTCGRVADDSNIVAEVQFGETSSGAAMVQGSYVAADQAGVRTMGPAFRRVGGSDDREK 144
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LN+ SD V+ A + + +A NF +GR V A CLY ACR
Sbjct: 145 SIREARSLMQGYAQRLNL--SDNTVNTAVQVFKLASQANFVQGRTLVMVAAVCLYTACRT 202
Query: 130 KSKP--FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
+ +P +LID ++ INV++LG + L +V+YI N V P L + +L
Sbjct: 203 E-RPCKIMLIDLADLTQINVFKLGRAFKALNRVVYIF--GNGEAPVFPEDILFRLASKLE 259
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
+V + A ++ MK+DWI GR+PSG+CGA L ++A H + + ++V +V +
Sbjct: 260 FKHMTNRVAEDAVRLVHRMKQDWIVMGRRPSGICGACLLIAARMHNFRRTTREVVYVVKV 319
Query: 247 CEATLMKRLIEFENTDSGSLTIEDFMAR 274
T+ +RL EF T++ +T+EDF+++
Sbjct: 320 TTHTIQERLQEFNVTEASKMTVEDFLSQ 347
>gi|380484171|emb|CCF40167.1| Brf1-like TBP-binding domain-containing protein [Colletotrichum
higginsianum]
Length = 734
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 143/268 (53%), Gaps = 20/268 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNF-------VRTIQSEY---GAS--RER 69
C CG+V +D N E F + ++G + + G++ VRT+ + G S RE+
Sbjct: 87 VCQTCGRVADDSNIVAEVQFGETSSGAAMVQGSYIAADQAGVRTMGPAFRRVGGSDDREK 146
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LN+ SD V+ A + + +A NF +GR V A CLY ACR
Sbjct: 147 SIREARSLMQGYAQRLNL--SDNTVNTAVQVFKLASQANFVQGRTLVMVAAVCLYTACRT 204
Query: 130 KSKP--FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
+ +P +LID ++ INV++LG + L +V+YI N V P L + +L
Sbjct: 205 E-RPCKIMLIDLADLTQINVFKLGRAFKALNRVVYIF--GNGEAPVFPEDILFRLASKLE 261
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
+V + A ++ MK+DWI GR+PSG+CGA L ++A H + + ++V +V +
Sbjct: 262 FKHMTNRVAEDAVRLVQRMKQDWIVMGRRPSGICGACLLIAARMHNFRRTTREVVYVVKV 321
Query: 247 CEATLMKRLIEFENTDSGSLTIEDFMAR 274
T+ +RL EF T++ +T+EDF+++
Sbjct: 322 TTHTIQERLQEFNVTEASKMTVEDFLSQ 349
>gi|401826311|ref|XP_003887249.1| putative transcription initiation factor TFIIIB [Encephalitozoon
hellem ATCC 50504]
gi|392998408|gb|AFM98268.1| putative transcription initiation factor TFIIIB [Encephalitozoon
hellem ATCC 50504]
Length = 395
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 163/323 (50%), Gaps = 41/323 (12%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAG-QSQLSGNFVRTIQSE 62
CS+C+ + C CG V E++ F N G ++ L+G V
Sbjct: 4 CSNCSSSDFAEDTAQGAVYCTTCGMVQEENAIVASLNF--NTEGPKATLNGQIV------ 55
Query: 63 YGASRERLMEKAFDDMRQMKNALN-----IGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
G + D +KN ++ +G + V + R+Y + + N +KG+
Sbjct: 56 -GIDSRNVGTGFVDSSYYIKNTISGICASLGLGIDHVECSFRWYKLLLQYNLSKGKSILY 114
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
++C+Y+ CRQ+ P +L+DFSN L+I+V+++G +L++ +L I + +DPS+
Sbjct: 115 TLSACIYIVCRQEKTPHMLMDFSNALHIDVFKIGKSFLKITSMLGIE-----IPLIDPSL 169
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ +F RL + +V + +++ MKRDWI GR+P+ LCGAAL +++ G + S
Sbjct: 170 YMPRFVSRL-RFESSEVLGLSLRLISRMKRDWIVVGRRPNNLCGAALLIASRIVGEERSI 228
Query: 238 SDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF--------------------MARKKE 277
+I KIVH+ +T+ KRL E +T+S +L+IE+F MA+K+E
Sbjct: 229 YEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNATWIEKEEDPPSVKVKRMEMAKKQE 288
Query: 278 LHEGVAANLPNNGPKVSGMNEVL 300
G + +P + P+ S +E L
Sbjct: 289 CESGSSEMIPYSTPQSSVDSEAL 311
>gi|408395340|gb|EKJ74522.1| hypothetical protein FPSE_05272 [Fusarium pseudograminearum CS3096]
Length = 759
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 143/265 (53%), Gaps = 18/265 (6%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG++ +D N E TF ++++G + + G+F+ Q+ G S RE+
Sbjct: 82 TCQTCGRISDDSNIVAEVTFGESSSGAAVVHGSFIGADQAGVRSMGPAFRRVGGSEDREK 141
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LN+ SD +V + + +A + NF +GR V A CLY ACR
Sbjct: 142 SIREAKGLMQGYAQQLNV--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRA 199
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 200 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEF 257
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV +
Sbjct: 258 HQDTAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVT 317
Query: 248 EATLMKRLIEFENTDSGSLTIEDFM 272
T+ RL EF+ T+S +++EDF+
Sbjct: 318 NHTIQNRLQEFKVTESSRMSVEDFL 342
>gi|346318705|gb|EGX88307.1| Transcription factor TFIIB, putative [Cordyceps militaris CM01]
Length = 722
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 142/272 (52%), Gaps = 18/272 (6%)
Query: 15 RPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYG 64
RP C CG+V +D N E F + ++G + + G+++ Q+ G
Sbjct: 73 RPNVVDGTCQTCGRVADDSNIVAEVQFGETSSGAAMVQGSYIGADQAGVRSMGPAFRRVG 132
Query: 65 AS--RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASC 122
S RE+ + +A M+ LN+ SD +V + + +A NF +GR V A C
Sbjct: 133 GSEDREKSIREARGLMQGYAQQLNV--SDSLVTAGTQVFKLASGANFIQGRTLASVAAVC 190
Query: 123 LYLACRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181
LY ACR + +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +
Sbjct: 191 LYAACRAEPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWR 248
Query: 182 FTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F ++ KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + ++
Sbjct: 249 FATKMEFRQETAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREV 308
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
V IV + T+ RL EF +T+S +++EDF+
Sbjct: 309 VYIVKVTNHTIQNRLSEFNSTESSQMSVEDFL 340
>gi|303389255|ref|XP_003072860.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon intestinalis ATCC 50506]
gi|303302003|gb|ADM11500.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon intestinalis ATCC 50506]
Length = 395
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 165/326 (50%), Gaps = 41/326 (12%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAG-QSQLSGNFVRTI 59
M CS+C+ + C CG V E++ F N G ++ L+G V
Sbjct: 1 MGICSNCSSGDFAEDTAQGAVYCTVCGMVQEENAIVASLNF--NTEGPKATLNGQIV--- 55
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALN-----IGESDEIVHVAKRFYGIAVARNFTKGRR 114
G + D +KN ++ +G + V + R+Y + + N +KG+
Sbjct: 56 ----GMDSRNVGTGFVDSSYYIKNTISGICASLGLGVDHVECSFRWYKLLLQYNLSKGKS 111
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
++C+Y+ CRQ+ P +L+DFSN L+I+V+++G +L++ +L I + +D
Sbjct: 112 ILYTLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKSFLKITNMLGID-----IPLID 166
Query: 175 PSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
PS+++ +F RL + +V + +++ MKRDWI GR+P+ LCGAAL +++ G +
Sbjct: 167 PSLYMPRFVSRL-RFESTEVLGLSLRLISRMKRDWIVVGRRPNNLCGAALLIASRIVGEE 225
Query: 235 FSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF--------------------MAR 274
S +I KIVH+ +T+ KRL E +T+S +L+IE+F MA+
Sbjct: 226 RSIYEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNATWIEKEEDPPAVKMKRMEMAK 285
Query: 275 KKELHEGVAANLPNNGPKVSGMNEVL 300
K+E G + +P + P+ S +E+L
Sbjct: 286 KQECESGSSEVIPYSTPQSSVDSEIL 311
>gi|400595952|gb|EJP63740.1| Brf1-like TBP-binding domain-containing protein [Beauveria bassiana
ARSEF 2860]
Length = 722
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 140/265 (52%), Gaps = 18/265 (6%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG+V +D N E F + ++G + + G+++ Q+ G S RE+
Sbjct: 79 TCQTCGRVADDSNIVAEVQFGETSSGAAMVQGSYIGADQAGVRSMGPAFRRVGGSEDREK 138
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LN+ SD +V + + +A NF +GR V A CLY ACR
Sbjct: 139 SIREARGLMQGYAQQLNV--SDSLVAAGTQVFKLASGANFIQGRTLASVAAVCLYAACRA 196
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 197 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEF 254
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV +
Sbjct: 255 RQETAKVAEDAVRLVKRMSRDWLVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVT 314
Query: 248 EATLMKRLIEFENTDSGSLTIEDFM 272
T+ RL EF +T+S +++EDF+
Sbjct: 315 NHTIQNRLQEFNHTESSQMSVEDFL 339
>gi|342876335|gb|EGU77962.1| hypothetical protein FOXB_11527 [Fusarium oxysporum Fo5176]
Length = 753
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 143/265 (53%), Gaps = 18/265 (6%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG++ +D N E TF ++++G + + G+++ Q+ G S RE+
Sbjct: 82 TCQTCGRISDDSNIVAEVTFGESSSGAAVVHGSYIGADQAGVRSMGPAFRRVGGSEDREK 141
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LN+ SD +V + + +A + NF +GR V A CLY ACR
Sbjct: 142 SIREAKGLMQGYAQQLNV--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRA 199
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 200 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEF 257
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV +
Sbjct: 258 HQDTAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVT 317
Query: 248 EATLMKRLIEFENTDSGSLTIEDFM 272
T+ RL EF+ T+S +++EDF+
Sbjct: 318 NHTIQNRLQEFKVTESSRMSVEDFL 342
>gi|396081366|gb|AFN82983.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon romaleae SJ-2008]
Length = 395
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 164/326 (50%), Gaps = 41/326 (12%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAG-QSQLSGNFVRTI 59
M CS+C+ + C CG V E++ F N G ++ L+G V
Sbjct: 1 MGICSNCSSGDFAEDTAQGAVYCTTCGMVQEENAIVASLNF--NTEGPKATLNGQIV--- 55
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALN-----IGESDEIVHVAKRFYGIAVARNFTKGRR 114
G + D +KN ++ +G + V + R+Y + + N +KG+
Sbjct: 56 ----GIDSRNVGTGFVDSSYYIKNTISGICASLGLGIDHVECSFRWYKLLLQYNLSKGKS 111
Query: 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD 174
++C+Y+ CRQ+ P +L+DFSN L+I+V+++G +L++ +L I + +D
Sbjct: 112 ILYTLSACIYIVCRQEKTPHMLMDFSNALHIDVFKIGKSFLKITTMLGID-----IPLID 166
Query: 175 PSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
PS+++ +F RL + +V + +++ MKRDWI GR+P+ LCGAAL +++ G +
Sbjct: 167 PSLYMPRFVSRL-RFESSEVLGLSLRLISRMKRDWIVVGRRPNNLCGAALLIASRIVGEE 225
Query: 235 FSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF--------------------MAR 274
S +I KIVH+ +T+ KRL E +T+S +L+IE+F MA+
Sbjct: 226 RSIYEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNATWIDKEEDPPSVKLRRMEMAK 285
Query: 275 KKELHEGVAANLPNNGPKVSGMNEVL 300
K+E G +P + P+ S +++L
Sbjct: 286 KQECESGSTETVPYSTPQSSIDSDIL 311
>gi|398408149|ref|XP_003855540.1| hypothetical protein MYCGRDRAFT_37171 [Zymoseptoria tritici IPO323]
gi|339475424|gb|EGP90516.1| hypothetical protein MYCGRDRAFT_37171 [Zymoseptoria tritici IPO323]
Length = 730
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 143/272 (52%), Gaps = 20/272 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTI-----QSEYGA 65
D C C + + N E TF + G++ + G V RT+ + G
Sbjct: 45 DGLTICKHCYTQINESNIVAEVTFEEQTGGRATVQGGTVNDNSRHARTLGAGAYRKVGGG 104
Query: 66 SRERLMEKAFDDMRQMKNAL-NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
R L + R ++ +G +D + A + + +A NF+ GR+T++V A+CLY
Sbjct: 105 ERNTLADIQNAGRRALEQLCPKLGITDNVSVQANQIWTLAANINFSAGRKTDEVVAACLY 164
Query: 125 LACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES---NVLKQVDPSIFLH 180
ACR Q + LL+D + ++INV+ LG VY +C+ LYI +E+ L +++P +H
Sbjct: 165 AACRRQTNNQILLMDIAELVHINVFRLGEVYKDMCKELYINNENIGHQHLIELEP--LIH 222
Query: 181 KFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
K+ ++L K+V + A I+ M RDWI +GR P+GLCGA + ++A + + S +
Sbjct: 223 KYCEKLQFAEKTKQVAEDALKIIKRMNRDWIVSGRHPAGLCGACIILAARMNNFQRSVRE 282
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+V + + + T+ KR+ EF T S SLT++ F
Sbjct: 283 VVYVSKVADVTIAKRIEEFRVTKSASLTVQLF 314
>gi|453083368|gb|EMF11414.1| hypothetical protein SEPMUDRAFT_150357 [Mycosphaerella populorum
SO2202]
Length = 889
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 149/274 (54%), Gaps = 24/274 (8%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEYGASRERL 70
D ++ C C + ++N E TF +NA G++ + G V +T+ S GA R ++
Sbjct: 50 DGKVVCLDCYTEIAENNIVAEITFEENAGGRATVQGGTVNDNSRHAKTLGS--GAYR-KV 106
Query: 71 MEKAFDDMRQMKNA---------LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQAS 121
+ + ++NA +G ++ A++ + +A NF+ GRRT++V A+
Sbjct: 107 GGGERNSLADVQNAGRKALEQLCPKLGILPQVQVQAEQIWVLAANINFSAGRRTDEVVAA 166
Query: 122 CLYLACRQ-KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ--VDPSIF 178
CLY ACR+ K LL+D + L INV+ LG VY +C+ LY+ADE NV Q V+
Sbjct: 167 CLYAACRRRKDNKVLLMDIAELLQINVFRLGEVYKDMCRELYLADE-NVGTQHMVELEPL 225
Query: 179 LHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++K+ D+L K V A I+ M RDWI +GR P+GLCGA + ++A + + +
Sbjct: 226 IYKYCDKLQFAEKTKDVAADALKIIRRMNRDWIVSGRHPAGLCGACIILAARMNNFQRTV 285
Query: 238 SDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
++V + + + T+ KR+ EF T + L++++F
Sbjct: 286 REVVFVSKVADVTIAKRVEEFRRTKASGLSVDNF 319
>gi|322696764|gb|EFY88552.1| hypothetical protein MAC_05446 [Metarhizium acridum CQMa 102]
Length = 742
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 140/265 (52%), Gaps = 18/265 (6%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG+V +D N E F ++++G + + G+F+ Q+ G + RE+
Sbjct: 81 TCQTCGRVADDSNIVAEVQFGESSSGAAVVHGSFIGADQAGVRSMGPAFRRVGGTEDREK 140
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ LN+ ES +V + + +A NF +GR V A CLY ACR
Sbjct: 141 SIREARGLMQGYAQQLNVSES--LVTAGTQVFKLASGANFIQGRTLASVAAVCLYAACRA 198
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 199 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEF 256
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV +
Sbjct: 257 HQETAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVT 316
Query: 248 EATLMKRLIEFENTDSGSLTIEDFM 272
T+ RL EF T+S +++EDF+
Sbjct: 317 NHTIQNRLQEFNVTESSQMSVEDFL 341
>gi|449329122|gb|AGE95396.1| transcription initiation factor tfIII b subunit [Encephalitozoon
cuniculi]
Length = 395
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 148/276 (53%), Gaps = 21/276 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAG-QSQLSGNFVRTIQSE 62
CS+C+ + C CG V E++ F N G ++ L+G V
Sbjct: 4 CSNCSCEDFAEDTAQGAVYCTTCGMVQEENAIVASLNF--NTEGPKATLNGQIV------ 55
Query: 63 YGASRERLMEKAFDDMRQMKNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
G + D +KN + ++G + V + R+Y + + N +KG+
Sbjct: 56 -GIDSRNVGTGFVDSSYYIKNTIGGICASLGLGVDHVECSFRWYKLLLQYNLSKGKSILY 114
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
++C+Y+ CRQ+ P +L+DFSN L+I+V+++G +L++ +L I + +DPS+
Sbjct: 115 TLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKSFLKITNILGID-----IPLIDPSL 169
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ +F RL N+ + + R +++ MKRDWI GR+P+ LCGAAL +++ G + S
Sbjct: 170 YMPRFVSRLRFESNEVLGLSLR-LISRMKRDWIVVGRRPNNLCGAALLIASRIVGEERSI 228
Query: 238 SDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 273
+I KIVH+ +T+ KRL E +T+S +L+IE+F A
Sbjct: 229 YEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNA 264
>gi|358254676|dbj|GAA56126.1| transcription initiation factor brf1 [Clonorchis sinensis]
Length = 729
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 137/253 (54%), Gaps = 22/253 (8%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQ 80
L C CG VL ++ +E FV+ +AG S G FV +R R+
Sbjct: 20 LVCLDCGMVLSENVICSEVEFVETSAGVSAAVGRFV------SDETRRRI--------DT 65
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+ L +G ++I A RFY A+ R T+GR QV ASC+YLA RQ +L+D S
Sbjct: 66 ICGHLRLG--NDIATSAFRFYQSALFRGITRGRGALQVAASCVYLAARQLRVNLMLLDLS 123
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC-DTAR 199
+ + INVY LG Y +L + L+++ + ++DP +++ +F +L G V TA
Sbjct: 124 DAVGINVYVLGHCYTELRRRLHLS-----IPEMDPCLYIERFASQLEFGDKMPVVATTAM 178
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259
+L MK+DW+TTGR+PSGL AAL V+A H ++ D+ +I I + T KRL EF
Sbjct: 179 RLLQRMKKDWLTTGRRPSGLAAAALLVAARIHEFNRNEEDVARIARISQQTARKRLEEFG 238
Query: 260 NTDSGSLTIEDFM 272
T + +L+IEDF
Sbjct: 239 RTPTSALSIEDFF 251
>gi|393904948|gb|EFO21323.2| BRF1 protein [Loa loa]
Length = 859
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 143/263 (54%), Gaps = 19/263 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGASRERLM 71
C CG VLE+ ++ F +NA G L G F+ + + + SRE
Sbjct: 24 CMGCGTVLEESTIVSDVAFQENAGGGHSLVGQFISKERGQPTNLSGVPGLSHQESREITY 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
K + ++ + L I + V+ A F+ + V+RNFT+GR V A+CLY+ CR ++
Sbjct: 84 YKGRKLIEEIASQLRINQ--HCVNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLEN 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 191
LL+DFS+ +NV++LG L + L I L DP +++ +F L G
Sbjct: 142 TAHLLLDFSDITQVNVFDLGRTLNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGTK 196
Query: 192 KK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 250
+K V A ++ MKRDWI TGR+P+GLCGAAL ++A + + +D+V++VHI EA
Sbjct: 197 QKEVVSLATRLVQRMKRDWIATGRRPTGLCGAALLLAARCYNFNRTVADVVRVVHISEAV 256
Query: 251 LMKRLIEFENTDSGSLTIEDFMA 273
+ KRL EF T S +LTI++F +
Sbjct: 257 VKKRLDEFGQTPSSTLTIDEFTS 279
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 27/144 (18%)
Query: 401 PGVDATTEASDGSD--NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAA 458
P ++ ++E + ++ + IDD E+D Y+ EEE K W ++N E+L+E +
Sbjct: 408 PIIETSSEKLNSNEELDLEGIDDEEIDTYILTEEEVDLKTRFWMKLNGEHLKEMERRRRE 467
Query: 459 AAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEA 518
+ + S K++++ K A TA EA
Sbjct: 468 REEEEREKDNSI-------------------------KKRRRTNGIRKKEPIVAATAQEA 502
Query: 519 TRRMLTKKRLSSKINYDVLEKLFD 542
+++ +K+LS+KINYD+L ++ D
Sbjct: 503 MEKVIHEKKLSNKINYDILREIED 526
>gi|312080782|ref|XP_003142747.1| BRF1 protein [Loa loa]
Length = 866
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 143/263 (54%), Gaps = 19/263 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGASRERLM 71
C CG VLE+ ++ F +NA G L G F+ + + + SRE
Sbjct: 24 CMGCGTVLEESTIVSDVAFQENAGGGHSLVGQFISKERGQPTNLSGVPGLSHQESREITY 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
K + ++ + L I + V+ A F+ + V+RNFT+GR V A+CLY+ CR ++
Sbjct: 84 YKGRKLIEEIASQLRINQ--HCVNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLEN 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 191
LL+DFS+ +NV++LG L + L I L DP +++ +F L G
Sbjct: 142 TAHLLLDFSDITQVNVFDLGRTLNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGTK 196
Query: 192 KK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 250
+K V A ++ MKRDWI TGR+P+GLCGAAL ++A + + +D+V++VHI EA
Sbjct: 197 QKEVVSLATRLVQRMKRDWIATGRRPTGLCGAALLLAARCYNFNRTVADVVRVVHISEAV 256
Query: 251 LMKRLIEFENTDSGSLTIEDFMA 273
+ KRL EF T S +LTI++F +
Sbjct: 257 VKKRLDEFGQTPSSTLTIDEFTS 279
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 27/144 (18%)
Query: 401 PGVDATTEASDGSD--NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAA 458
P ++ ++E + ++ + IDD E+D Y+ EEE K W ++N E+L+E +
Sbjct: 408 PIIETSSEKLNSNEELDLEGIDDEEIDTYILTEEEVDLKTRFWMKLNGEHLKEMERRRRE 467
Query: 459 AAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEA 518
+ + S K++++ K A TA EA
Sbjct: 468 REEEEREKDNSI-------------------------KKRRRTNGIRKKEPIVAATAQEA 502
Query: 519 TRRMLTKKRLSSKINYDVLEKLFD 542
+++ +K+LS+KINYD+L ++ D
Sbjct: 503 MEKVIHEKKLSNKINYDILREIED 526
>gi|449296571|gb|EMC92590.1| hypothetical protein BAUCODRAFT_77565 [Baudoinia compniacensis UAMH
10762]
Length = 809
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 141/274 (51%), Gaps = 22/274 (8%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSE-------Y 63
D C CG L D N + TF ++A G + + G F+ RT +
Sbjct: 46 DGMKICLSCGTQLADVNIVADVTFEEDARGAATVQGGFIGENARHARTFGPKAFRRIGGV 105
Query: 64 GASRERLME---KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
G R E KA + + LNI +D+ A+R +G+A NFT GR T++V
Sbjct: 106 GGERNSTQEAENKARRTLASICPRLNI--TDDYSIQAQRLFGLAARLNFTSGRSTDEVVG 163
Query: 121 SCLYLACRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ-VDPSIF 178
+CL+ ACR+ + LL+D ++ +INV+ LG VY LC+ L E+ ++Q VD
Sbjct: 164 ACLFAACRKNPQNSVLLMDIADIFHINVFRLGEVYKNLCKDLCYHKENLPIQQLVDVEPL 223
Query: 179 LHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+ K+ +L G + V + A IL M RDW+ TGR P+G+CGA + ++A + + S
Sbjct: 224 IQKYCRKLEFGTRTRDVAEDAVKILKRMNRDWMVTGRHPAGICGACIILAARMNNFRRSV 283
Query: 238 SDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
++V + + + T+ KR+ EF T + +L+++ F
Sbjct: 284 REVVYVAKVADMTIAKRIEEFRRTKASTLSVDQF 317
>gi|19173589|ref|NP_597392.1| TRANSCRIPTION INITIATION FACTOR TFIII B SUBUNIT (70kDa)
[Encephalitozoon cuniculi GB-M1]
gi|19170795|emb|CAD26569.1| TRANSCRIPTION INITIATION FACTOR TFIII B SUBUNIT (70kDa)
[Encephalitozoon cuniculi GB-M1]
Length = 395
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 148/276 (53%), Gaps = 21/276 (7%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAG-QSQLSGNFVRTIQSE 62
CS+C+ + C CG V E++ F N G ++ L+G V
Sbjct: 4 CSNCSCEDFAEDTAQGAVYCTTCGMVQEENAIVASLNF--NTEGPKATLNGQIV------ 55
Query: 63 YGASRERLMEKAFDDMRQMKNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
G + D +KN + ++G + V + R+Y + + N +KG+
Sbjct: 56 -GIDSRNVGTGFVDSSYYIKNTIGGICASLGLGVDHVECSFRWYKLLLQYNLSKGKSILY 114
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
++C+Y+ CRQ+ P +L+DFSN L+I+V+++G +L++ +L I + +DPS+
Sbjct: 115 TLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKSFLKITNMLGID-----IPLIDPSL 169
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ +F RL N+ + + R +++ MKRDWI GR+P+ LCGAAL +++ G + S
Sbjct: 170 YMPRFVSRLRFESNEVLGLSLR-LISRMKRDWIVVGRRPNNLCGAALLIASRIVGEERSI 228
Query: 238 SDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 273
+I KIVH+ +T+ KRL E +T+S +L+IE+F A
Sbjct: 229 YEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNA 264
>gi|402585748|gb|EJW79687.1| transcription factor TFIIB repeat family protein, partial
[Wuchereria bancrofti]
Length = 426
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 143/263 (54%), Gaps = 19/263 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGASRERLM 71
C CG VLE+ ++ F +NA G L G F+ + + + SRE
Sbjct: 24 CMGCGTVLEESTIVSDVAFQENAGGGHSLVGQFISKERGQLTNLSGVPGLSHQESREITY 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
K + ++ + L I + V+ A F+ + V+RNFT+GR V A+CLY+ CR ++
Sbjct: 84 YKGRKLIEEIASQLRINQ--HCVNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLEN 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 191
LL+DFS+ +NV++LG L + L I L DP +++ +F L G
Sbjct: 142 TAHLLLDFSDITQVNVFDLGRTLNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGAK 196
Query: 192 KK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 250
+K V A ++ MKRDWI TGR+P+GLCGAAL ++A + + +D+V++VHI EA
Sbjct: 197 QKEVVSLATRLVQRMKRDWIATGRRPTGLCGAALLLAARCYNFNRTVADVVRVVHISEAV 256
Query: 251 LMKRLIEFENTDSGSLTIEDFMA 273
+ KRL EF T S +LTI++F +
Sbjct: 257 VKKRLDEFGQTPSSTLTIDEFTS 279
>gi|269860898|ref|XP_002650166.1| transcription factor IIIB subunit [Enterocytozoon bieneusi H348]
gi|220066389|gb|EED43872.1| transcription factor IIIB subunit [Enterocytozoon bieneusi H348]
Length = 391
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 140/273 (51%), Gaps = 12/273 (4%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C +C +CC+ CG + E++ F + + + + G V
Sbjct: 6 CINCGSMAIQTDTTRGIICCEDCGMIQEENMIINTIQFDTSNSNKISMQGKVVNIENKNI 65
Query: 64 GASRERLMEKAFDDMRQMKNA-----LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
G + ++ ++ +KN LN S+ +A ++Y + +A N +KG+
Sbjct: 66 GT---KYIDSSYYIKTTIKNICSKLCLNSKHSE----IAFKWYKLCLANNLSKGKSILYT 118
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
++C+Y++CRQ++ P LLIDFSN L I++Y++G ++L++ + S + +D S++
Sbjct: 119 LSACIYISCRQEATPHLLIDFSNVLRIDMYQIGKIFLKIRNTFGLEFNSFDIGGIDMSLY 178
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
LH+F +L +K++ + IL MK+DWI GRKP+ CGAA+ +++ G S
Sbjct: 179 LHRFVSQLKFKNSKEIILLSTRILNRMKKDWIMEGRKPNNSCGAAILLASRILGEPKDIS 238
Query: 239 DIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+I KIVH +T+ KRL E T+S L I F
Sbjct: 239 EIAKIVHAAPSTISKRLREISETESAMLNITKF 271
>gi|160331383|ref|XP_001712399.1| tfIIB-brf [Hemiselmis andersenii]
gi|159765847|gb|ABW98074.1| tfIIB-brf [Hemiselmis andersenii]
Length = 408
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 143/274 (52%), Gaps = 16/274 (5%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C C + ++ C CG +LE++ + E TF L+G FVR
Sbjct: 3 CIKCGGGEINFNFTEGKIICKFCGLLLEENISNPEITFEGKDKKNFSLNGQFVRNSNINS 62
Query: 64 GASRER----LMEKAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+ + + ++ A + Q+ ++L + S DE A +F+ +A R F G++ +
Sbjct: 63 LSYKNKFNDLVLSSAKRRINQISHSLKLKGSFQDE----AFKFFILATQRGFINGQKLQN 118
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+ S LY CRQK LLIDFS+ I ++G+V+L+ +I D + +DPS+
Sbjct: 119 LCVSSLYTVCRQKKTHHLLIDFSDITQIQTNKIGSVFLK-----FIRDLKINIPVIDPSL 173
Query: 178 FLHKFTDRLLPGGNKKVCD-TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
++ +F RL G K+ +A ++A MKR+W++TGR+PSGLCGAA+ ++ HGLK +
Sbjct: 174 YIQRFVSRLQLGNKTKLVSMSALRLIARMKREWVSTGRRPSGLCGAAILLATKMHGLKKT 233
Query: 237 KSDIVKIVHICEATLMKRLIEFENTDSGSLTIED 270
+ +I IV I + + RL E T +LTI++
Sbjct: 234 QKEISSIVRIGDFAIRSRLREINKTSMSNLTIKE 267
>gi|322703408|gb|EFY95017.1| hypothetical protein MAA_09466 [Metarhizium anisopliae ARSEF 23]
Length = 738
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 140/265 (52%), Gaps = 18/265 (6%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------EYGAS--RER 69
C CG+V +D N E F ++++G + + G+F+ Q+ G + RE+
Sbjct: 80 TCQTCGRVADDSNIVAEVQFGESSSGAAVVHGSFIGADQAGVRSMGPAFRRVGGTEDREK 139
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ +A M+ L++ ES +V + + +A NF +GR V A CLY ACR
Sbjct: 140 SIREARGLMQGYAQQLSVSES--LVTAGTQVFKLASGANFIQGRTLASVAAVCLYAACRA 197
Query: 130 KSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 187
+ +LID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++
Sbjct: 198 EPPCKVMLIDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEF 255
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
KV + A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV +
Sbjct: 256 HQETAKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVT 315
Query: 248 EATLMKRLIEFENTDSGSLTIEDFM 272
T+ RL EF T+S +++EDF+
Sbjct: 316 NHTIQNRLQEFNITESSQMSVEDFL 340
>gi|320170859|gb|EFW47758.1| BRF1 protein [Capsaspora owczarzaki ATCC 30864]
Length = 580
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 111/177 (62%), Gaps = 6/177 (3%)
Query: 96 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 155
+A + AV RNF +GR+T V A+C+YL CR P +++DFS+ +++NV+ LG Y
Sbjct: 1 MAHSVFREAVDRNFIQGRKTLIVVAACVYLVCRHDQSPIMMLDFSDAISVNVFVLGNTYS 60
Query: 156 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGR 214
QLC+VL+ + VDPS+ + +F L G + +V TA ++ MKRDWI GR
Sbjct: 61 QLCKVLH-----KTVPVVDPSLLILRFVSMLEFGSKENEVSRTATRLVQRMKRDWILVGR 115
Query: 215 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+P+GLC AA+ ++A HG S+ +I+ +V IC+ TL +RL EFE T SG LT +F
Sbjct: 116 RPAGLCAAAILLAARMHGFSRSQREIIHVVRICDMTLRRRLEEFEETPSGQLTTVEF 172
>gi|256084250|ref|XP_002578344.1| transcription initiation factor brf1 [Schistosoma mansoni]
gi|353229135|emb|CCD75306.1| putative transcription initiation factor brf1 [Schistosoma mansoni]
Length = 770
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 138/258 (53%), Gaps = 10/258 (3%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV--RTIQSEYGASRERLMEKAFD 76
+ L C CG VL ++ S+E FV+ + GQ G FV + + SR+ KA
Sbjct: 18 ADLICLDCGMVLGENVISSEVEFVETSTGQCAAVGRFVSDESQAGNFKESRQATENKARR 77
Query: 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 136
+ + L +G ++ A R+Y A+ R T+GR V A C+YLA RQ +L
Sbjct: 78 RIDTICGQLRLG--NDTAASAFRYYQSALFRGLTRGRSAFTVAAGCIYLAARQLRVNLML 135
Query: 137 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVC 195
+D S+ + +NVY LG VY L + L +A + ++DP I++ +F +L G V
Sbjct: 136 LDLSDAVGVNVYVLGRVYADLKKRLNLA-----IPEMDPCIYIDRFASQLEFGDKVSTVA 190
Query: 196 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 255
TA +L MK+DWI TGR+PSGL AAL V+A H ++ D+ +I I ++T KRL
Sbjct: 191 TTAMRLLQRMKKDWIATGRRPSGLAAAALLVAARIHEFNRTEEDVARIARISQSTARKRL 250
Query: 256 IEFENTDSGSLTIEDFMA 273
EF T S +L+IE F +
Sbjct: 251 EEFGRTPSSALSIEAFFS 268
>gi|324516790|gb|ADY46635.1| Transcription factor IIIB 90 kDa subunit, partial [Ascaris suum]
Length = 339
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 141/261 (54%), Gaps = 19/261 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGASRERLM 71
C CG VLE+ ++ T+ + + G S L G FV +++ + SRE
Sbjct: 24 CMNCGTVLEESTIVSDVTYQERSGGGSTLVGQFVSHDRAQRHTLSGVPGLMHQESREVTY 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
K + + + L I + + A F+ + V+RNFT+GR V A+CLY+ CR ++
Sbjct: 84 MKGKKLIEGIASQLRINQ--HCIDTAYNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLEN 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-G 190
LL+DFS+ +NV+ELG L + L I L DP +++ +F L G
Sbjct: 142 TAHLLLDFSDVTQVNVFELGRTLNFLARSLKIN-----LPTTDPCLYILRFAVLLEFGEK 196
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 250
K+V A ++ MKRDWI TGR+P+GLCGAAL ++A + + DIV++VHI EA
Sbjct: 197 EKEVVSLATRLVQRMKRDWIATGRRPTGLCGAALLLAARCYNFNRTIGDIVRVVHISEAV 256
Query: 251 LMKRLIEFENTDSGSLTIEDF 271
+ KRL EF T S SLTI++F
Sbjct: 257 VRKRLDEFGKTPSSSLTIDEF 277
>gi|320589780|gb|EFX02236.1| transcription factor tfiiib complex subunit [Grosmannia clavigera
kw1407]
Length = 829
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 140/273 (51%), Gaps = 25/273 (9%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----------------RTIQSEYGAS 66
C CG+V +D N E TF +N+ G + + G+F+ R + +
Sbjct: 91 CRSCGRVSDDSNIVAEVTFGENSMGAAVVQGSFLSHDQGGVRPMAGIGHRRVAGNGSAEA 150
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RER + +A M + LNI E V V ++Y +A + NF +GR+ + V A CLY A
Sbjct: 151 RERTLREAKMLMTGYAHQLNIPE--HTVTVGFQYYKLASSANFVQGRKIQNVVAVCLYAA 208
Query: 127 CRQKSKP----FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF 182
CR+ ++ +LID ++ + V+ LG + +L Q + +A V+ IF +F
Sbjct: 209 CRKSTQANPCKIMLIDLADLVKEEVFFLGRTFKKLLQTIDVAARDVQPIYVEDLIF--RF 266
Query: 183 TDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIV 241
+L KV +TA ++ M RDW+ GR+P+G+CGA L ++A + + + ++V
Sbjct: 267 AAKLEFDTMTNKVAETAVRLVQRMDRDWMVMGRRPAGICGACLIMAARMYNFRRTVREVV 326
Query: 242 KIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274
I + ATL RL EF+ S +T+E+F+A+
Sbjct: 327 YIAKVTMATLQMRLDEFKELPSAKMTVEEFLAQ 359
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 420 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 479
DD EV L +E E K+ IW NR YL + +E A
Sbjct: 659 DDPEVQFCLLSEAEAAAKEKIWMNENRAYLRMRQEREFRAK------------------- 699
Query: 480 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 539
AAA ++R+ ++ + E + S PA T EA + ++ S +INYD + +
Sbjct: 700 ----MAAANGTKKQTRRRLKKPKIGEGQTS-PATTPGEAAVEAMERRGFSKRINYDAMRR 754
Query: 540 LFD 542
+ D
Sbjct: 755 MLD 757
>gi|353234355|emb|CCA66381.1| related to BRF1-TFIIIB subunit, 70 kD [Piriformospora indica DSM
11827]
Length = 632
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 9/198 (4%)
Query: 91 DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 150
D ++ A+R +A +FTKGR E + A CLY+ C ++ +LIDF++ L INVY L
Sbjct: 104 DSVISTAERHLTLAYQYSFTKGRHIEHIIAVCLYMGCLEQKTSHMLIDFADILRINVYAL 163
Query: 151 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDW 209
G+ YL+ + L ++PSIF+ +F L G + +KV D A I K DW
Sbjct: 164 GSTYLKWLRTLGWKP-----PLLEPSIFITRFVALLEFGEDERKVADDANRIATRFKDDW 218
Query: 210 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIE 269
I GR+ +G+CGAA+Y++A + + S +I+++V I + T++KRL EF T S +LT+
Sbjct: 219 IHEGRRTAGICGAAIYLAAQMNNYRRSIQEIMQVVKIADTTIIKRLEEFSATASANLTVG 278
Query: 270 DFMARKKELHEGVAANLP 287
DF + H AA+ P
Sbjct: 279 DFRVTE---HPTEAADPP 293
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 30/132 (22%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D+ + +D+ E+D Y+ E+E ++ +W E+N +YL AAK + + +K
Sbjct: 477 DDLTGLDEEELDAYICGEDEAQMRERVWTELNLDYLRRLAAKRIRDQSGEDPRPKKHKRK 536
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR-LSSKI 532
+ Q+ P +TA E+ R M R S +I
Sbjct: 537 SKPKQSFT-----------------------------PGKTAFESVRAMAQGNRTFSKRI 567
Query: 533 NYDVLEKLFDDS 544
NY++L++ FDD+
Sbjct: 568 NYNLLKETFDDN 579
>gi|226289115|gb|EEH44627.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 776
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 138
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 112 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 169
Query: 139 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 197
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 170 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGTSMMQVASE 229
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 257
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 230 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 289
Query: 258 FENTDSGSLTIEDF 271
F+ T+SG LT++ F
Sbjct: 290 FKATESGELTVDQF 303
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 421 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 480
D EV L + E K+ IW N++YL Q AK A K AL A
Sbjct: 466 DPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL-------------A 507
Query: 481 QELAAAAAAAVAKSRKEKQQKRAAEA--------------KNSGPAQTALEATRRMLTKK 526
+E VA +++++ R + A T EA R+ML K+
Sbjct: 508 EEEELVNGRRVANRPRKRRKGRMGDVGYLGEGNGEGGEGEGGGTRASTPAEAMRKMLEKR 567
Query: 527 RLSSKINYDVLEKLFDD 543
S KINY +LE++++D
Sbjct: 568 GFSKKINYRLLEEMYED 584
>gi|330038667|ref|XP_003239664.1| TFIIB related factor hBRF [Cryptomonas paramecium]
gi|327206588|gb|AEA38766.1| TFIIB related factor hBRF [Cryptomonas paramecium]
Length = 385
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 143/275 (52%), Gaps = 23/275 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C+ C ++ ++ +S+ C CG ++E+++ +E N + L N ++ +
Sbjct: 3 CNKCNKNSIDYQFINSKTLCKSCGTMVEEYHLISE-----NYSDCLNLKNNKIKNFLQKK 57
Query: 64 GASRERLMEKA-------FDDMRQMKNALNIGESDEIVH-VAKRFYGIAVARNFTKGRRT 115
+S L E + R++ +N+ + D A R + R + +
Sbjct: 58 TSSS--LFETSNLADIIPLSAKRKIAQIVNLLKLDSTFQEYAYRLFLFVFQRGIIRKYKL 115
Query: 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDP 175
C+Y+ CR K P+LLIDFS + + +LGA++L++ + D + L +DP
Sbjct: 116 LITCICCVYVVCRYKKAPYLLIDFSEIVQTQLNKLGAIFLKI-----VRDLNIFLPIIDP 170
Query: 176 SIFLHKFTDRLLPGGNKK--VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
S+F+HKF L GNK + TA +++ MKRDWI+TGRKPSGLCGAAL +S+ HGL
Sbjct: 171 SLFVHKFATNL-QFGNKTNAITKTALRLVSKMKRDWISTGRKPSGLCGAALLISSCMHGL 229
Query: 234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 268
K SK +I ++V I + TL RL E + T +L I
Sbjct: 230 KRSKKEIEEVVKIGDFTLGSRLREIDKTLLSNLNI 264
>gi|452988988|gb|EME88743.1| hypothetical protein MYCFIDRAFT_107563, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 654
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 142/275 (51%), Gaps = 26/275 (9%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEY-----GA 65
+ QL C C + + + ++ TF A G++ + G V RT+ + G
Sbjct: 27 EGQLICKNCYTQVSESDIVSDITFADAANGKATVQGGTVSDNSRHARTLGAGAFHKVGGG 86
Query: 66 SRERLME---KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASC 122
R L + + + L I E+ + A + + +A NF+ GR+T++V A+C
Sbjct: 87 ERNTLADIQHAGKKALEALTPKLPIEET--VAMQANQIWTLAANINFSAGRKTDEVVAAC 144
Query: 123 LYLACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ--VDPSIFL 179
LY ACR QK LL+D + + INV+ LG VY +C+ LY +ES V +Q VD +
Sbjct: 145 LYAACRRQKQNKVLLMDIAELVKINVFRLGEVYKDMCRELYFNNES-VGQQHLVDLEPLI 203
Query: 180 HKFTDRLLPGGNKKVCDTARD---ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
+K+ D+L G K D A D I+ M RDWI +GR P+GLCGA + ++A + + +
Sbjct: 204 YKYCDKLQFGS--KTQDVAADALKIIKRMNRDWIVSGRHPAGLCGACIILAARMNNFQRT 261
Query: 237 KSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
++V + + + T+ KR+ EF T S LT+E F
Sbjct: 262 VREVVFVSKVADITIAKRVEEFRRTKSAGLTVEQF 296
>gi|6634765|gb|AAF19745.1|AC009917_4 Contains a Transcription factor TFIIB repeat PF|00382 [Arabidopsis
thaliana]
Length = 294
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 85/113 (75%), Gaps = 1/113 (0%)
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 218
+LY+ + VDPS F+ +F+++LL G NK+V +TA I+ASMK +W+ TGRKPSG
Sbjct: 1 MLYLTENRKYENLVDPSTFIPRFSNKLLKGAHNKQVVETATHIIASMKSNWMQTGRKPSG 60
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+CGAALY +AL+HG+K SK+DI IV+ICEATL KRLIEF NT++ S T ++
Sbjct: 61 ICGAALYTAALSHGIKCSKTDITNIVYICEATLTKRLIEFGNTEAASFTADEL 113
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 94/215 (43%), Gaps = 70/215 (32%)
Query: 331 GGADPPAFQVAERERMV-KASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTA 389
G+DPP+FQ AE+ERM KAS EEN DK Q+
Sbjct: 114 SGSDPPSFQRAEKERMEEKASTEEN---------------DKQQN--------------- 143
Query: 390 SNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYL 449
SD S SD+DD E+D Y N +E H +II++ N Y
Sbjct: 144 --------------------SDESSTLSDLDDGELDCYFRNPKEVHLVEIIFDHENPGYD 183
Query: 450 EEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS 509
E++AA A A EAS AA AKSRK+K+Q+RA E KN+
Sbjct: 184 EKEAAALNACNNASNLFEAS------------------KAAAAKSRKDKRQQRAEEEKNA 225
Query: 510 GPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 544
P TA+EA M+ +K+ N D LE+L D S
Sbjct: 226 PPPATAMEAVDSMVKRKKFPD-TNCDYLEELLDTS 259
>gi|118401704|ref|XP_001033172.1| Transcription factor TFIIB repeat family protein [Tetrahymena
thermophila]
gi|89287519|gb|EAR85509.1| Transcription factor TFIIB repeat family protein [Tetrahymena
thermophila SB210]
Length = 582
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 133/490 (27%), Positives = 208/490 (42%), Gaps = 88/490 (17%)
Query: 4 CSSCARHVTGHRPYD------SQLCCDRCGKVLEDHNFSTEATFVKNAA-GQSQLSGNFV 56
C C GH YD Q C CG V+ ++ F + F GQ NF
Sbjct: 14 CKKC-----GHVNYDLDGDEADQQKCRNCGFVMYENCFESGIQFTDTKIDGQLHDMSNFG 68
Query: 57 R-----------------TIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
R I+SEY ER+ E +R MK A
Sbjct: 69 RDNTKYAEECIATMIRDLKIKSEYPDYLERIGETP---LRIMKFAYK------------- 112
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
A G A+ LY+A R + PFLL+DFS L IN+++L Y +L +
Sbjct: 113 ------AYFLDHGSNIHHYSAAALYIALRFQKAPFLLMDFSEKLCINLFKLARCYRKLAK 166
Query: 160 VLYIADESN-VLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKP 216
L + + N L +DPSI++ +F ++L +K +V +TA +L MK DW++ GR+P
Sbjct: 167 FLNVTLKLNERLPSIDPSIYIPRFC-KMLEFNDKVDQVKETAIKLLKRMKLDWMSHGRRP 225
Query: 217 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF----- 271
S LCGAA+ ++A HG K + S++ K+V++CE TL KRL EF+ TD LT E F
Sbjct: 226 SSLCGAAILIAARMHGFKRTTSEVCKVVYVCEETLRKRLEEFKETDVAKLTREKFDEIQD 285
Query: 272 ---MARKKELHEGVAA------NLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEF 322
M R+++ + A L P +E+ + +D + +S E
Sbjct: 286 IELMGRERDPPAFIKALKNQQETLKKIKPNEENDDEINKQLEDAANIIETQV-KSTSNEG 344
Query: 323 MTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPK 382
+++ E D E E + S ++N +++ P E ER K
Sbjct: 345 QQVNQDYEMSDDISIGDDEEDEG--ENSKQQNGEEQKKQLKPL---------SESERQVK 393
Query: 383 NCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWE 442
+ D + ++ + + ++ SD+ + +V+ ++ EE K IIW
Sbjct: 394 TLVKKE-------DAKQIGIINENGYSLNVREDLSDMSEEDVNQFILTNEEHTVKSIIWH 446
Query: 443 EMNREYLEEQ 452
MN +L EQ
Sbjct: 447 SMNETWLREQ 456
>gi|384496736|gb|EIE87227.1| hypothetical protein RO3G_11938 [Rhizopus delemar RA 99-880]
Length = 582
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 131/271 (48%), Gaps = 50/271 (18%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C++C + + + C CG VLE++ E TF + A G++ L G+F
Sbjct: 3 CNNCGSNKSEADAASGTVYCVDCGTVLEENTIVAEVTFGETAGGKAILQGSF-------- 54
Query: 64 GASRERLMEKAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQAS 121
A D RQ +L G + +R+Y +AV FT+GR++E V A
Sbjct: 55 ----------AGDSGRQKIASLAHGLRLPERYREAGQRYYNLAVVNRFTRGRKSEHVAA- 103
Query: 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181
+NV+ LGA +L+LC+VL + +L VDPS ++ +
Sbjct: 104 -----------------------VNVFTLGATFLKLCRVLNL-----ILPHVDPSFYISR 135
Query: 182 FTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F L G ++V A I M RDWI TGR+P+G+CGA L ++A +G + + ++
Sbjct: 136 FAVALDFGDYTQRVAQDAVRIAQRMDRDWIVTGRRPAGICGACLLIAARMNGFRRTLREM 195
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ +V + E T+ KRL EF T+S L+ +DF
Sbjct: 196 IYVVKVAEVTIQKRLNEFNQTESAQLSAQDF 226
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 30/128 (23%)
Query: 415 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 474
N SD+D E++ + EEE K +W N+EYLEE A + + K
Sbjct: 395 NLSDVDCDEIEAMILTEEEVALKTKLWYNANKEYLEEMAVRRLVEKDKGTGKDKRTKG-- 452
Query: 475 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 534
SRK+KQQ PA T EA +++L K+LS KIN
Sbjct: 453 -------------------SRKKKQQV---------PASTPAEAAKQLLATKKLSKKINQ 484
Query: 535 DVLEKLFD 542
V + +F+
Sbjct: 485 AVFDDMFE 492
>gi|440638775|gb|ELR08694.1| hypothetical protein GMDG_03376 [Geomyces destructans 20631-21]
Length = 693
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 143/269 (53%), Gaps = 21/269 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----------RTIQSEYGAS--RER 69
C CG ++E+ +E F ++++G + + G+FV Q G + RE+
Sbjct: 59 CKTCGTIVEESTIVSEIQFGESSSGAAVVQGSFVGAGSGAAKSMGPAFQRAGGGTEDREK 118
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ + M+ I ES +++ + + +A NF +GRR V A CLY A R
Sbjct: 119 TLREGKRIMQGFAGEHKIPES--VLNSGVQIFKLAAMNNFIQGRRMNTVAAVCLYTAAR- 175
Query: 130 KSKP--FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
K +P +LIDF++ +NV++LG + L Q + I+ ++ + V P +++F +L
Sbjct: 176 KERPCRVMLIDFADSCGVNVFKLGHTFKALHQKISIS--ADGIMPVLPEDLIYRFATKLE 233
Query: 188 PGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G + KV ++A ++ M DW+ GR+PSG+CGA L ++A H + + ++V IV +
Sbjct: 234 FGQDTTKVAESAVRLVQRMSLDWMVMGRRPSGICGACLILAARMHNFRRTVKEVVYIVKV 293
Query: 247 CEATLMKRLIEFENTDSGSLTIEDFMARK 275
AT+ KRL EF+ T S LT+E F++ +
Sbjct: 294 TTATIQKRLEEFKVTASSDLTVEQFLSNQ 322
Score = 42.0 bits (97), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 28/146 (19%)
Query: 397 HTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKE 456
+ + P V AS F+D D EV L +E E K+ IW N+++L +QA K
Sbjct: 522 YAQAPQVSIPMTASVDESEFAD--DPEVANCLLSEAEAAIKEHIWVNANKDWLRDQAVKL 579
Query: 457 AAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL 516
A A +A V + R + Q RAA S PA+ A+
Sbjct: 580 YNQKIADKAPKARRNR------------------VKRPRIGEGQTRAA----SSPAEAAV 617
Query: 517 EATRRMLTKKRLSSKINYDVLEKLFD 542
E +L ++ S +INYD + +F+
Sbjct: 618 E----VLKERTWSKRINYDAIRGIFE 639
>gi|123472770|ref|XP_001319577.1| Transcription factor TFIIB repeat family protein [Trichomonas
vaginalis G3]
gi|121902363|gb|EAY07354.1| Transcription factor TFIIB repeat family protein [Trichomonas
vaginalis G3]
Length = 409
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 133/260 (51%), Gaps = 24/260 (9%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV---------RTIQSEYGASRERLMEK 73
C CG +L++ E +F+ NA G + +SG FV + ++ ++
Sbjct: 24 CSACGLILQEQALVNELSFIDNAHGAATVSGQFVPSSGMSGMGGGVSTQTVTEGLNKIDA 83
Query: 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSK 132
D++ ++ S + V +A R Y IAV FT+GR E V A+ +Y+A R +S
Sbjct: 84 ICDNLPKL--------SQDAVELAHRIYQIAVKHRFTRGRTIEIVSAAAVYVAIRVNRSS 135
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN- 191
+LL D + +++ +YEL A L+L + + L +DP +++ +F + L G N
Sbjct: 136 GYLLDDVAEHVSCGIYELAATALRLAHAV-----NQPLPTIDPVLYITRFLEELNLGRNL 190
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
K V DTA I+ + RDWI TGRKPSG+ G A+ ++ H + SK I +I +C +T+
Sbjct: 191 KAVHDTAIHIVHRLDRDWIQTGRKPSGIVGTAIMIACQIHHIPISKERIKEIARVCTSTI 250
Query: 252 MKRLIEFENTDSGSLTIEDF 271
KRL E T+ +I+
Sbjct: 251 NKRLKEISETELARESIDQL 270
>gi|324502344|gb|ADY41032.1| Transcription factor IIIB 90 kDa subunit [Ascaris suum]
Length = 1028
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 136/261 (52%), Gaps = 19/261 (7%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEYGASRERLMEKAF 75
C +CG VLE+ + T+ + + S L G F+ T G + E +
Sbjct: 24 CVKCGMVLEESAIVLDVTYQERSGAGSTLVGQFISHDHEQRHTFSGVPGLPHQEPREVTY 83
Query: 76 DDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
M+ K + I I + A F+ + V RNFT+GR V A+CLY+ CR ++
Sbjct: 84 --MKGKKLIVEIASQLRINQHCIDTAHNFFRMCVCRNFTRGRMRSHVVAACLYMTCRLEN 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-G 190
LL+DFS+ +NV+ELG L + L I L DP +++ +F L G
Sbjct: 142 TAHLLLDFSDVTQVNVFELGRTLNFLARSLKIN-----LPTTDPCLYILRFAVLLEFGEK 196
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 250
K+V A ++ MKRDWI TGR+P+GLCGAAL ++A + + DIV++VHI EA
Sbjct: 197 EKEVVSLATRLVQRMKRDWIATGRRPTGLCGAALLLAARCYNFNRTIGDIVRVVHISEAV 256
Query: 251 LMKRLIEFENTDSGSLTIEDF 271
+ KRL EF T S SLTI++F
Sbjct: 257 VRKRLDEFGKTPSSSLTIDEF 277
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 25/134 (18%)
Query: 411 DGSD--NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 468
+G+D +F +IDD E+D Y+ + EE K +W ++N+E+L E +E A + +
Sbjct: 418 NGNDELDFKEIDDDEIDTYILSREEAETKSRLWMKLNKEHLVEMELREQEGAERERGDDG 477
Query: 469 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 528
+ +K K+ A+ K S A TA EA +++ +K+L
Sbjct: 478 IVR-----------------------KKRKKSTNIAKRKESIVASTAQEAITKVIQEKKL 514
Query: 529 SSKINYDVLEKLFD 542
S+KI+Y++L+++ D
Sbjct: 515 SNKIDYEILKEVMD 528
>gi|409041381|gb|EKM50866.1| hypothetical protein PHACADRAFT_31958 [Phanerochaete carnosa
HHB-10118-sp]
Length = 706
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 159/310 (51%), Gaps = 47/310 (15%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT-- 58
M C C V + C +CG V+E++ E TF + + G + + G+FV
Sbjct: 1 MTVCVECGGTVIEYDAAAGNGFCVQCGTVVEENTIVNEVTFGETSTGAAMVQGSFVAQGA 60
Query: 59 ----IQSEYG-----ASRERLM-----------------EKAFDDMRQMKNALNIGESDE 92
+ +G SRE+ + +A + Q+ + SD
Sbjct: 61 THARMGGPFGNRGSSESREQTIANGASYPSCELCFRPDAPQATRKIEQICQHFRL--SDV 118
Query: 93 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLN------- 144
+ A R Y +A+ FT+GRR+ V A C+Y+ACRQK ++ ++LIDFS+ L
Sbjct: 119 VSLAATRLYTLALEHKFTRGRRSMHVVAVCVYVACRQKETRNYMLIDFSDLLQRMLTSAF 178
Query: 145 -INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDI 201
++V+ELG YLQL + L + L +DPS + +F LL G++ +V A +
Sbjct: 179 KVSVFELGHTYLQLVRTLNLR-----LPPIDPSHHISRFA-ALLEFGDETPRVAVDATRL 232
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261
+A M RDW+ GR+PSG+CGAAL ++A + + S ++IV++V I ++T+ KRL EF T
Sbjct: 233 VARMDRDWLARGRRPSGICGAALLLAARMNNFRRSVAEIVQVVKIADSTVRKRLEEFRKT 292
Query: 262 DSGSLTIEDF 271
S +L++ DF
Sbjct: 293 SSAALSVGDF 302
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 24/117 (20%)
Query: 427 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 486
++ EEE K+ +W EMNR+YLE AAKA LE PE + + A
Sbjct: 516 FILTEEEVKVKERVWVEMNRDYLEN--------LAAKAELEQMGGETPEKKKRKKRKTA- 566
Query: 487 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFD 542
+ R A + TA E+ + ++ K R S +INYD L LFD
Sbjct: 567 -----------HTKPRDASTPHGA---TAAESVKNLIKKNPRYSKRINYDALRDLFD 609
>gi|225681951|gb|EEH20235.1| transcription initiation factor IIIB chain BRF [Paracoccidioides
brasiliensis Pb03]
Length = 767
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 131/256 (51%), Gaps = 28/256 (10%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDD 77
D C CG V+ + N +E TF ++A+G + + G FV QS +G S
Sbjct: 65 DGMKVCSGCGTVVSESNIVSEITFGESASGAAIVQGTFVGADQS-HGRS----------- 112
Query: 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 136
ES EI GRRT+ V A CLY+ACR Q +L
Sbjct: 113 GGPGFQRGGGMESREITE--------------QNGRRTKTVAAVCLYIACRRQDGNTVML 158
Query: 137 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVC 195
IDF++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 159 IDFADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGTSMMQVA 218
Query: 196 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 255
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 219 SEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRL 278
Query: 256 IEFENTDSGSLTIEDF 271
EF+ T+SG LT++ F
Sbjct: 279 NEFKATESGELTVDQF 294
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 421 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 480
D EV L + E K+ IW N++YL Q AK A K AL A
Sbjct: 457 DPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL-------------A 498
Query: 481 QELAAAAAAAVAKSRKEKQQKRAAEA--------------KNSGPAQTALEATRRMLTKK 526
+E VA +++++ R + A T EA R+ML K+
Sbjct: 499 EEEELVNGRRVANRPRKRRKGRMGDVGYLGEGNGEGGEGEGGGTRASTPAEAMRKMLEKR 558
Query: 527 RLSSKINYDVLEKLFDD 543
S KINY +LE++++D
Sbjct: 559 GFSKKINYRLLEEMYED 575
>gi|270010202|gb|EFA06650.1| hypothetical protein TcasGA2_TC009573 [Tribolium castaneum]
Length = 458
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 122/383 (31%), Positives = 182/383 (47%), Gaps = 57/383 (14%)
Query: 168 NVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226
++ +VDP +++ +F +L G ++V +TA ++ MKRD I +GR+PSGLCGAAL +
Sbjct: 2 DITLEVDPCLYILRFAAKLEFGSKTQQVANTALRLVQRMKRDSIHSGRRPSGLCGAALLI 61
Query: 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANL 286
+A H S SDIVKIV + E+TL KRLIEF +T S +LT+E+FM V
Sbjct: 62 AARLHEFGRSASDIVKIVKVHESTLRKRLIEFGDTPSSALTLEEFMT--------VDLEE 113
Query: 287 PNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISE-----GLEGGADPPAFQVA 341
+ P + KD + L R EE +I+E ++ D
Sbjct: 114 EQDPPSFKA-----ARKKDKER-----LQRLMEEEAESITELQQEIEMQLNRDAKMKSRK 163
Query: 342 ERERMVKASAEENSSFERESDSPFMSRV---DKVQSPEPERVP-KNCTTQTASNEGEGDH 397
++ER + E N F RES ++++ + ++ PE + P K AS
Sbjct: 164 KKERDTEEIQETN-RFIRESTMGTINQIIQEEAIEDPEIAKEPVKELGPDIASMGLASSL 222
Query: 398 TKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEA 457
T + D F DIDD E+D Y+ +E E K IW + N +LEEQ K
Sbjct: 223 EDTSNAVQPPQPLDVDMTFDDIDDEELDSYIMSEHESQNKNAIWLKRNAAFLEEQKIK-- 280
Query: 458 AAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALE 517
E LQ +E + + EK+++R K GP +A E
Sbjct: 281 ----------------AEKLQKERE----------EGKPEKKKRRNVRRKPIGPTNSAGE 314
Query: 518 ATRRMLTKKRLSSKINYDVLEKL 540
A ++L +K++SSKINYDVL+ L
Sbjct: 315 AIEKILQEKKISSKINYDVLKSL 337
>gi|389642775|ref|XP_003719020.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|351641573|gb|EHA49436.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|440475254|gb|ELQ43948.1| transcription initiation factor IIB [Magnaporthe oryzae Y34]
gi|440490906|gb|ELQ70402.1| transcription initiation factor IIB [Magnaporthe oryzae P131]
Length = 701
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 138/270 (51%), Gaps = 23/270 (8%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV--------------RTIQSEYGAS-- 66
C CG+V +D N E F + A G + + G++V R I +S
Sbjct: 75 CRTCGRVADDSNIVAEIQFGETAGGAAVVQGSYVGPDGGVRLSGGQGGRRIAGTNTSSEA 134
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RE+ + +A ++ N+LN+ E V+ A + + +A +RNFT+GR + V A CLY A
Sbjct: 135 REKALREARSLIQGFANSLNLPE--RTVNGASQLFKLASSRNFTQGRSSVYVAAMCLYAA 192
Query: 127 CRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR+++ +L+D ++ + +V+ LG +Y + N + D +++F R
Sbjct: 193 CRKETSCKIMLMDLADLVQHDVFHLGRMYKAFISDIGAGGNYNPIFVED---LIYRFAAR 249
Query: 186 LLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G KV TA ++ M RDW+ GR+PSG+CGA L ++A + + + ++V I
Sbjct: 250 LEFGDKTNKVASTAVRLVQRMDRDWMVLGRRPSGICGACLIMAARMNNFRRTVREVVFIA 309
Query: 245 HICEATLMKRLIEFENTDSGSLTIEDFMAR 274
+ TL +RL EF S LT++DF+ R
Sbjct: 310 KVTMHTLQQRLNEFAEVPSAKLTVDDFLMR 339
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 26/128 (20%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D F+D D EV L +EE K +W N++++ +Q KE A
Sbjct: 539 DEFAD--DPEVMYCLLGKEEVELKTQLWVNQNKDWMRKQQEKEFKA-------------- 582
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 533
LAA + + K+ R E + S PA +A +AT M+ +++ S +I+
Sbjct: 583 --------RLAATNPPKPGRGNRAKK-PRIGEGQTS-PADSATDATLEMIDRRQFSKRID 632
Query: 534 YDVLEKLF 541
YD + +
Sbjct: 633 YDAVRSML 640
>gi|429962700|gb|ELA42244.1| hypothetical protein VICG_00643 [Vittaforma corneae ATCC 50505]
Length = 394
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 148/276 (53%), Gaps = 17/276 (6%)
Query: 1 MVWCSSCAR---HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR 57
M CS+C H R + C CG V E++ + F + ++ L G V
Sbjct: 1 MAKCSNCGSLDFHTDAAR---GSVYCGECGMVHEENTVVSALQF-DSTTSKTVLYGKIVN 56
Query: 58 TIQSEYGASRERLMEKAFDDMRQMKNA-LNIGESDEIVHVAKRFYGIAVARNFTKGRRTE 116
+ G + ++ ++ +K+ L + ++ A R+Y + + + +KG+
Sbjct: 57 VENTNIGT---QFIDSSYYIKNTLKSICLKLSLGNDHAECAFRWYKLCLQYSLSKGKSIL 113
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
++C+Y+ CRQ+S P LLIDFSN L I+++++G V+L++ Q+L I + +DPS
Sbjct: 114 YTLSACVYITCRQESTPHLLIDFSNELRIDLFKIGKVFLKIRQLLGID-----IPLIDPS 168
Query: 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
+++H+F +L NK++ + + +++ MK+DWI GR+P+ CGAAL +++ +
Sbjct: 169 LYMHRFCSQL-KFKNKEILNFSTLLVSRMKKDWILEGRRPNNSCGAALLIASRIFNEERD 227
Query: 237 KSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
+++ + VH AT+ KRL E +T+S L I+ FM
Sbjct: 228 IAEVARAVHASIATINKRLEEMRDTESAELQIDQFM 263
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 64/168 (38%), Gaps = 46/168 (27%)
Query: 377 PERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHY 436
P K + + E H TP T D S D + F+ D +L NE+E
Sbjct: 273 PPVFKKALQAEVSEERIEETHFDTP----ITTFEDDSVEMKDAETFDFDDFLLNEDEAKT 328
Query: 437 KKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRK 496
K +IW++M EYL+E AQE RK
Sbjct: 329 KAVIWDQMYGEYLKE----------------------------AQE-----------KRK 349
Query: 497 EKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 544
+++ +K G T EA + K++SSK+NY LE LFD S
Sbjct: 350 LRKESVRRHSKRHG-FNTVEEAFLSL--DKKVSSKLNYAALEALFDPS 394
>gi|321468451|gb|EFX79436.1| hypothetical protein DAPPUDRAFT_304854 [Daphnia pulex]
Length = 638
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 150/265 (56%), Gaps = 20/265 (7%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT--------IQSEYGA----SRE 68
+ C CG VLE++ +E F +NA G + G FV + I S G SRE
Sbjct: 23 VVCTNCGVVLEENCIVSEVQFEENAYGGASAIGQFVSSENQGGTGFINSYRGGNGKQSRE 82
Query: 69 RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 128
M++A + + M LN+ + + +A FY +A+ R+ T GR++ A+C+Y+ CR
Sbjct: 83 ITMKRAREKITTMGQQLNLNQ--HCIDMAVNFYAMALTRHLTNGRKSSHTVAACIYITCR 140
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
+ LLID ++ ++I+VY LG ++Q+ + ++ + VDP +++ ++ +R+
Sbjct: 141 MEGTAHLLIDIADVIDIDVYTLGHNFMQIAKTFNLS-----IPSVDPCLYVMRYANRMNF 195
Query: 189 GG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +V TA ++ MKRDWI TGR+PSGLCGAAL ++A HG + D+++ V +
Sbjct: 196 GDKTHEVSRTALRLVQRMKRDWIHTGRRPSGLCGAALLLAARFHGFNRTVVDVIREVKVH 255
Query: 248 EATLMKRLIEFENTDSGSLTIEDFM 272
E T+ KR+ EF T S L+IE+FM
Sbjct: 256 ENTVRKRMQEFGETASSDLSIEEFM 280
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Query: 412 GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 471
G + IDD E+D Y+ E E +W +N E+++E LEA
Sbjct: 420 GELDLEGIDDSEMDSYIRTEYEVKMTSDMWMAINGEFMKE--------------LEAK-- 463
Query: 472 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSK 531
Q + + RK K +R + SG T EA +ML KR+S+K
Sbjct: 464 ------QKRKAEEEEEKQKRGEKRKRKTGRRQPQQSYSG--STPGEAIGKMLVGKRISNK 515
Query: 532 INYDVLEKL 540
INYD L+ L
Sbjct: 516 INYDKLKDL 524
>gi|402083713|gb|EJT78731.1| transcription initiation factor IIB [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 724
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 136/271 (50%), Gaps = 24/271 (8%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ-----------------SEYGA 65
C CG+V +D N E F + + G + + G+++ Q S
Sbjct: 78 CRTCGRVADDTNIVAEIQFGETSQGAAMVQGSYIGPDQGGVRLSGGQGGRRIAGTSTSTE 137
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
++E+ + +A + LN+ D ++ A + Y +A +RNFT+GR + V A CLY
Sbjct: 138 AKEKALREAKSLITGFARQLNL--PDRTINSAVQLYKLASSRNFTQGRSMQYVAAMCLYA 195
Query: 126 ACRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
ACR+++ +L+D ++ + +V+ LG +Y + + N + D +++F
Sbjct: 196 ACRKEATCKIMLMDLADLVQHDVFHLGRMYKAFIRDIGAGGNYNPIFVED---LIYRFAA 252
Query: 185 RLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
RL G KV +TA ++ M RDW+ GR+PSG+CGA L ++A + + + ++V I
Sbjct: 253 RLEFGDKTNKVANTAVRLVQRMDRDWMVMGRRPSGICGACLIMAARMNNFRRTVREVVFI 312
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDFMAR 274
+ TL +RL EF S LT+EDF+ R
Sbjct: 313 AKVTMHTLQQRLDEFAEVPSAKLTVEDFLVR 343
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D F+D D EV L ++EE K +W N++++ +Q KE KA L A N
Sbjct: 548 DEFAD--DPEVMYCLLSKEEAELKTQLWVNQNKDWMRKQQEKEF-----KAKLAA---NK 597
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 533
P+G R ++ R E + S PA +A +AT M+ +++ S +I+
Sbjct: 598 PKG------------------RSRSKKPRIGEGQTS-PADSATDATLEMIDRRQFSKRID 638
Query: 534 YDVLEKLF 541
YD + +
Sbjct: 639 YDAVRSML 646
>gi|451847520|gb|EMD60827.1| hypothetical protein COCSADRAFT_39548 [Cochliobolus sativus ND90Pr]
Length = 732
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 138/271 (50%), Gaps = 19/271 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ---SEYGASRERL--ME 72
D + C CGKV ++ +E TF + + G + + G F+ Q + G + L ME
Sbjct: 61 DGTVMCYNCGKVHDESQIVSEVTFGETSGGAAIVEGGFIHANQRHANSMGGTMRGLGGME 120
Query: 73 KAFDDMRQMKNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
KNA+ ++ + + ++ A +Y +A+ F +GRR V A +Y+A
Sbjct: 121 SREQAAMNGKNAIQALGASLNQREAVIEQAFSWYKLAMNHRFIQGRRMRNVAAVSIYMAA 180
Query: 128 R-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE-----SNVLKQVDPSIFLHK 181
R Q +LID + + NV+ LG Y Q ++L D S +++++P + K
Sbjct: 181 RRQPENTLMLIDLAEKIQTNVWALGDTYKQFLEMLKEEDPAQLAGSKAVQEIEP--LMLK 238
Query: 182 FTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +L G + +V D A +L M RDW+ GR+P+GLCGA + ++A + + + ++
Sbjct: 239 YCRKLEFGDDSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIREV 298
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
V +V + ++T+ RL E++ T S +LT+ F
Sbjct: 299 VYVVKVADSTITSRLYEYKRTQSAALTVNQF 329
>gi|281212344|gb|EFA86504.1| TATA box-binding protein-associated factor [Polysphondylium
pallidum PN500]
Length = 582
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 129/266 (48%), Gaps = 64/266 (24%)
Query: 18 DSQLCCDRCGKVLEDHNFSTE----------ATFVKNAAGQSQLSGNFVRTIQSEYGASR 67
D C CGKV++ N +E TFV + G S+ N R SR
Sbjct: 19 DGSTVCVACGKVIDSANIVSEIQFSDSSGVMGTFVSKSGGGSRSYRNLGRD-------SR 71
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
E +E A + + + +N+ + + +A R Y +A+ NFTKGRRT+ V A+CLY+ C
Sbjct: 72 ELSIENARRRLHMIASQVNLKQHH--IDMALRMYQLAIEHNFTKGRRTQNVAATCLYIVC 129
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++S P + F+N L +F ++
Sbjct: 130 RRESTPRI---FANSL-------------------------------------EFEEK-- 147
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
++V TA ++A MKRDW+ TGR+PSG+CGA+L+++A HG + +I++IV I
Sbjct: 148 ---TQEVAATALKLVARMKRDWMATGRRPSGICGASLFIAAKMHGFTRTVREIIQIVKIG 204
Query: 248 EATLMKRLIEFENTDSGSLTIEDFMA 273
E TL KRL EF+ T + + I +F A
Sbjct: 205 ETTLTKRLDEFKQTPASMMRISEFEA 230
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 415 NFSDIDDFEVDGYLHNEEEKHY-KKIIWEEMNREYLEEQAAK 455
D+ D E+D Y+ +++E Y K +IW EMN+E++ +QA +
Sbjct: 420 TLDDLSDEELDTYIEDDKETIYAKDVIWSEMNKEWIVKQAQR 461
>gi|451996589|gb|EMD89055.1| hypothetical protein COCHEDRAFT_1180203 [Cochliobolus
heterostrophus C5]
Length = 648
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 138/271 (50%), Gaps = 19/271 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ---SEYGASRERL--ME 72
D + C CGKV ++ +E TF + + G + + G F+ Q + G + L ME
Sbjct: 61 DGTVMCYNCGKVHDESQIVSEVTFGETSGGAAIVEGGFIHANQRHANSMGGTMRGLGGME 120
Query: 73 KAFDDMRQMKNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
KNA+ ++ + + ++ A +Y +A+ F +GRR V A +Y+A
Sbjct: 121 SREHAAMNGKNAIQALGASLNQREAVIEQAFSWYKLAMNHRFIQGRRMRNVAAVAIYMAA 180
Query: 128 R-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE-----SNVLKQVDPSIFLHK 181
R Q +LID + + NV+ LG Y Q ++L D S +++++P + K
Sbjct: 181 RRQPENTLMLIDLAEKIQTNVWALGDTYKQFLEMLKEEDPAQLVGSKAVQEIEP--LMLK 238
Query: 182 FTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +L G + +V D A +L M RDW+ GR+P+GLCGA + ++A + + + ++
Sbjct: 239 YCRKLEFGDDSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIREV 298
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
V +V + ++T+ RL E++ T S +LT+ F
Sbjct: 299 VYVVKVADSTITSRLYEYKRTQSAALTVNQF 329
>gi|154314754|ref|XP_001556701.1| hypothetical protein BC1G_04086 [Botryotinia fuckeliana B05.10]
gi|347832015|emb|CCD47712.1| hypothetical protein [Botryotinia fuckeliana]
Length = 726
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 149/276 (53%), Gaps = 25/276 (9%)
Query: 15 RPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA--------- 65
+P C CG V++D N +E F ++++G + + G+ V Q GA
Sbjct: 51 KPQIEDGVCHNCGTVVDDSNIVSEIQFGESSSGAAIVQGSHVGADQG--GAQTMGPAFRR 108
Query: 66 ------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
++E + + M+ + N L I SD+++ V + + +A NF +GRRT+ V
Sbjct: 109 AGGGESNKENTLREGKRIMQALANQLGI--SDQVIGVGHQIFKLASMNNFIQGRRTDLVA 166
Query: 120 ASCLYLACRQKSKP--FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
A CLY ACR K +P +LIDF++ +NV+ LG + L + + +A ++ + V P
Sbjct: 167 AVCLYSACR-KEQPCRVMLIDFADKSQVNVFTLGKYFKALHKQISLA--TDGILPVLPED 223
Query: 178 FLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
+ KF +L +KV D A ++ M DW+ GR+PSG+CGA L ++A + + +
Sbjct: 224 LIWKFASKLEFYEQTEKVADDAIRMVRRMSLDWMVMGRRPSGVCGACLILAARMNNFRRT 283
Query: 237 KSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
+++V +V + AT+ KRL EF+ T S +LT+E+F+
Sbjct: 284 VTEVVYVVKVTTATIQKRLEEFKRTPSSALTVEEFL 319
>gi|426378227|ref|XP_004055844.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Gorilla
gorilla gorilla]
Length = 473
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 167/374 (44%), Gaps = 63/374 (16%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 257 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 297
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 62 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 121
Query: 298 EVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENS 355
+ + + +P A G S ++ T + L G + E E + A++ N
Sbjct: 122 DAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCG------EEDTEDEELEAAASHLNK 175
Query: 356 SFERESDSPFMSRVDKVQSPEPERVPKNCTT-----QTASNEGEGDHTKTPGVDATTEAS 410
RE + SPE P + TA++ G D + +++
Sbjct: 176 DLYRELLGGAPGSSEAAGSPEWGSRPPALGSLLDPLPTAASLGISDSIRECISSQSSDPK 235
Query: 411 DGSDN----FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 466
D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 236 DASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK--- 292
Query: 467 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 526
EL KE + K++ + + A TA EA +ML +K
Sbjct: 293 ---------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQK 328
Query: 527 RLSSKINYDVLEKL 540
++SSKINY VL L
Sbjct: 329 KISSKINYSVLRGL 342
>gi|340960531|gb|EGS21712.1| transcription factor iiib-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 842
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 130/269 (48%), Gaps = 23/269 (8%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY---------------GAS 66
C CG V+ + N E TF + A G S + G V Q GAS
Sbjct: 74 ACQNCGYVVYESNIVAEVTFGETANGASVVHGTHVAADQGAIRPSGGGLAFRRVAGAGAS 133
Query: 67 --RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
RER + +A M Q L I + A + Y +A NF +GRR V A CLY
Sbjct: 134 EARERSLREAKQLMTQFAYQLQI--PPHVTEKAFQLYKVAANSNFIQGRRKNTVAAICLY 191
Query: 125 LACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
CR +++ +LIDF++ + +V+ LG Y +L +L E + ++ IF +F
Sbjct: 192 ATCRKEENNKVMLIDFADIIKTDVFLLGRSYKELLALLPDVKEGSKPVIIEDLIF--RFA 249
Query: 184 DRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 242
+L KV +A I M+ D IT GR+P+G+CGAAL ++A H + + ++V
Sbjct: 250 SKLEFLHDTNKVAMSAIRIAQRMRHDNITHGRRPAGICGAALIMAARAHNYRRTVREVVY 309
Query: 243 IVHICEATLMKRLIEFENTDSGSLTIEDF 271
I + ATL +R+ EF N S +T+++F
Sbjct: 310 IAKVTMATLQERMEEFANVPSAQMTVQEF 338
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D F+D D EV +E++ K++IW N++Y+ + K A A+ N
Sbjct: 627 DEFAD--DPEVIYCKLDEKDVMIKEMIWANHNKDYMRKMQQKIFEAKMAQ--------NG 676
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 533
P K ++ + +K + PA +ALEA + ML + +SSK++
Sbjct: 677 P-----------------PKPKRNRAKKPRIGEGQTAPAGSALEAAQNMLRTRAISSKLD 719
Query: 534 YDVLEKLFDDSVCLYSIS 551
Y + LFD L S S
Sbjct: 720 YSRMGNLFDPKGSLGSKS 737
>gi|378734701|gb|EHY61160.1| transcription initiation factor TFIIB [Exophiala dermatitidis
NIH/UT8656]
Length = 977
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 142/288 (49%), Gaps = 40/288 (13%)
Query: 21 LCCDRCGKVL-EDHNFSTEATFVKNAAGQSQLSGNFVRTIQS----------------EY 63
L C+ CG V E+ +E F + +G+ G V Q+ E
Sbjct: 79 LICETCGAVAQEESGLVSEQGFGETDSGRITALGVHVGESQTHQRTYAAGGALGNAGREP 138
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
+R+R A M ++ L + ++ V + + +A +F +GR + V CL
Sbjct: 139 TVNRDRSEAHARTVMLSYQSLLGVRLAE--VEAGMQIFKLAWGNSFVQGRTIDSVAVVCL 196
Query: 124 YLACRQK-------SKP---FLLIDFSNYLNINVYELGAVYLQLCQVLYI-------ADE 166
YLACR+K +P +LIDF+ LNI+V+ LG +Y L + LY+ AD
Sbjct: 197 YLACRRKHEQIRNERRPMYSLMLIDFAEKLNIDVFALGKMYSDLVRRLYLQPDGSVQADV 256
Query: 167 SNVLKQVDPSIFLHKFTDRL---LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAA 223
S L + P + +++F D L +K D R I+ MKRDW++TGR+PSG+CGAA
Sbjct: 257 SADLLAMGPEVLVNRFVDELEFDREHRDKIKMDAIR-IVQRMKRDWMSTGRRPSGVCGAA 315
Query: 224 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+ ++A + + + ++V + E T+ KRL EF++T S L+I+ F
Sbjct: 316 VILAARMNNYRRTTREVVLTAKVTEITINKRLAEFQDTASSKLSIKQF 363
>gi|356561939|ref|XP_003549234.1| PREDICTED: uncharacterized protein LOC100781816 [Glycine max]
Length = 277
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/137 (60%), Positives = 106/137 (77%), Gaps = 4/137 (2%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
D S+ SDIDD EVD Y+H+EE KH KKI+WE NRE+LEEQAAKEAAAAA+K A EA +
Sbjct: 110 DESETLSDIDDEEVDLYIHDEEGKHIKKILWETANREHLEEQAAKEAAAAASKKAFEAKF 169
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR--- 527
+NC E + AA+ELAA++ AVAKS+KE +QKRA EAKN+ PAQ+A EA +M KKR
Sbjct: 170 ENCSEDILAARELAASSTEAVAKSKKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQ 229
Query: 528 -LSSKINYDVLEKLFDD 543
L SK+N+++L +LFD+
Sbjct: 230 GLKSKVNFELLNELFDE 246
>gi|336471108|gb|EGO59269.1| hypothetical protein NEUTE1DRAFT_145317 [Neurospora tetrasperma
FGSC 2508]
gi|350292195|gb|EGZ73390.1| hypothetical protein NEUTE2DRAFT_149471 [Neurospora tetrasperma
FGSC 2509]
Length = 878
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 133/271 (49%), Gaps = 28/271 (10%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY--------------GAS- 66
C CG V +D N +E TF ++++G + + G V Q GAS
Sbjct: 72 TCQTCGMVADDSNIVSEITFGESSSGAAVVHGTHVAFDQGGIRGVGGLAFRRVAGGGASE 131
Query: 67 -RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
RER + + M+Q L IG+S I +A R+Y NF +GRR + V A CLY
Sbjct: 132 ARERSLREVKALMQQYSYQLRIGQS--ISDIAFRYYKACSHANFVQGRRKQNVAAICLYA 189
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHK 181
ACR + + +LID ++ L+ +V+ LG Y L P + +++
Sbjct: 190 ACRAENNHKIMLIDLADLLHTDVFALGRGYKDFLNRF-----PEFLTGPRPIVIEDLIYR 244
Query: 182 FTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F +L KV +A I M+ D IT GR+P+G+CGAAL ++A H + + ++
Sbjct: 245 FASKLEFLHDTNKVALSAVRIAKRMQHDNITHGRRPAGICGAALIMAARAHNYRRTVREV 304
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
V IV + AT+ +R+ EF + + +T++DF
Sbjct: 305 VYIVKVTMATIQERMDEFASVPAAQMTVQDF 335
>gi|367033853|ref|XP_003666209.1| hypothetical protein MYCTH_2310743 [Myceliophthora thermophila ATCC
42464]
gi|347013481|gb|AEO60964.1| hypothetical protein MYCTH_2310743 [Myceliophthora thermophila ATCC
42464]
Length = 852
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 131/272 (48%), Gaps = 29/272 (10%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY---------------GAS 66
C CG+V+ + N E TF ++A G + + G+++ Q GAS
Sbjct: 74 ACQNCGRVVWESNIVAEVTFGESANGAAVVHGSYLAADQGSVRPTAPGLAFRRVAGAGAS 133
Query: 67 --RERLMEKAFDDMRQMKNALNIGESDEIVHVAKR---FYGIAVARNFTKGRRTEQVQAS 121
RER + +A M Q + L I HVA++ Y A NF +GRR V A
Sbjct: 134 EARERSLREARQLMNQFAHQLQIAP-----HVAEKAFQVYKFASNSNFIQGRRKNTVAAV 188
Query: 122 CLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180
C+Y CR++ + +LID ++ + +V+ LG Y L L D + K + +
Sbjct: 189 CIYAVCRKEDNNKVMLIDLADIIKTDVFLLGRSYKDLLNAL--PDMKDGTKPIIIEDLIF 246
Query: 181 KFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F +L KV +A I M+ D IT GR+P+G+CGAAL ++A H + + +
Sbjct: 247 RFASKLEFLHDTNKVALSAIRIAQRMRHDNITHGRRPAGICGAALIMAARAHNYRRTVRE 306
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+V I + ATL +R+ EF N S +T+ DF
Sbjct: 307 VVYIAKVTMATLQERMEEFANVPSAQMTVRDF 338
>gi|85082526|ref|XP_956934.1| hypothetical protein NCU04523 [Neurospora crassa OR74A]
gi|28918015|gb|EAA27698.1| predicted protein [Neurospora crassa OR74A]
Length = 878
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 133/271 (49%), Gaps = 28/271 (10%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY--------------GAS- 66
C CG V +D N +E TF ++++G + + G V Q GAS
Sbjct: 72 TCQTCGMVADDSNIVSEITFGESSSGAAVVHGTHVAFDQGGIRGVGGLAFRRVAGGGASE 131
Query: 67 -RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
RER + + M+Q L IG+S I +A R+Y NF +GRR + V A CLY
Sbjct: 132 ARERSLREVKALMQQYSYQLRIGQS--ISDIAFRYYKACSHANFVQGRRKQNVAAICLYA 189
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHK 181
ACR + + +LID ++ L+ +V+ LG Y L P + +++
Sbjct: 190 ACRAENNHKIMLIDLADLLHTDVFALGRGYKDFLNRF-----PEFLTGPRPIVIEDLIYR 244
Query: 182 FTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
F +L KV +A I M+ D IT GR+P+G+CGAAL ++A H + + ++
Sbjct: 245 FASKLEFLHDTNKVALSAVRIAKRMQHDNITHGRRPAGICGAALIMAARAHNYRRTVREV 304
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
V IV + AT+ +R+ EF + + +T++DF
Sbjct: 305 VYIVKVTMATIQERMDEFASVPAAQMTVQDF 335
>gi|162606550|ref|XP_001713305.1| TFIIB related factor hBRF [Guillardia theta]
gi|12580771|emb|CAC27089.1| TFIIB related factor hBRF [Guillardia theta]
Length = 394
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 130/266 (48%), Gaps = 8/266 (3%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C C + ++ C+ CG V+++ + + F+K ++L G + T + +
Sbjct: 3 CYECKNKEIFFDYKNGKIICNCCGYVIKEDISNPDLNFIKENKSSTKLEGKIISTKINHF 62
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
+ + L N LN+ + + + + Y NF ++ + SCL
Sbjct: 63 KNNNQNLNSGIKRKFHIYGNLLNLNQIN--IEKSMTLYLKISEINFVINKKVDLYIISCL 120
Query: 124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
Y+ R + P LL+DFS+ I ++G +L++ + L + + +DP IF+H+F
Sbjct: 121 YMISRFEKTPHLLVDFSDISQIRTNKIGVEFLKISKNLKME-----IPIIDPCIFIHRFA 175
Query: 184 DRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 242
RLL G K+ +A I+A MKR+W++TGR+PS LCG AL +++ +G +I K
Sbjct: 176 SRLLLGKKSGKIITSALRIIARMKRNWLSTGRRPSSLCGVALLIASRMYGFSIDTKEISK 235
Query: 243 IVHICEATLMKRLIEFENTDSGSLTI 268
IV + +L R+ E +NT +T+
Sbjct: 236 IVRVGHLSLKSRINEIKNTTLAQMTL 261
>gi|261200727|ref|XP_002626764.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
dermatitidis SLH14081]
gi|239593836|gb|EEQ76417.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
dermatitidis SLH14081]
Length = 777
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 129/267 (48%), Gaps = 55/267 (20%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE---YGA--------- 65
D C CG V+ + N +E TF ++A+G + + G FV QS +G
Sbjct: 66 DGMKVCSGCGTVVSEANIVSEITFGESASGAAIVQGTFVGAGQSHGRSFGPGFQRGGGME 125
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE + + Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+
Sbjct: 126 SREITEQNGNRYIAQLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYI 183
Query: 126 AC-RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
AC RQ +LIDF++ L + E G+ +Q
Sbjct: 184 ACRRQDGNTVMLIDFADVL---MLEFGSSMMQ---------------------------- 212
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
V A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V
Sbjct: 213 ---------VASEAVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVV 263
Query: 245 HICEATLMKRLIEFENTDSGSLTIEDF 271
+ E T+ +RL EF+ T+SG LT++ F
Sbjct: 264 KVTELTIHQRLNEFKATESGDLTVDQF 290
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 418 DID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 471
DID D EV L + E K+ IW N++YL Q AK A A+ E
Sbjct: 446 DIDASEFDSDPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAE---EEDLI 502
Query: 472 N--CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 529
N P + ++ V + + + + + A T EATRRML K+ S
Sbjct: 503 NGRVPGITRRPRKRRKGRMGDVGYLEGKGENGEDVDGRGTR-ASTPAEATRRMLEKRGFS 561
Query: 530 SKINYDVLEKLFDD 543
KINY +LE++++D
Sbjct: 562 KKINYRLLEEMYED 575
>gi|330927787|ref|XP_003301998.1| hypothetical protein PTT_13669 [Pyrenophora teres f. teres 0-1]
gi|311322865|gb|EFQ89897.1| hypothetical protein PTT_13669 [Pyrenophora teres f. teres 0-1]
Length = 729
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 138/271 (50%), Gaps = 19/271 (7%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ---SEYGASRERL--ME 72
D+ + C CG V E+ + +E TF + A G + + G + Q + G + L ME
Sbjct: 60 DNNILCYTCGFVHEEVHIVSEVTFAEGANGAATVQGGTIHQDQRHANSMGGTMRGLGGME 119
Query: 73 KAFDDMRQMKNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
KNA+ ++ + + ++ A +Y +++ NF +GRR V A +Y+A
Sbjct: 120 SREQAALNGKNAIQALGASLNQREAVIEQAFSWYKLSMNFNFIQGRRMRNVAAISIYMAA 179
Query: 128 R-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL-----KQVDPSIFLHK 181
R Q +LID + + NV+ LG Y + + D + ++ ++++P + K
Sbjct: 180 RRQPENTLMLIDLAEKIQTNVWVLGDTYKSFLKTMKERDPAQLVGNKAVQEIEP--LMLK 237
Query: 182 FTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
+ +L G + +V D A +L M RDW+ GR+P+GLCGA + ++A + + + ++
Sbjct: 238 YCRKLEFGDDSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIREV 297
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
V +V + ++T+ RL E++ T S +LT+ F
Sbjct: 298 VYVVKVADSTITSRLYEYKRTQSAALTVNQF 328
>gi|297828227|ref|XP_002881996.1| hypothetical protein ARALYDRAFT_346315 [Arabidopsis lyrata subsp.
