Query 008455
Match_columns 565
No_of_seqs 268 out of 1162
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 03:58:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 7.3E-56 2.5E-60 464.7 9.6 264 3-271 23-328 (345)
2 3k7a_M Transcription initiatio 100.0 6E-54 2E-58 450.7 6.9 262 2-273 22-330 (345)
3 1ais_B TFB TFIIB, protein (tra 100.0 1.3E-39 4.3E-44 316.2 23.6 191 64-261 2-192 (200)
4 1c9b_A General transcription f 100.0 9.5E-37 3.2E-41 297.6 19.4 195 68-272 2-196 (207)
5 1zp2_A RNA polymerase II holoe 99.9 1.3E-22 4.6E-27 201.5 19.3 181 71-261 28-217 (235)
6 2i53_A Cyclin K; cell cycle, t 99.8 2.3E-19 7.9E-24 180.1 20.3 181 72-261 42-248 (258)
7 2ivx_A Cyclin-T2; transcriptio 99.8 1.1E-18 3.7E-23 175.3 22.4 188 66-262 25-238 (257)
8 3rgf_B Cyclin-C; protein kinas 99.8 6.2E-18 2.1E-22 172.7 21.0 185 66-261 37-239 (285)
9 2b9r_A Human cyclin B1; cell c 99.8 3.9E-18 1.3E-22 172.8 18.5 179 73-260 40-221 (269)
10 2cch_B Cyclin A2, cyclin-A; co 99.8 2.2E-17 7.6E-22 166.3 19.1 181 72-260 40-224 (260)
11 2pk2_A Cyclin-T1, protein TAT; 99.7 5E-18 1.7E-22 178.7 13.7 188 67-263 33-246 (358)
12 2w96_A G1/S-specific cyclin-D1 99.7 6.1E-17 2.1E-21 164.0 18.8 180 73-261 59-254 (271)
13 1ngm_B Transcription factor II 99.7 1.5E-18 5.2E-23 139.2 2.1 52 407-458 19-70 (72)
14 1jkw_A Cyclin H; cell cycle, c 99.7 4.3E-16 1.5E-20 161.9 20.4 165 65-236 50-229 (323)
15 2f2c_A Cyclin homolog, V-cycli 99.7 2.7E-15 9.4E-20 150.5 21.1 180 73-261 54-245 (254)
16 1g3n_C V-cyclin; cyclin-depend 99.7 1.1E-15 3.9E-20 153.5 17.0 181 73-260 53-244 (257)
17 1w98_B Cyclin E, G1/S-specific 99.6 2.4E-14 8.4E-19 145.9 19.6 173 73-259 52-237 (283)
18 3g33_B CCND3 protein; Ser/Thr 99.6 7.5E-14 2.5E-18 144.0 19.7 185 72-263 72-266 (306)
19 1ais_B TFB TFIIB, protein (tra 99.3 5E-12 1.7E-16 121.9 11.4 92 74-167 108-199 (200)
20 1dl6_A Transcription factor II 99.1 3E-11 1E-15 94.1 3.9 44 2-45 12-55 (58)
21 1c9b_A General transcription f 99.1 3.7E-10 1.3E-14 109.4 11.7 91 74-166 102-192 (207)
22 1f5q_B Gamma herpesvirus cycli 99.0 3.1E-08 1.1E-12 99.3 19.7 177 73-260 51-238 (252)
23 1pft_A TFIIB, PFTFIIBN; N-term 98.9 8E-10 2.7E-14 83.4 4.3 43 3-45 7-49 (50)
24 3k1f_M Transcription initiatio 98.8 1.1E-09 3.7E-14 101.9 2.2 43 3-45 23-67 (197)
25 4bbr_M Transcription initiatio 98.6 8.4E-08 2.9E-12 100.3 10.1 89 172-262 126-214 (345)
26 3k7a_M Transcription initiatio 98.5 1.3E-08 4.3E-13 106.6 0.0 86 75-162 236-321 (345)
27 1zp2_A RNA polymerase II holoe 97.5 0.00043 1.5E-08 67.9 11.2 86 176-263 32-126 (235)
28 3h4c_A Transcription factor TF 97.1 0.0067 2.3E-07 57.8 13.1 88 74-164 15-105 (260)
29 2ivx_A Cyclin-T2; transcriptio 96.8 0.0047 1.6E-07 61.2 10.1 68 176-245 35-102 (257)
30 2i53_A Cyclin K; cell cycle, t 96.8 0.005 1.7E-07 60.9 10.1 68 176-245 45-112 (258)
31 2cch_B Cyclin A2, cyclin-A; co 96.7 0.0048 1.6E-07 61.4 9.2 88 74-163 139-228 (260)
32 2b9r_A Human cyclin B1; cell c 96.7 0.0028 9.7E-08 63.5 7.5 87 74-162 138-224 (269)
33 3rgf_B Cyclin-C; protein kinas 96.6 0.01 3.5E-07 59.9 10.8 67 176-244 47-114 (285)
34 1jkw_A Cyclin H; cell cycle, c 96.5 0.012 4E-07 60.7 11.2 71 177-247 62-132 (323)
35 2pk2_A Cyclin-T1, protein TAT; 96.4 0.0058 2E-07 63.9 7.9 68 176-245 42-109 (358)
36 2w96_A G1/S-specific cyclin-D1 96.2 0.027 9.4E-07 56.2 11.1 96 177-274 62-163 (271)
37 3m03_A ORC6, origin recognitio 96.0 0.04 1.4E-06 46.7 9.5 79 78-160 6-90 (95)
38 2f2c_A Cyclin homolog, V-cycli 95.8 0.032 1.1E-06 55.2 9.7 86 75-162 153-247 (254)
39 1g3n_C V-cyclin; cyclin-depend 95.6 0.053 1.8E-06 53.6 10.3 97 176-274 55-157 (257)
40 1w98_B Cyclin E, G1/S-specific 95.5 0.066 2.2E-06 53.9 10.9 97 176-274 54-157 (283)
41 4ell_A Retinoblastoma-associat 95.1 0.056 1.9E-06 57.3 8.9 73 72-145 280-354 (411)
42 1qxf_A GR2, 30S ribosomal prot 95.0 0.0086 2.9E-07 47.0 1.9 47 2-59 8-54 (66)
43 2r7g_A PP110, retinoblastoma-a 94.9 0.07 2.4E-06 55.4 8.9 75 70-145 214-290 (347)
44 3j20_W 30S ribosomal protein S 94.6 0.012 4.1E-07 45.9 1.8 45 2-57 16-60 (63)
45 2xzm_6 RPS27E; ribosome, trans 94.5 0.014 4.7E-07 47.7 1.8 31 2-32 33-63 (81)
46 4elj_A Retinoblastoma-associat 94.4 0.1 3.4E-06 58.4 9.1 74 71-145 524-599 (656)
47 3u5c_b RP61, YS20, 40S ribosom 94.1 0.017 5.9E-07 47.2 1.7 31 2-32 35-65 (82)
48 3g33_B CCND3 protein; Ser/Thr 94.1 0.17 5.8E-06 51.5 9.5 89 75-163 172-267 (306)
49 2qdj_A Retinoblastoma-associat 93.8 0.18 6E-06 51.5 8.8 73 77-152 5-82 (304)
50 3iz6_X 40S ribosomal protein S 93.6 0.02 6.9E-07 47.2 1.3 31 2-32 37-67 (86)
51 2pk7_A Uncharacterized protein 93.1 0.052 1.8E-06 43.3 2.9 29 2-31 9-37 (69)
52 1vq8_Z 50S ribosomal protein L 93.1 0.036 1.2E-06 45.8 2.0 32 3-35 29-60 (83)
53 2js4_A UPF0434 protein BB2007; 92.9 0.055 1.9E-06 43.3 2.7 28 2-30 9-36 (70)
54 2jr6_A UPF0434 protein NMA0874 92.8 0.052 1.8E-06 43.2 2.5 29 2-31 9-37 (68)
55 2jny_A Uncharacterized BCR; st 92.5 0.068 2.3E-06 42.4 2.7 28 2-30 11-38 (67)
56 2hf1_A Tetraacyldisaccharide-1 92.4 0.062 2.1E-06 42.7 2.4 29 2-31 9-37 (68)
57 3j20_Y 30S ribosomal protein S 91.9 0.086 3E-06 39.3 2.6 27 3-30 21-47 (50)
58 2k4x_A 30S ribosomal protein S 91.0 0.12 4.2E-06 39.3 2.6 28 1-29 18-45 (55)
59 3m03_A ORC6, origin recognitio 90.6 1.2 4E-05 37.6 8.5 77 179-259 6-88 (95)
60 4elj_A Retinoblastoma-associat 88.0 1.8 6.1E-05 48.4 10.1 74 77-152 7-84 (656)
61 3mn2_A Probable ARAC family tr 87.7 9.7 0.00033 31.6 12.5 100 118-274 4-105 (108)
62 3oou_A LIN2118 protein; protei 86.6 8.5 0.00029 32.0 11.6 100 117-274 6-106 (108)
63 2jt1_A PEFI protein; solution 86.5 0.44 1.5E-05 38.6 3.1 30 232-261 22-51 (77)
64 1tc3_C Protein (TC3 transposas 86.2 0.35 1.2E-05 33.9 2.2 28 234-261 21-48 (51)
65 2pmi_B PHO85 cyclin PHO80, ami 85.0 11 0.00038 38.0 13.2 105 74-186 77-185 (293)
66 3lsg_A Two-component response 84.2 16 0.00054 29.9 12.3 98 118-272 4-102 (103)
67 1qyp_A RNA polymerase II; tran 84.1 0.46 1.6E-05 36.1 2.0 31 2-32 16-55 (57)
68 3h0g_I DNA-directed RNA polyme 82.1 0.87 3E-05 39.5 3.3 31 1-31 4-37 (113)
69 2akl_A PHNA-like protein PA012 81.7 0.78 2.7E-05 40.7 2.8 27 3-31 29-55 (138)
70 1nui_A DNA primase/helicase; z 79.0 0.88 3E-05 44.6 2.5 26 3-29 16-42 (255)
71 2apo_B Ribosome biogenesis pro 78.6 0.59 2E-05 36.1 0.9 35 1-45 6-40 (60)
72 1k81_A EIF-2-beta, probable tr 78.5 0.75 2.6E-05 31.8 1.3 29 2-30 1-31 (36)
73 2x48_A CAG38821; archeal virus 78.3 0.7 2.4E-05 33.9 1.2 24 233-256 30-53 (55)
74 1twf_I B12.6, DNA-directed RNA 77.6 0.84 2.9E-05 40.2 1.7 31 1-31 4-37 (122)
75 3jyw_9 60S ribosomal protein L 77.5 1.2 4.2E-05 35.6 2.4 32 3-35 28-59 (72)
76 1f5q_B Gamma herpesvirus cycli 77.0 13 0.00044 36.4 10.3 97 176-274 53-155 (252)
77 3j21_i 50S ribosomal protein L 77.0 1.1 3.9E-05 36.7 2.2 32 3-35 37-68 (83)
78 2lnb_A Z-DNA-binding protein 1 76.5 2.9 9.9E-05 33.9 4.4 45 122-166 23-67 (80)
79 3iz5_m 60S ribosomal protein L 75.8 1.3 4.6E-05 37.0 2.3 32 3-35 38-69 (92)
80 2k5r_A Uncharacterized protein 75.6 1.2 4.2E-05 37.7 2.1 13 18-30 51-63 (97)
81 3izc_m 60S ribosomal protein R 75.5 1.3 4.5E-05 37.0 2.2 32 3-35 38-69 (92)
82 3i4p_A Transcriptional regulat 75.5 3 0.0001 37.9 4.9 36 228-263 11-46 (162)
83 2qdj_A Retinoblastoma-associat 75.4 13 0.00044 37.7 10.0 87 180-275 7-97 (304)
84 1ffk_W Ribosomal protein L37AE 75.0 1.1 3.8E-05 36.0 1.6 32 3-35 29-60 (73)
85 2r7g_A PP110, retinoblastoma-a 75.0 16 0.00054 37.7 10.7 127 116-243 105-287 (347)
86 3mkl_A HTH-type transcriptiona 75.0 23 0.00079 29.9 10.3 100 117-275 8-108 (120)
87 3qt1_I DNA-directed RNA polyme 74.9 1.5 5.3E-05 39.2 2.7 31 1-31 24-57 (133)
88 3h4c_A Transcription factor TF 74.7 7.9 0.00027 37.0 7.5 69 190-259 28-99 (260)
89 3oio_A Transcriptional regulat 73.7 25 0.00085 29.3 10.1 100 117-274 8-108 (113)
90 3cc2_Z 50S ribosomal protein L 73.7 1.2 4.1E-05 38.8 1.6 32 3-35 62-93 (116)
91 2z99_A Putative uncharacterize 73.4 6.3 0.00022 38.1 6.8 42 116-161 17-58 (219)
92 1twf_L ABC10-alpha, DNA-direct 73.2 0.96 3.3E-05 36.0 0.8 27 3-31 30-57 (70)
93 2kpi_A Uncharacterized protein 71.1 1.9 6.6E-05 32.7 2.0 25 3-30 12-38 (56)
94 1qbj_A Protein (double-strande 70.8 3.6 0.00012 33.5 3.7 29 232-260 25-53 (81)
95 1qgp_A Protein (double strande 70.7 3.7 0.00013 32.9 3.8 29 232-260 29-57 (77)
96 4a17_Y RPL37A, 60S ribosomal p 70.6 1.6 5.6E-05 37.1 1.7 32 3-35 38-69 (103)
97 3lsg_A Two-component response 70.3 13 0.00044 30.5 7.3 49 222-275 7-55 (103)
98 2e1c_A Putative HTH-type trans 69.5 4.3 0.00015 37.3 4.5 32 232-263 39-70 (171)
99 1t6s_A Conserved hypothetical 69.0 15 0.0005 33.8 7.9 99 117-247 10-121 (162)
100 3oou_A LIN2118 protein; protei 68.9 13 0.00043 30.9 7.0 50 219-274 7-56 (108)
101 1dxg_A Desulforedoxin; non-hem 68.9 1.9 6.4E-05 29.7 1.4 21 3-23 8-28 (36)
102 2cyy_A Putative HTH-type trans 68.8 4.7 0.00016 35.8 4.5 31 232-262 19-49 (151)
103 2cg4_A Regulatory protein ASNC 68.2 5 0.00017 35.7 4.6 31 231-261 19-49 (152)
104 3lwf_A LIN1550 protein, putati 68.0 5.8 0.0002 36.3 5.0 48 113-160 24-71 (159)
105 2pn6_A ST1022, 150AA long hypo 68.0 5.5 0.00019 35.2 4.8 33 231-263 14-46 (150)
106 2aus_D NOP10, ribosome biogene 67.5 1.5 5.1E-05 33.9 0.7 34 1-44 5-38 (60)
107 3pvv_A Chromosomal replication 67.2 12 0.00043 31.5 6.5 52 110-163 27-80 (101)
108 2dbb_A Putative HTH-type trans 67.2 5.3 0.00018 35.4 4.5 31 231-261 20-50 (151)
109 2k9s_A Arabinose operon regula 67.2 14 0.00047 30.6 6.9 51 219-274 5-55 (107)
110 2p5v_A Transcriptional regulat 67.0 5.3 0.00018 35.9 4.5 31 232-262 22-52 (162)
111 2p5k_A Arginine repressor; DNA 66.8 8.2 0.00028 28.7 4.9 28 232-259 17-49 (64)
112 1uxc_A FRUR (1-57), fructose r 66.8 4 0.00014 31.6 3.1 22 235-256 1-22 (65)
113 2jpc_A SSRB; DNA binding prote 66.8 4.1 0.00014 30.2 3.1 28 233-260 12-39 (61)
114 2cfx_A HTH-type transcriptiona 66.7 5.5 0.00019 35.1 4.5 31 232-262 17-47 (144)
115 1i1g_A Transcriptional regulat 66.2 5.9 0.0002 34.5 4.5 32 231-262 15-46 (141)
116 1tfi_A Transcriptional elongat 66.0 2.4 8.3E-05 31.4 1.6 28 2-29 10-46 (50)
117 3gbg_A TCP pilus virulence reg 66.0 54 0.0018 31.4 12.0 101 115-274 168-269 (276)
118 2ia0_A Putative HTH-type trans 65.5 5.8 0.0002 36.4 4.5 31 232-262 29-59 (171)
119 2htj_A P fimbrial regulatory p 65.5 7.1 0.00024 30.9 4.5 29 233-261 13-41 (81)
120 1gh9_A 8.3 kDa protein (gene M 65.4 2 6.9E-05 34.2 1.1 27 2-31 5-31 (71)
121 3e6c_C CPRK, cyclic nucleotide 64.6 18 0.0006 34.2 8.0 29 233-261 176-204 (250)
122 1jko_C HIN recombinase, DNA-in 64.3 1.1 3.7E-05 31.7 -0.6 25 235-259 22-46 (52)
123 1je8_A Nitrate/nitrite respons 63.6 7.1 0.00024 31.2 4.2 30 233-262 35-64 (82)
124 2heo_A Z-DNA binding protein 1 63.5 6.9 0.00024 30.2 3.9 31 231-261 22-52 (67)
125 1fse_A GERE; helix-turn-helix 63.5 7.4 0.00025 29.6 4.2 28 233-260 25-52 (74)
126 1xn7_A Hypothetical protein YH 63.4 5.6 0.00019 32.1 3.4 29 232-260 14-42 (78)
127 2w25_A Probable transcriptiona 62.8 7.3 0.00025 34.5 4.5 31 232-262 19-49 (150)
128 3o9x_A Uncharacterized HTH-typ 62.2 2.8 9.6E-05 36.5 1.6 29 2-30 3-46 (133)
129 3mn2_A Probable ARAC family tr 62.1 21 0.00072 29.4 7.1 50 219-274 4-53 (108)
130 6rxn_A Rubredoxin; electron tr 62.1 2.7 9.2E-05 30.7 1.2 23 3-28 6-38 (46)
131 3j21_g 50S ribosomal protein L 62.0 2.5 8.5E-05 31.6 1.0 22 3-29 16-37 (51)
132 2p7v_B Sigma-70, RNA polymeras 61.9 6.6 0.00022 29.9 3.5 29 233-261 24-52 (68)
133 2w48_A Sorbitol operon regulat 61.7 7.2 0.00025 39.2 4.8 35 227-261 14-48 (315)
134 3t8r_A Staphylococcus aureus C 61.7 7.3 0.00025 34.7 4.3 46 115-160 10-55 (143)
135 1oyi_A Double-stranded RNA-bin 60.8 6 0.00021 32.4 3.2 26 235-260 31-56 (82)
136 1l9z_H Sigma factor SIGA; heli 60.4 1.7E+02 0.006 30.8 17.2 25 233-257 394-418 (438)
137 1x3u_A Transcriptional regulat 60.4 8.8 0.0003 29.7 4.1 42 233-275 30-71 (79)