lyrata]
gi|297327835|gb|EFH58255.1| hypothetical protein ARALYDRAFT_346315 [Arabidopsis lyrata subsp.
lyrata]
Length = 475
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 148/297 (49%), Gaps = 71/297 (23%)
Query: 241 VKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVL 300
VKIVHICEATL KRLIEF NT++ S T ++ ++E + N P VL
Sbjct: 173 VKIVHICEATLTKRLIEFGNTEAASFTADELSKTERERKKETELRSKRN-PISYKEGVVL 231
Query: 301 CKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM-VKASAEENSSFER 359
C H+D KP GLC+SCY+EFM +S GLEGG+DPPAFQ AE+ERM KAS EEN
Sbjct: 232 CMHQDC-KPVDYGLCKSCYDEFMKVSGGLEGGSDPPAFQRAEKERMEEKASREEND---- 286
Query: 360 ESDSPFMSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI 419
+ +++G D + T SD+
Sbjct: 287 ---------------------------KQLNSDGHSDESST---------------LSDV 304
Query: 420 DDFE--------VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 471
DD E +D Y N EE +I+++ N EY E++AAKEAAA A +
Sbjct: 305 DDRESDRFTVSQLDCYFRNPEEVRQVEIVFDLTNPEYNEKEAAKEAAALNASNNASNLF- 363
Query: 472 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 528
A+ AA AKSRKEK+Q+RA E KN+ P TA+EA RM+ +K+
Sbjct: 364 -------------EASKAAAAKSRKEKRQQRAEEEKNAPPPATAMEAVGRMVKRKKF 407
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 498 KQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 544
K+Q+RA E KN+ P TA+EA M+ +K+ +IN D LE+L D S
Sbjct: 44 KRQQRAEEEKNAPPPATAIEAVDSMVKRKKF-RRINCDYLEELLDAS 89
>gi|367044868|ref|XP_003652814.1| hypothetical protein THITE_2114603 [Thielavia terrestris NRRL 8126]
gi|347000076|gb|AEO66478.1| hypothetical protein THITE_2114603 [Thielavia terrestris NRRL 8126]
Length = 845
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 130/272 (47%), Gaps = 29/272 (10%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----------------RTIQSEYGA 65
C CG+V+ + N E TF + A+G + + G+++ R + G+
Sbjct: 80 VCQNCGRVMYESNIVAEITFGETASGAAVVHGSYLAADQGSIRPTASGPAFRRVPGAGGS 139
Query: 66 -SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+RER + +A M Q + L I +V A R Y A NF +GRR V A CLY
Sbjct: 140 EARERSLREAKQIMNQFAHQLRI--PLHLVDKAHRLYRAASTSNFIQGRRKHTVAAVCLY 197
Query: 125 LACRQKS-KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLH 180
CR++ +LID ++ + +V+ LG Y L + N+ + P I +
Sbjct: 198 AICRKEDHNKVMLIDLADIIKTDVFLLGKSYKDL-----LNSHPNLKEGTKPIIIEDLIF 252
Query: 181 KFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F +L KV +A I M+ D IT GR+P+G+CGAAL ++A H + + +
Sbjct: 253 RFASKLEFLHDTNKVALSAVRIAQRMRHDNITHGRRPAGICGAALIMAARAHNYRRTVRE 312
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+V I + ATL +R+ EF N + +T+ F
Sbjct: 313 VVYIAKVTMATLQERMEEFANVPAAQMTVAQF 344
>gi|189204338|ref|XP_001938504.1| transcription factor tfiiib complex subunit brf1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985603|gb|EDU51091.1| transcription factor tfiiib complex subunit brf1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 720
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 138/273 (50%), Gaps = 23/273 (8%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA------------ 65
++ + C CG V E+ + +E TF + + G + + G + Q +
Sbjct: 57 ENTILCYTCGAVHENVDIVSEVTFAEGSNGAATVQGGTIHQDQRHANSMGGTMRGLGGMG 116
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE+ + + + +LN E+ ++ A +Y +++ NF +GRR V A +Y+
Sbjct: 117 SREQAALNGKNAIEALGASLNQREA--VIEQAVSWYKLSMNFNFVQGRRMRNVAAISIYM 174
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL-----KQVDPSIFL 179
A R Q +LID + + NV+ LG Y + + D + ++ ++++P +
Sbjct: 175 AARRQPENTLMLIDLAEKIQTNVWVLGDTYKSFLKTMKEKDPAQLIGNKAVQEIEP--LM 232
Query: 180 HKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
K+ +L G + +V D A +L M RDW+ GR+P+GLCGA + ++A + + +
Sbjct: 233 LKYCRKLEFGDDSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIR 292
Query: 239 DIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
++V +V + ++T+ RL E++ T S +LT++ F
Sbjct: 293 EVVYVVKVADSTITSRLYEYKRTQSAALTVKQF 325
>gi|346973176|gb|EGY16628.1| transcription factor tfiiib complex subunit brf1 [Verticillium
dahliae VdLs.17]
Length = 735
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 147/304 (48%), Gaps = 31/304 (10%)
Query: 9 RHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQS 61
+H T + D C CG++ E+ N E F + ++G + + G+++ RT
Sbjct: 63 KHCTNPKVVDG--ICHGCGRIAEESNIVAEVQFGETSSGAAMVQGSYISADQGGARTFGP 120
Query: 62 EYGASRERLMEKAFDDMRQMKNA----LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+ +K D + + + L IV A + +A+ + FT+GR +
Sbjct: 121 GGRGAGSSQRDKTIIDAKNLIHGYVWRLAGNPRPHIVDKAVATFKLAMGQGFTQGRTLQM 180
Query: 118 VQASCLYLACR---------QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 168
V A+C+Y A R ++++ +++D ++ +NV+ LG + L + I +
Sbjct: 181 VCAACIYYAFRSQERVEGNERETQFVMMLDLADLTRLNVFRLGRCFKALVNKVPIG---S 237
Query: 169 VLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227
+ + P +H+ +L G KV + A ++ SM+RDWI GR+PSG+CGA L ++
Sbjct: 238 LACTIFPEDIIHRLATKLDFGPQTDKVAEDAVRLITSMRRDWIIMGRRPSGICGACLLMA 297
Query: 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 287
A + + + ++V IV + T+ +R+ EF T + LTI+DF+ + E +A P
Sbjct: 298 ARMNNFRRTMREVVYIVKVTSHTIQERMKEFNETAASQLTIDDFLTKDWE-----SAGPP 352
Query: 288 NNGP 291
++ P
Sbjct: 353 SHDP 356
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 27/123 (21%)
Query: 420 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 479
DD EV L + EE K+I+W N+++L + +E LEA P
Sbjct: 553 DDVEVMNALLSPEEVKLKEIVWVNENQDWLRKNQQREF-----DRKLEAGKPKRP----- 602
Query: 480 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 539
+++ + R EA+ S PA T +EA + ++ +S ++NYD +
Sbjct: 603 ----------------RKRNKPRLGEAQTS-PASTPIEAAQNVMKHHGMSKRLNYDAISS 645
Query: 540 LFD 542
L +
Sbjct: 646 LLN 648
>gi|242018719|ref|XP_002429821.1| transcription factor IIIB 70 kDa subunit, putative [Pediculus
humanus corporis]
gi|212514839|gb|EEB17083.1| transcription factor IIIB 70 kDa subunit, putative [Pediculus
humanus corporis]
Length = 485
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 116/408 (28%), Positives = 183/408 (44%), Gaps = 91/408 (22%)
Query: 171 KQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228
++ D S+++ +F +RL GNK +V TA ++ MKRD + TGR+PSGLCGAAL ++A
Sbjct: 9 RKEDVSLYILRFANRL-EFGNKTHQVSMTALRLVQRMKRDSMHTGRRPSGLCGAALLMAA 67
Query: 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPN 288
H S SDI+KIV + E+TL KRL+EF T S SL++++FM
Sbjct: 68 RLHEFNRSVSDIIKIVKVHESTLRKRLLEFGETPSSSLSLDEFMT--------------- 112
Query: 289 NGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA-ERE--- 344
V + + F + ++ F I EG E G + A Q E+E
Sbjct: 113 ----------VDLEEEQDPPSFKAARKKDQHDRFQKIIEGDEMGQNLTALQREIEKELNE 162
Query: 345 -------RMVKASAEENSSFERESDSPFMSRVDKVQSPEPERV------PKNCTTQTASN 391
VK+S+ S E ES++ ++ VQ E + P T N
Sbjct: 163 LSSKRKANHVKSSSVPISGNEEESENQALNNF--VQKFTIEAIEECINKPGEEETGNVEN 220
Query: 392 EGEGDHTKTPGVDA------------------TTEASDGSDNFSDIDDFEVDGYLHNEEE 433
+G T G+ + + DG D+DD E++ Y+ + E
Sbjct: 221 QGLPPSFTTLGLSSNISTTTTTTTTTPTQEQTSLNVPDGELVADDLDDDELNQYIMTDRE 280
Query: 434 KHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAK 493
+K +W ++N +YL+ Q +E A K C K
Sbjct: 281 AKFKDSLWMKVNEDYLQRQKEREEKLAKEKE--------C------------------GK 314
Query: 494 SRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
K++++ + ++KN+ A +A EA +ML +K++S+KINYDVL+ L
Sbjct: 315 PEKKRKKYSSKKSKNAPAANSAGEAFEKMLQEKKMSTKINYDVLKSLM 362
>gi|345311738|ref|XP_003429146.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit-like [Ornithorhynchus anatinus]
Length = 618
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 23/238 (9%)
Query: 37 TEATF-VKNAAGQS-QLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIV 94
T ++F + AG++ L G F + E SR + ++ + + N L + + +
Sbjct: 2 TSSSFCISLGAGKTPSLGGGFHVNLGKE---SRAQTLQNGKRQIHHLGNQLQLNQ--HCL 56
Query: 95 HVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVY 154
A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +
Sbjct: 57 DTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTF 116
Query: 155 LQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGR 214
L L + L I + +DP +++ +F L G N I
Sbjct: 117 LLLARELCINAPA-----IDPCLYIPRFAHMLEFGDNNPEIPNPAAIATV---------- 161
Query: 215 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
P AL V+A H + + +++++V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 162 -PPAQLELALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLTEFEDTPTSQLTIDEFM 218
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 27/137 (19%)
Query: 404 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 463
D + DG + S IDD E+D Y+ N+ E K +W + N EYL+EQ KEA A K
Sbjct: 379 DPNENSGDGELDLSGIDDSEIDRYILNDNEARIKAELWMKENAEYLKEQKEKEARIAKEK 438
Query: 464 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 523
EL KE + K++++ + A TA EA +ML
Sbjct: 439 ------------------ELGI---------YKEHKPKKSSKKREPIQASTAGEAIEKML 471
Query: 524 TKKRLSSKINYDVLEKL 540
+K++SSKINY+VL+ L
Sbjct: 472 EQKKISSKINYNVLKDL 488
>gi|440798133|gb|ELR19201.1| Molybdenum cofactor sulfurase, putative [Acanthamoeba castellanii
str. Neff]
Length = 579
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 94/160 (58%), Gaps = 8/160 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE +E A + M +L G + A R + +A+ NF +GR++E V +SCLY+
Sbjct: 8 SREITLENAKRRISSMAGSL--GLTAHHTESAFRLFLLALQHNFVRGRKSEYVISSCLYV 65
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR++ +LIDF++ LN+ +Y LG +L C +L + L +DPS+++ +F +
Sbjct: 66 VCRREKTAHMLIDFADVLNVPLYYLGHTFLDFCSLLNLQ-----LPVIDPSLYIERFAAK 120
Query: 186 LLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAAL 224
L G V +TA ++ M+RDWI TGR+P+G+CGA L
Sbjct: 121 LGFGDKTHAVANTALRLVQRMRRDWIITGRRPAGICGADL 160
>gi|405954038|gb|EKC21579.1| Transcription factor IIIB 90 kDa subunit [Crassostrea gigas]
Length = 503
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 109/230 (47%), Gaps = 35/230 (15%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C+ C P C CG VLED +E F ++A G S + G FV T S+
Sbjct: 7 CTHCGCTEIDKDPARGDAVCTNCGSVLEDQIIVSEIQFEEHATGASSVIGQFVSTDGSKS 66
Query: 63 --YGASRERLMEK-----AFDDMRQMKNALNI--GESDEIVHVAKRFYGIAVARNFTKGR 113
G S M+K FD+ R+ L + + + A F+ +AV R T+GR
Sbjct: 67 HSLGISFPHGMKKESRTVTFDNGRKRIQQLGVQLKLNQHCIDTAFNFFKMAVNRRMTQGR 126
Query: 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
+T V A+CLY+ INVY LG YLQL + L I + +
Sbjct: 127 KTTHVIAACLYI-------------------INVYSLGKTYLQLSRALCIN-----IPAI 162
Query: 174 DPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGA 222
DP +++ +F +L G +V TA +++ MKRDW+ TGR+PSGLCGA
Sbjct: 163 DPCLYIPRFAHKLEFGEKTHEVSMTALRLVSRMKRDWMHTGRRPSGLCGA 212
>gi|171691422|ref|XP_001910636.1| hypothetical protein [Podospora anserina S mat+]
gi|170945659|emb|CAP71772.1| unnamed protein product [Podospora anserina S mat+]
Length = 835
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 134/284 (47%), Gaps = 22/284 (7%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-----------------RTIQSEYG 64
C CG VL +H+ E TF + + G + + G+++ R +
Sbjct: 63 ACADCGLVLREHDIVAEITFGETSNGAATVQGSYLGANQGGVRPTGMGLSFRRVPGAGLK 122
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+RER + D QM + L++ ++ A Y AV ++ KGRR V A C+Y
Sbjct: 123 EARERAERETRDLCSQMVHQLSV--PLDVADTAMDIYREAVRASYVKGRRKHNVAAVCMY 180
Query: 125 LACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
ACR K +L+D ++ + +V+ LG Y +L + L D ++ IF
Sbjct: 181 AACRLANQKQIMLLDLADIVKTDVFLLGRNYKELMRRLPTFDTGYDPLTLENLIFRFAAK 240
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
L NK V ++A I M +D I+ GR+P+G+ GAA+ ++A H + + ++V +
Sbjct: 241 LEFLHDTNK-VANSALRIAHRMVKDNISIGRRPAGISGAAIIMAARAHNFRRTVREVVYV 299
Query: 244 VHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 287
+ ATL +R+ EF + SL+I FM + E+H + + P
Sbjct: 300 AKVTMATLQERMSEFAAVPAASLSIRQFM-QGDEMHPEASHDPP 342
>gi|356565588|ref|XP_003551021.1| PREDICTED: uncharacterized protein LOC100810175 [Glycine max]
Length = 498
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 100/139 (71%), Gaps = 6/139 (4%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
D S+ SDIDD EVD Y+H+EE KH KKI+WE NREYLEEQAAKEAAAAA+K A EA +
Sbjct: 110 DESETLSDIDDEEVDLYIHDEEGKHIKKILWETANREYLEEQAAKEAAAAASKKAFEAKF 169
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR--- 527
+NC E + AA+ELAA++ AVAKS+KE +QKRA EAKN+ PAQ+A E +M KKR
Sbjct: 170 ENCSEDILAARELAASSTEAVAKSKKEMRQKRAYEAKNTRPAQSAAETFGQMSNKKREQA 229
Query: 528 ---LSSKINYDVLEKLFDD 543
+++ IN E F++
Sbjct: 230 AKEVAAAINKKAFEAKFEN 248
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 451 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRK 496
EQAAKE AAA K A EA ++NC E + AA+EL A++ AVAKSRK
Sbjct: 227 EQAAKEVAAAINKKAFEAKFENCSEDILAARELGASSTEAVAKSRK 272
>gi|356495023|ref|XP_003516380.1| PREDICTED: uncharacterized protein LOC100810140 [Glycine max]
Length = 297
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/117 (64%), Positives = 91/117 (77%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
D S+ SDIDD EVD Y+H+EE KH KKI+WE REYLEEQAAKEAAAAA+K A EA +
Sbjct: 110 DESETLSDIDDEEVDLYIHDEEGKHIKKILWETTYREYLEEQAAKEAAAAASKKAFEAKF 169
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 527
+NC E + AA+ELAA++ AVAKS+KE +QKRA EAKN+ PAQ+A EA +M KKR
Sbjct: 170 ENCSEDILAARELAASSTEAVAKSKKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKR 226
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 33/46 (71%)
Query: 451 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRK 496
EQAAKEA A A K A EA + NC E + AA+ELAA++ AV KSRK
Sbjct: 227 EQAAKEATATANKKAFEAKFGNCSEDILAARELAASSTEAVEKSRK 272
>gi|145544220|ref|XP_001457795.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425613|emb|CAK90398.1| unnamed protein product [Paramecium tetraurelia]
Length = 439
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 104/380 (27%), Positives = 156/380 (41%), Gaps = 84/380 (22%)
Query: 89 ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN-V 147
E E +A+R + N R + + LY R K+ P+LLI+ S ++ +
Sbjct: 50 EYKEAFEIARRLLKFYKSENAI--RNGQYFAGAALYFGFRCKNAPYLLIEISEFIKKDSA 107
Query: 148 YELGAVYLQLCQVL-------YIADESNVLKQVDPSIFLHKFTDRLLPGGNKK---VCDT 197
++ YL+L + + I + L+ +DPSI++ KF RLL K + DT
Sbjct: 108 TKVAKCYLKLLKFVKADAKAPQIVQLAKSLQYLDPSIYIPKFV-RLLEISRDKYKAIVDT 166
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 257
A ++ M DW+ GR+PS LCGAAL +SA HG S + K V +C+ T+ KRL E
Sbjct: 167 AMKLIKRMMLDWMAYGRRPSSLCGAALLISARFHGENVPTSQVCKTVQVCDETIRKRLAE 226
Query: 258 FENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 317
F T LT E F
Sbjct: 227 FNQTGLSQLTREQF---------------------------------------------- 240
Query: 318 CYEEFMTISEGLEGGA-DPPAFQ--VAERERMVKASAEENSSFERES---DSPFMSRVDK 371
E+ I G+ G DPP+++ + E M K EE ES + M + K
Sbjct: 241 --EQIENIETGIPGPVNDPPSYRRIKQQEEEMRKGLTEEQIKQLEESTLKKALEMIELLK 298
Query: 372 VQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGS--DNFSDIDDFEVDGYLH 429
VQ PE + N + P + E D + S+ID+ E Y+
Sbjct: 299 VQ-PEVFKQEDNLKQEYP----------IPVKEPIKEQKDNEILSSLSEIDEQE---YIL 344
Query: 430 NEEEKHYKKIIWEEMNREYL 449
NE+EK K+I+W +N+EY+
Sbjct: 345 NEQEKANKQIVWSALNKEYI 364
>gi|396490241|ref|XP_003843289.1| hypothetical protein LEMA_P073990.1 [Leptosphaeria maculans JN3]
gi|312219868|emb|CBX99810.1| hypothetical protein LEMA_P073990.1 [Leptosphaeria maculans JN3]
Length = 713
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 138/280 (49%), Gaps = 23/280 (8%)
Query: 18 DSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----RTIQSEYGA-------- 65
D C CG VL++ + E TF + A G + + G F+ R S G
Sbjct: 62 DGSTFCFTCGTVLQESSIVAEVTFGETAGGAAIVEGGFIGDQQRHANSMGGTMRGLGGME 121
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRE+ + A + + +L + ++ A +Y +A+ NF +GRR V A +Y+
Sbjct: 122 SREQAVMLARTAIDSLGRSLQ--QRQTVIDQAVGWYKLAMNHNFIQGRRIRNVAAVAIYM 179
Query: 126 ACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-----LKQVDPSIFL 179
A R Q LL+D + NV+ LG Y + L D + + +++++P +
Sbjct: 180 AARRQPENTLLLMDLAEKTQTNVWALGDTYKAFLKKLGEDDPATLSGNKAVQEIEP--LM 237
Query: 180 HKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
K+ +L + KV D A +L M RDW+ GR+P+GLCGA + ++A + + +
Sbjct: 238 LKYCRKLEFAEASHKVADDACKLLRRMGRDWMVQGRQPAGLCGACIILAARMNNFRRTVR 297
Query: 239 DIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKEL 278
++V +V + ++T+ RL E++ T S +LT++ F ++L
Sbjct: 298 EVVYVVKVADSTINSRLYEYKKTPSSALTVKQFREMGQQL 337
>gi|302774819|ref|XP_002970826.1| hypothetical protein SELMODRAFT_94206 [Selaginella moellendorffii]
gi|300161537|gb|EFJ28152.1| hypothetical protein SELMODRAFT_94206 [Selaginella moellendorffii]
Length = 74
Score = 109 bits (272), Expect = 4e-21, Method: Composition-based stats.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
TA I+ASMKRDWI TGRKPSG+CGAAL+VSA HG + SKSD+V +VH+C TL KRL+
Sbjct: 1 TALRIVASMKRDWIQTGRKPSGVCGAALFVSAQIHGFECSKSDVVSVVHVCGDTLTKRLV 60
Query: 257 EFENTDSGSLTI 268
EF NT+SGSLT+
Sbjct: 61 EFGNTESGSLTV 72
>gi|393215043|gb|EJD00535.1| hypothetical protein FOMMEDRAFT_159269 [Fomitiporia mediterranea
MF3/22]
Length = 266
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 83/131 (63%), Gaps = 9/131 (6%)
Query: 97 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYL 155
A R Y +A+ FTKGR V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG +L
Sbjct: 142 AIRMYTLALEHKFTKGRTNMDVIAVCLYIACRQKETRNYMLIDFSDLLQVNVFELGHTFL 201
Query: 156 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTG 213
QL Q L + L VDPS ++ +F LL G++ KV A ++A RDW++ G
Sbjct: 202 QLVQTLNLR-----LPLVDPSHYISRFAA-LLESGDETLKVAADAARLVARFDRDWMSRG 255
Query: 214 RKPSGLCGAAL 224
R+P G+CG++L
Sbjct: 256 RRPVGICGSSL 266
>gi|47213352|emb|CAF92975.1| unnamed protein product [Tetraodon nigroviridis]
Length = 446
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 117/436 (26%), Positives = 177/436 (40%), Gaps = 125/436 (28%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
TA ++ MKRDW+ TGR+PSGLCGAAL V+A H + + D++ +V +C+ TL KRL
Sbjct: 2 TALRLVQRMKRDWMHTGRRPSGLCGAALLVAARMHKFRRTVKDVISVVKVCQTTLRKRLT 61
Query: 257 EFENTDSGSLTIEDFM-----------------------------ARKKELHEG------ 281
EFE+T + LTI++FM RK + EG
Sbjct: 62 EFEDTPTSQLTIDEFMRVDLEQECDPPSFTAGQHKTKMQQLEQELTRKLDDVEGEISCYK 121
Query: 282 --VAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQ 339
+ L + PK+ G+ ++TG P C + E + ++ L DP +
Sbjct: 122 NEIETELEKSRPKLRGIYAACT--QETG-PILCHQVQYPQTEELLLTPSLVTLPDPANAE 178
Query: 340 V-------AERERMVKASA------------EENSSFERES------DSPFMSRVDKV-Q 373
V AE E V+A+A +E + R++ D P RV+ + +
Sbjct: 179 VLSVNPDPAEPEDEVQAAAQRLTQDFLCHVIQEEEGWARKAEDGEPRDHPVKDRVECLHK 238
Query: 374 SPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVD-------- 425
+P + N +A+ H ++ + G + IDD E++
Sbjct: 239 APPLGAILGNLP--SAAGLDLQQHLESAAEPEAEQVEGGELDLDGIDDQEIEKVPGLWSS 296
Query: 426 -------GYLH--------------NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKA 464
G LH N++E K +W + N EYL+EQ KEA K
Sbjct: 297 PLTCLCGGRLHHLLDSERLLLQYILNDKEVEVKTELWMKQNAEYLKEQKEKEARIQKEKE 356
Query: 465 ALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLT 524
+ +Y A K R++K+ A TA EA ML
Sbjct: 357 --QGTY--------------KEKAKKPKKKREQKE------------ASTAGEAIEMMLE 388
Query: 525 KKRLSSKINYDVLEKL 540
+K++SSKINYDVL L
Sbjct: 389 RKKISSKINYDVLRHL 404
>gi|336270840|ref|XP_003350179.1| hypothetical protein SMAC_01071 [Sordaria macrospora k-hell]
gi|380095574|emb|CCC07047.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 862
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 134/293 (45%), Gaps = 38/293 (12%)
Query: 15 RPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGN----------------FVRT 58
+P+ C CG V +D N +E TF ++++G + + G F R
Sbjct: 63 KPHVVDGTCQTCGMVADDSNIVSEITFGESSSGAAVVHGTHVAFDQGGIRGVGGLAFRRV 122
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+RER + + M+Q L IG+S I +A R+Y NF +GRR +
Sbjct: 123 AGGGASEARERSLREVKAMMQQYSYQLRIGQS--ISDIAFRYYKACSHANFVQGRRKQN- 179
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI- 177
+ + +LID ++ L ++V+ LG Y ++ L P +
Sbjct: 180 ---------GENNHKIMLIDLADLLKVDVFALGRGYKD-----FLTRFPEFLTGPRPIVI 225
Query: 178 --FLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 234
+++F +L KV +A I M+ D IT GR+P+G+CGAAL ++A H +
Sbjct: 226 EDLIYRFASKLEFLHDTNKVALSAVRIAKRMQHDNITHGRRPAGICGAALIMAARAHNYR 285
Query: 235 FSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 287
+ ++V IV + AT+ +R+ EF + + LT++DF K L G A + P
Sbjct: 286 RTVREVVYIVKVTMATIQERMDEFASVPAAQLTVQDFH-NKDPLEAGPAHDPP 337
>gi|145536716|ref|XP_001454080.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421824|emb|CAK86683.1| unnamed protein product [Paramecium tetraurelia]
Length = 438
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 22/226 (9%)
Query: 78 MRQMKNALNIGES-DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 136
++Q+ L + E E +A+R + N K + + LY R K+ P+LL
Sbjct: 38 LKQLDLELAVDEEYKEAFEIARRLLKFYKSENSIKN--GQYFAGAALYFGFRCKNAPYLL 95
Query: 137 IDFSNYLNI-NVYELGAVYLQL-------CQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
I+ S + + ++ YL+L +V I + L+ +DPSI++ KF RLL
Sbjct: 96 IEISELIKKESATKVAKCYLKLLKFVKLDAKVPQIVQLAKSLQYIDPSIYIPKFV-RLLE 154
Query: 189 ---GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
+K++ +TA ++ M DW+ GR+PS LCGAAL +SA HG S S + K V
Sbjct: 155 ISRDKHKQIVETAMKLIKRMMLDWMAYGRRPSSLCGAALLISARFHGENVSTSQVCKTVQ 214
Query: 246 ICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGP 291
+C+ T+ KRL EF T LT E F E E + +P GP
Sbjct: 215 VCDETIRKRLAEFNQTGLSQLTREQF-----EQIENIETGIP--GP 253
>gi|71667191|ref|XP_820547.1| transcription factor [Trypanosoma cruzi strain CL Brener]
gi|70885896|gb|EAN98696.1| transcription factor, putative [Trypanosoma cruzi]
Length = 602
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 120/255 (47%), Gaps = 20/255 (7%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVK----NAAGQSQLSGNF--VRTIQSEYGASRERLMEKA 74
+ C CG +++D + F + NA L G+F R + S E A
Sbjct: 20 VTCTLCGDIVQDQQLELDPVFARGEKANARSLRSL-GHFRPTRGVIGTRMPSARPSTEAA 78
Query: 75 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF 134
M + L+I SD++V +A Y +AV N G R + ++ LY CR++
Sbjct: 79 RRGMLSIARQLDI--SDDMVEMAVALYKLAVGLNAVSGARP-SILSAVLYAVCRRERTSH 135
Query: 135 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG---GN 191
++ DFS+ + YE+ + +C+ + L +DPS +H+F +++ G G
Sbjct: 136 MIYDFSDVTGESPYEILSYMRNICEATHTE-----LPVIDPSCMVHRFAEQMNLGPMTGP 190
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
VC A +L +M+ DWI GR+P G+C AA+ V+ + S ++ V + T+
Sbjct: 191 VVVC--ALKVLRAMRDDWIACGRRPMGVCVAAILVACYMFNIPRSPDEVCGFVRLTAGTI 248
Query: 252 MKRLIEFENTDSGSL 266
MKRL EF +T + L
Sbjct: 249 MKRLDEFASTTTAGL 263
>gi|302423884|ref|XP_003009772.1| transcription factor tfiiib complex subunit brf1 [Verticillium
albo-atrum VaMs.102]
gi|261352918|gb|EEY15346.1| transcription factor tfiiib complex subunit brf1 [Verticillium
albo-atrum VaMs.102]
Length = 681
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 129/282 (45%), Gaps = 31/282 (10%)
Query: 3 WCSSCA-----RHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV- 56
WC +H T + D C CG++ E+ N E F + ++G + + G+++
Sbjct: 15 WCPRAGPKCPNKHCTNPKVVDG--ICHGCGRIAEESNIVAEVQFGETSSGAAMVQGSYIS 72
Query: 57 ------RTIQSEYGASRERLMEKAFDDMRQMKNA----LNIGESDEIVHVAKRFYGIAVA 106
RT + +K D + + + L IV A + +A+
Sbjct: 73 ADQGGARTFGPGGRGAGSSQRDKTIIDAKNLIHGYVWRLAGNPRPHIVDKAVATFKLAMG 132
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKP---------FLLIDFSNYLNINVYELGAVYLQL 157
+ FT+GR + V A+C+Y A R + + +++D ++ +NV+ LG + L
Sbjct: 133 QGFTQGRTLQMVCAACIYYAFRSQERVEGNERETQFVMMLDLADLTRLNVFRLGRCFKAL 192
Query: 158 CQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKP 216
+ I ++ + P +H+ +L G KV + A ++ SM+RDWI GR+P
Sbjct: 193 VNKVPIG---SLACTIFPEDIIHRLATKLDFGPQTDKVAEDAVRLITSMRRDWIIMGRRP 249
Query: 217 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
SG+CGA L ++A + + + ++V IV + T+ +R+ E
Sbjct: 250 SGICGACLLMAARMNNFRRTMREVVYIVKVTSHTIQERMKEI 291
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 29/129 (22%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
D F+D D EV L + EE K+I+W N+++L + +E LEA
Sbjct: 495 DEFAD--DVEVMNALLSPEEVKLKEIVWVNENQDWLRKNQQREF-----DRKLEAGKPKR 547
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 533
P +++ + R EA+ S PA T +EA + ++ +S ++N
Sbjct: 548 P---------------------RKRNKPRLGEAQTS-PASTPIEAAQNVMKHHGMSKRLN 585
Query: 534 YDVLEKLFD 542
YD + L +
Sbjct: 586 YDAISSLLN 594
>gi|407847988|gb|EKG03518.1| hypothetical protein TCSYLVIO_005435 [Trypanosoma cruzi]
Length = 602
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 125/261 (47%), Gaps = 21/261 (8%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVK----NAAGQSQLSGNF--VRTIQSEYGASRERLMEKA 74
+ C CG +++D + F + NA L G+F R + S E A
Sbjct: 20 VTCTLCGDIVQDQQLELDPVFARGEKANARSLRSL-GHFRPTRGVIGTRMPSARPSTEAA 78
Query: 75 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF 134
M + L+I SD++V +A Y +AV N G R + ++ LY CR++
Sbjct: 79 RRGMLSIARQLDI--SDDMVEMAVALYKLAVGLNAVSGARP-AILSAVLYAVCRRERTSH 135
Query: 135 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG---GN 191
++ DFS+ + YE+ + +C+ + L +DPS +H+F +++ G G
Sbjct: 136 MIYDFSDVAGESPYEILSYMRNICEATHTE-----LPVIDPSCMVHRFAEQMNLGPMTGP 190
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
VC A +L +M+ DWI GR+P G+C AA+ V+ + S ++ V + T+
Sbjct: 191 VVVC--ALKVLRAMRDDWIACGRRPMGVCVAAILVACYMFNIPRSPDEVCGFVRLTAGTI 248
Query: 252 MKRLIEFENTDSGSL-TIEDF 271
MKRL EF +T + L +I+++
Sbjct: 249 MKRLDEFASTTTAGLQSIDEY 269
>gi|407408753|gb|EKF32070.1| hypothetical protein MOQ_004090 [Trypanosoma cruzi marinkellei]
Length = 602
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 119/254 (46%), Gaps = 18/254 (7%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKN--AAGQSQLSGNFVRTIQSEYGA---SRERLMEKAF 75
+ C CG +++D + F + A +S S R + G S E A
Sbjct: 20 VTCTLCGDIVQDQQLELDPVFARGEKANTRSLRSLGHFRPTRGVIGTRMPSARPSTEAAR 79
Query: 76 DDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 135
M + L+I SD++V +A Y +AV N G R + ++ LY CR++ +
Sbjct: 80 RGMLSIARQLDI--SDDMVEMAVALYKLAVGLNAVSGARP-AILSAVLYAVCRRERTSHM 136
Query: 136 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG---GNK 192
+ DFS+ + YE+ + +C+ + L +DPS +H+F +++ G G
Sbjct: 137 IYDFSDVTGESPYEILSYMRNICEATHTE-----LPVIDPSCMVHRFAEQMNLGSMTGPV 191
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 252
VC A +L +M+ DWI GR+P G+C +A+ V+ + S ++ V + T+M
Sbjct: 192 VVC--ALKVLRAMRDDWIACGRRPMGVCVSAILVACYMFNIPRSPDEVCGFVRLTAGTIM 249
Query: 253 KRLIEFENTDSGSL 266
KRL EF +T + L
Sbjct: 250 KRLDEFASTTTAGL 263
>gi|361127358|gb|EHK99329.1| putative Transcription factor IIIB 60 kDa subunit [Glarea
lozoyensis 74030]
Length = 775
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 124/265 (46%), Gaps = 41/265 (15%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-------------EYGASRE 68
C CG V++D N +E F +N++G + + G+++ Q G RE
Sbjct: 74 ICMGCGTVIDDSNIVSEVQFGENSSGAAVVQGSYLGADQGGVRSSGPGLRGMGNEGEGRE 133
Query: 69 RLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 128
+ M Q+ L+I ES + H + +AV NF +GRRTE V A
Sbjct: 134 ATIRDGKRIMNQLAQQLHIQES-TVTH-GVQILKLAVMNNFIQGRRTEMVCAP------- 184
Query: 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 188
NV++LG + L + + + + V P + +F +L
Sbjct: 185 ---------------QCNVFKLGRTFKALHTSVTL---NGGIYPVVPEDLIWRFAAKLEF 226
Query: 189 GG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +KV + A ++ M DW+ GR+PSG+CGA L ++A + + + +++V IV +
Sbjct: 227 GQLTEKVAEDAVRMVQRMSLDWMVVGRRPSGVCGACLILAARMNNFRRTITEVVYIVKVT 286
Query: 248 EATLMKRLIEFENTDSGSLTIEDFM 272
T+ KRL EF+ T + +LT+++F+
Sbjct: 287 THTIQKRLDEFKMTPTSNLTVDEFL 311
>gi|116195418|ref|XP_001223521.1| hypothetical protein CHGG_04307 [Chaetomium globosum CBS 148.51]
gi|88180220|gb|EAQ87688.1| hypothetical protein CHGG_04307 [Chaetomium globosum CBS 148.51]
Length = 775
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 118/251 (47%), Gaps = 23/251 (9%)
Query: 22 CCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY---------------GAS 66
C CG+V+ + N E TF ++A G + + G+++ Q GAS
Sbjct: 72 ACQNCGRVVWESNIVAEVTFGESANGAAVVHGSYLAADQGGIRPTAGGLAFRRVAGAGAS 131
Query: 67 --RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
RER + +A M Q + L I + + A + Y A NF +GRR V A C+Y
Sbjct: 132 EARERSLREAKQLMNQFAHQLQI--APLVAEKAFQVYKFASNSNFIQGRRKNTVAAVCVY 189
Query: 125 LACRQK-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
CR++ + +LID ++ + +V+ LG Y L L D + K + + +F
Sbjct: 190 AVCRKEDNNKVMLIDLADIIKTDVFLLGRSYKDLLAAL--PDMKDGTKPIIIEDLIFRFA 247
Query: 184 DRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 242
+L KV +A I M+ D IT GR+P+G+CGAAL ++A H + + ++V
Sbjct: 248 TKLEFLHDTNKVALSAIRIAQRMRHDNITHGRRPAGICGAALIMAARAHNYRRTVREVVY 307
Query: 243 IVHICEATLMK 253
I + TL +
Sbjct: 308 IAKVTMTTLQE 318
>gi|342185178|emb|CCC94661.1| putative transcription factor [Trypanosoma congolense IL3000]
Length = 612
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 126/269 (46%), Gaps = 23/269 (8%)
Query: 9 RHVTGHRPYD---SQLCCDRCGKVLEDHNFSTEATFVK-NAAGQSQLSGNFVRTIQSEYG 64
RH T + D + C CG V+ D F + F + + A + + G+ ++ G
Sbjct: 5 RHPTSAQYTDRGSGTVTCTLCGDVMSDPQFELDPVFSRGDKASRLRALGH----LRPALG 60
Query: 65 ASRERL------MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+ RL +E A M + L++G D++V A Y +AV N G R V
Sbjct: 61 SVAPRLPSARPSVEAARRGMATIARQLDVG--DDMVESALGLYKLAVNLNAVTGARP-VV 117
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
++ LY+ CR++ ++ DF++ + + YE+ A +C+ + DPS
Sbjct: 118 LSAVLYVMCRRERTSHMVFDFADAIGESPYEILAYMHHICEA-----TRTTIPVADPSCL 172
Query: 179 LHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+H+F +++ L + V A +L +M DWI GR+P G+C AAL V+ + S
Sbjct: 173 VHRFAEQMNLGNMTRPVIICALKVLRAMHDDWIACGRRPLGVCVAALLVACYMFNIPRSP 232
Query: 238 SDIVKIVHICEATLMKRLIEFENTDSGSL 266
++ +V + T+ +RL EF T++ L
Sbjct: 233 DEVCGLVRLTAGTITRRLDEFAETNTADL 261
>gi|389601476|ref|XP_001565544.2| putative transcription factor [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505058|emb|CAM39038.2| putative transcription factor [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 696
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 136/294 (46%), Gaps = 31/294 (10%)
Query: 5 SSCARHVTGHRPYDSQ---LCCDRCGKVLEDHNFSTEATFVKNA-------AGQSQLSGN 54
SSCA H T D Q C CG V+ + + + F + A G L+G+
Sbjct: 2 SSCA-HPTSALFVDRQNGRTTCTICGDVVMGNQYELDPVFAQGARQPTSAGGGFRSLTGS 60
Query: 55 FVRTIQSEYGASRERL-------MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR 107
F R S G + + ++KA +M + L I S++ V A Y +A+
Sbjct: 61 F-RPATSYKGTNTSMVNTHSRPTIDKARREMLNISRQLEI--SEDTVERALGIYKVALNL 117
Query: 108 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 167
N G R V +CLY ACR++ ++ DFS + + + L Q+ YI +
Sbjct: 118 NVVSGTRP-SVLCACLYAACRRERTSHVIYDFSETNGEDPHTI------LSQLKYICHAT 170
Query: 168 NV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALY 225
+ + +DPS ++ +F +++ L K V A +L +M+ DWI+ GR+P G+C AAL
Sbjct: 171 HTEVPVIDPSCYVQRFAEQMDLGPQTKDVVVCALKVLRAMQDDWISCGRRPMGVCAAALL 230
Query: 226 VSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL-TIEDFMARKKEL 278
V+ G+ + + +V + T+ KRL EF T + L I+D+ + L
Sbjct: 231 VACYVFGISRTPEQVCGMVRLTSNTIGKRLTEFAATPTARLENIDDYQPSNETL 284
>gi|291416192|ref|XP_002724331.1| PREDICTED: transcription initiation factor IIIB, partial
[Oryctolagus cuniculus]
Length = 502
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 67/99 (67%), Gaps = 1/99 (1%)
Query: 175 PSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
P +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H
Sbjct: 1 PCLYIPRFAHLLEFGERNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDF 60
Query: 234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
+ + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 61 RRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFM 99
>gi|291236300|ref|XP_002738078.1| PREDICTED: BRF (transcription factor) homolog family member
(brf-1)-like [Saccoglossus kowalevskii]
Length = 534
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 175 PSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
P +++ +F +L G V TA +++ MKRDW+ TGR+PSGLCGAAL VSA H
Sbjct: 11 PCLYIPRFAHKLEFGDKTHDVSMTALRLVSRMKRDWMHTGRRPSGLCGAALLVSARLHDF 70
Query: 234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
++ +I+++V +C+ATL KRL EFE T S LTI++F
Sbjct: 71 NRTQKEIIRVVKVCDATLRKRLTEFEETPSSRLTIDEF 108
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 26/136 (19%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
DG + + IDD E++ ++ ++ E K IW + N EYL++Q KE +
Sbjct: 295 DGELDLTGIDDSELEKFILSDNEVELKTEIWMKENAEYLKQQKEKEEKEQRDRE------ 348
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 530
+ S+ E ++KR + + A TA EA +ML +K++SS
Sbjct: 349 --------------------LGISKPESKKKRKYKKRVPFQANTAGEAIEKMLQEKKISS 388
Query: 531 KINYDVLEKLFDDSVC 546
KINYDVL L +S C
Sbjct: 389 KINYDVLRDLNRESDC 404
>gi|48735267|gb|AAH71637.1| BRF1 protein, partial [Homo sapiens]
Length = 486
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 59/82 (71%)
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 250
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+T
Sbjct: 9 NHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCEST 68
Query: 251 LMKRLIEFENTDSGSLTIEDFM 272
L KRL EFE+T + LTI++FM
Sbjct: 69 LRKRLTEFEDTPTSQLTIDEFM 90
>gi|146088536|ref|XP_001466078.1| putative transcription factor [Leishmania infantum JPCM5]
gi|398016374|ref|XP_003861375.1| transcription factor, putative [Leishmania donovani]
gi|134070180|emb|CAM68513.1| putative transcription factor [Leishmania infantum JPCM5]
gi|322499601|emb|CBZ34675.1| transcription factor, putative [Leishmania donovani]
Length = 703
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 126/272 (46%), Gaps = 26/272 (9%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNA------AGQSQLSGNFVRTIQSEYGA------SRER- 69
C CG V+ + + F ++ G L+G+F R S G S R
Sbjct: 22 CTLCGDVVMSDQYELDPIFAQSGRQPASGGGLRGLAGSF-RPATSHTGTNTSMTHSHSRP 80
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++KA +M + L I S++ V A Y +A+ N G R V +CLY ACR+
Sbjct: 81 TIDKARREMLNISRQLEI--SEDTVERALGIYKVALNLNAVSGTRP-SVLCACLYAACRR 137
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-L 187
+ ++ DFS + + + L Q+ YI ++ + +DPS ++ +F +++ L
Sbjct: 138 ERTSHVIYDFSEVNGEDPHTI------LSQMKYICHATHTEVPVIDPSCYVQRFAEQMDL 191
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
V A +L +M+ DWI+ GR+P G+C AAL V+ G+ + + +V +
Sbjct: 192 GPQTTDVVVCALKVLRAMQDDWISCGRRPMGVCAAALLVACYVFGISRTPEQVCGMVRLT 251
Query: 248 EATLMKRLIEFENTDSGSL-TIEDFMARKKEL 278
T+ KRL EF T + L I+D+ + L
Sbjct: 252 SNTIGKRLTEFAATPTARLENIDDYQPSHETL 283
>gi|401423221|ref|XP_003876097.1| putative transcription factor [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492338|emb|CBZ27612.1| putative transcription factor [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 703
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 126/272 (46%), Gaps = 26/272 (9%)
Query: 23 CDRCGKVLEDHNFSTEATFVK------NAAGQSQLSGNFVRTIQSEYGASRERL------ 70
C CG V+ + + F + + G L+G+F R S G + +
Sbjct: 22 CTICGDVVMSDQYELDPIFAQGGRQPASGGGLRGLAGSF-RPATSYKGTNTSMIHSHSRP 80
Query: 71 -MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++KA +M + L I S++ V A Y +A+ N G R V +CLY ACR+
Sbjct: 81 TIDKARREMLNISRQLEI--SEDTVERALGIYKVALNLNAVSGTRP-SVLCACLYAACRR 137
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-L 187
+ ++ DFS + + + L Q+ YI ++ + +DPS ++ +F +++ L
Sbjct: 138 ERTSHVIYDFSELNGEDPHTI------LSQMKYICHATHTEVPVIDPSCYVQRFAEQMDL 191
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
V A +L +M+ DWI+ GR+P G+C AAL V+ G+ + + +V +
Sbjct: 192 GPQTTDVVVCALKVLRAMQDDWISCGRRPMGVCAAALLVACYVFGISRTPEQVCGMVRLT 251
Query: 248 EATLMKRLIEFENTDSGSL-TIEDFMARKKEL 278
T+ KRL EF T + L I+D+ + L
Sbjct: 252 SNTIGKRLTEFAATPTARLENIDDYQPSHETL 283
>gi|157870494|ref|XP_001683797.1| putative transcription factor [Leishmania major strain Friedlin]
gi|68126864|emb|CAJ04697.1| putative transcription factor [Leishmania major strain Friedlin]
Length = 703
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 126/272 (46%), Gaps = 26/272 (9%)
Query: 23 CDRCGKVLEDHNFSTEATFVK------NAAGQSQLSGNFVRTIQSEYGA------SRER- 69
C CG V+ + + F + + G L+G+F R S G S R
Sbjct: 22 CTICGDVVTTDQYELDPIFAQGGRQPASGGGLRGLAGSF-RPATSYKGTHTGVIHSHSRP 80
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
++KA +M + L I S++ V A Y +A+ N G R V +CLY ACR+
Sbjct: 81 TIDKARREMLNISRQLEI--SEDTVERALGIYKVALNLNAVSGTRP-SVLCACLYAACRR 137
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-L 187
+ ++ DFS + + + L Q+ YI ++ + +DPS ++ +F +++ L
Sbjct: 138 ERTSHVIYDFSEINGEDPHTI------LSQMKYICHATHTEVPVIDPSCYVQRFAEQMDL 191
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
V A +L +M+ DWI+ GR+P G+C AAL V+ G+ + + +V +
Sbjct: 192 GPQTTDVVVCALKVLRAMQDDWISCGRRPMGVCAAALLVACYVFGISRTPEQVCGMVRLT 251
Query: 248 EATLMKRLIEFENTDSGSL-TIEDFMARKKEL 278
T+ KRL EF T + L I+D+ + L
Sbjct: 252 SNTIGKRLTEFAATPTARLENIDDYQPSHETL 283
>gi|22035558|ref|NP_663718.1| transcription factor IIIB 90 kDa subunit isoform 3 [Homo sapiens]
gi|9909702|emb|CAC04513.1| transcription factor II B-related factor [Homo sapiens]
gi|119602313|gb|EAW81907.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_b
[Homo sapiens]
gi|119602315|gb|EAW81909.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_b
[Homo sapiens]
gi|119602318|gb|EAW81912.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_b
[Homo sapiens]
Length = 473
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 257 EFENTDSGSLTIEDFM 272
EFE+T + LTI++FM
Sbjct: 62 EFEDTPTSQLTIDEFM 77
>gi|156062930|ref|XP_001597387.1| hypothetical protein SS1G_01581 [Sclerotinia sclerotiorum 1980]
gi|154696917|gb|EDN96655.1| hypothetical protein SS1G_01581 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 708
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 131/274 (47%), Gaps = 46/274 (16%)
Query: 15 RPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA--------- 65
+P C CG V++D N E F ++++G + + G+ V Q GA
Sbjct: 51 KPQIEDGVCHNCGTVVDDSNIVAEIQFGESSSGAAVVQGSHVGADQG--GAQTLGPAFRR 108
Query: 66 ------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
++E + + M+ + N L I E+ +V V + + +A NF +GRRT+ V
Sbjct: 109 AGGGESNKENTLREGKRIMQALANQLGISEN--VVGVGHQIFKLASMNNFIQGRRTDLVA 166
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A +NV+ LG + L + + +A ++ + V P +
Sbjct: 167 A------------------------VNVFTLGRYFKALHKQISLA--TDGILPVLPEDLI 200
Query: 180 HKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
KF +L +KV D A ++ M DW+ GR+PSG+CGA L ++A + + + +
Sbjct: 201 WKFASKLEFYEQTEKVADDAIRMVRRMSLDWMVMGRRPSGVCGACLILAARMNNFRRTVT 260
Query: 239 DIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
++V +V + AT+ KRL EF+ T S +LT+E+F+
Sbjct: 261 EVVYVVKVTTATIQKRLEEFKRTPSSALTVEEFL 294
>gi|296475327|tpg|DAA17442.1| TPA: BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Bos taurus]
Length = 493
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 56/76 (73%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 257 EFENTDSGSLTIEDFM 272
EFE+T + LT+++FM
Sbjct: 62 EFEDTPTSQLTVDEFM 77
>gi|74355107|gb|AAI03862.1| BRF1 protein [Homo sapiens]
Length = 161
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 257 EFENTDSGSLTIEDFM 272
EFE+T + LTI++FM
Sbjct: 62 EFEDTPTSQLTIDEFM 77
>gi|429966286|gb|ELA48283.1| hypothetical protein VCUG_00324, partial [Vavraia culicis
'floridensis']
Length = 165
Score = 93.2 bits (230), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 92/163 (56%), Gaps = 6/163 (3%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-- 61
C +C + S +CC +CG + E+ ++ F +N G SQL+G FVR +
Sbjct: 6 CKACGSTDIDNGYSTSSICCRKCGTLNEELFITSSLNFTENN-GASQLNGQFVRMTDTYA 64
Query: 62 EYGASRERLMEKAFDDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
+ G + R + + Q+KN ++G SDE+ A R+Y +++ N T+GR +
Sbjct: 65 KVGGNIIRTTNQQIQN--QIKNICASLGLSDEVAQSAHRWYKLSLQGNLTRGRNILYTLS 122
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
+C+Y+ CRQ+ P LLIDF++ L+++V+++G +++++ L +
Sbjct: 123 ACIYIVCRQEKTPHLLIDFAHLLDLDVFKIGNIFVRIVVFLNV 165
>gi|170043421|ref|XP_001849386.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
gi|167866782|gb|EDS30165.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
Length = 533
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 174 DPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
+P I++ ++ ++L +V TA+ ++ MK+D I +GR+PSGLCGAAL ++A H
Sbjct: 56 NPCIYIMRYANKLEFADKTHEVSMTAQRLVQRMKKDSIHSGRRPSGLCGAALLIAARMHE 115
Query: 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 273
S SDIV+IV I E+TL KRL+EF T S +LT+++FM+
Sbjct: 116 FSRSPSDIVRIVKIHESTLRKRLVEFGETPSSALTLDEFMS 156
>gi|449449894|ref|XP_004142699.1| PREDICTED: uncharacterized protein LOC101217202 [Cucumis sativus]
Length = 236
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 75/131 (57%), Gaps = 26/131 (19%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
++ D+ D EV+ YL+N +E HYKKIIWE++N++YL++QAAK+
Sbjct: 27 EDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKK----------------- 69
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 533
Q L A+AV K K++Q R EA + PAQ TR M KKRLSSK N
Sbjct: 70 -------QGLNVVGASAVVKKSKKRQ--RKTEAPINMPAQADTGTTREMQIKKRLSSKFN 120
Query: 534 YDVLEKLFDDS 544
+DVL+KLF D+
Sbjct: 121 FDVLDKLFSDT 131
>gi|307188627|gb|EFN73337.1| Transcription factor IIIB 90 kDa subunit [Camponotus floridanus]
Length = 205
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 24/172 (13%)
Query: 173 VDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 231
+DP +++ KF +L G K V TA IL M +D I GR+PSGLCGAAL ++A H
Sbjct: 33 LDPCLYIEKFARKLEFGKETKAVARTATRILQRMNKDSIHIGRRPSGLCGAALLIAARLH 92
Query: 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF--------------MARKK- 276
S +DI+KIV + E+TL KRL+EF +T S +LT+++F ARKK
Sbjct: 93 EFNRSPADIIKIVKVHESTLRKRLMEFGDTPSSALTLDEFETVDLEEEDPPAFKAARKKD 152
Query: 277 -ELHEGVAANLPNNGPKVSGMNEVL---CKHK----DTGKPFACGLCRSCYE 320
E +GV +L K + E + C+ K D G +C + R E
Sbjct: 153 RERLQGVLNSLIAKSAKADLVRESVTNCCRQKDYRIDAGSDISCDVGRMSTE 204
>gi|71754449|ref|XP_828139.1| transcription factor [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833525|gb|EAN79027.1| transcription factor, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 608
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 16/269 (5%)
Query: 5 SSCARHVTGHRPYD---SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
SSC+ H T + D + C CG +++D + F + G + +R +
Sbjct: 2 SSCS-HPTSAQYVDRARGTITCTLCGDIVQDPQLELDPIFARGDKGGRLRALGHLRPTRG 60
Query: 62 EYGA---SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
S +E A M + L++ SD++V A Y +AV+ N G R +
Sbjct: 61 SVSVRMPSARPSIEAARRGMATIARQLDV--SDDMVEAALGLYKLAVSLNAVSGARP-AI 117
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
+ LY CR++ ++ DF++ + Y++ + +C+ A + V +DPS
Sbjct: 118 LCAVLYAMCRRERTSHMVFDFADATGESPYDILSYMHLVCE----ATRTEV-PVIDPSCV 172
Query: 179 LHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
+H+F +++ L + V A +L +M DWI GR+P G+C AAL V+ + S
Sbjct: 173 VHRFAEQMNLGQMTRSVVVCALKVLRAMHDDWIACGRRPLGVCVAALLVACYMFNIPRSP 232
Query: 238 SDIVKIVHICEATLMKRLIEFENTDSGSL 266
++ V + T+ +RL EF T + +L
Sbjct: 233 DEVCGFVRLTAGTISRRLDEFAATSTAAL 261
>gi|337283539|ref|YP_004623013.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
gi|334899473|gb|AEH23741.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
Length = 322
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 42/290 (14%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKV---------------------------------L 30
C +C + PY ++ C CG++ L
Sbjct: 11 CPNCGSTNLVYDPYRGEIYCQNCGEIIQENIIDLRPDYRIFDSNQWKKRSRIGAPESILL 70
Query: 31 EDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALNIG 88
D ST+ ++ G + +R QS S ER + A ++ ++ L +
Sbjct: 71 HDKGLSTDIGIDRSLTGLMREKMYRLRRWQSRLRVSDAAERNLAFALSELDRITAQLKLP 130
Query: 89 ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVY 148
+ E A R Y AV R +GR E V A+C+Y ACR P L + S+ ++
Sbjct: 131 KHVE--EEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISRVDKK 188
Query: 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRD 208
E+G Y + + L + + +K P+ +++KF D L G ++KV A +IL R
Sbjct: 189 EIGRSYRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSEKVRRKAVEILEEAYRK 243
Query: 209 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+T+G+ P+GL AALY+++L G K ++ ++ +I + E T+ R E
Sbjct: 244 GLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEIARVTEVTVRNRYKEL 293
>gi|170043428|ref|XP_001849389.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
gi|167866785|gb|EDS30168.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
Length = 218
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 16/154 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA-------------SRER 69
C CG VLED+ +E F +NA G S G FV + S+ GA SRE
Sbjct: 26 CTNCGSVLEDNIIVSEVQFEENAHGASSAVGQFVAS-DSKGGATAYGKFHVGTGTESREV 84
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+ KA + + + L++ ++ + + F+ +A+ R+ T+GRR + A+C+Y+ CR
Sbjct: 85 TLRKARHGITHLCHQLHL--NNHCIETSCNFFKMALIRHLTRGRRNTHIYAACVYITCRT 142
Query: 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
+ LLID S+ L I YELG YL+L Q L I
Sbjct: 143 EGTSHLLIDISDVLQICCYELGRTYLKLSQALCI 176
>gi|186479065|ref|NP_001117389.1| transcription regulator / translation initiation factor /zinc ion
binding / transcription activator [Arabidopsis thaliana]
gi|332193099|gb|AEE31220.1| transcription regulator / translation initiation factor /zinc ion
binding / transcription activator [Arabidopsis thaliana]
Length = 254
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 218
+LY+ + VDPS F+ +F+++LL G NK+V +TA I+ASMK +W+ TGRKPSG
Sbjct: 1 MLYLTENRKYENLVDPSTFIPRFSNKLLKGAHNKQVVETATHIIASMKSNWMQTGRKPSG 60
Query: 219 LCGAALYVSALTHG 232
+CGAALY +AL+HG
Sbjct: 61 ICGAALYTAALSHG 74
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 95/216 (43%), Gaps = 70/216 (32%)
Query: 331 GGADPPAFQVAERERMV-KASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTTQTA 389
GG+DPP+FQ AE+ERM KAS EEN DK Q+
Sbjct: 74 GGSDPPSFQRAEKERMEEKASTEEN---------------DKQQN--------------- 103
Query: 390 SNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYL 449
SD S SD+DD E+D Y N +E H +II++ N Y
Sbjct: 104 --------------------SDESSTLSDLDDGELDCYFRNPKEVHLVEIIFDHENPGYD 143
Query: 450 EEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS 509
E++AA A A EAS AA AKSRK+K+Q+RA E KN+
Sbjct: 144 EKEAAALNACNNASNLFEAS------------------KAAAAKSRKDKRQQRAEEEKNA 185
Query: 510 GPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSV 545
P TA+EA M+ +K+ N D LE+L D S
Sbjct: 186 PPPATAMEAVDSMVKRKKFPD-TNCDYLEELLDTSA 220
>gi|9909700|emb|CAC04512.1| transcription factor II B-related factor [Homo sapiens]
gi|74355580|gb|AAI03860.1| BRF1 protein [Homo sapiens]
Length = 134
Score = 89.7 bits (221), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 257 EFENTDSGSLTIEDFM 272
EFE+T + LTI++FM
Sbjct: 62 EFEDTPTSQLTIDEFM 77
>gi|291236296|ref|XP_002738076.1| PREDICTED: transcription initiation factor IIIB-like [Saccoglossus
kowalevskii]
Length = 205
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV-------RTIQSEY--GASRERLMEK 73
C CG VLED+ +E F +N+ G + + G +V ++ S + G +E
Sbjct: 25 CVACGSVLEDNIIVSEVNFAENSLGGTSVIGQYVSAEGGKSHSLGSSFHHGFGKESRAVT 84
Query: 74 AFDDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 132
+ R++++ + + + A F+ +AV++ T+GR+T V ++CLYL CR +
Sbjct: 85 LLNGKRKIQSLGAQLKLNQHCIDTAYNFFKMAVSKRLTRGRKTSHVVSACLYLVCRTEGT 144
Query: 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
P +L+DFS+ L +NVY LG YL+L L+I
Sbjct: 145 PHMLLDFSDILQVNVYVLGKTYLKLSTELHI 175
>gi|290559596|gb|EFD92924.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 307
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 120/291 (41%), Gaps = 45/291 (15%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLED---------HNFSTE---------------- 38
C SC + +L C CG V+E +F E
Sbjct: 12 CPSCGSESVTYDKSTGELVCQNCGYVIEGDAIDYGREWRSFEDERDEGKGRMGSPLSYAK 71
Query: 39 -----ATFVKNAAGQSQLSGNFVRTI------QSEYGASRERLMEKAFDDMRQMKNALNI 87
+T + A+ +LS RT Q + ER ++ A ++R+ N L++
Sbjct: 72 YDKGTSTVIGKASESIKLSNANRRTFYKLRKWQPRISTAYERNLKFALTELRRASNRLHV 131
Query: 88 GESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINV 147
S+ I A + Y A+ R +GR E V A LY A R+ ++P L + S+ +
Sbjct: 132 --SNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISDTFEVER 189
Query: 148 YELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKR 207
E+G Y LC+ L I + PS +++KF L NK V D + +L +
Sbjct: 190 KEVGKAYRLLCRELGIK-----ILPTSPSDYIYKFASE-LKVSNKTVSDAVK-LLKEAED 242
Query: 208 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+T+G+ P G+ A LYVS L + K ++ D K I E T+ R E
Sbjct: 243 KGLTSGKGPMGIAAAVLYVSTLINKEKKTQRDAAKAAGITEVTIRNRYKEL 293
>gi|126631222|gb|AAI33656.1| BRF1 protein [Homo sapiens]
Length = 184
Score = 89.4 bits (220), Expect = 5e-15, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 257 EFENTDSGSLTIEDFM 272
EFE+T + LTI++FM
Sbjct: 62 EFEDTPTSQLTIDEFM 77
>gi|337283805|ref|YP_004623279.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
gi|334899739|gb|AEH24007.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
Length = 300
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 9/232 (3%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ ++ G + +R QS S ER + A ++ ++ L
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRRWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + E A R Y AV R +GR E V A+C+Y ACR P L + S+ ++
Sbjct: 125 LPKHVE--EEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G Y + + L + + +K P+ +++KF D L G ++KV A +IL
Sbjct: 183 KKEIGRSYRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSEKVRRKAVEILEEAY 237
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
R +T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 238 RKGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|348546031|ref|XP_003460482.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like, partial
[Oreochromis niloticus]
Length = 605
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 64/101 (63%), Gaps = 2/101 (1%)
Query: 174 DPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
DP +++ +F L G +V TA ++ MKRDW+ TGR+PSGLCGAAL ++A H
Sbjct: 8 DPCLYIPRFAHMLEFGAKTHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLIAARMHM 67
Query: 233 LKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFM 272
+ S D++ +V I +A L KRL EFE+ + LTI++FM
Sbjct: 68 FQRSVKDVIGVVKIIYQAILRKRLTEFEDMPTSQLTIDEFM 108
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 29/126 (23%)
Query: 415 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 474
+ DIDD ++D Y+ NE+E K +W + N EYL+EQ K+ K E +YK
Sbjct: 290 DLKDIDDQKIDKYILNEKEVQVKMELWIKQNPEYLKEQEEKQEQINKEKE--EGTYKEKK 347
Query: 475 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 534
+ + ++ TA EA +RML KK +SSKINY
Sbjct: 348 KKSKKRDQIETL---------------------------TAGEAIKRMLEKKIISSKINY 380
Query: 535 DVLEKL 540
DVL L
Sbjct: 381 DVLRDL 386
>gi|357622230|gb|EHJ73794.1| TFIIB-related factor [Danaus plexippus]
Length = 195
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 15/173 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV------- 56
C C P C CG VLED+ E F +NA G + G FV
Sbjct: 6 CKHCGSSEIEVDPARGDAVCTNCGSVLEDNIIVAEVEFQENAHGGASAIGQFVSADSKGG 65
Query: 57 -----RTIQSEYGA-SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
R + G SRE + KA + + + L + + + + +A F+ +A+AR+ T
Sbjct: 66 ASGFGRAFNAGIGQESREITLRKAREGITALCQQLRLNQ--QCIDIACNFFKMALARHLT 123
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
GR++ QA+C+Y+ CR + P LLID S+ L I+ Y+LG Y +L + L I
Sbjct: 124 IGRQSALTQAACVYITCRTEGTPHLLIDISDALQIDCYQLGRTYFKLSKALCI 176
>gi|307192896|gb|EFN75924.1| Transcription factor IIIB 90 kDa subunit [Harpegnathos saltator]
Length = 483
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 59/81 (72%)
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 252
+V TA+ ++ MKRD I +GR+PSGLCGAAL ++A H S +DI+KIV + E+TL
Sbjct: 15 EVSMTAQRVVKRMKRDSIHSGRRPSGLCGAALLIAARLHEFNRSPADIIKIVKVHESTLR 74
Query: 253 KRLIEFENTDSGSLTIEDFMA 273
KRL+EF +T S +LT+++FM
Sbjct: 75 KRLMEFGDTPSSALTLDEFMT 95
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 30/125 (24%)
Query: 416 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 475
+DIDD E+D Y+ +E+E +YK +W+++N EYL
Sbjct: 239 INDIDDEELDSYILSEKESNYKSALWKKVNAEYL-------------------------- 272
Query: 476 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 535
+E + ++KR KN PA TA EA +ML +K++ S INY+
Sbjct: 273 ----VKEKEKEEKRLKETEEGKPEKKRRRTKKNKTPANTAGEAIEKMLQEKKICSLINYE 328
Query: 536 VLEKL 540
L L
Sbjct: 329 ALNIL 333
>gi|18977749|ref|NP_579106.1| transcription initiation factor IIB [Pyrococcus furiosus DSM 3638]
gi|397651869|ref|YP_006492450.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
gi|48429160|sp|P61998.1|TF2B_PYRFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|48429161|sp|P61999.1|TF2B_PYRWO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|1206029|gb|AAC43724.1| TFIIB [Pyrococcus furiosus]
gi|18893488|gb|AAL81501.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|393189460|gb|AFN04158.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
Length = 300
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 114/235 (48%), Gaps = 15/235 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D STE ++ +G + +R QS S ER + A ++ ++ L
Sbjct: 65 LLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 183 KKEIGRSYR------FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILD 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ +T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 235 EAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|14591268|ref|NP_143345.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|6647871|sp|O59151.1|TF2B_PYRHO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|3257906|dbj|BAA30589.1| 300aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 300
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 130/293 (44%), Gaps = 48/293 (16%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDH-----------NFSTEATFVKNAAGQSQLS 52
C C + P ++ C RCG V+E++ + S + A +S L
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 53 GNFVRTIQSEYGASRER--LMEKAFDDMRQMKNALNIG------------ESDEIV---- 94
+ + + ++ G R LM + +R+ ++ L + E D I
Sbjct: 67 HD--KGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 95 ---HV---AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVY 148
HV A R Y AV + +GR E V A+C+Y ACR P L + S+ +
Sbjct: 125 LPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKK 184
Query: 149 ELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 185 EIGRSYR------FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEA 236
Query: 206 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
R +T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 237 YRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|389852789|ref|YP_006355023.1| transcription initiation factor IIB [Pyrococcus sp. ST04]
gi|388250095|gb|AFK22948.1| transcription initiation factor IIB [Pyrococcus sp. ST04]
Length = 261
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 9/232 (3%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ ++ G + +R QS S ER + A ++ ++ + L
Sbjct: 26 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITSQLK 85
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + E A R Y AV + +GR E V A+C+Y ACR P L + S+ +
Sbjct: 86 LPKHVE--EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVE 143
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G Y + + L + + +K P+ +++KF D L G ++KV A +IL
Sbjct: 144 KKEIGRSYRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSEKVRRRAIEILEEAY 198
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
R +T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 199 RRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 250
>gi|344238808|gb|EGV94911.1| Transcription factor IIIB 90 kDa subunit [Cricetulus griseus]
Length = 416
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 144/347 (41%), Gaps = 78/347 (22%)
Query: 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----------------- 273
H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 2 HDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQR 61
Query: 274 --RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 331
R K+L + ++ L ++S + + + +P A G + ++ G +
Sbjct: 62 KLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGALANLSKD----GSGEDS 117
Query: 332 GADPPAFQVAERERMVKASAEENSSFERE-----------SDSPFMSR---VDKVQSPEP 377
P + E E + A++ N F RE D SR ++ + P P
Sbjct: 118 TPSPFCEEDTEDEELEAAASHMNKDFYRELLGDGGGSEGTGDPDGGSRPLALESLLGPLP 177
Query: 378 ERVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEE 433
TA++ G D + +P D + DG + S IDD E+D Y+ NE E
Sbjct: 178 ----------TAASLGISDSIRECISSPSGDPKDTSGDGELDLSGIDDLEIDRYILNESE 227
Query: 434 KHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAK 493
K +W N EYL EQ KEA A K EL
Sbjct: 228 ARVKAELWMRENAEYLREQKEKEARIAKEK------------------ELGIY------- 262
Query: 494 SRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 263 --KEHKPKKSCKRREPILASTAGEAIEKMLEQKKISSKINYSVLRDL 307
>gi|332028619|gb|EGI68654.1| Transcription factor IIIB 90 kDa subunit [Acromyrmex echinatior]
Length = 301
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 64/98 (65%), Gaps = 7/98 (7%)
Query: 178 FLHKFTDRLLPGGNKK--VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
F HK L G+K V TA ++ MKRD I +GR+PSGLCGAAL ++A H
Sbjct: 3 FAHK-----LEFGDKTHTVSMTALRVVQRMKRDSIHSGRRPSGLCGAALLIAARLHEFSR 57
Query: 236 SKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 273
S +DI+KIV + E+TL KRL+EF +T S +LT+++FM
Sbjct: 58 STADIIKIVKVHESTLRKRLLEFGDTPSSALTLDEFMT 95
>gi|45954|emb|CAA50006.1| transcription factor IIB [Pyrococcus woesei]
Length = 261
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 9/232 (3%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D STE ++ +G + +R QS S ER + A ++ ++ L
Sbjct: 26 LLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 85
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 86 LPRHVE--EEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 143
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G Y + + L + + +K P+ +++KF D L G ++KV A +IL
Sbjct: 144 KKEIGRSYRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSEKVRRRAIEILDEAY 198
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ +T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 199 KRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 250
>gi|332157709|ref|YP_004422988.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
gi|331033172|gb|AEC50984.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
Length = 300
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 48/293 (16%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDH-----------NFSTEATFVKNAAGQSQLS 52
C C + P ++ C RCG V+E++ + S + A +S L
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 53 GNFVRTIQSEYGASRER--LMEKAFDDMRQMKNALNIG------------ESDEIV---- 94
+ + + ++ G R LM + +R+ ++ L + E D I
Sbjct: 67 HD--KGLSTDIGIDRTLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 95 ---HV---AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVY 148
HV A R Y AV R +GR E V A+C+Y ACR P L + S+ +
Sbjct: 125 LPKHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKK 184
Query: 149 ELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
E+G Y +IA N+ + V P+ +++KF D L G +++V A +IL
Sbjct: 185 EIGRSY------RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSERVRRRAIEILEEA 236
Query: 206 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ +T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 237 YKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|14520892|ref|NP_126367.1| transcription initiation factor IIB [Pyrococcus abyssi GE5]
gi|13878809|sp|Q9V0V5.1|TF2B_PYRAB RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|5458109|emb|CAB49598.1| TATA box binding protein TFIIB-BBRE complex, chain B [Pyrococcus
abyssi GE5]
gi|380741440|tpe|CCE70074.1| TPA: transcription initiation factor IIB [Pyrococcus abyssi GE5]
Length = 300
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 48/293 (16%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDH-----------NFSTEATFVKNAAGQSQLS 52
C C + P ++ C RCG V+E++ + S + A +S L
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 53 GNFVRTIQSEYGASRER--LMEKAFDDMRQMKNALNIG------------ESDEIV---- 94
+ + + ++ G R LM + +R+ ++ L + E D I
Sbjct: 67 HD--KGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 95 ---HV---AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVY 148
HV A R Y AV + +GR E V A+C+Y ACR P L + S+ +
Sbjct: 125 LPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKK 184
Query: 149 ELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
E+G Y +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 185 EIGRSYR------FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEA 236
Query: 206 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ +T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 237 YKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|388496366|gb|AFK36249.1| unknown [Lotus japonicus]
Length = 121
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 77/131 (58%), Gaps = 16/131 (12%)
Query: 1 MVWCSSCARHVTGHRPYDSQ-LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MV+C +C ++V G R D LCCD CGKVLE++ FS E K + GQS+LSG +VRTI
Sbjct: 1 MVFCDNCVKNVAGVRINDGLILCCDECGKVLENNYFSEE----KISTGQSELSGRYVRTI 56
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
QSEY ASR+R +++ +D+++ + + D + + A FY K RR E+ +
Sbjct: 57 QSEYSASRQRTLDRDYDEIKYLS-----LDDDNLANQALAFY------RQIKQRRAEEAK 105
Query: 120 ASCLYLACRQK 130
+ + L Q+
Sbjct: 106 KTWVLLNLLQR 116
>gi|269986930|gb|EEZ93206.1| transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 307
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 118/293 (40%), Gaps = 45/293 (15%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED---------HNFSTE-------------- 38
+ C SC + +L C CG V+E +F E
Sbjct: 10 IKCPSCGSTSVMYDKTTGELVCQNCGYVIESDTIDYGREWRSFEDERDEGKGRMGSPLSY 69
Query: 39 -------ATFVKNAAGQSQLSGNFVRTI------QSEYGASRERLMEKAFDDMRQMKNAL 85
+T + A+ +LS RT Q + ER ++ A ++R N L
Sbjct: 70 AKYDKGTSTVIGKASESIKLSNANRRTFYKLRKWQPRISTAYERNLKFALTELRHASNRL 129
Query: 86 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145
++ S+ I A + Y A+ R +GR E V A LY A R+ ++P L + S +
Sbjct: 130 HV--SNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISETFEV 187
Query: 146 NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
E+G Y LC+ L I + PS +++KF L G + K A +L
Sbjct: 188 ERKEVGKAYRLLCRELGIK-----ILPSSPSDYIYKFASEL--GVSNKTVSDAVKLLKEA 240
Query: 206 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ +T+G+ P G+ A LYV+ L + K ++ D K I E T+ R E
Sbjct: 241 EDKGLTSGKGPMGIAAAVLYVATLINKEKKTQRDAAKAAGITEVTIRNRYKEL 293
>gi|170583367|ref|XP_001896547.1| Transcription factor TFIIB repeat family protein [Brugia malayi]
gi|158596222|gb|EDP34611.1| Transcription factor TFIIB repeat family protein [Brugia malayi]
Length = 769
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 18/182 (9%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGASRERLM 71
C CG VLE+ ++ F +NA G L G F+ + + + SRE
Sbjct: 24 CMGCGTVLEESTIVSDVAFQENAGGGHSLVGQFISKERGQPTNLSGVPGLSHQESREITY 83
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
K + ++ + L I + V+ A F+ + V+RNFT+GR V A+CLY+ CR ++
Sbjct: 84 YKGRKLIEEIASQLRINQ--HCVNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLEN 141
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 191
LL+DFS+ +NV++LG L + L I L DP +++ +F L G
Sbjct: 142 TAHLLLDFSDITQVNVFDLGRTLNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGAK 196
Query: 192 KK 193
+K
Sbjct: 197 QK 198
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 29/135 (21%)
Query: 410 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 469
S+G + IDD E++ Y+ +EE K W ++N E+L+E + +
Sbjct: 330 SNGELDLEGIDDDEINTYILTKEEVDLKTRFWMKLNGEHLKEMERRRREREEEER----- 384
Query: 470 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGP--AQTALEATRRMLTKKR 527
K K+++R + P A TA EA +++ +K+
Sbjct: 385 ----------------------EKDNSSKKRRRTNGIRKKEPIVAATAQEAMEKVIHEKK 422
Query: 528 LSSKINYDVLEKLFD 542
LS+KINYD+L+++ D
Sbjct: 423 LSNKINYDILKEIED 437
>gi|357622232|gb|EHJ73796.1| TFIIB-related factor [Danaus plexippus]
Length = 458
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 54/76 (71%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
TA ++ MKRD I +GR+PSG+CGAAL ++A H + +D+V+IV I E TL KRL+
Sbjct: 2 TALRLVQRMKRDSIHSGRRPSGVCGAALLIAARLHDFSRTPTDVVRIVKIHETTLRKRLL 61
Query: 257 EFENTDSGSLTIEDFM 272
EF T S +LT+++FM
Sbjct: 62 EFGETPSSALTLDEFM 77
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 27/117 (23%)
Query: 424 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 483
+D + +EE +K ++W +N YL+EQ KE E K EG
Sbjct: 237 LDSLIMTDEEARHKTLLWHNINAGYLKEQKIKE----------EIRAKEREEG------- 279
Query: 484 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
K+K+ + + + K + TA EA +ML +K++SSKINYD+L+ L
Sbjct: 280 ----------KDKKKKTRGSYKKKVAITGATAGEAVGKMLAEKKMSSKINYDILKSL 326
>gi|340058194|emb|CCC52548.1| putative transcription factor, fragment [Trypanosoma vivax Y486]
Length = 537
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 16/226 (7%)
Query: 21 LCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR----TIQSEYGASRERLMEKAFD 76
+ C CG V++D F + F + S +R I ++R + E A
Sbjct: 20 ITCTLCGDVVQDPQFELDPVFARGEKSTRLRSLGHLRPTRGVINLRLSSARPSI-EAARR 78
Query: 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 136
M L + SD++V A Y +AV+ N G R V + LY CR++ ++
Sbjct: 79 GMTSFARQLAV--SDDMVETALAVYKMAVSMNAVSGARP-VVLCAALYAVCRRERTSHMV 135
Query: 137 IDFSNYLNINVYELGAVYLQL-CQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKV 194
DF+ N Y++ + Y+QL C+ + L +DPS +H+F ++L L V
Sbjct: 136 YDFAEVAGENPYDILS-YMQLICETTHTD-----LPVIDPSCMVHRFAEQLNLGHQTAAV 189
Query: 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 240
A +L +M+ DWI GR+P G+C AAL V+ + S ++
Sbjct: 190 VICALKVLRAMRDDWIACGRRPMGVCVAALLVACYMFNIPRSPDEV 235
>gi|315230862|ref|YP_004071298.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183890|gb|ADT84075.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 299
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 9/232 (3%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ +N G + +R QS S ER + A ++ ++ + L
Sbjct: 65 LLHDKGLSTDIGSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + E A R Y AV R +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPKHVE--EEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G + + + L + + +K P+ +++KF D L G ++KV A ++L
Sbjct: 183 KKEIGRSFRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSEKVRRRAIELLEEAY 237
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 238 NRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|223994943|ref|XP_002287155.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976271|gb|EED94598.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 386
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
TA ++A MKRDWI GR+P+G+C AAL +++ HG D+ K++ +C T+M R+
Sbjct: 2 TALRLVARMKRDWIVAGRRPAGICAAALLIASRAHGFDRQHHDVTKVLRVCGLTVMSRVK 61
Query: 257 EFENTDSGSLTIEDF 271
EFE T S LT+E+F
Sbjct: 62 EFEATPSAGLTLEEF 76
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 18/123 (14%)
Query: 423 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 482
EVD H ++E ++ ++ NREY+E Q KE A+AA +A ++
Sbjct: 258 EVDFLFHTDDEVREREAVFNLQNREYIEIQHQKENERLLAEAASKAKQED---------- 307
Query: 483 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ-TALEATRRMLTKKRLSSKINYDVLEKLF 541
+A+ ++ + + A+ P + T EA ++ +++S KINYD + LF
Sbjct: 308 -------EIAQEEGRRRYLKTSRARKRNPNELTTEEALLEVVRTRKISRKINYDAMSALF 360
Query: 542 DDS 544
DD+
Sbjct: 361 DDT 363
>gi|57641215|ref|YP_183693.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|73919861|sp|Q5JGN1.1|TF2B1_PYRKO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|57159539|dbj|BAD85469.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 300
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 116/235 (49%), Gaps = 15/235 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ ++ G + +R QS S ER + A ++ ++ + L+
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLS 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPKHVE--EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G + +IA N+ + V P+ +++KF D L G ++KV A +IL
Sbjct: 183 KKEIGRSF------RFIARHLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILE 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ +T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 235 EAYQRGLTSGKSPAGLVAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|261333929|emb|CBH16923.1| transcription factor IIIb, putative [Trypanosoma brucei gambiense
DAL972]
Length = 543
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 9/197 (4%)
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+E A M + L++ SD++V A Y +AV+ N G R + + LY CR++
Sbjct: 8 IEAARRGMATIARQLDV--SDDMVEAALGLYKLAVSLNAVSGARP-AILCAVLYAMCRRE 64
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 189
++ DF++ + Y++ + +C+ A + V +DPS +H+F +++ L
Sbjct: 65 RTSHMVFDFADATGESPYDILSYMHLVCE----ATRTEV-PVIDPSCVVHRFAEQMNLGQ 119
Query: 190 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 249
+ V A +L +M DWI GR+P G+C AAL V+ + S ++ V +
Sbjct: 120 MTRSVVVCALKVLRAMHDDWIACGRRPLGVCVAALLVACYMFNIPRSPDEVCGFVRLTAG 179
Query: 250 TLMKRLIEFENTDSGSL 266
T+ +RL EF T + +L
Sbjct: 180 TISRRLDEFAATSTAAL 196
>gi|429963838|gb|ELA45836.1| hypothetical protein VCUG_02677, partial [Vavraia culicis
'floridensis']
Length = 247
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Query: 173 VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
+DPS+FLH+F +L N+K+ A +++ MKRDWI GR+P+ LCGAAL ++ +G
Sbjct: 5 IDPSLFLHRFFAKL-KLKNEKILFFAMRLISRMKRDWIVVGRRPNNLCGAALVTASRVYG 63
Query: 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
+ S ++VK V + T+ RL E +T S +LT+ DF
Sbjct: 64 EERSVLEVVKAVRVSPHTINIRLKEMCDTQSANLTVSDFF 103
>gi|2392147|pdb|1AIS|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 200
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 97 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 156
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 33 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR- 91
Query: 157 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 213
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 92 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 144
Query: 214 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 145 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 189
>gi|6573567|pdb|1D3U|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 201
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 97 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 156
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 34 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR- 92
Query: 157 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 213
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 93 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 145
Query: 214 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 146 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 190
>gi|242018725|ref|XP_002429824.1| transcription initiation factor IIB, putative [Pediculus humanus
corporis]
gi|212514842|gb|EEB17086.1| transcription initiation factor IIB, putative [Pediculus humanus
corporis]
Length = 184
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 16 PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA---------- 65
P C CG VLE + + F NA G S G FV + S+ GA
Sbjct: 18 PARGDAVCTNCGSVLESNIIVSSVQFEDNAHGGSTAIGQFVAS-DSKGGARSFGGSFHTG 76
Query: 66 ----SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQAS 121
S+E + A + + + + + + + +A F+ +A++R+ T+GR+T V A+
Sbjct: 77 LGVESKEITLRNAKKKITDLAHQMRLNQ--HCIEIAYNFFKMALSRHLTRGRKTGNVVAA 134
Query: 122 CLYLACRQKSKPFLLIDFSNYLN-INVYELGAVYLQLCQVLYI 163
C+Y+ CR + +LIDF + L+ + VYELG YL+L Q L I
Sbjct: 135 CVYMTCRMEGTAHMLIDFCDVLDTVGVYELGRTYLKLSQALCI 177
>gi|15789908|ref|NP_279732.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235629|ref|YP_001688829.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195246|sp|Q9HRE6.1|TF2B2_HALSA RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10580312|gb|AAG19212.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726695|emb|CAP13481.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 325
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 99/194 (51%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G E+ A Y A++ + GR E V + LY
Sbjct: 134 SKERNLKQALGEIERMASAL--GLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYA 191
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ RQ S P + + +N I+ E Y + + L + + DP+ ++ +F
Sbjct: 192 SARQLSTPRSIDEVANVSRIDEMEFKRTYRYIVRELSLE-----VAPADPAQYVPRFASD 246
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L LP +V +R+++++ + D +T+G+ P GL AA+Y S+L K ++S++ ++
Sbjct: 247 LDLP---DEVERRSRELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSEVT 303
Query: 245 HICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 304 DVSEVTIRNRYQEL 317
>gi|448323476|ref|ZP_21512935.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445599623|gb|ELY53653.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 376
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 95/190 (50%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E + + LY AC
Sbjct: 176 ERNLQFALSEIDRMSSALGVPRS--VREVASVMYRRALSEDLIRGRSIEGMSTAVLYAAC 233
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+ Y + Q L + ++ VDP +L +F +L
Sbjct: 234 RQEGIPRSLSEVTEVSRVENKEIARTYRYVSQELELE-----MRPVDPKKYLPRFCSQL- 287
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
++++ A +I+ + I +G+ P+G AA+Y S+L +G K ++ + ++ +
Sbjct: 288 -DVSERIQSKAEEIIDTSAEQGILSGKSPTGFAAAAIYSSSLLYGEKKTQKQVAEVAQVT 346
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 347 EVTIRNRYQE 356
>gi|242398518|ref|YP_002993942.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
gi|242264911|gb|ACS89593.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
Length = 299
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 113/232 (48%), Gaps = 9/232 (3%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ + +N G + +R QS S ER + A ++ ++ LN
Sbjct: 65 LLHDKGLSTDIGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDRLGARLN 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPKHVE--EEAARLYRDAVKKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADMAKVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G + + + L + + +K P+ +++KF D L G +++ A ++L +
Sbjct: 183 KKEIGRSFRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSERTRRRAIELLDQVY 237
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+T+G+ P+GL AALY++ L G K ++ ++ + + E T+ R E
Sbjct: 238 NMGLTSGKSPAGLVAAALYIAGLLEGEKRTQREVAEAARVTEVTVRNRYKEM 289
>gi|71394065|gb|AAZ32104.1| archaeal transcriptional initiation factor TFB [uncultured
euryarchaeote Alv-FOS5]
Length = 474
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 9/200 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S +S ER + A D+ ++ + L G I A Y AV + +GR E V
Sbjct: 274 RSSIASSIERNLTIAMGDLERISSYL--GLPSNIREAAALLYRKAVEKGLIRGRLIESVV 331
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+ +Y+ CRQ P L + S I E+G Y L + LY+ + +P ++
Sbjct: 332 AAVIYMICRQYGIPRTLDEISEVSGITKKEIGRTYRFLKKELYVD-----VPLTNPIYYV 386
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F L G + KV + A++IL + +GR P+G+ AA+Y++++ G + ++ +
Sbjct: 387 PRFASAL--GLSGKVQEKAKEILNEAVEKGLISGRGPTGVAAAAVYIASVMMGERRTQKE 444
Query: 240 IVKIVHICEATLMKRLIEFE 259
+ ++ + E T+ R E +
Sbjct: 445 VAEVAGVTEVTIRNRYRELK 464
>gi|375083122|ref|ZP_09730154.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
gi|374742208|gb|EHR78614.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
Length = 299
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 113/232 (48%), Gaps = 9/232 (3%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ + +N G + +R QS S ER + A ++ ++ LN
Sbjct: 65 LLHDKGLSTDIGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDRLGARLN 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + E A R Y AV + +G+ E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPKHVE--EEAARLYREAVRKGLIRGKSIESVIAACVYAACRLLKIPRTLDEIADIAKVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G + + + L + + +K P+ +++KF D L G +++ A ++L
Sbjct: 183 KKEIGRSFRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSERTRRRAIELLEKAY 237
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+T+G+ P+GL AALY++ L G K ++ ++ ++ + E T+ R E
Sbjct: 238 GMGLTSGKSPAGLVAAALYIAGLLEGEKRTQREVAEVARVTEVTVRNRYKEM 289
>gi|212224249|ref|YP_002307485.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009206|gb|ACJ16588.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 299
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 9/232 (3%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ +N +G + +R QS S ER + A ++ ++ + L
Sbjct: 65 LLHDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEIADISRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G + + + L + + +K P+ +++KF D L G ++KV A IL
Sbjct: 183 KKEIGRSFRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSEKVRRRAIAILEEAY 237
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+T+G+ P+GL AALY++ L K ++ ++ ++ + E T+ R E
Sbjct: 238 EKGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|307192899|gb|EFN75927.1| Transcription factor IIIB 90 kDa subunit [Harpegnathos saltator]
Length = 190
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 14/172 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE- 62
C +C P C CG VLED +E TF ++ +G + G FV + +
Sbjct: 6 CRNCGSTSIDTDPARGDAVCTNCGFVLEDQLIVSETTFEESPSGHMMVLGQFVASDSTGG 65
Query: 63 ---YGA--------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+GA SR ++ A + + L + ++ V A FY +A++ T+
Sbjct: 66 ATGFGAAYHVNGKESRGITLQNARKGITHLCAQLRL--NNHCVETAMGFYKMALSYRLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
GR+ QA+C+Y+ CR + +LID S+ L I V+ELG Y++ + L+I
Sbjct: 124 GRKQAHNQAACVYITCRTERTSHMLIDISDVLQICVHELGRTYVKFAKALHI 175
>gi|156375641|ref|XP_001630188.1| predicted protein [Nematostella vectensis]
gi|156217204|gb|EDO38125.1| predicted protein [Nematostella vectensis]
Length = 114
Score = 78.6 bits (192), Expect = 8e-12, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 53/75 (70%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
TA +++ MKRDWI GR+PSGLCGAAL V++ H S ++VK+V I + T+ KRL
Sbjct: 2 TALRLVSRMKRDWIHHGRRPSGLCGAALLVASRLHSFNRSVREVVKVVRISDTTIRKRLG 61
Query: 257 EFENTDSGSLTIEDF 271
EF++T S LTI++F
Sbjct: 62 EFKDTPSSQLTIDEF 76
>gi|389851971|ref|YP_006354205.1| transcription initiation factor B [Pyrococcus sp. ST04]
gi|388249277|gb|AFK22130.1| Transcription initiation factor B [Pyrococcus sp. ST04]
Length = 302
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 113/232 (48%), Gaps = 9/232 (3%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY--GASRERLMEKAFDDMRQMKNALN 86
++ D ST KN +G + +R QS G + +R + A ++ ++ + L
Sbjct: 68 LIHDKGLSTNIGSDKNVSGLMREKMYRLRKWQSRLRVGDATDRNLAFALTELDRITSQLK 127
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ + A R Y AV + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 128 LPRY--VKEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVD 185
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G + + + L + + +K P+ ++ KF D L G ++K A +IL
Sbjct: 186 KKEIGRSFRFIARNLNLTPKKLFVK---PTDYVTKFADEL--GLSEKTRRRAVEILEMAY 240
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ IT+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 241 KLGITSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 292
>gi|11498897|ref|NP_070128.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
gi|14195234|sp|O28970.1|TF2B_ARCFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2649280|gb|AAB89947.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
Length = 326
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 97/191 (50%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + +S + A Y AV +N +GR E V A+ LY AC
Sbjct: 135 ERNLAFALSELDRMASALGLPKS--VRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAAC 192
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ P L + + Y ++ E+G Y + + L + L P+ ++ +F L
Sbjct: 193 RQAGVPRTLDEIATYSRVDRKEIGRTYRFITRELGLK-----LMPTSPADYIPRFCAAL- 246
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G + +V A +I+ + +T+GR P+G+ AALYV+++ G + ++ ++ ++ +
Sbjct: 247 -GLSGEVQKKAIEIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVT 305
Query: 248 EATLMKRLIEF 258
E T+ R E
Sbjct: 306 EVTIRNRYKEL 316
>gi|332028617|gb|EGI68652.1| Transcription factor IIIB 90 kDa subunit [Acromyrmex echinatior]
Length = 182
Score = 78.6 bits (192), Expect = 9e-12, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 14/172 (8%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT----I 59
C +C P C CG VLED ++ TF ++++G+ ++ G+FV
Sbjct: 6 CRNCGSTNIETDPGRGDAICIECGFVLEDSVIISQTTFEESSSGKVRVPGHFVANDSTGS 65
Query: 60 QSEYGAS--------RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK 111
+ +GAS R ++ A + + L +G + + + FY +A+ + T+
Sbjct: 66 ATNFGASYYVNGKESRRITLQNARKGITHL--CLQLGLNQNCIETSVNFYKMALCYHLTR 123
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
GR+ QA+C+Y+ CR + +LID S+ L+I V+ELG YL+ L I
Sbjct: 124 GRKQAHNQAACVYITCRIEKTEHMLIDISDVLHICVHELGRTYLRFTTALRI 175
>gi|1729909|sp|P50387.1|TF2B_SULSH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|836952|gb|AAA81380.1| transcription factor TFIIB homolog [Sulfolobus shibatae]
Length = 309
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 101/200 (50%), Gaps = 9/200 (4%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I++ +S +R + +A +++ ++ N LN+ +S + A Y AV + +GR E V
Sbjct: 108 IRARIQSSIDRNLAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESV 165
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ L + + Y N E+ Y L + L ++ + DP +
Sbjct: 166 VAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDY 220
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + + L G + +V TA +I+ K +T G+ P+GL AA+Y+++L H + ++
Sbjct: 221 VTRIANLL--GLSGRVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQK 278
Query: 239 DIVKIVHICEATLMKRLIEF 258
+I ++ + E T+ R E
Sbjct: 279 EIAQVAGVTEVTVRNRYKEL 298
>gi|240103255|ref|YP_002959564.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910809|gb|ACS33700.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 300
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 110/235 (46%), Gaps = 15/235 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ ++ G + +R QS S ER + A ++ ++ + L
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLR 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + + ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G + +IA N+ + V P+ ++ KF D L G ++KV A ++L
Sbjct: 183 KKEIGRSF------RFIARHLNLTPKKLFVKPTDYVSKFADEL--GLSEKVRRRAIELLE 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+T+G+ P+GL AALY++ + G + ++ ++ ++ + E T+ R E
Sbjct: 235 EAYEKGLTSGKSPAGLVAAALYIAGIMEGERRTQREVAEVARVTEVTVRNRYKEL 289
>gi|350525782|ref|YP_004885404.1| transcription initiation factor B [Thermococcus sp. AM4]
gi|345650601|gb|AEO13966.1| Transcription initiation factor B [Thermococcus sp. AM4]
Length = 300
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 110/235 (46%), Gaps = 15/235 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ ++ G + +R QS S ER + A ++ ++ + L
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLR 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + + ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G + +IA N+ + V P+ ++ KF D L G ++KV A ++L
Sbjct: 183 KKEIGRSF------RFIARHLNLTPKKLFVKPTDYVSKFADEL--GLSEKVRRRAIELLE 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+T+G+ P+GL AALY++ + G + ++ ++ ++ + E T+ R E
Sbjct: 235 EAYEKGLTSGKSPAGLVAAALYIAGIMEGERRTQREVAEVARVTEVTVRNRYKEL 289
>gi|315230585|ref|YP_004071021.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183613|gb|ADT83798.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 306
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M A +G I +A Y AV +GR E V A+CLY AC
Sbjct: 115 ERNLAFALSELDRM--ASQLGLPRNIKEMAAALYRKAVMERLIRGRSIEGVTAACLYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L + ++ E+G Y + + L++ L P ++ +F D+L
Sbjct: 173 RMAKVPRTLDEIEEVARVDKKEIGRSYRFIARELHLR-----LTPTSPIDYVSRFADQL- 226
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +++ + A IL + +T+GR P G+ AALY++++ G K ++ ++ ++ H+
Sbjct: 227 -GLSERTKNRAVKILQKAIKLGLTSGRGPMGVAAAALYIASVLEGEKKTQREVAEVAHVT 285
Query: 248 EATLMKRLIEF 258
E T+ R E
Sbjct: 286 EVTVRNRYKEL 296
>gi|331746825|ref|YP_004422862.1| Transcription initiation factor B [Thermococcus barophilus MP]
gi|315185036|gb|ADT85220.1| Transcription initiation factor B [Thermococcus barophilus MP]
Length = 301
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 15/235 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ +N G + +R QS S ER + A ++ ++ + L
Sbjct: 68 LLHDKGLSTDIGSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 127
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y A+ + +GR E V A+C+Y ACR P L + ++ ++
Sbjct: 128 LPRHVE--EEAARLYREAIRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVD 185
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+ + +IA N+ + V P+ +++KF D L G ++KV A ++L
Sbjct: 186 KKEIARSFR------FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIELLE 237
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+T+G+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 238 EAYNRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 292
>gi|409095301|ref|ZP_11215325.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 300
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 15/235 (6%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ ++ G + +R QS S ER + A ++ ++ + L
Sbjct: 65 LLHDKGLSTDIGIDRSVTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASHLA 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y ACR P L + + ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSKVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
E+G + +IA N+ + V PS +++KF D L G ++KV A ++L
Sbjct: 183 KKEIGRSFR------FIARHLNLTPKKLFVKPSDYVNKFADEL--GLSEKVRKRAIELLE 234
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+T+G+ P+GL AALY++ L + ++ ++ ++ + E T+ R E
Sbjct: 235 EAYNRGLTSGKSPAGLVAAALYIAGLMEEERRTQREVAEVARVTEVTVRNRYKEL 289
>gi|390961741|ref|YP_006425575.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390520049|gb|AFL95781.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 299
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 111/232 (47%), Gaps = 9/232 (3%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ +N +G + +R QS S ER + A ++ ++ + L
Sbjct: 65 LLHDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y +CR P L + ++ ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G + + + L + + +K P+ +++KF D L G +++V A IL
Sbjct: 183 KKEIGRSFRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSERVRRRAIAILEEAY 237
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+T+G+ P+GL AALY++ L K ++ ++ ++ + E T+ R E
Sbjct: 238 EKGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|384433900|ref|YP_005643258.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
gi|261602054|gb|ACX91657.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
Length = 306
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 100/200 (50%), Gaps = 9/200 (4%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I++ +S +R + +A +++ ++ N LN+ +S + A Y AV + +GR E V
Sbjct: 105 IRARIQSSIDRNLAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESV 162
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ L + + Y N E+ Y L + L ++ + DP +
Sbjct: 163 VAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDY 217
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + + L G + V TA +I+ K +T G+ P+GL AA+Y+++L H + ++
Sbjct: 218 VTRIANLL--GLSGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQK 275
Query: 239 DIVKIVHICEATLMKRLIEF 258
+I ++ + E T+ R E
Sbjct: 276 EIAQVAGVTEVTVRNRYKEL 295
>gi|341583086|ref|YP_004763578.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810744|gb|AEK73901.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 299
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 111/232 (47%), Gaps = 9/232 (3%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGAS--RERLMEKAFDDMRQMKNALN 86
+L D ST+ +N +G + +R QS S ER + A ++ ++ + L
Sbjct: 65 LLHDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 124
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+ E A R Y AV + +GR E V A+C+Y +CR P L + ++ ++
Sbjct: 125 LPRHVE--EEAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISRVD 182
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G + + + L + + +K P+ +++KF D L G +++V A IL
Sbjct: 183 KKEIGRSFRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GMSERVRRRAIAILEEAY 237
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+T+G+ P+GL AALY++ L K ++ ++ ++ + E T+ R E
Sbjct: 238 DRGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|227827925|ref|YP_002829705.1| transcription initiation factor IIB [Sulfolobus islandicus M.14.25]
gi|227830647|ref|YP_002832427.1| transcription initiation factor IIB [Sulfolobus islandicus
L.S.2.15]
gi|229579555|ref|YP_002837954.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.G.57.14]
gi|229585192|ref|YP_002843694.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.27]
gi|238620152|ref|YP_002914978.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.4]
gi|284998175|ref|YP_003419942.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385773629|ref|YP_005646195.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
gi|385776265|ref|YP_005648833.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|227457095|gb|ACP35782.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
L.S.2.15]
gi|227459721|gb|ACP38407.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.14.25]
gi|228010270|gb|ACP46032.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.G.57.14]
gi|228020242|gb|ACP55649.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.27]
gi|238381222|gb|ACR42310.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.4]
gi|284446070|gb|ADB87572.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|323475013|gb|ADX85619.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|323477743|gb|ADX82981.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
Length = 309
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 100/200 (50%), Gaps = 9/200 (4%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I++ +S +R + +A +++ ++ N LN+ +S + A Y AV + +GR E V
Sbjct: 108 IRARIQSSIDRNLAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESV 165
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ L + + Y N E+ Y L + L ++ + DP +
Sbjct: 166 VAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDY 220
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + + L G + V TA +I+ K +T G+ P+GL AA+Y+++L H + ++
Sbjct: 221 VTRIANLL--GLSGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQK 278
Query: 239 DIVKIVHICEATLMKRLIEF 258
+I ++ + E T+ R E
Sbjct: 279 EIAQVAGVTEVTVRNRYKEL 298
>gi|15897377|ref|NP_341982.1| transcription initiation factor IIB [Sulfolobus solfataricus P2]
gi|284173282|ref|ZP_06387251.1| transcription initiation factor IIB [Sulfolobus solfataricus 98/2]
gi|14195237|sp|P58111.1|TF2B1_SULSO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|13813602|gb|AAK40772.1| Transcription initiation factor IIB (TFIIB) homolog (TFB-1)
[Sulfolobus solfataricus P2]
Length = 309
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 100/200 (50%), Gaps = 9/200 (4%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I++ +S +R + +A +++ ++ N LN+ +S + A Y AV + +GR E V
Sbjct: 108 IRARIQSSIDRNLAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESV 165
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ L + + Y N E+ Y L + L ++ + DP +
Sbjct: 166 VAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDY 220
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + + L G + V TA +I+ K +T G+ P+GL AA+Y+++L H + ++
Sbjct: 221 VTRIANLL--GLSGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQK 278
Query: 239 DIVKIVHICEATLMKRLIEF 258
+I ++ + E T+ R E
Sbjct: 279 EIAQVAGVTEVTVRNRYKEL 298
>gi|296242903|ref|YP_003650390.1| transcription initiation factor IIB [Thermosphaera aggregans DSM
11486]
gi|296095487|gb|ADG91438.1| Transcription initiation factor IIB (TFIIB) [Thermosphaera
aggregans DSM 11486]
Length = 306
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 107/237 (45%), Gaps = 18/237 (7%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLME-------KAFDDMRQMK 82
+ D F+T + A +L G ++ +R R++ +A +++ ++
Sbjct: 69 VHDMGFATAIDYSNKDAAGRKLMGKRQELVKLRKWQARTRILTSMDRNLAQAMNELERLG 128
Query: 83 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
+ LN+ + A R Y AV + +GR E V A+ +Y+ACR+ P L + S +
Sbjct: 129 DLLNL--PSHVKEEAARIYREAVEKGLVRGRSIESVIAAAVYVACRELKVPRSLDEVSRH 186
Query: 143 LNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDI 201
I ++ Y L + L I + DP ++ + L LPG V A ++
Sbjct: 187 TRIGRKDIARCYRLLLRELDIK-----VGTTDPVDYVPRIVHALGLPG---TVVKKAVEL 238
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
L + +T G+ P+GL AA+YV++L G K ++ ++ + + E T+ R E
Sbjct: 239 LNVAREHGVTGGKDPAGLAAAAVYVASLELGEKRTQKEVAHVAGVTEVTVRNRYKEL 295
>gi|238606146|ref|XP_002396638.1| hypothetical protein MPER_03085 [Moniliophthora perniciosa FA553]
gi|215469580|gb|EEB97568.1| hypothetical protein MPER_03085 [Moniliophthora perniciosa FA553]
Length = 136
Score = 77.0 bits (188), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 14/133 (10%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSE-----------YGASRERLM 71
C CG V+E++ E TF + ++G + + G++V S G SRE+ +
Sbjct: 5 CVVCGTVVEENTIVNEVTFGETSSGAAMVQGSYVAQGASHARMGGPYGNRGSGESREQTI 64
Query: 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK- 130
A ++ + N L + E + A R Y +AV FTKGR++ V A CLY+ACRQK
Sbjct: 65 ANASRKIQTIANVLRLSEV--VCMAATRLYTLAVEHKFTKGRKSLNVVAVCLYVACRQKE 122
Query: 131 SKPFLLIDFSNYL 143
++ ++LIDFS+ L
Sbjct: 123 TRNYMLIDFSDLL 135
>gi|448316712|ref|ZP_21506293.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445607127|gb|ELY61021.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 318
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 98/190 (51%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V SCLY+AC
Sbjct: 130 ERNLQFALSEIDRMASALGVPRS--VREVASVVYRRALNEDLIRGRSIEGVSTSCLYVAC 187
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+S P L + ++ + E+G Y + Q L + +K VDP ++ +F L
Sbjct: 188 RQESIPRSLEEVADVSRVEKKEIGRTYRYIAQELSLE-----MKPVDPKEYVPRFCSAL- 241
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V AR+I+ + + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 242 -DSSEEVQAKAREIIDTTAEEGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 300
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 301 EVTIRNRYQE 310
>gi|229581781|ref|YP_002840180.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.N.15.51]
gi|228012497|gb|ACP48258.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.N.15.51]
Length = 309
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 100/200 (50%), Gaps = 9/200 (4%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I++ +S +R + +A +++ ++ N LN+ +S + A Y AV + +GR E V
Sbjct: 108 IRARIQSSIDRNLAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESV 165
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ L + + Y N E+ Y L + L ++ + DP +
Sbjct: 166 VAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDY 220
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + + L G + V TA +I+ K +T G+ P+GL AA+Y+++L H + ++
Sbjct: 221 VTRIANLL--GLSGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQK 278
Query: 239 DIVKIVHICEATLMKRLIEF 258
+I ++ + E T+ R E
Sbjct: 279 EIAQVAGVTEVTVRNRYKEV 298
>gi|257052965|ref|YP_003130798.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691728|gb|ACV12065.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 334
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 17/239 (7%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQSQLSG-----NFVRTIQSEYGA--SRERLMEKAFDDMR 79
K+L D ST + K+A+G++ S + +R + A SR+R +++A ++
Sbjct: 87 KLLHDEGLSTSIGWADKDASGRTLSSSQREKMSRLRVWDERFRATDSRDRNLKQALGEID 146
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + E+ + A Y A+ + GR E + + LY A RQ P L +F
Sbjct: 147 RMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEF 204
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
+ + Y L + L + + DP+ +L +FT L + + AR
Sbjct: 205 EPISRVRRQKYARAYRYLARQLELG-----IAPADPAEYLPRFTSDLDLDDDLER--QAR 257
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
D+L+ +K+ +G+ P+GL A+Y + L G + ++ ++ + + E T+ R E
Sbjct: 258 DLLSELKKTGEHSGKNPTGLAAGAIYAAGLLTGDRITQGEVAETADVSEVTIRDRYSEL 316
>gi|161528132|ref|YP_001581958.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339433|gb|ABX12520.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 302
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY AC
Sbjct: 115 DRNFRQAFSELDRLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L D NI ++ Y L + L + + VDP + + +
Sbjct: 173 RDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPIKCISRIASK-- 225
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G ++K A IL + + + I+ G+ P GL AALYV+ +T+G ++ D+ + +
Sbjct: 226 AGLSEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVT 285
Query: 248 EATLMKR 254
E T+ R
Sbjct: 286 EVTIRNR 292
>gi|407464509|ref|YP_006775391.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047697|gb|AFS82449.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 302
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 9/187 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY AC
Sbjct: 115 DRNFRQAFSELDRLKDKLAVG--DSVIEKAAYIYRKALEKGLVRGRSISALIASALYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L D NI ++ Y L + L + + VDP + + +
Sbjct: 173 RDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK-- 225
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G ++K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + +
Sbjct: 226 AGLSEKTKRKATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVT 285
Query: 248 EATLMKR 254
E T+ R
Sbjct: 286 EVTIRNR 292
>gi|340344517|ref|ZP_08667649.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519658|gb|EGP93381.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 302
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY AC
Sbjct: 115 DRNFRQAFSELDRLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L D + NI ++ Y L + L + + VDP + + +
Sbjct: 173 RDTETPRTLKDIGHASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK-- 225
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G ++K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + +
Sbjct: 226 AGLSEKTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVT 285
Query: 248 EATLMKR 254
E T+ R
Sbjct: 286 EVTIRNR 292
>gi|407462158|ref|YP_006773475.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045780|gb|AFS80533.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 302
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY AC
Sbjct: 115 DRNFRQAFSELDRLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L D NI ++ Y L + L + + VDP + + +
Sbjct: 173 RDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPIKCISRIASK-- 225
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G ++K A IL + + + I+ G+ P GL AALYV+ +T+G ++ D+ + +
Sbjct: 226 AGLSEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVT 285
Query: 248 EATLMKR 254
E T+ R
Sbjct: 286 EVTIRNR 292
>gi|393796884|ref|ZP_10380248.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 302
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 9/187 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY AC
Sbjct: 115 DRNFRQAFSELDRLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L D NI ++ Y L + L + + VDP + + +
Sbjct: 173 RDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK-- 225
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G ++K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + +
Sbjct: 226 AGLSEKTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGESKTQRDVAEAAGVT 285
Query: 248 EATLMKR 254
E T+ R
Sbjct: 286 EVTIRNR 292
>gi|386875527|ref|ZP_10117689.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806627|gb|EIJ66084.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 302
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 9/187 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY AC
Sbjct: 115 DRNFRQAFSELDRLKDKLAVG--DSVIEKAAYIYRKALEKGLVRGRSISALIASALYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L D NI ++ Y L + L + + VDP + + +
Sbjct: 173 RDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK-- 225
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G ++K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + +
Sbjct: 226 AGLSEKTKRKATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVT 285
Query: 248 EATLMKR 254
E T+ R
Sbjct: 286 EVTIRNR 292
>gi|240102532|ref|YP_002958841.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910086|gb|ACS32977.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 303
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 7/159 (4%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E + ++ LY ACR + P L + + + E+G Y + +
Sbjct: 142 LYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARVSKVTKKEIGRSYRFMAR 201
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
L + L+ P ++ +F D L G + K A++IL + IT+G+ P+GL
Sbjct: 202 GLGLN-----LRPTSPIDYVDRFGDAL--GVSSKTKQRAKEILQEAIKRGITSGKGPTGL 254
Query: 220 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 255 AAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 293
>gi|223478727|ref|YP_002582898.1| transcription initiation factor iiB [Thermococcus sp. AM4]
gi|214033953|gb|EEB74779.1| Transcription initiation factor iiB [Thermococcus sp. AM4]
Length = 303
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 7/159 (4%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E + ++ LY ACR + P L + + + E+G Y + +
Sbjct: 142 LYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARVSKVTKKEIGRSYRFMAR 201
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
L + L+ P ++ +F D L G + K A++IL + IT+G+ P+GL
Sbjct: 202 GLGLN-----LRPTSPIDYVDRFGDAL--GVSSKTKQRAKEILQEAIKRGITSGKGPTGL 254
Query: 220 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 255 AAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 293
>gi|167043157|gb|ABZ07866.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW141J13]
Length = 305
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 17/191 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R ++AF+++ ++K+ L++ SD +V A Y A+ + KGR + AS LY AC
Sbjct: 118 DRNFKQAFNELYRLKDKLSL--SDSVVEKAAYIYRKAINKKLVKGRTISSLMASALYAAC 175
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFT 183
R+ P L D S+ NI +L + Y L L + D + + ++ I + + T
Sbjct: 176 REVGTPRTLKDISDTTNIKKRDLASNYRLLVNELDLKIPVVDSVHNVARIASKIGISEKT 235
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
RL A ++L + +T G+ P L ALY+S G +S+ D+ +
Sbjct: 236 KRL-----------ATELLRKAEESELTAGKNPMSLAATALYISCRKTGENYSQRDLAEA 284
Query: 244 VHICEATLMKR 254
+ E T+ R
Sbjct: 285 ASVTEVTIRNR 295
>gi|379335167|gb|AFD03156.1| transcription factor TFIIB cyclin-related protein [uncultured
bacterium W5-77b]
Length = 303
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 9/187 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY AC
Sbjct: 116 DRNFRQAFSELDRLKDKLAVG--DTVIEKAAYIYRKALEKGLVRGRSISALIASALYAAC 173
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R P L D +N NI ++ Y L + L + + V+P + + +
Sbjct: 174 RDTETPRTLKDIANASNIKRKDIARCYRLLLRELGLK-----MPVVNPVNCISRIAS--I 226
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G ++K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + +
Sbjct: 227 AGLSEKTKREASKILKNAEEVKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVT 286
Query: 248 EATLMKR 254
E T+ R
Sbjct: 287 EVTIRNR 293
>gi|47216762|emb|CAG03766.1| unnamed protein product [Tetraodon nigroviridis]
Length = 514
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 158/398 (39%), Gaps = 128/398 (32%)
Query: 223 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM---------- 272
AL V+A H + + +IV IV +CE TL KRL EF +T + LTIE+FM
Sbjct: 76 ALLVAARMHDFRRTTKEIVGIVKVCEQTLRKRLTEFGDTPTSQLTIEEFMKVDLDQECDP 135
Query: 273 ---------ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKD-------TGKP------- 309
R ++LH ++A + P S + +C ++D T +P
Sbjct: 136 PCFTSGLQKKRIQQLHPKLSACVHAASPSSS---DEICSYQDEIDSELQTSRPKLRGVYA 192
Query: 310 -FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSR 368
+A G C+S E+ +G E E ++A A+ F ++ + +
Sbjct: 193 AYARGDCKSLGEDSACKPDGSE-------------EDDLQAVAK---YFGKDLEELTLEA 236
Query: 369 VDKVQSPEPER----------VPKNCTTQTASNEGEGDHTKT---PGVDATTE-----AS 410
+ K++ P P+ VP+ AS G T G + E +S
Sbjct: 237 LIKLEQPRPQEEEEEEEEEDAVPRRKAPSLASILGPMPSAATLDCRGDEKEKEKENGGSS 296
Query: 411 DGSD-NFSDIDDFEVD-------------------------GYLHNEEEKHYKKIIWEEM 444
DG + + S IDD E++ YL +E E K +W
Sbjct: 297 DGGELDLSGIDDQEIELVRPRRRSRPQALLAVPLTLSSACLQYLLSEHEVKVKTALWMAE 356
Query: 445 NREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA 504
N +YL+EQ KEA A K EL K++KR
Sbjct: 357 NSDYLKEQREKEAKIAKEK------------------ELGLY-----------KEKKRRG 387
Query: 505 EAKNSGP--AQTALEATRRMLTKKRLSSKINYDVLEKL 540
++ P A +A EA +ML +K++SSKINYDVL+ L
Sbjct: 388 PSRKRPPIRAGSADEAIGKMLEQKKISSKINYDVLKDL 425
>gi|385805988|ref|YP_005842386.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
gi|383795851|gb|AFH42934.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
Length = 316
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I+S +S +R + +A +++ ++ N L++ + + A Y AV + +GR E V
Sbjct: 114 IRSRIQSSIDRNLAQAMNELDRLSNQLHLNRA--VREEAAVIYRKAVEKGLVRGRSIESV 171
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y+ACR K P L + S + N E+ Y L + L + + DP +
Sbjct: 172 IAASVYVACRLKKLPRTLDEISLHTRANRKEIARCYRLLVKELQLK-----VPIADPIDY 226
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ + L G K + A I+ K+ +T G+ P+GL AA+YV+ L K ++
Sbjct: 227 IPRMGSLLDLSG--KAMNIAARIVKIAKQKALTAGKDPAGLAAAAIYVATLLENEKRTQK 284
Query: 239 DIVKIVHICEATLMKRLIEFEN 260
+I I + E T+ R E N
Sbjct: 285 EIANIAGVTEVTVRNRYKELVN 306
>gi|393796305|ref|ZP_10379669.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 287
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 12/206 (5%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ AS +R + +A ++ ++K+ L + SD +V A Y A+ + +GR +
Sbjct: 90 RSKVHASSDRNLRQALSELTRLKDKLAV--SDAVVEKAAYIYRKALDKGLVRGRSISALI 147
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
AS LY ACR P L D S+ NI ++ Y L Q L + + VDP +
Sbjct: 148 ASALYAACRDTETPRTLKDVSDAGNIKKKDIARCYRILHQELELK-----MPVVDPIQCI 202
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ +L G ++K A +L + + + G+ P GL AALY+S +++ ++ D
Sbjct: 203 ARIASKL--GISEKTKRYAVKVLKTAQEHEESAGKDPMGLAAAALYLSCVSNSENMTQRD 260
Query: 240 IVKIVHICEATLMKR---LIEFENTD 262
I + + E T+ R L +NTD
Sbjct: 261 IAEAASVTEVTIRNRYKGLRMDQNTD 286
>gi|169599398|ref|XP_001793122.1| hypothetical protein SNOG_02518 [Phaeosphaeria nodorum SN15]
gi|160704598|gb|EAT90730.2| hypothetical protein SNOG_02518 [Phaeosphaeria nodorum SN15]
Length = 348
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL-----KQVDPSIFLH 180
A RQ +L+D + + +NV+ LG Y + L D + ++ ++++P +
Sbjct: 3 ARRQTEITLMLMDLAEKIQVNVWALGDTYKSFLKKLGENDPAQLVGNTAVQEIEP--LML 60
Query: 181 KFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
K+ +L G + +V A IL MKRDW+ GR+P+GLCGA + ++A + + + +
Sbjct: 61 KYCRKLEFGDDSFRVAADACKILKRMKRDWMVQGRQPAGLCGACIILAARMNNFRRTVRE 120
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
+V +V + ++T+ RL E++ T S LTI F
Sbjct: 121 VVYVVKVADSTINSRLYEYKQTPSSVLTINQF 152
>gi|354611558|ref|ZP_09029514.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196378|gb|EHB61880.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 325
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G E+ A Y A++ + GR E V S LY
Sbjct: 134 SKERNLKQALGEIERMSSAL--GLPKEVRETASVIYRRALSEDLLPGRSIEGVATSALYA 191
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P + + +N I+ E Y + + L + + DP+ ++ +F
Sbjct: 192 AARQMQTPRSIDEVANVSRIDAMEFKRTYRYIVRELGLE-----VAPADPASYVPRFASE 246
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L LP +V AR++L + ++D +T+G+ P GL AA+Y ++L K ++S + +
Sbjct: 247 LDLP---DEVERRARELLDNAQKDGVTSGKSPVGLAAAAIYAASLLTNHKVTQSQVSDVT 303
Query: 245 HICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 304 DVSEVTIRNRYQEL 317
>gi|329764659|ref|ZP_08256266.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329138857|gb|EGG43086.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 287
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 12/206 (5%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ AS +R + +A ++ ++K+ L + SD +V A Y A+ + +GR +
Sbjct: 90 RSKVHASSDRNLRQALSELTRLKDKLAV--SDAVVEKAAYIYRKALDKGLVRGRSISALI 147
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
AS LY ACR P L D S+ NI ++ Y L Q L + + VDP +
Sbjct: 148 ASALYAACRDTETPRTLKDVSDAGNIKKKDIARCYRILHQELELK-----MPVVDPIQCI 202
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ +L G ++K A +L + + + G+ P GL AALY+S +++ ++ D
Sbjct: 203 ARIASKL--GISEKTKRYAVKVLKTAQEHEESAGKDPMGLAAAALYLSCVSNSENMTQRD 260
Query: 240 IVKIVHICEATLMKR---LIEFENTD 262
I + + E T+ R L +NTD
Sbjct: 261 IAEAASVTEVTIRNRYKGLRMDQNTD 286
>gi|167045037|gb|ABZ09701.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8G15]
Length = 300
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 17/191 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R ++AF+++ ++K+ L + SD +V A Y A+ + KGR + AS LY AC
Sbjct: 115 DRNFKQAFNELYRLKDKLTL--SDSVVEKAAYIYRKAINKKLVKGRTISALMASALYAAC 172
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFT 183
R+ P L D S+ NI +L A Y L L + + + + ++ I + + T
Sbjct: 173 REVGTPRTLKDISDTTNIKKRDLAANYRLLVNELDLKIPVVNSVHNVARIASKIGISEKT 232
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
R+ A +IL + I+ G+ P L ALY+S G +S+ D+ +
Sbjct: 233 KRI-----------ATEILRKAEESEISAGKNPMSLAATALYISCRKTGENYSQRDLAEA 281
Query: 244 VHICEATLMKR 254
+ E T+ R
Sbjct: 282 ASVTEVTIRNR 292
>gi|48478410|ref|YP_024116.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431058|gb|AAT43923.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 310
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 122/249 (48%), Gaps = 19/249 (7%)
Query: 30 LEDHNFSTEATFV-KNAAGQSQLSGNF-----VRTIQSEYGASR--ERLMEKAFDDMRQM 81
+ D ST+ ++ K++ G+S + N +R Q S ER + +A ++ +M
Sbjct: 73 IHDKGLSTDISWKNKDSYGKSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELERM 132
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ L+I +++ A Y AV +N +GR E V A +Y ACR + P L + ++
Sbjct: 133 TSNLSI--PNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEIAS 190
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+ E+G Y + + L + N++ P ++++F +L + A +I
Sbjct: 191 VTRVKKKEIGRTYRIMARYLKL----NIMPS-KPEDYVNRFCSKLRLSMEAR--KRAEEI 243
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261
L + +T+G+ P+G+ AA+Y+++L G + ++ I ++ + E T+ R E T
Sbjct: 244 LKMAVDNDLTSGKGPTGVAAAAIYIASLITGERRTQRAIAEVAGVTEVTIRNRYKEL--T 301
Query: 262 DSGSLTIED 270
+ +LTIE+
Sbjct: 302 EKLNLTIEE 310
>gi|390961643|ref|YP_006425477.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390519951|gb|AFL95683.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 298
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 17/238 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNF------VRTIQSEY--GASRERLMEKAFDDMRQ 80
++ D ST+ + +Q++G + +R Q + ER + A ++ +
Sbjct: 60 MIHDKGLSTDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDR 119
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M + + + VA Y AV + +GR E + ++ LY ACR + P L + +
Sbjct: 120 MAAQMRL--PRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIA 177
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
+ E+G Y L + L + L+ P ++ +F D L K A++
Sbjct: 178 AVSKVTKKEIGRSYRFLARGLNLN-----LRPTSPIEYVDRFGDALNVSARTK--KRAKE 230
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
IL + IT+G+ P+GL AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 231 ILREAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 288
>gi|341582974|ref|YP_004763466.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810632|gb|AEK73789.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 303
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 17/238 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNF------VRTIQSEY--GASRERLMEKAFDDMRQ 80
++ D ST+ + +Q++G + +R Q + ER + A ++ +
Sbjct: 65 MIHDKGLSTDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDR 124
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M + + + VA Y AV + +GR E + ++ LY ACR + P L + +
Sbjct: 125 MAAQMRL--PRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIA 182
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
+ E+G Y L + L + L+ P ++ +F D L K A++
Sbjct: 183 AVSKVTKKEIGRSYRFLARGLNLN-----LRPTSPIEYVDRFGDALNVSARTK--KRAKE 235
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
IL + IT+G+ P+GL AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 236 ILHEAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 293
>gi|212224386|ref|YP_002307622.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009343|gb|ACJ16725.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 303
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 93 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 152
+ VA Y AV + +GR E + ++ LY ACR + P L + + + E+G
Sbjct: 135 VKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSKVTKKEIGR 194
Query: 153 VYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITT 212
Y L + L + L+ P ++ +F D L +++ A++IL + IT+
Sbjct: 195 SYRFLARGLGLN-----LRPTSPIEYIDRFGDSL--DVSQRTKKRAKEILQEAIKRGITS 247
Query: 213 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ P+GL AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 248 GKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 293
>gi|16081986|ref|NP_394398.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195243|sp|Q9HJM7.1|TF2B1_THEAC RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|10640255|emb|CAC12069.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 312
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 17/205 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + +A ++ +M + L+I D++ A Y AV +N +GR E V A LY AC
Sbjct: 121 ERNLSQALQELERMASNLSI--PDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAAC 178
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTD 184
R + P L + ++ + E+G Y + + L + N++ PS ++ +F
Sbjct: 179 RITNVPRTLGEIASVTRVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCS 230
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
+L + + + A +IL S + +T+G+ P+G+ AA+Y+++L G + ++ + ++
Sbjct: 231 KLKLSMDTR--NKALEILRSAENAGLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVA 288
Query: 245 HICEATLMKRLIEFENTDSGSLTIE 269
+ E T+ R E T+ L +E
Sbjct: 289 GVTEVTIRNRYKEL--TEKLQLNVE 311
>gi|170291077|ref|YP_001737893.1| transcription factor TFIIB cyclin-related protein [Candidatus
Korarchaeum cryptofilum OPF8]
gi|170175157|gb|ACB08210.1| Transcription factor TFIIB cyclin-related [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 356
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 117/288 (40%), Gaps = 41/288 (14%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDH--NFSTEA-------------------- 39
+ C C P L C CG +L+ +FS +
Sbjct: 41 IRCPRCGSKNVVEDPNTGDLVCQNCGLILDSSALDFSKDWRAFDSDEYIERAHAGAPITP 100
Query: 40 --------TFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESD 91
T + G S+ S N ++ Q S+E+ +E A +R ++L + +
Sbjct: 101 LRPGFGLDTDIVLTKGASKKSVNLLKRAQKHAADSKEKTIEPALRKIRDAADSLVLPQ-- 158
Query: 92 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 151
E + A Y +A KGR + + A+ +Y ACR+ P L + S + + E+G
Sbjct: 159 ETIEDAATLYRMAARAGLVKGRSMDAMVAAVIYAACRRTDVPKTLEEISKFFALEEKEIG 218
Query: 152 AVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWI 210
+ L + L I + P F++ +L LP ++V A I+ KR+
Sbjct: 219 RSFRFLFRKLGIQ-----IPPPKPENFVYLIASKLSLP---EEVATQAIRIIKIAKRNGA 270
Query: 211 TTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
T GR+P G+ AA+Y++ GL ++ ++ + ++ E T+ R E
Sbjct: 271 TMGREPVGVAAAAVYMACQELGLHRTQRELAQAANVTEVTVRNRYKEL 318
>gi|257076875|ref|ZP_05571236.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 311
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 103/203 (50%), Gaps = 11/203 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + +A ++ +M + L+I +++ + Y AV +N +GR E V A +Y AC
Sbjct: 120 ERNLSQALQELERMASNLSI--PNDVRETSAVIYRKAVKQNMIRGRSIEGVVAGSIYAAC 177
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + ++ + E+G Y + + L + N+L P ++++F +L
Sbjct: 178 RITNVPRTLDEIASVTRVKKKEIGRTYRIMARYLKL----NILPS-KPDDYVNRFCSKLR 232
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+ A +IL + +T+G+ P+G+ AA+Y+++L G + ++ I ++ +
Sbjct: 233 LSMEAR--KRAEEILKMAIDNDLTSGKGPTGVAAAAIYIASLITGERRTQRAIAEVAGVT 290
Query: 248 EATLMKRLIEFENTDSGSLTIED 270
E T+ R E T+ +LTIE+
Sbjct: 291 EVTIRNRYKEL--TEKLNLTIEE 311
>gi|68164349|gb|AAY87166.1| hypothetical transcription initiation factor IIB-like protein
variant #2 [Sulfolobus islandicus]
Length = 187
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 73 KAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+A +++ ++ N LN+ +S DE A Y AV + +GR E V A+ +Y ACR+
Sbjct: 2 QAMNELERIGNLLNLPKSVKDE----AALIYRKAVEKGLVRGRSIESVVAAAIYAACRRM 57
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 190
L + + Y N E+ Y L + L ++ + DP ++ + + L G
Sbjct: 58 KLARTLDEIAQYTKANRKEVAXCYRLLLRELDVSVPVS-----DPKDYVTRIAN--LLGL 110
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 250
+ V TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T
Sbjct: 111 SGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVT 170
Query: 251 LMKRLIEF 258
+ R E
Sbjct: 171 VRNRYKEL 178
>gi|325969253|ref|YP_004245445.1| transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
gi|323708456|gb|ADY01943.1| Transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
Length = 336
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 100/203 (49%), Gaps = 19/203 (9%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTE 116
+Q+ Y ER + +A +++ ++ + L I ++ DE + V Y + + +GR E
Sbjct: 139 VQTSY----ERNIIQAMNELSRISSQLGIPKACVDEAMGV----YEQVLTKGLVRGRSVE 190
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDP 175
+ A+CL++ACR+ P L + S Y + E+ + IA E V L DP
Sbjct: 191 AIVAACLHMACRKIGMPRSLDEISQYTRASRKEVARCFR------LIARELGVRLPLSDP 244
Query: 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
+++ + ++L G ++ A +IL KR +T G+ P+GL AA+Y+++L G
Sbjct: 245 KLYVPRIVEQLKLSG--EILKEALNILEQAKRKGLTAGKDPAGLAAAAVYIASLLRGEVR 302
Query: 236 SKSDIVKIVHICEATLMKRLIEF 258
++ ++ + E T+ R E
Sbjct: 303 TQKEVAMAAQVTEVTVRNRYKEL 325
>gi|335434083|ref|ZP_08558890.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334898148|gb|EGM36265.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 334
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 114/249 (45%), Gaps = 25/249 (10%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQS-----QLSGNFVRTIQSEYGA--SRERLMEKAFDDMR 79
K+L D ST + K+A+G++ + + +R + A SR+R +++A ++
Sbjct: 87 KLLHDEGLSTSIGWSDKDASGRTLSPSQREKMSRLRVWDERFRATDSRDRNLKQALGEID 146
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + E+ + A Y A+ + GR E + + LY A RQ P L +F
Sbjct: 147 RMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEF 204
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD--- 196
+ + Y L + L + + DP+ +L +F L ++ D
Sbjct: 205 EPISRVRRQKYARAYRYLARQLELG-----IAPADPAEYLPRFVSEL------ELSDDLE 253
Query: 197 -TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 255
AR++L+++K+ +G+ P+GL A+Y + L G + ++ ++ + + E T+ R
Sbjct: 254 RKARELLSAVKKTGQHSGKNPTGLAAGAIYAAGLLTGDRITQQEVAETADVSEVTIRDRY 313
Query: 256 IEFENTDSG 264
E T G
Sbjct: 314 SELLETLEG 322
>gi|307595018|ref|YP_003901335.1| Zinc finger TFIIB-type domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550219|gb|ADN50284.1| Zinc finger TFIIB-type domain protein [Vulcanisaeta distributa DSM
14429]
Length = 336
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 15/201 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER + +A +++ ++ + L I ++ V A Y + + +GR E +
Sbjct: 139 VQTSY----ERNIIQAMNELSRISSQLGIPKA--CVDEAMGIYEQVLTKGLVRGRSVEAI 192
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSI 177
A+CL++ACR+ P L + S Y + E+ + IA E V L DP +
Sbjct: 193 VAACLHMACRKIGMPRSLDEISQYTRASRKEVARCFR------LIARELGVRLPLSDPKL 246
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G ++ A +IL KR +T G+ P+GL AA+Y+++L G ++
Sbjct: 247 YVPRIVEQLKLSG--EILKEALNILEQAKRKGLTAGKDPAGLAAAAVYIASLLKGEVRTQ 304
Query: 238 SDIVKIVHICEATLMKRLIEF 258
++ + E T+ R E
Sbjct: 305 KEVAMAAQVTEVTVRNRYKEL 325
>gi|253743265|gb|EES99717.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia intestinalis
ATCC 50581]
Length = 477
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 145/312 (46%), Gaps = 34/312 (10%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
+ C C + T +++ C CG V+ D + + ++ G S + GNF+ S
Sbjct: 3 ISCPFCFSNSTITDEGQAKVFCGNCGLVIMDTLIVNDLIY-QDQNGVSTVMGNFISANTS 61
Query: 62 EYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQAS 121
A+R ++ ++ + LN+ E+V A +Y + T+GRR + A+
Sbjct: 62 --SAARSLAIKHFSKELETIAMVLNLPM--ELVRKASDYYANCLRDKATRGRRNNLLAAA 117
Query: 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ--LCQV---LYIADESNVLKQVDPS 176
LY+ RQ + LLID+++ LN++V+ L Y+Q L Q L D ++L + S
Sbjct: 118 LLYIVGRQHNLSHLLIDYADALNVSVFTLNK-YIQPFLRQYNIKLPYQDLESLLPRFVDS 176
Query: 177 IFLHKFTDRL------LPGGNKKVCDT----------ARDILASMKRDWITTGRKPSGLC 220
I +FT + N + T ++ IL + I TGR PSGL
Sbjct: 177 ILKEEFTTVFQDNRDCMLFANIHIASTDQLREHTLAVSKYILKASIAINIHTGRLPSGLL 236
Query: 221 GAALYVS--ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGS-LTIEDFMARKKE 277
GA+++V+ L +G+ + + + V T+ +RL E ++++ + +TI D + R E
Sbjct: 237 GASIFVALKLLNYGIPIHR--VARCVFCSPDTIARRLQEMQSSELFTKITIGDVL-RNVE 293
Query: 278 LH-EGVAANLPN 288
L+ EGV P+
Sbjct: 294 LNIEGVDIRPPS 305
>gi|16120252|ref|NP_395840.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169237618|ref|YP_001690821.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195241|sp|Q9HHK5.1|TF2B3_HALSA RecName: Full=Transcription initiation factor IIB 3; Short=TFIIB 3
gi|10584386|gb|AAG20975.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167728395|emb|CAP15204.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 317
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V +CLY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATACLYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + I+ E+G Y + Q L + ++ DP +L +F L
Sbjct: 186 RQEGIPRTLEEVTEVARIDQKEIGRTYRYVAQELSLE-----IQPTDPKEYLPRFASDLE 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V AR+I+ + + +G+ PSG AA+Y ++L K ++ ++ + ++
Sbjct: 241 L--SEEVIAKAREIIDTSAEQGLLSGKSPSGFAAAAIYAASLLCNEKKTQREVANVANVT 298
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 299 EVTIRNRYQE 308
>gi|68164351|gb|AAY87167.1| hypothetical transcription initiation factor IIB-like protein
variant #3 [Sulfolobus islandicus]
gi|68164353|gb|AAY87168.1| hypothetical transcription initiation factor IIB-like protein
variant #1 [Sulfolobus islandicus]
Length = 187
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 73 KAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+A +++ ++ N LN+ +S DE A Y AV + +GR E V A+ +Y ACR+
Sbjct: 2 QAMNELERIGNLLNLPKSVKDE----AALIYRKAVEKGLVRGRSIESVVAAAIYAACRRM 57
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 190
L + + Y N E+ Y L + L ++ + DP ++ + + L G
Sbjct: 58 KLARTLDEIAQYTKANRKEVARCYRLLLRELDVSVPVS-----DPKDYVTRIAN--LLGL 110
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 250
+ V TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T
Sbjct: 111 SGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVT 170
Query: 251 LMKRLIEF 258
+ R E
Sbjct: 171 VRNRYKEL 178
>gi|300713081|ref|YP_003738893.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|299126765|gb|ADJ17102.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 345
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER +++AF ++R+M +AL G D I A Y AV + GR E + + LY A
Sbjct: 153 ERNLKQAFGEIRRMASAL--GLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAA 210
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + + + Y L + L + ++ VDP ++ +F L
Sbjct: 211 RQHSTPRTLAELETVSRVKRLRIQRAYRYLSRELGLR-----MEPVDPLQYVPQFASEL- 264
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+ + ARD+L + K + +GR P+GL A+Y + + ++ + + H+
Sbjct: 265 -NVSDEATRRARDLLTTAKAQGVHSGRSPAGLAAGAIYAATRLTNEQVTQETVRAVTHVS 323
Query: 248 EATLMKRLIEF 258
T+ R E
Sbjct: 324 RMTIRIRYQEL 334
>gi|448294148|ref|ZP_21484234.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|445587483|gb|ELY41742.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 298
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER +++AF ++R+M +AL G D I A Y AV + GR E + + LY A
Sbjct: 106 ERNLKQAFGEIRRMASAL--GLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAA 163
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + + + Y L + L + ++ VDP ++ +F L
Sbjct: 164 RQHSTPRTLAELETVSRVKRLRIQRAYRYLSRELGLR-----MEPVDPLQYVPQFASEL- 217
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+ + ARD+L + K + +GR P+GL A+Y + + ++ + + H+
Sbjct: 218 -NVSDEATRRARDLLTTAKAQGVHSGRSPAGLAAGAIYAATRLTNEQVTQETVRAVTHVS 276
Query: 248 EATLMKRLIEF 258
T+ R E
Sbjct: 277 RMTIRIRYQEL 287
>gi|414587926|tpg|DAA38497.1| TPA: hypothetical protein ZEAMMB73_605143 [Zea mays]
Length = 316
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 68/119 (57%), Gaps = 24/119 (20%)
Query: 423 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 482
EVDGY HNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 67 EVDGYFHNEEETQYKKIIWEEMNKEYLEEQAAKEALA----------------------- 103
Query: 483 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
A AA + +K++KR + K+S PA+T EAT ML +K L SKIN +++L+
Sbjct: 104 -AELAARGIDPEAGKKKRKRNEDMKSSTPAETPAEATCNMLKRKGLGSKINVGAVDELY 161
>gi|414884212|tpg|DAA60226.1| TPA: hypothetical protein ZEAMMB73_105752 [Zea mays]
Length = 319
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 68/119 (57%), Gaps = 24/119 (20%)
Query: 423 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 482
EVDGY HNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 67 EVDGYFHNEEETQYKKIIWEEMNKEYLEEQAAKEALA----------------------- 103
Query: 483 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 541
A AA + +K++KR + K+S PA+T EAT ML +K L SKIN +++L+
Sbjct: 104 -AELAARGIDPEAGKKKRKRNEDMKSSTPAETPAEATCNMLKRKGLGSKINVGAVDELY 161
>gi|336254888|ref|YP_004597995.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338877|gb|AEH38116.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 323
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL I S + VA Y A++ + +GR E V CLY AC
Sbjct: 135 ERNLQSALSEIDRMSSALGIPRS--VREVASVVYRRALSEDLIRGRSIEGVATGCLYAAC 192
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP ++ +F L
Sbjct: 193 RQEGIPRSLEEVAEVSRVERKEIGRTYRYVAQELSLE-----LKPVDPQEYVPRFCSEL- 246
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V R+I+ + +G+ P+G AA+Y ++L K ++ ++ ++ +
Sbjct: 247 -DLSEEVTAKTREIIQVTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVT 305
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 306 EVTIRNRYQE 315
>gi|354611426|ref|ZP_09029382.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196246|gb|EHB61748.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 330
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 19/239 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS--------EYGASRERLMEKAFDDMRQ 80
++ D ST + A + LSG R +Q S+ER +++A ++ +
Sbjct: 91 MMHDKGLSTNIGWQNKDAYGNSLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGEIER 150
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL G D + A Y A+ + GR E V S LY A RQ + P L + +
Sbjct: 151 MSSAL--GLPDNVRETASVIYRRALNEDLLPGRSIEGVATSALYAAARQANTPRSLDEVA 208
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTAR 199
N + E+ Y + + L + + DP+ ++ +F L LP +V AR
Sbjct: 209 NVSRVERDEIARTYRYVVRELGLE-----VAPTDPASYVPRFCSELDLP---DEVERRAR 260
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
++L + + IT+G+ P GL AA+Y ++L + ++S++ + +I E T+ R E
Sbjct: 261 ELLTAAEDAGITSGKSPVGLAAAAVYAASLLTNERITQSEVSDVANISEVTIRNRYHEI 319
>gi|159111980|ref|XP_001706220.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia ATCC
50803]
gi|29293103|gb|AAO72320.1| transcription factor IIB-related protein [Giardia intestinalis]
gi|157434314|gb|EDO78546.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia ATCC
50803]
Length = 476
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 139/312 (44%), Gaps = 34/312 (10%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
+ C C + T +++ C CG V+ D + + ++ G S + GNF I +
Sbjct: 3 ISCPFCLSNSTITDEGQAKVFCGNCGLVIMDTLIVNDLIY-QDQNGVSTVMGNF---ISA 58
Query: 62 EYGASRERLMEKAFD-DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
++ L K F ++ + LN+ E+V A +Y + T+GRR + A
Sbjct: 59 NTSSTARSLAIKHFSKELETIAMILNLPM--ELVRKASDYYANCLRDKATRGRRNNLLAA 116
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ--LCQV---LYIADESNVLKQVDP 175
+ LY+ RQ + LLID+++ LN++V+ L Y+Q L Q L D ++L +
Sbjct: 117 ALLYIVGRQHNLSHLLIDYADALNVSVFTLNK-YIQPFLRQYNIKLPYQDLESLLPRFVD 175
Query: 176 SIFLHKFTD--------RLLPGGNKKVCDTARD--------ILASMKRDWITTGRKPSGL 219
SI +FT L + D R+ IL + I TGR PSGL
Sbjct: 176 SILKEEFTTAFQDNRDCMLFANIHITSVDQLREHTLVVSKYILKASTAINIHTGRLPSGL 235
Query: 220 CGAALYVS--ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDS-GSLTIEDFMARKK 276
GA+++V+ L +G+ + I + V T+ +RL E ++++ LTI D +
Sbjct: 236 LGASIFVALKLLNYGIPIHR--ISRCVFCSPDTIARRLQEMQSSELFAKLTIGDVLRNVD 293
Query: 277 ELHEGVAANLPN 288
EGV P+
Sbjct: 294 LDLEGVDVRPPS 305
>gi|20094294|ref|NP_614141.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|24212486|sp|Q8TX21.1|TF2B_METKA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19887337|gb|AAM02071.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 307
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 105/220 (47%), Gaps = 12/220 (5%)
Query: 42 VKNAAGQSQLSGNFVRTIQS--EYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
++++ G+ +RT + + SRER +AF ++ + + L + ES + +A
Sbjct: 87 LRDSGGKKNPRMRRIRTWDARIKVSGSRERNFFQAFLELENLASKLQLPES--VRELAAS 144
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NVYELGAVYLQLC 158
Y A +GR E V + ++ AC++ P + + L + + E+ Y L
Sbjct: 145 IYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIAEALGVSDENEILRAYRVLQ 204
Query: 159 QVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+ L + K +PS L +F +L G ++ V A++I+ K IT G+ P+G
Sbjct: 205 RRLNLKQ-----KPTEPSDHLPRFASKL--GVSENVQAKAQEIIEKAKEKGITVGKGPAG 257
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ AALY++++ G + ++ +I ++ + E T+ R E
Sbjct: 258 VAAAALYIASILEGERRTQKEIAEVARVTEVTIRNRYKEI 297
>gi|389860462|ref|YP_006362701.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
gi|388525365|gb|AFK50563.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
Length = 316
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 115/236 (48%), Gaps = 16/236 (6%)
Query: 30 LEDHNFSTEATFV-KNAAG------QSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMK 82
+ D F+T + K+A+G ++QL ++ +S +R + +A +++ ++
Sbjct: 78 VHDMGFATSIDYADKDASGRRIIEKKAQLQKLRKWQARTRIQSSVDRNLAQALNELERIA 137
Query: 83 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
LN+ + A R Y +AV + +GR E V A+ +Y+ACR+ P L + + Y
Sbjct: 138 ELLNL--PTHVREEAARIYRMAVEKGLVRGRSIESVIAAAVYVACREARVPRSLDEITKY 195
Query: 143 LNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDIL 202
I E+ Y L + L I + VDP F+ + L G + ++ A +IL
Sbjct: 196 TRIPRKEIARCYRLLLRELGIK-----VTAVDPIDFIPRIAHAL--GLSGEIIKNATEIL 248
Query: 203 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
++ +T G+ P+GL AA+Y++A+T G K ++ ++ + + E T+ R E
Sbjct: 249 NKVRNKGVTAGKDPAGLAAAAVYIAAITAGEKRTQKEVAHVAGVTEVTVRNRYKEI 304
>gi|440798130|gb|ELR19198.1| transcription factor tfiib repeat domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 372
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 17 YDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA-------SRER 69
Y++ L C CG VLE+ N E TF ++A G S G FV S + SRE
Sbjct: 17 YENSLICLACGWVLEESNIVVEQTFSESAGGSSVADGQFVSATGSSFRGMRGVNRESREI 76
Query: 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 129
+E A + M +L G + A R + +A+ NF +GR++E V +SCLY+ CR+
Sbjct: 77 TLENAKRRISSMAGSL--GLTAHHTESAFRLFLLALQHNFVRGRKSEYVISSCLYVVCRR 134
Query: 130 K 130
+
Sbjct: 135 E 135
>gi|399578260|ref|ZP_10772009.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236752|gb|EJN57687.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 389
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 11/191 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A +M +M +AL + +S VA Y A+ + +GR E V CLY AC
Sbjct: 201 ERNLQFALSEMDRMASALGVPKSTR--EVASVIYRRALNEDLIRGRSIEGVATGCLYAAC 258
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ+ P L + ++ + E+G Y Y+A E ++ ++ VDP ++ +F L
Sbjct: 259 RQEGIPRSLDEVADVSRVPYQEIGRTY------RYVAKELSLEMRPVDPKEYVPRFASEL 312
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G ++V A D++ + + + +G+ P+G AALY + L K ++ ++ + +
Sbjct: 313 --GVPEEVEQKANDVIDTAAEEGLLSGKSPTGFAAAALYAAGLLCNEKRTQKEVADVAQV 370
Query: 247 CEATLMKRLIE 257
E T+ R E
Sbjct: 371 TEVTIRNRYQE 381
>gi|355693620|gb|EHH28223.1| hypothetical protein EGK_18611 [Macaca mulatta]
gi|355778900|gb|EHH63936.1| hypothetical protein EGM_17014 [Macaca fascicularis]
Length = 59
Score = 70.5 bits (171), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KR
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKR 59
>gi|333986561|ref|YP_004519168.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
gi|333824705|gb|AEG17367.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
Length = 340
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 161 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 220
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+ E+G Y L + L I L P ++ +F L G + +V A DI
Sbjct: 221 VSRVTKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIDI 273
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 260
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 274 IEQAMAKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 333
Query: 261 TDSG 264
D G
Sbjct: 334 LDMG 337
>gi|322370876|ref|ZP_08045431.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320549553|gb|EFW91212.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 319
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+A + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALAEDLIRGRSIEGVATSTLYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + ++ E+G Y + Q L + +K VDP ++ +F L
Sbjct: 189 RQEGIPRSLEEVAEVSRVDQKEIGRTYRYISQELGLE-----MKPVDPKQYVPRFCSDL- 242
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 243 -GVSEEVQSKANEIIDTTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|448733008|ref|ZP_21715254.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445803341|gb|EMA53638.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 325
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 136 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALSDDLIRGRSIEGVATSALYAAC 193
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S +N E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 194 RKEGIPRSLEEISEVSRVNRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELT 248
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A DI+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 249 L--SEEVQSKANDIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 306
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 307 EVTIRNRYQE 316
>gi|448728119|ref|ZP_21710451.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445797553|gb|EMA48024.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 136 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALSDDLIRGRSIEGVATSALYAAC 193
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S +N E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 194 RKEGIPRSLEEISEVSRVNRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELT 248
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A DI+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 249 L--SEEVQSKANDIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 306
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 307 EVTIRNRYQE 316
>gi|159041370|ref|YP_001540622.1| transcription initiation factor IIB [Caldivirga maquilingensis
IC-167]
gi|189029851|sp|A8MCX6.1|TF2B_CALMQ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|157920205|gb|ABW01632.1| Transcription factor TFIIB cyclin-related [Caldivirga
maquilingensis IC-167]
Length = 336
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 19/203 (9%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTE 116
+Q+ Y ER + +A ++ ++ + L + +S DE + V Y + KGR E
Sbjct: 139 VQTSY----ERNLVQATHELNRIAHQLGVPKSCMDEALAV----YKQVLKSGLVKGRSVE 190
Query: 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPS 176
+ A+CL++ACR + P L + S Y E+ + + + L I L DP
Sbjct: 191 AIIAACLHMACRMQGMPRSLDEISQYTRAPRKEIARCFRLIARELRIR-----LPLSDPR 245
Query: 177 IFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
++ K ++L LPG + A +L K +T G+ P+GL AA+Y+++L G
Sbjct: 246 QYVPKIVEQLKLPGD---IAKEAIRVLEEAKDKGLTAGKDPAGLAAAAVYIASLLKGEVR 302
Query: 236 SKSDIVKIVHICEATLMKRLIEF 258
++ +I + + E T+ R E
Sbjct: 303 TQKEIAQAAQVTEVTVRNRYKEL 325
>gi|13541914|ref|NP_111602.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363020|sp|Q979Q3.1|TF2B1_THEVO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|14325345|dbj|BAB60249.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 312
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 101/205 (49%), Gaps = 17/205 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + +A ++ +M A N+ +++ A Y AV +N +GR E V A LY AC
Sbjct: 121 ERNLSQALQELERM--AFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAAC 178
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTD 184
R + P L + ++ + E+G Y + + L + N++ PS ++ +F
Sbjct: 179 RITNVPRTLGEIASVTRVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCS 230
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
+L + + + A +IL + +T+G+ P+G+ AA+Y+++L G + ++ + ++
Sbjct: 231 KLKLSMDTR--NKALEILRDAENVGLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVA 288
Query: 245 HICEATLMKRLIEFENTDSGSLTIE 269
+ E T+ R E T+ L +E
Sbjct: 289 GVTEVTIRNRYKEL--TEKLKLNVE 311
>gi|409730080|ref|ZP_11271675.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448723223|ref|ZP_21705747.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445787965|gb|EMA38691.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 321
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y ++A + +GR E V S LY AC
Sbjct: 132 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRSLAEDLIRGRSIEGVATSALYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S +N E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RKEGIPRSLEEISEVSRVNRKEIGRTYRYVSQELALE-----MRPVDPKKYVPRFCSELT 244
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A DI+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 245 L--SEEVQSKANDIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 302
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 303 EVTIRNRYQE 312
>gi|399577766|ref|ZP_10771518.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399237208|gb|EJN58140.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 338
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A +M +M +AL G D + VA Y A+ + +GR E V S LY AC
Sbjct: 151 ERNLQFALSEMDRMASAL--GVPDSVREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 208
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 209 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASEL- 262
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+K+V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 263 -ELSKEVQSKANEIIDVSAEKGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVASVAQVT 321
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 322 EVTIRNRYQE 331
>gi|118431874|ref|NP_148613.2| transcription initiation factor IIB [Aeropyrum pernix K1]
gi|152031706|sp|Q9Y942.2|TF2B_AERPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|116063196|dbj|BAA81458.2| transcription initiation factor IIB [Aeropyrum pernix K1]
Length = 322
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 2/175 (1%)
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
A +G + +V A + Y A+ + T+GR E + A+ LY A R P L D +
Sbjct: 131 ASRMGMPEIVVEDASKIYREAMEKGLTRGRSIESIVAASLYAASRIHGLPHSLTDIIKAM 190
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
NV + L + D + + P F++ L G + V A I+
Sbjct: 191 KGNVDAETRRDVARSYRLLVRDLNIKIPVRKPENFVYTIISAL--GLPEHVAIEAIKIID 248
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
++ +T G+ P GL GAA+Y++AL HG++ ++ +I +V + E T+ R E
Sbjct: 249 LSRKKGLTAGKDPGGLAGAAVYLAALKHGIRKTQKEIAHVVGVTEVTIRNRYKEI 303
>gi|340345049|ref|ZP_08668181.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520190|gb|EGP93913.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 303
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 95/195 (48%), Gaps = 9/195 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S +R + +A ++M ++K+ L + +D +V A Y A+ + +GR + +
Sbjct: 108 RSQAHSSADRNLRQALNEMGKLKDKLAL--TDAVVEKAAYIYRKAMEKKLVRGRSIQGLV 165
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY ACR P L D +N +NI ++ Y + + L + + VDP +
Sbjct: 166 AACLYAACRNTETPRTLDDVANGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 220
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + ++K A +IL K + G+ P G+ AALY++ ++ G S+ D
Sbjct: 221 SRIAS--IAELSEKSKRKAVEILEQAKEIGMVAGKDPMGIAAAALYLACISTGEVKSQKD 278
Query: 240 IVKIVHICEATLMKR 254
I + E T+ R
Sbjct: 279 ISIASGVTEVTIRNR 293
>gi|292654896|ref|YP_003534793.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|291372806|gb|ADE05033.1| transcription initiation factor TFB [Haloferax volcanii DS2]
Length = 326
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 95/190 (50%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 137 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVATSALYAAC 194
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 195 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 248
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+K+V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ +
Sbjct: 249 -DLSKEVQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVT 307
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 308 EVTIRNRYQE 317
>gi|308162410|gb|EFO64809.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia P15]
Length = 476
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 138/312 (44%), Gaps = 34/312 (10%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS 61
+ C C T +++ C CG V+ D + + ++ G S + GNF I +
Sbjct: 3 ISCPFCLSSSTITDEGQAKVFCGNCGLVIMDTLIVNDLIY-QDQNGVSTVMGNF---ISA 58
Query: 62 EYGASRERLMEKAFD-DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQA 120
++ L K F ++ + LN+ E+V A +Y + T+GRR + A
Sbjct: 59 NTSSTARSLAIKHFSKELETIAMILNLPM--ELVRKASDYYANCLRDKVTRGRRNNLLAA 116
Query: 121 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ--LCQV---LYIADESNVLKQVDP 175
+ LY+ RQ + LLID+++ LN++V+ L Y+Q L Q L D ++L +
Sbjct: 117 ALLYIVGRQHNLSHLLIDYADALNVSVFTLNK-YIQPFLRQYNIKLPYQDLESLLPRFVD 175
Query: 176 SIFLHKFTD--------RLLPGGNKKVCDTARD--------ILASMKRDWITTGRKPSGL 219
SI +FT L + D R+ IL + I TGR PSGL
Sbjct: 176 SILKEEFTATFQDNRDCMLFANIHITSVDQLREHTLVVSKYILKASTAINIHTGRLPSGL 235
Query: 220 CGAALYVS--ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDS-GSLTIEDFMARKK 276
GA+++V+ L +G+ + + + V T+ +RL E ++++ LTI D +
Sbjct: 236 LGASIFVALKLLNYGIPIHR--VSRCVFCSPDTVARRLQEMQSSELFAKLTIGDVLRNVD 293
Query: 277 ELHEGVAANLPN 288
+ E + P+
Sbjct: 294 LVLENIDVRPPS 305
>gi|193788404|dbj|BAG53298.1| unnamed protein product [Homo sapiens]
Length = 439
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 134/340 (39%), Gaps = 63/340 (18%)
Query: 231 HGLKFSKSDIVKIVHICEATLMKRLIEF-------------------ENTDSGSLTIEDF 271
H + + +++ +V +CE+TL KRL EF E D S T
Sbjct: 2 HDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQR 61
Query: 272 MARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGL 329
R K+L + ++ L ++S + + + +P A G S ++ T + L
Sbjct: 62 KLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSL 121
Query: 330 EGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTT--- 386
G + E E + A++ N RE + SPE P +
Sbjct: 122 CG------EEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD 175
Query: 387 --QTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKII 440
TA++ G D + + D + DG + S IDD E+D Y+ NE E K +
Sbjct: 176 PLPTAASLGISDSIRECISSQSSDPKDASGDGGLDLSGIDDLEIDRYILNESEARVKAEL 235
Query: 441 WEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQ 500
W N EYL EQ KEA A K EL KE +
Sbjct: 236 WMRENAEYLREQREKEARIAKEK------------------ELGIY---------KEHKP 268
Query: 501 KRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 269 KKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 308
>gi|329766221|ref|ZP_08257779.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393795806|ref|ZP_10379170.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137280|gb|EGG41558.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 304
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 25/238 (10%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQ 80
+ D +T + A LS + TI+ S+ +R +AF ++ +
Sbjct: 70 TMHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELNR 129
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+K+ L I SD ++ A Y A+ + +GR + AS LY ACR P L D
Sbjct: 130 LKDKLAI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDVE 187
Query: 141 NYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 196
NI ++ Y L + L + D + ++ I + + T R
Sbjct: 188 QAANIKRKDIARCYRLLIKELDLKMPVTDSIQCVARIASRIGIAEKTKRY---------- 237
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
A ++L + + ++ G+ P GL AALY+S + +G ++ DI + ++ E T+ R
Sbjct: 238 -AVNVLKQAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRNR 294
>gi|307344666|ref|NP_001182550.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus (Silurana) tropicalis]
Length = 665
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 64/134 (47%), Gaps = 31/134 (23%)
Query: 409 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 468
A DG + + IDD E+D Y+ NE+E KK +W + N +YL EQ KEA A K
Sbjct: 436 AGDGELDLNGIDDNEIDRYILNEKEAEIKKEMWMKENEDYLREQKEKEARIAKEK----- 490
Query: 469 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ--TALEATRRMLTKK 526
EL K+QK +K P Q TA EA +ML +K
Sbjct: 491 -------------ELGIY-----------KEQKPRKPSKRRAPIQASTAGEAIEKMLEQK 526
Query: 527 RLSSKINYDVLEKL 540
++SSKINYDVL L
Sbjct: 527 KISSKINYDVLRDL 540
>gi|344211069|ref|YP_004795389.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448667562|ref|ZP_21686062.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343782424|gb|AEM56401.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445770130|gb|EMA21198.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 319
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V +CLY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATACLYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + S+ + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RQEGIPRSLEEVSDVSRVEQKEIGRTYRYVAQELELK-----MEPVDPKQYVPRFASELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 L--SEEVQSKANEIIDTTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|338753412|ref|NP_001229718.1| transcription factor IIIB 90 kDa subunit isoform 7 [Homo sapiens]
Length = 439
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 134/340 (39%), Gaps = 63/340 (18%)
Query: 231 HGLKFSKSDIVKIVHICEATLMKRLIEF-------------------ENTDSGSLTIEDF 271
H + + +++ +V +CE+TL KRL EF E D S T
Sbjct: 2 HDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQR 61
Query: 272 MARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGL 329