138 2o8x_A Probable RNA polymerase 59.3 11 0.00036 28.4 4.3 27 233-259 30-56 (70)
139 2y75_A HTH-type transcriptiona 58.8 12 0.0004 32.3 5.0 43 117-159 10-52 (129)
140 1wii_A Hypothetical UPF0222 pr 58.8 3.6 0.00012 34.0 1.5 30 3-32 25-59 (85)
141 3b02_A Transcriptional regulat 58.5 15 0.00052 33.2 6.1 29 233-261 138-166 (195)
142 2k9s_A Arabinose operon regula 58.3 16 0.00056 30.1 5.7 99 118-273 5-104 (107)
143 3la7_A Global nitrogen regulat 58.2 19 0.00065 33.9 6.9 31 232-262 191-221 (243)
144 3hug_A RNA polymerase sigma fa 57.6 11 0.00037 30.6 4.3 27 233-259 52-78 (92)
145 1jhg_A Trp operon repressor; c 57.4 7.4 0.00025 33.1 3.3 27 233-259 57-83 (101)
146 1j5y_A Transcriptional regulat 57.3 11 0.00038 34.9 4.9 30 231-260 33-62 (187)
147 3dv8_A Transcriptional regulat 57.1 17 0.00058 33.3 6.2 30 233-262 168-197 (220)
148 2d1h_A ST1889, 109AA long hypo 57.0 9.4 0.00032 31.0 3.9 30 232-261 34-63 (109)
149 1q1h_A TFE, transcription fact 56.6 11 0.00038 31.4 4.3 30 231-260 30-59 (110)
150 1ylf_A RRF2 family protein; st 55.9 10 0.00034 33.9 4.2 45 114-159 12-56 (149)
151 1ku3_A Sigma factor SIGA; heli 55.9 13 0.00043 28.7 4.3 27 233-259 29-55 (73)
152 2k02_A Ferrous iron transport 55.5 7.6 0.00026 32.1 3.0 31 232-262 14-44 (87)
153 2ct7_A Ring finger protein 31; 55.5 5.8 0.0002 32.4 2.3 27 3-30 27-53 (86)
154 4rxn_A Rubredoxin; electron tr 55.3 5 0.00017 30.3 1.7 10 22-31 5-14 (54)
155 1tty_A Sigma-A, RNA polymerase 55.3 9 0.00031 30.8 3.4 29 233-261 37-65 (87)
156 3r0a_A Putative transcriptiona 55.2 13 0.00043 32.1 4.6 39 223-261 30-69 (123)
157 2fmy_A COOA, carbon monoxide o 55.0 20 0.00067 33.0 6.3 29 233-261 166-194 (220)
158 3c57_A Two component transcrip 54.9 9.1 0.00031 31.4 3.4 27 233-259 41-67 (95)
159 3oio_A Transcriptional regulat 54.8 28 0.00097 28.9 6.7 50 219-274 9-58 (113)
160 1e8j_A Rubredoxin; iron-sulfur 54.6 5 0.00017 30.0 1.6 11 21-31 4-14 (52)
161 2gau_A Transcriptional regulat 54.3 23 0.00079 32.7 6.7 30 232-261 178-207 (232)
162 3v2d_5 50S ribosomal protein L 54.2 3.6 0.00012 31.7 0.7 22 2-29 31-52 (60)
163 3cuo_A Uncharacterized HTH-typ 53.9 12 0.00041 30.0 4.0 31 231-261 35-65 (99)
164 1gnf_A Transcription factor GA 53.8 4.9 0.00017 29.3 1.4 28 3-30 6-35 (46)
165 3ulq_B Transcriptional regulat 53.6 9.9 0.00034 31.1 3.4 28 233-260 43-70 (90)
166 3b73_A PHIH1 repressor-like pr 53.0 12 0.00041 32.2 4.0 32 230-262 24-57 (111)
167 2x4h_A Hypothetical protein SS 53.0 25 0.00084 30.2 6.2 31 231-261 28-58 (139)
168 2rnj_A Response regulator prot 53.0 8.9 0.00031 31.0 3.1 29 233-261 43-71 (91)
169 2jt1_A PEFI protein; solution 53.0 18 0.00062 28.9 4.8 33 131-163 22-54 (77)
170 2w7n_A TRFB transcriptional re 52.9 17 0.00058 30.8 4.8 35 226-260 26-60 (101)
171 2nnn_A Probable transcriptiona 52.8 33 0.0011 28.9 6.9 30 231-261 50-79 (140)
172 3k2z_A LEXA repressor; winged 52.7 14 0.00048 34.4 4.8 33 229-261 19-51 (196)
173 3fx3_A Cyclic nucleotide-bindi 52.7 26 0.00088 32.5 6.7 31 232-262 176-206 (237)
174 1j1v_A Chromosomal replication 52.4 25 0.00085 29.1 5.8 52 110-163 23-77 (94)
175 1zx4_A P1 PARB, plasmid partit 52.3 12 0.00041 35.4 4.2 27 232-258 22-48 (192)
176 3jth_A Transcription activator 52.0 14 0.00047 30.0 4.1 29 233-261 35-63 (98)
177 1vk6_A NADH pyrophosphatase; 1 52.0 7.5 0.00026 38.6 2.9 32 1-33 107-138 (269)
178 3u50_C Telomerase-associated p 52.0 7 0.00024 36.4 2.5 25 3-29 44-68 (172)
179 2pmi_B PHO85 cyclin PHO80, ami 51.9 92 0.0031 31.3 10.8 102 173-276 75-182 (293)
180 3ryp_A Catabolite gene activat 51.3 17 0.00057 33.0 5.0 29 233-261 166-194 (210)
181 3cng_A Nudix hydrolase; struct 51.3 8.2 0.00028 35.5 2.9 28 1-28 3-33 (189)
182 2l8n_A Transcriptional repress 51.2 6.1 0.00021 30.8 1.6 23 234-256 9-31 (67)
183 3ga8_A HTH-type transcriptiona 50.9 5.9 0.0002 31.7 1.6 11 2-12 3-13 (78)
184 1twf_I B12.6, DNA-directed RNA 50.7 12 0.0004 32.8 3.6 33 2-34 73-114 (122)
185 2pg4_A Uncharacterized protein 50.7 22 0.00076 28.6 5.2 32 230-261 26-58 (95)
186 3lwf_A LIN1550 protein, putati 50.5 17 0.00058 33.1 4.8 40 222-261 32-71 (159)
187 2oz6_A Virulence factor regula 50.3 18 0.0006 32.8 5.0 29 233-261 163-191 (207)
188 3la7_A Global nitrogen regulat 49.9 35 0.0012 32.1 7.2 50 131-180 191-240 (243)
189 2g2k_A EIF-5, eukaryotic trans 49.9 6.7 0.00023 36.5 2.0 29 2-30 97-129 (170)
190 1bl0_A Protein (multiple antib 49.3 32 0.0011 29.4 6.3 52 217-274 11-62 (129)
191 2l0k_A Stage III sporulation p 48.9 7.9 0.00027 32.3 2.1 23 235-257 21-43 (93)
192 2y75_A HTH-type transcriptiona 48.6 20 0.00068 30.8 4.8 37 225-261 17-53 (129)
193 2heo_A Z-DNA binding protein 1 48.5 25 0.00086 26.9 4.9 33 128-160 20-52 (67)
194 2zcw_A TTHA1359, transcription 48.5 19 0.00067 32.6 5.0 30 233-262 145-174 (202)
195 3d0s_A Transcriptional regulat 48.4 28 0.00095 32.0 6.2 29 233-261 176-204 (227)
196 1zyb_A Transcription regulator 48.4 23 0.00078 33.0 5.6 29 233-261 185-213 (232)
197 3pqk_A Biofilm growth-associat 48.4 15 0.00051 30.1 3.8 29 233-261 35-63 (102)
198 1sfx_A Conserved hypothetical 47.5 15 0.00053 29.5 3.7 29 233-261 33-61 (109)
199 3e6c_C CPRK, cyclic nucleotide 47.3 55 0.0019 30.6 8.2 48 113-160 147-204 (250)
200 4esj_A Type-2 restriction enzy 47.3 7.7 0.00026 37.9 2.0 29 2-30 35-66 (257)
201 3kcc_A Catabolite gene activat 47.2 23 0.00079 33.8 5.5 29 233-261 216-244 (260)
202 3e97_A Transcriptional regulat 47.0 23 0.0008 32.7 5.4 30 232-261 173-202 (231)
203 4ham_A LMO2241 protein; struct 46.7 12 0.00041 32.7 3.1 30 231-260 34-64 (134)
204 2b0l_A GTP-sensing transcripti 46.7 14 0.00047 31.1 3.3 30 232-261 40-70 (102)
205 3dkw_A DNR protein; CRP-FNR, H 46.6 20 0.00069 32.9 4.9 30 232-261 176-205 (227)
206 2vut_I AREA, nitrogen regulato 46.1 6.1 0.00021 28.3 0.8 27 3-29 3-31 (43)
207 2hr3_A Probable transcriptiona 45.8 67 0.0023 27.2 7.9 30 232-261 48-77 (147)
208 3t8r_A Staphylococcus aureus C 45.7 15 0.00052 32.6 3.6 40 222-261 16-55 (143)
209 1ylf_A RRF2 family protein; st 45.0 18 0.0006 32.2 4.0 39 222-261 19-57 (149)
210 2hzt_A Putative HTH-type trans 44.9 26 0.00087 29.1 4.8 30 232-261 25-55 (107)
211 1y0u_A Arsenical resistance op 44.9 21 0.00073 28.8 4.2 29 233-261 42-70 (96)
212 2kae_A GATA-type transcription 44.7 6.5 0.00022 31.3 0.9 26 3-29 10-39 (71)
213 3k69_A Putative transcription 44.0 19 0.00066 32.7 4.1 44 116-160 12-55 (162)
214 1u8b_A ADA polyprotein; protei 43.8 26 0.00089 30.1 4.8 38 232-274 91-128 (133)
215 2zjr_Z 50S ribosomal protein L 43.8 8.6 0.00029 29.6 1.4 24 2-31 31-54 (60)
216 1p4w_A RCSB; solution structur 43.5 17 0.00059 30.3 3.4 27 234-260 49-75 (99)
217 2qwt_A Transcriptional regulat 43.3 26 0.00088 31.4 4.9 37 219-256 18-54 (196)
218 3df8_A Possible HXLR family tr 43.2 26 0.0009 29.4 4.6 27 235-261 43-70 (111)
219 2fiy_A Protein FDHE homolog; F 42.8 10 0.00035 38.6 2.2 30 2-31 183-219 (309)
220 3neu_A LIN1836 protein; struct 42.7 19 0.00065 31.1 3.7 29 232-260 34-63 (125)
221 3iwz_A CAP-like, catabolite ac 42.7 26 0.0009 32.1 5.0 29 233-261 186-214 (230)
222 3tgn_A ADC operon repressor AD 42.6 30 0.001 29.6 5.0 27 235-261 52-78 (146)
223 3tqn_A Transcriptional regulat 42.5 16 0.00053 31.0 3.1 29 232-260 30-59 (113)
224 3mkl_A HTH-type transcriptiona 42.3 25 0.00086 29.6 4.4 52 217-275 7-58 (120)
225 1uly_A Hypothetical protein PH 42.0 24 0.00083 32.9 4.6 29 233-261 32-60 (192)
226 4e2x_A TCAB9; kijanose, tetron 42.0 8.4 0.00029 39.9 1.5 22 21-42 54-75 (416)
227 3nrv_A Putative transcriptiona 41.9 54 0.0019 27.9 6.7 31 230-261 51-81 (148)
228 3dfx_A Trans-acting T-cell-spe 41.6 6.8 0.00023 30.4 0.5 29 3-31 9-39 (63)
229 2a6h_F RNA polymerase sigma fa 41.5 1.5E+02 0.0052 31.0 11.2 25 233-257 379-403 (423)
230 3bro_A Transcriptional regulat 41.5 31 0.0011 29.2 4.9 29 233-261 49-77 (141)
231 2jpc_A SSRB; DNA binding prote 41.2 27 0.00092 25.5 3.9 32 133-164 13-44 (61)
232 4gat_A Nitrogen regulatory pro 41.1 7.2 0.00025 30.6 0.6 29 3-31 11-41 (66)
233 1ovx_A ATP-dependent CLP prote 41.1 8.9 0.0003 30.2 1.1 28 1-28 18-48 (67)
234 3t72_q RNA polymerase sigma fa 41.1 20 0.00067 30.1 3.4 25 233-257 38-62 (99)
235 1on2_A Transcriptional regulat 41.0 29 0.001 29.9 4.7 28 233-260 21-48 (142)
236 3by6_A Predicted transcription 40.8 17 0.00058 31.5 3.1 29 232-260 32-61 (126)
237 3b02_A Transcriptional regulat 40.6 46 0.0016 29.8 6.2 29 132-160 138-166 (195)
238 1v4r_A Transcriptional repress 40.6 7.9 0.00027 32.0 0.8 29 233-261 33-62 (102)
239 1s7o_A Hypothetical UPF0122 pr 40.6 20 0.00068 30.6 3.4 27 233-259 37-63 (113)
240 2kko_A Possible transcriptiona 40.5 27 0.00093 29.1 4.3 29 233-261 37-65 (108)
241 4ich_A Transcriptional regulat 40.4 21 0.00071 35.1 4.1 37 219-256 125-162 (311)
242 3h5t_A Transcriptional regulat 40.3 15 0.0005 37.0 3.0 26 232-257 7-32 (366)
243 2ek5_A Predicted transcription 40.3 23 0.00079 30.9 3.9 30 232-261 25-55 (129)
244 1xsv_A Hypothetical UPF0122 pr 40.2 27 0.00094 29.6 4.3 27 233-259 40-66 (113)
245 2fiy_A Protein FDHE homolog; F 40.1 15 0.00051 37.3 2.9 12 20-31 253-264 (309)
246 3dv8_A Transcriptional regulat 39.9 55 0.0019 29.6 6.7 47 114-160 147-196 (220)
247 1ft9_A Carbon monoxide oxidati 39.8 22 0.00076 32.7 4.0 29 233-261 162-190 (222)
248 2elh_A CG11849-PA, LD40883P; s 39.7 17 0.00059 29.2 2.7 25 235-259 39-63 (87)
249 2fmy_A COOA, carbon monoxide o 39.4 60 0.002 29.6 6.9 29 132-160 166-194 (220)
250 2jn6_A Protein CGL2762, transp 39.1 36 0.0012 27.5 4.7 28 234-261 23-50 (97)
251 1xd7_A YWNA; structural genomi 39.1 28 0.00097 30.7 4.4 45 113-160 6-50 (145)
252 1k78_A Paired box protein PAX5 39.0 80 0.0028 27.3 7.4 27 134-160 49-75 (149)
253 2lfw_A PHYR sigma-like domain; 39.0 18 0.0006 32.1 3.0 27 233-259 108-134 (157)
254 3bvo_A CO-chaperone protein HS 39.0 13 0.00045 35.4 2.2 27 3-31 12-38 (207)
255 2kn9_A Rubredoxin; metalloprot 38.9 10 0.00034 31.0 1.2 15 19-33 26-40 (81)
256 1ub9_A Hypothetical protein PH 38.9 17 0.00058 29.1 2.6 29 233-261 29-57 (100)
257 1u8b_A ADA polyprotein; protei 38.8 22 0.00076 30.6 3.6 38 131-181 91-128 (133)
258 3mzy_A RNA polymerase sigma-H 38.8 22 0.00074 30.8 3.5 27 233-259 123-149 (164)
259 2zcm_A Biofilm operon icaabcd 38.5 39 0.0013 29.8 5.3 43 213-256 6-49 (192)
260 2bgc_A PRFA; bacterial infecti 38.1 42 0.0015 31.2 5.7 30 232-261 166-197 (238)
261 1r1u_A CZRA, repressor protein 38.0 28 0.00095 28.7 3.9 29 233-261 38-66 (106)
262 2hsg_A Glucose-resistance amyl 38.0 16 0.00053 36.1 2.7 24 234-257 2-25 (332)
263 3p2a_A Thioredoxin 2, putative 37.9 10 0.00034 32.9 1.1 34 1-34 5-39 (148)
264 2f2e_A PA1607; transcription f 37.7 34 0.0012 30.2 4.7 29 233-261 36-64 (146)
265 1pdn_C Protein (PRD paired); p 37.6 27 0.00092 28.9 3.8 28 234-261 33-60 (128)
266 1vzi_A Desulfoferrodoxin; ferr 37.5 11 0.00039 33.1 1.4 27 3-31 9-35 (126)
267 2gau_A Transcriptional regulat 37.5 75 0.0026 29.1 7.3 29 132-160 179-207 (232)
268 2fu4_A Ferric uptake regulatio 37.2 35 0.0012 26.7 4.2 29 233-261 32-65 (83)
269 1bl0_A Protein (multiple antib 37.1 46 0.0016 28.4 5.3 102 116-275 11-113 (129)
270 1neq_A DNA-binding protein NER 37.1 28 0.00095 27.3 3.5 24 232-255 20-43 (74)
271 1ug2_A 2610100B20RIK gene prod 36.7 61 0.0021 27.0 5.5 41 122-162 43-85 (95)
272 2p7v_B Sigma-70, RNA polymeras 36.7 35 0.0012 25.6 4.0 33 132-164 24-56 (68)
273 2jsc_A Transcriptional regulat 36.6 32 0.0011 29.1 4.1 28 234-261 34-61 (118)
274 3mky_B Protein SOPB; partition 36.6 33 0.0011 32.3 4.5 35 225-259 33-67 (189)
275 4a5n_A Uncharacterized HTH-typ 36.5 41 0.0014 29.5 4.9 30 232-261 37-67 (131)
276 4a0z_A Transcription factor FA 36.4 38 0.0013 31.7 4.9 31 232-262 24-54 (190)
277 3bpv_A Transcriptional regulat 36.4 1E+02 0.0036 25.6 7.5 30 232-261 41-70 (138)
278 1dx8_A Rubredoxin; electron tr 36.2 12 0.00042 29.5 1.3 11 21-31 8-18 (70)
279 1qpz_A PURA, protein (purine n 36.0 20 0.00068 35.5 3.1 22 235-256 1-22 (340)
280 3frw_A Putative Trp repressor 35.9 46 0.0016 28.5 4.8 31 230-260 54-84 (107)
281 2ds5_A CLPX, ATP-dependent CLP 35.8 11 0.00037 28.0 0.8 26 1-26 11-39 (51)
282 4ev0_A Transcription regulator 35.6 32 0.0011 31.2 4.3 30 233-262 162-191 (216)
283 2xi8_A Putative transcription 35.5 24 0.00082 25.6 2.8 39 233-276 13-51 (66)
284 1z4h_A TORI, TOR inhibition pr 35.4 25 0.00085 26.8 2.9 23 235-257 11-33 (66)
285 1d0q_A DNA primase; zinc-bindi 35.4 16 0.00055 30.7 2.0 26 3-28 39-66 (103)
286 2a61_A Transcriptional regulat 35.4 42 0.0014 28.5 4.8 29 233-261 46-74 (145)
287 3ulq_B Transcriptional regulat 35.3 37 0.0012 27.6 4.1 31 134-164 45-75 (90)
288 2lkp_A Transcriptional regulat 35.2 45 0.0015 27.8 4.9 28 233-260 44-71 (119)
289 4ell_A Retinoblastoma-associat 35.2 74 0.0025 33.5 7.4 62 181-243 288-351 (411)
290 2zkz_A Transcriptional repress 34.6 23 0.0008 29.0 2.8 29 233-261 40-68 (99)
291 2oqg_A Possible transcriptiona 34.5 28 0.00094 28.7 3.3 28 233-260 33-60 (114)
292 1l1o_C Replication protein A 7 34.5 17 0.0006 33.7 2.2 27 3-31 45-73 (181)
293 1j9i_A GPNU1 DBD;, terminase s 34.5 17 0.00058 27.8 1.8 23 235-257 3-25 (68)
294 3fm5_A Transcriptional regulat 34.3 95 0.0032 26.5 7.0 31 231-261 51-81 (150)
295 2a6c_A Helix-turn-helix motif; 34.2 73 0.0025 24.8 5.7 44 229-276 26-69 (83)
296 2kdx_A HYPA, hydrogenase/ureas 34.1 13 0.00044 32.1 1.2 8 22-29 92-99 (119)
297 1fse_A GERE; helix-turn-helix 33.8 59 0.002 24.3 4.9 32 133-164 26-57 (74)
298 2oz6_A Virulence factor regula 33.7 49 0.0017 29.7 5.2 29 132-160 163-191 (207)
299 3kor_A Possible Trp repressor; 33.7 28 0.00097 30.3 3.3 36 233-274 74-109 (119)
300 2q24_A Putative TETR family tr 33.7 35 0.0012 30.2 4.2 38 218-256 19-56 (194)
301 3f6o_A Probable transcriptiona 33.5 29 0.001 29.3 3.4 29 233-261 30-58 (118)
302 1ku9_A Hypothetical protein MJ 33.4 83 0.0028 26.5 6.4 30 232-261 39-68 (152)
303 1rzs_A Antirepressor, regulato 33.4 24 0.00083 26.4 2.5 21 235-255 11-31 (61)
304 2kao_A Methionine-R-sulfoxide 33.4 21 0.00072 31.4 2.4 30 1-30 1-30 (124)
305 1bia_A BIRA bifunctional prote 33.3 36 0.0012 34.3 4.6 31 231-261 16-46 (321)
306 3kjx_A Transcriptional regulat 33.2 18 0.00061 35.9 2.3 25 233-257 9-33 (344)
307 3bro_A Transcriptional regulat 33.1 1.4E+02 0.0048 24.8 7.9 39 122-160 39-77 (141)
308 3deu_A Transcriptional regulat 33.0 98 0.0034 27.3 7.1 31 231-261 65-95 (166)
309 3kz3_A Repressor protein CI; f 32.9 63 0.0022 24.8 5.0 21 132-152 24-44 (80)
310 1r69_A Repressor protein CI; g 32.7 28 0.00096 25.6 2.8 26 232-257 12-37 (69)
311 2hku_A A putative transcriptio 32.7 53 0.0018 29.6 5.3 41 215-256 21-61 (215)
312 2qvo_A Uncharacterized protein 32.7 44 0.0015 26.9 4.2 30 232-261 28-57 (95)
313 1l3l_A Transcriptional activat 32.6 35 0.0012 32.3 4.2 28 233-260 187-214 (234)
314 2zkr_2 60S ribosomal protein L 32.6 18 0.00061 30.4 1.7 22 3-28 18-39 (97)
315 1ntc_A Protein (nitrogen regul 32.6 35 0.0012 27.7 3.6 29 229-259 61-89 (91)
316 2rdp_A Putative transcriptiona 32.5 1.1E+02 0.0038 25.9 7.2 28 234-261 56-83 (150)
317 1u2w_A CADC repressor, cadmium 32.5 35 0.0012 29.1 3.7 30 232-261 54-83 (122)
318 2nnn_A Probable transcriptiona 32.2 1.7E+02 0.0059 24.2 8.3 28 133-160 52-79 (140)
319 1u78_A TC3 transposase, transp 31.9 38 0.0013 28.7 3.9 28 234-261 22-49 (141)
320 1zug_A Phage 434 CRO protein; 31.9 29 0.001 25.6 2.8 25 232-256 14-38 (71)
321 3omt_A Uncharacterized protein 31.8 28 0.00095 26.3 2.7 39 233-276 20-58 (73)
322 2nyx_A Probable transcriptiona 31.8 56 0.0019 28.9 5.1 28 234-261 59-86 (168)
323 3kz3_A Repressor protein CI; f 31.7 23 0.00079 27.4 2.2 40 232-276 23-62 (80)
324 1r1t_A Transcriptional repress 31.7 56 0.0019 27.9 4.9 28 233-260 58-85 (122)
325 2r1j_L Repressor protein C2; p 31.7 29 0.00099 25.3 2.7 38 233-275 17-54 (68)
326 3ech_A MEXR, multidrug resista 31.7 71 0.0024 27.1 5.7 28 234-261 51-78 (142)
327 3ryp_A Catabolite gene activat 31.6 56 0.0019 29.3 5.3 29 132-160 166-194 (210)
328 3fx3_A Cyclic nucleotide-bindi 31.4 62 0.0021 29.8 5.6 32 131-163 176-207 (237)
329 2zcw_A TTHA1359, transcription 31.4 57 0.0019 29.4 5.2 29 132-160 145-173 (202)
330 1ku3_A Sigma factor SIGA; heli 31.1 53 0.0018 25.0 4.3 31 132-162 29-59 (73)
331 2b5a_A C.BCLI; helix-turn-heli 31.1 30 0.001 26.1 2.8 40 232-276 21-60 (77)
332 3g3z_A NMB1585, transcriptiona 31.1 1.2E+02 0.0041 25.6 7.1 28 234-261 45-72 (145)
333 3eco_A MEPR; mutlidrug efflux 31.0 44 0.0015 28.2 4.2 29 233-261 46-74 (139)
334 3b7h_A Prophage LP1 protein 11 31.0 30 0.001 26.1 2.8 41 232-276 18-58 (78)
335 2fbh_A Transcriptional regulat 30.9 1.5E+02 0.0052 24.7 7.7 30 231-260 49-78 (146)
336 2gxg_A 146AA long hypothetical 30.9 1.6E+02 0.0054 24.7 7.8 30 232-261 48-77 (146)
337 2kpj_A SOS-response transcript 30.9 43 0.0015 26.7 3.8 43 229-276 17-59 (94)
338 3h0g_L DNA-directed RNA polyme 30.8 22 0.00075 27.6 1.8 24 3-28 23-46 (63)
339 2r0q_C Putative transposon TN5 30.7 1.6E+02 0.0056 27.1 8.5 26 233-258 174-199 (209)
340 1or7_A Sigma-24, RNA polymeras 30.7 40 0.0014 30.2 4.0 27 233-259 155-181 (194)
341 1x3u_A Transcriptional regulat 30.6 67 0.0023 24.4 4.8 32 133-164 31-62 (79)
342 1tty_A Sigma-A, RNA polymerase 30.4 52 0.0018 26.1 4.3 32 132-163 37-68 (87)
343 2eth_A Transcriptional regulat 30.4 49 0.0017 28.6 4.5 28 234-261 58-85 (154)
344 3dkw_A DNR protein; CRP-FNR, H 30.3 74 0.0025 28.9 5.9 31 131-161 176-206 (227)
345 3vp5_A Transcriptional regulat 30.2 48 0.0016 29.5 4.5 39 217-256 15-54 (189)
346 1zyb_A Transcription regulator 30.1 71 0.0024 29.5 5.8 29 132-160 185-213 (232)
347 1j1v_A Chromosomal replication 30.1 2E+02 0.0067 23.5 7.8 47 212-260 23-73 (94)
348 1z7u_A Hypothetical protein EF 29.9 42 0.0014 28.0 3.7 28 233-260 34-62 (112)
349 3qkx_A Uncharacterized HTH-typ 29.9 50 0.0017 28.6 4.4 37 219-256 13-50 (188)
350 3ivp_A Putative transposon-rel 29.9 2.1E+02 0.0071 23.8 8.3 74 133-207 25-111 (126)
351 3nxc_A HTH-type protein SLMA; 29.7 47 0.0016 29.5 4.3 41 215-255 25-66 (212)
352 3bdd_A Regulatory protein MARR 29.7 42 0.0014 28.3 3.8 29 233-261 44-72 (142)
353 1je8_A Nitrate/nitrite respons 29.6 70 0.0024 25.1 4.8 32 133-164 36-67 (82)
354 2k9q_A Uncharacterized protein 29.5 32 0.0011 26.3 2.7 38 233-275 14-51 (77)
355 3bqz_B HTH-type transcriptiona 29.4 58 0.002 28.4 4.8 37 219-256 7-44 (194)
356 1k78_A Paired box protein PAX5 29.4 43 0.0015 29.1 3.8 28 234-261 48-75 (149)
357 2fa5_A Transcriptional regulat 29.4 56 0.0019 28.4 4.6 30 232-261 61-90 (162)
358 1tbx_A ORF F-93, hypothetical 29.3 52 0.0018 26.4 4.1 30 232-261 20-53 (99)
359 1y7y_A C.AHDI; helix-turn-heli 29.3 34 0.0012 25.5 2.8 40 232-276 24-63 (74)
360 3r0a_A Putative transcriptiona 29.2 69 0.0024 27.2 5.1 38 123-160 31-69 (123)
361 1o5l_A Transcriptional regulat 29.2 18 0.00062 33.3 1.4 31 232-262 162-192 (213)
362 3e7l_A Transcriptional regulat 29.1 60 0.0021 24.3 4.1 25 236-260 34-58 (63)
363 3q87_A Putative uncharacterize 29.0 12 0.00041 33.0 0.1 17 15-31 94-110 (125)
364 3fmy_A HTH-type transcriptiona 29.0 25 0.00087 26.9 2.0 24 233-256 23-46 (73)
365 3knw_A Putative transcriptiona 28.8 55 0.0019 29.1 4.6 39 217-256 17-56 (212)
366 2o20_A Catabolite control prot 28.7 12 0.00041 37.0 0.0 26 233-258 4-29 (332)
367 4ffb_C Protein STU2; tubulin f 28.7 3.8E+02 0.013 25.3 11.5 140 64-207 65-212 (278)
368 2q0o_A Probable transcriptiona 28.6 36 0.0012 32.2 3.5 28 233-260 189-216 (236)
369 3d0s_A Transcriptional regulat 28.6 1.1E+02 0.0037 27.9 6.8 29 132-160 176-204 (227)
370 3col_A Putative transcription 28.5 45 0.0015 29.1 3.9 39 217-256 13-52 (196)
371 2fq4_A Transcriptional regulat 28.4 58 0.002 28.8 4.7 37 219-256 17-54 (192)
372 1yyv_A Putative transcriptiona 28.2 46 0.0016 28.9 3.8 29 233-261 47-76 (131)
373 3cjn_A Transcriptional regulat 28.2 44 0.0015 29.1 3.8 30 232-261 64-93 (162)
374 1adr_A P22 C2 repressor; trans 28.2 35 0.0012 25.5 2.7 38 233-275 17-54 (76)
375 3ppb_A Putative TETR family tr 28.1 57 0.0019 28.4 4.5 39 217-256 12-51 (195)
376 1jgs_A Multiple antibiotic res 28.0 1.6E+02 0.0054 24.4 7.3 29 233-261 47-75 (138)
377 3kkc_A TETR family transcripti 27.9 36 0.0012 29.4 3.1 36 219-255 17-53 (177)
378 4fx0_A Probable transcriptiona 27.8 79 0.0027 27.5 5.4 29 233-261 51-79 (148)
379 2jrp_A Putative cytoplasmic pr 27.7 34 0.0012 27.8 2.6 26 3-31 4-29 (81)
380 2pex_A Transcriptional regulat 27.7 1.4E+02 0.0049 25.3 7.1 30 232-261 59-88 (153)
381 3lwj_A Putative TETR-family tr 27.5 61 0.0021 28.6 4.6 37 219-256 17-54 (202)
382 2l8n_A Transcriptional repress 27.5 27 0.00093 27.0 1.9 22 132-153 8-29 (67)
383 3bs3_A Putative DNA-binding pr 27.4 38 0.0013 25.4 2.8 39 233-276 22-60 (76)
384 3rd3_A Probable transcriptiona 27.4 63 0.0021 28.2 4.7 39 216-255 12-51 (197)
385 3bj6_A Transcriptional regulat 27.4 1.2E+02 0.004 25.8 6.4 29 233-261 53-81 (152)
386 3lfp_A CSP231I C protein; tran 27.4 2.2E+02 0.0075 22.5 7.7 33 133-165 14-61 (98)
387 3qq6_A HTH-type transcriptiona 27.4 37 0.0013 26.3 2.7 40 233-276 22-61 (78)
388 2jmo_A Parkin; IBR, E3 ligase, 27.3 33 0.0011 27.4 2.4 29 1-30 25-60 (80)
389 3c57_A Two component transcrip 27.2 59 0.002 26.4 4.1 31 134-164 43-73 (95)
390 2qtq_A Transcriptional regulat 27.2 77 0.0026 28.0 5.3 39 217-256 19-58 (213)
391 2fsw_A PG_0823 protein; alpha- 27.1 58 0.002 26.8 4.1 30 232-261 36-66 (107)
392 1qgp_A Protein (double strande 27.1 91 0.0031 24.5 5.0 31 131-161 29-59 (77)
393 3cdh_A Transcriptional regulat 27.0 62 0.0021 27.9 4.5 30 232-261 55-84 (155)
394 1z91_A Organic hydroperoxide r 27.0 73 0.0025 27.0 4.9 28 234-261 54-81 (147)
395 3t76_A VANU, transcriptional r 26.9 38 0.0013 27.4 2.8 38 233-276 36-73 (88)
396 3f1b_A TETR-like transcription 26.8 63 0.0021 28.4 4.6 37 219-256 19-56 (203)
397 3b81_A Transcriptional regulat 26.8 64 0.0022 28.3 4.7 38 218-256 15-53 (203)
398 1u78_A TC3 transposase, transp 26.8 84 0.0029 26.5 5.3 71 77-155 24-101 (141)
399 2bgc_A PRFA; bacterial infecti 26.8 1.1E+02 0.0039 28.2 6.6 28 133-160 169-197 (238)
400 2pij_A Prophage PFL 6 CRO; tra 26.6 76 0.0026 23.3 4.4 21 236-256 15-35 (67)
401 1rp3_A RNA polymerase sigma fa 26.6 55 0.0019 30.2 4.3 28 232-259 201-228 (239)
402 3kcc_A Catabolite gene activat 26.5 1E+02 0.0034 29.2 6.3 29 132-160 216-244 (260)
403 2o8x_A Probable RNA polymerase 26.4 65 0.0022 23.7 4.0 30 134-163 32-61 (70)
404 3hug_A RNA polymerase sigma fa 26.3 61 0.0021 25.9 4.0 29 134-162 54-82 (92)
405 1qbj_A Protein (double-strande 26.2 66 0.0023 25.8 4.1 31 131-161 25-55 (81)
406 2qc0_A Uncharacterized protein 26.2 5.2E+02 0.018 26.2 12.1 29 233-261 310-338 (373)
407 2v3b_B Rubredoxin 2, rubredoxi 26.2 31 0.0011 25.8 1.9 13 21-33 4-16 (55)
408 1s3j_A YUSO protein; structura 26.1 64 0.0022 27.7 4.4 28 234-261 51-78 (155)
409 1lj9_A Transcriptional regulat 26.1 55 0.0019 27.7 3.9 29 233-261 42-70 (144)
410 2fbi_A Probable transcriptiona 26.0 41 0.0014 28.3 3.1 28 234-261 50-77 (142)
411 3lfp_A CSP231I C protein; tran 25.9 1.1E+02 0.0039 24.3 5.6 43 233-276 13-55 (98)
412 2h09_A Transcriptional regulat 25.9 55 0.0019 28.5 3.9 29 233-261 53-81 (155)
413 1umq_A Photosynthetic apparatu 25.8 43 0.0015 27.0 2.9 23 236-258 56-78 (81)
414 2o3f_A Putative HTH-type trans 25.8 45 0.0016 28.2 3.2 26 234-259 39-64 (111)
415 1z6r_A MLC protein; transcript 25.8 64 0.0022 33.1 5.0 32 230-261 26-57 (406)
416 3iwz_A CAP-like, catabolite ac 25.8 79 0.0027 28.8 5.2 29 132-160 186-214 (230)
417 3c7j_A Transcriptional regulat 25.7 50 0.0017 31.5 3.9 29 232-260 47-75 (237)