R K+L + ++ L ++S + + + +P A G S ++ T + L
Sbjct: 62 KLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSL 121
Query: 330 EGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPERVPKNCTT--- 386
G + E E + A++ N RE + SPE P +
Sbjct: 122 CG------EEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD 175
Query: 387 --QTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKII 440
TA++ G D + + D + DG + S IDD E+D Y+ NE E K +
Sbjct: 176 PLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAEL 235
Query: 441 WEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQ 500
W N EYL EQ KEA A K EL KE +
Sbjct: 236 WMRENAEYLREQREKEARIAKEK------------------ELGIY---------KEHKP 268
Query: 501 KRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 269 KKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 308
>gi|340345821|ref|ZP_08668953.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520962|gb|EGP94685.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 303
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 102/233 (43%), Gaps = 17/233 (7%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
+ D +T V A LS + TI+ S+ +R +AF ++ ++
Sbjct: 70 MHDMGLATIINPVNKDATGKPLSASMKSTIERLRTWDNRSQVHEPADRNFRQAFSELDRL 129
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
K L + SD ++ Y A+ + +GR + A+ LY ACR P L D SN
Sbjct: 130 KTKLAL--SDAVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLTDVSN 187
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+NI ++ Y L + L + + V+P + + + + G ++K A +I
Sbjct: 188 GINIKRKDIARCYRLLLRELDLK-----MPVVNPIKCVSRISS--IAGLSEKTKRKAVEI 240
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
L + ++ G+ P GL AALY+S + +G ++ DI + E T+ R
Sbjct: 241 LDQAAKIELSAGKDPMGLAAAALYLSCVINGENKTQKDIAVSAGVTEVTIRNR 293
>gi|9909704|emb|CAC04514.1| transcription factor II B-related factor [Homo sapiens]
Length = 222
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 21/140 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVKN------AAGQ----------SQLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV++ A GQ L G F + E S
Sbjct: 5 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 61
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 62 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 119
Query: 127 CRQKSKPFLLIDFSNYLNIN 146
CR + P +L+D S+ L ++
Sbjct: 120 CRTEGTPHMLLDLSDLLQVD 139
>gi|167044706|gb|ABZ09376.1| putative transcription factor TFIIB repeat protein [uncultured
marine microorganism HF4000_APKG7N23]
Length = 242
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S +R + +A +++ ++ A IG ++ A Y AV N +GR E V A+ LY
Sbjct: 49 SADRNLAQALNELNRL--ASKIGLHRQVREEAAMLYRRAVQDNLVRGRSVEGVAAAALYG 106
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
ACR+ P L + + + E+G Y YI+ E + L+ P++++ +F
Sbjct: 107 ACRRCEVPRTLSEITEASRASKKEVGRTY------RYISRELKLNLQPASPAVYIIRFCR 160
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
L LPG V A +IL +T+GR P+G+ AA+Y++++ + + ++ I
Sbjct: 161 ELELPG---YVESAAINILNQAIEAELTSGRGPTGVAAAAIYIASVVYDQRKTQKTIADT 217
Query: 244 VHICEATLMKRLIEF 258
V + E T+ R E
Sbjct: 218 VGVTEVTIRNRYKEL 232
>gi|167044633|gb|ABZ09305.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG7F19]
Length = 300
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 9/201 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S ER + +A +M +MK L++ +D ++ A Y A+ R KGR +
Sbjct: 107 RSQAHSSAERNLRQALSEMDKMKAKLSL--TDPVIEKAAYIYRKAIERKLVKGRSIHGLV 164
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+C+Y +CR L D +N +NI ++ Y + + L + + DP +
Sbjct: 165 AACIYASCRNTETSRTLDDIANGINIRRKDVARCYRLIFRELDLK-----IPVPDPVKGV 219
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + G +K A +IL K+ I G+ P G+ AALY++ ++ G ++ +
Sbjct: 220 SRIAS--IAGLGEKTKRKAINILNKAKKLGIVAGKDPMGIAAAALYLACISSGGSKTQKE 277
Query: 240 IVKIVHICEATLMKRLIEFEN 260
I + E T+ R N
Sbjct: 278 ISIASGVTEVTIRNRCAGLRN 298
>gi|55376957|ref|YP_134807.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448634689|ref|ZP_21675087.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448640892|ref|ZP_21677679.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651198|ref|ZP_21680267.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448678748|ref|ZP_21689755.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448689160|ref|ZP_21694897.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229682|gb|AAV45101.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445749662|gb|EMA01107.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445761417|gb|EMA12665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445770725|gb|EMA21783.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445772735|gb|EMA23780.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779030|gb|EMA29972.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 319
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V +CLY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATACLYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + S+ + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RQEGIPRSLEEVSDVSRVEQKEIGRTYRYVAQELELK-----MEPVDPKQYVPRFASELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 L--SEEVQSKANEIIDTTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|433593418|ref|YP_007296159.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448333396|ref|ZP_21522596.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307928|gb|AGB33739.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445622834|gb|ELY76276.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 320
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL I S + VA Y A+ + +GR E V +CLY AC
Sbjct: 132 ERNLQFALSEIDRMASALGIPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + ++ + E+G Y + Q L +A ++ VDP ++ +F L
Sbjct: 190 RREGIPRSLEEIADVSRVERKEIGRTYRYIAQELSLA-----MEPVDPKEYVPRFCSEL- 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
++ V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 -DSSETVQAKATEIIDTTAEQGLLSGKSPTGFAAAAIYAASLLCNEKRTQKEVAAVAQVT 302
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 303 EVTIRNRYQE 312
>gi|399578753|ref|ZP_10772498.1| Transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236212|gb|EJN57151.1| Transcription initiation factor IIB [Halogranum salarium B-1]
Length = 327
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 11/191 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY+AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVAAVIYRRALDTDLIRGRSIEGVATSALYIAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ+ P L + S+ ++ E+G Y YIA E + + VDP +L +F L
Sbjct: 189 RQEGIPRSLEEVSSVARVDRREIGRTY------RYIAHELGLPMSPVDPKQYLPRFCSEL 242
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
++ V A I+ + + +G+ P+G AA+Y +AL K ++ DI K+ +
Sbjct: 243 EL--SEDVQQRATTIIERTTAEGLHSGKSPTGFAAAAIYTAALLCNEKRTQRDIAKVAQV 300
Query: 247 CEATLMKRLIE 257
E T+ R E
Sbjct: 301 TEVTIRNRYRE 311
>gi|407465174|ref|YP_006776056.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048362|gb|AFS83114.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 315
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 9/195 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ AS ++ + +A ++ +K+ L++ SD ++ A Y A+ + KGR +
Sbjct: 113 RSKVNASSDKNLRQALSELSTLKDKLSL--SDAVIEKASYIYRKALEKGLVKGRSISALI 170
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+ LY ACR P L D S+ NI ++ Y L Q L + + VDP +
Sbjct: 171 AASLYAACRDTETPRTLKDVSDAGNIKKKDISRCYRILHQELELK-----MPVVDPVQCV 225
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + G +K A +L + + G+ P GL AALY+S + +G ++ D
Sbjct: 226 ARIASSI--GITEKTKRYAVKVLKDAQAHEESAGKDPMGLAAAALYLSCVKNGEDKTQRD 283
Query: 240 IVKIVHICEATLMKR 254
I + ++ E T+ R
Sbjct: 284 IAEAANVTEVTIRNR 298
>gi|338753414|ref|NP_001229719.1| transcription factor IIIB 90 kDa subunit isoform 8 [Homo sapiens]
gi|16876927|gb|AAH16743.1| BRF1 protein [Homo sapiens]
gi|119602314|gb|EAW81908.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_c
[Homo sapiens]
gi|410332911|gb|JAA35402.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
Length = 208
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 21/140 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNIN 146
CR + P +L+D S+ L ++
Sbjct: 140 CRTEGTPHMLLDLSDLLQVD 159
>gi|448582204|ref|ZP_21645708.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448604362|ref|ZP_21657614.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448624090|ref|ZP_21670163.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445731852|gb|ELZ83435.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445744522|gb|ELZ95998.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445750057|gb|EMA01496.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 296
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 95/190 (50%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 107 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVATSALYAAC 164
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 165 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 218
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+K+V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ +
Sbjct: 219 -DLSKEVQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVT 277
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 278 EVTIRNRYQE 287
>gi|320100432|ref|YP_004176024.1| transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
gi|319752784|gb|ADV64542.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
Length = 315
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S ER + +A +++ ++ + LN+ + A R Y AV R +GR E V A+ +YL
Sbjct: 123 SVERNLAQAMNELDRLADVLNL--PSYVKEEAARIYREAVDRGLVRGRSIESVIAAAIYL 180
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
ACR+ P L + + + I E+ Y L + L I + DP+ ++ +
Sbjct: 181 ACREMKVPRSLDEITRHTRIGRKEIARCYRLLLRELRIK-----VSTTDPADYVPRIVHG 235
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L LPG K+ A +I+ + K +T G+ P+GL AA+Y++A G K ++ +I I
Sbjct: 236 LGLPGQAVKL---AIEIINTAKEHGVTGGKDPAGLAAAAVYMAAERLGEKKTQKEIAHIA 292
Query: 245 HICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 293 GVTEVTVRNRYKEL 306
>gi|288559971|ref|YP_003423457.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
gi|288542681|gb|ADC46565.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
Length = 264
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACRQ P L + +
Sbjct: 85 RDSSRLGLPRSVREAASVIYRSAVENKLIRGRSIEGVVAASLYAACRQCKVPRTLDEIAE 144
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L+I L P ++ +F L G + +V + +I
Sbjct: 145 VSRVSKKEVGRTYRFLTRELHIK-----LPPTSPVDYVPRFASEL--GLSGEVQSRSIEI 197
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 260
+ +T+GR P+G+ AALY++++ G + ++ D+ + + E T+ R E E
Sbjct: 198 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADVAGVTEVTIRNRYKELTEQ 257
Query: 261 TDSG 264
++G
Sbjct: 258 LETG 261
>gi|426378233|ref|XP_004055847.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Gorilla
gorilla gorilla]
Length = 208
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 21/140 (15%)
Query: 23 CDRCGKVLEDHNFSTEATFVK---------------NAAGQS-QLSGNFVRTIQSEYGAS 66
C CG VLED+ +E FV+ + AG++ L G F + E S
Sbjct: 25 CTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKE---S 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + ++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL
Sbjct: 82 RAQTLQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLV 139
Query: 127 CRQKSKPFLLIDFSNYLNIN 146
CR + P +L+D S+ L ++
Sbjct: 140 CRTEGTPHMLLDLSDLLQVD 159
>gi|156938159|ref|YP_001435955.1| transcription initiation factor IIB [Ignicoccus hospitalis KIN4/I]
gi|189029852|sp|A8AC96.1|TF2B_IGNH4 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|156567143|gb|ABU82548.1| Transcription initiation factor IIB (TFIIB) [Ignicoccus hospitalis
KIN4/I]
Length = 316
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 105/241 (43%), Gaps = 25/241 (10%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
L DH ST A +LS + +Q + +R + A +++ +M
Sbjct: 70 LHDHGLSTVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRM 129
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
N LN+ +I A Y AV + +GR E V A+ +Y ACR +P L + +
Sbjct: 130 ANLLNL--PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIAK 187
Query: 142 YLNINVYELGAVYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197
L +N E+ Y + + L IAD + + ++ ++ L G+ + +
Sbjct: 188 KLEVNRKEVARCYRLITKELKLKVPIADAMDHIPRIGEALKLR---------GD--IIEY 236
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 257
A I+ +K IT G+ P+G+ A +Y++ + G + ++ +I + + E T+ R E
Sbjct: 237 AMKIMEKIKGHPITAGKDPAGIAAAVIYIAVMQKGERRTQKEIANVAGVTEVTVRNRYKE 296
Query: 258 F 258
Sbjct: 297 I 297
>gi|448292886|ref|ZP_21483207.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448543300|ref|ZP_21624869.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448550186|ref|ZP_21628709.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448559542|ref|ZP_21633616.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448572791|ref|ZP_21640552.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448597013|ref|ZP_21654151.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445571861|gb|ELY26404.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445706844|gb|ELZ58717.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710932|gb|ELZ62727.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445711961|gb|ELZ63747.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445719563|gb|ELZ71242.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445740894|gb|ELZ92399.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 296
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 95/190 (50%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 107 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVATSALYAAC 164
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 165 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 218
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+K+V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ +
Sbjct: 219 -DLSKEVQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVT 277
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 278 EVTIRNRYQE 287
>gi|345005737|ref|YP_004808590.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321363|gb|AEN06217.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 318
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 130 ERNLQFALSEVDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 187
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 188 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASEL- 241
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ ++ +
Sbjct: 242 -GLSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVT 300
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 301 EVTIRNRYQE 310
>gi|389846162|ref|YP_006348401.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616218|ref|ZP_21664928.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243468|gb|AFK18414.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750873|gb|EMA02310.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 326
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 137 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 194
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 195 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 248
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+K+V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ +
Sbjct: 249 -DLSKEVQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVT 307
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 308 EVTIRNRYQE 317
>gi|336373760|gb|EGO02098.1| hypothetical protein SERLA73DRAFT_177837 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386576|gb|EGO27722.1| hypothetical protein SERLADRAFT_461642 [Serpula lacrymans var.
lacrymans S7.9]
Length = 347
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 11/190 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + AF D+ + ++ ++ I +AK+ Y + +G+ E V A+C+++AC
Sbjct: 126 ERNLLAAFRDIGSWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIAD-----ESNVLKQVDPSIFLHKF 182
RQ P + N +++ LG Y L Q +A +S P L ++
Sbjct: 184 RQAHVPRTFREICNLTHVSKKTLGQCYKALEQAFNLAPGASAHQSATAPSSGPENLLVRY 243
Query: 183 TDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIV 241
+ L LP + +C DI+ ++ I GR P + G A+Y + L G S DI
Sbjct: 244 CNHLDLPPNVQSICG---DIIVEARKHGIADGRSPVSIAGGAIYFTCLLLGKPKSARDIS 300
Query: 242 KIVHICEATL 251
+ + E T+
Sbjct: 301 AVAGVSEGTI 310
>gi|335436571|ref|ZP_08559364.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334897534|gb|EGM35665.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 323
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 98/194 (50%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ N GR E V + LY
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDENLLPGRSIEGVSTASLYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A RQ P L + N + E+ Y Y+ E N+ +K DP+ ++ +F
Sbjct: 188 AARQAGNPRSLDEIDNVSRVEKDEVARTYR------YVVRELNLEVKPADPTSYVPRFAS 241
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L +++ ARD+L + KR+ + +G+ P GL AA+Y ++L K +++++ ++
Sbjct: 242 DL--DLSEEAERHARDLLENAKREGVHSGKSPVGLAAAAIYAASLLANEKVTQNEVSEVA 299
Query: 245 HICEATLMKRLIEF 258
+I E T+ R E
Sbjct: 300 NISEVTIRNRYHEL 313
>gi|322370540|ref|ZP_08045098.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549957|gb|EFW91613.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 328
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 18/207 (8%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + A Y A+ + GR E V S +Y
Sbjct: 134 SKERNLKQALGEIDRMASALGLPKN--VRETASVIYRRALDDDLLPGRSIEGVATSAVYA 191
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + I+ E Y + + L + ++ DP ++ +F
Sbjct: 192 AARQTGVPRSLDEVAAVSRIDEMEFKRTYRYIVRELGLE-----IQPADPLSYVSRFASD 246
Query: 186 LLPGGNKKVCD----TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIV 241
L + D A+D+L + K + +G+ P GL AA+Y +L K ++S++
Sbjct: 247 L------DISDESERRAKDLLKTAKEQGVHSGKSPVGLAAAAVYAGSLLSNEKVTQSEVS 300
Query: 242 KIVHICEATLMKRLIE-FENTDSGSLT 267
+ ++ E T+ R E E + G +T
Sbjct: 301 DVANVSEVTIRNRYQELLEASQDGGVT 327
>gi|257388719|ref|YP_003178492.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171026|gb|ACV48785.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 317
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V SCLY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATSCLYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + S+ + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 187 RQEGIPRSLEEVSDVSRVEQKEIGRTYRYVAQELKLK-----MEPVDPKQYVPRFASELE 241
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 242 L--SEEVQSKANEIIDVTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 299
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 300 EVTIRNRYQE 309
>gi|448420259|ref|ZP_21581021.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445673877|gb|ELZ26432.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 317
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 241 -GLSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 299
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 300 EVTIRNRYQE 309
>gi|161527532|ref|YP_001581358.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338833|gb|ABX11920.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 301
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 25/237 (10%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
+ D +T V A L+ + TI+ S+ +R +AF ++ ++
Sbjct: 68 MHDMGLATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELNRL 127
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
K+ L I SD ++ A Y A+ + +GR + AS LY ACR P L D
Sbjct: 128 KDKLAI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDVEQ 185
Query: 142 YLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197
NI ++ Y L + L + D + ++ I + + T R
Sbjct: 186 AANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRY----------- 234
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
A +L + + ++ G+ P GL AALY+S + +G ++ DI + ++ E T+ R
Sbjct: 235 AVKVLKKAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRNR 291
>gi|326921138|ref|XP_003206821.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Meleagris
gallopavo]
Length = 737
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 64/130 (49%), Gaps = 27/130 (20%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
DG + S IDD E+D Y+ NE E K +W + N +YL+EQ KEA A K
Sbjct: 505 DGELDLSGIDDSEIDRYILNETEAQIKAELWMKENADYLKEQKEKEARIAKEK------- 557
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 530
EL KE + K+AA+ + A TA EA +ML +K++SS
Sbjct: 558 -----------ELGIY---------KEHKPKKAAKKREPIQASTAGEAIEKMLEQKKISS 597
Query: 531 KINYDVLEKL 540
KINY+VL L
Sbjct: 598 KINYNVLRDL 607
>gi|325960055|ref|YP_004291521.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325331487|gb|ADZ10549.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 331
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 152 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 211
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 212 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELNLSG--EVQSKAIEI 264
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 260
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 265 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 324
Query: 261 TDSG 264
D G
Sbjct: 325 LDMG 328
>gi|156375639|ref|XP_001630187.1| predicted protein [Nematostella vectensis]
gi|156217203|gb|EDO38124.1| predicted protein [Nematostella vectensis]
Length = 146
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
CS+C P C CG VLED+ +E F +N+ G + G FV + ++
Sbjct: 5 CSNCGGSDIDLDPSRGDAVCMGCGSVLEDNIIVSEVQFQENSLGGTSAIGQFVSSEGNKA 64
Query: 64 G-------------ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
G SR +E + Q+ + L + + + A FY +AV + T
Sbjct: 65 GIGLGTGFRHGLAQESRAITLENGRKRINQLGHQLQMNQ--HCIDTAYNFYKLAVNKRLT 122
Query: 111 KGRRTEQVQASCLYLACRQKSKP 133
+GRRT V A+CLYL CR + P
Sbjct: 123 RGRRTAHVVAACLYLVCRTERTP 145
>gi|399577427|ref|ZP_10771180.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399237810|gb|EJN58741.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 325
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 17/236 (7%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSG------NFVRTIQSEYGASR--ERLMEKAFDDMRQM 81
+ D +TE + A LS N +RT Q + ER ++ A ++ +M
Sbjct: 90 MHDKGLTTEIGWRDKDANGHSLSNEKRKQMNRLRTWQQRIRTNDAGERNLQFALSEIDRM 149
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+AL G D + +A Y A+ + +GR E V L+ A R ++ P L + S+
Sbjct: 150 VSAL--GAPDNVQEMASVIYRRALDEDLIRGRSIEGVATGALHAAMRCEAIPRTLEEVSD 207
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ +G Y L Q L + + DPS ++ ++ L + V A +I
Sbjct: 208 VARVDHNRVGRAYRHLSQELGLE-----VSPTDPSQYVPRYCSAL--DVSSLVEQKATEI 260
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 257
+A + + G+ PSG +A+Y++++ G K +++D+ + + E T+ R E
Sbjct: 261 VADTTEEGLHAGKSPSGFAASAVYLASMLCGEKETQADVADVADVTEVTIRTRYQE 316
>gi|386874729|ref|ZP_10116955.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807352|gb|EIJ66745.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 301
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 25/237 (10%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
+ D +T V A L+ + TI+ S+ +R +AF ++ ++
Sbjct: 68 MHDMGLATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELNRL 127
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
K+ L I SD ++ A Y A+ + +GR + AS LY ACR + P L D
Sbjct: 128 KDKLAI--SDAVIEKAAYIYRKALEKGLVRGRSISALMASALYAACRDTATPRNLKDVEE 185
Query: 142 YLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197
NI ++ Y L + L + D + ++ I + + T R
Sbjct: 186 AANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRY----------- 234
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
A +L + + ++ G+ P GL AALY+S + +G ++ DI + ++ E T+ R
Sbjct: 235 AVKVLKLAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRNR 291
>gi|410720379|ref|ZP_11359735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
gi|410601161|gb|EKQ55681.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
Length = 340
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 161 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 220
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 221 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELNLSG--EVQSKAIEI 273
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 260
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 274 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 333
Query: 261 TDSG 264
D G
Sbjct: 334 LDMG 337
>gi|448613430|ref|ZP_21663310.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740327|gb|ELZ91833.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 326
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 137 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 194
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 195 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 248
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+K+V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 249 -DLSKEVQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 307
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 308 EVTIRNRYQE 317
>gi|325959508|ref|YP_004290974.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325330940|gb|ADZ10002.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 325
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 7/187 (3%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 146 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAE 205
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 206 VSRVGKKEVGRTYRFLTRELNIK-----LPPTSPVDYIPRFASELNLSG--EVQSKAIEI 258
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261
+ + +T+G+ P+G+ AALY++++ G + ++ D+ ++ + E T+ R E
Sbjct: 259 INNAMAKGLTSGKGPTGVAAAALYIASVLLGERKTQRDVAEVAGVTEVTIRNRYKELSEE 318
Query: 262 DSGSLTI 268
LTI
Sbjct: 319 IEMGLTI 325
>gi|257051641|ref|YP_003129474.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256690404|gb|ACV10741.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 330
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ N GR E V + LY
Sbjct: 135 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDENLLPGRSIEGVATASLYA 192
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A RQ P L + I EL Y Y+ E N+ ++ DP ++ +F
Sbjct: 193 AARQAGNPRSLDEIERVSRIGRMELTRTYR------YVVRELNLEVQPADPESYVPRFVS 246
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L N++V AR+++ S +++ + +G+ P G+ AA+Y +AL + ++ +I ++
Sbjct: 247 DLEL--NEEVSRRARELVDSARKEGVLSGKSPVGIAAAAIYAAALLSNERVTQGEISEVA 304
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 305 DISEVTIRNRYKEL 318
>gi|392587013|gb|EIW76348.1| transcription initiation factor IIB [Coniophora puteana RWD-64-598
SS2]
Length = 353
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 14/213 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + AF D+ + ++ ++ I +AK+ Y + +G+ E V A+C+++AC
Sbjct: 130 ERNLLTAFRDIGGWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIAC 187
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES-------NVLKQVDPSIFLH 180
RQ P + N N++ LG Y L Q + S + P L
Sbjct: 188 RQAHVPRTFREICNLTNVSKKTLGQCYKALEQAFNLTPGSGSGGASIHPSPSTGPENLLV 247
Query: 181 KFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
++ + L LP + +C DI+ + ++ I GR P + G A+Y + G S D
Sbjct: 248 RYCNHLDLPANVQSICG---DIIVAARKHGIADGRSPVSIAGGAIYFTCHLLGKAKSARD 304
Query: 240 IVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272
I + + E T+ K + TD L +D++
Sbjct: 305 ISSVAGVSEGTI-KLVYRLYYTDREKLVKQDWI 336
>gi|409049636|gb|EKM59113.1| hypothetical protein PHACADRAFT_249341 [Phanerochaete carnosa
HHB-10118-sp]
Length = 350
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 13/213 (6%)
Query: 47 GQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA 106
G S L+ R + ER + +AF D+ + ++ ++ I +AK+ Y +
Sbjct: 107 GGSGLARELQRAASRGSASRSERNLLQAFRDISSWCDQFSLPKT--ISDIAKQLYKRSDE 164
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
+G+ E V A+C+++ACR+ P + N +++ LG Y QL Q +
Sbjct: 165 EKLLRGKPLEAVIAACIFIACRKAHVPRTFREICNLTHVSKKVLGQCYKQLEQAFNLTPG 224
Query: 167 SNVLKQVD-------PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
++ +Q P L ++ + L LP + +C DI+ + I GR P
Sbjct: 225 ASADRQTSSATSSTGPEDLLVRYCNHLDLPPNVQPICS---DIIVKARDLGIALGRSPIS 281
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
+ G A+Y + G S DI + + EAT+
Sbjct: 282 VAGGAIYFTCHLLGKPKSMKDISAVAGVSEATI 314
>gi|313126498|ref|YP_004036768.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292863|gb|ADQ67323.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 317
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 241 -GLSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 299
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 300 EVTIRNRYQE 309
>gi|448579977|ref|ZP_21644806.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445722650|gb|ELZ74307.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 325
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V +CLY AC
Sbjct: 136 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAAC 193
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + + + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 194 RKEGIPRSLEEIAEVSRVERKEIGRTYRYVSQELGLE-----MRPVDPKKYVPRFSSEL- 247
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+K+V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 248 -DLSKEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 306
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 307 EVTIRNRYQE 316
>gi|15678905|ref|NP_276022.1| transcription initiation factor IIB [Methanothermobacter
thermautotrophicus str. Delta H]
gi|14195233|sp|O26971.1|TF2B_METTH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2621979|gb|AAB85383.1| transcription initiation factor TFIIB [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 310
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAE 190
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L I L P ++ +F L G + +V A +I
Sbjct: 191 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIEI 243
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 260
+ + +T+GR P+G+ AALY++++ G ++ D+ ++ + E T+ R E E
Sbjct: 244 IEMAMENGLTSGRGPTGVAAAALYIASVLLGEHKTQRDVAEVAGVTEVTIRNRYKELTEQ 303
Query: 261 TDSG 264
D G
Sbjct: 304 LDLG 307
>gi|313127213|ref|YP_004037483.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288315|ref|ZP_21479515.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293578|gb|ADQ68038.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569834|gb|ELY24404.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 138 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 195
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S+ + E+G Y + Q L + +K VDP ++ +F+ L
Sbjct: 196 RKEGIPRSLEEISDVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFSSEL- 249
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+K+V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 250 -DLSKEVQSKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 308
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 309 EVTIRNRYQE 318
>gi|218883370|ref|YP_002427752.1| transcription initiation factor IIB [Desulfurococcus kamchatkensis
1221n]
gi|218764986|gb|ACL10385.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
kamchatkensis 1221n]
Length = 319
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S ER + +A +++ ++ + LN+ + A R Y AV + +GR E + A+ +YL
Sbjct: 127 SVERNLAQAMNELDRLSDILNL--PSYVKEEAARIYRNAVEKGIVRGRSIESIIAATIYL 184
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
ACR+ P L + + + +N E+ Y L + L+I + DP ++ +
Sbjct: 185 ACREMKVPRSLDEITRHTRVNRKEIARCYRLLLRELHIK-----VTTTDPVDYVPRIVHG 239
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L LPG K+ A +I+ K +T G+ P+GL AA+Y++A G K ++ +I +
Sbjct: 240 LGLPGQAVKI---AIEIINKAKEQGVTGGKDPAGLAAAAVYIAAEQLGEKRTQKEIAHVA 296
Query: 245 HICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 297 GVTEVTVRNRYKEL 310
>gi|399578525|ref|ZP_10772272.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236411|gb|EJN57348.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A +M +M +AL + S VA Y A+ + +GR E V CLY AC
Sbjct: 131 ERNLQFALSEMDRMASALGVPRSTR--EVASVIYRRALNEDLIRGRSIEGVATGCLYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ+ P L + ++ + E+G Y Y+A E ++ ++ VDP F+ +F L
Sbjct: 189 RQEGIPRSLDEVADVSRVPYQEIGRTY------RYVAKELSLEMRPVDPKEFVPRFASEL 242
Query: 187 -LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
+P ++V A +I+ + + +G+ P+G AALY + L K ++ ++ +
Sbjct: 243 DVP---EEVEQKANEIIDTSAEAGLLSGKSPTGFAAAALYAAGLLCNKKRTQREVADVAQ 299
Query: 246 ICEATLMKRLIE 257
+ E T+ R E
Sbjct: 300 VTEVTIRNRYQE 311
>gi|448419740|ref|ZP_21580584.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674654|gb|ELZ27191.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 334
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 145 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 202
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S+ + E+G Y + Q L + +K VDP ++ +F+ L
Sbjct: 203 RKEGIPRSLEEISDVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFSSELE 257
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+K+V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 258 L--SKEVQSKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 315
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 316 EVTIRNRYQE 325
>gi|448726653|ref|ZP_21709047.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
gi|445793983|gb|EMA44547.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
Length = 305
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y ++A + +GR E V S LY AC
Sbjct: 116 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRSLADDLIRGRSIEGVATSALYAAC 173
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 174 RKEGIPRSLEEISEVSRVERKEIGRTYRYVSQELALE-----MRPVDPKKYVPRFCSELT 228
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A DI+ + + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 229 L--SEEVQAKANDIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 286
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 287 EVTIRNRYQE 296
>gi|76801491|ref|YP_326499.1| transcription initiation factor TFB 1 [Natronomonas pharaonis DSM
2160]
gi|76557356|emb|CAI48933.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 134 ERNLQFALSEIDRMSSALGVPRS--VREVASVIYRRALDDDLIRGRSIEGVATAALYAAC 191
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + L+ VDP ++ +F L
Sbjct: 192 RQEGIPRSLDEVADVARVEQKEIGRTYRYIAQELSLG-----LEPVDPVQYVPRFCSEL- 245
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +++V R+I+ + +G+ P+G AA+Y ++L K ++ ++ ++ +
Sbjct: 246 -GLSEEVEQKTREIIEVTAEKGMLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVT 304
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 305 EVTIRNRYQE 314
>gi|448286652|ref|ZP_21477877.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445574029|gb|ELY28538.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 304
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 116 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 173
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 174 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 227
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 228 -GLSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 286
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 287 EVTIRNRYQE 296
>gi|335437678|ref|ZP_08560448.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334895047|gb|EGM33228.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 328
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 97/194 (50%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVATASLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A RQ P L + I+ EL Y Y+ E N+ +K DP ++ +F
Sbjct: 191 AARQAGNPRSLDEIERVSRIDRMELTRTYR------YVVRELNLEVKPADPESYVPRFVS 244
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L +++V AR+++ S +++ + +G+ P G+ AA+Y +AL + ++ ++ ++
Sbjct: 245 DL--DLSEEVSRQARELIESARKEGVLSGKSPVGIAAAAIYAAALLSNERITQGEVSEVA 302
Query: 245 HICEATLMKRLIEF 258
+I E T+ R E
Sbjct: 303 NISEVTIRNRYKEL 316
>gi|448456850|ref|ZP_21595506.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811447|gb|EMA61454.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 581
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 132 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S+ + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 190 RKEGIPRSLEEISDVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELE 244
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 245 --LSEEVQSKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 302
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 303 EVTIRNRYQE 312
>gi|448589961|ref|ZP_21650020.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735076|gb|ELZ86629.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 325
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V +CLY AC
Sbjct: 136 ERNLQFALSEVDRMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAAC 193
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + + + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 194 RKEGIPRSLEEIAEVSRVERKEIGRTYRYVSQELGLE-----MRPVDPKKYVPRFSSEL- 247
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+K+V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 248 -DLSKEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 306
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 307 EVTIRNRYQE 316
>gi|118576516|ref|YP_876259.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195037|gb|ABK77955.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 328
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 9/195 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+++ +S +R + +A ++M +MK+ L + +D ++ A Y A+ + +GR +
Sbjct: 134 RTQAHSSADRNLRQALNEMDKMKDKLAL--ADAVIEKAAYIYRKAMEKKLVRGRSIHGLV 191
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY ACR P L D + +NI ++ Y + + L + + VDP +
Sbjct: 192 AACLYAACRNTETPRTLDDIAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 246
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + N++ A IL K+ + G+ P G+ AALY++ + G S+ D
Sbjct: 247 SRIAS--IAELNERTKRRAITILDQAKKLGMVAGKDPMGIAAAALYLACIGSGEAKSQKD 304
Query: 240 IVKIVHICEATLMKR 254
I + E T+ R
Sbjct: 305 ISLASGVTEVTIRNR 319
>gi|14590724|ref|NP_142794.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|3257275|dbj|BAA29958.1| 208aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 208
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 5/162 (3%)
Query: 97 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 156
A R Y + TKGR E V A+C+Y++CR P L + + + + VY
Sbjct: 44 AVRIYRKLIKSGVTKGRSIESVAAACIYISCRLYKVPRTLDEIAKVAKEDKKVIARVYRL 103
Query: 157 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 216
+ + L ++ + +++ P ++ KF D L +++V A +L K IT+G+ P
Sbjct: 104 VVKKLGLSSKDMLIR---PEYYIDKFADEL--EVSERVKRRALRLLNEAKDKGITSGKNP 158
Query: 217 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
GL + LY+++L G + ++ +I ++ I E T+ R E
Sbjct: 159 LGLAASILYIASLLEGERRTQKEIARVAGITEVTIRNRYKEL 200
>gi|452206957|ref|YP_007487079.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083057|emb|CCQ36340.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 318
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 130 ERNLQFALSEIDRMSSALGVPRS--VREVASVIYRRALDDDLIRGRSIEGVATAALYAAC 187
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + L+ VDP ++ +F L
Sbjct: 188 RQEGIPRSLDEVAEVARVEQKEIGRTYRYIAQELSLG-----LEPVDPVQYVPRFCSEL- 241
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +++V R+I+ + +G+ P+G AA+Y ++L K ++ ++ ++ +
Sbjct: 242 -GLSEEVEQKTREIIEVTAEKGMLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVT 300
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 301 EVTIRNRYQE 310
>gi|383619979|ref|ZP_09946385.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|448696408|ref|ZP_21697882.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|445783614|gb|EMA34442.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
Length = 321
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 11/191 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + V+ Y A+ + +GR E V SCLY C
Sbjct: 133 ERNLQFALSEIDRMASALGVPRS--VREVSSVIYRRALTEDLIRGRSIEGVATSCLYAGC 190
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ+ P L + + + E+G Y Y+A E + +K VDP ++ +F L
Sbjct: 191 RQEGIPRSLEEVAEVSRVEKKEIGRTY------RYVAKELGLEMKPVDPKEYVPRFCSDL 244
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ +
Sbjct: 245 --EASEEVEMKATEIIDTTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQV 302
Query: 247 CEATLMKRLIE 257
E T+ R E
Sbjct: 303 TEVTIRNRYQE 313
>gi|340344812|ref|ZP_08667944.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519953|gb|EGP93676.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 309
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 11/205 (5%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ S +R + +A ++ ++K+ L++ SD ++ A Y A+ + +GR +
Sbjct: 113 RSKVHESADRNLRQALSELSRLKDKLSL--SDAVIEKAAYIYRKALEKGLVRGRSISALI 170
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
AS LY ACR P L D S+ NI ++ Y L + L + + VDP +
Sbjct: 171 ASALYAACRDTETPRTLKDVSDAGNIKKKDIARCYRLLHRELDLK-----MPVVDPIQCV 225
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ +L G ++K A +L + + + G+ P GL AALY+S + + ++ D
Sbjct: 226 ARIASKL--GISEKTKRFAVKVLKTAQEHEESAGKDPMGLAAAALYLSCVNNCENMTQRD 283
Query: 240 IVKIVHICEATLMKRL--IEFENTD 262
I + + E T+ R + + TD
Sbjct: 284 IAEAASVTEVTIRNRYKGLRLDQTD 308
>gi|84490148|ref|YP_448380.1| transcription initiation factor IIB [Methanosphaera stadtmanae DSM
3091]
gi|121731831|sp|Q2NEL6.1|TF2B_METST RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|84373467|gb|ABC57737.1| transcription initiation factor IIB (TFIIB) [Methanosphaera
stadtmanae DSM 3091]
Length = 311
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 8/184 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ P L + ++
Sbjct: 132 RDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIAD 191
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L+I L P ++ +F L G V A +I
Sbjct: 192 VSRVSKKEVGRTYRFLTRELHIR-----LPPTSPIDYVPRFASELNLSG--VVQSKAIEI 244
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 260
+ + +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 245 INQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 304
Query: 261 TDSG 264
D G
Sbjct: 305 LDMG 308
>gi|408382816|ref|ZP_11180358.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
gi|407814618|gb|EKF85243.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
Length = 307
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 128 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 187
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 188 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELNLSG--EVQSKAIEI 240
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 260
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 241 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 300
Query: 261 TDSG 264
D G
Sbjct: 301 LDMG 304
>gi|312379936|gb|EFR26073.1| hypothetical protein AND_08083 [Anopheles darlingi]
Length = 557
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 28/137 (20%)
Query: 406 TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 465
T+E DG D++D E+D Y+ EEE + K +W ++N EYL+E KE AA
Sbjct: 259 TSEQDDGELITDDLNDDEMDAYIMTEEEANTKNQLWMQLNEEYLKELQVKEERAA----- 313
Query: 466 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 525
K EG ++ A+ GP+ TA EA ++L +
Sbjct: 314 -----KQREEGKPEKKKRRTTKRKAI------------------GPSSTAREAIEKILQE 350
Query: 526 KRLSSKINYDVLEKLFD 542
K++S+KINYD+L+ L D
Sbjct: 351 KKISNKINYDILKTLTD 367
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 64/98 (65%)
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
L G + + TA+ ++ MK+D I +GR+PSGLCGAAL ++A H + +DIV+IV I
Sbjct: 37 LSGEDTRSVMTAQRLVQRMKKDSIHSGRRPSGLCGAALLLAARMHDFGRTPNDIVRIVKI 96
Query: 247 CEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAA 284
E+TL KRL EF T S +LT+++FMA E +G A
Sbjct: 97 HESTLRKRLFEFGETPSSALTVDEFMAVDLEAEQGPPA 134
>gi|289192865|ref|YP_003458806.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
gi|288939315|gb|ADC70070.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
Length = 334
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 173 IYRGAVDKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYR---- 228
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 229 --FLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPT 283
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 284 GVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 324
>gi|312136694|ref|YP_004004031.1| transcription initiation factor iib (tfiib) [Methanothermus
fervidus DSM 2088]
gi|311224413|gb|ADP77269.1| Transcription initiation factor IIB (TFIIB) [Methanothermus
fervidus DSM 2088]
Length = 307
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ ++ + LN+ + + A Y AV + +GR E+V A+ LY AC
Sbjct: 116 ERNLAFALSELDRIASRLNLPRT--VRETASVIYRDAVKKKLIRGRSIEEVVAAALYAAC 173
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R+ + P L + + + +G Y L + L I L P ++ +F L
Sbjct: 174 RKCNVPRTLDEIAEVSGVKKKGVGRTYRFLARKLNIR-----LPPTSPIDYVPRFASEL- 227
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G + KV A +I+ + +T+GR P+G+ AALY++++ + ++ +I ++ I
Sbjct: 228 -GLSGKVQSKAIEIIKKAMKKGLTSGRGPTGVAAAALYIASVLLRERRTQREIAEVAGIT 286
Query: 248 EATLMKRLIEF 258
E T+ R E
Sbjct: 287 EVTIRNRYREL 297
>gi|118577046|ref|YP_876789.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195567|gb|ABK78485.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 303
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 17/191 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L I SD ++ A Y A+ + +GR + AS LY AC
Sbjct: 116 DRNYRQAFSELNRLKDKLAI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAAC 173
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFT 183
R + P L D NI ++ Y L + L + D + ++ I + + T
Sbjct: 174 RDTATPRNLKDVEEAANIKRKDIARCYRLLVKELDLRMPVTDSIQCVARISSHIGIAEKT 233
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
R A +L ++ ++ G+ P GL AALY+S + +G ++ DI
Sbjct: 234 KRY-----------AVVVLKEAQKHEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIADA 282
Query: 244 VHICEATLMKR 254
++ E T+ R
Sbjct: 283 ANVTEVTIRNR 293
>gi|448737144|ref|ZP_21719196.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445804357|gb|EMA54614.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 305
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y ++A + +GR E V S LY AC
Sbjct: 116 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRSLADDLIRGRSIEGVATSALYAAC 173
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 174 RKEGIPRSLEEISEVSRVERKEIGRTYRYVSQELALE-----MRPVDPKKYVPRFCSELT 228
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A DI+ + + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 229 L--SEEVQAKANDIIETTADEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 286
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 287 EVTIRNRYQE 296
>gi|452206769|ref|YP_007486891.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082869|emb|CCQ36145.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ N GR E V + LY
Sbjct: 132 SKERNLKQALGEIERMASALGLPEN--VRETASVIYRRALDDNLLPGRSIEGVSTAALYT 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A RQ P L + ++ EL Y YI E N+ +K DP ++ +F
Sbjct: 190 AARQAGIPRSLDEIERVSRVDRMELTRTYR------YIIRELNLEVKPADPESYIPRFVS 243
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G + +V AR+++ + + D + +G+ P GL AA+Y +AL K +++D+ ++
Sbjct: 244 DL--GLSDEVERRARELIEAARGDGLLSGKSPVGLAAAAVYAAALLCNEKVTQNDVSEVA 301
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 302 DISEVTIRNRYKEL 315
>gi|375083610|ref|ZP_09730629.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
gi|374741803|gb|EHR78222.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
Length = 306
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 19/239 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALN-- 86
+L D ST+ + S +SG+ I R + A D R + AL+
Sbjct: 68 MLHDKGLSTDIDWRNKDIHGSDISGSIRTKIYRLRMWQRRMRISDAID--RNLAFALSEL 125
Query: 87 ------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+G I +A Y AV +GR E + ++CLY ACR + P L +
Sbjct: 126 DRMGSQLGLPRNIREIAAVLYRKAVINKLVRGRSIEGMVSACLYAACRIANAPRTLDEIE 185
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
+ ++ E+G Y Y+A E N+ LK P ++ +F D+L G ++K A
Sbjct: 186 DVSKVDKKEIGRSYR------YLARELNLRLKPTSPIDYVIRFGDQL--GISEKTKRRAV 237
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
IL +T+G+ P+G+ AA+Y+++L G K ++ ++ ++ + E T+ R E
Sbjct: 238 KILNQAIEKGLTSGKGPTGIAAAAIYIASLLEGEKMTQREVAEVARVTEVTVRNRYKEL 296
>gi|448409173|ref|ZP_21574555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445673121|gb|ELZ25683.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 313
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V +CLY AC
Sbjct: 125 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAAC 182
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 183 RQEDIPRSLEEVSEVSRVEQKEIGRTYRYVAQELSLK-----MEPVDPKQYVPRFVSELE 237
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 238 L--SEEVQAKANEIIDVTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 295
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 296 EVTIRNRYQE 305
>gi|408403674|ref|YP_006861657.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364270|gb|AFU58000.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 269
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 11/188 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R + +AF ++ ++K+ L G SD ++ Y A R +GR + + LY+AC
Sbjct: 81 DRNLRQAFSELDRLKDKL--GVSDAVIEKTAYIYRKAQERGLVRGRTISAMVGAALYIAC 138
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R+ L D + NI +L +Y + L + + +DP + + +R
Sbjct: 139 RETGASRTLKDIAEIGNIKRKDLARIYRLVVMELDLK-----IPMIDPMKCIVRVANRAN 193
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
L K+V A +I+ + + I+ G+ P GL + LY++ L G +++DI + +
Sbjct: 194 LSERTKRV---AMNIMKGVTKSGISAGKDPMGLAASVLYLACLNTGESRTQTDIAEAAGV 250
Query: 247 CEATLMKR 254
E T+ R
Sbjct: 251 TEVTVRNR 258
>gi|393795800|ref|ZP_10379164.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 303
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 17/233 (7%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
+ D +T + A LS + TI+ S+ +R +AF ++ ++
Sbjct: 70 IHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELDRL 129
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
K L + SD ++ Y A+ + +GR + A+ LY ACR P L D +N
Sbjct: 130 KTKLAL--SDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVAN 187
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+NI ++ Y L + L + + V+P + + + G ++K A +I
Sbjct: 188 SINIKRKDIARCYRLLLRELDLK-----MPVVNPVKCISRISSN--AGLSEKTKRKAIEI 240
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
L + ++ G+ P GL AALY+S + +G ++ DI + E T+ R
Sbjct: 241 LDQAAKIELSAGKDPMGLAAAALYLSCVKNGEDKTQKDIAVAAGVTEVTIRNR 293
>gi|110667197|ref|YP_657008.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109624944|emb|CAJ51356.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 329
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 140 ERNLQFALSEVDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVSTSALYAAC 197
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 198 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSEL- 251
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+K+V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 252 -DLSKEVQSKADEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 310
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 311 EVTIRNRYQE 320
>gi|399578723|ref|ZP_10772468.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236182|gb|EJN57121.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A +M +M +AL G VA Y A+ + +GR E V SCLY AC
Sbjct: 131 ERNLQFALSEMDRMASAL--GAPRSTREVASVLYRRALNEDLIRGRSIEAVSTSCLYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + + + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RMEGIPRSLDEVTEVARVPYKEIGRTYRYIAQELKLE-----MQPVDPKEYVPRFASEL- 242
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +++V A +I+ + +G+ P+G AALY ++L K ++ ++ ++ +
Sbjct: 243 -GVSEEVKQKANEIIDVSAEQGLLSGKSPTGFAAAALYAASLLCNEKKTQREVAEVSQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|448331660|ref|ZP_21520921.1| transcription initiation factor IIB [Natrinema versiforme JCM
10478]
gi|445608983|gb|ELY62798.1| transcription initiation factor IIB [Natrinema versiforme JCM
10478]
Length = 235
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + +A Y A+ + +GR E V SCLY AC
Sbjct: 47 ERNLQFALSEIDRMASALGVPRS--VREIASVIYRRALDEDLIRGRSIEGVATSCLYAAC 104
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ P L + ++ + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 105 RQDGIPRSLEEIADVSRVERKEIGRTYRYVAQELSLE-----MEPVDPKEYVPRFCSEL- 158
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ D+ + +
Sbjct: 159 -DSSEEVLAKANEIIDVTADQGLLSGKSPTGYAAAAIYAASLLCNEKKTQRDVADVAQVT 217
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 218 EVTIRNRYQE 227
>gi|448503020|ref|ZP_21612884.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693422|gb|ELZ45574.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 335
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A++ N GR E V + LY
Sbjct: 143 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATASLYA 200
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L +F+ + EL Y + + L + ++ DP+ ++ +F R
Sbjct: 201 AARQVGNPRSLDEFTAVSRVEKMELTRTYRYVIRELGLR-----VQPADPTSYVPRFASR 255
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++ AR++L + IT+G+ P GL AA+Y +AL K ++S + +
Sbjct: 256 L--DLSEETERRARELLDDAASEGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSGVAD 313
Query: 246 ICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 314 VSEVTIRNRYKEL 326
>gi|329766227|ref|ZP_08257785.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137286|gb|EGG41564.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 303
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 17/233 (7%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
+ D +T + A LS + TI+ S+ +R +AF ++ ++
Sbjct: 70 IHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELDRL 129
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
K L + SD ++ Y A+ + +GR + A+ LY ACR P L D +N
Sbjct: 130 KTKLAL--SDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVAN 187
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+NI ++ Y L + L + + V+P + + + G ++K A +I
Sbjct: 188 SINIKRKDIARCYRLLLRELDLK-----MPVVNPVKCISRISSN--AGLSEKTKRKAIEI 240
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
L + ++ G+ P GL AALY+S + +G ++ DI + E T+ R
Sbjct: 241 LDQAAKIELSAGKDPMGLAAAALYLSCVKNGEDKTQKDIAVAAGVTEVTIRNR 293
>gi|448575781|ref|ZP_21642061.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448591050|ref|ZP_21650815.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445730722|gb|ELZ82310.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445734546|gb|ELZ86105.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 316
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 186 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 240 -NLSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 298
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 299 EVTIRNRYQE 308
>gi|20094057|ref|NP_613904.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|19887040|gb|AAM01834.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 341
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 86 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145
NI S IV A R Y AV ++ +GR E A+ L++AC+++ P + + + I
Sbjct: 127 NIPRS--IVDEAIRIYRKAVEKDLVRGRSIENTAAAALFMACKKRKHPRTIKEIAKLFGI 184
Query: 146 NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 205
++ + L + L + + DP +L +F L G ++ V AR+IL
Sbjct: 185 TPKDINRTHRVLLRHL-----NERMPAPDPKQYLSRFATEL--GVSEDVEMLAREILEKA 237
Query: 206 KRDWITTGRKPSGLCGAALYVSAL 229
++ +T R P+GL GAALY++ L
Sbjct: 238 EKKGLTVSRNPAGLAGAALYLAGL 261
>gi|390937904|ref|YP_006401642.1| transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
gi|390191011|gb|AFL66067.1| Transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
Length = 319
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 95/194 (48%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S ER + +A +++ ++ + LN+ + A R Y AV + +GR E + A+ +YL
Sbjct: 127 SVERNLAQAMNELDRLSDILNL--PSYVKEEAARIYRNAVEKGIVRGRSIESIIAATIYL 184
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
ACR+ P L + + + +N E+ Y L + L I + DP ++ +
Sbjct: 185 ACREMKVPRSLDEITRHTRVNRKEIARCYRLLLRELRIK-----VATTDPVDYVPRIVHG 239
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L LPG K+ A +I+ K +T G+ P+GL AA+Y++A G K ++ +I +
Sbjct: 240 LGLPGQAVKI---AIEIINKAKEQGVTGGKDPAGLAAAAVYIAAEQLGEKRTQKEIAHVA 296
Query: 245 HICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 297 GVTEVTVRNRYKEL 310
>gi|449502947|ref|XP_002200378.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Taeniopygia
guttata]
Length = 565
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 64/130 (49%), Gaps = 27/130 (20%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
DG + S IDD E+D Y+ NE E K +W + N +YL+EQ KEA A K
Sbjct: 333 DGELDLSGIDDSEIDRYILNEAEAQIKTELWMKENADYLKEQKEKEARIAKEK------- 385
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 530
EL KE + K++A+ + A TA EA +ML +K++SS
Sbjct: 386 -----------ELGIY---------KEHKPKKSAKKREPIQASTAGEAIEKMLEQKKISS 425
Query: 531 KINYDVLEKL 540
KINY+VL L
Sbjct: 426 KINYNVLRDL 435
>gi|15789546|ref|NP_279370.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235257|ref|YP_001688457.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195248|sp|Q9HSF7.1|TF2B7_HALSA RecName: Full=Transcription initiation factor IIB 7; Short=TFIIB 7
gi|10579892|gb|AAG18850.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726323|emb|CAP13104.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 323
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 134 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 191
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + +K VDP ++ +F L
Sbjct: 192 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSELE 246
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
++V A +I+ + + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 247 L--TEEVQSKANEIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 304
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 305 EVTIRNRYQE 314
>gi|296109616|ref|YP_003616565.1| transcription factor TFIIB cyclin-related protein
[methanocaldococcus infernus ME]
gi|295434430|gb|ADG13601.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus infernus ME]
Length = 320
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 11/192 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ ++ + L G + A Y AV + +GR E V A+ +Y AC
Sbjct: 129 ERNLAFALSELDRIASKL--GLPKHVKEHASLLYREAVRKGLIRGRSIEGVVAATIYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R+ P L + + ++ E+G Y L + L I L +P ++ +F L
Sbjct: 187 RKYRVPRTLDEIAEVSRVDKKEIGRTYRFLARELKIK-----LAPTNPIDYVPRFASELG 241
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
LPG +V A IL +T+GR P+G+ AA+Y++++ G + ++ ++ ++ +
Sbjct: 242 LPG---EVESKAIQILKKAAEKGLTSGRGPTGVAAAAIYIASVLLGHRRTQREVAEVAGV 298
Query: 247 CEATLMKRLIEF 258
E T+ R E
Sbjct: 299 TEVTIRNRYKEL 310
>gi|385802603|ref|YP_005839003.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728095|emb|CCC39217.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 329
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 140 ERNLQFALSEVDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVSTSALYAAC 197
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 198 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSEL- 251
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+K+V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 252 -DLSKEVQSKADEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 310
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 311 EVTIRNRYQE 320
>gi|304315034|ref|YP_003850181.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
gi|302588493|gb|ADL58868.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
Length = 310
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 8/184 (4%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRSCNVPRTLDEIAE 190
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y L + L I L P ++ +F L G + +V A +I
Sbjct: 191 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIEI 243
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 260
+ + +T+GR P+G+ AALY++++ G ++ D+ ++ + E T+ R E E
Sbjct: 244 IEMAMENGLTSGRGPTGVAAAALYIASVLLGECKTQRDVAEVAGVTEVTIRNRYKELTEQ 303
Query: 261 TDSG 264
D G
Sbjct: 304 LDLG 307
>gi|448424065|ref|ZP_21582191.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448448397|ref|ZP_21591210.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448478955|ref|ZP_21603961.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448491995|ref|ZP_21608663.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|448512210|ref|ZP_21616324.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448520833|ref|ZP_21618166.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445682730|gb|ELZ35143.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445692213|gb|ELZ44394.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445694530|gb|ELZ46655.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702969|gb|ELZ54908.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445814813|gb|EMA64771.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445822785|gb|EMA72547.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASSL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 241 -QLSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 299
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 300 EVTIRNRYQE 309
>gi|327259002|ref|XP_003214327.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Anolis
carolinensis]
Length = 672
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 404 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 463
D DG + + IDD E+D Y+ NE E K +W + N +YL+EQ KEA A K
Sbjct: 432 DLNENTEDGELDLNGIDDTEIDMYILNESEAQIKAELWMKENADYLKEQKEKEARIAKEK 491
Query: 464 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 523
EL KE + K++A+ + A TA EA +ML
Sbjct: 492 ------------------ELGIY---------KEHKPKKSAKKRELIQASTAGEAIEKML 524
Query: 524 TKKRLSSKINYDVLEKL 540
+K++SSKINY+VL L
Sbjct: 525 EQKKISSKINYNVLRDL 541
>gi|448343629|ref|ZP_21532552.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445622685|gb|ELY76131.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 329
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 96/200 (48%), Gaps = 9/200 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRER +++A ++ +M +AL G D++ A Y A+ + GR E V + LY
Sbjct: 137 SRERNLKQALGEIDRMASAL--GLPDDVRETASVIYRRALEDDLLPGRSIEGVATASLYA 194
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ E+ Y + + L + ++ DP ++ +F
Sbjct: 195 AARQAGTPRSLDEISAVSRVDKAEVARTYRYVVRELGLE-----VQPADPESYVPRFASD 249
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L ++ ARD+L + K I +G+ P GL AA+Y +AL + +++D+ ++
Sbjct: 250 LDLADETEL--RARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSEVAS 307
Query: 246 ICEATLMKRLIEFENTDSGS 265
I E T+ R E + G+
Sbjct: 308 ISEVTIRNRYHELLEAEDGA 327
>gi|171185160|ref|YP_001794079.1| transcription initiation factor IIB [Pyrobaculum neutrophilum
V24Sta]
gi|226703639|sp|B1YCX0.1|TF2B_THENV RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|170934372|gb|ACB39633.1| Transcription factor TFIIB cyclin-related [Pyrobaculum neutrophilum
V24Sta]
Length = 333
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 15/201 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++++++ I + A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLRSSMGIPRP--CIEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP++
Sbjct: 190 AAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPTL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V TA DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 301
Query: 238 SDIVKIVHICEATLMKRLIEF 258
D + E T+ R E
Sbjct: 302 KDFAVAAGVTEVTVRNRYKEL 322
>gi|76803221|ref|YP_331316.1| transcription initiation factor TFB 8 [Natronomonas pharaonis DSM
2160]
gi|76559086|emb|CAI50684.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S I VA Y A+ + +GR E V + LY AC
Sbjct: 136 ERNLQFALSEIDRMSSALGVPRS--IREVASVIYRRALDDDLIRGRSIEGVATAALYAAC 193
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 194 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MEPVDPQKYVPRFCSELE 248
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A+DI+ + + +G+ P+G AA+Y ++L K ++ ++ ++ +
Sbjct: 249 L--SEEVQSKAKDIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVT 306
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 307 EVTIRNRYQE 316
>gi|354612079|ref|ZP_09030031.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191657|gb|EHB57163.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 320
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + +K VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 L--SEEVQSKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|224035151|gb|ACN36651.1| unknown [Zea mays]
gi|413946303|gb|AFW78952.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 90
Score = 65.9 bits (159), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59
MV+C+ CA + + P +CC CGKVL+ ++ E TFVK+ GQS+L+G+ + +I
Sbjct: 1 MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTDEPTFVKDNKGQSRLAGSILESI 60
Query: 60 QSEYGASRERLMEKA 74
+S Y SR+R ++K
Sbjct: 61 ESGYSMSRQRTLDKG 75
>gi|222478746|ref|YP_002564983.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451648|gb|ACM55913.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 144 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 201
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S+ + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 202 RKEGIPRSLEEISDVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELE 256
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 257 L--SEEVQSKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 314
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 315 EVTIRNRYQE 324
>gi|448377625|ref|ZP_21560321.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
gi|445655569|gb|ELZ08414.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
Length = 323
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 188 AARQAGTPRSLDEISQVSRVDRMELTRTYRYIVRELSLE-----VKPADPEHYVPRFISD 242
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++ T+R++L S + D + +G+ P GL AA+Y +AL K +++++ ++ +
Sbjct: 243 L--DLSEETERTSRELLESARGDGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVAN 300
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 301 ISEVTIRNRYKEL 313
>gi|407462181|ref|YP_006773498.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045803|gb|AFS80556.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 297
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 16/219 (7%)
Query: 43 KNAAGQSQLSGN-----FVRTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVH 95
K+A G+S S N +R + S A S ER + K+ + +K L I S+ +
Sbjct: 78 KDAKGKSLSSSNKSRFNRLRVLDSRSKARKSSERTLVKSLTFLNGLKGKLGI--SENTIE 135
Query: 96 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 155
+ A +GR ++ + A+ LY++CRQ P L D S NI +L
Sbjct: 136 GTSSLFRRAQKHQLIRGRSSDDLMAAALYVSCRQTMTPRSLEDISEIANIT-----KKHL 190
Query: 156 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRK 215
Q + I + VL Q + S FL K ++ L G ++K A IL+ +++ G+
Sbjct: 191 QKSVRVLINEFGLVLPQYNISSFLTKLSNDL--GFSEKTKRYALKILSDVEKCGSAAGKN 248
Query: 216 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
P G A+LY++++ G S+S KI I TL R
Sbjct: 249 PIGQAAASLYLASMLMGENISQSTFSKISGISTVTLRNR 287
>gi|397774847|ref|YP_006542393.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397683940|gb|AFO58317.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 329
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 96/200 (48%), Gaps = 9/200 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRER +++A ++ +M +AL G D++ A Y A+ + GR E V + LY
Sbjct: 137 SRERNLKQALGEIDRMASAL--GLPDDVRETASVIYRRALEADLLPGRSIEGVATASLYA 194
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ E+ Y + + L + ++ DP ++ +F
Sbjct: 195 AARQAGTPRSLDEISAVSRVDKAEVARTYRYVVRELGLE-----VQPADPESYVPRFASD 249
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L ++ ARD+L + K I +G+ P GL AA+Y +AL + +++D+ ++
Sbjct: 250 LDLADETEL--RARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSEVAS 307
Query: 246 ICEATLMKRLIEFENTDSGS 265
I E T+ R E + G+
Sbjct: 308 ISEVTIRNRYHELLEAEDGA 327
>gi|433639108|ref|YP_007284868.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|433290912|gb|AGB16735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
Length = 323
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 188 AARQAGTPRSLDEISQVSRVDRMELTRTYRYIVRELSLE-----VKPADPEHYVPRFISD 242
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++ T+R++L S + D + +G+ P GL AA+Y +AL K +++++ ++ +
Sbjct: 243 L--DLSEETERTSRELLESARGDGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVAN 300
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 301 ISEVTIRNRYKEL 313
>gi|355778899|gb|EHH63935.1| hypothetical protein EGM_17013, partial [Macaca fascicularis]
Length = 316
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 404 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 463
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 88 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 147
Query: 464 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 523
EL KE + K++ + + A TA EA +ML
Sbjct: 148 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 180
Query: 524 TKKRLSSKINYDVLEKL 540
+K++SSKINY VL L
Sbjct: 181 EQKKISSKINYSVLRGL 197
>gi|448470225|ref|ZP_21600422.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808303|gb|EMA58375.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 317
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 241 -QLSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 299
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 300 EVTIRNRYQE 309
>gi|355693619|gb|EHH28222.1| hypothetical protein EGK_18610, partial [Macaca mulatta]
Length = 316
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 404 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 463
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 88 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 147
Query: 464 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 523
EL KE + K++ + + A TA EA +ML
Sbjct: 148 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 180
Query: 524 TKKRLSSKINYDVLEKL 540
+K++SSKINY VL L
Sbjct: 181 EQKKISSKINYSVLRGL 197
>gi|448503002|ref|ZP_21612866.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693404|gb|ELZ45556.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 241 -QLSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 299
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 300 EVTIRNRYQE 309
>gi|448567682|ref|ZP_21637607.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445711680|gb|ELZ63470.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 342
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 113/250 (45%), Gaps = 19/250 (7%)
Query: 29 VLEDHNFSTEATFV-KNAAGQSQLSGNF-----VRTIQSEYGA--SRERLMEKAFDDMRQ 80
++ D ST + K+A G S SG +RT + S+ER +++A ++ +
Sbjct: 98 MMHDKGLSTNIGWQNKDAYGNSLSSGQRQKMQRLRTWNERFRTRDSKERNLKQALGEVER 157
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL G D + A Y A+ + GR E V + +Y A RQ P L +
Sbjct: 158 MGSAL--GLPDTVRETASVIYRRALDDDLLPGRSIEGVATAAIYAAARQAGVPRSLDEVR 215
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
++ EL Y + + L + +K DP+ +L +F L V AR
Sbjct: 216 RVSRVDKMELTRTYRYVSRELGLD-----MKPADPAQYLPRFVSEL--DVTDDVERRARS 268
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE-FE 259
+L + KR I +G+ P GL AA+Y L + ++S++ ++ I E T+ R E E
Sbjct: 269 LLDNAKRQGIHSGKSPVGLAAAAIYAGGLLADEELTQSEVSEVTDISEVTIRNRYRELLE 328
Query: 260 NTD-SGSLTI 268
T SG +T+
Sbjct: 329 ATQKSGEMTV 338
>gi|448498359|ref|ZP_21610792.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445698780|gb|ELZ50819.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 186 RKEGIPRSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 240 -ELSEEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 298
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 299 EVTIRNRYQE 308
>gi|256810972|ref|YP_003128341.1| transcription initiation factor IIB [Methanocaldococcus fervens
AG86]
gi|256794172|gb|ACV24841.1| Transcription factor TFIIB cyclin-related [Methanocaldococcus
fervens AG86]
Length = 331
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y L +
Sbjct: 170 IYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLAR 229
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 230 ELGIK-----LTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPTG 281
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 282 VAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 321
>gi|448595941|ref|ZP_21653388.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445742395|gb|ELZ93890.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 317
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ ++ +
Sbjct: 241 -DLSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVT 299
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 300 EVTIRNRYQE 309
>gi|18312777|ref|NP_559444.1| transcription initiation factor IIB [Pyrobaculum aerophilum str.
IM2]
gi|21363011|sp|Q8ZWS3.1|TF2B_PYRAE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|18160260|gb|AAL63626.1| transcription initiation factor IIB (TFIIB) [Pyrobaculum aerophilum
str. IM2]
Length = 333
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 15/201 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++++A+ I + A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLRSAMGIPRP--CIEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 190 AAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPIL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V TA DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 301
Query: 238 SDIVKIVHICEATLMKRLIEF 258
D + E T+ R E
Sbjct: 302 KDFAVAAGVTEVTVRNRYKEL 322
>gi|257051172|ref|YP_003129005.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256689935|gb|ACV10272.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 96/193 (49%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ N GR E V + LY
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDENLLPGRSIEGVATASLYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + N + E+ Y + + L + +K DP+ ++ +F
Sbjct: 188 AARQAGNPRSLDEIDNVSRVEKDEVARTYRYVVRELKLE-----VKPADPTSYVPRFASD 242
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L ++ ARD+L + K++ + +G+ P GL AA+Y ++L K +++++ ++ +
Sbjct: 243 LEL--TEEAERHARDLLENAKQEGVHSGKSPVGLAAAAIYAASLLANEKVTQNEVSEVAN 300
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 301 ISEVTIRNRYHEL 313
>gi|448439368|ref|ZP_21588009.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691419|gb|ELZ43610.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 326
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 9/199 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V + LY
Sbjct: 133 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + E+ Y + + L + ++ DP ++ +F
Sbjct: 191 AARQAGTPRSLDEISAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 245
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++ + +
Sbjct: 246 L--GLSDEAERRARSLLDTAKSQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVAN 303
Query: 246 ICEATLMKRLIEFENTDSG 264
I E T+ R E + G
Sbjct: 304 ISEVTIRNRYHELLEAEDG 322
>gi|448434664|ref|ZP_21586438.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|448531800|ref|ZP_21621088.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445684660|gb|ELZ37033.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445707005|gb|ELZ58873.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 186 RKEGIPRSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 240 -ELSEEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 298
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 299 EVTIRNRYQE 308
>gi|448447532|ref|ZP_21591095.1| transcription initiation factor TFB [Halorubrum litoreum JCM 13561]
gi|445815444|gb|EMA65368.1| transcription initiation factor TFB [Halorubrum litoreum JCM 13561]
Length = 308
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 25/255 (9%)
Query: 10 HVTGHRPYDSQLCCDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGN--------FVR 57
H RPYD + C+R G L D STE +A G ++LSG
Sbjct: 54 HGPEWRPYDDE-GCERTGAPLTAARHDRGLSTEIGRGTDAKG-NELSGQKRRRLARMRRE 111
Query: 58 TIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+ + + ER + ++R++ +AL + SD + A + + A + +GR E
Sbjct: 112 QTRGRWRSKAERNLAHGLGEVRRLASALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEA 169
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+ A+ +Y ACR + L+ D S + + Y L + L + E V PS+
Sbjct: 170 IAAASIYGACRCNGRSRLVDDVSEMARVAESRVTNAYKTLNEELGLPAEP-----VSPSM 224
Query: 178 FLHKF-TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
F+ + +D P ++ AR + + +TTG P+G A LY + G +
Sbjct: 225 FVPRLASDLECP---DEIRQRARALAEQAEERGVTTGVHPAGFAAACLYKAGHEEGRWLT 281
Query: 237 KSDIVKIVHICEATL 251
+S+ + + +AT+
Sbjct: 282 QSEAADVANASKATV 296
>gi|393246466|gb|EJD53975.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 349
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 25/225 (11%)
Query: 64 GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
GA ER ++ AF ++ M ++ ++ +S I +AK+ Y A + + + V A+C+
Sbjct: 124 GARSERSIQTAFREISNMCDSFSLPKS--ISDIAKQLYKRADEEKLLRAKSLDAVIAACI 181
Query: 124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN-------VLKQVDPS 176
++ACRQ P + + +G Y L Q +A +N ++ P
Sbjct: 182 FIACRQAQVPRTFREICELTRVPKKIIGQCYKTLEQAFNLAPGANGSTNDRGIVAGTGPE 241
Query: 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
L ++ + L G + A DI+ + I GR P + GAA++ + H L +
Sbjct: 242 DLLVRYCNHL--GLPPNIQSYASDIIVEARNQGIAAGRSPVSIAGAAIFFTC--HLLDQT 297
Query: 237 KS--DIVKIVHICEATL----------MKRLIEFENTDSGSLTIE 269
KS DI + + E TL ++L++ E D+G +++
Sbjct: 298 KSVKDITGVAGVSEGTLKLVYKLLYADREKLVKQEWIDAGKASLD 342
>gi|357508869|ref|XP_003624723.1| hypothetical protein MTR_7g086760 [Medicago truncatula]
gi|355499738|gb|AES80941.1| hypothetical protein MTR_7g086760 [Medicago truncatula]
Length = 315
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 51/206 (24%)
Query: 249 ATLMKRLIEFENTDSGSLTIEDF--MARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDT 306
A + ++L+E + +S L +E+ MA++ E + A+ N P C+HKD+
Sbjct: 34 AAIREQLVELDLRES--LFVEELNTMAKEHEKNSEFKASTSKNLP-------CQCEHKDS 84
Query: 307 GKPF-ACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPF 365
+ GLC +C++ + A A++ E+E + A+A E FE
Sbjct: 85 KVSYCVLGLCETCFKHVLK--------ASNSAYKRQEKELL--AAALERDDFE------- 127
Query: 366 MSRVDKVQSPEPERVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVD 425
+ S++ + + D+T EA D S++FSDIDD EVD
Sbjct: 128 ----------------------SESSKDDDNDDSHRDDDSTAEAQDESESFSDIDDEEVD 165
Query: 426 GYLHNEEEKHYKKIIWEEMNREYLEE 451
GYL NEEE+HY++ WE +EY EE
Sbjct: 166 GYLLNEEERHYRQKTWENQYQEYYEE 191
>gi|222479916|ref|YP_002566153.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452818|gb|ACM57083.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 317
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 241 -QLSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 299
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 300 EVTIRNRYQE 309
>gi|110667821|ref|YP_657632.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803264|ref|YP_005839664.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625568|emb|CAJ51995.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728756|emb|CCC39917.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 317
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 129 ERNLQFALSEVDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + L+ VDP F+ +F+ L
Sbjct: 187 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LRPVDPKQFVPRFSSSL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 241 -HLSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 299
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 300 EVTIRNRYQE 309
>gi|448405176|ref|ZP_21572617.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
gi|445662584|gb|ELZ15349.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
Length = 325
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A++ + +GR E V SCLY C
Sbjct: 137 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRQALSEDLIRGRSIEGVATSCLYAGC 194
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ+ P L + + + E+G Y YIA E ++ +K DP ++ +F L
Sbjct: 195 RQEGIPRSLEEVTEVSRVGKKEIGRTY------RYIAKELSLEMKPADPKEYVPRFCSDL 248
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
K+ A +I+ + +G+ P+G AA+Y ++L K ++ ++ ++ +
Sbjct: 249 EVSEEVKM--KAIEIIDESAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQKEVAEVAQV 306
Query: 247 CEATLMKRLIE 257
E T+ R E
Sbjct: 307 TEVTIRNRYQE 317
>gi|329765337|ref|ZP_08256917.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138243|gb|EGG42499.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 303
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 94/195 (48%), Gaps = 9/195 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S +R + +A ++M ++K+ L + +D +V A Y A+ + +GR + +
Sbjct: 108 RSQAHSSADRNLRQALNEMDKLKDKLAL--TDAVVEKAAYIYRKAMEKKLVRGRSIQGLV 165
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY +CR P L D + +NI ++ Y + + L + + VDP +
Sbjct: 166 AACLYASCRNTETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 220
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + ++K A IL K+ + G+ P G+ AALY++ ++ G S+ D
Sbjct: 221 SRIAS--IAELSEKSKRKAVAILEQAKKIGMVAGKDPMGIAAAALYLACISTGEIKSQKD 278
Query: 240 IVKIVHICEATLMKR 254
I + E T+ R
Sbjct: 279 ISIASGVTEVTIRNR 293
>gi|448732994|ref|ZP_21715240.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
gi|445803327|gb|EMA53624.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
Length = 323
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 16/200 (8%)
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
+ER +++A ++ +M +AL + +S + A Y A+ N GR E V + L++A
Sbjct: 129 KERSLKQALSEIERMSSALGLPKS--VRETAGVIYRRALEENLLPGRSVEGVSTAALHIA 186
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDR 185
RQ + P L + I + Y Y+A E + L DP +L +F
Sbjct: 187 SRQANIPRSLDTLTEVSRIGKLPITRTYQ------YVARELEINLPPADPLEYLPRFVSA 240
Query: 186 LLPGGNKKVCDTARDILASMKRDWIT--TGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
L + +V +R++L ++ D + +G+ P GL AA+Y +L K ++ + ++
Sbjct: 241 L--DRSDEVERRSRELLETVSEDEPSYLSGKNPVGLAAAAVYAGSLLCNEKVTQKAVGEV 298
Query: 244 VHICEATLMKR---LIEFEN 260
I E T+ R L+EF++
Sbjct: 299 ADISEVTIRNRYKELLEFQD 318
>gi|448681685|ref|ZP_21691776.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445767555|gb|EMA18658.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 324
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 96/193 (49%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASD 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++V AR +L + K++ + +G+ P GL AA+Y ++L K ++S++ ++ +
Sbjct: 245 L--DLSEEVERRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSEVAN 302
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 303 ISEVTIRNRYHEL 315
>gi|448529404|ref|ZP_21620542.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445709166|gb|ELZ60999.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 324
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 12/199 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 131 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 189 AARQAGTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +
Sbjct: 244 L--GLSDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVAN 301
Query: 246 ICEATLMKR---LIEFENT 261
I E T+ R L+E E++
Sbjct: 302 ISEVTIRNRYHELLEAEDS 320
>gi|344212211|ref|YP_004796531.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448671788|ref|ZP_21687593.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343783566|gb|AEM57543.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445764924|gb|EMA16067.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 324
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 96/193 (49%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASD 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++V AR +L + K++ + +G+ P GL AA+Y ++L K ++S++ ++ +
Sbjct: 245 L--DLSEEVERRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSEVAN 302
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 303 ISEVTIRNRYHEL 315
>gi|448386369|ref|ZP_21564495.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445655320|gb|ELZ08166.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 324
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRER +++A ++ +M +AL + E A Y AV GR E + +CLY
Sbjct: 131 SRERNLKQALGEIERMASALGLPEP--CRETAGVIYRRAVEEELLPGRSIEAMATACLYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ+ P L+ F++ + + Y L L + ++ DP +L ++
Sbjct: 189 AARQQGTPRTLVAFASVSRVEKLPVQRAYRYLSSELGLK-----IEPADPIHYLPQYASE 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + AR IL + K + +GR P+GL AA+Y + ++ I +
Sbjct: 244 L--GVGDETERLARKILEAAKDRDLHSGRSPAGLAAAAIYGAGRLTDEGLTQERIGEETG 301
Query: 246 ICEATLMKRLIEF 258
+ T+ R E
Sbjct: 302 VSGVTVRNRYREL 314
>gi|407462627|ref|YP_006773944.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046249|gb|AFS81002.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 303
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 94/195 (48%), Gaps = 9/195 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S +R + +A ++M ++K+ L + +D ++ A Y A+ + +GR + +
Sbjct: 108 RSQAHSSADRNLRQALNEMDKLKDKLAL--TDAVIEKAAYIYRKAMEKKLVRGRSIQGLV 165
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY +CR P L D + +NI ++ Y + + L + + VDP +
Sbjct: 166 AACLYASCRNTETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 220
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + ++K A IL K+ + G+ P G+ AALY++ ++ G S+ D
Sbjct: 221 SRIAS--IAELSEKSKRKAIAILNEAKKMGVVAGKDPMGIAAAALYLACISTGEVKSQKD 278
Query: 240 IVKIVHICEATLMKR 254
I + E T+ R
Sbjct: 279 ISIASGVTEVTIRNR 293
>gi|379335328|gb|AFD03312.1| transcription factor TFIIB cyclin-related protein [uncultured
archaeon W4-93a]
Length = 307
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 11/214 (5%)
Query: 43 KNAAGQSQLSGNFVRTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRF 100
K +G + S +RT S A S +R + +A ++M ++K+ L + +D +V A
Sbjct: 91 KPLSGSMKSSIERLRTWDSRTQAHSSADRNLRQALNEMDKLKDKLAL--ADVVVEKAAYI 148
Query: 101 YGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160
Y A+ + +GR + A+CLY ACR P L D +N +NI ++ Y + +
Sbjct: 149 YRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLDDMANGINIRRKDVARCYRLIFRE 208
Query: 161 LYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLC 220
L + + VDP + + + ++K A IL K + G+ P G+
Sbjct: 209 LELK-----MPVVDPVKGVSRIAS--IADLSEKSKRKAIIILNKAKDVGMVAGKDPMGIA 261
Query: 221 GAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
AALY+S ++ G S+ +I + E T+ R
Sbjct: 262 AAALYLSCISSGESKSQKEISIASGVTEVTIRNR 295
>gi|292655630|ref|YP_003535527.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448291763|ref|ZP_21482468.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448540907|ref|ZP_21623828.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549383|ref|ZP_21627988.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555504|ref|ZP_21631544.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448571045|ref|ZP_21639556.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448585553|ref|ZP_21647946.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448603114|ref|ZP_21656935.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448623724|ref|ZP_21670081.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|291370098|gb|ADE02325.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445573768|gb|ELY28284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445709060|gb|ELZ60895.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712431|gb|ELZ64212.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445718249|gb|ELZ69952.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445722963|gb|ELZ74614.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445726253|gb|ELZ77870.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445746310|gb|ELZ97772.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445752252|gb|EMA03679.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 317
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 241 -DLSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 299
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 300 EVTIRNRYQE 309
>gi|161528495|ref|YP_001582321.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339796|gb|ABX12883.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 315
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 94/195 (48%), Gaps = 9/195 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S +R + +A ++M ++K+ L + +D ++ A Y A+ + +GR + +
Sbjct: 120 RSQAHSSADRNLRQALNEMDKLKDKLAL--TDAVIEKAAYIYRKAMEKKLVRGRSIQGLV 177
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY +CR P L D + +NI ++ Y + + L + + VDP +
Sbjct: 178 AACLYASCRNTETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 232
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + ++K A IL K+ + G+ P G+ AALY++ ++ G S+ D
Sbjct: 233 SRIAS--IAELSEKSKRKAIAILNEAKKMGVVAGKDPMGIAAAALYLACISTGEVKSQKD 290
Query: 240 IVKIVHICEATLMKR 254
I + E T+ R
Sbjct: 291 ISIASGVTEVTIRNR 305
>gi|448454975|ref|ZP_21594377.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445814355|gb|EMA64320.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 345
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 162 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 219
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 220 RQEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASSL- 273
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 274 -ELSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 332
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 333 EVTIRNRYQE 342
>gi|448581117|ref|ZP_21645107.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445733879|gb|ELZ85439.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 342
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 112/250 (44%), Gaps = 19/250 (7%)
Query: 29 VLEDHNFSTEATFV-KNAAGQSQLSGNF-----VRTIQSEYGA--SRERLMEKAFDDMRQ 80
++ D ST + K+A G S SG +RT + S+ER +++A ++ +
Sbjct: 98 MMHDKGLSTNIGWQNKDAYGNSLSSGQRQKMQRLRTWNERFRTRDSKERNLKQALGEVER 157
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL G D + A Y A+ + GR E V + +Y A RQ P L +
Sbjct: 158 MGSAL--GLPDTVRETASVIYRRALDDDLLPGRSIEGVATAAIYAAARQAGVPRSLDEVR 215
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
++ EL Y + + L + +K DP+ +L +F L V AR
Sbjct: 216 RVSRVDKMELTRTYRYVSRELGLD-----MKPADPAQYLPRFVSEL--DVTDDVERRARS 268
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE-FE 259
+L + KR I +G+ P GL AA+Y L + ++S++ + I E T+ R E E
Sbjct: 269 LLDNAKRQGIHSGKSPVGLAAAAIYAGGLLADEELTQSEVSDVTDISEVTIRNRYRELLE 328
Query: 260 NTD-SGSLTI 268
T SG +T+
Sbjct: 329 ATQKSGEMTV 338
>gi|18977059|ref|NP_578416.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|18892698|gb|AAL80811.1| transcription initiation factor IIB chain b homolog [Pyrococcus
furiosus DSM 3638]
Length = 283
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 18/253 (7%)
Query: 17 YDSQ---LCCDRCGKVLEDHNFSTE---ATFVKNAAGQSQLSGNFVR-----TIQSEYGA 65
YD Q + C +CG +L + +E T + ++ G F R + +
Sbjct: 27 YDRQHGEVFCKKCGSILATNLVDSELSRKTKTNDIPRYTKRIGEFTREKIYRLRKWQKKI 86
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S ER + A ++R++ L + + E A Y A R T+ E A+C+Y
Sbjct: 87 SSERNLVLAMSELRRLSGMLKLPKYVE--EEAAYLYREAAKRGLTRRIPIETTVAACIYA 144
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR P L + ++Y E+ + + + L + + + + P+ ++ KF D
Sbjct: 145 TCRLFKVPRTLNEIASYSKTEKKEIMKAFRVIVRNLNLTPKMLLAR---PTDYVDKFADE 201
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++V DIL + IT+G+ P L AALY+++L G + S+ +I ++
Sbjct: 202 L--ELSERVRRRTVDILRRANEEGITSGKNPLSLVAAALYIASLLEGERRSQKEIARVTG 259
Query: 246 ICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 260 VSEMTVRNRYKEL 272
>gi|270010201|gb|EFA06649.1| hypothetical protein TcasGA2_TC009572 [Tribolium castaneum]
Length = 150
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFV----RTI 59
C SC P C CG VLE + E F + A G + G FV +
Sbjct: 7 CKSCGSSDIEVDPARGDAVCTNCGSVLEVNIIVAEVQFEEGAHGTNSAIGQFVSADSKGG 66
Query: 60 QSEYGAS---------RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
+++GAS RE + KA + + Q+ N L + + + A F+ +A+ RN T
Sbjct: 67 ATKFGASFHVGAGVESREMTLRKARNGITQLCNQLQLNQ--HCIDTACNFFKMALNRNLT 124
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLL 136
KGR+ V A+C+YL CR + +L
Sbjct: 125 KGRKNTHVHAACVYLTCRTEGTARIL 150
>gi|448528883|ref|ZP_21620263.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710331|gb|ELZ62150.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + L+ VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LRPVDPKQFVPRFASSL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 241 -QLSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 299
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 300 EVTIRNRYQE 309
>gi|222479752|ref|YP_002565989.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452654|gb|ACM56919.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 326
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 9/200 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 191 AARQAGTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 245
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K + +G+ P GL AA+Y ++L K ++S++ + +
Sbjct: 246 L--GLSDEAERRARSLLNTAKEQGLHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVAN 303
Query: 246 ICEATLMKRLIEFENTDSGS 265
I E T+ R E + G+
Sbjct: 304 ISEVTIRNRYHELLEAEDGA 323
>gi|448448980|ref|ZP_21591478.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814072|gb|EMA64044.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 325
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 12/199 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +
Sbjct: 245 L--GLSDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVAN 302
Query: 246 ICEATLMKR---LIEFENT 261
I E T+ R L+E E++
Sbjct: 303 ISEVTIRNRYHELLEAEDS 321
>gi|448502246|ref|ZP_21612519.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445694402|gb|ELZ46531.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 325
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 12/199 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +
Sbjct: 245 L--GLSDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVAN 302
Query: 246 ICEATLMKR---LIEFENT 261
I E T+ R L+E E++
Sbjct: 303 ISEVTIRNRYHELLEAEDS 321
>gi|448492136|ref|ZP_21608730.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445691595|gb|ELZ43779.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 317
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 186 RKEGIPRSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 240 -ELSEEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 298
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 299 EVTIRNRYQE 308
>gi|254166941|ref|ZP_04873795.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254168893|ref|ZP_04875733.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596150|ref|YP_003482846.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
gi|197622157|gb|EDY34732.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624551|gb|EDY37112.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289533937|gb|ADD08284.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
Length = 312
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 17/237 (7%)
Query: 30 LEDHNFSTEAT------FVKNAAGQSQLSGNFVRTIQSEYGASR--ERLMEKAFDDMRQM 81
+ D STE + + KN +S+ +R Q S ER + +A ++ +M
Sbjct: 75 IHDKGLSTEISWKNKDSYGKNIPTRSRAQLYRLRKWQKRIRVSNSAERNLSQALQELERM 134
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ N+G ++ A Y AV N +GR E V A+ +Y ACR P L + S
Sbjct: 135 SS--NLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEIST 192
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
I E+G VY + + L + + P ++ +F +L G +V A +I
Sbjct: 193 VTRIKKREIGRVYRIMSRTLKLN-----IYPTKPEDYIDRFCSKLKLSG--EVKKKAYEI 245
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ + I +GR P+G+ AA+Y++A+ G + ++ ++ ++ + E T+ R E
Sbjct: 246 IKMARERDIISGRGPTGVAAAAIYIAAILMGERRTQREVAEVAGVTEVTIRNRYKEL 302
>gi|193084026|gb|ACF09700.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote AD1000-202-A2]
Length = 307
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 9/200 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S ER + +A +M ++K+ L + +D ++ A Y A+ R KGR +
Sbjct: 114 RSQAHSSAERNLRQALSEMDKLKDKLTL--TDNVIEKAAYIYRKAIERKLVKGRSIHGLV 171
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+C+Y ACR P L D + +NI ++ Y + + L + + DP +
Sbjct: 172 AACIYAACRITETPRTLDDIAEGINIKRKDVARSYRIIFRELDLK-----IPVADPVKGV 226
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ L G + A +L K+ + G+ P G+ AALY++ ++ G ++ +
Sbjct: 227 SRIAS--LAGLGEATKRKALILLNKAKKIGMVAGKDPMGIAAAALYLACISTGGNKTQKE 284
Query: 240 IVKIVHICEATLMKRLIEFE 259
I + E T+ R + +
Sbjct: 285 ISIASGVTEVTIRNRCVGLK 304
>gi|448450737|ref|ZP_21592470.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445811248|gb|EMA61256.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 317
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 186 RKEGIPRSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 240 -ELSEEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 298
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 299 EVTIRNRYQE 308
>gi|393796911|ref|ZP_10380275.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 303
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 94/195 (48%), Gaps = 9/195 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S +R + +A ++M ++K+ L + +D +V A Y A+ + +GR + +
Sbjct: 108 RSQAHSSADRNLRQALNEMDKLKDKLAL--TDAVVEKAAYIYRKAMEKKLVRGRSIQGLV 165
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY +CR P L D + +NI ++ Y + + L + + VDP +
Sbjct: 166 AACLYASCRNTETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 220
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + ++K A IL K+ + G+ P G+ AALY++ ++ G S+ D
Sbjct: 221 SRIAS--IAELSEKSKRKAVVILEQAKKIGMVAGKDPMGIAAAALYLACISTGEIKSQKD 278
Query: 240 IVKIVHICEATLMKR 254
I + E T+ R
Sbjct: 279 ISIASGVTEVTIRNR 293
>gi|148642484|ref|YP_001272997.1| transcription initiation factor IIB [Methanobrevibacter smithii
ATCC 35061]
gi|222446016|ref|ZP_03608531.1| hypothetical protein METSMIALI_01665 [Methanobrevibacter smithii
DSM 2375]
gi|261349445|ref|ZP_05974862.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
gi|189029858|sp|A5UKA1.1|TF2B_METS3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|148551501|gb|ABQ86629.1| transcription initiation factor TFIIB (zinc-binding)
[Methanobrevibacter smithii ATCC 35061]
gi|222435581|gb|EEE42746.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2375]
gi|288861808|gb|EFC94106.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
Length = 310
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 190
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+ E+G Y L + L I L P ++ +F L G + A +I
Sbjct: 191 VSRVTKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELGLSGEAQ--SRAIEI 243
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E
Sbjct: 244 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKEL 300
>gi|300712183|ref|YP_003737997.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|448295872|ref|ZP_21485935.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|299125866|gb|ADJ16205.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|445583301|gb|ELY37633.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
Length = 323
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 134 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATAALYAAC 191
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 192 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 246
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 247 L--SEEVQSKANEIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 304
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 305 EVTIRNRYQE 314
>gi|448609114|ref|ZP_21660393.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|448615057|ref|ZP_21664085.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445747491|gb|ELZ98947.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445753144|gb|EMA04563.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 316
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 186 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 240 -ELSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 298
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 299 EVTIRNRYQE 308
>gi|322369392|ref|ZP_08043957.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320551124|gb|EFW92773.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 287
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 98 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 155
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + +K VDP ++ +F L
Sbjct: 156 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSEL- 209
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 210 -ELSEEVQSKANNIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 268
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 269 EVTIRNRYQE 278
>gi|448425078|ref|ZP_21582707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448510576|ref|ZP_21615953.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448522305|ref|ZP_21618428.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445681338|gb|ELZ33772.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445695849|gb|ELZ47948.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702249|gb|ELZ54207.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 317
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 186 RKEGIPRSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 240 -ELSEEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 298
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 299 EVTIRNRYQE 308
>gi|397772845|ref|YP_006540391.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448337167|ref|ZP_21526249.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448340531|ref|ZP_21529502.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|448346310|ref|ZP_21535196.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|448400256|ref|ZP_21571323.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|397681938|gb|AFO56315.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445626513|gb|ELY79856.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629964|gb|ELY83234.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445632899|gb|ELY86105.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445667796|gb|ELZ20436.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 320
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|433590946|ref|YP_007280442.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334479|ref|ZP_21523654.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448385421|ref|ZP_21563927.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305726|gb|AGB31538.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445619811|gb|ELY73328.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445656916|gb|ELZ09748.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 320
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|429192472|ref|YP_007178150.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448325884|ref|ZP_21515262.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|429136690|gb|AFZ73701.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445613976|gb|ELY67661.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 320
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|448411716|ref|ZP_21576072.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669650|gb|ELZ22258.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 324
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ES + A Y A+ + GR E V S LY
Sbjct: 131 SKERNLKQALGEIDRMASALGLPES--VRETASVIYRRALDEDLLPGRSIEGVATSALYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 189 AARQAGTPRSLDEIAAVSRVGKDEIARTYRYVVRELSLE-----IQPADPESYVPRFVSD 243
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L LP +V AR +L + K + +G+ P GL AA+Y ++L K ++S++ ++
Sbjct: 244 LDLP---DEVERRARQLLGTAKEQGVHSGKSPVGLAAAAVYAASLLANEKVTQSEVSEVA 300
Query: 245 HICEATLMKRLIEF 258
+I E T+ R E
Sbjct: 301 NISEVTIRNRYHEL 314
>gi|284165857|ref|YP_003404136.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|336252199|ref|YP_004595306.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|448313767|ref|ZP_21503479.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|448350243|ref|ZP_21539062.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|448362255|ref|ZP_21550866.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|448369894|ref|ZP_21556347.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|448391654|ref|ZP_21566749.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
gi|284015512|gb|ADB61463.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|335336188|gb|AEH35427.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|445597077|gb|ELY51155.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445637750|gb|ELY90898.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|445648776|gb|ELZ01724.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|445650334|gb|ELZ03258.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|445665066|gb|ELZ17744.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
Length = 320
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|448322503|ref|ZP_21511973.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445601261|gb|ELY55250.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 310
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 121 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 178
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 179 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 233
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 234 L--SEEVQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 291
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 292 EVTIRNRYQE 301
>gi|397651191|ref|YP_006491772.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
COM1]
gi|393188782|gb|AFN03480.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
COM1]
Length = 273
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 18/253 (7%)
Query: 17 YDSQ---LCCDRCGKVLEDHNFSTE---ATFVKNAAGQSQLSGNFVR-----TIQSEYGA 65
YD Q + C +CG +L + +E T + ++ G F R + +
Sbjct: 17 YDRQHGEVFCKKCGSILATNLVDSELSRKTKTNDIPRYTKRIGEFTREKIYRLRKWQKKI 76
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S ER + A ++R++ L + + E A Y A R T+ E A+C+Y
Sbjct: 77 SSERNLVLAMSELRRLSGMLKLPKYVE--EEAAYLYREAAKRGLTRRIPIETTVAACIYA 134
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CR P L + ++Y E+ + + + L + + + + P+ ++ KF D
Sbjct: 135 TCRLFKVPRTLNEIASYSKTEKKEIMKAFRVIVRNLNLTPKMLLAR---PTDYVDKFADE 191
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++V DIL + IT+G+ P L AALY+++L G + S+ +I ++
Sbjct: 192 L--ELSERVRRRTVDILRRANEEGITSGKNPLSLVAAALYIASLLEGERRSQKEIARVTG 249
Query: 246 ICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 250 VSEMTVRNRYKEL 262
>gi|289579995|ref|YP_003478461.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281233|ref|ZP_21472540.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448352650|ref|ZP_21541431.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448358870|ref|ZP_21547544.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|289529548|gb|ADD03899.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445579163|gb|ELY33559.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|445641929|gb|ELY95000.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445644550|gb|ELY97563.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 320
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|448317588|ref|ZP_21507138.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445602979|gb|ELY56949.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 310
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 121 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 178
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 179 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 233
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 234 L--SEEVQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 291
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 292 EVTIRNRYQE 301
>gi|448411918|ref|ZP_21576274.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669852|gb|ELZ22460.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 326
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 19/239 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGN------FVRTIQSEYGA--SRERLMEKAFDDMRQ 80
++ D ST + A + LS N +RT + S+ER +++A ++ +
Sbjct: 90 MMHDKGLSTNIGWQNKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 149
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL + ++ + A Y A+ N GR E V + LY A RQ + P L + +
Sbjct: 150 MASALGLPKT--VRETASVIYRRALEENLLPGRSIEGVATASLYAAARQANTPRSLDEMT 207
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
+ EL Y Y+ E N+ +K DP +L +F L + + AR
Sbjct: 208 AVSRVEKMELTRTYR------YVVRELNLEIKPADPESYLPRFVSDLELSDDTE--RRAR 259
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+++ S + I +G+ P GL AA+Y +AL K ++S++ + +I E T+ R E
Sbjct: 260 ELIVSARDQGILSGKSPVGLAAAAVYAAALLTNEKVTQSEVSDVANISEVTIRNRYKEL 318
>gi|448330825|ref|ZP_21520101.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610661|gb|ELY64430.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 320
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|448306239|ref|ZP_21496148.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445598653|gb|ELY52708.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 320
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|435848097|ref|YP_007310347.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674365|gb|AGB38557.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 320
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|448482042|ref|ZP_21605256.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821444|gb|EMA71235.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 128 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 186 RKEGIPRSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 239
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 240 -ELSEEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 298
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 299 EVTIRNRYQE 308
>gi|448629133|ref|ZP_21672532.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445757699|gb|EMA09040.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 324
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 95/193 (49%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASD 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++V AR +L + K++ + +G+ P GL AA+Y ++L K ++S + ++ +
Sbjct: 245 L--DLSEEVERRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSQVSEVAN 302
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 303 ISEVTIRNRYHEL 315
>gi|448445090|ref|ZP_21590145.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685396|gb|ELZ37750.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 348
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 93/184 (50%), Gaps = 9/184 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 130 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 187
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S+ ++ E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 188 RKEGIPRSLEEISDVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 241
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 242 -ELSEEVQSKANEIIETTADQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 300
Query: 248 EATL 251
E T+
Sbjct: 301 EVTI 304
>gi|435846710|ref|YP_007308960.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672978|gb|AGB37170.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 12/202 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 190 AARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 244
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S + + + +G+ P GL AA+Y +AL K +++D+ ++
Sbjct: 245 LDLSDETERM---ARELLDSAREEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVA 301
Query: 245 HICEATLMKRLIE-FENTDSGS 265
I E T+ R E E +DS +
Sbjct: 302 SISEVTIRNRYKELLEASDSAA 323
>gi|55378144|ref|YP_135994.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448636768|ref|ZP_21675216.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448648512|ref|ZP_21679643.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448685471|ref|ZP_21693463.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55230869|gb|AAV46288.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445765074|gb|EMA16213.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445775613|gb|EMA26623.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782082|gb|EMA32933.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 324
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 95/193 (49%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASD 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++V AR +L + K++ + +G+ P GL AA+Y ++L K ++S + ++ +
Sbjct: 245 L--DLSEEVERRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSQVSEVAN 302
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 303 ISEVTIRNRYHEL 315
>gi|448571794|ref|ZP_21639968.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445721761|gb|ELZ73427.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 318
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 125 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 182
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 183 AARMAGTPRSLDEITSVSRVEKDEIARTYRYVVRELSLE-----IKPADPEQYVPRFASE 237
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +
Sbjct: 238 L--GLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVAN 295
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 296 ISEVTIRNRYHEL 308
>gi|345007304|ref|YP_004810156.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322930|gb|AEN07783.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 308
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 101/240 (42%), Gaps = 20/240 (8%)
Query: 23 CDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKA---- 74
C R G L D STE +A G S R + SR R KA
Sbjct: 66 CKRTGAPLTAARHDRGLSTEIGRRTDANGNELSSQKQRRLWRLRREQSRGRFQSKAERNL 125
Query: 75 ---FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 131
++R++ +AL + E+ + A R + A +F +GR E + A+ +Y ACR
Sbjct: 126 AHGLGEVRRISSALELSET--LRDQACRLFRSAQNEDFLRGRSIEAMAAASIYGACRCNG 183
Query: 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 191
+P L + ++ + + Y L L + + V PS F+ + L +
Sbjct: 184 RPRTLNEVTDSARVEDSRITNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DVS 236
Query: 192 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
++ AR + + + TTG +PSG A LY + G + ++SD+ ++ ++ T+
Sbjct: 237 DQLRQRARRLAEASEATGATTGVRPSGFAAACLYKAGREQGRRLTQSDVAEVANVSPVTV 296
>gi|288931755|ref|YP_003435815.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288894003|gb|ADC65540.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 328
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 98/192 (51%), Gaps = 11/192 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + +S + A Y AV +N +GR E V A+ LY AC
Sbjct: 137 ERNLAFALSELDRMASALGLPKS--VRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAAC 194
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ P L + + Y ++ E+G Y +IA E + L P+ ++ +F L
Sbjct: 195 RQAGVPRTLDEIATYSRVDRKEIGRTY------RFIARELGLKLLPTSPADYVPRFCAAL 248
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G + +V A +I+ + +T+GR P+G+ AA+Y++++ G + ++ ++ ++ +
Sbjct: 249 --GLSGEVQKKAIEIIKKAEEKELTSGRGPTGVAAAAIYIASILTGERRTQREVAEVAGV 306
Query: 247 CEATLMKRLIEF 258
E T+ R E
Sbjct: 307 TEVTIRNRYKEL 318
>gi|193083921|gb|ACF09599.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote KM3-34-D9]
Length = 307
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 9/200 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S ER + +A +M ++K+ L + +D ++ A Y A+ R KGR +
Sbjct: 114 RSQAHSSSERNLRQALSEMDKLKDKLTL--TDTVIEKAAYIYRKAIERKLVKGRSIHGLV 171
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+C+Y +CR P L D + +NI ++ Y + + L + + DP +
Sbjct: 172 AACIYASCRMTETPRTLDDIAEGINIKRKDVARSYRIIFRELDLK-----IPVADPVKGV 226
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ L G + A +L K+ + G+ P G+ AALY++ ++ G ++ +
Sbjct: 227 SRIAS--LAGLGEATKRKALILLNKAKKIGMVAGKDPMGIAAAALYLACISTGGSKTQKE 284
Query: 240 IVKIVHICEATLMKRLIEFE 259
I + E T+ R + +
Sbjct: 285 ISIASGVTEVTIRNRCVGLK 304
>gi|433591402|ref|YP_007280898.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332920|ref|ZP_21522140.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433306182|gb|AGB31994.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445624764|gb|ELY78139.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 324
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
+RER +++A ++ +M +AL + E A Y AV GR E + +CLY
Sbjct: 131 ARERNLKQALGEIERMASALGLPEP--CRETAGVIYRRAVEEELLPGRSIEAMATACLYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ+ P L+ F++ + + Y L L + ++ DP +L ++
Sbjct: 189 AARQQGTPRTLVAFASVSRVEKLPIQRAYRYLSSELGLK-----IEPADPIHYLPQYASE 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + AR IL + K + +GR P+GL AA+Y + ++ I +
Sbjct: 244 L--GVGDETERLARKILEAAKDRDLHSGRSPAGLAAAAIYGAGRLTDEGLTQERIGEETG 301
Query: 246 ICEATLMKRLIEF 258
+ T+ R E
Sbjct: 302 VSGVTVRNRYREL 314
>gi|327401743|ref|YP_004342582.1| transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
gi|327317251|gb|AEA47867.1| Transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
Length = 329
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 11/192 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + +S + A Y AV +N +GR E V A+ LY AC
Sbjct: 138 ERNLAFALSELDRMASALGLPKS--VRETAAVIYRKAVDKNLIRGRSIEGVVAAALYAAC 195
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ P L + + Y ++ E+G Y +IA E + L P+ ++ +F L
Sbjct: 196 RQAGVPRTLDEIATYSRVDRKEIGRTY------RFIARELGLKLMPTSPADYVPRFCAAL 249
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G+ V A +I+ + +T+GR P+G+ AA+Y++++ G + ++ ++ ++ +
Sbjct: 250 GLSGD--VQKKAIEIIKKAEEKELTSGRGPTGVAAAAIYIASILGGERRTQREVAEVAGV 307
Query: 247 CEATLMKRLIEF 258
E T+ R E
Sbjct: 308 TEVTIRNRYKEL 319
>gi|448345333|ref|ZP_21534230.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445635331|gb|ELY88501.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 329
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 9/200 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRER +++A ++ +M +AL G D + A Y A+ GR E V S LY
Sbjct: 137 SRERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALEDELLPGRSIEGVATSSLYA 194
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ E+ Y + + L + ++ DP ++ +F
Sbjct: 195 AARQAGTPRSLDEISAVSRVDKAEVARTYRYVVRELGLE-----VQPADPVSYVPRFASD 249
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L ++ ARD+L + K I +G+ P GL AA+Y +AL + +++D+ ++
Sbjct: 250 LDLSDETEL--RARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSEVAS 307
Query: 246 ICEATLMKRLIEFENTDSGS 265
I E T+ R E + G+
Sbjct: 308 ISEVTIRNRYHELLEAEDGA 327
>gi|433639225|ref|YP_007284985.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377483|ref|ZP_21560179.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
gi|433291029|gb|AGB16852.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655427|gb|ELZ08272.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
Length = 320
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|448302993|ref|ZP_21492943.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594000|gb|ELY48167.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 310
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 121 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 178
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 179 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 233
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 234 L--SEEVQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 291
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 292 EVTIRNRYQE 301
>gi|407465789|ref|YP_006776671.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048977|gb|AFS83729.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 14/238 (5%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSG-----NFVRTIQSEYGASRERLMEKAFDDMRQMKN 83
+ D ST K++ G++ S N +RT + + + KAF + MK
Sbjct: 73 TMNDRGLSTVIGTNKDSTGKALSSKTKYEFNRLRTWDQRSKSRKTASLSKAFTLLHGMKT 132
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
L I SD +V A Y V+ T+GR + ++ LY ACR+ + P L D ++
Sbjct: 133 KLGI--SDNVVENAAYIYRKVVSAKLTRGRTMASLISASLYAACRENNIPRTLDDIADAG 190
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
N+ L + + L + L Q D + F+ K ++ + +K A +IL
Sbjct: 191 NVERRILSRDLRTIIKKLGMN-----LNQYDTTSFISKISNNM--NLKEKTKRDAFEILR 243
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261
+++ IT G+ P A+LY+S + +G K S+ + + T+ R I + T
Sbjct: 244 RCEKEQITAGKHPVAQAAASLYISCIMNGEKISQKKFSVESGVSDVTIRNRTILIKKT 301
>gi|386874734|ref|ZP_10116960.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807357|gb|EIJ66750.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 306
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 14/232 (6%)
Query: 29 VLEDHNFSTEATFVKNAAG-----QSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKN 83
+ D ST K+++G +++ N +RT + + + KAF + MK
Sbjct: 73 TMYDKGLSTVIGTNKDSSGNALSNKTKYEFNRLRTWDQRSKSRKTAALSKAFTLLHGMKT 132
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
L G D +V A Y V+ T+GR + ++ LY ACR+ + P L D +N
Sbjct: 133 KL--GVPDNVVESAAYIYRKVVSAKLTRGRTMTSLISASLYAACRENNIPRTLDDIANAG 190
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
N+ L + + L + L Q D S F+ K ++ + +K A +IL
Sbjct: 191 NVERRILSRDLRTIIKKLGLN-----LNQYDTSSFISKISNNM--DLKEKTKRDAFEILK 243
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 255
+++ IT G+ P A+LY+S + +G K S+ + + T+ R+
Sbjct: 244 RCEKEQITAGKHPVAQAAASLYISCIMNGEKISQKKFSAESGVSDVTIRNRV 295
>gi|448473771|ref|ZP_21601913.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819283|gb|EMA69132.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 353
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V + LY
Sbjct: 160 SKERNLKQALGEVDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYA 217
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 218 AARQAGTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 272
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +
Sbjct: 273 L--GLSDEAERRARSLLDTAKAQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVAN 330
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 331 ISEVTIRNRYHEL 343
>gi|399574686|ref|ZP_10768445.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240518|gb|EJN61443.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 317
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 241 -ELSEEVQAKAVEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 299
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 300 EVTIRNRYQE 309
>gi|448561557|ref|ZP_21634841.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445720739|gb|ELZ72411.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 318
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 125 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 182
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 183 AARMADTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASE 237
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +
Sbjct: 238 L--GLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVAN 295
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 296 ISEVTIRNRYHEL 308
>gi|407465001|ref|YP_006775883.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048189|gb|AFS82941.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 303
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 93/195 (47%), Gaps = 9/195 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S +R + +A ++M ++K+ L + +D ++ A Y A+ + +GR + +
Sbjct: 108 RSQAHSSADRNLRQALNEMDKLKDKLAL--TDAVIEKAAYIYRKAMEKKLVRGRSIQGLV 165
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY +CR P L D + +NI ++ Y + + L + + VDP +
Sbjct: 166 AACLYASCRNTETPRTLDDIAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 220
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + ++K A IL K + G+ P G+ AALY++ ++ G S+ D
Sbjct: 221 SRIAS--IAELSEKSKRKAIAILNQAKEIGMVAGKDPMGIAAAALYLACISTGEVKSQKD 278
Query: 240 IVKIVHICEATLMKR 254
I + E T+ R
Sbjct: 279 ISIASGVTEVTIRNR 293
>gi|448431679|ref|ZP_21585190.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445687455|gb|ELZ39738.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 238
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 12/199 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 45 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYA 102
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 103 AARQAGTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 157
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +
Sbjct: 158 L--GLSDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVAN 215
Query: 246 ICEATLMKR---LIEFENT 261
I E T+ R L+E E++
Sbjct: 216 ISEVTIRNRYHELLEAEDS 234
>gi|399578968|ref|ZP_10772712.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
gi|399235994|gb|EJN56934.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
Length = 318
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 104/258 (40%), Gaps = 22/258 (8%)
Query: 23 CDRCGKVL----EDHNFSTEA---TFVKNAAGQSQLSGNFVRTIQSEYGASR-----ERL 70
C+R G L D STE T +N A SQ R ++ E+ R ER
Sbjct: 68 CERTGAPLTAARHDRGLSTEIGCRTDARNNALSSQKRRQLAR-MRREHSRGRFQSKAERN 126
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
+ ++R++ +AL G +D I A + + A N GR E + A+ +Y CR
Sbjct: 127 LAHGLGEVRRITSAL--GLADSIREQACQLFRSAQRENLLLGRSIEAIAAASVYGVCRCH 184
Query: 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 190
+P D + ++ + Y L + L + + V P + K L
Sbjct: 185 GRPITRDDLVDVARVDHSGVTNAYKTLNRELGLPTQP-----VAPQSLIPKLASEL--DV 237
Query: 191 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 250
K+V AR + IT G +PSG+ A LY+++ HG +++ + + AT
Sbjct: 238 EKRVRRRARTLAERAHETSITNGYQPSGVAAACLYLASREHGESLTQTQVAEAAGTTSAT 297
Query: 251 LMKRLIEFENTDSGSLTI 268
L R E G + +
Sbjct: 298 LRARRAELTELIDGEVRV 315
>gi|448423775|ref|ZP_21582108.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445683032|gb|ELZ35437.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
Length = 396
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 100/214 (46%), Gaps = 12/214 (5%)
Query: 51 LSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFT 110
L N T Y + ER +++A ++ +M +AL G D + A Y A+ +
Sbjct: 188 LPDNVRETASVIYRRALERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLL 245
Query: 111 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170
GR E V + LY A RQ P L + + + E+ Y + + L + +
Sbjct: 246 PGRSIEGVSTASLYAAARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----I 300
Query: 171 KQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 230
+ DP ++ +F L G + + AR +L + K I +G+ P GL AA+Y ++L
Sbjct: 301 QPADPESYVPRFASDL--GLSDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLL 358
Query: 231 HGLKFSKSDIVKIVHICEATLMKR---LIEFENT 261
K ++S++ ++ +I E T+ R L+E E++
Sbjct: 359 VNEKVTQSEVSEVANISEVTIRNRYHELLEAEDS 392
>gi|448439550|ref|ZP_21588114.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691084|gb|ELZ43279.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 346
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY AC
Sbjct: 129 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + ++ + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 187 RQEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASSL- 240
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 241 -ELSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 299
Query: 248 EATL 251
E T+
Sbjct: 300 EVTI 303
>gi|448586312|ref|ZP_21648386.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445724967|gb|ELZ76593.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 318
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 125 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 182
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 183 AARMADTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASE 237
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +
Sbjct: 238 L--GLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVAN 295
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 296 ISEVTIRNRYHEL 308
>gi|386875622|ref|ZP_10117781.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806378|gb|EIJ65838.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 303
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 93/195 (47%), Gaps = 9/195 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+++ +S +R + +A ++M ++K+ L + +D +V A Y A+ + +GR + +
Sbjct: 108 RTQAHSSADRNLRQALNEMDKLKDKLAL--TDSVVEKAAYIYRKAMEKKLVRGRSIQGLV 165
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+CLY +CR P L D + +NI ++ Y + + L + + VDP +
Sbjct: 166 AACLYASCRNTETPRTLDDIAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGV 220
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ + ++K A IL K + G+ P G+ AALY++ ++ G S+ D
Sbjct: 221 SRIAS--IAELSEKSKRKAIVILNQAKEIGMVAGKDPMGIAAAALYLACISTGETKSQKD 278
Query: 240 IVKIVHICEATLMKR 254
I + E T+ R
Sbjct: 279 ISIASGVTEVTIRNR 293
>gi|261402160|ref|YP_003246384.1| Transcription factor TFIIB cyclin-releated protein
[Methanocaldococcus vulcanius M7]
gi|261369153|gb|ACX71902.1| Transcription factor TFIIB cyclin-releated protein
[Methanocaldococcus vulcanius M7]
Length = 666
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 505 IYRNAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYR---- 560
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 561 --FLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQATEKGLTSGRGPT 615
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 616 GVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 656
>gi|448292233|ref|ZP_21482893.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448541523|ref|ZP_21624239.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549791|ref|ZP_21628396.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555098|ref|ZP_21631138.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445573033|gb|ELY27560.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445707848|gb|ELZ59696.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712839|gb|ELZ64620.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717843|gb|ELZ69546.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 318
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 125 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 182
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 183 AARMAGTPRSLDEITSVSRVEKDEIARTYRYVVRELSLE-----IKPADPEQYVPRFASD 237
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +
Sbjct: 238 L--GLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVAN 295
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 296 ISEVTIRNRYHEL 308
>gi|448288563|ref|ZP_21479761.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445568948|gb|ELY23523.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 318
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
++ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 126 AKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSALYA 183
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A RQ P L + ++ E+ Y Y+ E N+ ++ DP ++ +F
Sbjct: 184 AARQAGTPRSLDELETVSRVDKDEISRTYR------YVVRELNLEIEPADPEQYVPRFAS 237
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G N + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++
Sbjct: 238 EL--GLNDESERHARQLLRTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSEVSEVA 295
Query: 245 HICEATLMKRLIEF 258
+I E T+ R E
Sbjct: 296 NISEVTIRNRYHEL 309
>gi|408403989|ref|YP_006861972.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364585|gb|AFU58315.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 285
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 17/233 (7%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
+ D +T V A LS + TI+ S+ +R +AF ++ ++
Sbjct: 52 MHDMGLATIIGPVDKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRL 111
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
K+ L +G D ++ A Y A+ + +GR + A+ LY ACR P L D +N
Sbjct: 112 KDKLAVG--DAVIEKAAYVYRKALEKGLVRGRSISALVAAALYAACRDTETPRTLKDIAN 169
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
NI ++ Y L + L + + VDP + + + G ++K A +I
Sbjct: 170 ASNIKKKDVARCYRLLIRELDLK-----MPVVDPVKCVARIASK--AGLSEKTKRKALEI 222
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
L + I+ G+ P GL AALYV+ + +G ++ D+ + + E T+ R
Sbjct: 223 LKKAEEGKISAGKDPMGLAAAALYVACVMNGENKTQKDVAEAAGVTEVTIRNR 275
>gi|170091576|ref|XP_001877010.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648503|gb|EDR12746.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 349
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 13/223 (5%)
Query: 40 TFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
T + G S ++ R + ER + AF D+ + ++ ++ I +AK+
Sbjct: 101 TVISFRDGGSGIARELQRAASRSQNSRSERNIMTAFRDIGSWCDQFSLPKT--ISDIAKQ 158
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y + +G+ E V A+C+++ACRQ P + + +++ LG Y L Q
Sbjct: 159 LYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICDLTHVSKKILGQCYKALEQ 218
Query: 160 VLYIADESNVLKQVD-----PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTG 213
+ ++ + P L ++ + L LP + +C DI+ + ++ I G
Sbjct: 219 AFNLTPGASAAHASNNPATGPENLLVRYCNHLDLPPNVQSICS---DIIVAARKHGIADG 275
Query: 214 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256
R P + G A+Y + G S DI + + E T+ RL+
Sbjct: 276 RSPVSIAGGAIYFTCYLLGKNKSPRDISAVAGVSEGTI--RLV 316
>gi|147919688|ref|YP_686567.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
gi|110621963|emb|CAJ37241.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
Length = 337
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 17/195 (8%)
Query: 68 ERLMEKAFDDMRQMKNAL----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
ER + A ++ +M +AL NI E+ +V Y AV++N +GR E V A+ L
Sbjct: 146 ERNLAFALSELDRMASALGLPRNIRETSAVV------YRKAVSKNLIRGRSIEGVAAAAL 199
Query: 124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
Y ACRQ P L + + ++ E+G Y + + L + L P ++ +F
Sbjct: 200 YAACRQNGVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LMPTSPIDYVPRFC 254
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
L G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ +
Sbjct: 255 SGLSLKG--EVQSKAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANV 312
Query: 244 VHICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 313 AGVTEVTIRNRYKEL 327
>gi|383621854|ref|ZP_09948260.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448702704|ref|ZP_21700137.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445777265|gb|EMA28235.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 320
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 L--SEEVQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|224053717|ref|XP_002297944.1| predicted protein [Populus trichocarpa]
gi|118481931|gb|ABK92899.1| unknown [Populus trichocarpa]
gi|222845202|gb|EEE82749.1| predicted protein [Populus trichocarpa]
Length = 230
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 47/139 (33%)
Query: 406 TTEASDGSDNFSDIDDFEVDGYL-HNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKA 464
+T A++ S++ SDIDD E+ GYL HNE+E +K+ +WE MN++YL
Sbjct: 59 STAAANDSEDLSDIDDAEIAGYLLHNEKEMEFKRTLWEMMNKKYL--------------- 103
Query: 465 ALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLT 524
K Q K A + K P++ A++ +
Sbjct: 104 -------------------------------KGNQLKGARKVKKRTPSKKAIKIAGQTEN 132
Query: 525 KKRLSSKINYDVLEKLFDD 543
K R SSKINYDVL+KL DD
Sbjct: 133 KTRSSSKINYDVLKKLLDD 151
>gi|292655211|ref|YP_003535108.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448596702|ref|ZP_21653840.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371352|gb|ADE03579.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445740583|gb|ELZ92088.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 139 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 196
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 197 AARMAGTPRSLDEITSVSRVEKDEIARTYRYVVRELSLE-----IKPADPEQYVPRFASD 251
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +
Sbjct: 252 L--GLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVAN 309
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 310 ISEVTIRNRYHEL 322
>gi|313126970|ref|YP_004037240.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293335|gb|ADQ67795.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
++ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 135 AKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSALYA 192
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A RQ P L + ++ E+ Y Y+ E N+ ++ DP ++ +F
Sbjct: 193 AARQAGTPRSLDELETVSRVDKDEISRTYR------YVVRELNLEIEPADPEQYVPRFAS 246
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G N + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++
Sbjct: 247 EL--GLNDESERHARQLLRTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSEVSEVA 304
Query: 245 HICEATLMKRLIEF 258
+I E T+ R E
Sbjct: 305 NISEVTIRNRYHEL 318
>gi|448602605|ref|ZP_21656540.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625071|ref|ZP_21670838.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445746957|gb|ELZ98414.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445748833|gb|EMA00279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 318
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 125 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 182
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 183 AARMADTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASD 237
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +
Sbjct: 238 L--GLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVAN 295
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 296 ISEVTIRNRYHEL 308
>gi|448298665|ref|ZP_21488693.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445591335|gb|ELY45541.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 320
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 131 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAAC 188
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 189 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELE 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 244 L--SEEVQTKANEIIEKTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 301
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 302 EVTIRNRYQE 311
>gi|383625175|ref|ZP_09949581.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 329
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 11/201 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 137 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 194
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TD 184
A RQ P L + S + E+ Y + + L + ++ DP ++ +F +D
Sbjct: 195 AARQAGTPRSLDEISAVSRVEKDEIARTYRYVVRELGLE-----VQPADPESYVPRFASD 249
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
LP ++ AR +L + K + I +G+ P GL AA+Y +AL K +++D+ ++
Sbjct: 250 LELPDETER---RARRLLKTAKDEGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVA 306
Query: 245 HICEATLMKRLIEFENTDSGS 265
I E T+ R E + G+
Sbjct: 307 SISEVTIRNRYHELLEAEEGA 327
>gi|424813973|ref|ZP_18239151.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
gi|339757589|gb|EGQ42846.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
Length = 360
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 131/314 (41%), Gaps = 54/314 (17%)
Query: 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEA--------------------T 40
++ CS C +L C CG V+++ A T
Sbjct: 60 VLTCSECGGQQFEEDSSKGELICISCGTVIDEDRIDKSAEYRAFNAEEKEKKARAGQPLT 119
Query: 41 FVKNAAGQS-----------QLSGN------FVRTIQSEYGASRERLMEKAFDDMRQMKN 83
+ K+ G S ++SGN +R S++R + A ++ M +
Sbjct: 120 YTKHDMGVSTEIGKGSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMIS 179
Query: 84 ALNIGESDEIVHV-AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
LN+ ES VH R Y +V + +GR E + ++ +Y+ R++ P L + S+
Sbjct: 180 NLNLPES---VHEETARLYEKSVDQGLVRGRSMESIISAIIYIVARKQGTPRTLDEISDA 236
Query: 143 LNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
I E+G Y Y+A E + + P ++ +F +L G +V AR I
Sbjct: 237 SGIEKREIGRAYR------YVARELGLRILPAKPQDYVPRFAGKLQLSG--EVQARARQI 288
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261
L + + +G+ P+GL AALY++A+ G K ++ ++ +V + E T+ R E
Sbjct: 289 LKEARERDLLSGKGPTGLAAAALYIAAVLEGEKRTQREVADVVGVTEVTIRNRYKEL--- 345
Query: 262 DSGSLTIEDFMARK 275
+ L +ED + K
Sbjct: 346 -AEKLGLEDELEEK 358
>gi|448491685|ref|ZP_21608525.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445692685|gb|ELZ44856.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 209
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 12/199 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V + LY
Sbjct: 16 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYA 73
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 74 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 128
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +
Sbjct: 129 L--GLSDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVAN 186
Query: 246 ICEATLMKR---LIEFENT 261
I E T+ R L+E E++
Sbjct: 187 ISEVTIRNRYHELLEAEDS 205
>gi|313126285|ref|YP_004036555.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448286126|ref|ZP_21477361.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292650|gb|ADQ67110.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445575177|gb|ELY29656.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 330
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 9/201 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 137 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSALYA 194
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + ++ EL Y + + L + ++ DP ++ +F
Sbjct: 195 AARQAGTPRSLDELETVSRVDKMELTRTYRYVVRELKLE-----IEPADPEQYVPRFASE 249
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L + + ARD+L + K+ I +G+ P GL AA+Y +AL K ++S++ ++
Sbjct: 250 L--DLSDEAERQARDLLRNAKKAGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSEVAS 307
Query: 246 ICEATLMKRLIEFENTDSGSL 266
I E T+ R E D L
Sbjct: 308 ISEVTIRNRYKELLEVDDAGL 328
>gi|260945447|ref|XP_002617021.1| hypothetical protein CLUG_02465 [Clavispora lusitaniae ATCC 42720]
gi|238848875|gb|EEQ38339.1| hypothetical protein CLUG_02465 [Clavispora lusitaniae ATCC 42720]
Length = 217
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 205 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSG 264
M DWI GR+P+G+ GA + ++A + + + ++IV + + E T+ KRL EF+NT S
Sbjct: 1 MSSDWIHEGRRPAGIAGACVLLAARMNHINRTHAEIVAVARVGEETIQKRLNEFKNTTSA 60
Query: 265 SLTIEDF 271
+LTI +F
Sbjct: 61 NLTISEF 67
>gi|448300614|ref|ZP_21490613.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445585433|gb|ELY39728.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 323
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ RQ S P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 188 SARQASTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEQYVPRFVSD 242
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL AA+Y +AL K +++D+ ++
Sbjct: 243 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVA 299
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 300 SISEVTIRNRYKEL 313
>gi|449500687|ref|XP_004161168.1| PREDICTED: uncharacterized protein LOC101224631 [Cucumis sativus]
Length = 111
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 26/107 (24%)
Query: 414 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 473
++ D+ D EV+ YL+N +E HYKKIIWE++N++YL++QAAK+
Sbjct: 27 EDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKK----------------- 69
Query: 474 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 520
Q L A+AV K K++Q R EA + PAQ TR
Sbjct: 70 -------QGLNVVGASAVVKKSKKRQ--RKTEAPINMPAQADTGTTR 107
>gi|448666488|ref|ZP_21685133.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445771619|gb|EMA22675.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 322
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 91/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + A Y A+ + GR E V S LY
Sbjct: 131 SKERNLKQALGEIDRMASALGLPQN--VRETASVIYRRALGDDLLPGRSIEGVATSALYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + + + EL Y + + L + ++ DP +L +F
Sbjct: 189 AARMAGNPRSLDEMARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISD 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G +++ ARD++ ++ + +G+ P G+ AA+Y +AL K ++S + +
Sbjct: 244 L--GLSEETQRQARDLIEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVAD 301
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 302 ISEVTIRNRYKEL 314
>gi|242399568|ref|YP_002994993.1| Transcription initiation factor IIB 2 [Thermococcus sibiricus MM
739]
gi|242265962|gb|ACS90644.1| Transcription initiation factor IIB 2 [Thermococcus sibiricus MM
739]
Length = 272
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 7/172 (4%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
IG I +A Y AV +GR E + ++CLY ACR + P L + ++ ++
Sbjct: 98 IGLPRNIREIAALLYRKAVINRLVRGRSIEGMVSACLYAACRIANAPRTLDEIEDFSKVD 157
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G Y L + L + L+ +P ++ +F D+L G +K A I+