418 1pb6_A Hypothetical transcript 25.7 69 0.0023 28.4 4.7 38 218-256 22-60 (212)
419 2jne_A Hypothetical protein YF 25.7 28 0.00094 29.4 1.7 25 3-30 34-58 (101)
420 3hsr_A HTH-type transcriptiona 25.7 1.2E+02 0.0041 25.6 6.0 30 232-261 48-77 (140)
421 3he0_A Transcriptional regulat 25.6 86 0.0029 27.3 5.3 40 215-255 12-52 (196)
422 3eco_A MEPR; mutlidrug efflux 25.6 2E+02 0.007 23.8 7.6 38 123-160 37-74 (139)
423 3szt_A QCSR, quorum-sensing co 25.6 44 0.0015 31.8 3.5 29 233-261 189-217 (237)
424 1p4w_A RCSB; solution structur 25.5 66 0.0022 26.6 4.1 31 134-164 50-80 (99)
425 1zs4_A Regulatory protein CII; 25.5 47 0.0016 27.1 3.0 24 235-258 25-48 (83)
426 2rnj_A Response regulator prot 25.5 55 0.0019 26.1 3.5 32 133-164 44-75 (91)
427 1yk4_A Rubredoxin, RD; electro 25.5 33 0.0011 25.4 1.9 13 21-33 3-15 (52)
428 3gzi_A Transcriptional regulat 25.4 81 0.0028 28.1 5.1 37 219-256 22-59 (218)
429 3s8q_A R-M controller protein; 25.4 43 0.0015 25.8 2.8 40 232-276 22-61 (82)
430 3qbm_A TETR transcriptional re 25.4 71 0.0024 27.9 4.7 37 219-256 12-49 (199)
431 3k0l_A Repressor protein; heli 25.4 1.2E+02 0.0041 26.3 6.2 29 233-261 59-87 (162)
432 3f6w_A XRE-family like protein 25.2 42 0.0014 25.8 2.7 39 233-276 26-64 (83)
433 3lhq_A Acrab operon repressor 25.2 69 0.0024 28.4 4.6 37 219-256 19-56 (220)
434 2qww_A Transcriptional regulat 25.2 54 0.0019 28.2 3.7 29 233-261 54-82 (154)
435 2l1p_A DNA-binding protein SAT 25.1 40 0.0014 27.5 2.5 23 234-256 32-54 (83)
436 1t6s_A Conserved hypothetical 25.1 57 0.0019 29.9 3.9 38 218-259 10-49 (162)
437 2dk5_A DNA-directed RNA polyme 25.1 64 0.0022 26.4 3.9 28 232-259 34-61 (91)
438 2g7s_A Transcriptional regulat 25.1 55 0.0019 28.4 3.8 37 219-256 13-50 (194)
439 2wiu_B HTH-type transcriptiona 25.1 53 0.0018 25.4 3.3 40 232-276 23-62 (88)
440 3e97_A Transcriptional regulat 25.0 1.2E+02 0.0042 27.6 6.4 45 116-160 150-202 (231)
441 2ef8_A C.ECOT38IS, putative tr 24.9 44 0.0015 25.6 2.8 25 232-256 21-45 (84)
442 2ras_A Transcriptional regulat 24.9 71 0.0024 28.5 4.6 37 218-255 15-52 (212)
443 3h5o_A Transcriptional regulat 24.7 16 0.00053 36.3 0.0 25 233-257 3-27 (339)
444 1d5y_A ROB transcription facto 24.7 84 0.0029 30.2 5.4 47 222-274 8-54 (292)
445 3nqo_A MARR-family transcripti 24.5 1.1E+02 0.0037 27.7 5.8 29 232-260 55-83 (189)
446 2htj_A P fimbrial regulatory p 24.5 1.2E+02 0.0041 23.5 5.3 29 132-160 13-41 (81)
447 3kz9_A SMCR; transcriptional r 24.5 69 0.0024 28.1 4.4 37 219-256 22-59 (206)
448 1ft9_A Carbon monoxide oxidati 24.5 62 0.0021 29.6 4.2 29 132-160 162-190 (222)
449 2rae_A Transcriptional regulat 24.5 85 0.0029 27.8 5.0 39 217-256 20-59 (207)
450 3dcf_A Transcriptional regulat 24.3 71 0.0024 28.3 4.5 38 218-256 35-73 (218)
451 3uj3_X DNA-invertase; helix-tu 24.3 16 0.00055 33.8 0.0 53 208-261 133-185 (193)
452 1uxc_A FRUR (1-57), fructose r 24.3 52 0.0018 25.1 3.0 21 134-154 1-21 (65)
453 3a43_A HYPD, hydrogenase nicke 24.2 18 0.00061 32.3 0.3 20 12-31 62-81 (139)
454 2v57_A TETR family transcripti 24.1 49 0.0017 28.9 3.3 37 218-256 18-54 (190)
455 2ewt_A BLDD, putative DNA-bind 24.1 48 0.0016 24.5 2.8 40 232-276 19-60 (71)
456 3anp_C Transcriptional repress 24.0 78 0.0027 28.1 4.7 36 219-255 14-50 (204)
457 3bja_A Transcriptional regulat 24.0 1E+02 0.0035 25.6 5.2 30 232-261 45-74 (139)
458 3eus_A DNA-binding protein; st 23.9 45 0.0015 26.3 2.7 40 232-276 25-64 (86)
459 3clo_A Transcriptional regulat 23.9 48 0.0017 31.9 3.4 28 233-260 211-238 (258)
460 3crj_A Transcription regulator 23.8 78 0.0027 28.2 4.7 36 219-255 19-55 (199)
461 2ibd_A Possible transcriptiona 23.8 77 0.0026 28.2 4.6 36 219-255 19-55 (204)
462 1t33_A Putative transcriptiona 23.8 81 0.0028 28.3 4.8 37 219-256 17-53 (224)
463 3edp_A LIN2111 protein; APC883 23.7 52 0.0018 31.5 3.6 29 232-260 30-59 (236)
464 3k69_A Putative transcription 23.7 61 0.0021 29.3 3.8 38 223-261 18-55 (162)
465 3gbg_A TCP pilus virulence reg 23.7 73 0.0025 30.4 4.7 54 214-274 166-219 (276)
466 4hbl_A Transcriptional regulat 23.6 60 0.0021 27.9 3.7 29 232-260 53-81 (149)
467 3oop_A LIN2960 protein; protei 23.6 1.5E+02 0.0052 24.8 6.4 29 233-261 50-78 (143)
468 2iai_A Putative transcriptiona 23.6 77 0.0026 29.0 4.7 36 219-255 35-71 (230)
469 3o60_A LIN0861 protein; PSI, M 23.6 55 0.0019 29.4 3.6 38 219-256 24-62 (185)
470 3vib_A MTRR; helix-turn-helix 23.5 80 0.0027 28.2 4.7 36 219-255 15-51 (210)
471 2f07_A YVDT; helix-turn-helix, 23.5 81 0.0028 28.0 4.7 38 217-255 13-51 (197)
472 3s2w_A Transcriptional regulat 23.5 61 0.0021 28.2 3.8 30 232-261 62-91 (159)
473 3ech_A MEXR, multidrug resista 23.5 1.9E+02 0.0065 24.2 7.0 28 133-160 51-78 (142)
474 1x57_A Endothelial differentia 23.4 77 0.0026 24.9 4.0 42 230-276 22-63 (91)
475 2yve_A Transcriptional regulat 23.4 74 0.0025 28.0 4.4 38 218-256 8-46 (185)
476 3u2r_A Regulatory protein MARR 23.4 1.5E+02 0.0052 25.8 6.5 39 122-160 51-89 (168)
477 4ev0_A Transcription regulator 23.4 88 0.003 28.1 5.0 32 132-163 162-193 (216)
478 2xzm_9 RPS31E; ribosome, trans 23.4 38 0.0013 31.9 2.4 27 3-30 115-141 (189)
479 3iwf_A Transcription regulator 23.2 62 0.0021 27.2 3.6 27 233-259 34-60 (107)
480 1zk8_A Transcriptional regulat 23.2 79 0.0027 27.4 4.5 39 216-255 10-49 (183)
481 4hc9_A Trans-acting T-cell-spe 23.2 23 0.0008 30.6 0.8 29 3-31 7-37 (115)
482 2olm_A Nucleoporin-like protei 23.2 21 0.00071 32.1 0.5 29 3-31 27-56 (140)
483 3bwg_A Uncharacterized HTH-typ 23.1 57 0.0019 31.2 3.7 30 232-261 26-56 (239)
484 2ict_A Antitoxin HIGA; helix-t 23.0 58 0.002 25.8 3.2 38 233-275 20-57 (94)
485 2d6y_A Putative TETR family re 23.0 1E+02 0.0036 27.4 5.4 39 217-256 11-50 (202)
486 2lk0_A RNA-binding protein 5; 23.0 32 0.0011 22.8 1.3 12 18-29 3-14 (32)
487 1g2h_A Transcriptional regulat 22.9 48 0.0017 24.8 2.5 24 236-259 35-58 (61)
488 2iqj_A Stromal membrane-associ 22.8 20 0.00068 31.9 0.3 28 3-30 29-57 (134)
489 3dpj_A Transcription regulator 22.8 84 0.0029 27.5 4.6 37 219-256 13-50 (194)
490 3on4_A Transcriptional regulat 22.8 65 0.0022 27.9 3.8 39 217-256 13-52 (191)
491 1d5y_A ROB transcription facto 22.8 70 0.0024 30.8 4.4 99 118-274 5-104 (292)
492 3dew_A Transcriptional regulat 22.7 66 0.0023 28.1 3.9 39 217-256 11-50 (206)
493 2riq_A Poly [ADP-ribose] polym 22.6 37 0.0012 31.2 2.1 22 3-29 80-101 (160)
494 3hrs_A Metalloregulator SCAR; 22.6 57 0.002 30.7 3.6 30 232-261 18-47 (214)
495 3bd1_A CRO protein; transcript 22.6 57 0.002 25.0 3.0 22 236-257 13-34 (79)
496 3cwr_A Transcriptional regulat 22.6 65 0.0022 28.3 3.8 37 219-256 22-59 (208)
497 3c2b_A Transcriptional regulat 22.5 82 0.0028 28.2 4.6 38 218-256 19-57 (221)
498 1sgm_A Putative HTH-type trans 22.5 59 0.002 28.2 3.5 39 217-256 9-48 (191)
499 2frh_A SARA, staphylococcal ac 22.5 57 0.0019 27.6 3.2 29 233-261 52-80 (127)
500 1lmb_3 Protein (lambda repress 22.4 51 0.0017 25.9 2.7 39 233-276 29-67 (92)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=7.3e-56 Score=464.69 Aligned_cols=264 Identities=15% Similarity=0.255 Sum_probs=138.6
Q ss_pred CCCCCCC--CCceeccCCCceecCcccceeccccccccccccccCC------CCccccCc------------cce-----
Q 008455 3 WCSSCAR--HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAA------GQSQLSGN------------FVR----- 57 (565)
Q Consensus 3 ~Cp~Cgs--~~i~~D~~~G~~VCt~CG~Vlee~~id~~~ef~e~~~------G~s~v~G~------------~v~----- 57 (565)
.||+||+ +.+++|+.+|++||++||.||+|++||.++||+.+++ .++++++. .++
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~~~ 102 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETT 102 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCSSC
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCCCc
Confidence 7999997 5889999999999999999999999999999986541 23444321 111
Q ss_pred ---------eeccc-ccchHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHH
Q 008455 58 ---------TIQSE-YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 127 (565)
Q Consensus 58 ---------~~~~~-~~~srer~l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiAC 127 (565)
.||.+ ..+++|++|.+|+..|.++|++|+|| ++++++|..||++++++++++||+.+.++|||||+||
T Consensus 103 ~~~~~~~L~r~q~r~~~~~~er~L~~a~~~I~~~~~~L~Lp--~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiAC 180 (345)
T 4bbr_M 103 DMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELP--KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGC 180 (345)
T ss_dssp CHHHHHHHHHHHHHTCCCCSSSSTTHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHH
Confidence 12222 24778899999999999999999999 9999999999999999999999999999999999999
Q ss_pred HhcCCCccHHHHHhhhccChHHHHHHHHHHHHHhhcccccc-------ccccCCchhhHHHHHHhhCCCCCHHHHHHHHH
Q 008455 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN-------VLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 200 (565)
Q Consensus 128 R~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~~~~~-------~~~~vdP~~~I~Rf~~~L~~~l~~~V~~~A~~ 200 (565)
|++++|+||+||+++++|++++|+++|+.|.+.|++....+ ..+.++|+.||+|||+.|+ ++++|.+.|++
T Consensus 181 R~~~~prtl~eI~~~~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~--l~~~v~~~A~~ 258 (345)
T 4bbr_M 181 RRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG--LPMQVTTSAEY 258 (345)
T ss_dssp HHTCCBCCHHHHHHHHTCCTTHHHHHHHHHHHCC----------------------------------------------
T ss_pred HhcCCCccHHHHHHHhCCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcC--CcHHHHHHHHH
Confidence 99999999999999999999999999999999999852110 0235899999999999998 89999999999
Q ss_pred HHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHH
Q 008455 201 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 271 (565)
Q Consensus 201 Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f 271 (565)
|++.|.++||++||+|.+|||||||+||+++|+++|+++|++++|||++|||+||+||.+... .|...+|
T Consensus 259 i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~-~l~~~~~ 328 (345)
T 4bbr_M 259 TAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRD-KLVDPQL 328 (345)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-hhcCHHH
Confidence 999999999999999999999999999999999999999999999999999999999997755 5545554
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-54 Score=450.73 Aligned_cols=262 Identities=15% Similarity=0.257 Sum_probs=136.1
Q ss_pred CCCCCCCCC--CceeccCCCceecCcccceeccccccccccccccCC------CCccccC------------ccce----
Q 008455 2 VWCSSCARH--VTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAA------GQSQLSG------------NFVR---- 57 (565)
Q Consensus 2 ~~Cp~Cgs~--~i~~D~~~G~~VCt~CG~Vlee~~id~~~ef~e~~~------G~s~v~G------------~~v~---- 57 (565)
+.||+||+. .+++|+.+|++||++||+|++|++||++++|+.++. +++++++ ..++
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~~~~~~~~~srvG~~~~~~~~~~~l~T~I~~~~~ 101 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGET 101 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--------------CCCCCSSSCCCCCCCCCCTTS
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCccccccccccccCCCCCccCCCCCccccCCCCceeeccCCC
Confidence 479999996 689999999999999999999999999998865431 2333322 1111
Q ss_pred ----------eeccc-ccchHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHH
Q 008455 58 ----------TIQSE-YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126 (565)
Q Consensus 58 ----------~~~~~-~~~srer~l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiA 126 (565)
.||.+ ..+++|++|.+|+..|+.+|.+|+|| +.++++|..||+++++.++++||+.+.|+|||||+|
T Consensus 102 ~~~~~~r~l~~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp--~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiA 179 (345)