Sbjct: 158 KKEIGRSYRYLVRELNLK-----LRPTNPVDYVVRFGDQL--GVTEKTKRRAMRIVNQAI 210
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ +T+G+ P+G+ AA+Y+++L G K ++ ++ ++ + E T+ R E
Sbjct: 211 KMGLTSGKGPTGIAAAAIYIASLLEGEKMTQREVAEVARVTEVTVRNRYKEL 262
>gi|448304716|ref|ZP_21494652.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590097|gb|ELY44318.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 321
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALSEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + S ++ E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEVSAVSRVDRMEIGRTYRYISQELSLE-----MEPVDPKKYVPRFCSEL- 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + +
Sbjct: 244 -DLSEEVQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVT 302
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 303 EVTIRNRYQE 312
>gi|389846997|ref|YP_006349236.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244303|gb|AFK19249.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 276
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 88 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 145
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 146 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 199
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 200 -ELSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 258
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 259 EVTIRNRYQE 268
>gi|448391802|ref|ZP_21566897.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445665214|gb|ELZ17892.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 323
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 188 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 242
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL AA+Y +AL K +++D+ ++
Sbjct: 243 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVA 299
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 300 SISEVTIRNRYKEL 313
>gi|379003108|ref|YP_005258780.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Pyrobaculum oguniense TE7]
gi|375158561|gb|AFA38173.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Pyrobaculum oguniense TE7]
Length = 348
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 15/201 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++K+++ G V A Y A+ + +GR E +
Sbjct: 151 VQTSY----ERNFIQAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 204
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 205 AAAALYMACRMMRMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVL 258
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V A DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 259 YISRIAEQLKLSG--EVVKAAIDILQRAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 316
Query: 238 SDIVKIVHICEATLMKRLIEF 258
D + E T+ R E
Sbjct: 317 KDFAVAAGVTEVTVRNRYKEL 337
>gi|385803088|ref|YP_005839488.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728580|emb|CCC39735.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ GR E V + LY
Sbjct: 153 SKERNLKQALGEVDRMASALGLPEN--VRETASVIYRRALDEELLPGRSIEGVATASLYA 210
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + +N + E+ Y + + L + +K DP ++ +F
Sbjct: 211 AARQAGTPRSLDEITNVSRVGRDEIARTYRYVVRELKLQ-----IKPADPEQYVPRFASD 265
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L + + AR +L S K + +G+ P GL AA+Y ++L K ++ ++ + +
Sbjct: 266 L--DLSDEAERRARQLLRSAKEQGVHSGKSPVGLAAAAVYAASLLINEKVTQKEVSSVAN 323
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 324 ISEVTIRNRYHEL 336
>gi|145592173|ref|YP_001154175.1| transcription initiation factor IIB [Pyrobaculum arsenaticum DSM
13514]
gi|189029859|sp|A4WMA6.1|TF2B_PYRAR RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|145283941|gb|ABP51523.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum
arsenaticum DSM 13514]
Length = 333
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 15/201 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++K+++ G V A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 190 AAAALYMACRMMRMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V A DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKAAIDILQRAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 301
Query: 238 SDIVKIVHICEATLMKRLIEF 258
D + E T+ R E
Sbjct: 302 KDFAVAAGVTEVTVRNRYKEL 322
>gi|110667646|ref|YP_657457.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109625393|emb|CAJ51817.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ GR E V + LY
Sbjct: 153 SKERNLKQALGEVDRMASALGLPEN--VRETASVIYRRALDEELLPGRSIEGVATASLYA 210
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + +N + E+ Y + + L + +K DP ++ +F
Sbjct: 211 AARQAGTPRSLDEITNVSRVGRDEIARTYRYVVRELKLQ-----IKPADPEQYVPRFASD 265
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L + + AR +L S K + +G+ P GL AA+Y ++L K ++ ++ + +
Sbjct: 266 L--DLSDEAERRARQLLRSAKEQGVHSGKSPVGLAAAAVYAASLLINEKVTQKEVSSVAN 323
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 324 ISEVTIRNRYHEL 336
>gi|119873155|ref|YP_931162.1| transcription initiation factor IIB [Pyrobaculum islandicum DSM
4184]
gi|189029860|sp|A1RV37.1|TF2B_PYRIL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|119674563|gb|ABL88819.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum islandicum
DSM 4184]
Length = 333
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 15/204 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++++++ G V A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLRSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 190 AAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V TA +IL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVVKTAIEILQKAKKAGITAGKDPAGLAAAAVYIASLLHGDNRTQ 301
Query: 238 SDIVKIVHICEATLMKRLIEFENT 261
D + E T+ R E T
Sbjct: 302 KDFAVAAGVTEVTVRNRYKELAKT 325
>gi|15668963|ref|NP_247767.1| transcription initiation factor IIB [Methanocaldococcus jannaschii
DSM 2661]
gi|2833587|sp|Q58192.1|TF2B_METJA RecName: Full=Transcription initiation factor IIB; Short=TFIIB;
Contains: RecName: Full=Endonuclease Mja Tfb; AltName:
Full=Mja TFIIB intein; AltName: Full=Mja Tfb intein
gi|1591481|gb|AAB98771.1| transcription initiation factor IIB (TFIIB) [Methanocaldococcus
jannaschii DSM 2661]
Length = 673
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 512 IYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYR---- 567
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 568 --FLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPT 622
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 623 GVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 663
>gi|448575069|ref|ZP_21641592.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445732748|gb|ELZ84330.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 315
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 93/193 (48%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 122 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSSLYA 179
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 180 AARMADTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASE 234
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +
Sbjct: 235 L--GLSDEPERRARQLLKNAKEQSVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVAN 292
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 293 ISEVTIRNRYHEL 305
>gi|407463400|ref|YP_006774717.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407047022|gb|AFS81775.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 306
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 9/208 (4%)
Query: 54 NFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGR 113
N +RT + + + KAF + MK L I D +V A Y V+ T+GR
Sbjct: 103 NRLRTWDQRSKSRKTATLSKAFTLLHSMKTKLGI--PDNVVENAAYIYRKIVSAKLTRGR 160
Query: 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
+ ++ LY +CR+ + P L D +N N+ L + + L + L Q
Sbjct: 161 TMASLISASLYASCRENNIPRTLDDIANAGNVERRILSRDLRTIIKKLGLN-----LNQY 215
Query: 174 DPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 233
D S F+ K ++ + +K A +IL +++ IT G+ P A+LY+S + +G
Sbjct: 216 DTSSFISKISNNM--NLKEKTKRGAFEILKLCEKEQITAGKHPVAQAAASLYISCIMNGE 273
Query: 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261
K S+ + + T+ R + T
Sbjct: 274 KISQKKFSVEAGVSDVTIRNRAVLIRKT 301
>gi|389846515|ref|YP_006348754.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448615811|ref|ZP_21664574.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243821|gb|AFK18767.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751942|gb|EMA03373.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 345
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 93/193 (48%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ES + A Y A+ + GR E V + LY
Sbjct: 152 SKERNLKQALGEIDRMASALGLPES--VRETASVIYRRALNDDLLPGRSIEGVATAALYA 209
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ R S P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 210 SARMASTPRSLDEITSVSRVEKEEIARTYRYVVRELKLE-----IKPADPEQYVPRFASE 264
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ + +
Sbjct: 265 L--GLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSGVAN 322
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 323 ISEVTIRNRYHEL 335
>gi|284161172|ref|YP_003399795.1| transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
gi|284011169|gb|ADB57122.1| Transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
Length = 329
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 98/192 (51%), Gaps = 11/192 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + +S + A Y A+ +N +GR E V A+ LY AC
Sbjct: 138 ERNLAFALSELDRMASALGLPKS--VRETAAVIYRKAIEKNLIRGRSIEGVVAAALYAAC 195
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ P L + + Y ++ E+G Y +IA E + L P+ ++ +F L
Sbjct: 196 RQAGVPRTLDEIAQYSRVDRKEIGRTY------RFIARELGLKLMPTSPADYVPRFCAAL 249
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G + +V A +I+ + +T+GR P+G+ AA+Y++++ G + ++ ++ ++ +
Sbjct: 250 --GLSGEVQRKAIEIIKKAEERELTSGRGPTGVAAAAIYIASILCGERRTQREVAEVAGV 307
Query: 247 CEATLMKRLIEF 258
E T+ R E
Sbjct: 308 TEVTIRNRYKEL 319
>gi|124360449|gb|ABN08459.1| hypothetical protein MtrDRAFT_AC157472g6v2 [Medicago truncatula]
Length = 149
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 36/47 (76%)
Query: 405 ATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEE 451
+T EA D S++FSDIDD EVDGYL NEEE+HY++ WE +EY EE
Sbjct: 95 STAEAQDESESFSDIDDEEVDGYLLNEEERHYRQKTWENQYQEYYEE 141
>gi|257052263|ref|YP_003130096.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691026|gb|ACV11363.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 96/193 (49%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + +Y
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASVYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + ++ + E+ Y + + L + ++ DP ++ +FT
Sbjct: 188 AARQAGVPRSLDELTDVSRVEKDEIARTYRYVVRELGLE-----VRPADPESYVPRFTSD 242
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++ AR++LA+ K + + +G+ P GL AA+Y ++L K +++ + ++
Sbjct: 243 L--ELSEEAERRARELLANAKEEGVHSGKSPVGLAAAAIYAASLLTNEKTTQAAVSEVAD 300
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 301 ISEVTIRNRYHEL 313
>gi|383319295|ref|YP_005380136.1| transcription initiation factor TFIIB [Methanocella conradii HZ254]
gi|379320665|gb|AFC99617.1| Transcription initiation factor TFIIB [Methanocella conradii HZ254]
Length = 337
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 68 ERLMEKAFDDMRQMKNAL----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
ER + A ++ +M +AL NI E+ +V Y AV +N +GR E V A+ L
Sbjct: 146 ERNLAFALSELDRMASALGLPRNIRETSAVV------YRKAVTKNLIRGRSIEGVAAAAL 199
Query: 124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
Y ACRQ P L + + ++ E+G Y + + L + L P ++ +F
Sbjct: 200 YAACRQNGVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LMPTSPIDYVPRFC 254
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
L G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ +
Sbjct: 255 SGLNLKG--EVQSRAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANV 312
Query: 244 VHICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 313 AGVTEVTIRNRYKEL 327
>gi|297527296|ref|YP_003669320.1| Transcription factor TFIIB cyclin-like protein [Staphylothermus
hellenicus DSM 12710]
gi|297256212|gb|ADI32421.1| Transcription factor TFIIB cyclin-related protein [Staphylothermus
hellenicus DSM 12710]
Length = 313
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 9/199 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S +S ER + +A +++ ++ + LN+ + + A R Y AV + +GR E V
Sbjct: 113 RSRIQSSIERNLAQAMNELDRLSDQLNLPRN--VKEEAARIYRRAVEKGLVRGRSIESVI 170
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+ +Y ACR+ P L + S + + ++ Y L + L I +++ DP F+
Sbjct: 171 AAAIYAACRELKVPRTLDEISKHTKSSRKDIARCYRLLLKELDIKVQTS-----DPIDFI 225
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ L GG V A +IL + +T G+ P+GL AA+Y++A G + ++ +
Sbjct: 226 PRIAHALNLGGG--VMKKAAEILHKARSIGVTAGKDPAGLAAAAVYIAAQLSGERRTQKE 283
Query: 240 IVKIVHICEATLMKRLIEF 258
I + + E T+ R E
Sbjct: 284 IAHVAGVTEVTVRNRYKEL 302
>gi|432328477|ref|YP_007246621.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135186|gb|AGB04455.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 312
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S ER + +A ++ +M A N+G ++ A Y AV N +GR E V A+ +Y
Sbjct: 119 SAERNLSQALQELERM--ASNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYA 176
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
ACR P L + S I E+G VY + + L + + P ++ +F +
Sbjct: 177 ACRMLGIPRTLEEISTVTRIKKREIGRVYRIMSRTLKLN-----IYPTKPEDYIDRFCSK 231
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G K A +I+ + I +GR P+G+ AA+Y++A+ G + ++ ++ +
Sbjct: 232 LKLSGEVKT--KAYEIIKMARERDIISGRGPTGVAAAAIYIAAILMGERRTQREVADVAG 289
Query: 246 ICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 290 VTEVTIRNRYKEL 302
>gi|257052295|ref|YP_003130128.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|335441176|ref|ZP_08561897.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|256691058|gb|ACV11395.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|334888347|gb|EGM26646.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 321
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALDDDLIRGRSIEGVATSALYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELE 244
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 245 L--SEEVQSKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 302
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 303 EVTIRNRYQE 312
>gi|448590590|ref|ZP_21650355.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445734086|gb|ELZ85645.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 315
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 93/193 (48%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 122 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSALYA 179
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 180 AARMADTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASE 234
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +
Sbjct: 235 L--GLSDEPERRARQLLKNAKEQSVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVAN 292
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 293 ISEVTIRNRYHEL 305
>gi|433441074|ref|ZP_20408566.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
gi|432187300|gb|ELK44608.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
Length = 208
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 9/187 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 20 ERNLQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAAC 77
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ+ P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 78 RQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL- 131
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 132 -DLSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 190
Query: 248 EATLMKR 254
E T+ R
Sbjct: 191 EVTIRNR 197
>gi|76803041|ref|YP_331136.1| transcription initiation factor TFB 6 [Natronomonas pharaonis DSM
2160]
gi|76558906|emb|CAI50502.2| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 329
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 110/238 (46%), Gaps = 17/238 (7%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQSQLSG-----NFVRTIQSEYGA--SRERLMEKAFDDMR 79
+ + D +T+ + K+A GQS S N +R Q + ER ++ A ++
Sbjct: 93 QTMHDKGLTTQIDWKDKDAYGQSISSDKRSQMNRLRKWQERIRTKDAGERNLQFALSEID 152
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + S + VA Y A+ + +GR E + LY ACRQ+S P L +
Sbjct: 153 RMASALGVPRS--VREVASVTYRRALDEDLIRGRSIEGAATATLYAACRQESIPRSLDEV 210
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
+ + E+G Y L Q L + +K DP ++ +F L ++ V R
Sbjct: 211 AEVARVEQKEIGRTYRYLSQELGLE-----IKPADPKEYVPRFCSEL--ALSEAVEQKTR 263
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 257
+I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+ R E
Sbjct: 264 EIIDVTAEEGMLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQE 321
>gi|222479934|ref|YP_002566171.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222452836|gb|ACM57101.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 9/199 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A++ N GR E V + LY
Sbjct: 141 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYA 198
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + ++ DP ++ +F R
Sbjct: 199 AARQAGNPRSLDEISAVSRVDKMELTRTYRYVIRELKLE-----IQPADPGSYVPRFVSR 253
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G +++ AR++L S KR IT+G+ P GL +A+Y +AL K ++S + ++
Sbjct: 254 L--GLSEETQRVARELLDSAKRAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSEVAD 311
Query: 246 ICEATLMKRLIEFENTDSG 264
I E T+ R E + G
Sbjct: 312 ISEVTIRNRYKELLDASEG 330
>gi|352682668|ref|YP_004893192.1| transcription initiation factor B [Thermoproteus tenax Kra 1]
gi|269990954|emb|CAP46908.1| transcription initiation factor IIB [Thermoproteus tenax Kra 1]
gi|350275467|emb|CCC82114.1| transcription initiation factor B [Thermoproteus tenax Kra 1]
Length = 332
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 15/201 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++K+++ G V A Y A+ + +GR E +
Sbjct: 135 VQTSY----ERNFVQAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 188
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 189 AAAALYMACRMLKTPRPLDELIRYTKASRREVARCYRLLLR------ELNVRVPISDPVL 242
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G+ V TA DI+ K+ +T G+ P+GL AA+Y+++L HG ++
Sbjct: 243 YISRVAEQLKLTGD--VVKTAIDIINRAKKAGLTAGKDPAGLAAAAVYIASLLHGDNRTQ 300
Query: 238 SDIVKIVHICEATLMKRLIEF 258
D + E T+ R E
Sbjct: 301 KDFAVAAGVTEVTVRNRYKEL 321
>gi|169863349|ref|XP_001838296.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|116500589|gb|EAU83484.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 340
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 11/223 (4%)
Query: 40 TFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
T + G S +S R + ER + AF D+ + ++ ++ I +AK+
Sbjct: 101 TVISFRDGGSGISRELQRAASRAQSSRTERNLLTAFRDISNWCDQFSLPKT--ISDIAKQ 158
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y +G+ E V A+C+++ACRQ P D + +++ LG Y L +
Sbjct: 159 LYKRTDEEKLLRGKPLEAVIAACIFIACRQAHVPRSFKDICSLTHVSKKMLGQCYKVLER 218
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+ P FL ++ + L LP + +C RD++ + + I R P
Sbjct: 219 AF---TQVGAAPSSGPEGFLVRYCNYLDLPPNVQGIC---RDVIVAAREHGIADSRSPLS 272
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATL--MKRLIEFE 259
+ G A+Y + G + +I ++ + E T+ + RL FE
Sbjct: 273 IAGGAIYFCCMLLGHTRTLREISQVAGVTETTIQSVYRLYYFE 315
>gi|299748194|ref|XP_002911260.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|298407858|gb|EFI27766.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 346
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 99/250 (39%), Gaps = 25/250 (10%)
Query: 40 TFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
T + G S ++ R ER + AF D+ + ++ ++ I +AK+
Sbjct: 99 TVISFRDGGSGIARELQRAASRSQNNRSERNLLTAFRDISNWCDQFSLPKT--ISDIAKQ 156
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y A +G+ E V A+C+++ACR+ P + N ++ LG Y L Q
Sbjct: 157 LYKRADEEKLLRGKPVEAVIAACIFIACRKAHVPRTFREICNLTRVSKKMLGQCYKALEQ 216
Query: 160 VLYIADESNV----LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGR 214
L ++ ++ P L ++ + L LP + +C +I+ + + I GR
Sbjct: 217 SLNLSGPESMPLANTPTTGPEKLLVRYCNHLDLPANVQAICS---EIIVNARNHGIADGR 273
Query: 215 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL---------------MKRLIEFE 259
P + G A+Y + L G +I + + E T+ K IE
Sbjct: 274 SPISIAGGAIYFTCLLLGKPKPIREISAVAGVSEGTIKLVYRLYYNDREKLVKKEWIESG 333
Query: 260 NTDSGSLTIE 269
D LTIE
Sbjct: 334 KADLSRLTIE 343
>gi|48478412|ref|YP_024118.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431060|gb|AAT43925.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 304
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+G +I A Y AV RN +GR E + + +Y ACRQ + P L + S +IN
Sbjct: 131 LGIPKDIKESAALIYRKAVERNLIRGRSIESIVCAAIYAACRQVNIPRTLDEISKAADIN 190
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
++G Y L + L + LK P ++ +F ++L +K V + +I+ +
Sbjct: 191 KKKIGKAYRHLAKELKLN-----LKPTTPYSYVSQFCNKL--NLDKDVIIKSEEIIRRVN 243
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
I+ G+ P+G+ AA+Y++A+ G ++ +I K+ + E T+ R E
Sbjct: 244 ETGISAGKGPTGVAAAAIYIAAIISGKPKTQKEISKVSGVTEVTIRNRYKEI 295
>gi|294883444|ref|XP_002770943.1| hypothetical protein Pmar_PMAR003232 [Perkinsus marinus ATCC 50983]
gi|239874069|gb|EER02759.1| hypothetical protein Pmar_PMAR003232 [Perkinsus marinus ATCC 50983]
Length = 179
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 24/133 (18%)
Query: 411 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 470
D ++ SD+ D E++GYL EE K IW + N+ YL E A ++ A K A + +
Sbjct: 67 DDEESISDVSDSEIEGYLLTPEESEAKSAIWHQWNKPYLMEWAIRDEQRKAKKRAEDEAK 126
Query: 471 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RL 528
+N K +KR + GPA +ALEAT+ L+KK L
Sbjct: 127 RNG----------------------TYKPRKRPVHSTAMGPADSALEATQMALSKKARSL 164
Query: 529 SSKINYDVLEKLF 541
S+++N LE+LF
Sbjct: 165 SNRVNMSALEELF 177
>gi|332795784|ref|YP_004457284.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332693519|gb|AEE92986.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 291
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 99/200 (49%), Gaps = 9/200 (4%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
I+S G S +R + KA + ++ + N+G + A Y A+ + KGR E+V
Sbjct: 89 IRSRVGTSEQRNLVKAMTILERIID--NLGLPKAVKEEAAIIYRKALEKKLIKGRSIEEV 146
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIF 178
A+ +Y ACR+ + P L + S + N E+G Y L + ++ + DP +
Sbjct: 147 VAASVYAACRKMNIPTTLDEISKATSANKKEIGKAYR-----LLLREDVTEVPASDPKYY 201
Query: 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 238
+ K L G + KV A +I+ K+ IT+G+ P+ + AA+Y++A +G + S+
Sbjct: 202 VMKIAS--LLGLSGKVMTAATEIVERAKKAGITSGKDPASIAAAAVYIAANINGERRSQR 259
Query: 239 DIVKIVHICEATLMKRLIEF 258
+I ++ + + T+ R E
Sbjct: 260 EISEVSGVTQVTIRNRYREI 279
>gi|448455066|ref|ZP_21594392.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
gi|445814181|gb|EMA64149.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
Length = 333
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 11/200 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S++R +++A ++ +M +AL G D + A Y A++ N GR E V + LY
Sbjct: 141 SKDRNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYA 198
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L +F+ ++ EL Y + + L + ++ DP ++ +F R
Sbjct: 199 AARQDGNPRSLDEFTAVSRVDKMELTRTYRYVIRELKLE-----IQPADPESYVPRFVSR 253
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L KR IT+G+ P GL +A+Y +AL K ++S + +
Sbjct: 254 LDLSEETQRL---ARELLDGAKRAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSAVA 310
Query: 245 HICEATLMKRLIEFENTDSG 264
I E T+ R E + G
Sbjct: 311 DISEVTIRNRYKELLDASEG 330
>gi|374325545|ref|YP_005083742.1| Transcription factor TFIIB [Pyrobaculum sp. 1860]
gi|356640811|gb|AET31490.1| Transcription factor TFIIB [Pyrobaculum sp. 1860]
Length = 333
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 15/201 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++++++ I + A Y A+ + +GR E +
Sbjct: 136 VQTSY----ERNFIQAAQELERLRSSMGIPRP--CIEQALEIYRQALEKELVRGRSVEAM 189
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 190 AAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPIL 243
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G +V +A DIL K+ IT G+ P+GL AA+Y+++L HG ++
Sbjct: 244 YISRIAEQLKLSG--EVIKSAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQ 301
Query: 238 SDIVKIVHICEATLMKRLIEF 258
D + E T+ R E
Sbjct: 302 KDFAVAAGVTEVTVRNRYKEL 322
>gi|395646538|ref|ZP_10434398.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
gi|395443278|gb|EJG08035.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
Length = 336
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 145 ERNLAFALSELDRMASAL--GLPRNVRETAAVIYRDAVDKNLIRGRSIEGVAAAALYAAC 202
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + + ++ E+G Y + + L + L P ++ +F L
Sbjct: 203 RQCSVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLT 257
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ +
Sbjct: 258 LKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILSGERRTQREVAEVAGVT 315
Query: 248 EATLMKRLIEF 258
E T+ R E
Sbjct: 316 EVTIRNRYKEL 326
>gi|322369913|ref|ZP_08044475.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320550249|gb|EFW91901.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 320
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 98/203 (48%), Gaps = 9/203 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + +A Y A+ + GR E V SC+Y
Sbjct: 127 SKERNLKQALGEIDRMASAL--GLPDNVREMASVIYRRALNEDLLPGRSIEGVSTSCVYA 184
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + ++ E+ Y + + L + +K DP ++ +F
Sbjct: 185 AARQAGVPRSLDEITEVSRVDKSEVARTYRYVVRELSLE-----VKPADPESYVPRFASG 239
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L + + AR++L + K + +G+ P GL AA+Y +AL K +++++ +
Sbjct: 240 LEL--SDEAEHRARELLRNAKEQGVHSGKSPVGLAAAAVYAAALLTNEKTTQAEVSDVAD 297
Query: 246 ICEATLMKRLIEFENTDSGSLTI 268
I E T+ R E + G++ +
Sbjct: 298 ISEVTIRNRYHELLEAEEGTVAL 320
>gi|335441148|ref|ZP_08561869.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334888319|gb|EGM26618.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 325
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 96/193 (49%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + +Y
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASVYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + ++ + E+ Y + + L + ++ DP ++ +FT
Sbjct: 190 AARQAGVPRSLDELTDVSRVEKDEIARTYRYVVRELGLE-----VRPADPESYVPRFTSD 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++ AR++LA+ K + + +G+ P GL AA+Y ++L K +++ + ++
Sbjct: 245 L--ELSEEAERRARELLANAKEEGVHSGKSPVGLAAAAIYAASLLTNEKTTQAAVSEVAD 302
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 303 ISEVTIRNRYHEL 315
>gi|291333316|gb|ADD93023.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S04-C246]
Length = 308
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 110/238 (46%), Gaps = 17/238 (7%)
Query: 29 VLEDHNFSTEATFV-KNAAGQS---QLSGNFVRT----IQSEYGASRERLMEKAFDDMRQ 80
+L D ST+ + K+ +G+S + F R +S + ER + A ++ +
Sbjct: 70 MLHDKGLSTDIDWQNKDYSGKSISSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 129
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M + L++ +S I A Y AV +GR E V A+ LY ACRQ S P L +
Sbjct: 130 MASRLDLPKS--IREAAAVNYKKAVEARLIRGRSIEGVAAASLYAACRQCSNPRTLDEIG 187
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
E+G Y + + L + + P ++ +F L + +V A +
Sbjct: 188 EASRTGRKEIGRTYRFMVRELKMK-----IPPTKPEDYIPRFCSGL--DLDAEVQAKAYE 240
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
++A+ + +T+GR P+G+ + +Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 241 LIAAAQERELTSGRGPTGIAASIIYIASVLCGKRRTQREVAEVAGVTEVTIRNRYKEL 298
>gi|424811965|ref|ZP_18237205.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756187|gb|EGQ39770.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
Length = 358
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 11/190 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S++R + A ++ M + LN+ ES + R Y AV + +GR E + ++ LY+
Sbjct: 160 SKDRNLGFALSELNSMISNLNLPES--VHEEVARLYEKAVDQGLVRGRSMESIISALLYI 217
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
R++ P L + S+ I E+G Y Y+A E + + P ++ +F
Sbjct: 218 VARKQGTPRTLDEISDASGIEKREIGRAYR------YVARELGLRILPAKPQDYVPRFAG 271
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
+L G +V AR+IL + + +G+ P+GL AALY++A+ G K ++ ++ +V
Sbjct: 272 KLQLSG--EVQARARNILEEAREKDLLSGKGPTGLAAAALYIAAVLEGEKRTQREVADVV 329
Query: 245 HICEATLMKR 254
+ E T+ R
Sbjct: 330 GVTEVTIRNR 339
>gi|284165712|ref|YP_003403991.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284015367|gb|ADB61318.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 323
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 130 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 187
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 188 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 242
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL AA+Y +AL K +++D+ ++
Sbjct: 243 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVA 299
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 300 SISEVTIRNRYKEL 313
>gi|397773294|ref|YP_006540840.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340933|ref|ZP_21529900.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682387|gb|AFO56764.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629271|gb|ELY82562.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 191 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 245
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL AA+Y +AL K +++++ ++
Sbjct: 246 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVA 302
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 303 SISEVTIRNRYKEL 316
>gi|282165287|ref|YP_003357672.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
gi|282157601|dbj|BAI62689.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
Length = 336
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 68 ERLMEKAFDDMRQMKNAL----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCL 123
ER + A ++ +M +AL NI E+ +V Y AV +N +GR E V A+ L
Sbjct: 145 ERNLAFALSELDRMASALGLPRNIRETSAVV------YRKAVTKNLIRGRSIEGVAAAAL 198
Query: 124 YLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFT 183
Y ACRQ P L + + ++ E+G Y + + L + L P ++ +F
Sbjct: 199 YAACRQNGVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LMPTSPIDYVPRFC 253
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
L G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ +
Sbjct: 254 SGLSLKG--EVQSRAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANV 311
Query: 244 VHICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 312 AGVTEVTIRNRYKEL 326
>gi|260818777|ref|XP_002604559.1| hypothetical protein BRAFLDRAFT_79421 [Branchiostoma floridae]
gi|229289886|gb|EEN60570.1| hypothetical protein BRAFLDRAFT_79421 [Branchiostoma floridae]
Length = 1246
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 119/274 (43%), Gaps = 27/274 (9%)
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 252
+V TA +++ MKRDW+ GR+PSGLCGAAL VSA H ++ +I+K++ E L
Sbjct: 176 EVSMTALRLVSRMKRDWMHGGRQPSGLCGAALLVSARLHDFHRTQKEIIKVL---EEQLD 232
Query: 253 KRL------IEFENTDSGSLTIEDFMARKKEL--HEGVAANLPNNGPKVSGMNEVLCKHK 304
K + +E E E M + K L +G+ + P S M + +
Sbjct: 233 KEIEGELTSLEVEIEKELEREREKRMKKMKNLLAAKGITESDIRGTPAGSPMPPLEGQED 292
Query: 305 DTGKP-FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESD- 362
T P C S ++ G +PP + +E++ + +E E E
Sbjct: 293 GTSSPGTPCSRVDS-----PSVVPGTSSSGNPPEQKHSEQQHSEQQLPQEQQLSEEEVMG 347
Query: 363 ---SPFMSRVDKVQSPEPERVPKNCTTQTASNE---GEGDHTKTPGVDATTEASDGSDNF 416
SPF + PEP P++ + + +E + + + + G +
Sbjct: 348 KILSPFAG-IAPALGPEP--TPESLGIKDSLDECLKVASEKEEGTEDEDGEKEEGGELDL 404
Query: 417 SDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLE 450
+ I+D E+D +L N+EE K IW N +Y++
Sbjct: 405 TGINDEELDWFLLNDEEVRIKTEIWTLANADYIQ 438
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 163 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
+ + S + DP +++H+F +L G +V TA +++ MKRDW+ GR+PSGLCG
Sbjct: 4 VPENSGCVSAGDPCLYIHRFAHKLEFGERTHEVSMTALRLVSRMKRDWMHGGRRPSGLCG 63
Query: 222 AAL 224
A +
Sbjct: 64 AGV 66
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAAL 224
+V TA +++ MKRDW+ GR+PSGLCGA +
Sbjct: 137 EVSMTALRLVSRMKRDWMHGGRRPSGLCGAGM 168
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 497 EKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 540
+ Q +R + K A TA EA +ML +K++SSKINYDVL L
Sbjct: 1073 QGQLRRKPKKKQPIQASTAGEAIEKMLQEKKISSKINYDVLRDL 1116
>gi|42557795|emb|CAF28768.1| putative transcription initiation factor TFIIB [uncultured
crenarchaeote]
Length = 304
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 17/233 (7%)
Query: 30 LEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQM 81
+ D +T V A LS + TI+ S+ +R +AF ++ ++
Sbjct: 71 MHDMGLATIIGPVDKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRL 130
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
K+ L +G D ++ A Y A+ + +GR + A+ LY ACR P L D ++
Sbjct: 131 KDKLAVG--DAVIEKAAYVYRKALEKGLVRGRSISALVAAALYAACRDTETPRTLKDIAH 188
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
NI ++ Y L + L + + VDP + + + G ++K A +I
Sbjct: 189 ASNIKKKDVARCYRLLIRELDLK-----MPVVDPVKCVARIASK--SGLSEKTKRKALEI 241
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
L ++ I+ G+ P GL AALYV+ + +G ++ D+ + + E T+ R
Sbjct: 242 LKKAEQGKISAGKDPMGLAAAALYVACVMNGENKTQKDVAEAAGVTEVTIRNR 294
>gi|399575166|ref|ZP_10768924.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
gi|399239434|gb|EJN60360.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
Length = 329
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M + L G D + A Y A+ + GR E V S LY
Sbjct: 136 SKERNLKQALGEIDRMASGL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 193
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + ++ ++ E+ Y + + L + ++ DP ++ +F
Sbjct: 194 AARQAGTPRSLDEIASVSRVDKDEIARTYRYVVRELKLE-----IQPADPEQYVPRFASD 248
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR +L + K + + +G+ P GL AA+Y ++L K ++S++ +
Sbjct: 249 LDLSDESER---RARKLLQNAKEEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSDVA 305
Query: 245 HICEATLMKRLIEF 258
+I E T+ R E
Sbjct: 306 NISEVTIRNRYHEL 319
>gi|448316805|ref|ZP_21506385.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445606975|gb|ELY60873.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 321
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R + P L + + ++ E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEVAAVSRVDRMEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELD 244
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
LP ++V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + +
Sbjct: 245 LP---EEVQLKANEIITTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQV 301
Query: 247 CEATLMKRLIE 257
E T+ R E
Sbjct: 302 TEVTIRNRYQE 312
>gi|435846578|ref|YP_007308828.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672846|gb|AGB37038.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 328
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 123/296 (41%), Gaps = 53/296 (17%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLE-------------------------------- 31
CS C P + C+ CG V+E
Sbjct: 36 CSECGSSDVVQHPSPGERICENCGLVIEEGMIDSGPEWRAFNHQERQNKSRVGAPTTQTI 95
Query: 32 -DHNFSTEATFV-KNAAGQSQLSG-----NFVRTIQSEYGA--SRERLMEKAFDDMRQMK 82
D +T+ + K+A G+S S N +R Q+ + ER ++ A ++ +M
Sbjct: 96 HDKGLTTQIDWKNKDAYGRSISSKKRSQMNRLRKWQTRIRTKDAGERNLQFALSEIERMA 155
Query: 83 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
+AL + ++ + V Y A+ + +GR E V + LY CRQ+ P L + +
Sbjct: 156 SALGVPKA--VREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEVTEV 213
Query: 143 LNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
I E+ Y YI++E + L +DP ++ +FT +L +++V A++I
Sbjct: 214 SRIERIEISRTYR------YISNELGLELLPIDPKQYVPRFTSKL--DLSQEVETKAKEI 265
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 257
+ D + +GR PSG AA+Y + L K ++ D+ + + E T+ R E
Sbjct: 266 IDETA-DPLLSGRGPSGFAAAAIYAATLLCNEKRTQKDVADVAQVTEVTIRNRYQE 320
>gi|448345937|ref|ZP_21534826.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633870|gb|ELY87057.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 191 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 245
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL AA+Y +AL K +++++ ++
Sbjct: 246 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVA 302
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 303 SISEVTIRNRYKEL 316
>gi|448336782|ref|ZP_21525873.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627873|gb|ELY81188.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 326
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 191 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 245
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL AA+Y +AL K +++++ ++
Sbjct: 246 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVA 302
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 303 SISEVTIRNRYKEL 316
>gi|448301306|ref|ZP_21491299.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445584042|gb|ELY38366.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 325
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 9/200 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ES + A Y A+ + GR E V + LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPES--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ RQ P L + S + E+ Y + + L + +K DP ++ +F
Sbjct: 191 SARQAGTPRSLDEISAVSRVEKDEVARTYRYVVRELGLE-----VKPADPEQYVPRFASD 245
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L + + AR +L++ K I +G+ P GL AA+Y +AL K +++D+ ++ +
Sbjct: 246 L--DLSDETERRARSLLSTAKEKGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVAN 303
Query: 246 ICEATLMKRLIEFENTDSGS 265
I E T+ R E + G+
Sbjct: 304 ISEVTIRNRYHELLEAEEGA 323
>gi|435849538|ref|YP_007311726.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433675746|gb|AGB39936.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 318
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 34 NFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESD 91
++ E + ++ + + + N +R Q+ + ER ++ A ++ +M +AL + +
Sbjct: 95 DWKNEDAYGRSISSEKRSQMNRLRKWQTRIRTKDAGERNLQFALSEIDRMASALGVPRA- 153
Query: 92 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 151
+ V Y A+ + +GR E V + LY CRQ+ P L + + I E+
Sbjct: 154 -VREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEITEVSRIERIEIS 212
Query: 152 AVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDW 209
Y YI++E + L+ +DP ++ +FT +L LP ++V A +I+ D
Sbjct: 213 RTYR------YISNELGLELRPIDPKQYVPRFTSKLELP---QEVETKANEIIDETA-DP 262
Query: 210 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 257
+ +GR PSG AA+Y +AL K ++ ++ + + E T+ R E
Sbjct: 263 LLSGRGPSGFAAAAIYAAALLCNEKRTQREVADVAQVTEVTIRNRYQE 310
>gi|14195251|sp|Q9P9I7.1|TF2B_METTL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|6735522|emb|CAB69073.1| archaeal transcription factor B [Methanothermococcus
thermolithotrophicus]
Length = 339
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEGSRVDRKEIGRTYR---- 233
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLTPTNPIDYVPRFASELKLPG---EVESKAISILQKANEKGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|344212001|ref|YP_004796321.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343783356|gb|AEM57333.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 322
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + + Y A+ + GR E V S LY
Sbjct: 131 SKERNLKQALGEIDRMASALGLPQN--VRETSSVIYRRALGDDLLPGRSIEGVATSALYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + + + EL Y + + L + ++ DP +L +F
Sbjct: 189 AARMAGNPRSLDEMARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISD 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G +++ ARD++ ++ + +G+ P G+ AA+Y +AL K ++S + +
Sbjct: 244 L--GLSEETQRQARDLIEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVAD 301
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 302 ISEVTIRNRYKEL 314
>gi|409079539|gb|EKM79900.1| hypothetical protein AGABI1DRAFT_113149 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426192509|gb|EKV42445.1| hypothetical protein AGABI2DRAFT_195784 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 11/190 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + AF D+ + ++ ++ I +AK+ Y + +G+ + V A+C+++AC
Sbjct: 129 ERNILTAFRDISSWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIAC 186
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA-----DESNVLKQVDPSIFLHKF 182
RQ P + +++ LG Y L Q ++ + ++ P L ++
Sbjct: 187 RQAHVPRTFREICTLTHVSKKVLGQCYKALEQAFNLSPGATHNSNSSSTPTGPENLLVRY 246
Query: 183 TDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIV 241
+ L LP + +C DI+ + ++ I GR P + G A+Y + L G S DI
Sbjct: 247 CNHLDLPANVQTICS---DIIVTARKYGIADGRSPVSIAGGAIYFTCLLLGKSKSVRDIS 303
Query: 242 KIVHICEATL 251
+ + E T+
Sbjct: 304 AVAGVSEGTI 313
>gi|435846604|ref|YP_007308854.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672872|gb|AGB37064.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 321
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R + P L + + ++ E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEVAAVSRVDRMEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELD 244
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
LP ++V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + +
Sbjct: 245 LP---EEVQLKANEIITTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQV 301
Query: 247 CEATLMKRLIE 257
E T+ R E
Sbjct: 302 TEVTIRNRYQE 312
>gi|124486326|ref|YP_001030942.1| transcription initiation factor IIB [Methanocorpusculum labreanum
Z]
gi|124363867|gb|ABN07675.1| Transcription initiation factor IIB (TFIIB) [Methanocorpusculum
labreanum Z]
Length = 340
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + + + A Y AV +N +GR E V A+ LY AC
Sbjct: 149 ERNLAFALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 206
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ + P L + + ++ E+G Y + + L + L P ++ +F L
Sbjct: 207 RQCNVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPGDYVPRFCSGL- 260
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ + +
Sbjct: 261 -GLKGEVQSRAMEILKQAGERELTSGRGPTGVAAAAIYISSILSGERRTQREVADVAGVT 319
Query: 248 EATLMKRLIEF 258
E T+ R E
Sbjct: 320 EVTIRNRYKEL 330
>gi|313127037|ref|YP_004037307.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288496|ref|ZP_21479694.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293402|gb|ADQ67862.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445568881|gb|ELY23456.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 343
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 19/239 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGN------FVRTIQSEYGA--SRERLMEKAFDDMRQ 80
++ D ST + A + LS N +RT + S+ER +++A ++ +
Sbjct: 96 MMHDRGLSTNIGWQNKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 155
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL + ES + A Y A+ + GR E + + L+ A R P L + +
Sbjct: 156 MASALGLPES--VRETASVIYRRALEDDLLPGRSIEGIATASLHAAARMAQVPRSLDEVA 213
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCDTAR 199
+ ++ E Y + + L + +K DP+ +L +F +D +P K+ TAR
Sbjct: 214 HVSRVDEEEFERAYRYIVRELSLE-----IKPADPTEYLPRFASDIDVP---KETERTAR 265
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
++L + K I +G+ P GL AALY +A K ++SD+ + I E T+ R E
Sbjct: 266 ELLENAKTVGIHSGKSPVGLAAAALYAAAQLTNEKVTQSDVSDVTDISEVTIRNRYQEL 324
>gi|448455329|ref|ZP_21594509.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445813931|gb|EMA63904.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 209
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 9/199 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V + LY
Sbjct: 16 SKERNLKQALGEVDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYA 73
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 74 AARQAGTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASD 128
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K I +G+ P GL AA+Y ++L K ++S++ + +
Sbjct: 129 L--GLSDEAERRARSLLDTAKSQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVAN 186
Query: 246 ICEATLMKRLIEFENTDSG 264
I E T+ R E + G
Sbjct: 187 ISEVTIRNRYHELLEAEDG 205
>gi|327311923|ref|YP_004338820.1| transcription initiation factor IIB [Thermoproteus uzoniensis
768-20]
gi|326948402|gb|AEA13508.1| transcription initiation factor IIB [Thermoproteus uzoniensis
768-20]
Length = 317
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 15/201 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++K+A+ G V A Y A+ + +GR E +
Sbjct: 120 VQTSY----ERNFVQAAQELERLKSAM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 173
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + + + E+ Y L + E NV + DP +
Sbjct: 174 AAAALYMACRMLKTPRPLDELIRFTKASRREVARCYRLLLR------ELNVRVPISDPVL 227
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G+ V TA DI+ K+ +T G+ P+GL AA+Y+++L HG ++
Sbjct: 228 YISRVAEQLKLTGD--VVKTAIDIINKAKKAGLTAGKDPAGLAAAAVYIASLLHGDNRTQ 285
Query: 238 SDIVKIVHICEATLMKRLIEF 258
D + E T+ R E
Sbjct: 286 KDFAIAAGVTEVTVRNRYKEL 306
>gi|268326216|emb|CBH39804.1| transcription initiation factor IIB [uncultured archaeon]
Length = 302
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S E+ + A ++ +M ALN+ ++ Y A R+ KGR E++ ++ LY+
Sbjct: 94 SNEKSLSFALGEIDRMACALNLPR--DLRETTSLLYRKAAKRSLIKGRSIEELASAMLYI 151
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
CRQ P L + + + + ++ Y+ L L I L DP+ ++ +F
Sbjct: 152 TCRQYGIPRTLKEIAAVSRMPLKKIRRAYIFLLHKLEIK-----LAPADPACYIPRFCSE 206
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + A +I++ K G P+G AA+Y+++L G D+ K+
Sbjct: 207 L--GLRDVIRERAIEIVSEDKETIAAKGWTPTGTAAAAIYLASLLSGESVEVKDMAKVAG 264
Query: 246 ICEATLMKRLIEF 258
T+ R E
Sbjct: 265 TTPVTIQNRYKEL 277
>gi|15789590|ref|NP_279414.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235302|ref|YP_001688502.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195247|sp|Q9HSB3.1|TF2B6_HALSA RecName: Full=Transcription initiation factor IIB 6; Short=TFIIB 6
gi|10579944|gb|AAG18894.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726368|emb|CAP13149.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 319
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 12/199 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
++ER +++A ++ +M +AL G D + A Y A+ + GR E V SC+Y
Sbjct: 127 AKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYA 184
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + ++ + E+ Y + + L + + DP ++ +F
Sbjct: 185 AARQAGVPRSLDEIADVSRVEKAEIARTYRYVVRELGLE-----VAPADPESYVPRFASD 239
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR++L + K + +G+ P GL AA+Y +AL K +++ + ++
Sbjct: 240 L--GLSDEASHRARELLKTAKDKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAKVSEVAD 297
Query: 246 ICEATLMKR---LIEFENT 261
I E T+ R L+E E+T
Sbjct: 298 ISEVTIRNRYHELLEAEDT 316
>gi|448370421|ref|ZP_21556593.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445649168|gb|ELZ02110.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 323
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 134 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAAC 191
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R + P L + + +N E+G Y + Q L + ++ V+P ++ +F L
Sbjct: 192 RMEGIPRSLDEVAAVSRVNRMEIGRTYRYISQELGLE-----MEPVNPKKYVPRFCSELD 246
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
LP ++V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + +
Sbjct: 247 LP---EEVQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQKEVADVAQV 303
Query: 247 CEATLMKRLIE 257
E T+ R E
Sbjct: 304 TEVTIRNRYQE 314
>gi|432329785|ref|YP_007247928.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
gi|432136494|gb|AGB01421.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
Length = 336
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 94/192 (48%), Gaps = 11/192 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + + + A Y AV +N +GR E V A+ LY AC
Sbjct: 145 ERNLAFALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 202
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ S P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 203 RQCSVPRTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 256
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ +
Sbjct: 257 TLKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGV 314
Query: 247 CEATLMKRLIEF 258
E T+ R E
Sbjct: 315 TEVTIRNRYKEL 326
>gi|448306111|ref|ZP_21496021.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445598749|gb|ELY52801.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 325
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 190 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFISD 244
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL AA+Y +AL K +++D+ +
Sbjct: 245 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVA 301
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 302 SISEVTIRNRYKEL 315
>gi|219851004|ref|YP_002465436.1| transcription initiation factor IIB [Methanosphaerula palustris
E1-9c]
gi|254784087|sp|B8GJQ9.1|TF2B_METPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|219545263|gb|ACL15713.1| Transcription factor TFIIB cyclin-related [Methanosphaerula
palustris E1-9c]
Length = 334
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 143 ERNLAFALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 200
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + + ++ E+G Y + + L + L P ++ +F L
Sbjct: 201 RQCSVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLT 255
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ +
Sbjct: 256 LKG--EVQSRAVEILRQAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVT 313
Query: 248 EATLMKRLIEF 258
E T+ R E
Sbjct: 314 EVTIRNRYKEL 324
>gi|88603722|ref|YP_503900.1| transcription initiation factor IIB [Methanospirillum hungatei
JF-1]
gi|88189184|gb|ABD42181.1| Transcription initiation factor IIB (TFIIB) [Methanospirillum
hungatei JF-1]
Length = 337
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 146 ERNLAFALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 203
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ S P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 204 RQCSVPRTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 257
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ +
Sbjct: 258 QLKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGV 315
Query: 247 CEATLMKRLIEF 258
E T+ R E
Sbjct: 316 TEVTIRNRYKEL 327
>gi|154151850|ref|YP_001405468.1| transcription initiation factor IIB [Methanoregula boonei 6A8]
gi|189029854|sp|A7IAR4.1|TF2B_METB6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|154000402|gb|ABS56825.1| Transcription factor TFIIB, cyclin-related [Methanoregula boonei
6A8]
Length = 334
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + + + A Y AV +N +GR E V A+ LY AC
Sbjct: 143 ERNLAFALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 200
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + + ++ E+G Y + + L + L P ++ +F L
Sbjct: 201 RQCSVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLT 255
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ +
Sbjct: 256 LKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVT 313
Query: 248 EATLMKRLIEF 258
E T+ R E
Sbjct: 314 EVTIRNRYKEL 324
>gi|397779601|ref|YP_006544074.1| transcription initiation factor IIB [Methanoculleus bourgensis MS2]
gi|396938103|emb|CCJ35358.1| Transcription initiation factor IIB Short=TFIIB [Methanoculleus
bourgensis MS2]
Length = 337
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 12/198 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + + + A Y AV +N +GR E V A+ LY AC
Sbjct: 146 ERNLAFALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 203
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ S P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 204 RQCSVPRTLDEVAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 257
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ +
Sbjct: 258 NLKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGV 315
Query: 247 CEATLMKRLIEF-ENTDS 263
E T+ R E E DS
Sbjct: 316 TEVTIRNRYKELAEKLDS 333
>gi|448303109|ref|ZP_21493059.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445594116|gb|ELY48283.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 323
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 113/240 (47%), Gaps = 19/240 (7%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQSQLSGNF-----VRTIQSEYGA--SRERLMEKAFDDMR 79
K++ D ST + K+A G++ S +RT + S+ER +++A ++
Sbjct: 84 KMMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 143
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 144 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 201
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 198
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 202 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 253
Query: 199 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
R++L S +++ + +G+ P GL AA+Y +AL K +++D+ + I E T+ R E
Sbjct: 254 RELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRYKEL 313
>gi|448540715|ref|ZP_21623636.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549017|ref|ZP_21627793.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555808|ref|ZP_21631737.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445708868|gb|ELZ60703.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445713706|gb|ELZ65481.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717331|gb|ELZ69049.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 332
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 9/201 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 139 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSALYA 196
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ R P L + ++ EL Y + + L + +K DP ++ +F
Sbjct: 197 SARMAGTPRSLDELEKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASE 251
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L K I +G+ P GL AA+Y +AL K ++S++ +
Sbjct: 252 L--GLSDEAERQARQLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVAD 309
Query: 246 ICEATLMKRLIEFENTDSGSL 266
I E T+ R E G+L
Sbjct: 310 ISEVTIRNRYKELLEVQDGTL 330
>gi|448381827|ref|ZP_21561803.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
gi|445662908|gb|ELZ15671.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
Length = 341
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 11/201 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + + Y A+ + GR E V + LY
Sbjct: 149 SKERNLKQALGEIDRMASAL--GLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYA 206
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 207 AARQAGTPRSLDEIAAVSRVEKAEIARTYRYVVRELGLE-----VQPADPESYVPRFASD 261
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L ++ ARD+L++ K + +G+ P GL AA+Y +AL K +++D+ +
Sbjct: 262 LDLADETER---RARDLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVA 318
Query: 245 HICEATLMKRLIEFENTDSGS 265
I E T+ R E D G+
Sbjct: 319 SISEVTIRNRYKELLEADGGA 339
>gi|292655824|ref|YP_003535721.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448289811|ref|ZP_21480974.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448570851|ref|ZP_21639362.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448595749|ref|ZP_21653196.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|14195256|sp|Q9YGA5.1|TFB2_HALVD RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|5410473|gb|AAD43074.1|AF143693_1 transcription factor B [Haloferax volcanii]
gi|291372841|gb|ADE05068.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445581328|gb|ELY35689.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445722769|gb|ELZ74420.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445742203|gb|ELZ93698.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 9/201 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 139 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSALYA 196
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ R P L + ++ EL Y + + L + +K DP ++ +F
Sbjct: 197 SARMAGTPRSLDELEKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASE 251
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L K I +G+ P GL AA+Y +AL K ++S++ +
Sbjct: 252 L--GLSDEAERQARQLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVAD 309
Query: 246 ICEATLMKRLIEFENTDSGSL 266
I E T+ R E G+L
Sbjct: 310 ISEVTIRNRYKELLEVQDGTL 330
>gi|47213354|emb|CAF92977.1| unnamed protein product [Tetraodon nigroviridis]
Length = 165
Score = 61.6 bits (148), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 19 SQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRT------------IQSEYGA- 65
S +C D CG VLED+ +E FV+ + G S G FV + G
Sbjct: 22 SAVCTD-CGSVLEDNIIVSEVQFVEGSGGVSSAVGQFVSADGPVKAPLLGSGFHTSVGKE 80
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SR + ++ ++ + + L + + + A F+ + V+++ T+GR+TE V A+CLYL
Sbjct: 81 SRAQTLQGGKRQIQHLGSQLQLNQ--HCLDTAFNFFKMVVSKHLTRGRKTEHVIAACLYL 138
Query: 126 ACRQKSKP 133
CR + P
Sbjct: 139 VCRTEGTP 146
>gi|374630349|ref|ZP_09702734.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
gi|373908462|gb|EHQ36566.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
Length = 335
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 144 ERNLAFALSELDRMASAL--GLPRNVRETAAVVYRDAVEKNLIRGRSIEGVAAAALYAAC 201
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ + P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 202 RQCNVPRTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 255
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ +
Sbjct: 256 TLKG--EVQSRAVEILRQAGEKELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGV 313
Query: 247 CEATLMKRLIEF 258
E T+ R E
Sbjct: 314 TEVTIRNRYKEL 325
>gi|448704008|ref|ZP_21700548.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445796624|gb|EMA47125.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 344
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 11/215 (5%)
Query: 46 AGQSQLSGNFVRTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGI 103
+G+ + N +RT + + +RER +++A ++ +M +AL + S+ A Y
Sbjct: 125 SGEKRAQLNRLRTWNERFTSKDARERNLKQALGELERMASALGL--SEPCRETAAVIYRR 182
Query: 104 AVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163
AV GR E + + LY A RQ+ P F + ++ Y L L +
Sbjct: 183 AVEEELLPGRSIEAMTTASLYAAARQQGTPRTFSAFESVSRVDDESTKRAYRYLSSELEL 242
Query: 164 ADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAA 223
+ +P +L +F L + ARD+L + K + + G+ P+GL AA
Sbjct: 243 E-----IAPPEPEQYLRQFASDLAVSDETERL--ARDVLEAAKAEELHIGKSPAGLTAAA 295
Query: 224 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+Y + + ++ I + + + T+ R E
Sbjct: 296 IYAAGRLTNDRVTQETIDETTGVSKFTVRNRYREL 330
>gi|433590514|ref|YP_007280010.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433305294|gb|AGB31106.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 95/194 (48%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 190 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 244
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL A++Y +AL K +++++ +
Sbjct: 245 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVA 301
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 302 SISEVTIRNRYKEL 315
>gi|448383049|ref|ZP_21562478.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445660229|gb|ELZ13026.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 325
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 95/194 (48%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 190 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 244
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL A++Y +AL K +++++ +
Sbjct: 245 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVA 301
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 302 SISEVTIRNRYKEL 315
>gi|47216765|emb|CAG03769.1| unnamed protein product [Tetraodon nigroviridis]
Length = 161
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 21/130 (16%)
Query: 23 CDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEYGA----------------S 66
C CG VLED+ +E FV+ G S G FV SE G S
Sbjct: 25 CTGCGSVLEDNVIVSEVEFVETGGGASHAVGRFV---SSEAGGAVMSFGDSHLGNIGAES 81
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
R + + +A + + + L + + + A FY +A+ ++ T+GR+ V A+C+Y+
Sbjct: 82 RAQTLARARNSINTLGVQLQM--NKHCLDTAFNFYKMALTKHLTRGRKASHVIAACIYMV 139
Query: 127 CRQKSKPFLL 136
CR + P +L
Sbjct: 140 CRTEGTPRIL 149
>gi|386875751|ref|ZP_10117910.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806507|gb|EIJ65967.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 304
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 100/238 (42%), Gaps = 25/238 (10%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQ 80
++ D ST + A LS + TI+ S+ A +R + +A D+ +
Sbjct: 68 MIHDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQALSDLNK 127
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+K+ +++ + ++ A Y A+ + +GR + A+ LY ACR P L D S
Sbjct: 128 LKDKVSVPAN--VLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLKDVS 185
Query: 141 NYLNINVYELGAVYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 196
+ N+ ++ Y L L + D + ++ + + + T R
Sbjct: 186 DAANVKRKDIARCYRLLHHELELKMPVVDSIQCIARISSKLEISEKTKRY---------- 235
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
A +L + + G+ P GL ALY+S + +G+ ++ D+ + + E T+ R
Sbjct: 236 -AVKVLKDAQERKESAGKDPMGLAATALYLSCVKNGVSITQRDLAEAAGVTEVTIRNR 292
>gi|448322082|ref|ZP_21511555.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602070|gb|ELY56050.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R + P L + + ++ E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEVAAVSRVDRMEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELD 244
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
LP ++V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + +
Sbjct: 245 LP---EEVQLKANEIINTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQV 301
Query: 247 CEATLMKRLIE 257
E T+ R E
Sbjct: 302 TEVTIRNRYQE 312
>gi|448677609|ref|ZP_21688799.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448687989|ref|ZP_21693957.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445773284|gb|EMA24317.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779780|gb|EMA30696.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 322
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + + Y A+ + GR E V S LY
Sbjct: 131 SKERNLKQALGEIDRMASALGLPQN--VRETSSVIYRRALGDDLLPGRSIEGVATSALYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + + + EL Y + + L + ++ DP +L +F
Sbjct: 189 AARMAGNPRSLDEMARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISD 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G +++ ARD++ ++ + +G+ P G+ AA+Y +AL K ++S + +
Sbjct: 244 L--GLSEETQRQARDLVEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVAD 301
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 302 ISEVTIRNRYKEL 314
>gi|374723591|gb|EHR75671.1| transcription initiation factor TFIIB [uncultured marine group II
euryarchaeote]
Length = 308
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 109/238 (45%), Gaps = 17/238 (7%)
Query: 29 VLEDHNFSTEATFV-KNAAGQ---SQLSGNFVRT----IQSEYGASRERLMEKAFDDMRQ 80
+L D ST+ + K+ +G+ S+ F R +S + ER + A ++ +
Sbjct: 70 MLHDKGLSTDIDWQNKDYSGKTINSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 129
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M + L + +S + A Y AV + +GR E V A+ LY ACRQ P L +
Sbjct: 130 MASRLELPKS--VREAAAVNYKKAVDKRLIRGRSIEGVAAASLYAACRQCGVPRTLDEIG 187
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
E+G Y + + L + + P ++ +F L G + +V A +
Sbjct: 188 QASRTGRKEIGRTYRFMVRELKMK-----IMPTGPEDYISRFCSGL--GLDAEVEAKAYE 240
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
++ + + +T+GR P+G+ + +Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 241 LIKAAQEKELTSGRGPTGIAASIIYIASVLCGKRRTQREVAEVAGVTEVTIRNRYKEL 298
>gi|448332083|ref|ZP_21521331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445627928|gb|ELY81242.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 354
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 95/194 (48%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 161 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 218
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 219 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 273
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL A++Y +AL K +++++ +
Sbjct: 274 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVA 330
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 331 SISEVTIRNRYKEL 344
>gi|14548146|gb|AAK66803.1|U40238_26 transcription factor TFIIB [uncultured crenarchaeote 4B7]
Length = 211
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 17/199 (8%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S+ +S ++ + +A +M ++K+ L++ + ++ A Y A+ + KGR + +
Sbjct: 14 RSQAHSSVDKNLRQALSEMDKLKDKLSL--TGAVIEKAAYIYRKAIEKKLVKGRSIQGLV 71
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDP 175
A+C+Y ACR P L D +N +NI ++ Y + + L +AD N + ++
Sbjct: 72 AACVYAACRDTETPRTLGDVANGINIRRKDVARCYRLIFRELDLKVPVADPINGIPRIAS 131
Query: 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 235
SI L + T R A +IL K+ + G+ P+GL AALY++ +T G
Sbjct: 132 SIGLGEKTKR-----------KAVEILRKAKKIGVVAGKDPTGLAAAALYLACITEGGNK 180
Query: 236 SKSDIVKIVHICEATLMKR 254
++ +I + + E T+ R
Sbjct: 181 TQKEISEASGVTEVTIRNR 199
>gi|307354313|ref|YP_003895364.1| transcription factor TFIIB cyclin-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307157546|gb|ADN36926.1| Transcription factor TFIIB cyclin-related protein [Methanoplanus
petrolearius DSM 11571]
Length = 335
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 52/297 (17%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLE-------------DHN-------FSTEATFVK 43
C C H ++L C CG VLE DH+ TF
Sbjct: 39 CPECGSRQLIHDYERAELTCQNCGLVLEEEFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 98
Query: 44 NAAGQSQL-----SGNFVRTIQSEYGA----------------SRERLMEKAFDDMRQMK 82
+ G S + ++ R I S+ A + ER + A ++ +M
Sbjct: 99 HDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMA 158
Query: 83 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
+AL G + A Y AV +N +GR E V A+ LY ACRQ S P L + +
Sbjct: 159 SAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIAEV 216
Query: 143 LNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y +I+ E + L P ++ +F L G +V A +I
Sbjct: 217 SRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLNLKG--EVQSRAVEI 268
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
L +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+ R E
Sbjct: 269 LRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKEL 325
>gi|448329711|ref|ZP_21519008.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613635|gb|ELY67331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 326
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 191 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 245
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL AA+Y +AL K +++++ ++
Sbjct: 246 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVA 302
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 303 SISEVTIRNRYKEL 316
>gi|448336058|ref|ZP_21525172.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
gi|445630482|gb|ELY83744.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
Length = 176
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 11/175 (6%)
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL + S + VA Y A++ + +GR E V SCLY CRQ+ P L + +
Sbjct: 1 MASALGVPRS--VREVASVIYRQALSNDLIRGRSIEGVATSCLYAGCRQEGIPRSLDEVT 58
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
+ E+G Y YIA E ++ +K DP ++ +F L G K+ A
Sbjct: 59 EVSRVGKKEIGRTY------RYIAKELSLEMKPADPKEYVPRFCSDLEVGEEVKM--KAI 110
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
+I+ + +G+ P+G AA+Y ++L K ++ +I ++ + E T+ R
Sbjct: 111 EIIDESAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQKEIAEVAQVTEVTIRNR 165
>gi|399574277|ref|ZP_10768036.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240109|gb|EJN61034.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 324
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + A Y A+A + GR E V + LY
Sbjct: 131 SKERNLKQALGEIDRMASALGLPQA--VRETASVIYRRALAEDLLPGRSIEGVATAALYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ RQ P L + ++ ++ EL Y + + L + ++ DP ++ +F
Sbjct: 189 SARQAGTPRSLDEIASVSRVDKMELTRTYRYVVRELKLE-----IQPADPEQYVPRFASD 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR++L + K I +G+ P GL AA+Y +AL K ++S + + +
Sbjct: 244 L--GLSDEAERRARELLRTAKEAGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSSVAN 301
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 302 ISEVTIRNRYKEL 314
>gi|126178423|ref|YP_001046388.1| transcription initiation factor IIB [Methanoculleus marisnigri JR1]
gi|189029857|sp|A3CSQ6.1|TF2B_METMJ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|125861217|gb|ABN56406.1| Transcription initiation factor IIB (TFIIB) [Methanoculleus
marisnigri JR1]
Length = 337
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL G + A Y AV +N +GR E V A+ LY AC
Sbjct: 146 ERNLAFALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 203
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ S P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 204 RQCSVPRTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGL 257
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ +
Sbjct: 258 NLKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGV 315
Query: 247 CEATLMKRLIEF 258
E T+ R E
Sbjct: 316 TEVTIRNRYKEL 327
>gi|448321963|ref|ZP_21511437.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602545|gb|ELY56520.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 123/297 (41%), Gaps = 54/297 (18%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLE-------------------------------- 31
C C P +++L C+ CG +LE
Sbjct: 27 CPECDSQALLRSPDETELSCEDCGLLLEEKRIDHGPDWRAFTHQEQQKKSRVGAPTTRTM 86
Query: 32 -DHNFSTEATFV-KNAAGQSQLSG------NFVRTIQSEYGASR--ERLMEKAFDDMRQM 81
D +T + K+A G+S LS N +R Q+ S ER ++ A + +M
Sbjct: 87 HDKGLTTSIDWKNKDAHGRS-LSADKRSQMNRLRKWQTRIRTSDAGERNLQFALSETDRM 145
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
+ L I S + VA Y A+ R+ +GR E V LY ACR + P L + +
Sbjct: 146 ASGLGIPRS--VREVASVLYRRALERDLIQGRSIEGVATGTLYAACRLEGMPRSLEEVAM 203
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
++ E+G Y YIA E + K VDP ++ +F L + V A +
Sbjct: 204 VSRVDRKEIGRTYR------YIAKELELGTKPVDPKQYVPRFCSEL--ELSPTVQAKASE 255
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 257
I+ + + I +G+ P+G AA+Y+SAL K ++ ++ + + E T+ KR E
Sbjct: 256 IIDTTAKKGILSGKSPTGYAAAAIYISALFCDEKRTQREVADVSQVTEVTIRKRYQE 312
>gi|336121697|ref|YP_004576472.1| transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
gi|334856218|gb|AEH06694.1| Transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
Length = 336
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y + +
Sbjct: 175 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEISRVDRKEIGRTYRFISR 234
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 235 ELKIR-----LAPTNPIDYVPRFASELKLPG---EVESKAIAILQKANEKGLTSGRGPTG 286
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 287 VAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKEL 326
>gi|448308419|ref|ZP_21498296.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593707|gb|ELY47876.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 321
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A++ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALSEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + + + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEVAAVSRVERMEIGRTYRYISQELSLE-----MEPVDPKKYVPRFCSEL- 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + +
Sbjct: 244 -DLSEEVQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVT 302
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 303 EVTIRNRYQE 312
>gi|448401933|ref|ZP_21571844.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445665991|gb|ELZ18662.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 325
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + EL Y + + L + +K DP ++ +F
Sbjct: 190 AARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 244
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL A++Y +AL K +++++ ++
Sbjct: 245 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSEVA 301
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 302 SISEVTIRNRYKEL 315
>gi|407464963|ref|YP_006775845.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048151|gb|AFS82903.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 100/238 (42%), Gaps = 25/238 (10%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQ 80
++ D ST + A LS + TI+ S+ A +R + +A D+ +
Sbjct: 70 MIHDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQALSDLNK 129
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+K+ ++I + ++ A Y A+ + +GR + A+ LY ACR P L D +
Sbjct: 130 LKDKVSIPAN--VLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLKDVA 187
Query: 141 NYLNINVYELGAVYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 196
+ N+ ++ Y L L + D + ++ + + + T R
Sbjct: 188 DAANVKRKDIARCYRLLHHELELKMPVVDSIQCIARISSKLEISEKTKRY---------- 237
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
A +L + + G+ P GL ALY+S + +G+ ++ D+ + + E T+ R
Sbjct: 238 -AVKVLKEAQERKESAGKDPMGLAATALYLSCVKNGVSITQRDLAEAAGVTEVTIRNR 294
>gi|302692026|ref|XP_003035692.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
gi|300109388|gb|EFJ00790.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
Length = 331
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 89/213 (41%), Gaps = 6/213 (2%)
Query: 40 TFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
T + G S ++ R G+ ER + AF D+ + + ++ I +AK+
Sbjct: 89 TVISFRDGGSGVARELQRAATRAQGSRSERNILTAFRDISTRCDQFALPKT--ISDIAKQ 146
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y KG+ E + A+C+++ACRQ P +F + +++ LG +
Sbjct: 147 LYKRVHDEGVLKGKPQEAITAACIFIACRQAHVPRTFREFCDLTHVSKKLLGFCCRTISL 206
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
+A ++ P L ++ ++L LP + +C DI+ + I GR P
Sbjct: 207 TFNLAPGASTNPSAGPENILPRYFNQLDLPTYVQSIC---HDIIVEARNHGIADGRSPVS 263
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
+ G A+Y + G S +I + E T+
Sbjct: 264 IAGGAIYFTCHLLGKPKSLREISSAASVSEGTI 296
>gi|161528848|ref|YP_001582674.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340149|gb|ABX13236.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 118/278 (42%), Gaps = 39/278 (14%)
Query: 2 VWCSSCARHV----TGHRP--------YDSQLCCDRCGKVLEDHNFSTEAT-FVKNAAGQ 48
++CS+C V RP D D+ D ST F K++AG
Sbjct: 35 IFCSNCGIVVEEKTNDRRPERAFANSTTDKSHTGDKTSLTRHDRGLSTVINPFDKDSAG- 93
Query: 49 SQLSGNFVRTI--------QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRF 100
S LS + ++ +S + +R +++A ++ +MK L++ SD I A
Sbjct: 94 SPLSASMKSSMTRLRKWDNRSRIKTNDDRNLQQALLELSKMKEKLSL--SDAIAEKASYI 151
Query: 101 YGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160
Y A+ + KGR + A+CLY ACR+ P L + + + I E+ A Y + +
Sbjct: 152 YRKALEKKLVKGRSIASLVAACLYAACRESEAPRTLREVAASIGIKRKEISATYRLIFKE 211
Query: 161 L----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 216
L + D + + ++ + L + T R A IL ++ ++ G+ P
Sbjct: 212 LDLKMPVIDSVSCIAKIASNAELSEKTKRY-----------AIKILKKAEKQNMSAGKHP 260
Query: 217 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
GL +ALY++++ ++ +I I E T+ R
Sbjct: 261 MGLAASALYLASIDLEEFRTQKEIADAAGITEVTVRNR 298
>gi|289937651|ref|YP_003482253.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|448283863|ref|ZP_21475128.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|289533342|gb|ADD07691.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445571958|gb|ELY26500.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
Length = 321
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 13/192 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +A+ + S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASAMGVPRS--VREVASVLYRRALEEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R + P L + + + E+G Y YI+ E + ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEIAAVSRVERMEIGRTY------RYISKELGLEMQPVDPKKYVPRFCSEL 243
Query: 187 -LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
LP +V A +I+ + + +G+ P+G AA+Y +AL K ++ ++ +
Sbjct: 244 ELP---DEVQSKANEIIDTTAEKGMLSGKSPTGYAAAAIYAAALLCNKKKTQREVADVAQ 300
Query: 246 ICEATLMKRLIE 257
+ E T+ R E
Sbjct: 301 VTEVTIRNRYQE 312
>gi|448589388|ref|ZP_21649547.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735816|gb|ELZ87364.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 288
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 9/201 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
++ + RER AF ++R++ +AL++ + I A + A + +GR E
Sbjct: 97 RARISSKRERNQVYAFTEIRRLTSALSL--PNHIREQACALFESAQNEDLLRGRSLEGFA 154
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+C+Y ACR + + + E A Y L + L + + DP+ ++
Sbjct: 155 AACVYAACRVAGIARSVEEVCDVAKATEAEHHAAYRALNRDLGLP-----VAPTDPTEYI 209
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F +L ++ V AR+ +A D + G+ P G+ A LY +A G +++D
Sbjct: 210 PRFATKL--DLDRDVERRAREYVADAHEDGLVAGKNPCGVAAACLYTAARDVGADCTQAD 267
Query: 240 IVKIVHICEATLMKRLIEFEN 260
+ + TL K +E +
Sbjct: 268 AADVADVTPVTLRKTYVELRD 288
>gi|448333191|ref|ZP_21522402.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
gi|445623529|gb|ELY76934.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
Length = 370
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 11/201 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + + Y A+ + GR E V + LY
Sbjct: 178 SKERNLKQALGEIDRMASAL--GLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYA 235
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + E+ Y + + L + ++ DP ++ +F
Sbjct: 236 AARQAGTPRSLDEISAVSRVEKAEIARTYRYVVRELGLE-----VQPADPESYVPRFASD 290
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L ++ A D+L++ K + +G+ P GL AA+Y +AL K +++D+ +
Sbjct: 291 LDLADETER---RAHDLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVA 347
Query: 245 HICEATLMKRLIEFENTDSGS 265
I E T+ R E D G+
Sbjct: 348 SISEVTIRNRYKELLEADGGA 368
>gi|297619914|ref|YP_003708019.1| transcription factor TFIIB cyclin-like protein [Methanococcus
voltae A3]
gi|297378891|gb|ADI37046.1| Transcription factor TFIIB cyclin-related protein [Methanococcus
voltae A3]
Length = 337
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 176 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 231
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL + +T+GR P+
Sbjct: 232 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILKDAGKKGLTSGRGPT 286
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 287 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 327
>gi|433591588|ref|YP_007281084.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433306368|gb|AGB32180.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 341
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 11/201 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + + Y A+ + GR E V + LY
Sbjct: 149 SKERNLKQALGEIDRMASAL--GLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYA 206
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + E+ Y + + L + ++ DP ++ +F
Sbjct: 207 AARQAGTPRSLDEISAVSRVEKAEIARTYRYVVRELGLE-----VQPADPESYVPRFASD 261
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L ++ A D+L++ K + +G+ P GL AA+Y +AL K +++D+ +
Sbjct: 262 LDLADETER---RAHDLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVA 318
Query: 245 HICEATLMKRLIEFENTDSGS 265
I E T+ R E D G+
Sbjct: 319 SISEVTIRNRYKELLEADGGA 339
>gi|349805805|gb|AEQ18375.1| putative brf1 subunit of rna polymerase iii transcription
initiation factor iiib [Hymenochirus curtipes]
Length = 101
Score = 60.8 bits (146), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 51 LSGNFVRTIQSEYGASRERLMEKAFDDMRQMKN-ALNIGESDEIVHVAKRFYGIAVARNF 109
L G F ++ E SR + ++ RQ+ N + + + + A F+ +AV+++
Sbjct: 7 LGGGFHTSVGKE---SRAQTLQNG---KRQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHL 60
Query: 110 TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 150
T+GR+ V A+CLYL CR + P +L+D S+ L +NVY L
Sbjct: 61 TRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVL 101
>gi|355572234|ref|ZP_09043416.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
gi|354824950|gb|EHF09189.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
Length = 338
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + + + A Y AV +N +GR E V A+ LY AC
Sbjct: 147 ERNLAFALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAAC 204
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + + ++ E+G Y + + L + L P ++ +F L
Sbjct: 205 RQCSVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLN 259
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ +
Sbjct: 260 LKG--EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVT 317
Query: 248 EATLMKRLIEF 258
E T+ R E
Sbjct: 318 EVTIRNRYKEL 328
>gi|448579035|ref|ZP_21644351.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445724388|gb|ELZ76021.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 288
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 9/201 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
++ + RER AF ++R++ +AL++ + I A + A + +GR E
Sbjct: 97 RARISSKRERNQVYAFTEIRRLTSALSL--PNHIREQACALFESAQNEDLLRGRSLEGFA 154
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+C+Y ACR + + + E A Y L + L + + DP+ ++
Sbjct: 155 AACVYAACRVAGIARSVEEVCDVAKATESEHHAAYRALNRDLGLP-----VAPTDPTEYI 209
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F +L ++ V AR+ +A + D I G+ P G+ A LY +A G +++D
Sbjct: 210 PRFATKL--DLDRDVERRAREYVADAREDGIVAGKNPCGVAAACLYTAARDVGADCTQAD 267
Query: 240 IVKIVHICEATLMKRLIEFEN 260
+ + TL K + +
Sbjct: 268 AADVADVTPVTLRKTYVALRD 288
>gi|435846952|ref|YP_007309202.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433673220|gb|AGB37412.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSALYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S + E+ Y + + L + ++ DP ++ +F
Sbjct: 191 AARQAGTPRSLDEISAVSRVGKDEIARTYRYVIRELGLE-----VQPADPESYVPRFASE 245
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L + + AR +L + K + + +G+ P GL AA+Y +AL K +++D+ ++
Sbjct: 246 LEL--SDETERRARSLLQTAKEEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVAS 303
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 304 ISEVTIRNRYHEL 316
>gi|448352384|ref|ZP_21541172.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
gi|445643145|gb|ELY96198.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
Length = 321
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 13/192 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y + + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRTLDEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R + P L + + ++ E+G Y YI+ E ++ ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEIAAVSRVDRMEIGRTYR------YISKELSLEMQPVDPKKYVPRFCSEL 243
Query: 187 -LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
LP +V A +I+ + + +G+ P+G AA+Y +AL K ++ ++ +
Sbjct: 244 ELP---DEVQSKANEIIDTTAEKGLLSGKSPTGYAAAAIYAAALLCNKKKTQREVADVAQ 300
Query: 246 ICEATLMKRLIE 257
+ E T+ R E
Sbjct: 301 VTEVTIRNRYQE 312
>gi|448360606|ref|ZP_21549237.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
gi|445653219|gb|ELZ06091.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
Length = 271
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 82 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAAC 139
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R + P L + + +N E+G Y + Q L + ++ V+P ++ +F L
Sbjct: 140 RMEGIPRSLDEVAAVSRVNRMEIGRTYRYISQELGLE-----MEPVNPKKYVPRFCSELD 194
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
LP ++V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + +
Sbjct: 195 LP---EEVQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQKEVADVAQV 251
Query: 247 CEATLMKRLIE 257
E T+ R E
Sbjct: 252 TEVTIRNRYQE 262
>gi|448349399|ref|ZP_21538241.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445640642|gb|ELY93729.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 318
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 22/240 (9%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQSQLSG-----NFVRTIQSEYGA--SRERLMEKAFDDMR 79
+ + D +T+ + K+A G+S S N +R QS + ER ++ A ++
Sbjct: 83 QTMHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTRDAGERNLQFALSEID 142
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + S + V Y A+ + +GR E V + LY CRQ+ P L +
Sbjct: 143 RMASALGVPRS--VREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEDIPRSLEEI 200
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDT 197
+ I E+ Y YI++E + L +DP ++ +F+ +L LP ++V
Sbjct: 201 TEVSRIERIEVSRTYR------YISNELGLELLPIDPKQYVPRFSSKLDLP---QEVEAK 251
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 257
A +I+ D + +GR PSG AA+Y +AL K ++ ++ + + E T+ R E
Sbjct: 252 ANEIIEETA-DPLLSGRGPSGFAAAAIYAAALLCNEKRTQKEVADVAQVTEVTIRNRYQE 310
>gi|448613121|ref|ZP_21663001.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740018|gb|ELZ91524.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 345
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + Y A+ + GR E V S LY
Sbjct: 152 SKERNLKQALGEIDRMASALGLPEN--VRETTSVIYRRALNDDLLPGRSIEGVATSSLYA 209
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 210 AARMADTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASE 264
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L + K + +G+ P GL AA+Y ++L K +++++ + +
Sbjct: 265 L--GISDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSDVAN 322
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 323 ISEVTIRNRYHEL 335
>gi|448371933|ref|ZP_21557052.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445647024|gb|ELZ00005.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 318
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 22/240 (9%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQSQLSG-----NFVRTIQSEYGA--SRERLMEKAFDDMR 79
+ + D +T+ + K+A G+S S N +R QS + ER ++ A ++
Sbjct: 83 QTMHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTKDAGERNLQFALSEID 142
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + S + V Y A+ + +GR E V + LY CRQ+ P L +
Sbjct: 143 RMASALGVPRS--VREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEI 200
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDT 197
+ I E+ Y YI++E + L +DP ++ +F+ +L LP ++V
Sbjct: 201 TEVSRIERIEVSRTYR------YISNELGLELLPIDPKQYVPRFSSKLNLP---QEVEAK 251
Query: 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 257
A +I+ D + +GR PSG AA+Y +AL K ++ ++ + + E T+ R E
Sbjct: 252 ANEIIEETA-DPLLSGRGPSGFAAAAIYAAALLCNEKRTQKEVADVAQVTEVTIRNRYQE 310
>gi|150402961|ref|YP_001330255.1| transcription initiation factor IIB [Methanococcus maripaludis C7]
gi|189029856|sp|A6VI28.1|TF2B_METM7 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150033991|gb|ABR66104.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C7]
Length = 339
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|433638603|ref|YP_007284363.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448373609|ref|ZP_21557695.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433290407|gb|AGB16230.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445661561|gb|ELZ14344.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 317
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 101/258 (39%), Gaps = 52/258 (20%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLED------------------------------- 32
C C H P +L C+ CG VL D
Sbjct: 21 CPDCETETVVHDPDRRELVCEECGLVLSDEPIDYGPEWRAFDAREHEELSRVGAPLTQSM 80
Query: 33 HNFSTEATF---VKNAAGQSQLSGNF-----VRTIQSEYGASR--ERLMEKAFDDMRQMK 82
H+ T ++A G S +G +R Q ER ++ A ++ +M
Sbjct: 81 HDRGLTTTIDWRNRDANGHSMDAGKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMV 140
Query: 83 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142
+AL + + + A Y A+ R+ +GR E V S LY++CR+ P L + +
Sbjct: 141 SALGVPKP--VKETASVIYRQALDRDLIRGRSIEGVATSALYMSCRKDDIPRSLEEVTAV 198
Query: 143 LNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
++ E+G Y YIADE ++ L+ +P F+ +F L + +V TA DI
Sbjct: 199 SRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--DVSSEVETTAIDI 250
Query: 202 LASMKRDWITTGRKPSGL 219
+ + +G+ P+G
Sbjct: 251 IDETTELGLHSGKSPTGF 268
>gi|448348263|ref|ZP_21537115.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445643361|gb|ELY96413.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 271
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 82 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAAC 139
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R + P L + + +N E+G Y + Q L + ++ V+P ++ +F L
Sbjct: 140 RMEGIPRSLDEVAAVSRVNRMEIGRTYRYISQELGLE-----MEPVNPKKYVPRFCSELD 194
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
LP ++V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + +
Sbjct: 195 LP---EEVQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQKEVADVAQV 251
Query: 247 CEATLMKRLIE 257
E T+ R E
Sbjct: 252 TEVTIRNRYQE 262
>gi|393795828|ref|ZP_10379192.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 306
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 14/237 (5%)
Query: 30 LEDHNFSTEATFVKNAAG-----QSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNA 84
+ D ST K+++G +++ N +RT + + KAF + MK
Sbjct: 74 MHDKGLSTVIGINKDSSGNALSSKTKYEFNRLRTWDQRSKSRSTVALSKAFTLLNAMKTK 133
Query: 85 LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144
L I D ++ A Y AV T+GR + ++ LY ACR+ + P L D ++ N
Sbjct: 134 LGI--PDNVIENAAYIYRKAVNSKLTRGRTMASLISASLYAACRENNIPRTLDDIADAGN 191
Query: 145 INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILAS 204
I L + + L + L Q D S F+ K ++ + +K A DIL
Sbjct: 192 IERRILSRDLRTIIKKLGLK-----LNQYDTSSFISKISNNM--NLKEKTKRDAFDILKR 244
Query: 205 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261
+ IT G+ P A+LY++ + + K S+ + + T+ R+ + T
Sbjct: 245 CELKEITAGKHPVAQAAASLYIACMINNEKISQKKFSSEAGVSDVTIRNRVTLIKKT 301
>gi|159905293|ref|YP_001548955.1| transcription initiation factor IIB [Methanococcus maripaludis C6]
gi|226703638|sp|A9A8Q0.1|TF2B_METM6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|159886786|gb|ABX01723.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C6]
Length = 339
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|448562505|ref|ZP_21635463.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445718823|gb|ELZ70507.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 332
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 17/247 (6%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQS-----QLSGNFVRTIQSEYGA--SRERLMEKAFDDMR 79
K++ D ST + K+A G+S + +RT + S+ER +++A ++
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + E+ + A Y A+ + GR E V + LY + R P L +
Sbjct: 153 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSLDEL 210
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
++ EL Y + + L + +K DP ++ +F L G + + AR
Sbjct: 211 EKVSRVDKMELTRTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GLSDEAERQAR 263
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259
+L K I +G+ P GL AA+Y +AL K ++S++ + I E T+ R E
Sbjct: 264 QLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELL 323
Query: 260 NTDSGSL 266
G+L
Sbjct: 324 EVQDGTL 330
>gi|359417747|ref|ZP_09209816.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
gi|358031840|gb|EHK00675.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 306
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 19/200 (9%)
Query: 33 HNFSTEATFVKNAAGQSQLSGN------FVRTIQSEYGASRERLMEKAFDDMRQMKNALN 86
H+ K + ++SGN +R S++R + A ++ M + LN
Sbjct: 118 HDMGVSTEIGKGSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMISNLN 177
Query: 87 IGESDEIVHV-AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145
+ ES VH R Y AV + +GR E + ++ +Y+ R++ P L + S+ I
Sbjct: 178 LPES---VHEETARLYEKAVDQGLVRGRSMESIISALIYIVARKQGTPRTLDEISDASGI 234
Query: 146 NVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILAS 204
E+G Y Y+A E + + P ++ +F +L G +V AR+IL
Sbjct: 235 EKREIGRAY------RYVARELGLRILPAKPQDYVPRFAGKLQLSG--EVQARARNILKE 286
Query: 205 MKRDWITTGRKPSGLCGAAL 224
+ + +G+ P+GL AAL
Sbjct: 287 ARERDLLSGKGPTGLAAAAL 306
>gi|448301022|ref|ZP_21491017.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584536|gb|ELY38851.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 321
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + + + E+G Y + Q L + ++ VDP ++ +F L
Sbjct: 190 RMEGIPRSLDEVAAVSRVERMEIGRTYRYISQELSLE-----MEPVDPKKYVPRFCSEL- 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + +
Sbjct: 244 -SLSEEVQAKANEIIDTTAEKGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVT 302
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 303 EVTIRNRYQE 312
>gi|57642222|ref|YP_184700.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|14195235|sp|P58109.1|TF2B2_PYRKO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|12381905|dbj|BAB21262.1| Tk-TFB [Thermococcus kodakaraensis]
gi|57160546|dbj|BAD86476.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 306
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 113/238 (47%), Gaps = 17/238 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSG---NFVRTIQSEYGASR-----ERLMEKAFDDMRQ 80
++ D ST+ + +Q++G N +R ++ R ER + A ++ +
Sbjct: 68 MIHDKGLSTDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSELDR 127
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M L + + VA Y AV + +GR E + ++ LY ACR + P L + +
Sbjct: 128 MAAQLRL--PRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIA 185
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
+ ++ E+G Y + + L + L+ P ++ +F D L G + + A++
Sbjct: 186 SVSKVSKKEIGRSYRFMARGLGLN-----LRPTSPIEYVDRFGDAL--GVSARTKKRAKE 238
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
IL + IT+G+ P+GL AALY++AL G K ++ ++ ++ H+ E T+ R E
Sbjct: 239 ILNEAIKRGITSGKGPTGLAAAALYIAALLEGEKKTQREVAEVAHVTEVTVRNRYKEL 296
>gi|336254453|ref|YP_004597560.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338442|gb|AEH37681.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 320
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL G D + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSAL--GVPDPVKETASVIYRRALEKDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE + L+ +P F+ +F L
Sbjct: 184 RKEDIPRSLEEVTSVSRVDQREIGRTY------RYIADELGINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G K V A +I+ + +G+ P+G
Sbjct: 238 DVG--KDVETKAVEIIDETTEQGLHSGKSPTGF 268
>gi|448305704|ref|ZP_21495633.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445588162|gb|ELY42408.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 325
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 9/201 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPKN--VRETASVIYRRALEEDLLPGRSIEGVATSALYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 191 AARQAGTPRSLDEIAAVSRVEKDEIARTYRYVIRELGLE-----VQPADPESYVPRFASD 245
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L + + AR +L+S K I +G+ P GL AA+Y +AL K +++D+ +
Sbjct: 246 L--DLSDETERRARSLLSSAKEQGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVAS 303
Query: 246 ICEATLMKRLIEFENTDSGSL 266
I E T+ R E + G L
Sbjct: 304 ISEVTIRNRYHELLEAEDGGL 324
>gi|409096766|ref|ZP_11216790.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 303
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M A+ +G + A Y AV + +GR E + ++ LY AC
Sbjct: 112 ERNLAFALSELDRM--AVQMGLPKRVKEQAAVLYRKAVMKKLIRGRSIEGMVSAALYAAC 169
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + + + + E+G Y + + L + N+L P ++ +F D L
Sbjct: 170 RMEGIPRTLDEIARFSKVTKKEIGRSYRFMARGLGL----NLL-PTSPIDYVDRFGDAL- 223
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
G + + AR+IL R IT+G+ P+GL AALY+++L G K ++ ++ ++ ++
Sbjct: 224 -GVSARTKKRAREILQEAIRVGITSGKGPTGLAAAALYLASLLEGEKKTQREVAEVANVT 282
Query: 248 EATLMKRLIEF 258
E T+ R E
Sbjct: 283 EVTVRNRYKEL 293
>gi|359417944|ref|ZP_09209980.1| transcription initiation factor IIB, partial [Candidatus
Haloredivivus sp. G17]
gi|358031705|gb|EHK00573.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 201
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 97/195 (49%), Gaps = 13/195 (6%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHV-AKRFYGIAVARNFTKGRRTEQVQASCLY 124
S++R + A ++ M + LN+ ES VH R Y AV + +GR E + ++ +Y
Sbjct: 3 SKDRNLGFALSELNSMISNLNLPES---VHEETARLYEKAVDQGLVRGRSMESIISALIY 59
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFT 183
+ R++ P L + S+ I E+G Y Y+A E + + P ++ +F
Sbjct: 60 IVARKQGTPRTLDEISDASGIEKREIGRAYR------YVARELGLRILPAKPQDYVPRFA 113
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
+L G +V AR+IL + + +G+ P+GL AALY++A+ G K ++ ++ +
Sbjct: 114 GKLQLSG--EVQARARNILKEARERDLLSGKGPTGLAAAALYIAAVLEGEKRTQREVADV 171
Query: 244 VHICEATLMKRLIEF 258
V + E T+ R E
Sbjct: 172 VGVTEVTIRNRYKEL 186
>gi|110669504|ref|YP_659315.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627251|emb|CAJ53741.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 314
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 13/187 (6%)
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RER AF ++R++ AL++ + +I A + A + + +GR E A+C+Y A
Sbjct: 123 RERNQVYAFTEIRRLTGALSLPK--QIRDDACSLFRSAQSEDLLRGRSLEGFAAACVYAA 180
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + + ++ E A Y L + L + + +DP+ +L +F L
Sbjct: 181 CRVAGVARTIEEITDIAKATSAEQRAAYTALNRELGLP-----IGPIDPAQYLPRFASEL 235
Query: 187 -LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
LP ++ C+ I A I GR PSG+ A LY +A G + ++ I
Sbjct: 236 ELPSNIERRACEYISMITA----QGIGAGRNPSGVAAACLYTAARDIGFELTQQTAADIA 291
Query: 245 HICEATL 251
+ TL
Sbjct: 292 DVTPVTL 298
>gi|45357604|ref|NP_987161.1| transcription initiation factor IIB [Methanococcus maripaludis S2]
gi|74556259|sp|Q6M176.1|TF2B_METMP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|45047164|emb|CAF29597.1| transcription initiation factor B [Methanococcus maripaludis S2]
Length = 339
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|255513741|gb|EET90006.1| Transcription factor TFIIB cyclin-related [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 380
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 7/173 (4%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+G + I A Y V N +GR E V + +Y ACR+ P L + + +
Sbjct: 206 LGLPENIRENAALLYRKCVQNNLIRGRPIETVVQAVIYAACRKAGMPRTLDEIATISGLP 265
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+G Y + L + + DP ++ ++ + L G + + A ++L
Sbjct: 266 KKEIGRAYRAISHELGLK-----IPLTDPIAYVPRYVNALKLSGEAQ--EKAVELLNDAM 318
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259
+ +GR P+G+ AA+Y++ G + ++ ++ + + E T+ R E +
Sbjct: 319 AKGLVSGRSPTGVSAAAVYIAGALAGERRTQKEVADVAGVTEVTIRNRYRELK 371
>gi|389847221|ref|YP_006349460.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448614833|ref|ZP_21663861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244527|gb|AFK19473.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445752920|gb|EMA04339.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 331
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 17/247 (6%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQS-----QLSGNFVRTIQSEYGA--SRERLMEKAFDDMR 79
K++ D ST + K+A G+S + +RT + S+ER +++A ++
Sbjct: 92 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 151
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + E+ + A Y A+ + GR E V + LY A R P L +
Sbjct: 152 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSLDEL 209
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
++ EL Y + + L + +K DP ++ +F L + + AR
Sbjct: 210 EKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--DLSDEAERQAR 262
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259
+L K I +G+ P GL AA+Y +AL K ++S++ K+ I E T+ R E
Sbjct: 263 QLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSKVADISEVTIRNRYKELL 322
Query: 260 NTDSGSL 266
GSL
Sbjct: 323 EVQDGSL 329
>gi|448585353|ref|ZP_21647746.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445726053|gb|ELZ77670.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 332
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 17/247 (6%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQS-----QLSGNFVRTIQSEYGA--SRERLMEKAFDDMR 79
K++ D ST + K+A G+S + +RT + S+ER +++A ++
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + E+ + A Y A+ + GR E V + LY + R P L +
Sbjct: 153 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSLDEL 210
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
++ EL Y + + L + +K DP ++ +F L G + + AR
Sbjct: 211 EKVSRVDKMELTRTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GLSDEAERQAR 263
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259
+L K I +G+ P GL AA+Y +AL K ++S++ + I E T+ R E
Sbjct: 264 KLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELL 323
Query: 260 NTDSGSL 266
G+L
Sbjct: 324 EVQDGTL 330
>gi|448321090|ref|ZP_21510571.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445604490|gb|ELY58438.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 324
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 9/200 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSALYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEIAAVSRVEKDEIARTYRYVIRELGLE-----VQPADPESYVPRFASE 244
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L + + AR +L + K + + +G+ P GL AA+Y +AL K +++D+ ++
Sbjct: 245 LEL--SDETERRARQLLQTAKEEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVAS 302
Query: 246 ICEATLMKRLIEFENTDSGS 265
I E T+ R E + G+
Sbjct: 303 ISEVTIRNRYHELLEAEGGA 322
>gi|448528868|ref|ZP_21620248.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710316|gb|ELZ62135.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 354
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + D + A Y A++ N GR E V + LY
Sbjct: 162 SKERNLKQALGEIDRMASALGL--PDNVRETASVIYRRALSENLLPGRSIEGVATAALYA 219
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L +F+ + EL Y + + L + ++ DP+ ++ +F R
Sbjct: 220 AARQVGNPRSLDEFTAVSRVEKMELTRTYRYVVRELGLR-----VQPADPTSYVPRFVSR 274
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L + + AR++LA IT+G+ P GL AA+Y +AL K ++S + +
Sbjct: 275 LDL--SDETERRARELLADAASAGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSDVAD 332
Query: 246 ICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 333 VSEVTIRNRYKEL 345
>gi|340623224|ref|YP_004741677.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
gi|339903492|gb|AEK18934.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
Length = 339
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|289580210|ref|YP_003478676.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281448|ref|ZP_21472754.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289529763|gb|ADD04114.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445578870|gb|ELY33270.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 329
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 136 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 193
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 194 AARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 248
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL A +Y +AL K +++++ ++
Sbjct: 249 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVA 305
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 306 SISEVTIRNRYKEL 319
>gi|150399786|ref|YP_001323553.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399791|ref|YP_001323558.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399796|ref|YP_001323563.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399801|ref|YP_001323568.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150012489|gb|ABR54941.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012494|gb|ABR54946.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012499|gb|ABR54951.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012504|gb|ABR54956.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
Length = 339
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPIDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|161527525|ref|YP_001581351.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338826|gb|ABX11913.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 11/204 (5%)
Query: 54 NFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGR 113
N +RT + + + KAF + MK L++ D +V A Y V+ T+GR
Sbjct: 103 NRLRTWDQRSKSRKTATLSKAFTLLHSMKTKLSV--PDNVVENAAYIYRKIVSAKLTRGR 160
Query: 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV 173
+ ++ LY ACR+ + P L D + N+ L + + L + L Q
Sbjct: 161 TMASLISASLYAACRENNIPRTLDDIAKAGNVERRILSRDLRTIIKKLGLN-----LNQY 215
Query: 174 DPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 232
D + F+ K ++ + L K+ A DIL + + IT G+ P A+LY+S + +G
Sbjct: 216 DTASFISKISNNMNLKETTKR---GAFDILKRCEEEGITAGKHPVAQAAASLYISCVLNG 272
Query: 233 LKFSKSDIVKIVHICEATLMKRLI 256
+ S+ + + + T+ R +
Sbjct: 273 ERVSQKRVSVEAGVSDVTIRNRTV 296
>gi|385804962|ref|YP_005841362.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730454|emb|CCC41793.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 314
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 13/187 (6%)
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RER AF ++R++ AL++ + +I A + A + + +GR E A+C+Y A
Sbjct: 123 RERNQVYAFTEIRRLTGALSLPK--QIRDDACSLFRSAQSEDLLRGRSLEGFAAACVYAA 180
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + + ++ E A Y L + L + + +DP+ +L +F L
Sbjct: 181 CRVAGVARTIEEITDIAKATSAEQRAAYTALNRELGLP-----IGPIDPAQYLPRFASEL 235
Query: 187 -LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
LP ++ C+ I A I GR PSG+ A LY +A G + ++ I
Sbjct: 236 ELPSDIERRACEYISMITAQ----GIGAGRNPSGVAAACLYTAARDIGFELTQQTAADIA 291
Query: 245 HICEATL 251
+ TL
Sbjct: 292 DVTPVTL 298
>gi|407465796|ref|YP_006776678.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048984|gb|AFS83736.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 301
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 25/238 (10%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQ 80
+ D +T + A LS + TI+ S+ +R +AF ++ +
Sbjct: 67 TMHDMGLATIINPINKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELNR 126
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+K+ L I SD ++ A Y A+ + +GR + A+ LY ACR S P L D
Sbjct: 127 LKDKLAI--SDSVIEKAAYIYRKALEKGLVRGRSISALMAAALYAACRDTSTPRNLKDVE 184
Query: 141 NYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 196
NI ++ Y L + L + D + ++ I + + T R
Sbjct: 185 QAANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRY---------- 234
Query: 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
A +L + + ++ G+ P GL AALY+S + +G ++ DI + ++ E T+ R
Sbjct: 235 -ATKVLKMAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRNR 291
>gi|222476043|ref|YP_002564564.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|345007208|ref|YP_004810060.1| Cyclin domain-containing protein [halophilic archaeon DL31]
gi|354612343|ref|ZP_09030294.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
gi|222454414|gb|ACM58678.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|344322834|gb|AEN07687.1| Cyclin domain protein [halophilic archaeon DL31]
gi|353191188|gb|EHB56696.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
Length = 331
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 17/199 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + ++R++ + L + SD I A + + A + +GR E + + +Y AC
Sbjct: 139 ERNLAYGLGEVRRLASTLEL--SDSIRDQACQLFRSAQNEDLLRGRSIEAIATASVYGAC 196
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R +P +L + ++ + + + Y L L + P F+ +F L
Sbjct: 197 RCNDRPVILDEVADSARVELSRVRNAYKTLNTELGLPTPPR-----RPQSFIPRFASEL- 250
Query: 188 PGGNKKVCDTAR----DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
V DT R ++ + I+ G +P+G+ A LY +A G F+++D+ ++
Sbjct: 251 -----DVADTVRQRAFELAKGAEATIISNGCQPTGVAAACLYKAAREQGQFFTQTDLAEV 305
Query: 244 VHICEATLMKRLIEFENTD 262
T+ R E E D
Sbjct: 306 AETTPVTIRTRWNELEEVD 324
>gi|448739810|ref|ZP_21721814.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445798476|gb|EMA48880.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 323
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 94/199 (47%), Gaps = 14/199 (7%)
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
+ER +++AF ++ +M +AL + +S + A Y A+ GR E V + +++A
Sbjct: 129 KERNLKQAFAEIERMASALGLPQS--VRETAGVIYRRAIEDGLLPGRSIEGVATAAIHIA 186
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
RQ + P L + + + Y + + L I L DP +L +F L
Sbjct: 187 SRQANIPRSLDTLAEVSRVEKLSITRTYRYVTRELDIN-----LPPADPLEYLPRFVSDL 241
Query: 187 LPGGNKKVCDTARDILASMKRDWIT--TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
+ +V +R++L ++ D + +G+ P GL AA+Y +L K ++ + ++
Sbjct: 242 --DLSDEVEHRSRELLETVSEDEPSYLSGKNPVGLAAAAVYAGSLLCNEKVTQVAVGEVA 299
Query: 245 HICEATLMKR---LIEFEN 260
I + T+ R L+EF++
Sbjct: 300 DISQVTIRNRYTELLEFQD 318
>gi|448369498|ref|ZP_21556050.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445650673|gb|ELZ03589.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 329
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 136 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 193
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 194 AARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 248
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL A +Y +AL K +++++ ++
Sbjct: 249 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVA 305
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 306 SISEVTIRNRYKEL 319
>gi|448358672|ref|ZP_21547349.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445645254|gb|ELY98260.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 329
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 136 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 193
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 194 AARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 248
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL A +Y +AL K +++++ ++
Sbjct: 249 LDLSDETERM---ARELLDSARKEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVA 305
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 306 SISEVTIRNRYKEL 319
>gi|329766198|ref|ZP_08257756.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137257|gb|EGG41535.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 262
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 14/238 (5%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSG-----NFVRTIQSEYGASRERLMEKAFDDMRQMKN 83
+ D ST K+++G + S N +RT + + KAF + MK
Sbjct: 29 TMHDKGLSTVIGINKDSSGNTLSSKTKYEFNRLRTWDQRSKSRSTVALSKAFTLLNAMKT 88
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
L G D ++ A Y AV T+GR + ++ LY ACR+ + P L D ++
Sbjct: 89 KL--GIPDNVIENAAYIYRKAVNSKLTRGRTMASLISASLYAACRENNIPRTLDDIADAG 146
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
NI L + + L + L Q D S F+ K ++ + +K A DIL
Sbjct: 147 NIERRILSRDLRTIIKKLGLK-----LNQYDTSSFISKISNNM--NLKEKTKRDAFDILK 199
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261
+ IT G+ P A+LY++ + + K S+ + + T+ R+ + T
Sbjct: 200 RCELKEITAGKHPVAQAAASLYIACMINNEKISQKKFSSEAGVSDVTIRNRVTLIKKT 257
>gi|302780755|ref|XP_002972152.1| hypothetical protein SELMODRAFT_412683 [Selaginella moellendorffii]
gi|300160451|gb|EFJ27069.1| hypothetical protein SELMODRAFT_412683 [Selaginella moellendorffii]
Length = 799
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 116/274 (42%), Gaps = 27/274 (9%)
Query: 4 CSSCARHVT-GHRPYDSQLCCDRCGKVLEDHNFSTEATF-VKNAAGQSQLSGNFVRTIQS 61
CS+C R T P CC CG V++D ++ + G + ++G + +
Sbjct: 332 CSACGRAGTVTTDPLSGLFCCCECGVVVDDDALGSDHQVGLVGERGGTLVAGEGIGALPG 391
Query: 62 EY-----GASRERLMEKAFDDMRQMKNA-----LNIGESDEIVHVAKRFYGIAVARNFTK 111
+ G S + +K D +R++++ L ++DE+ + R A ++
Sbjct: 392 KRFLYRNGGSDQYFAKKKQDALRRIRDVAAALRLQPNDADEVEAMVDR----ATNGDWGS 447
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR + + +C Y+ R P L++ + + V ELG V +L + +A L
Sbjct: 448 GRWFDALVGACAYVVVRNHRLPLTLVEVAYASDCGVRELGRVLGKLVREFAMA-----LP 502
Query: 172 QVDPSIFLHKFT------DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALY 225
Q DP +FL + +L +K+ R +L M +++TGR AAL
Sbjct: 503 QEDPIVFLERLVLTHAGFSKLSRDAARKIIGQCRVLLEWMATWFVSTGRHALPAAAAALV 562
Query: 226 VSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259
+ A + ++ ++ +H AT MKR E +
Sbjct: 563 IVADANRIEIGLEEVSSELHSPVATSMKRFREIQ 596
>gi|448361954|ref|ZP_21550567.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445649634|gb|ELZ02571.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 329
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 136 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 193
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 194 AARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 248
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL A +Y +AL K +++++ ++
Sbjct: 249 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVA 305
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 306 SISEVTIRNRYKEL 319
>gi|302791415|ref|XP_002977474.1| hypothetical protein SELMODRAFT_417248 [Selaginella moellendorffii]
gi|300154844|gb|EFJ21478.1| hypothetical protein SELMODRAFT_417248 [Selaginella moellendorffii]
Length = 805
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 116/274 (42%), Gaps = 27/274 (9%)
Query: 4 CSSCARHVT-GHRPYDSQLCCDRCGKVLEDHNFSTEATF-VKNAAGQSQLSGNFVRTIQS 61
CS+C R T P CC CG V++D ++ + G + ++G + +
Sbjct: 330 CSACGRAGTVTTDPLSGLFCCCECGVVVDDDALGSDHQVGLVGERGGTLVAGEGIGALAG 389
Query: 62 EY-----GASRERLMEKAFDDMRQMKNA-----LNIGESDEIVHVAKRFYGIAVARNFTK 111
+ G S + +K D +R++++ L ++DE+ + R A ++
Sbjct: 390 KRFLYRNGGSDQYFAKKKQDALRRIRDVAAALRLQPNDADEVEAMVDR----ATNGDWGS 445
Query: 112 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLK 171
GR + + +C Y+ R P L++ + + V ELG V +L + +A L
Sbjct: 446 GRWFDALVGACAYVVVRNHRLPLTLVEVAYASDCGVRELGRVLGKLVREFAMA-----LP 500
Query: 172 QVDPSIFLHKFT------DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALY 225
Q DP +FL + +L +K+ R +L M +++TGR AAL
Sbjct: 501 QEDPIVFLERLVLTHAGFSKLSRDAARKIIGQCRVLLEWMATWFVSTGRHALPAAAAALV 560
Query: 226 VSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259
+ A + ++ ++ +H AT MKR E +
Sbjct: 561 IVADANRIEIGLEEVSSELHSPVATSMKRFREIQ 594
>gi|408403957|ref|YP_006861940.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364553|gb|AFU58283.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 322
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 124/305 (40%), Gaps = 43/305 (14%)
Query: 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED---------HNFSTEATFVKN-------- 44
V CS+C V ++ C RCG V++ FS + + K+
Sbjct: 5 VVCSACKNEVVVTDHECGEVICSRCGIVIDRVESPAVQDWRAFSVDEFYRKSRTGAPTSL 64
Query: 45 ---------AAGQSQLSG---NFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDE 92
+ G S+ +G N +R A+ +R +++A ++ +K +L G D
Sbjct: 65 ARYNKGLLTSIGNSKANGLNFNRIRVWDFRIQAANDRSLKQALPELEHLKESL--GLPDA 122
Query: 93 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 152
IV + FY A KGR V A+ +YLACR+ P L + + N+ ++
Sbjct: 123 IVEKSAYFYRKASRLGLIKGRTVSSVLAASVYLACRELENPRTLSEIATASNVARKKISR 182
Query: 153 VYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITT 212
Y L ++ D + VD + + + +++ G ++K A I+ + I+
Sbjct: 183 DYRMLVRMF---DPK--IPTVDHARCITRIANKV--GVSEKTKRIAVKIMREIVAMQISA 235
Query: 213 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN-----TDSGSLT 267
G+ P G+ LY++ + G ++ ++ + E T+ R E + S +L
Sbjct: 236 GKGPMGIAATVLYIACMHAGEVKTQKELSIAAGVTEVTIRNRYSELKKYLQDFAKSSTLA 295
Query: 268 IEDFM 272
I M
Sbjct: 296 IAILM 300
>gi|448352869|ref|ZP_21541649.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445641511|gb|ELY94588.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 329
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 136 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 193
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 194 AARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 248
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL A +Y +AL K +++++ ++
Sbjct: 249 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVA 305
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 306 SISEVTIRNRYKEL 319
>gi|403413738|emb|CCM00438.1| predicted protein [Fibroporia radiculosa]
Length = 353
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 89/215 (41%), Gaps = 15/215 (6%)
Query: 47 GQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA 106
G S ++ R + ER + +AF D+ + ++ ++ I +AK+ Y +
Sbjct: 107 GGSGIARELQRAASRSQASRSERNLLQAFRDIASWCDQFSLPKT--ISDIAKQLYKRSDE 164
Query: 107 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166
+G+ + V A+C+++ACRQ P + N +++ LG Y L Q +
Sbjct: 165 EKLLRGKPLDAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQCYKALEQAFNLTPG 224
Query: 167 SNVLKQ---------VDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKP 216
++ P L ++ + L LP + +C DI+ + I GR P
Sbjct: 225 ASATTDRHLTTPAAARGPEDLLVRYCNHLDLPPNVQPICS---DIIIQARELGIADGRSP 281
Query: 217 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
+ G A+Y + G S DI + + E T+
Sbjct: 282 VSIAGGAIYFTCHLLGKVKSAKDISTVAGVSEGTI 316
>gi|448591526|ref|ZP_21651014.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445733500|gb|ELZ85069.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 331
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 10/202 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 138 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATASLYA 195
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + + EL Y + + L + +K DP ++ +F
Sbjct: 196 AARMADTPRSLDELEKVSRVEKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASE 250
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR++L K + +G+ P GL AA+Y +AL K ++S++ ++
Sbjct: 251 L--GLSDEAERQARELLRGAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSEVAD 308
Query: 246 ICEATLMKRLIE-FENTDSGSL 266
I E T+ R E E DS L
Sbjct: 309 ISEVTIRNRYKELLEVQDSNML 330
>gi|298675089|ref|YP_003726839.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298288077|gb|ADI74043.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 9/191 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + A ++ +M +AL + + + A Y AV +N +GR E V A+ LY AC
Sbjct: 150 ERNLAFALSELDRMASALGLPRT--VRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAAC 207
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ S P L + ++ E+G Y + + L + L P ++ +F L
Sbjct: 208 RQCSVPRTLDEIGEVSRVSRIEIGRTYRFISRELSLK-----LMPTSPIDYVPRFCSGL- 261
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+V +IL IT+GR P+G+ AA+Y++++ G + ++ ++ + +
Sbjct: 262 -KLKSEVQSKGVEILRQASEKEITSGRGPTGVAAAAIYIASMLCGERRTQREVADVAGVT 320
Query: 248 EATLMKRLIEF 258
E T+ R E
Sbjct: 321 EVTIRNRYKEL 331
>gi|150401578|ref|YP_001325344.1| transcription initiation factor IIB [Methanococcus aeolicus
Nankai-3]
gi|189029853|sp|A6UW60.1|TF2B_META3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150014281|gb|ABR56732.1| Transcription factor TFIIB cyclin-related [Methanococcus aeolicus
Nankai-3]
Length = 334
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y + +
Sbjct: 173 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEMSRVDRKEIGRTYRFISR 232
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L I L P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 233 ELKIR-----LAPTSPIDYVPRFASELKLPG---EVESKAISILQKAGDKGLTSGRGPTG 284
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 285 VAAAAIYIASVLHGTRKTQREVADVAGVTEVTIRNRYKEL 324
>gi|408402853|ref|YP_006860836.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363449|gb|AFU57179.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 292
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 21/220 (9%)
Query: 44 NAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGI 103
NA+ Q + +F +S+ + +R + AF ++ ++K+ L G SD I+ Y
Sbjct: 84 NASIQRLRTWDF----RSQAHSPTKRNLMHAFSELGRLKDKL--GLSDAIMEKTAYLYRK 137
Query: 104 AVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVY----LQLCQ 159
A ++ +GR T + A+ +Y +CR+ L D + +I + Y L+L
Sbjct: 138 AHEKHLVRGRSTSSILAAAIYASCRELGASRTLKDVAKATDIKRKAISRSYRILVLELDI 197
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+ +AD + ++ S L + T R+ DT D++ I+ G+ P GL
Sbjct: 198 KVPLADPMKCIAKIANSAKLTEKTKRM-------AMDTMNDLIGKE----ISAGKLPMGL 246
Query: 220 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259
LY+S L +G ++ DI + + E T+ R + +
Sbjct: 247 AATVLYMSCLANGESKTQKDIADMAGVTEVTIRNRFKDLK 286
>gi|448476740|ref|ZP_21603675.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815191|gb|EMA65123.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 307
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 90/190 (47%), Gaps = 20/190 (10%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL I Y A+ + +GR E V + LY AC
Sbjct: 129 ERNLQFALSEIDRMASALVI-------------YRRALNEDLIRGRSIEGVSTAALYAAC 175
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R++ P L + S+ + E+G Y + Q L + ++ VDP ++ +F+ L
Sbjct: 176 RKEGIPRSLEEISDVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL- 229
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 230 -DLSEEVQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT 288
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 289 EVTIRNRYQE 298
>gi|448624206|ref|ZP_21670279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445750173|gb|EMA01612.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 309
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 102/236 (43%), Gaps = 20/236 (8%)
Query: 32 DHNFSTEATFVKNAAGQS-------QLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNA 84
D S E + ++A G++ QL ++ + + ER + A ++ +M +A
Sbjct: 81 DRGVSAEIGYNRDANGRTVSSKKRRQLYRLRREHRRARFESKGERNLATALGEIIRMGSA 140
Query: 85 LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144
L++ S ++ A + Y A + +GR E + A LY CR++ P + ++
Sbjct: 141 LDLSWS--LIEEASQLYRHAQDADLIRGRSVEMIAAGSLYATCRRRGLPRPRAEIASVAR 198
Query: 145 INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP--GGNKKVCDTARDIL 202
+ ++ Y L E + QV + + RL G + +V A ++
Sbjct: 199 CSCDQVQTGYRAL------NSELGIDAQV---VTARTYVTRLGSDSGLSTRVQSRAYELA 249
Query: 203 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ D IT GR P+G+ A LY++ H + +++++ + + TL R +E
Sbjct: 250 TTADEDGITNGRNPAGVAAACLYLAGTEHDVAPTQTELAALADVSVPTLRARYVEL 305
>gi|448627270|ref|ZP_21671883.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445759099|gb|EMA10386.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 322
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + A Y A+ + GR E V S LY
Sbjct: 131 SKERNLKQALGEIDRMASALGLPQN--VRETASVIYRRALGDDLLPGRSIEGVATSALYA 188
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + + + EL Y + + L + ++ DP +L +F
Sbjct: 189 AARMAGNPRSLDEMARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISD 243
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++ ARD++ ++ + +G+ P G+ AA+Y +AL K ++S + +
Sbjct: 244 L--ELSEETQRQARDLVEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVAD 301
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 302 ISEVTIRNRYKEL 314
>gi|448335856|ref|ZP_21524987.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
gi|445615482|gb|ELY69129.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
Length = 308
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 18/228 (7%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGN--------FVRTIQSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G ++LSG + + + ER + ++R++ +
Sbjct: 79 DRGLSTEIGRGTDANG-NELSGQKRRRLTRMRREQTRGRFQSKAERNLAHGLSEVRRISS 137
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
AL + E+ I A + + A + +GR E + A+ +Y ACR +P L D +
Sbjct: 138 ALELSET--IRDQACQLFRSAQNEDLLQGRSIEAMAAASVYGACRCNGRPRTLDDITESA 195
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
+ + Y L L + + V PS F+ + L + ++ AR +
Sbjct: 196 RVEQSRVTNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DVSDQIRQRARQLAE 248
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
+ + TTG +PSG A LY + G ++SD+ + ++ T+
Sbjct: 249 ASESTGATTGVRPSGFAAACLYKAGREDGRWLTQSDVADVANVSVVTV 296
>gi|448479384|ref|ZP_21604236.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445822662|gb|EMA72426.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 385
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 12/191 (6%)
Query: 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 133
A ++ +M +AL G D + A Y A+ + GR E V + LY A RQ P
Sbjct: 200 ALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTP 257
Query: 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 193
L + + + E+ Y + + L + ++ DP ++ +F L G + +
Sbjct: 258 RSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GLSDE 310
Query: 194 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 253
AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T+
Sbjct: 311 AERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRN 370
Query: 254 R---LIEFENT 261
R L+E E++
Sbjct: 371 RYHELLEAEDS 381
>gi|333911004|ref|YP_004484737.1| transcription initiation factor IIB [Methanotorris igneus Kol 5]
gi|333751593|gb|AEF96672.1| Transcription initiation factor IIB [Methanotorris igneus Kol 5]
Length = 343
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y L +
Sbjct: 182 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLAR 241
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 242 ELGIK-----LAPTNPIDYVPRFASELGLPG---EVESKAIAILQKAAEKGLTSGRGPTG 293
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ AA+Y++++ G + ++ D+ ++ + E T+ R E
Sbjct: 294 VAAAAIYIASVLLGNRRTQRDVAEVAGVTEVTIRNRYKEL 333
>gi|430811796|emb|CCJ30774.1| unnamed protein product [Pneumocystis jirovecii]
Length = 337
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 114/266 (42%), Gaps = 42/266 (15%)
Query: 23 CDRCGKVLEDHNFSTEA---TFVKNAAGQSQ----------LSGNFVRTIQSE----YGA 65
C CG V+ D T + TF + G +Q L+G+ + TI S +G
Sbjct: 45 CGSCGLVVGDRIVDTRSEWRTFANDEGGDNQSRVGSSANPLLNGSQLDTIISTQDGGHGL 104
Query: 66 SR----------ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRT 115
S+ ER + A+ ++ M +A+++ +S I +AK+ + KGR
Sbjct: 105 SKTQGRSVVQKGERNLMSAYREISAMCDAIHLPKS--ISDIAKQVFKRVDDSKALKGRSN 162
Query: 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY---------IADE 166
E + ++C+++ACRQ P + N+ E+G V+ L ++L D+
Sbjct: 163 ESIISACIFIACRQGKAPRTFKEICTLTNVPKKEIGRVFKSLQKMLTDNNILDNTGKTDD 222
Query: 167 SNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALY 225
S V P + +F +RL LP V A ++ + + GR P + + +Y
Sbjct: 223 SYVPSSTSPKDLMVRFCNRLSLP---TSVQIAASELASRASVEGTLAGRSPISIAASGIY 279
Query: 226 VSALTHGLKFSKSDIVKIVHICEATL 251
+++ +I ++V + ++T+
Sbjct: 280 MASYLFQHPKLPREIAEVVGVSDSTI 305
>gi|389746675|gb|EIM87854.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 353
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Query: 40 TFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
T + G S ++ R ER + AF D+ + ++ ++ I +AK+
Sbjct: 99 TIISFRDGGSGMARELQRAASRAQNTRSERNLLSAFRDISSWCDQFSLPKT--ISDIAKQ 156
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y + +G+ E V A+C+++ACRQ P + N +++ LG Y L Q
Sbjct: 157 LYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQCYKALEQ 216
Query: 160 VLYIA------DESNVLKQVD--PSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWI 210
++ + +N + + P L ++ + L LP +C +DI+ + I
Sbjct: 217 AFNLSPGAQNHNSTNGTQVISTGPEDLLIRYCNHLDLPPYFHGIC---KDIVVEARNRGI 273
Query: 211 TTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIED 270
GR P + G A++ + G S +I + + E T +K + + D +D
Sbjct: 274 ADGRSPISIAGGAIFFTCFLLGKPKSLREICTVAGVSEGT-VKLVYKLYCAD------KD 326
Query: 271 FMARKKELHEGVAANL 286
+ ++K + EG ANL
Sbjct: 327 KLVKQKWIDEG-KANL 341
>gi|407462994|ref|YP_006774311.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046616|gb|AFS81369.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 309
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+G SD I+ A FY A+ RN +GR + V A+CLY AC+ L + + I
Sbjct: 134 LGLSDTIIERASLFYRKAIKRNLIRGRTVKSVAAACLYAACKDLEHDRSLTEIAIQFVIK 193
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+ Y L + L + V+P + K T +L ++K A IL +
Sbjct: 194 RKEISRAYRILFKELGFT-----VNVVNPIKLISKITSKLEL--SEKTIRKATQILTVAQ 246
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259
IT G+ P L + +Y + + G S++ + + + ++ R+ EF+
Sbjct: 247 DAGITVGKNPEILAASVIYAACVITGELKSQTQVAEAANTSTVSIRNRIREFK 299
>gi|448730858|ref|ZP_21713162.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445793035|gb|EMA43630.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 334
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 93/191 (48%), Gaps = 11/191 (5%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M +AL + S + VA Y A++ + +GR E V LY AC
Sbjct: 146 ERNLQFALSETDRMASALGVPRS--VREVASVIYRRALSDDLIRGRSIEAVATGALYAAC 203
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ + E+G Y YIA E + ++ DP ++ +F L
Sbjct: 204 RKEGIPRSLEEVTHVARVEQKEIGRTY------RYIARELELGMRPTDPQKYVPRFCSAL 257
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
+++V A +++ + + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 258 --DLSEEVQSKANEVIEASVAEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQV 315
Query: 247 CEATLMKRLIE 257
E T+ R E
Sbjct: 316 TEVTIRNRYQE 326
>gi|448564209|ref|ZP_21635910.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445717196|gb|ELZ68917.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 309
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 18/228 (7%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGNFVRTI--------QSEYGASRERLMEKAFDDMRQMKN 83
D S+E + ++A G++ LSG + + + + + ER + ++R++
Sbjct: 80 DRGLSSEIGYKRDANGRT-LSGKKRQQVARMRREQSRGRFQSKAERNLAHGLGEVRRIAG 138
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
AL + ES A R + A + + +GR E + A+ +Y CR L + ++
Sbjct: 139 ALELSESTR--DQACRLFRSAQSEDLLRGRSIEAIAAASVYGICRCNRLMRTLEEIADLA 196
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
+ + Y L L + V P F+ + L G +++ AR I
Sbjct: 197 RVENQRVVNAYKTLNTELGLP-----TPPVRPRDFIPRLVSEL--GVPEEISRRARSIAM 249
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
++ +TTG P+G GA LY H L +SD+ + ++ AT+
Sbjct: 250 EAEQLGVTTGCNPAGFAGACLYWVGCDHALHLRQSDVAQAANVSAATI 297
>gi|291333532|gb|ADD93228.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C54]
Length = 311
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 21/244 (8%)
Query: 30 LEDHNFSTEAT------FVKNAAGQSQLSGNFVRTIQSEYGASR--ERLMEKAFDDMRQM 81
L D STE + + ++ + ++Q +R Q AS+ ER M A +M+ +
Sbjct: 75 LPDKGLSTEISPTNRDYYGRSISNKNQSMLFRMRKWQRRARASKSAERNMAVAMREMQAV 134
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
A N+ I A Y A+ GR E V + LY ACRQ+ P L + S
Sbjct: 135 --ATNLKLPRRIQETAAFIYRRAIQEQSLSGRAIEMVACAALYAACRQEGVPRTLTEISR 192
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+ + E+ Y QV+ A + + + + P +L + +L + KV ARD+
Sbjct: 193 HSRYSRKEISRTY----QVMVKALKMHSMPPL-PEDYLPRICSKL--ELSPKVEGAARDL 245
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR---LIEF 258
L + + D T P L AA+Y++++ + + + D+ + + E T+ R + +F
Sbjct: 246 LRAAQ-DVPLTNSVPISLAAAAVYIASIVNNERRKQKDVARAADLTEVTIRSRYKEMAQF 304
Query: 259 ENTD 262
N D
Sbjct: 305 LNID 308
>gi|336254668|ref|YP_004597775.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338657|gb|AEH37896.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVSTASLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + E+ Y + + L + ++ DP ++ +F
Sbjct: 191 AARQAGTPRSLDEIDAVSRVEKDEIARTYRYVIRELGLE-----VQPADPESYVPRFASD 245
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L LP ++ AR +L + K I +G+ P GL AA+Y AL K +++D+ ++
Sbjct: 246 LDLPDETER---RARQLLKTAKDSGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVA 302
Query: 245 HICEATLMKRLIEF 258
+I E T+ R E
Sbjct: 303 NISEVTIRNRYHEL 316
>gi|167045079|gb|ABZ09742.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8I13]
Length = 304
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R +AF ++ ++K+ L+I SD ++ A Y A+ + +GR + AS LY AC
Sbjct: 117 DRNFRQAFSELNRLKDKLSI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAAC 174
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFT 183
R S P L D NI ++ Y L + L + D + ++ I + + T
Sbjct: 175 RDTSTPRNLKDVEQAANIKRKDIARCYRLLVKELDLHMPVTDSVQCVARIASKIGIQEKT 234
Query: 184 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
R A +L + + ++ G+ P GL AALY++ + +G ++ DI +
Sbjct: 235 KRF-----------ATKVLKRAQENEVSAGKDPMGLAAAALYLACVKNGEDKTQRDIAEA 283
Query: 244 VHICEATLMKR 254
++ E T+ R
Sbjct: 284 ANVTEVTIRNR 294
>gi|448348503|ref|ZP_21537352.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445642870|gb|ELY95932.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 360
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V S LY
Sbjct: 167 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 224
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ RQ P L + S ++ EL Y + + L + +K DP ++ +F
Sbjct: 225 SARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSD 279
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL A +Y +AL K +++++ ++
Sbjct: 280 LDLSDETERM---ARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVA 336
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 337 SISEVTIRNRYKEL 350
>gi|448727279|ref|ZP_21709645.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
gi|445791493|gb|EMA42133.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
Length = 326
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASAL--GLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + EL Y + + L + ++ DP+ ++ +F
Sbjct: 191 AARQAGTPRSLDEIATVSRVGKMELTRTYRYVVRELGLE-----IQPADPASYVPRFASD 245
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++ AR +L + K + I +G+ P GL AA+Y +AL K ++ + ++
Sbjct: 246 LEL--SEEAERRARQLLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVAD 303
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 304 ISEVTIRNRYKEL 316
>gi|448343761|ref|ZP_21532680.1| transcription initiation factor TFB [Natrinema gari JCM 14663]
gi|445622394|gb|ELY75852.1| transcription initiation factor TFB [Natrinema gari JCM 14663]
Length = 308
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 25/255 (9%)
Query: 10 HVTGHRPYDSQLCCDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGN--------FVR 57
H R YD + C +R G L D STE +A G +++SG
Sbjct: 54 HGPEWRAYDEEEC-ERTGAPLTAARHDRGLSTEIGRGTDAKG-NEISGKKRRRLARMRRE 111
Query: 58 TIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+ + + ER + ++R++ +AL + SD + A + + A + +GR E
Sbjct: 112 QTRGRWRSKAERNLAHGLGEVRRLASALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEG 169
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+ A+ +Y ACR L+ D S + + Y L + L + E V PS+
Sbjct: 170 IAAASVYGACRCNGLSRLVDDVSEMARVAESRVTNAYKTLNEELGLPAEP-----VSPSM 224
Query: 178 FLHKF-TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
F+ + +D P ++ AR + + +TTG P+G A LY + G +
Sbjct: 225 FVPRLASDLECP---DEIRQRARALAEQAEERGVTTGVHPAGFAAACLYKAGREEGRWLT 281
Query: 237 KSDIVKIVHICEATL 251
+S+ + + +AT+
Sbjct: 282 QSEAADVANASKATV 296
>gi|448448382|ref|ZP_21591195.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814798|gb|EMA64756.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 380
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A++ N GR E V + LY
Sbjct: 188 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYA 245
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L +F+ + EL Y + + L + ++ DP+ ++ +F R
Sbjct: 246 AARQVGNPRSLDEFTAVSRVEKMELTRTYRYVVRELGLR-----VQPADPTSYVPRFVSR 300
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++ AR++L IT+G+ P GL AA+Y +AL K ++S++ +
Sbjct: 301 L--DLSEETERRARELLEDAANAGITSGKSPVGLAAAAVYAAALLSNEKVTQSEVSDVAD 358
Query: 246 ICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 359 VSEVTIRNRYKEL 371
>gi|448739366|ref|ZP_21721381.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
gi|445799961|gb|EMA50330.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
Length = 326
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASAL--GLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + EL Y + + L + ++ DP+ ++ +F
Sbjct: 191 AARQAGTPRSLDEIATVSRVGKMELTRTYRYVVRELGLE-----IQPADPASYVPRFASD 245
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++ AR +L + K + I +G+ P GL AA+Y +AL K ++ + ++
Sbjct: 246 LEL--SEEAERRARQLLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVAD 303
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 304 ISEVTIRNRYKEL 316
>gi|429217323|ref|YP_007175313.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Caldisphaera lagunensis DSM
15908]
gi|429133852|gb|AFZ70864.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Caldisphaera lagunensis DSM
15908]
Length = 317
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)
Query: 90 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 149
S+++ A + Y A + T+GR E V A+ LY ACR+ P + + + +L+I +
Sbjct: 143 SNKVREEASKMYRDATQKGLTRGRSIESVVAATLYAACRKLRIPCTIDEIAKHLSIKDND 202
Query: 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDW 209
+ + C L + D + ++P +F+++ L G V A IL +
Sbjct: 203 VKR-EIARCYRLLVRDLEVDIPVIEPELFVNRIVSAL--GLPDYVAVEAIKILREARGKG 259
Query: 210 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 267
T G+ PSGL AA+Y++AL HGL+ ++ ++ + + E T+ R E + L+
Sbjct: 260 TTAGKDPSGLAAAAVYLAALKHGLRRTQKEVAHVAGVTEVTVRNRYKEIAGEAASKLS 317
>gi|161528849|ref|YP_001582675.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340150|gb|ABX13237.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 309
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 16/189 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + KAF + + L I E+ + A Y A+ +N +G + A +Y+ C
Sbjct: 112 ERNLVKAFSILDAYASNLGIPENAK--EHAAYIYRKALEKNLIRGSSIHTMVAGSVYVTC 169
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI---ADESNVLKQVDPSIFLHKFTD 184
+Q P D + NI+ L Y +L + L + E++ + QV S+ + + T
Sbjct: 170 KQLGIPRSADDTTRVSNISRRRLSKAYKRLVKNLDLKIDPSETDFVTQVANSLSVSEKTK 229
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
RL A I+ +K++ I G++P G+ AA+Y+SA+ + S + I K+
Sbjct: 230 RL-----------AIKIINDVKKEKIHVGKRPLGITAAAVYLSAINYDEPKSMAKISKVT 278
Query: 245 HICEATLMK 253
+I T+ K
Sbjct: 279 NISTVTIRK 287
>gi|386875848|ref|ZP_10118004.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386806350|gb|EIJ65813.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 307
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 11/187 (5%)
Query: 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 133
AFD + ++++ L++ SD + A Y A+ R T GR V A+ +Y+ACR
Sbjct: 124 AFDFLERLQDKLSV--SDSVKETAAHIYRKALERKITSGRSIYSVVAASMYIACRNTHTL 181
Query: 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 192
L D + NI + Y + + L + + V+ S F+ K ++ L + G K
Sbjct: 182 RNLSDIATATNIKRTNIAQSYRAIVKQLDLK-----IPLVNQSDFILKISNNLKISAGTK 236
Query: 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 252
+ A +IL + GR P+G+ A++Y S + FS+ I I T+
Sbjct: 237 NL---AIEILKKATELDMIAGRDPAGMASASIYFSNVVRHDGFSQIQIANASGITAVTVR 293
Query: 253 KRLIEFE 259
R E
Sbjct: 294 NRFHELR 300
>gi|448608903|ref|ZP_21660182.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445747280|gb|ELZ98736.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 331
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 17/247 (6%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQS-----QLSGNFVRTIQSEYGA--SRERLMEKAFDDMR 79
K++ D ST + K+A G+S + +RT + S+ER +++A ++
Sbjct: 92 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 151
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + E+ + A Y A+ + GR E V + LY A R P L +
Sbjct: 152 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSLDEL 209
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
++ EL Y + + L + +K DP ++ +F L + + AR
Sbjct: 210 EKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--DLSDEAERQAR 262
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259
+L K I +G+ P GL AA+Y +AL K ++S + ++ I E T+ R E
Sbjct: 263 TLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSEVADISEVTIRNRYKELL 322
Query: 260 NTDSGSL 266
GSL
Sbjct: 323 EVQDGSL 329
>gi|448414464|ref|ZP_21577533.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445682030|gb|ELZ34454.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 340
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 9/201 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 147 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALGDDLLPGRSIEGVATASLYA 204
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + ++ EL Y + + L + ++ DP ++ +F
Sbjct: 205 AARQAGTPRSLDELETVSRVDKMELTRTYRYIVRELKLE-----IEPADPEQYVPRFASE 259
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + A +L K I +G+ P GL AA+Y +AL K ++S + ++
Sbjct: 260 L--GISDEAERQAHTLLRGAKEVGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSEVAS 317
Query: 246 ICEATLMKRLIEFENTDSGSL 266
I E T+ R E D L
Sbjct: 318 ISEVTIRNRYKELLEVDDAGL 338
>gi|448420035|ref|ZP_21580845.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
gi|445674203|gb|ELZ26748.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
Length = 330
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 19/239 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGN------FVRTIQSEYGA--SRERLMEKAFDDMRQ 80
++ D ST + A + LS N +RT + S+ER +++A ++ +
Sbjct: 93 MMHDKGLSTNIGWQDKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 152
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL G D + A Y A+ + GR E V S LY A R P L + +
Sbjct: 153 MASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEIT 210
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTAR 199
N + E+ Y + + L + ++ DP ++ +F L L +++ AR
Sbjct: 211 NVSRVGKDEISRTYRYVVRELKLE-----IEPADPEQYVPRFASDLDLSDESER---HAR 262
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+L + K I +G+ P GL AA+Y ++L K ++S + ++ +I E T+ R E
Sbjct: 263 QLLKTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSQVSEVANISEVTIRNRYHEL 321
>gi|407462691|ref|YP_006774008.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046313|gb|AFS81066.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 323
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Query: 44 NAAGQSQLSGNFVRTIQSEYGASR------ERLMEKAFDDMRQMKNALNIGESDEIVHVA 97
+A G+ S N + + SR E+ + KAF + N LN+ E+ + A
Sbjct: 98 DAVGKKMHSNNIRHFSRMRFWDSRSKSNNKEQNLVKAFTVLDAYSNKLNMPENAK--EHA 155
Query: 98 KRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 157
Y AV + +G + A+ +Y +C+Q P + + S NIN +L Y +L
Sbjct: 156 AYIYRKAVDKKIIRGNSIPSMMAASVYASCKQLGIPRSVDEISKITNINRKKLLRSYKRL 215
Query: 158 CQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+ L I +VD + + ++K A IL K++ I G+ P
Sbjct: 216 VKKLEI--------KVDSTGINYVSKISSSLSVSEKTSRLANKILHDAKQEKIHVGKNPI 267
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 253
G+ A++Y+SA+ HG + I + +I T+ K
Sbjct: 268 GVTAASIYLSAINHGEHVPIARIARKTNISTVTIRK 303
>gi|433593095|ref|YP_007282581.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433308133|gb|AGB33943.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 18/228 (7%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGN--------FVRTIQSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G ++LSG + + + ER + ++R++ +
Sbjct: 96 DRGLSTEIGRGTDANG-NELSGQKRRRLTRMRREQTRGRFQSKAERNLAHGLSEVRRISS 154
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
AL + E+ I A + + A + +GR E + A+ +Y ACR +P L D +
Sbjct: 155 ALELSET--IRDQACQLFRSAQNEDLLQGRSIEAMAAASVYGACRCNGRPRTLDDITESA 212
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
+ + Y L L + + V PS F+ + L + ++ AR +
Sbjct: 213 RVEQSRVTNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DVSDQIRQRARQLAE 265
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
+ + TTG +PSG A LY + G ++SD+ + ++ T+
Sbjct: 266 ASESTGATTGVRPSGFAAACLYKAGREDGRWLTQSDVADVANVSVVTV 313
>gi|284163770|ref|YP_003402049.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|448388030|ref|ZP_21564970.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|284013425|gb|ADB59376.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|445670681|gb|ELZ23278.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 319
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M ++L I S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSEIDRMASSLGIPRS--VREVACVIYRRALDEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + + + E+G Y + Q L + ++ VDP + +F L
Sbjct: 190 RMEGIPRSLEEVAAVSRVERKEIGRTYRYVAQELSLE-----MEPVDPKQYTPRFCSEL- 243
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ +I ++ +
Sbjct: 244 -DLSEEVQAKATEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREIAEVAQVT 302
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 303 EVTIRNRYQE 312
>gi|448604552|ref|ZP_21657719.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445743961|gb|ELZ95441.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 331
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 9/199 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 139 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYA 196
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ R S P L + ++ EL Y + + L + +K DP ++ +F
Sbjct: 197 SARMASTPRSLDELEKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASE 251
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L K + +G+ P GL AA+Y +AL K ++S++ +
Sbjct: 252 L--GLSDESERQARQLLRDAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVAD 309
Query: 246 ICEATLMKRLIEFENTDSG 264
I E T+ R E G
Sbjct: 310 ISEVTIRNRYKELLEVQDG 328
>gi|307166998|gb|EFN60844.1| Transcription factor IIIB 90 kDa subunit [Camponotus floridanus]
Length = 158
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQS-- 61
C +C P C CG VLED ++ TF ++++G+ + FV +
Sbjct: 6 CRNCGSTNIETDPARGDAICMECGFVLEDSVIVSQPTFEESSSGKV-MPKYFVPNDSTGG 64
Query: 62 --EYGA-------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG 112
+GA S ++ +E A + + L + E+D ++++ R Y A+ RN T+G