T 3k7a_M 102 TDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELP--KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIG 179 (345)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCC--HHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTT
T ss_pred CCchhhhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHH
Confidence 12221 24778899999999999999999999 999999999999999999999999999999999999
Q ss_pred HHhcCCCccHHHHHhhhccChHHHHHHHHHHHHHhh------------ccccccccccCCchhhHHHHHHhhCCCCCHHH
Q 008455 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY------------IADESNVLKQVDPSIFLHKFTDRLLPGGNKKV 194 (565)
Q Consensus 127 CR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~------------i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V 194 (565)
||++++|++|+||++++++++++|+++|+.|.+.|+ +..++ ++|+.||+|||+.|+ ++++|
T Consensus 180 cR~e~~prtl~ei~~~~~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~-----~~p~~~i~Rf~~~L~--l~~~v 252 (345)
T 3k7a_M 180 CRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSG-----AQNLTYIPRFCSHLG--LPMQV 252 (345)
T ss_dssp SBTTBSSCCHHHHHHSSSCCSHHHHHHHHHHHHHHTCC------------------------------------------
T ss_pred HHHcCCCccHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccccccccccccCC-----CCHHHHHHHHHHHcC--CCHHH
Confidence 999999999999999999999999999999999999 54444 899999999999998 78999
Q ss_pred HHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHH
Q 008455 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 273 (565)
Q Consensus 195 ~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~ 273 (565)
.+.|++|++.|.++|++.||+|.+|||||||||++++|+++|+++|+.++||+++||++||+||.+.. ..|++++|..
T Consensus 253 ~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~-~~l~~~~~~~ 330 (345)
T 3k7a_M 253 TTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHR-DKLVDPQLIA 330 (345)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-HhhCCHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999777 5888888873
No 3
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=100.00 E-value=1.3e-39 Score=316.16 Aligned_cols=191 Identities=27% Similarity=0.468 Sum_probs=178.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCCCccHHHHHhhh
Q 008455 64 GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143 (565)
Q Consensus 64 ~~srer~l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~~~ 143 (565)
++++|+++.+|++.|.++|++|+|| +.++++|..||++++++++++||++..++|||||+|||++++|++++||++++
T Consensus 2 ~~~~er~l~~a~~~I~~~~~~L~L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~ 79 (200)
T 1ais_B 2 SDAAERNLAFALSELDRITAQLKLP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIA 79 (200)
T ss_dssp ------CHHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4688999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHH
Q 008455 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAA 223 (565)
Q Consensus 144 ~vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAA 223 (565)
++++++|+++|+.|.+.|++..+++ .++|+.||.||++.|+ +++++.+.|++|++.+.++|+..||+|.+|||||
T Consensus 80 ~v~~~~i~~~~~~l~~~L~~~~~~~---~~~p~~~i~r~~~~L~--l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAa 154 (200)
T 1ais_B 80 RVDKKEIGRSYRFIARNLNLTPKKL---FVKPTDYVNKFADELG--LSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAA 154 (200)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCTTTT---CCCGGGGHHHHHHHHT--CCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCCcC---CCCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHH
Confidence 9999999999999999999876531 2799999999999998 8999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 224 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 224 LylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
||+||+++|.++|+++|+.++||++.||++||++|.+.
T Consensus 155 ly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~ 192 (200)
T 1ais_B 155 LYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEK 192 (200)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999853
No 4
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=100.00 E-value=9.5e-37 Score=297.63 Aligned_cols=195 Identities=22% Similarity=0.365 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCCCccHHHHHhhhccCh
Q 008455 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINV 147 (565)
Q Consensus 68 er~l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv 147 (565)
||++.+|++.|+++|.+|+|| +.++++|..||++++.+++++|+++..|+|||||+|||.+++|++++||+.+++++.
T Consensus 2 er~l~~a~~~I~~~~~~L~L~--~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~ 79 (207)
T 1c9b_A 2 DRAMMNAFKEITTMADRINLP--RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISK 79 (207)
T ss_dssp GGGHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCH
T ss_pred chHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCH
Confidence 688999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHH
Q 008455 148 YELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227 (565)
Q Consensus 148 ~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylA 227 (565)
++|+++|+.|.+.|+++.++ .+|..||.||++.|+ ++.++.+.|+.|++.+.++|+..||+|.+|||||||+|
T Consensus 80 ~~i~~~~~~ll~~L~~~l~~-----~~p~~~l~r~~~~l~--l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA 152 (207)
T 1c9b_A 80 KEIGRCFKLILKALETSVDL-----ITTGDFMSRFCSNLC--LPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMA 152 (207)
T ss_dssp HHHHHHHHHHHHHTTCCCCC-----CCTHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcCc-----CCHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHH
Confidence 99999999999999998765 899999999999998 89999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHH
Q 008455 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272 (565)
Q Consensus 228 ar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~ 272 (565)
++++|.++++++|+.+++|++.||+++|++|.+.-. .+.+++|.
T Consensus 153 ~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~-~~~p~~~~ 196 (207)
T 1c9b_A 153 SQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAP-DLFPTDFK 196 (207)
T ss_dssp HHTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHH-HHSCSSCC
T ss_pred HHHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HhChHHHc
Confidence 999999999999999999999999999999986432 33344443
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.89 E-value=1.3e-22 Score=201.46 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccC-CchhHHHHHHHHHHHHhcCCCccHHHHHhhh------
Q 008455 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG-RRTEQVQASCLYLACRQKSKPFLLIDFSNYL------ 143 (565)
Q Consensus 71 l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rG-R~~~~vaAACLYiACR~e~~p~tL~DIa~~~------ 143 (565)
...+.+.|.+++..|+|| +.++.+|..||++++..+.+++ ++...|++||||+|||.++.|+++.||+.++
T Consensus 28 R~~~~~~i~~v~~~l~L~--~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~ 105 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLR--QRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSL 105 (235)
T ss_dssp HHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccc
Confidence 456889999999999999 9999999999999999988888 9999999999999999999999999999876
Q ss_pred --ccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHH
Q 008455 144 --NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCG 221 (565)
Q Consensus 144 --~vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l~~GR~P~~Iaa 221 (565)
..+..+|.+.++.|++.|+++..+ .+|..||.+|+..++ +++++.+.|..+++.+..+++..|++|++||+
T Consensus 106 ~~~~~~~~I~~~E~~iL~~L~f~l~~-----~~P~~~l~~~~~~~~--~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAa 178 (235)
T 1zp2_A 106 KVKLSRSNISEIEFEIISVLDAFLIV-----HHPYTSLEQAFHDGI--INQKQLEFAWSIVNDSYASSLCLMAHPHQLAY 178 (235)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTTCCCC-----CCTHHHHHHHHHTTS--SCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHCCCcEEe-----cChHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCchhccCHHHHHH
Confidence 578999999999999999998765 899999999999887 78999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 222 AALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
||||+|++++|.+.+ .+.....++++.+|+.++++|.+.
T Consensus 179 Aai~lA~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~i~~l 217 (235)
T 1zp2_A 179 AALLISCCNDENTIP-KLLDLIKSTDAFKVILCVQRIISI 217 (235)
T ss_dssp HHHHHHHTSCTTHHH-HHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCC-CCcchhhcCCHHHHHHHHHHHHHH
Confidence 999999999987653 234444599999999999999854
No 6
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.83 E-value=2.3e-19 Score=180.09 Aligned_cols=181 Identities=14% Similarity=0.100 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCCCccHHHHHhhhcc------
Q 008455 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI------ 145 (565)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~~~~v------ 145 (565)
..+.+.|.+++..|+|| +.++.+|..||++++..+.+++++...|++||||+|||.++.|+++.||..+.+.
T Consensus 42 ~~~~~~i~~v~~~l~l~--~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~ 119 (258)
T 2i53_A 42 REGARFIFDVGTRLGLH--YDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQ 119 (258)
T ss_dssp HHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhh
Confidence 35789999999999999 9999999999999999999999999999999999999999999999999976431
Q ss_pred -------ChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCH----HHHHHHHHHHHHhhhccccCCC
Q 008455 146 -------NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK----KVCDTARDILASMKRDWITTGR 214 (565)
Q Consensus 146 -------sv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~----~V~~~A~~Lv~~m~~~~l~~GR 214 (565)
...+|.+..+.|++.|+.+..+ ..|..||.+|+..|+ .+. ++...|..+++.+..+++..|.
T Consensus 120 ~~~~~~~~~~~i~~~E~~iL~~L~f~l~~-----~~P~~fl~~~~~~l~--~~~~~~~~~~~~A~~l~~~s~~~~~~l~~ 192 (258)
T 2i53_A 120 FGQFGDDPKEEVMVLERILLQTIKFDLQV-----EHPYQFLLKYAKQLK--GDKNKIQKLVQMAWTFVNDSLCTTLSLQW 192 (258)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHTBC--SCHHHHHHHHHHHHHHHHHHTTTTGGGTS
T ss_pred hhhhhhhHHHHHHHHHHHHHHHCCCceec-----cChHHHHHHHHHHhC--CCcchHHHHHHHHHHHHHHHHcCCchhcc
Confidence 2568999999999999998765 789999999999997 444 7899999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCHhHHH-------HH--hccCHHHHHHHHHHHHcc
Q 008455 215 KPSGLCGAALYVSALTHGLKFSKSDIV-------KI--VHICEATLMKRLIEFENT 261 (565)
Q Consensus 215 ~P~~IaaAALylAar~~g~~~t~~eIa-------~v--~~Vse~TIrkR~kE~~~t 261 (565)
+|+.||+||||+|++++|.+++..+.. .. .++++.+|+.++++|.+.
T Consensus 193 ~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~l 248 (258)
T 2i53_A 193 EPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDL 248 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887654332 33 499999999999999864
No 7
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.82 E-value=1.1e-18 Score=175.29 Aligned_cols=188 Identities=13% Similarity=0.065 Sum_probs=162.6
Q ss_pred hHHHHH-HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCCCccHHHHHhhhc
Q 008455 66 SRERLM-EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144 (565)
Q Consensus 66 srer~l-~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~~~~ 144 (565)
..|..+ ..+.+.|.+++..|+|| +.++.+|..||++++..+.+++++...|++||||+||+.+++|+++.||..+++
T Consensus 25 ~~e~~~R~~~~~~i~~v~~~l~l~--~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~ 102 (257)
T 2ivx_A 25 DKELSCRQQAANLIQEMGQRLNVS--QLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHH
Confidence 344444 35789999999999999 999999999999999999999999999999999999999999999999987753
Q ss_pred c-----------C-------hHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 008455 145 I-----------N-------VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 206 (565)
Q Consensus 145 v-----------s-------v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~ 206 (565)
. . ..+|.+..+.|++.|+++..+ .+|..||.+|+..++ .+.++...|+.++....