Sbjct: 65 ATNFGARYFNEKESSKQTLENARKGIIHLAMQLGLDEND--INMSVRIYESALKRNMTRG 122
Query: 113 RRTEQVQASCLYLACRQKSKPFLLIDFSN 141
R+ QA+C+Y+ CR P +L +SN
Sbjct: 123 RKQVHNQAACVYITCRHGDNPRILYIYSN 151
>gi|448300851|ref|ZP_21490848.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584841|gb|ELY39146.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 316
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPRP--VKETASVIYRQALDQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEDIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G K+V A +I+ + + +G+ P+G
Sbjct: 238 DVG--KEVETKAVEIIDTTTEQGLHSGKSPTGF 268
>gi|443709646|gb|ELU04238.1| hypothetical protein CAPTEDRAFT_78120, partial [Capitella teleta]
Length = 144
Score = 58.2 bits (139), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 24/148 (16%)
Query: 4 CSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQSEY 63
C+ C P C CG VLED +E F +N+AG + + G +V S
Sbjct: 2 CTQCGCTDIDTDPARGDAVCTGCGSVLEDQIIVSEVQFQENSAGGASVVGQYV----SAE 57
Query: 64 GA------------------SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAV 105
GA SR+ + ++ + + L + + + A F+ +AV
Sbjct: 58 GACGKSMNLGGGFHHGIGKESRQITYQNGKRRIQALGSQLKLNQ--HCIDTAYNFFKMAV 115
Query: 106 ARNFTKGRRTEQVQASCLYLACRQKSKP 133
+ T GRR+ QV A+CLY+ CR + P
Sbjct: 116 NKRLTIGRRSNQVVAACLYIVCRTEGTP 143
>gi|407462999|ref|YP_006774316.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046621|gb|AFS81374.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 289
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 101/234 (43%), Gaps = 17/234 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQ 80
++ D ST + A LS + TI+ S+ ++R + +A ++ +
Sbjct: 51 LIHDMGLSTVINPINKDATGKPLSTSMKSTIERLRTWDSRSQAHEPQDRNLRQALGELTR 110
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+K+ I S ++ A Y A+ + +GR + A+ +Y ACR P L D +
Sbjct: 111 IKD--KIALSTNVLEKAAYLYRKALEKKLVRGRSISAMIAASIYAACRDTETPRTLKDVA 168
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
+ N+ ++ Y L L + + V+ + + + +L ++K+ A
Sbjct: 169 DAANVKRKDIARCYRLLHHELELK-----MPVVNSIQCISRISSKL--ELSEKIKRHAIK 221
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
+L + + + G+ P GL ALY++ L HG ++ D+ + + E T+ R
Sbjct: 222 VLQEAQNNKESAGKDPMGLAATALYIACLKHGGSITQRDLAEAAGVTEVTIRNR 275
>gi|448732993|ref|ZP_21715239.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445803326|gb|EMA53623.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 351
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 19/239 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQ 80
+ D STE + A + LS R +Q S+ ++ER + ++ +
Sbjct: 111 TMHDKGLSTEIDWRDQDARGNPLSTRQRRKMQRLRTWHSRSQTDGTQERNLRHGLGEIDR 170
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M +AL + S I A Y + N GR E V A+ LY A RQ + L
Sbjct: 171 MASALGLPAS--IRETASVIYRRVIDENLLIGRSVESVSAAALYAATRQSTSARSLDGIV 228
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
++ +G Y YI+ E + ++ DP+ L + L + ++ +R
Sbjct: 229 TVARMDKQSIGRTYR------YISRELGLEIEPPDPTDHLPRLCSVL--DLSTEIEQQSR 280
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
++L +G+ P GL AA+Y +L K ++S I ++ + + T+ R E
Sbjct: 281 ELLEIAIAAEAISGKNPVGLAAAAVYAGSLLCKEKVTQSSISEVASVSKVTIRNRYQEL 339
>gi|448363001|ref|ZP_21551605.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647623|gb|ELZ00597.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEGIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A DI+ + +G+ P+G
Sbjct: 238 --DVSKAVETKAVDIIEQTTEQGLHSGKSPTGF 268
>gi|409730105|ref|ZP_11271696.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722749|ref|ZP_21705280.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788886|gb|EMA39587.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 327
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 134 SKERNLKQALGEIDRMASAL--GLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYA 191
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + EL Y + + L + ++ DP+ ++ +F
Sbjct: 192 AARQAGTPRSLDEIATVSRVGKMELTRTYRYVVRELGLE-----IQPADPASYVPRFASD 246
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++ AR +L + K + I +G+ P GL AA+Y +AL K ++ + ++
Sbjct: 247 L--DLSEESERRARQLLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVAD 304
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 305 ISEVTIRNRYKEL 317
>gi|448528671|ref|ZP_21620179.1| transcription initiation factor TFB [Halorubrum hochstenium ATCC
700873]
gi|445710411|gb|ELZ62225.1| transcription initiation factor TFB [Halorubrum hochstenium ATCC
700873]
Length = 308
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 109/255 (42%), Gaps = 25/255 (9%)
Query: 10 HVTGHRPYDSQLCCDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGNFVRTI------ 59
H R YD + C +R G L D STE +A G ++LSG + +
Sbjct: 54 HGPEWRAYDDEEC-ERTGAPLTAARHDRGLSTEIGRGTDAKG-NELSGQKRQRLARMRRE 111
Query: 60 --QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+ + + ER + ++R++ +AL + S+ + A + + A + +GR E
Sbjct: 112 QTRGRWRSKAERNLAHGLGEVRRLASALEL--SNSVRDQACQLFRSAQNEDLLRGRSIEA 169
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+ A+ +Y ACR L+ D S + + Y L + L + E V PS+
Sbjct: 170 IAAASVYGACRCNGLSRLVDDVSEMARVAESRVTNAYKTLNEELGLPAEP-----VSPSM 224
Query: 178 FLHKF-TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
F+ + +D P ++ AR + + +TTG P+G A LY + G +
Sbjct: 225 FVPRLASDLKCP---NEIRQRARALAEQAEERGVTTGVHPAGFAAACLYKAGREEGRWLT 281
Query: 237 KSDIVKIVHICEATL 251
+S+ + + +AT+
Sbjct: 282 QSEAADVANASKATV 296
>gi|448576224|ref|ZP_21642267.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445729904|gb|ELZ81498.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 332
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 10/202 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 139 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATASLYA 196
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + + EL Y + + L + +K DP ++ +F
Sbjct: 197 AARMADTPRSLDELEKVSRVEKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASE 251
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR++L K + +G+ P GL AA+Y +AL K ++S++ +
Sbjct: 252 L--GLSDEAERQARELLRGAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSAVAD 309
Query: 246 ICEATLMKRLIE-FENTDSGSL 266
I E T+ R E E DS L
Sbjct: 310 ISEVTIRNRYKELLEVQDSNML 331
>gi|448358436|ref|ZP_21547118.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445646069|gb|ELY99061.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 352
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 9/200 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V + LY
Sbjct: 160 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYA 217
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ RQ P L + + + E+ Y + + L + +K DP ++ +F
Sbjct: 218 SARQAGTPRSLDEIAGVSRVEKDEIARTYRYVIRELGLE-----VKPADPVSYVPRFASD 272
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L + + AR +L + K I +G+ P GL AA+Y AL K +++D+ ++
Sbjct: 273 L--DLSDETERRARQLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVAS 330
Query: 246 ICEATLMKRLIEFENTDSGS 265
I E T+ R E +SG+
Sbjct: 331 ISEVTIRNRYHELLEAESGA 350
>gi|448419798|ref|ZP_21580642.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674712|gb|ELZ27249.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 352
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC+Y
Sbjct: 159 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCVYA 216
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + S + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 217 AARMAGVPRSLDEISEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFGS 270
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G + + AR +L + K + +G+ P GL AA+Y +AL K +++ + ++
Sbjct: 271 EL--GLSDEAKMRARQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVA 328
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 329 DISEVTIRNRYHEL 342
>gi|448624536|ref|ZP_21670484.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445749741|gb|EMA01183.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 331
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 9/199 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 139 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYA 196
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ R S P L + ++ EL Y + + L + +K DP ++ +F
Sbjct: 197 SARMASTPRSLDELEKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASE 251
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L K + +G+ P GL AA+Y +AL K ++S++ +
Sbjct: 252 L--GLSDESERQARQLLRDAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVAD 309
Query: 246 ICEATLMKRLIEFENTDSG 264
I E T+ R E G
Sbjct: 310 ISEVTIRNRYKELLEVQDG 328
>gi|448306378|ref|ZP_21496284.1| transcription initiation factor TFB [Natronorubrum bangense JCM
10635]
gi|445598233|gb|ELY52297.1| transcription initiation factor TFB [Natronorubrum bangense JCM
10635]
Length = 332
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 18/204 (8%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL I D + A Y A+ N GR E + + L A
Sbjct: 137 ERNLKHALGEIDRMGSALGI--PDATLETASVIYRRALEENLLPGRSIEGMATAALNAAV 194
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ P + + + I+ E Y L + L + + DP +L ++ L
Sbjct: 195 RQTGVPRSIDELATVSRIDYLEAARAYRYLVRELELP-----MAPPDPLEYLPRYASAL- 248
Query: 188 PGGNKKVCDTAR---DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
+ +T R D+L + +G+ P GL AA+Y + G ++ D+ +
Sbjct: 249 ----EITAETERRAHDLLEGGMEAGLHSGKHPVGLAAAAIYAGSRLTGETLTQDDVSDAI 304
Query: 245 HICEATLMKR---LIEFENTDSGS 265
+ + T+ R L+E E T S S
Sbjct: 305 DVSKVTIRNRYQELLEHEITTSDS 328
>gi|448352225|ref|ZP_21541016.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|448365467|ref|ZP_21553847.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445631605|gb|ELY84834.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445655006|gb|ELZ07853.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEGIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A DI+ + +G+ P+G
Sbjct: 238 --DVSKAVETKAVDIIEQTTEQGLHSGKSPTGF 268
>gi|448439566|ref|ZP_21588130.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
gi|445691100|gb|ELZ43295.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
Length = 333
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 11/200 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A++ N GR E V + LY
Sbjct: 141 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYA 198
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L +F+ ++ EL Y + + L + ++ DP ++ +F R
Sbjct: 199 AARQAGNPRSLDEFTAVSRVDKMELTRTYRYVIRELKLE-----IQPADPESYVPRFVSR 253
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L K IT+G+ P GL +A+Y +AL K ++S + ++
Sbjct: 254 LDLSEETQRL---ARELLDGAKESGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSEVA 310
Query: 245 HICEATLMKRLIEFENTDSG 264
I E T+ R E + G
Sbjct: 311 DISEVTIRNRYKELLDASEG 330
>gi|335437109|ref|ZP_08559892.1| transcription initiation factor TFB [Halorhabdus tiamatea SARL4B]
gi|334896492|gb|EGM34641.1| transcription initiation factor TFB [Halorhabdus tiamatea SARL4B]
Length = 325
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 25/255 (9%)
Query: 10 HVTGHRPYDSQLCCDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGN--------FVR 57
H R YD + C +R G L D STE +A G +++SG
Sbjct: 71 HGPEWRAYDDEEC-ERTGAPLTAARHDRGLSTEIGRGTDAKG-NEISGQKRRRLARMRRE 128
Query: 58 TIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+ + + ER + ++R++ +AL + SD + A + + A + +GR E
Sbjct: 129 QTRGRWRSKAERNLAHGLGEVRRLASALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEA 186
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+ A+ +Y ACR L+ D S + + Y L + L + E V PS+
Sbjct: 187 IAAASVYGACRCNGLSRLVDDVSEMARLAESRVTNAYKTLNEELGLPAEP-----VSPSM 241
Query: 178 FLHKF-TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
F+ + +D P ++ AR + + +TTG P+G A LY + G +
Sbjct: 242 FVPRLASDLECP---DEIRQRARALAEQAEERGVTTGVHPAGFAAACLYKAGREEGRWLT 298
Query: 237 KSDIVKIVHICEATL 251
+S+ + + +AT+
Sbjct: 299 QSEAADVANASKATV 313
>gi|300711217|ref|YP_003737031.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299124900|gb|ADJ15239.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 335
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + A Y A+ + GR E V + LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPKN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + I+ EL Y + + L + ++ DP ++ +F
Sbjct: 191 AARQAGTPRSLDEIVQVSRIDRMELTRTYRYVIRELDLE-----VQPADPESYVPRFASD 245
Query: 186 LLPGGNKKVCD----TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIV 241
L ++ D AR++L++ K+ I +G+ P GL AA+Y +AL K +++++
Sbjct: 246 L------ELSDEAEHRARELLSNAKQSGIHSGKSPVGLAAAAVYAAALLTNEKVTQAEVS 299
Query: 242 KIVHICEATLMKRLIEFENTDSGS 265
++ +I E T+ R E D S
Sbjct: 300 EVANISEVTIRNRYKELLQADDTS 323
>gi|110667127|ref|YP_656938.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385802543|ref|YP_005838943.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109624874|emb|CAJ51283.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728035|emb|CCC39156.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 366
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC+Y
Sbjct: 173 SKERNLKQALGEVDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTSCVYA 230
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + + + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 231 AARMAGVPRSLDEIAEVSRVPKSEVARTYR------YIARELSLEVKPADPEQYVPRFAS 284
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G + + AR +L + K + +G+ P GL AA+Y +AL K +++ + ++
Sbjct: 285 EL--GLSDESTLRARQLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVA 342
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 343 DISEVTIRNRYHEL 356
>gi|291333561|gb|ADD93256.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C82]
Length = 242
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 108/238 (45%), Gaps = 17/238 (7%)
Query: 29 VLEDHNFSTEATFV-KNAAGQ---SQLSGNFVRT----IQSEYGASRERLMEKAFDDMRQ 80
+L D ST+ + K+ +G+ S+ F R +S + ER + A ++ +
Sbjct: 4 MLHDKGLSTDIDWQNKDYSGKTINSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 63
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
M + L + +S + A Y AV + +GR E V A+ LY ACRQ P L +
Sbjct: 64 MASRLELPKS--VREAAAVNYKKAVDKRLIRGRSIEGVAAASLYAACRQCGVPRTLDEIG 121
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
E+G Y + + L + + P ++ +F L G + V A +
Sbjct: 122 QASRTGRKEIGRTYRFMVRELKMK-----IMPTGPEDYISRFCSGL--GLDADVEAKAYE 174
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
++ + + +T+GR P+G+ + +Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 175 LIKAAQEKELTSGRGPTGIAASIIYIASVLCGKRRTQREVAEVAGVTEVTIRNRYKEL 232
>gi|126466031|ref|YP_001041140.1| transcription initiation factor IIB [Staphylothermus marinus F1]
gi|126014854|gb|ABN70232.1| Transcription initiation factor IIB (TFIIB) [Staphylothermus
marinus F1]
Length = 309
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 96/199 (48%), Gaps = 9/199 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
+S +S ER + +A +++ ++ + LN+ + + A R Y AV + +GR E V
Sbjct: 109 RSRIQSSIERNLAQAMNELDRLSDQLNLPRN--VKEEAARIYRRAVEKGLVRGRSIESVI 166
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+ +Y ACR+ P L + + + + ++ Y L + L I +++ DP F+
Sbjct: 167 AAAIYAACRELKIPRTLDEIAKHTKSSRKDIARCYRLLLKELDIKVQTS-----DPIDFI 221
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+ L G+ V A +IL + +T G P+GL AA+Y++A G + ++ +
Sbjct: 222 PRIAHALNLSGS--VMKKAAEILHRARSLGVTAGNDPAGLAAAAVYIAAQLSGERRTQKE 279
Query: 240 IVKIVHICEATLMKRLIEF 258
I + + E T+ R E
Sbjct: 280 IAHVAGVTEVTVRNRYKEL 298
>gi|399575499|ref|ZP_10769257.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399239767|gb|EJN60693.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 319
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 94/199 (47%), Gaps = 9/199 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G + A Y A+ N GR E V +C+Y
Sbjct: 126 SKERNLKQALGEIDRMASAL--GLPTNVRETASVIYRRALNDNLLPGRSIEGVSTACVYA 183
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ ++ E+ Y + + L + ++ DP ++ +F
Sbjct: 184 AARMAGVPRSLDEITDVSRVDKSEVARTYRYVVRELKLE-----VRPADPESYVPRFASS 238
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G +++ AR +L + K + +G+ P GL AA+Y +AL K +++ + ++
Sbjct: 239 L--GLSEETERRARQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVAD 296
Query: 246 ICEATLMKRLIEFENTDSG 264
I E T+ R E + G
Sbjct: 297 ISEVTIRNRYHELLEAEEG 315
>gi|448309529|ref|ZP_21499387.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445589952|gb|ELY44175.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 325
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + +S + A Y A+ + GR E V S LY
Sbjct: 133 SKERNLKQALGEIDRMASALGLPKS--VRETASVIYRRALEEDLLPGRSIEGVATSSLYA 190
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 191 AARQAGTPRSLDEITAVSRVEKDEIARTYRYVIRELGLE-----VQPADPENYVPRFASD 245
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L + + AR +L++ K I +G+ P GL AA+Y +AL K +++D+ +
Sbjct: 246 L--DLSDETERRARSLLSTAKESGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVAS 303
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 304 ISEVTIRNRYHEL 316
>gi|448736840|ref|ZP_21718923.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445805608|gb|EMA55811.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 210
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 11/190 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
+R+R ++ A ++ +M +AL + ES + A Y A+ N GR E V ++ LY
Sbjct: 16 ARDRNLKHALGEISRMASALGVPES--VRETAGVIYRRALEENLLPGRSVEGVASAALYA 73
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A RQ S P L + N + + Y Y++ E N+ + DP+ ++ +F
Sbjct: 74 ATRQASIPRSLDEIGNVSRVETVAIMRTY------RYVSRELNLTIPPSDPTDYVPRFAS 127
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
+L G ++V ARDIL +G+ P GL AALY +L ++ +I +
Sbjct: 128 KL--GAPEEVERAARDILEEAIDAGYPSGKSPVGLAAAALYAGSLITNNNLTQKEIGEAA 185
Query: 245 HICEATLMKR 254
+I + T+ R
Sbjct: 186 NISKVTIRNR 195
>gi|452207622|ref|YP_007487744.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083722|emb|CCQ37037.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 321
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ N GR E V + +Y
Sbjct: 128 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDNLLPGRSIEGVSTASVYA 185
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + + DP ++ +F
Sbjct: 186 AARQAGVPRSLDEVAGVSRVEKSEIARTYRYVVRELGLE-----VAPADPESYVPRFASD 240
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++ + AR +L + K + +G+ P GL AA+Y ++L K +++ + ++
Sbjct: 241 L--DLSEEAENRARKLLGNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKTTQAAVSEVAD 298
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 299 ISEVTIRNRYHEL 311
>gi|448633189|ref|ZP_21674096.1| transcription initiation factor IIB 5 [Haloarcula vallismortis ATCC
29715]
gi|445752153|gb|EMA03581.1| transcription initiation factor IIB 5 [Haloarcula vallismortis ATCC
29715]
Length = 306
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 99/236 (41%), Gaps = 18/236 (7%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGN--------FVRTIQSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G ++LSG + + + ER + ++R++ +
Sbjct: 79 DRGLSTEIGHRTDAHG-NELSGQKRRRLARMRREQTRGRWRSKAERNLAHGLGEVRRLAS 137
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
L + ES + A +F+ A + + +GR E + A+ +Y CR +P LL D +
Sbjct: 138 TLELSES--VRDQACQFFRSAQSEDLLRGRSIEAIAAASVYGTCRCNQRPLLLEDIVDAA 195
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
+ + Y L + L + + P+ F+ + L + + A ++ A
Sbjct: 196 RVESSRVTNAYRTLNRELKLP-----TPPMRPTSFIPRLISELEL--DHDIQRRANELAA 248
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259
+ +T G +P+G+ A +Y++A G ++S + + TL R E +
Sbjct: 249 CAEETALTNGCQPTGVAAACVYLAAQEQGALITQSTVASAAEVSVVTLRSRRDELQ 304
>gi|374724899|gb|EHR76979.1| transcription initiation factor TFIIB [uncultured marine group II
euryarchaeote]
Length = 337
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 16/195 (8%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
SRER + +A +R N G + A R Y F GR V A+C YL
Sbjct: 144 SRERNLVRANQFIRD-----NSGLPKPLQEEAARLYRRLSGEGFVTGRSIAGVTAACAYL 198
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TD 184
RQ++ P + D S ++ EL + Q+ + L N+ K P + KF +D
Sbjct: 199 VARQENLPRQIPDMSRSFDVTEKELSRLIRQVSRRL------NLHKISSPDQYFDKFISD 252
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
LP + + + W G+KP G+ A +Y ++ G ++S++ +
Sbjct: 253 LQLPPNTHIQVGHLWNAIQPHEDIW--QGKKPMGVAAALIYKASSESGSPRTQSEVCGVA 310
Query: 245 HICEATL--MKRLIE 257
++ E TL + RLI+
Sbjct: 311 NVSEVTLRGLLRLID 325
>gi|448321877|ref|ZP_21511352.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445602929|gb|ELY56900.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 317
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 14/192 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + +S V Y A+ + +GR E V + LY C
Sbjct: 130 ERNLQFALSEIDRMASALGVPQSTR--EVTSVLYRRALEEDLIRGRSIEGVATAALYAGC 187
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
RQ+ P L + + I E+ Y YI+ E + ++ +DP ++ +F L
Sbjct: 188 RQEGLPRSLEEVTEVSRIERIEVSRTYR------YISSELGLEIRPIDPKQYVPRFCSAL 241
Query: 187 -LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
LP ++V A++I+ D + +GR PSG AA+Y ++L K ++ ++ +
Sbjct: 242 DLP---QEVEAKAKEIIDETA-DPLLSGRGPSGFAAAAIYAASLLCNEKKTQREVADVAQ 297
Query: 246 ICEATLMKRLIE 257
+ E T+ R E
Sbjct: 298 VTEVTIRNRYQE 309
>gi|134046665|ref|YP_001098150.1| transcription initiation factor IIB [Methanococcus maripaludis C5]
gi|189029855|sp|A4G0F2.1|TF2B_METM5 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|132664290|gb|ABO35936.1| Transcription initiation factor IIB (TFIIB) [Methanococcus
maripaludis C5]
Length = 339
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 160 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 217
+I+ E N+ L +P ++ +F L LPG +V A IL +T+ R P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSSRGPT 288
Query: 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|313127155|ref|YP_004037425.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288376|ref|ZP_21479575.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293520|gb|ADQ67980.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569527|gb|ELY24099.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 321
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC+Y
Sbjct: 128 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCVYA 185
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + S + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 186 AARMAGVPRSLDEISEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFGS 239
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L K+ AR +L + K + +G+ P GL AA+Y +AL K +++ + +
Sbjct: 240 ELGLSDESKM--RARQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVA 297
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 298 DISEVTIRNRYHEL 311
>gi|41615067|ref|NP_963565.1| hypothetical protein NEQ276 [Nanoarchaeum equitans Kin4-M]
gi|40068791|gb|AAR39126.1| NEQ276 [Nanoarchaeum equitans Kin4-M]
Length = 315
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 15/210 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
+R ++ A ++++M + LN+ + E A R Y V + +GR + A LYL
Sbjct: 110 DRNLKIALHELKKMVDKLNMPKYVE--EEAARIYQKVVEKGLARGRNINTLLAGTLYLVI 167
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL- 186
R+ + P L + I+ ++ Y + + L I K + P+ F++++ L
Sbjct: 168 REYNIPRTLEELEKATGISKKDIAKAYRLIVRELGIKP-----KPISPADFVYRYASELN 222
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
LP +V TA +I+ K+ I +GR P G+ AALY++A+ HG I +I +
Sbjct: 223 LP---PEVTATAIEIIEEAKKKNIVSGRGPQGIAAAALYIAAIKHGKYVPLKKIGEIAKV 279
Query: 247 CEATLMKRLIEFENTDSGSLTIEDFMARKK 276
E T+ R E N SL I + + +K+
Sbjct: 280 TEVTIKNRYKEIIN----SLGIAEEIEKKR 305
>gi|399578576|ref|ZP_10772323.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
gi|399236462|gb|EJN57399.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
Length = 318
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 18/235 (7%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGNFVRTI--------QSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G++ LSG+ R + + + + ER + ++R++ +
Sbjct: 81 DRGLSTEIGRRTDAKGRT-LSGSKRRQLARLRREQTRGRFQSKAERNLAHGLGEVRRIAS 139
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
L + S I A + + A + GR E V A+ +Y CR +P D +
Sbjct: 140 TLEL--SGSIRDQACQLFQSAQREDLLLGRSIEAVAAASVYGVCRCHGRPISRDDLVDVA 197
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
++ + Y L + L + + V P L K L G K+V A+ +
Sbjct: 198 RVDHSGVTNTYKTLNRELGLPTQP-----VAPQSLLPKLASEL--GVEKRVRRRAQRLAE 250
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
IT G +PSG+ A LY+++ +G +++ + ++ ATL R E
Sbjct: 251 RAHETSITNGYQPSGVAAACLYLASQENGESLTQTQVAEVAGTTPATLRARRAEL 305
>gi|448303866|ref|ZP_21493812.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445592493|gb|ELY46680.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 296
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 19/207 (9%)
Query: 32 DHNFSTEATFVKNAAGQ--SQLSGNFVRTI---QSEYGASR-----ERLMEKAFDDMRQM 81
D STE + + S+++G R I + E+ +R ER F ++R++
Sbjct: 64 DRGLSTEIGYGSGTPSEYRSRITGRKRRQIARLRREHNRARISSKAERNQVYGFTEIRRI 123
Query: 82 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141
L++ D A + A + +GR E A+ +Y CR +S P + + +
Sbjct: 124 NTGLSL--PDSAREQACTLFKSAQSEGLFQGRSLEGFAAAAIYATCRTRSNPRTIDEITT 181
Query: 142 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 201
+ +EL A Y L + L + +DP+ +L ++ +L G + AR+
Sbjct: 182 VARADRHELTAAYDALNRELGLP-----TGPIDPTGYLPRYASKL--GLETAIERRAREH 234
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSA 228
L + ++ + +GR PSG+ A LY +A
Sbjct: 235 LTVLLQEGLISGRNPSGVAAACLYEAA 261
>gi|448616659|ref|ZP_21665369.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751314|gb|EMA02751.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 288
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 9/201 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
++ + RER AF ++R++ AL G + I A + A + +GR E
Sbjct: 97 RARISSKRERNQVYAFTEIRRVTGAL--GLPNHIRDQACSLFESAQNEDLLRGRSLEGFA 154
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+C+Y ACR + + + E A Y L + L + + DP+ +L
Sbjct: 155 AACVYAACRVAGISRSVEEVCDVSKSTESEHQAAYRALNRDLGLP-----VAPADPTEYL 209
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F +L ++ AR+ +A + D + G+ P G+ A LY +A G ++SD
Sbjct: 210 PRFATKL--DLDRDTERRAREYVAEARDDGLVAGKNPCGVAAACLYTAARDLGEDCTQSD 267
Query: 240 IVKIVHICEATLMKRLIEFEN 260
+ + TL K + +
Sbjct: 268 AADVADVTPVTLRKTYVALRD 288
>gi|448372152|ref|ZP_21557122.1| transcription initiation factor TFB [Natrialba aegyptia DSM 13077]
gi|445646613|gb|ELY99598.1| transcription initiation factor TFB [Natrialba aegyptia DSM 13077]
Length = 308
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 105/250 (42%), Gaps = 25/250 (10%)
Query: 15 RPYDSQLCCDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGN--------FVRTIQSE 62
R YDS+ C +R G L D STE +A G +++SG
Sbjct: 59 RAYDSEEC-ERTGAPLTAARHDRGLSTEIGRGTDAKG-NEISGQKRRRLARMRREQAHGR 116
Query: 63 YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASC 122
+ + ER + ++R++ +AL + S + A + + A + +GR E + A+
Sbjct: 117 FQSKAERNLAHGLGEVRRLASALEL--SGSVRDQACQLFRSAQNEDLLRGRSIEAIAAAS 174
Query: 123 LYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF 182
+Y ACR + L+ D S + + Y L + L + E V PS+F+ +
Sbjct: 175 VYGACRCNGRSRLVDDVSEMARVAESRVTNAYKTLNEELSLPAEP-----VAPSMFVPRL 229
Query: 183 -TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIV 241
+D P ++ AR + + +TTG P+G A LY + G ++ D+
Sbjct: 230 ASDLECP---DEIRQRARTLAEQAEERGVTTGVHPAGFAAACLYKAGQEQGQWVTQRDVA 286
Query: 242 KIVHICEATL 251
+ ++ T+
Sbjct: 287 ESGNVTPTTV 296
>gi|448524328|ref|ZP_21619310.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445700398|gb|ELZ52399.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 269
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 12/191 (6%)
Query: 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 133
A ++ +M +AL G D + A Y A+ + GR E V + LY A RQ P
Sbjct: 84 ALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTP 141
Query: 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 193
L + + + E+ Y + + L + ++ DP ++ +F L G + +
Sbjct: 142 RSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GLSDE 194
Query: 194 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 253
AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T+
Sbjct: 195 AERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRN 254
Query: 254 R---LIEFENT 261
R L+E E++
Sbjct: 255 RYHELLEAEDS 265
>gi|448329811|ref|ZP_21519107.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613430|gb|ELY67131.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 319
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 128 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 186 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 239
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A DI+ + +G+ P+G
Sbjct: 240 --DVDKDVETKAIDIIDRTTEQGLHSGKSPTGF 270
>gi|448337251|ref|ZP_21526332.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
gi|445626359|gb|ELY79707.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
Length = 308
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 18/228 (7%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGN--------FVRTIQSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G ++LSG + + + ER + ++R++ +
Sbjct: 79 DRGLSTEIGRGTDANG-NELSGQKRRRLFRMRREQTRGRFQSKAERNLAHGLSEVRRVSS 137
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
L + E+ I A + + A + +GR E + A+ +Y ACR +P L D +
Sbjct: 138 VLELSET--IRDQACQLFRSAQNEDLLQGRSVEAMAAASVYGACRCNGRPRTLDDITESA 195
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 203
+ + Y L L + + V PS F+ + L + ++ AR +
Sbjct: 196 RVEQSRVTNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DVSDQIRQRARQLAE 248
Query: 204 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
+ + TTG +PSG A LY + G ++SD+ + ++ T+
Sbjct: 249 ASESTGATTGVRPSGFAAACLYKAGREDGRWLTQSDVADVANVSVVTV 296
>gi|383624782|ref|ZP_09949188.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 325
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEISAVSRVDKMELTRTYRYVIRELGLE-----VQPADPESYVPRFVSD 244
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S +++ + +G+ P GL A +Y +AL K +++++ ++
Sbjct: 245 LDLSDETERM---ARELLDSARKEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVA 301
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 302 SISEVTIRNRYKEL 315
>gi|448393759|ref|ZP_21567818.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445663362|gb|ELZ16114.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 318
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRRALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEDIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G K V A +I+ + +G+ P+G
Sbjct: 238 DVG--KDVETKAVEIIDQTTEQGLHSGKSPTGF 268
>gi|433421758|ref|ZP_20405837.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|432198809|gb|ELK55052.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
Length = 318
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ + GR E V S LY
Sbjct: 125 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYA 182
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A R P L + ++ + E+ Y + + L + +K DP ++ +F
Sbjct: 183 AARMAGTPRSLDEITSVSRVEKDEIARTYRYVVRELSLE-----IKPADPEQYVPRFASE 237
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L G + + AR +L K I +G+ P GL AA+Y +AL K +++ + +
Sbjct: 238 L--GLSDEAERQARQLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVAD 295
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 296 ISEVTIRNRYHEL 308
>gi|389845720|ref|YP_006347959.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243026|gb|AFK17972.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 289
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 9/201 (4%)
Query: 60 QSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQ 119
++ + RER AF ++R++ AL G + I A + A + +GR E
Sbjct: 98 RARISSKRERNQVYAFTEIRRVTGAL--GLPNHIRDQACSLFESAQNEDLLRGRSLEGFA 155
Query: 120 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFL 179
A+C+Y ACR + + + E A Y L + L + + DP+ +L
Sbjct: 156 AACVYAACRVAGISRSVEEVCDVSKSTESEHQAAYRALNRDLGLP-----VAPADPTEYL 210
Query: 180 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
+F +L ++ AR+ +A + D + G+ P G+ A LY +A G ++SD
Sbjct: 211 PRFATKL--DLDRDTERRAREYVAEARDDGLVAGKNPCGVAAACLYTAARDLGEDCTQSD 268
Query: 240 IVKIVHICEATLMKRLIEFEN 260
+ + TL K + +
Sbjct: 269 AADVADVTPVTLRKTYVALRD 289
>gi|448312070|ref|ZP_21501821.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445603031|gb|ELY57000.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 323
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M ++L I S + VA Y A+ + +GR E V S LY AC
Sbjct: 134 ERNLQFALSEIDRMASSLAIPRS--VREVACVIYRRALDEDLIRGRSIEGVATSTLYAAC 191
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + + + E+G Y + Q L + + VDP ++ +F L
Sbjct: 192 RMEGIPRSLEEVATVSRVERKEIGRTYRYVAQELGLE-----MAPVDPKKYVPRFCSDLE 246
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 247 L--SEEVTAKANEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVT 304
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 305 EVTIRNRYQE 314
>gi|76801766|ref|YP_326774.1| transcription initiation factor TFB 3 [Natronomonas pharaonis DSM
2160]
gi|76557631|emb|CAI49214.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 319
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL G D + A Y A+ N GR E V + +Y
Sbjct: 126 SKERNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALDENLLPGRSIEGVSTASVYA 183
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + + + E+ Y + + L + ++ DP ++ +F
Sbjct: 184 AARQAGVPRSLDEVAGVSRVEKSEIARTYRYVVRELGLE-----VQPADPESYVPRFASE 238
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++ + AR +L + K + +G+ P GL AA+Y ++L K +++ + ++
Sbjct: 239 LE--LSEEAENRARQLLQNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKTTQAAVSEVAD 296
Query: 246 ICEATLMKRLIEF 258
I E T+ R E
Sbjct: 297 ISEVTIRNRYHEL 309
>gi|170594171|ref|XP_001901837.1| Transcription initiation factor IIB [Brugia malayi]
gi|158590781|gb|EDP29396.1| Transcription initiation factor IIB, putative [Brugia malayi]
Length = 309
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 116/291 (39%), Gaps = 41/291 (14%)
Query: 8 ARHVTGHRPYDSQLCCDRCGKVLEDH---------NFSTEATFVKNAAGQSQL------- 51
A V HR D L C CG V+ D +FS E K+ A S++
Sbjct: 21 AHLVEDHRAGD--LICPECGLVVGDRLVDVGTEWRSFSNE----KSGADPSRVGAPENPL 74
Query: 52 --SGNFVRTIQSEYGASRERLMEKAFDDM-RQMKNALN-IGESDEIVHVAK-------RF 100
S + +I +G S K ++M RQM L+ I E +H+ K +
Sbjct: 75 LGSADLSTSIAVGFGGSETNAQRKNMNNMDRQMSQGLSVIREMSARIHLPKSIEDGAAKI 134
Query: 101 YGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160
+ + +G+ E A+CLY+ACR++ P + ++ E+G C
Sbjct: 135 FKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEICAASRVSKKEIGR-----CFK 189
Query: 161 LYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLC 220
L I L+Q+ + F+ +F L G + A I + GR P +
Sbjct: 190 LIIKSLETSLEQITSADFMSRFCGNL--GLPHSIQAAATRIAKKAVELDLVAGRSPISIA 247
Query: 221 GAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271
AA+Y+++ K + +I +I E T+ K+ + +G L EDF
Sbjct: 248 AAAIYMASQASSNKKTAKEIGEIAGAAEVTV-KQTYKLLYPRAGELFPEDF 297
>gi|448399559|ref|ZP_21570819.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445668576|gb|ELZ21203.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 319
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 128 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 186 RKEGIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 239
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G K V A +I+ + +G+ P+G
Sbjct: 240 DVG--KDVETKAIEIIDQTTDQGLHSGKSPTGF 270
>gi|322371186|ref|ZP_08045738.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549176|gb|EFW90838.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 357
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + A Y A+ + GR E V + LY
Sbjct: 153 SKERNLKQALGEIDRMASALGLPKN--VRETASVIYRRALNEDLLPGRSIEGVATASLYA 210
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P + + + I+ E Y + + L + +K DP +L +F
Sbjct: 211 AARQSGVPRTMDEVTTVSRIDGMEFKRTYRYIVRELGLG-----VKPADPEQYLSRFESE 265
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L K+ A D+L + K IT+G+ P GL AALY +AL K ++ ++ +
Sbjct: 266 LDLTHETKR---RAHDLLKTAKGTGITSGKSPVGLAAAALYAAALLEDEKLTQDEVSDVS 322
Query: 245 HICEATLMKRLIEF 258
+ T+ R E
Sbjct: 323 DVSTVTIRNRYHEL 336
>gi|448470297|ref|ZP_21600440.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808271|gb|EMA58344.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 237
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 9/199 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S++R +++A ++ +M +AL G D + A Y A++ N GR E V + LY
Sbjct: 45 SKDRNLKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYA 102
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L +F+ ++ EL Y + + L + ++ DP ++ +F R
Sbjct: 103 AARQAGNPRSLDEFTAVSRVDKMELTRTYRYVIRELKLE-----IQPADPGSYVPRFVSR 157
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L +++ ARD+L K+ IT+G+ P GL +A+Y +AL K ++S + +
Sbjct: 158 L--DLSEETQRLARDLLDGAKQAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSAVAD 215
Query: 246 ICEATLMKRLIEFENTDSG 264
I E T+ R E N G
Sbjct: 216 ISEVTIRNRYKELLNASEG 234
>gi|448351752|ref|ZP_21540546.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445632312|gb|ELY85524.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 341
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 11/201 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 149 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVSTASLYA 206
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TD 184
+ RQ P L + S + E+ Y + + L + ++ DP ++ +F +D
Sbjct: 207 SARQAGTPRSLDEISAVSRVEKDEIARTYRYVIRELGLE-----VQPADPVSYVPRFASD 261
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L ++ AR +L + K I +G+ P GL AA+Y AL K +++D+ ++
Sbjct: 262 LELSDETER---RARTLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVA 318
Query: 245 HICEATLMKRLIEFENTDSGS 265
I E T+ R E D G+
Sbjct: 319 SISEVTIRNRYHELLEVDGGA 339
>gi|322788519|gb|EFZ14161.1| hypothetical protein SINV_13195 [Solenopsis invicta]
Length = 257
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 28/121 (23%)
Query: 418 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 477
DIDD E+D Y+ +E+E K +W ++N +YL +Q KE K +
Sbjct: 9 DIDDEELDSYILSEKESQSKSALWNKVNADYLIQQKEKEEKRLKEKEEGKP--------- 59
Query: 478 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 537
E++++R K+ PA TA EA +ML +K++SSKINY+VL
Sbjct: 60 -------------------ERKRRRTTSKKHRTPANTAGEAIEKMLQEKKISSKINYEVL 100
Query: 538 E 538
+
Sbjct: 101 K 101
>gi|448324011|ref|ZP_21513453.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|445619909|gb|ELY73423.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 323
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL G + + A Y A+ ++ +GR E V S LY AC
Sbjct: 132 ERNLKYALSEIDRMVSAL--GVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE + L+ +P F+ +F L
Sbjct: 190 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELGINLEPTNPRQFVPRFCSEL 243
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A DI+ + +G+ P+G
Sbjct: 244 --DVDKDVETKAIDIIDETTEKGLHSGKSPTGF 274
>gi|448436023|ref|ZP_21587039.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445683183|gb|ELZ35586.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 384
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 9/193 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + D + A Y A++ N GR E V + LY
Sbjct: 192 SKERNLKQALGEIDRMASALGL--PDNVRETASVIYRRALSENLLPGRSIEGVATAALYA 249
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L +F+ + EL Y + + L + ++ DP+ ++ +F R
Sbjct: 250 AARQVGNPRSLDEFTAVSRVEKMELTRTYRYVVRELGLR-----VQPADPTSYVPRFVSR 304
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L + + AR++L IT+G+ P GL AA+Y +AL K ++S + +
Sbjct: 305 LDL--SDETERRARELLDDAASAGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSDVAD 362
Query: 246 ICEATLMKRLIEF 258
+ E T+ R E
Sbjct: 363 VSEVTIRNRYKEL 375
>gi|448569928|ref|ZP_21639011.1| Zinc finger TFIIB-type domain protein [Haloferax lucentense DSM
14919]
gi|445723732|gb|ELZ75369.1| Zinc finger TFIIB-type domain protein [Haloferax lucentense DSM
14919]
Length = 309
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 22/237 (9%)
Query: 32 DHNFSTEATFVKNAAG-------QSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNA 84
D+ S E + ++A G Q QL ++ YG+ ER + A ++ +M +A
Sbjct: 81 DYGVSAEIGYKRDANGNRVSSKKQWQLHRLRREHRRARYGSKAERNLAHALQEIARMSSA 140
Query: 85 LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144
L++ S +V A + Y A R+ +GR E + A LY ACR + + +
Sbjct: 141 LDLPRS--VVEEASQVYRQAQHRDLIRGRSIEMMTAGSLYAACRCRGLQRRPGEIGSVAR 198
Query: 145 INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK-FTDRLLPGG--NKKVCDTARDI 201
+L Y L V +++P I + + RL +V A ++
Sbjct: 199 CTADQLRTGYRAL----------KVDMEIEPQIVTARTYVPRLASDCRVTSEVNARAYEL 248
Query: 202 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
R+ IT GR P+G+ A LY++ G ++++ ++ +TL R E
Sbjct: 249 ADLADRERITNGRNPAGVAAACLYLAGNERGSAKTQAEFAAAANVTVSTLRARYYEL 305
>gi|448331622|ref|ZP_21520885.1| transcription initiation factor TFB [Natrinema versiforme JCM
10478]
gi|445609188|gb|ELY62997.1| transcription initiation factor TFB [Natrinema versiforme JCM
10478]
Length = 296
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 20/229 (8%)
Query: 32 DHNFSTEATFVKNAAGQSQLSGNFVRTI--------QSEYGASRERLMEKAFDDMRQMKN 83
D STE +A G +LSG R + + + + ER + ++R++ +
Sbjct: 67 DRGLSTEIGHGTDAHG-DELSGQKRRQLARMRREQTRGRWRSKAERNLAHGLGEVRRLAS 125
Query: 84 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143
AL + ES I A + + A + +GR E + A+ +Y ACR L+ D S
Sbjct: 126 ALELSES--IRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCNGLSRLVDDVSEMA 183
Query: 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCDTARDIL 202
+ + VY L + L + E V PS+F+ + +D P ++ AR +
Sbjct: 184 RVAESRVTNVYKTLNEELGLPAEP-----VSPSMFVPRLASDLECP---DEIRQRARALA 235
Query: 203 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
+ +TTG P+G A LY + G +SD+ + ++ T+
Sbjct: 236 EQAEERGVTTGVHPAGFAAACLYKAGQEQGKWVMQSDVAETGNVTPTTI 284
>gi|260818773|ref|XP_002604557.1| hypothetical protein BRAFLDRAFT_220499 [Branchiostoma floridae]
gi|229289884|gb|EEN60568.1| hypothetical protein BRAFLDRAFT_220499 [Branchiostoma floridae]
Length = 153
Score = 57.0 bits (136), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 23 CDRCGKVLEDHNFSTEATFVKN-----------AAGQSQLSGNFVRTIQSEYGA-SRERL 70
C CG VLED+ +E TF ++ +A + + VR +G SR
Sbjct: 26 CTGCGSVLEDNIIVSEVTFAESGDRTSVIGQFVSADDGKGNAGMVRGFHHGFGKESRAIT 85
Query: 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 130
++ + Q+ + L + + + A F+ +AV + T+GR+T V A+CLYL CR +
Sbjct: 86 LQNGKRKITQLGHQLKLNQ--HCLDTAFNFFKMAVNKKLTRGRKTNHVVAACLYLVCRTE 143
Query: 131 SKPFLL 136
P +L
Sbjct: 144 GTPRIL 149
>gi|383625409|ref|ZP_09949815.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448700388|ref|ZP_21699496.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445779928|gb|EMA30843.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 321
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL G + A Y A+ ++ +GR E V S LY AC
Sbjct: 130 ERNLKYALSEIDRMVSAL--GVPTPVKETASVIYRRALEQDLIRGRSIEGVATSALYTAC 187
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 188 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 241
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G K V A +I+ + +G+ P+G
Sbjct: 242 DVG--KDVETKAVEIIEQTTEQGLHSGKSPTGF 272
>gi|393216052|gb|EJD01543.1| cyclin-like protein [Fomitiporia mediterranea MF3/22]
Length = 354
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 15/223 (6%)
Query: 40 TFVKNAAGQSQLSGNFVRTIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKR 99
T + G S ++ R ER M +AF D+ + ++ ++ I +AK+
Sbjct: 101 TVISYKDGGSGVARELQRAASRSQNTRSERNMLQAFRDISSWCDQFSLPKT--ISDIAKQ 158
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y A +G+ + V A+C+++ACRQ P + ++ LG Y L +
Sbjct: 159 LYKRADEEKLLRGKSLDAVIAACIFIACRQAHVPRTFREMCTLTHVPKKTLGQCYKTLEK 218
Query: 160 VLYIADE-SNVLKQ----------VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRD 208
+A SN Q +P L ++ + L G V TA +I++ K
Sbjct: 219 AFNLAAAGSNNTTQNSRPDPAATTTNPQDLLARYCNHL--GLPHLVQSTASEIISIGKEH 276
Query: 209 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251
T GR P + ++Y + G+ + D+ + + E+T+
Sbjct: 277 AFTDGRSPISIASGSIYFTTQLLGVPMTMKDLCENAGVSESTV 319
>gi|336254131|ref|YP_004597238.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338120|gb|AEH37359.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 95/194 (48%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 132 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 189
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + ++ DP ++ +F
Sbjct: 190 AARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VQPADPESYVPRFVSD 244
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S ++ + +G+ P GL A +Y +AL K +++++ ++
Sbjct: 245 LDLSDETERM---ARELLESARKAGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVA 301
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 302 SISEVTIRNRYKEL 315
>gi|336253520|ref|YP_004596627.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335337509|gb|AEH36748.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 332
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 13/217 (5%)
Query: 44 NAAGQSQLSGNFVRTIQSEYGA--SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFY 101
+A +SQL +RT + A ++ER ++ AF ++ +M +AL++ E A Y
Sbjct: 117 SARKRSQL--RRLRTWNERFTAKTAQERNLKHAFGELERMASALDLPEP--CRETAAVLY 172
Query: 102 GIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL 161
AV GR E + +CLY A RQ P F + + + + Y L + L
Sbjct: 173 RRAVDEELLPGRSIEAMATACLYAAARQHGTPRTWATFESVSRVEIGRVQRAYRYLSREL 232
Query: 162 YIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCG 221
+ + DP +L +F L + + AR+IL + K I G+ P+GL
Sbjct: 233 GLE-----IAPADPLQYLGQFASAL--SISDEAEHVAREILETAKEKGIHVGKSPAGLAA 285
Query: 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+A+Y +A + ++ I + + E T+ R E
Sbjct: 286 SAIYAAARLTNERVTQKTIDEQTGVSEFTIRNRYQEL 322
>gi|288930943|ref|YP_003435003.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288893191|gb|ADC64728.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 346
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 119/250 (47%), Gaps = 24/250 (9%)
Query: 15 RPYDSQLCCDRCGK------VLEDHNFSTEATFVKNAAG-----QSQLSGNFVRTIQSEY 63
R YDS+ R L D F+T +++ G ++++ +R QS+
Sbjct: 91 RSYDSERGMQRARAGPPVVLTLHDKGFTTTIGNDRDSHGNPLSPKTRIQFTRLRKWQSKI 150
Query: 64 --GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQAS 121
+S ER + ++ ++ ++ ++L + +S I A Y V+ N T+GR + + A+
Sbjct: 151 RTNSSAERNLVRSLMELERITSSLGLPKS--ITERAALIYRRVVSNNLTRGRCIDSIVAA 208
Query: 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181
+Y ACR+ P L + + + +++ +G Y L + L + + + ++ K
Sbjct: 209 AVYAACREAGLPRTLDEVAAHSSVDKRSVGRAYRFLARTLGLKP-----APITSTDYVPK 263
Query: 182 FTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIV 241
L G + +V + A +I+ ++ ++ R P+G+ AA+Y++++ G + ++ ++
Sbjct: 264 ICAAL--GVSGEVQERALEIVNEAEKSMVS--RSPAGVAAAAVYIASILLGERRTQREVA 319
Query: 242 KIVHICEATL 251
+ + E T+
Sbjct: 320 GVAGVTEVTI 329
>gi|257388456|ref|YP_003178229.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170763|gb|ACV48522.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 324
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 110/243 (45%), Gaps = 17/243 (6%)
Query: 28 KVLEDHNFSTEATFV-KNAAGQSQLSGNF-----VRTIQSEYGA--SRERLMEKAFDDMR 79
K++ D ST + K+A G S S +RT + S+ER +++A ++
Sbjct: 87 KMMHDKGLSTNIGWQDKDAYGNSLSSSQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 80 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 139
+M +AL + ++ + A Y A+ + GR E V S LY A RQ + P L +
Sbjct: 147 RMASALGLPKN--VRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQANNPRSLDEM 204
Query: 140 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199
++ + EL Y + + L + + P ++ +F L + + AR
Sbjct: 205 THVSRVERMELTRTYRYIIRELGLE-----VAPAKPESYVPRFCSEL--SLSDETERRAR 257
Query: 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259
+++ + + I +G+ P G+ AA+Y +AL K ++S++ + I E T+ R E
Sbjct: 258 ELIEAARDGGILSGKSPVGIAAAAVYAAALLTNEKVTQSEVSGVADISEVTIRNRYKELL 317
Query: 260 NTD 262
+ D
Sbjct: 318 DVD 320
>gi|448396803|ref|ZP_21569251.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673332|gb|ELZ25893.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 321
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 9/190 (4%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A + +M ++L I S + VA Y A+ + +GR E V S LY AC
Sbjct: 132 ERNLQFALSETDRMASSLGIPRS--VREVACVMYRRALDEDLIRGRSIEGVATSTLYAAC 189
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
R + P L + S + E+G Y + Q L + ++ V+P ++ +F L
Sbjct: 190 RMEGIPRSLEEVSGVSRVERKEIGRTYRYVAQELGLE-----MEPVNPKKYVPRFCSELE 244
Query: 188 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247
+++V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + +
Sbjct: 245 L--SEEVQAKANEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVT 302
Query: 248 EATLMKRLIE 257
E T+ R E
Sbjct: 303 EVTIRNRYQE 312
>gi|16081990|ref|NP_394404.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195242|sp|Q9HJM2.1|TF2B2_THEAC RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10640260|emb|CAC12074.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 307
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+G +I A Y AV +N +GR E + + +Y ACR+ + P L + S +N
Sbjct: 133 LGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEISKASEVN 192
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
++G Y L + L + LK P ++ +F ++L +K+ + DI+
Sbjct: 193 KKKIGKAYRHLAKELDLN-----LKPTTPFSYISQFCNKL--DLDKQAIVISEDIVRQAM 245
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
I++G+ P+G+ AA+Y++++ G ++ +I +I + E T+ R E
Sbjct: 246 SMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRYKEI 297
>gi|448417415|ref|ZP_21579351.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445677903|gb|ELZ30399.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 296
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 9/196 (4%)
Query: 67 RERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126
RER AF ++R++ +AL++ E I A + A + +GR E A+C+Y A
Sbjct: 109 RERNQVYAFTEIRRLASALSLPE--RIRDHACSLFRSAQKEDLLRGRSLEGFAAACVYAA 166
Query: 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186
CR + + + E A Y L + L + + VDP+ ++ +F RL
Sbjct: 167 CRAANVSRTVGEVVAEAKATRAEQTAAYDALNRELGLP-----VGPVDPAEYVPRFATRL 221
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
+++ AR+ +A I+TGR P G+ LY +A ++++ + +
Sbjct: 222 --DLSREAERRAREYVAQAVDAGISTGRNPGGVAAGCLYTAARDLNADVTQAEAAAVADV 279
Query: 247 CEATLMKRLIEFENTD 262
TL K + D
Sbjct: 280 TPVTLRKTYVALRERD 295
>gi|448318045|ref|ZP_21507583.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445600803|gb|ELY54805.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 319
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 31/216 (14%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 128 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALDQDLIRGRSIEGVATSALYTAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 186 RKEGIPRSLEEVTGVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 239
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246
+K V A +I+ + +G+ P+G AA+Y + L +
Sbjct: 240 --DVDKNVESKAIEIIDETTTQGLHSGKSPTGFAAAAIYAAGL----------------L 281
Query: 247 CEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGV 282
CE T+ +R + D+ T+ R +E E +
Sbjct: 282 CEETIPQRAV----ADTAQTTVVTVRNRYREQLEAI 313
>gi|449549470|gb|EMD40435.1| hypothetical protein CERSUDRAFT_111033 [Ceriporiopsis subvermispora
B]
Length = 351
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 13/192 (6%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER + +AF D+ + ++ ++ I +AK+ Y + +G+ + V A+C+++AC
Sbjct: 128 ERNLLQAFRDISNWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIAC 185
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIAD-------ESNVLKQVDPSIFLH 180
RQ P + N +++ LG Y L Q + S P L
Sbjct: 186 RQAHVPRTFREICNLTHVSKKVLGQCYKALEQAFNLTPGASQDRHSSTPSGTTGPEDLLI 245
Query: 181 KFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 239
++ + L LP + +C D++ + I GR P + G A+Y + G D
Sbjct: 246 RYCNHLDLPPNVQPIC---ADVIKKARELGIADGRSPVSIAGGAIYFTCHLLGKVKPARD 302
Query: 240 IVKIVHICEATL 251
I + + E T+
Sbjct: 303 ISSVAGVSEGTI 314
>gi|448309192|ref|ZP_21499054.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
gi|445591113|gb|ELY45322.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
Length = 316
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A +I+ + + +G+ P+G
Sbjct: 238 --NVDKDVETKAVEIIDQTTQQGLHSGKSPTGF 268
>gi|448305351|ref|ZP_21495283.1| transcription initiation factor TFB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445589198|gb|ELY43434.1| transcription initiation factor TFB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 334
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 15/194 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL I D + A Y A+ N GR E + + L A
Sbjct: 139 ERNLKHALGEIDRMGSALGI--PDATLETASVIYRRALEENLLPGRSIEGMATAALNAAV 196
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187
RQ P + + + I+ E Y L + L + + DP +L ++ L
Sbjct: 197 RQTGVPRSIDELATVSRIDYLEAARAYRYLVRELELP-----MAPPDPLEYLPRYASAL- 250
Query: 188 PGGNKKVCDTAR---DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
+ +T R D+L + +G+ P GL AA+Y + G +++D+ +
Sbjct: 251 ----EITAETERRAHDLLEGGMEAGLHSGKHPVGLAAAAIYAGSRLTGEALTQADVSDAI 306
Query: 245 HICEATLMKRLIEF 258
+ + T+ R E
Sbjct: 307 DVSKVTIRNRYQEL 320
>gi|448605946|ref|ZP_21658539.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445741269|gb|ELZ92773.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 335
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC Y
Sbjct: 142 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCTYA 199
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + + + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 200 AARMAGVPRSLDEIAEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFAS 253
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L K+ AR +L + K + +G+ P GL AA+Y +AL K +++ + +
Sbjct: 254 ELGLSDESKM--RARQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVA 311
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 312 DISEVTIRNRYHEL 325
>gi|448580042|ref|ZP_21644871.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448590025|ref|ZP_21650084.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445722715|gb|ELZ74372.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445735140|gb|ELZ86693.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 334
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC Y
Sbjct: 141 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCTYA 198
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + + + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 199 AARMAGVPRSLDEIAEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFAS 252
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L K+ AR +L + K + +G+ P GL AA+Y +AL K +++ + ++
Sbjct: 253 ELGLSDESKM--RARKLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVA 310
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 311 DISEVTIRNRYHEL 324
>gi|448364802|ref|ZP_21553379.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445657641|gb|ELZ10466.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 339
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 95/201 (47%), Gaps = 11/201 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 147 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVSTASLYA 204
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TD 184
+ RQ P L + + + E+ Y + + L + ++ DP ++ +F +D
Sbjct: 205 SARQAGTPRSLDEIAGVSRVEKDEIARTYRYVIRELGLE-----VQPADPVSYVPRFASD 259
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L ++ AR +L + K I +G+ P GL AA+Y AL K +++D+ ++
Sbjct: 260 LELSDETER---RARTLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVA 316
Query: 245 HICEATLMKRLIEFENTDSGS 265
I E T+ R E D G+
Sbjct: 317 SISEVTIRNRYHELLEVDGGA 337
>gi|429193443|ref|YP_007179121.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429137661|gb|AFZ74672.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 340
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL G + + A Y A+ ++ +GR E V S LY AC
Sbjct: 149 ERNLKYALSEIDRMVSAL--GVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTAC 206
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE + L+ +P F+ +F L
Sbjct: 207 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELGINLEPTNPRQFVPRFCSEL 260
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A DI+ + +G+ P+G
Sbjct: 261 --DVDKDVETKAIDIIDETTEKGLHSGKSPTGF 291
>gi|448613363|ref|ZP_21663243.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740260|gb|ELZ91766.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 335
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC Y
Sbjct: 142 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCTYA 199
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + + + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 200 AARMAGVPRSLDEIAEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFAS 253
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L K+ AR +L + K + +G+ P GL AA+Y +AL K +++ + +
Sbjct: 254 ELGLSDESKM--RARKLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVA 311
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 312 DISEVTIRNRYHEL 325
>gi|448718282|ref|ZP_21703005.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445784444|gb|EMA35255.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 325
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL G + + A Y A+ ++ +GR E V S LY AC
Sbjct: 134 ERNLKYALSEIDRMVSAL--GVPNPVKETASVIYRRALEQDLIRGRSIEGVATSALYTAC 191
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 192 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 245
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G K + A +I+ + +G+ P+G
Sbjct: 246 DVG--KDIETKAVEIIDRTTEQGLHSGKSPTGF 276
>gi|448561229|ref|ZP_21634581.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582139|ref|ZP_21645643.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448625327|ref|ZP_21671094.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445721461|gb|ELZ73129.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445731787|gb|ELZ83370.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445749089|gb|EMA00535.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 335
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC Y
Sbjct: 142 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCTYA 199
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + + + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 200 AARMAGVPRSLDEIAEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFAS 253
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L K+ AR +L + K + +G+ P GL AA+Y +AL K +++ + +
Sbjct: 254 ELGLSDESKM--RARQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVA 311
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 312 DISEVTIRNRYHEL 325
>gi|448356139|ref|ZP_21544886.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445633353|gb|ELY86541.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 364
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 9/200 (4%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + D + A Y A+ + GR E V + LY
Sbjct: 172 SKERNLKQALGEIDRMASALGL--PDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYA 229
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
+ RQ P L + + E+ Y + + L + +K DP ++ +F
Sbjct: 230 SARQAGTPRSLDEIEGVSRVEKDEIARTYRYVIRELGLE-----VKPADPVSYVPRFASD 284
Query: 186 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245
L + + AR +L + K I +G+ P GL AA+Y AL K +++D+ ++
Sbjct: 285 L--DLSDETERRARQLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVAS 342
Query: 246 ICEATLMKRLIEFENTDSGS 265
I E T+ R E + G+
Sbjct: 343 ISEVTIRNRYHELLEAEGGA 362
>gi|448506641|ref|ZP_21614597.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445699591|gb|ELZ51615.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
Length = 179
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+G D + A Y A+ + GR E V + LY A RQ P L + + +
Sbjct: 5 LGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGVSRVE 64
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
E+ Y + + L + ++ DP ++ +F L G + + AR +L + K
Sbjct: 65 KDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GLSDEAERRARSLLDTAK 117
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR---LIEFENT 261
I +G+ P GL AA+Y ++L K ++S++ ++ +I E T+ R L+E E++
Sbjct: 118 EQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRYHELLEAEDS 175
>gi|374635845|ref|ZP_09707435.1| Transcription factor TFIIB cyclin-related protein [Methanotorris
formicicus Mc-S-70]
gi|373560981|gb|EHP87227.1| Transcription factor TFIIB cyclin-related protein [Methanotorris
formicicus Mc-S-70]
Length = 821
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 100 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159
Y AV + +GR E V A+ LY ACR+ P L + S ++ E+G Y L +
Sbjct: 660 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCRVPRTLDEISEASRVDRKEIGRTYRFLSR 719
Query: 160 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 218
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 720 ELGIK-----LAPTNPIDYVPRFASELGLPG---EVESKAIAILQKAAEKGLTSGRGPTG 771
Query: 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 258
+ AA+Y++++ G + ++ D+ ++ + E T+ R E
Sbjct: 772 VAAAAIYIASVLLGNRRTQRDVAEVAGVTEVTIRNRYKEL 811
>gi|284176274|ref|YP_003406551.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284017931|gb|ADB63878.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 318
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRRALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEDIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
G K V A +I+ + +G+ P+G
Sbjct: 238 DVG--KDVETKAVEIIDRTTDQGLHSGKSPTGF 268
>gi|448362505|ref|ZP_21551111.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647985|gb|ELZ00949.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 341
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 95/201 (47%), Gaps = 11/201 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 149 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVSTASLYA 206
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TD 184
+ RQ P L + + + E+ Y + + L + ++ DP ++ +F +D
Sbjct: 207 SARQAGTPRSLDEIAGVSRVEKDEIARTYRYVIRELGLE-----VQPADPVSYVPRFASD 261
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L ++ AR +L + K I +G+ P GL AA+Y AL K +++D+ ++
Sbjct: 262 LELSDETER---RARTLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVA 318
Query: 245 HICEATLMKRLIEFENTDSGS 265
I E T+ R E D G+
Sbjct: 319 SISEVTIRNRYHELLEVDGGA 339
>gi|383625830|ref|ZP_09950236.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|448701382|ref|ZP_21699683.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|445778412|gb|EMA29359.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
Length = 308
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 106/255 (41%), Gaps = 25/255 (9%)
Query: 10 HVTGHRPYDSQLCCDRCGKVL----EDHNFSTEATFVKNAAGQSQLSGN--------FVR 57
H R YD + C +R G L D STE +A G ++LS
Sbjct: 54 HGPEWRAYDGEEC-ERTGAPLTAARHDRGLSTEIGRGTDAKG-NELSAKKRRRLARMRRE 111
Query: 58 TIQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQ 117
+S + + ER + ++R++ +AL + S + + A + A + +GR E
Sbjct: 112 QTRSRWRSKAERNLAHGLSEVRRLASALELSVS--VRNQACHLFRSAQNEDLLRGRSIEA 169
Query: 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI 177
+ A+ +Y ACR L+ D S + + Y L + L + E + PS+
Sbjct: 170 IAAASVYGACRCNGLSRLVDDISEMARVAESRVTNAYKTLNEELGLPAEP-----ISPSM 224
Query: 178 FLHKF-TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFS 236
F+ + +D P ++ AR + + +TTG P+G A LY + G +
Sbjct: 225 FVPRLASDLECP---DEIRQRARTLAEQAEESGVTTGVHPAGFAAACLYKAGREEGRWLT 281
Query: 237 KSDIVKIVHICEATL 251
+S+ + + +AT+
Sbjct: 282 QSEAADVANASKATV 296
>gi|126459199|ref|YP_001055477.1| transcription initiation factor IIB [Pyrobaculum calidifontis JCM
11548]
gi|126248920|gb|ABO08011.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum
calidifontis JCM 11548]
Length = 331
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 15/201 (7%)
Query: 59 IQSEYGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQV 118
+Q+ Y ER +A ++ ++K+++ G V A Y A+ + +GR E +
Sbjct: 134 VQTSY----ERNFIQAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAM 187
Query: 119 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSI 177
A+ LY+ACR P L + Y + E+ Y L + E NV + DP +
Sbjct: 188 AAAALYMACRMLKMPRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVL 241
Query: 178 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 237
++ + ++L G + A DIL K+ IT G+ P+GL AA+Y+++L G ++
Sbjct: 242 YISRIAEQLKLSG--EAIKLAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMLGDNKTQ 299
Query: 238 SDIVKIVHICEATLMKRLIEF 258
D + E T+ R E
Sbjct: 300 KDFAVAAGVTEVTVRNRYKEL 320
>gi|448296681|ref|ZP_21486735.1| transcription factor TFIIB cyclin-like protein, partial
[Halalkalicoccus jeotgali B3]
gi|445580974|gb|ELY35340.1| transcription factor TFIIB cyclin-like protein, partial
[Halalkalicoccus jeotgali B3]
Length = 238
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + ++ + A Y A+ + GR E V + LY
Sbjct: 36 SKERNLKQALGEIDRMASALGLPKN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 93
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + I+ EL Y + + L + ++ DP ++ +F
Sbjct: 94 AARQAGTPRSLDEIVQVSRIDRMELTRTYRYVIRELDLE-----VQPADPESYVPRFASD 148
Query: 186 LLPGGNKKVCD----TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIV 241
L ++ D AR++L++ K+ I +G+ P GL AA+Y +AL K +++++
Sbjct: 149 L------ELSDEAEHRARELLSNAKQSGIHSGKSPVGLAAAAVYAAALLTNEKVTQAEVS 202
Query: 242 KIVHICEATLMKRLIEFENTDSGS 265
++ +I E T+ R E D S
Sbjct: 203 EVANISEVTIRNRYKELLQADDTS 226
>gi|257076877|ref|ZP_05571238.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 305
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 90/185 (48%), Gaps = 11/185 (5%)
Query: 87 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 146
+G +I A Y AV +N +GR E + + +Y +CR + P L + S +N
Sbjct: 131 LGIPKDIKESAALIYRKAVEKNLIRGRSIESIVCASIYASCRMINIPRTLDEISKVSEVN 190
Query: 147 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206
++G Y L + L + L+ P ++ +F ++L +K+V + I+
Sbjct: 191 KKKIGKAYRHLAKELALN-----LQPTTPYSYVSQFCNKL--DLDKQVIMDSEHIIRLAG 243
Query: 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 266
++TG+ P+G+ AA+Y++A+ +G + ++ D+ ++ + E T+ R E S L
Sbjct: 244 ESGLSTGKGPTGIAAAAIYIAAMKNGKQRTQKDVARVSGVTEVTIRNRYKEI----SKKL 299
Query: 267 TIEDF 271
I+D
Sbjct: 300 GIDDV 304
>gi|115702419|ref|XP_796335.2| PREDICTED: transcription initiation factor IIB-like
[Strongylocentrotus purpuratus]
Length = 321
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 11/188 (5%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S R + AF ++ M + +N+ ++ IV A + + +GR + + A+CLY
Sbjct: 113 SSTNRTLINAFREIGAMADRINLPKT--IVDRAHTLFKQVNDQRTLRGRSNDAIAAACLY 170
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + +N E+G + + + L E+NV+ + F+ +F
Sbjct: 171 IACRQEGVPRTFKEICAVSRVNKREIGRCFKLILKAL----ETNVV-LITTGDFMSRFCS 225
Query: 185 RL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243
L LP KV A I + GR P + AA+Y+++ K S+ +I +I
Sbjct: 226 NLSLP---PKVQRAATHIARKADELDLVAGRSPISVTAAAIYMASQASEEKRSQKEIGEI 282
Query: 244 VHICEATL 251
+ + T+
Sbjct: 283 AGVADVTI 290
>gi|329764985|ref|ZP_08256572.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393795852|ref|ZP_10379216.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329138522|gb|EGG42771.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 305
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 17/234 (7%)
Query: 29 VLEDHNFSTEATFVKNAAGQSQLSGNFVRTIQ--------SEYGASRERLMEKAFDDMRQ 80
+ D ST + A L+ + TI+ S+ S +R + +A ++ +
Sbjct: 69 TMHDMGLSTIINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELNR 128
Query: 81 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 140
+K+ L++ SD ++ A Y A+ + +GR + AS LY ACR P L D
Sbjct: 129 LKDKLSL--SDAVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDTETPRTLNDVG 186
Query: 141 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200
N+ ++ Y L + L + + VDP L + R+ G +K A
Sbjct: 187 EAANLKKKDIARCYRLLHRELELK-----MPVVDPIQCLARIASRI--GITEKTKRYAAK 239
Query: 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 254
+L + + G+ P GL AALY++ + +G ++ DI + + E T+ R
Sbjct: 240 VLKISQEHEESAGKDPMGLAAAALYLACVKNGEDITQRDIAEAASVTEVTIRNR 293
>gi|148224786|ref|NP_001088125.1| general transcription factor 2B [Xenopus laevis]
gi|52430498|gb|AAH82943.1| LOC494830 protein [Xenopus laevis]
Length = 316
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 11/194 (5%)
Query: 65 ASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLY 124
+S +R M AF ++ M + +N+ + IV + + KGR + + ++CLY
Sbjct: 108 SSSDRAMMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRSNDAIASACLY 165
Query: 125 LACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD 184
+ACRQ+ P + I+ E+G + + + L E+NV + F+ +F
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETNV-DLITTGDFMSRFCS 220
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L G K+V A I + GR P + AA+Y+++ K ++ +I I
Sbjct: 221 NL--GLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIA 278
Query: 245 HICEATLMK--RLI 256
+ + T+ + RLI
Sbjct: 279 GVADVTIRQSYRLI 292
>gi|389846232|ref|YP_006348471.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616151|ref|ZP_21664861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243538|gb|AFK18484.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750806|gb|EMA02243.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 335
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 11/194 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V SC Y
Sbjct: 142 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCTYA 199
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTD 184
A R P L + + + E+ Y YIA E ++ +K DP ++ +F
Sbjct: 200 AARMAGVPRSLDEIAEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFAS 253
Query: 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L K+ AR +L + K + +G+ P GL AA+Y +AL K +++ + +
Sbjct: 254 ELGLSDESKM--RARKLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVA 311
Query: 245 HICEATLMKRLIEF 258
I E T+ R E
Sbjct: 312 DISEVTIRNRYHEL 325
>gi|448720890|ref|ZP_21703484.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445780503|gb|EMA31385.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 355
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 100/202 (49%), Gaps = 12/202 (5%)
Query: 66 SRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYL 125
S+ER +++A ++ +M +AL + E+ + A Y A+ + GR E V + LY
Sbjct: 162 SKERNLKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYA 219
Query: 126 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR 185
A RQ P L + S ++ EL Y + + L + ++ DP ++ +F
Sbjct: 220 AARQAGTPRSLDEISAVSRVDKMELTRTYRYVIRELGLE-----VQPADPESYVPRFVSD 274
Query: 186 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244
L L +++ AR++L S + + + +G+ P GL A +Y +AL K +++++ ++
Sbjct: 275 LDLSDETERM---ARELLDSAREEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVA 331
Query: 245 HICEATLMKRLIE-FENTDSGS 265
I E T+ R E E +DS +
Sbjct: 332 SISEVTIRNRYKELLEASDSAA 353
>gi|448302684|ref|ZP_21492657.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445595257|gb|ELY49368.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 316
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127
ER ++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY AC
Sbjct: 126 ERNLKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTAC 183
Query: 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL 186
R++ P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 184 RKEDIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL 237
Query: 187 LPGGNKKVCDTARDILASMKRDWITTGRKPSGL 219
+K V A +I+ + + +G+ P+G
Sbjct: 238 --DVDKDVETKAVEIIDETTQQGLHSGKSPTGF 268
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,508,649,547
Number of Sequences: 23463169
Number of extensions: 345869454
Number of successful extensions: 1527197
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 2652
Number of HSP's that attempted gapping in prelim test: 1485297
Number of HSP's gapped (non-prelim): 29258
length of query: 565
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 417
effective length of database: 8,886,646,355
effective search space: 3705731530035
effective search space used: 3705731530035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)