T Consensus 103 ~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~-----~~P~~fl~~~~~~l~--~~~~~~~~A~~~~~~sl 175 (257)
T 2ivx_A 103 ACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITI-----EHPHTDVVKCTQLVR--ASKDLAQTSYFMATNSL 175 (257)
T ss_dssp HHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEe-----eCcHHHHHHHHHHhC--CCcHHHHHHHHHHHhhh
Confidence 1 1 677999999999999998765 889999999999997 78899999999997765
Q ss_pred -hccccCCCChhHHHHHHHHHHHHhcCCCCCHh----HHHHH--hccCHHHHHHHHHHHHccC
Q 008455 207 -RDWITTGRKPSGLCGAALYVSALTHGLKFSKS----DIVKI--VHICEATLMKRLIEFENTD 262 (565)
Q Consensus 207 -~~~l~~GR~P~~IaaAALylAar~~g~~~t~~----eIa~v--~~Vse~TIrkR~kE~~~t~ 262 (565)
...+..+.+|+.||+||||+|++++|.++++. .+... .++++.+|+.++++|.+..
T Consensus 176 ~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 176 HLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQIL 238 (257)
T ss_dssp HHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHH
T ss_pred hcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999887653 35554 3799999999999998543
No 8
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.78 E-value=6.2e-18 Score=172.74 Aligned_cols=185 Identities=10% Similarity=0.048 Sum_probs=164.7
Q ss_pred hHHHHH-HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCCCc-cHHHHHhhh
Q 008455 66 SRERLM-EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF-LLIDFSNYL 143 (565)
Q Consensus 66 srer~l-~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~-tL~DIa~~~ 143 (565)
..++.+ ..+.+.|.+++..|+|| +.++.+|..||++++..+.+++++...|++||||+||+.+++|+ ++.||..++
T Consensus 37 ~~e~~~R~~~~~~I~~v~~~l~L~--~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~ 114 (285)
T 3rgf_B 37 EEYWKLQIFFTNVIQALGEHLKLR--QQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAA 114 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 344444 35679999999999999 99999999999999999999999999999999999999999987 688887654
Q ss_pred c----------------cChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 008455 144 N----------------INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKR 207 (565)
Q Consensus 144 ~----------------vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~ 207 (565)
. ....+|.+..+.|++.|+++..+ ..|..||.+|+..|+ .+.++.+.|+.+++....
T Consensus 115 ~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v-----~~P~~fL~~~~~~l~--~~~~~~~~A~~~l~~sl~ 187 (285)
T 3rgf_B 115 TSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIV-----YHPYRPLLQYVQDMG--QEDMLLPLAWRIVNDTYR 187 (285)
T ss_dssp HHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCC-----CCSHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTT
T ss_pred HHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEe-----CChHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHc
Confidence 2 35688999999999999998765 789999999999998 788999999999999988
Q ss_pred ccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 208 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 208 ~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+.+..+..|+.||+||||+|+++.|.+. ...-..+++++..|...+++|.+.
T Consensus 188 t~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~~~~il~l 239 (285)
T 3rgf_B 188 TDLCLLYPPFMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEIIRVILKL 239 (285)
T ss_dssp SSHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHHHHHHHHH
T ss_pred cChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHHHHHHHHH
Confidence 8888899999999999999999998765 567888999999999999998743
No 9
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.78 E-value=3.9e-18 Score=172.77 Aligned_cols=179 Identities=11% Similarity=0.091 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCC-CccHHHHHhhhc--cChHH
Q 008455 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYE 149 (565)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-p~tL~DIa~~~~--vsv~~ 149 (565)
...+.|.+++..++++ ..+...|..++++.+....+.+++...+++||||+|||.++. |.++.||..+++ .+..+
T Consensus 40 ~lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~e 117 (269)
T 2b9r_A 40 ILIDWLVQVQMKFRLL--QETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQ 117 (269)
T ss_dssp HHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHH
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHH
Confidence 4678899999999999 999999999999999998888899999999999999999887 899999999885 78999
Q ss_pred HHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHH
Q 008455 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 229 (565)
Q Consensus 150 Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar 229 (565)
|.+..+.|.+.|+.+..+ ..|..|+.||+..++ .+.++...|..|++....+....|.+|+.||+||||+|++
T Consensus 118 I~~mE~~IL~~L~f~l~~-----~tp~~fl~~~~~~~~--~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~ 190 (269)
T 2b9r_A 118 IRQMEMKILRALNFGLGR-----PLPLHFLRRASKIGE--VDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALK 190 (269)
T ss_dssp HHHHHHHHHHHTTSCCCC-----CCHHHHHHHHHHSSC--CCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCC-----CCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHH
Confidence 999999999999998765 789999999999887 7889999999999998888888999999999999999999
Q ss_pred hcCCCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 230 THGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 230 ~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
+.|.+...+++...+|+++.+|+.++++|.+
T Consensus 191 ~l~~~~w~~~l~~~tg~~~~~l~~~~~~l~~ 221 (269)
T 2b9r_A 191 ILDNGEWTPTLQHYLSYTEESLLPVMQHLAK 221 (269)
T ss_dssp HHTCCCSCTTHHHHSCCCSSTTTTHHHHHHH
T ss_pred HhCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999888999999999999999999999863
No 10
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.75 E-value=2.2e-17 Score=166.28 Aligned_cols=181 Identities=15% Similarity=0.096 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCC-CccHHHHHhhhc--cChH
Q 008455 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVY 148 (565)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-p~tL~DIa~~~~--vsv~ 148 (565)
..+.+.|.+++..++|+ ..+.-.|..++.+.+...-+..++...+++||||+|||.++. |.++.||..+.+ .+..
T Consensus 40 ~~lvdwl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~ 117 (260)
T 2cch_B 40 AILVDWLVEVGEEYKLQ--NETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 117 (260)
T ss_dssp HHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHH
T ss_pred HHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHH
Confidence 34678899999999999 999999999999999887777778899999999999999998 999999998874 7899
Q ss_pred HHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccc-cCCCChhHHHHHHHHHH
Q 008455 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWI-TTGRKPSGLCGAALYVS 227 (565)
Q Consensus 149 ~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l-~~GR~P~~IaaAALylA 227 (565)
+|.+..+.|.+.|+....+ ..|..|+.+|+..++. -.+++...|..+++....+.. ..|.+|+.||+||||+|
T Consensus 118 ~i~~mE~~iL~~L~~~l~~-----~tp~~fl~~~~~~l~~-~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA 191 (260)
T 2cch_B 118 QVLRMEHLVLKVLTFDLAA-----PTVNQFLTQYFLHQQP-ANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLA 191 (260)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHTTCSS-CCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCC-----CCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999998765 7899999999999962 134888999999988655554 78999999999999999
Q ss_pred HHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 228 ar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
++..|.+...++++.++|+++.+|+.++++|.+
T Consensus 192 ~~~~~~~~w~~~l~~~~g~~~~~i~~~~~~l~~ 224 (260)
T 2cch_B 192 LYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQ 224 (260)
T ss_dssp HHHHHSCCSCHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHhCCCcchHHHHHHhCcCHHHHHHHHHHHHH
Confidence 999988888999999999999999999999974
No 11
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.75 E-value=5e-18 Score=178.75 Aligned_cols=188 Identities=14% Similarity=0.075 Sum_probs=161.4
Q ss_pred HHHHH-HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCCCccHHHHHhhhcc
Q 008455 67 RERLM-EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145 (565)
Q Consensus 67 rer~l-~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~~~~v 145 (565)
.|..+ ..+.+.|.+++..|+|| +.++.+|..||++++..+.+++++...|++||||+||+.+.+|+++.||..++..
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~--~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~ 110 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVS--QLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHT 110 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 34444 34789999999999999 9999999999999999999999999999999999999999999999999876531
Q ss_pred ------------------ChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHHHHHHHHHHhh-
Q 008455 146 ------------------NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK- 206 (565)
Q Consensus 146 ------------------sv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~- 206 (565)
...+|.+..+.|++.|+++..+ .+|..||.+|+..|. .+.++...|+.|+....
T Consensus 111 ~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v-----~~P~~fL~~~~~~l~--~~~~l~~~A~~ll~~sl~ 183 (358)
T 2pk2_A 111 CLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTI-----DHPHTHVVKCTQLVR--ASKDLAQTSYFMATNSLH 183 (358)
T ss_dssp HHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCC-----CCTTHHHHHHHHHTT--CCHHHHHHHHHHHHHHTT
T ss_pred HhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeC-----CCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHh
Confidence 1567888999999999998765 889999999999997 78899999999997765
Q ss_pred hccccCCCChhHHHHHHHHHHHHhcCCCCCHh----HHHHH--hccCHHHHHHHHHHHHccCC
Q 008455 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKS----DIVKI--VHICEATLMKRLIEFENTDS 263 (565)
Q Consensus 207 ~~~l~~GR~P~~IaaAALylAar~~g~~~t~~----eIa~v--~~Vse~TIrkR~kE~~~t~s 263 (565)
...+..+..|+.||+||||+|+++++.++++. .+..+ ++|++.+|+.++++|.+...
T Consensus 184 ~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 184 LTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILE 246 (358)
T ss_dssp TSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHHHTT
T ss_pred cCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 35556889999999999999999999887653 35555 47899999999999986543
No 12
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.73 E-value=6.1e-17 Score=164.04 Aligned_cols=180 Identities=16% Similarity=0.166 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCC-CccHHHHHhhhc--cChHH
Q 008455 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYE 149 (565)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-p~tL~DIa~~~~--vsv~~ 149 (565)
...+.|.+++..++++ ..+.-.|..++.+.+...-+..++...+++||||+||+.+++ |.++.||+.+.+ .+..+
T Consensus 59 ~lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~e 136 (271)
T 2w96_A 59 IVATWMLEVCEEQKCE--EEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEE 136 (271)
T ss_dssp HHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHH
T ss_pred HHHHHHHHHHHHHCCc--hhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHH
Confidence 4668899999999999 899999999999999988888889999999999999999988 999999998864 78999
Q ss_pred HHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHH----HHHHHHHHHHhhhccccCCCChhHHHHHHHH
Q 008455 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV----CDTARDILASMKRDWITTGRKPSGLCGAALY 225 (565)
Q Consensus 150 Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V----~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALy 225 (565)
|.+..+.|.+.|+....+ +.|..|+.+|+..++ .+.++ ...|..+++....+....|.+|+.||+||||
T Consensus 137 I~~mE~~IL~~L~~~l~~-----~tp~~fl~~~~~~l~--~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~ 209 (271)
T 2w96_A 137 LLQMELLLVNKLKWNLAA-----MTPHDFIEHFLSKMP--EAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVV 209 (271)
T ss_dssp HHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCccCC-----CCHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence 999999999999998766 889999999999997 55544 3567777776666665678999999999999
Q ss_pred HHHHhcCC---------CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 226 VSALTHGL---------KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 226 lAar~~g~---------~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+|++..|. ..+++.++.++|+++.+|+.++++|.+.
T Consensus 210 lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l 254 (271)
T 2w96_A 210 AAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEAL 254 (271)
T ss_dssp HHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99988753 1246789999999999999999999853
No 13
>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} SCOP: j.104.1.1
Probab=99.71 E-value=1.5e-18 Score=139.16 Aligned_cols=52 Identities=38% Similarity=0.610 Sum_probs=48.4
Q ss_pred ccCCCCCCCCCCCChHHHhhcCCChHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q 008455 407 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAA 458 (565)
Q Consensus 407 ~~~~~~~~~lsdiDD~Eid~~il~eeE~~~K~~iW~~~N~eyl~eq~~K~~~ 458 (565)
..+++++++||||||+|||+|||||+||++|++||+++|+|||++|++|+++
T Consensus 19 ~~~~dd~~~lsDiDD~Eid~yiLteeEv~~K~~iW~~~N~dyL~eq~~K~~k 70 (72)
T 1ngm_B 19 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLK 70 (72)
T ss_dssp TTSCCCSSCCTTSCCSSGGGSSCCHHHHHHHHHHHHHHTTTHHHHHHHTTTT
T ss_pred HhccCCccccccCCHHHHHHhhCCHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3456788999999999999999999999999999999999999999999875
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.70 E-value=4.3e-16 Score=161.85 Aligned_cols=165 Identities=16% Similarity=0.115 Sum_probs=144.8
Q ss_pred chHHHHHH-HHHHHHHHHHHHcC--CCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCCCccHHHHHh
Q 008455 65 ASRERLME-KAFDDMRQMKNALN--IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 141 (565)
Q Consensus 65 ~srer~l~-~a~~~I~~ia~~L~--Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~ 141 (565)
...|+.+. .+...|.++|..|+ || +.++.+|..||++++..+.+++.++..|++||||+||+.+++|+++.||+.
T Consensus 50 ~eeE~~lr~~~~~~I~ev~~~l~~~Lp--~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~ 127 (323)
T 1jkw_A 50 PHEEMTLCKYYEKRLLEFCSVFKPAMP--RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVG 127 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCC--HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHH
Confidence 44456654 45699999999999 99 999999999999999999999999999999999999999999999999998
Q ss_pred hhccC-------hHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhC-----CCCCHHHHHHHHHHHHHhhhcc
Q 008455 142 YLNIN-------VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL-----PGGNKKVCDTARDILASMKRDW 209 (565)
Q Consensus 142 ~~~vs-------v~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~-----~~l~~~V~~~A~~Lv~~m~~~~ 209 (565)
++..+ ..+|.+..+.|++.|+++..+ ..|..||.+|+..|. .+.+..+...|+.+++.+..+.
T Consensus 128 ~~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v-----~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~ 202 (323)
T 1jkw_A 128 NLRESPLGQEKALEQILEYELLLIQQLNFHLIV-----HNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTD 202 (323)
T ss_dssp GSSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCC-----CCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTST
T ss_pred HhccChhhhHHHHHHHHHHHHHHHHHCCCcEEc-----CChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 77655 477999999999999998765 889999999998761 1234678899999999988877
Q ss_pred ccCCCChhHHHHHHHHHHHHhcCCCCC
Q 008455 210 ITTGRKPSGLCGAALYVSALTHGLKFS 236 (565)
Q Consensus 210 l~~GR~P~~IaaAALylAar~~g~~~t 236 (565)
+..+..|+.||+||||+|++.+|.+++
T Consensus 203 ~~l~~~Ps~IAaAai~lA~~~~~~~~~ 229 (323)
T 1jkw_A 203 AYLLYTPSQIALTAILSSASRAGITME 229 (323)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSCCCT
T ss_pred HHHcCCHHHHHHHHHHHHHHHcCCChH
Confidence 778999999999999999999998765
No 15
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.67 E-value=2.7e-15 Score=150.47 Aligned_cols=180 Identities=12% Similarity=0.144 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcC-CCccHHHHHhhhc--cChHH
Q 008455 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS-KPFLLIDFSNYLN--INVYE 149 (565)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~-~p~tL~DIa~~~~--vsv~~ 149 (565)
...+.|-+++..++++ ..+.-.|..|+.+++..+.+++++...+++||||+||+.+. .|.++.||+.+++ .+..+
T Consensus 54 ~lvdwl~~v~~~~~l~--~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~ 131 (254)
T 2f2c_A 54 ILLTWMHLLCESFELD--KSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLE 131 (254)
T ss_dssp HHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHH
T ss_pred HHHHHHHHHHHHHCCC--chHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHH
Confidence 4578899999999999 99999999999999999888899999999999999999976 5999999988764 78999
Q ss_pred HHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHH----HHHHHHHHHHHhhhccccCCCChhHHHHHHHH
Q 008455 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK----VCDTARDILASMKRDWITTGRKPSGLCGAALY 225 (565)
Q Consensus 150 Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~----V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALy 225 (565)
|.+..+.|.+.|+....+ +.|..|+.+|+..++ .+.+ +...|..+++....+....+.+|+.||+||||
T Consensus 132 i~~mE~~IL~~L~~~l~~-----~tp~~fl~~~~~~~~--~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~ 204 (254)
T 2f2c_A 132 LINQEKDILEALKWDTEA-----VLATDFLIPLCNALK--IPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLL 204 (254)
T ss_dssp HHHHHHHHHHHTTTCCCC-----CCGGGSHHHHHHHTT--CCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCCC-----CCHHHHHHHHHHHcC--CChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHH
Confidence 999999999999998765 889999999999996 3322 45668888887766777789999999999999
Q ss_pred HHHHhcC-CCCC----HhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 226 VSALTHG-LKFS----KSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 226 lAar~~g-~~~t----~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+|.+..+ .+.+ ...++.++|+++.+|+.+++.+.+.
T Consensus 205 la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~ 245 (254)
T 2f2c_A 205 TTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEA 245 (254)
T ss_dssp HHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999873 3455 8899999999999999999998743
No 16
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.66 E-value=1.1e-15 Score=153.53 Aligned_cols=181 Identities=13% Similarity=0.045 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCC-CccHHHHHhhhc--cChHH
Q 008455 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYE 149 (565)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~-p~tL~DIa~~~~--vsv~~ 149 (565)
...+.|.+++..++++ ..+.-.|..|+.+++..+.+++++...+++||||+||+.+.. |.++.||+.+++ .+..+
T Consensus 53 ~lvdwl~ev~~~~~l~--~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~ 130 (257)
T 1g3n_C 53 LLGTWMFSVCQEYNLE--PNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQE 130 (257)
T ss_dssp HHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHH
Confidence 4578899999999999 999999999999999988888888999999999999998765 999999998865 78999
Q ss_pred HHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCC-C-HHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHH
Q 008455 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227 (565)
Q Consensus 150 Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l-~-~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylA 227 (565)
|.+..+.|.+.|+....+ +.|..|+.+|+..++.+. . ..+...|..+++....+....+.+|+.||+||||+|
T Consensus 131 i~~mE~~iL~~L~~~l~~-----~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA 205 (257)
T 1g3n_C 131 LIDQEKELLEKLAWRTEA-----VLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALL 205 (257)
T ss_dssp HHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCCC-----CCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHH
Confidence 999999999999998765 889999999999996221 1 234566888887776677778999999999999999
Q ss_pred HHhcCC------CCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 228 ALTHGL------KFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 228 ar~~g~------~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
.+..|. +.....++..+|+++.+|+.+++.|.+
T Consensus 206 ~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~ 244 (257)
T 1g3n_C 206 VPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILT 244 (257)
T ss_dssp CCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 998885 345788999999999999999999874
No 17
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.60 E-value=2.4e-14 Score=145.94 Aligned_cols=173 Identities=13% Similarity=0.074 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC-ccccCCchhHHHHHHHHHHHHhcCC-CccHHHHHhhhc--cChH
Q 008455 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR-NFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVY 148 (565)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~-~~~rGR~~~~vaAACLYiACR~e~~-p~tL~DIa~~~~--vsv~ 148 (565)
...+.|.+++..++++ ..+.-.|..++.+.+.. +.++++....+++||||+||+.++. |.++.||+.+++ .+..
T Consensus 52 ~lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ 129 (283)
T 1w98_B 52 ILLDWLMEVCEVYKLH--RETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGD 129 (283)
T ss_dssp HHHHHHHHHHHHTTCB--HHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHH
T ss_pred HHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHH
Confidence 4568899999999999 99999999999999987 5678889999999999999999876 899999998874 7899
Q ss_pred HHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCC---------CHHHHHHHHHHHHHhhhccccCCCChhHH
Q 008455 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG---------NKKVCDTARDILASMKRDWITTGRKPSGL 219 (565)
Q Consensus 149 ~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l---------~~~V~~~A~~Lv~~m~~~~l~~GR~P~~I 219 (565)
+|.+..+.|.+.|+....+ +.|..|+.+|+..++... +......+..+++....+.-..|.+|+.|
T Consensus 130 ei~~mE~~IL~~L~~~l~~-----~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~i 204 (283)
T 1w98_B 130 EILTMELMIMKALKWRLSP-----LTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGIL 204 (283)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHH
T ss_pred HHHHHHHHHHHHcCCcCCC-----CCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHH
Confidence 9999999999999998766 889999999999885211 12333445567766555555789999999
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 220 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 220 aaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
||||||+|+ ..+.+..++|+++.+|+.++++|.
T Consensus 205 AaAai~la~-------~~~~l~~~tg~~~~~i~~c~~~l~ 237 (283)
T 1w98_B 205 AASALYHFS-------SSELMQKVSGYQWCDIENCVKWMV 237 (283)
T ss_dssp HHHHHHHTS-------CHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------ChHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999985 278899999999999999999997
No 18
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.57 E-value=7.5e-14 Score=143.95 Aligned_cols=185 Identities=15% Similarity=0.088 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhc-CCCccHHHHHhhhc--cChH
Q 008455 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLN--INVY 148 (565)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e-~~p~tL~DIa~~~~--vsv~ 148 (565)
..+.+.|.+++..++|+ ..+.-.|..||.+.+....+.......++++||||||+.+ ..|.++.+|..+.+ .+..
T Consensus 72 ~~lvdwl~ev~~~~~l~--~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~ 149 (306)
T 3g33_B 72 KMLAYWMLEVCEEQRCE--EEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPR 149 (306)
T ss_dssp HHHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHHhCCc--HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHH
Confidence 35678999999999999 9999999999999999888888899999999999999985 56889999998875 6889
Q ss_pred HHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCC-CC-HHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHH
Q 008455 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GN-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226 (565)
Q Consensus 149 ~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~-l~-~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALyl 226 (565)
+|.+..+.|++.|+....+ ..|..||.+|...+... .. ..+...|..+++....+....+.+|+.||+||||+
T Consensus 150 ~i~~mE~~IL~~L~f~l~~-----~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~l 224 (306)
T 3g33_B 150 QLRDWEVLVLGKLKWDLAA-----VIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGA 224 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCC-----CCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHH
Confidence 9999999999999998765 78999999999998522 11 23556788888877777778899999999999999
Q ss_pred HHHhcCCCCCH-----hHHHHHhccCHHHHHHHHHHHHccCC
Q 008455 227 SALTHGLKFSK-----SDIVKIVHICEATLMKRLIEFENTDS 263 (565)
Q Consensus 227 Aar~~g~~~t~-----~eIa~v~~Vse~TIrkR~kE~~~t~s 263 (565)
|.+..+..... ..+..++|+++.+|+.+++.|.+.-.
T Consensus 225 A~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~ 266 (306)
T 3g33_B 225 AVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALR 266 (306)
T ss_dssp HHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99998865432 67789999999999999999985443
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.33 E-value=5e-12 Score=121.93 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHH
Q 008455 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 153 (565)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~ 153 (565)
...+|.++++.|+++ +.+.+.|..+++.+...+++.||++..++|||||+|||.+|.|+++.||+.+++|+..+|++.
T Consensus 108 p~~~i~r~~~~L~l~--~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~ 185 (200)
T 1ais_B 108 PTDYVNKFADELGLS--EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNR 185 (200)
T ss_dssp GGGGHHHHHHHHTCC--HHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHH
Confidence 457899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccc
Q 008455 154 YLQLCQVLYIADES 167 (565)
Q Consensus 154 ~~~L~~~L~i~~~~ 167 (565)
|+.|.+.|+++.+|
T Consensus 186 ~~~l~~~l~~~~~~ 199 (200)
T 1ais_B 186 YKELVEKLKIKVPI 199 (200)
T ss_dssp HHHHHHHHTCCCCC
T ss_pred HHHHHHHcCCCCCC
Confidence 99999999987644
No 20
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=99.12 E-value=3e-11 Score=94.13 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=41.3
Q ss_pred CCCCCCCCCCceeccCCCceecCcccceeccccccccccccccC
Q 008455 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA 45 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~~id~~~ef~e~~ 45 (565)
+.||.||+..+++|+..|++||+.||.|+++++||.+|+|+.++
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F~ 55 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFS 55 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCSC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEEeccccccCCcccccC
Confidence 37999999889999999999999999999999999999999875
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.10 E-value=3.7e-10 Score=109.43 Aligned_cols=91 Identities=14% Similarity=0.124 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHH
Q 008455 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 153 (565)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~ 153 (565)
....|.++++.|+++ +.+...|..+++.+...++..|+++..+||||||+|||..|.++++.+|+.+++|+..+|++.
T Consensus 102 p~~~l~r~~~~l~l~--~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~ 179 (207)
T 1c9b_A 102 TGDFMSRFCSNLCLP--KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQS 179 (207)
T ss_dssp THHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHH
Confidence 468899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccc
Q 008455 154 YLQLCQVLYIADE 166 (565)
Q Consensus 154 ~~~L~~~L~i~~~ 166 (565)
|+.|.+.++...|
T Consensus 180 ~~~l~~~l~~~~p 192 (207)
T 1c9b_A 180 YRLIYPRAPDLFP 192 (207)
T ss_dssp HHHHGGGHHHHSC
T ss_pred HHHHHHHHHHhCh
Confidence 9999999997653
No 22
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.97 E-value=3.1e-08 Score=99.26 Aligned_cols=177 Identities=9% Similarity=0.015 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcC-CCccHHHHHhhhc--cChHH
Q 008455 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS-KPFLLIDFSNYLN--INVYE 149 (565)
Q Consensus 73 ~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~-~p~tL~DIa~~~~--vsv~~ 149 (565)
...+.|-+++..++++ ..+.-.|..|+.+.+...-+.......++++|+|||++.+. .|..+.++...++ .+..+
T Consensus 51 ~lvdWl~ev~~~~~l~--~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~ 128 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQD--NNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADK 128 (252)
T ss_dssp HHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHH
Confidence 3567899999999999 89999999999999987766667788899999999999765 4889999988764 67889
Q ss_pred HHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHH----HHHHHHHHHHHhhhccccCCCChhHHHHHHHH
Q 008455 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK----VCDTARDILASMKRDWITTGRKPSGLCGAALY 225 (565)
Q Consensus 150 Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~----V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALy 225 (565)
|.+.-+.|.+.|+....+ +.|..|+.+|...++ .+.+ +...|..++.....+.-..+-+|+-||+||++
T Consensus 129 i~~mE~~IL~~L~w~l~~-----pTp~~FL~~~l~~~~--~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~ 201 (252)
T 1f5q_B 129 LLTLEVKSLDTLSWVADR-----CLSTDLICYILHIMH--APREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMH 201 (252)
T ss_dssp HHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCccCC-----CCHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHH
Confidence 999999999999988765 789999999999986 4433 44566666666555555568999999999965
Q ss_pred HHHHhcCCCCC----HhHHHHHhccCHHHHHHHHHHHHc
Q 008455 226 VSALTHGLKFS----KSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 226 lAar~~g~~~t----~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
++. .+...+ ...+...+|++...|+.+++.+.+
T Consensus 202 ~~l--~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~ 238 (252)
T 1f5q_B 202 LTM--NQKYDYYENRIDGVCKSLYITKEELHQCCDLVDI 238 (252)
T ss_dssp HHH--TTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHh--ccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 443 222222 345778899999999988877763
No 23
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=98.91 E-value=8e-10 Score=83.42 Aligned_cols=43 Identities=19% Similarity=0.459 Sum_probs=40.5
Q ss_pred CCCCCCCCCceeccCCCceecCcccceeccccccccccccccC
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA 45 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~~id~~~ef~e~~ 45 (565)
.||.||+..+++|+..|++||..||.|++++.|+.+++|+.++
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCCcccccccccCCcccccC
Confidence 6999999789999999999999999999999999999999775
No 24
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.1e-09 Score=101.87 Aligned_cols=43 Identities=23% Similarity=0.430 Sum_probs=39.8
Q ss_pred CCCCCCC--CCceeccCCCceecCcccceeccccccccccccccC
Q 008455 3 WCSSCAR--HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA 45 (565)
Q Consensus 3 ~Cp~Cgs--~~i~~D~~~G~~VCt~CG~Vlee~~id~~~ef~e~~ 45 (565)
.||.||+ ..+++|+.+|++||++||.||++++||.+++|+.++
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID~GPEWRAFs 67 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFS 67 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHHHHHH
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeECCCCCcCcC
Confidence 6999998 478999999999999999999999999999999755
No 25
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.62 E-value=8.4e-08 Score=100.32 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=82.7
Q ss_pred cCCchhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHH
Q 008455 172 QVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251 (565)
Q Consensus 172 ~vdP~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vse~TI 251 (565)
+......|.++|+.|+ ++..|..+|..|.+++....+..||+..+|+|||||+|||.++.++|++||+.+++|+...|
T Consensus 126 L~~a~~~I~~~~~~L~--Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~~kei 203 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAE--LPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEF 203 (345)
T ss_dssp TTHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCCHHHH
Confidence 3456678999999999 99999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccC
Q 008455 252 MKRLIEFENTD 262 (565)
Q Consensus 252 rkR~kE~~~t~ 262 (565)
.+.|+.|...-
T Consensus 204 gr~~k~l~~~L 214 (345)
T 4bbr_M 204 GKTLNIMKNIL 214 (345)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHh
Confidence 99999987543
No 26
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.3e-08 Score=106.56 Aligned_cols=86 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHH
Q 008455 75 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVY 154 (565)
Q Consensus 75 ~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~ 154 (565)
..+|.++|+.|+|+ ..+...|..|.+.+...+++.||++..+||||||+||+.++.+++.++|+.+++|+..+|...|
T Consensus 236 ~~~i~Rf~~~L~l~--~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~y 313 (345)
T 3k7a_M 236 LTYIPRFCSHLGLP--MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGY 313 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 46778999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 008455 155 LQLCQVLY 162 (565)
Q Consensus 155 ~~L~~~L~ 162 (565)
+.|...+.
T Consensus 314 kel~~~~~ 321 (345)
T 3k7a_M 314 KILYEHRD 321 (345)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 99988774
No 27
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.53 E-value=0.00043 Score=67.93 Aligned_cols=86 Identities=15% Similarity=0.102 Sum_probs=70.9
Q ss_pred hhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccccCC-CChhHHHHHHHHHHHHhcCCCCCHhHHHHHh--------cc
Q 008455 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG-RKPSGLCGAALYVSALTHGLKFSKSDIVKIV--------HI 246 (565)
Q Consensus 176 ~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l~~G-R~P~~IaaAALylAar~~g~~~t~~eIa~v~--------~V 246 (565)
..+|.+++..|+ +++.+..+|..+++++-....+.| ++|..|++|||||||++.+.++++++|+.++ .+
T Consensus 32 ~~~i~~v~~~l~--L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~ 109 (235)
T 1zp2_A 32 WKVVQTFGDRLR--LRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKL 109 (235)
T ss_dssp HHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhc
Confidence 457888999998 999999999999999876666677 9999999999999999999999999999876 35
Q ss_pred CHHHHHHHHHHHHccCC
Q 008455 247 CEATLMKRLIEFENTDS 263 (565)
Q Consensus 247 se~TIrkR~kE~~~t~s 263 (565)
+...|.+....+..+-.
T Consensus 110 ~~~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 110 SRSNISEIEFEIISVLD 126 (235)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHCC
Confidence 56666665555554433
No 28
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=97.09 E-value=0.0067 Score=57.85 Aligned_cols=88 Identities=15% Similarity=0.256 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCc---hhHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHH
Q 008455 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR---TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 150 (565)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~---~~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~L 150 (565)
....|.++..+-++| +.|.+.|..+.+.++...--+|.+ ...|+|||+.||..+.+.|+++.|+--.- -+..+|
T Consensus 15 M~nclr~L~kKs~~~--eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~lD-~sL~Dv 91 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLP--EPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCLD-SSLGDV 91 (260)
T ss_dssp HHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHC-TTCCCH
T ss_pred HHHHHHHHHhhccCc--HHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHHh-hhhhHH
Confidence 456778888899999 999999999999998876666654 46799999999999999999999886442 222233
Q ss_pred HHHHHHHHHHhhcc
Q 008455 151 GAVYLQLCQVLYIA 164 (565)
Q Consensus 151 gr~~~~L~~~L~i~ 164 (565)
.-.-..|++.|++.
T Consensus 92 elrr~Eiv~~l~l~ 105 (260)
T 3h4c_A 92 ELRRADIVRELHLE 105 (260)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHccCC
Confidence 33334555555553
No 29
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=96.80 E-value=0.0047 Score=61.19 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=62.1
Q ss_pred hhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhc
Q 008455 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245 (565)
Q Consensus 176 ~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~ 245 (565)
..+|.+++..|+ +++.+..+|..+++++-....+.+++|..|++|||||||++.+.++++++|+.+++
T Consensus 35 ~~~i~~v~~~l~--l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~ 102 (257)
T 2ivx_A 35 ANLIQEMGQRLN--VSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHH
Confidence 467888999998 99999999999999988777789999999999999999999999999999988764
No 30
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=96.78 E-value=0.005 Score=60.93 Aligned_cols=68 Identities=12% Similarity=-0.018 Sum_probs=61.5
Q ss_pred hhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhc
Q 008455 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245 (565)
Q Consensus 176 ~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~ 245 (565)
..+|.+++..|+ +++.+..+|..+++++-....+.++.+..|++|||||||++.+.++++++|+.+++
T Consensus 45 ~~~i~~v~~~l~--l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~ 112 (258)
T 2i53_A 45 ARFIFDVGTRLG--LHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTAR 112 (258)
T ss_dssp HHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHH
Confidence 357888999998 99999999999999987777788999999999999999999999999999998754
No 31
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=96.69 E-value=0.0048 Score=61.41 Aligned_cols=88 Identities=8% Similarity=-0.044 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCCChh-HHHHHHHHHHHHHH-hCccccCCchhHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHH
Q 008455 74 AFDDMRQMKNALNIGESD-EIVHVAKRFYGIAV-ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 151 (565)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~-~i~e~A~~iyk~a~-~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lg 151 (565)
....|..++..++++ . .+...|..+...+. +...+-+.++..+||||||+|++..+.+....+++.++|++..+|.
T Consensus 139 p~~fl~~~~~~l~~~--~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~~~i~ 216 (260)
T 2cch_B 139 VNQFLTQYFLHQQPA--NCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLK 216 (260)
T ss_dssp HHHHHHHHHTTCSSC--CHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCHHHHH
Confidence 467888999999988 5 78888888888865 4442567899999999999999988878888899999999999999
Q ss_pred HHHHHHHHHhhc
Q 008455 152 AVYLQLCQVLYI 163 (565)
Q Consensus 152 r~~~~L~~~L~i 163 (565)
..++.|...+..
T Consensus 217 ~~~~~l~~~~~~ 228 (260)
T 2cch_B 217 PCLMDLHQTYLK 228 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 32
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=96.68 E-value=0.0028 Score=63.47 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHH
Q 008455 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 153 (565)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~ 153 (565)
....|.+++..++++ ..+...|..+...+.....+-|.++..+||||||+|++..|.+....+++.++|++..+|...
T Consensus 138 p~~fl~~~~~~~~~~--~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~tg~~~~~l~~~ 215 (269)
T 2b9r_A 138 PLHFLRRASKIGEVD--VEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYLSYTEESLLPV 215 (269)
T ss_dssp HHHHHHHHHHSSCCC--HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHSCCCSSTTTTH
T ss_pred HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHCCCHHHHHHH
Confidence 457788899999998 888888998888887666667899999999999999999988877788999999999999999
Q ss_pred HHHHHHHhh
Q 008455 154 YLQLCQVLY 162 (565)
Q Consensus 154 ~~~L~~~L~ 162 (565)
++.|.+.+.
T Consensus 216 ~~~l~~~~~ 224 (269)
T 2b9r_A 216 MQHLAKNVV 224 (269)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988654
No 33
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=96.57 E-value=0.01 Score=59.91 Aligned_cols=67 Identities=9% Similarity=0.169 Sum_probs=60.0
Q ss_pred hhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCC-CHhHHHHHh
Q 008455 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF-SKSDIVKIV 244 (565)
Q Consensus 176 ~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~-t~~eIa~v~ 244 (565)
..+|.+++..|+ +++.+..+|..+++++-....+.++.|..|++|||||||++.+..+ ++++|+.++
T Consensus 47 ~~~I~~v~~~l~--L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~ 114 (285)
T 3rgf_B 47 TNVIQALGEHLK--LRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAA 114 (285)
T ss_dssp HHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 457888899998 9999999999999998877788999999999999999999999987 688888765
No 34
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=96.55 E-value=0.012 Score=60.69 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=61.0
Q ss_pred hhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccC
Q 008455 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247 (565)
Q Consensus 177 ~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vs 247 (565)
.+|.+++..|...+++.+..+|..+++++-....+.++.|..|++|||||||++.+.++++++|+.++...
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccC
Confidence 45667777764337899999999999999887788999999999999999999999999999998876544
No 35
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=96.38 E-value=0.0058 Score=63.91 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=61.6
Q ss_pred hhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhc
Q 008455 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245 (565)
Q Consensus 176 ~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~ 245 (565)
..+|.+++..|. +++.+..+|..|++++-....+.++.|.-|++|||||||++...++++++|+.+++
T Consensus 42 v~wI~ev~~~l~--L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~ 109 (358)
T 2pk2_A 42 ANLLQDMGQRLN--VSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAH 109 (358)
T ss_dssp HHHHHHHHTTTT--CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 457888899998 89999999999999998777788999999999999999999999999999987664
No 36
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=96.16 E-value=0.027 Score=56.20 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=77.6
Q ss_pred hhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCC-CCCHhHHHHHhc--cCHHHHHH
Q 008455 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVH--ICEATLMK 253 (565)
Q Consensus 177 ~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~-~~t~~eIa~v~~--Vse~TIrk 253 (565)
++|...+..+. +++++...|..+++++....-+..+++..|++||+||||++.+. ++++++++.+++ .+...|.+
T Consensus 62 ~wl~~v~~~~~--l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~ 139 (271)
T 2w96_A 62 TWMLEVCEEQK--CEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQ 139 (271)
T ss_dssp HHHHHHHHHTT--CCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHH
T ss_pred HHHHHHHHHHC--CchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHH
Confidence 45666777776 78889999999999987766678899999999999999999988 889999998864 78888888
Q ss_pred HHHHHHccCCCC---CCHHHHHHH
Q 008455 254 RLIEFENTDSGS---LTIEDFMAR 274 (565)
Q Consensus 254 R~kE~~~t~s~~---Lt~~~f~~~ 274 (565)
-...+..+-.=. -|+-.|...
T Consensus 140 mE~~IL~~L~~~l~~~tp~~fl~~ 163 (271)
T 2w96_A 140 MELLLVNKLKWNLAAMTPHDFIEH 163 (271)
T ss_dssp HHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHCCCccCCCCHHHHHHH
Confidence 877777765533 467777654
No 37
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=96.01 E-value=0.04 Score=46.67 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=62.0
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHhCccccC------CchhHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHH
Q 008455 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG------RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 151 (565)
Q Consensus 78 I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rG------R~~~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lg 151 (565)
|+.+|-+||++ .+++.|.+++.+... .+..+ -+....+||++|.+||.++..+.-.-+....+++...+.
T Consensus 6 v~dLcVqfgc~---e~~~~a~~lL~~Yk~-~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~ 81 (95)
T 3m03_A 6 IRDLAVQFSCI---EAVNMASKILKSYES-SLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFD 81 (95)
T ss_dssp HHHHHHHHTCG---GGHHHHHHHHHHHHT-TSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHH
T ss_pred HHHHHHHhCCH---HHHHHHHHHHHHHHH-HhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHH
Confidence 78899999999 588888888777542 22211 224578999999999999999999999999999998888
Q ss_pred HHHHHHHHH
Q 008455 152 AVYLQLCQV 160 (565)
Q Consensus 152 r~~~~L~~~ 160 (565)
+...++-+.
T Consensus 82 ~l~~~~e~~ 90 (95)
T 3m03_A 82 RLCKQLEKI 90 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766554
No 38
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=95.82 E-value=0.032 Score=55.20 Aligned_cols=86 Identities=19% Similarity=0.108 Sum_probs=66.9
Q ss_pred HHHHHHHHHHcCCCChhHH----HHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhc-CCCcc----HHHHHhhhcc
Q 008455 75 FDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFL----LIDFSNYLNI 145 (565)
Q Consensus 75 ~~~I~~ia~~L~Lp~~~~i----~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e-~~p~t----L~DIa~~~~v 145 (565)
...|..+...++++ ... ...|..+...+.-...+-+.++..+||||||+|.+.. +.|.+ ...++.++|+
T Consensus 153 ~~fl~~~~~~~~~~--~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~ 230 (254)
T 2f2c_A 153 TDFLIPLCNALKIP--EDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNF 230 (254)
T ss_dssp GGSHHHHHHHTTCC--GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCC--hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCc
Confidence 45678888899988 443 4456666666554444567889999999999999986 44555 7889999999
Q ss_pred ChHHHHHHHHHHHHHhh
Q 008455 146 NVYELGAVYLQLCQVLY 162 (565)
Q Consensus 146 sv~~Lgr~~~~L~~~L~ 162 (565)
+..+|...++.|.+.+.
T Consensus 231 ~~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 231 STNTVRTVKDQVSEAFS 247 (254)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 39
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=95.59 E-value=0.053 Score=53.63 Aligned_cols=97 Identities=12% Similarity=0.063 Sum_probs=78.4
Q ss_pred hhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCC-CCCHhHHHHHhc--cCHHHHH
Q 008455 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVH--ICEATLM 252 (565)
Q Consensus 176 ~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~-~~t~~eIa~v~~--Vse~TIr 252 (565)
.++|..++..+. +.+++.-.|..+++++.....+.++++.-|++||+||||++... ..++++++.+++ .+...|.
T Consensus 55 vdwl~ev~~~~~--l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~ 132 (257)
T 1g3n_C 55 GTWMFSVCQEYN--LEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELI 132 (257)
T ss_dssp HHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHH
T ss_pred HHHHHHHHHHhC--CCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHH
Confidence 356777788887 89999999999999998777788899999999999999999876 688999998865 6777888
Q ss_pred HHHHHHHccCCC---CCCHHHHHHH
Q 008455 253 KRLIEFENTDSG---SLTIEDFMAR 274 (565)
Q Consensus 253 kR~kE~~~t~s~---~Lt~~~f~~~ 274 (565)
+--..+..+-.= .-|+-.|...
T Consensus 133 ~mE~~iL~~L~~~l~~~tp~~fl~~ 157 (257)
T 1g3n_C 133 DQEKELLEKLAWRTEAVLATDVTSF 157 (257)
T ss_dssp HHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCcCCCCCHHHHHHH
Confidence 777777666443 3467777654
No 40
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=95.53 E-value=0.066 Score=53.90 Aligned_cols=97 Identities=8% Similarity=0.012 Sum_probs=77.4
Q ss_pred hhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhc-cccCCCChhHHHHHHHHHHHHhcCC-CCCHhHHHHHhc--cCHHHH
Q 008455 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRD-WITTGRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVH--ICEATL 251 (565)
Q Consensus 176 ~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~-~l~~GR~P~~IaaAALylAar~~g~-~~t~~eIa~v~~--Vse~TI 251 (565)
.++|...+..+. +.+++.-.|..+++++... ..+.++.+..|++||+||||++.+. ..++++++.+++ .+...|
T Consensus 54 v~wl~~v~~~~~--l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei 131 (283)
T 1w98_B 54 LDWLMEVCEVYK--LHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEI 131 (283)
T ss_dssp HHHHHHHHHHTT--CBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHH
T ss_pred HHHHHHHHHHhC--CCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHH
Confidence 355667777777 8999999999999998765 4578899999999999999999976 678999998774 678888
Q ss_pred HHHHHHHHccCCCC---CCHHHHHHH
Q 008455 252 MKRLIEFENTDSGS---LTIEDFMAR 274 (565)
Q Consensus 252 rkR~kE~~~t~s~~---Lt~~~f~~~ 274 (565)
.+-...+..+-.=. -|+-.|...
T Consensus 132 ~~mE~~IL~~L~~~l~~~tp~~fL~~ 157 (283)
T 1w98_B 132 LTMELMIMKALKWRLSPLTIVSWLNV 157 (283)
T ss_dssp HHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCcCCCCCHHHHHHH
Confidence 88777777665433 467777655
No 41
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=95.08 E-value=0.056 Score=57.29 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC--ccccCCchhHHHHHHHHHHHHhcCCCccHHHHHhhhcc
Q 008455 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145 (565)
Q Consensus 72 ~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~--~~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~~~~v 145 (565)
.-|..+|+.+|.+|+++. ..+.+....+|...+.+ .++++|...+++-+|+|+.||..+..++++||-....-
T Consensus 280 ~LAa~Rl~~LC~~L~~~~-~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr~ 354 (411)
T 4ell_A 280 RLAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 354 (411)
T ss_dssp HHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHh
Confidence 457889999999999872 36777887888887654 68999999999999999999999999999999887643
No 42
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=95.03 E-value=0.0086 Score=47.04 Aligned_cols=47 Identities=15% Similarity=0.449 Sum_probs=37.9
Q ss_pred CCCCCCCCCCceeccCCCceecCcccceeccccccccccccccCCCCccccCccceee
Q 008455 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~~id~~~ef~e~~~G~s~v~G~~v~~~ 59 (565)
++||.|+...++++++.-.+.|..||+||-+. .+|.+++.|..+..+
T Consensus 8 VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~P-----------TGGKA~l~~~i~e~l 54 (66)
T 1qxf_A 8 VKCPDCEHEQVIFDHPSTIVKCIICGRTVAEP-----------TGGKGNIKAEIIEYV 54 (66)
T ss_dssp EECTTTCCEEEEESSCSSCEECSSSCCEEEEC-----------CSSSCEECSEEEECC
T ss_pred EECCCCCCceEEEecCceEEEcccCCCEEeec-----------CCcceeeehhHHhhh
Confidence 37999999999999999999999999999742 346666777666543
No 43
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=94.89 E-value=0.07 Score=55.36 Aligned_cols=75 Identities=12% Similarity=0.210 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC--ccccCCchhHHHHHHHHHHHHhcCCCccHHHHHhhhcc
Q 008455 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145 (565)
Q Consensus 70 ~l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~--~~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~~~~v 145 (565)
.+.-|..+|..+|..|+++. ..+.+.+..+|..++.. .++++|...+++-+|+|+.||..+...++++|-....-
T Consensus 214 vy~La~~Rl~~LC~~L~~~~-~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr~ 290 (347)
T 2r7g_A 214 VYRLAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 290 (347)
T ss_dssp HHHHHHHHHHHHHHHHCTTC-TTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 34457788999999999872 35777888888887753 58899999999999999999999999999999887643
No 44
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.64 E-value=0.012 Score=45.87 Aligned_cols=45 Identities=18% Similarity=0.414 Sum_probs=35.8
Q ss_pred CCCCCCCCCCceeccCCCceecCcccceeccccccccccccccCCCCccccCccce
Q 008455 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVR 57 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~~id~~~ef~e~~~G~s~v~G~~v~ 57 (565)
++||.|+...+++.++.-.+.|..||+||-+. .+|.+++.|..+.
T Consensus 16 VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~P-----------TGGKa~l~~~i~~ 60 (63)
T 3j20_W 16 VKCIDCGNEQIVFSHPATKVRCLICGATLVEP-----------TGGKGIVKAKILE 60 (63)
T ss_dssp EECSSSCCEEEEESSCSSCEECSSSCCEEEEC-----------CSSSCEECSSCEE
T ss_pred EECCCCCCeeEEEecCCeEEEccCcCCEEecC-----------CCCcEEEEEEEEE
Confidence 37999999999999999999999999999742 3455666665543
No 45
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=94.46 E-value=0.014 Score=47.74 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=28.6
Q ss_pred CCCCCCCCCCceeccCCCceecCcccceecc
Q 008455 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee 32 (565)
+.||.|+...++++++.-.+.|..||+||-+
T Consensus 33 VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp EECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred eECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 3799999999999999999999999999864
No 46
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=94.37 E-value=0.1 Score=58.40 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC--ccccCCchhHHHHHHHHHHHHhcCCCccHHHHHhhhcc
Q 008455 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145 (565)
Q Consensus 71 l~~a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~--~~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~~~~v 145 (565)
+.-|..+|..+|..|+++. ..+.+.+..+|..++.. .++++|...+++-+|+|..||..+..+++++|-....-
T Consensus 524 y~LAa~Rl~~LC~~L~~~~-~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr~ 599 (656)
T 4elj_A 524 YRLAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 599 (656)
T ss_dssp HHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHHh
Confidence 3457899999999998773 46788888888887754 57899999999999999999999999999999886543
No 47
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=94.12 E-value=0.017 Score=47.22 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=28.7
Q ss_pred CCCCCCCCCCceeccCCCceecCcccceecc
Q 008455 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee 32 (565)
+.||.|+...+++.++.-.+.|..||+||-+
T Consensus 35 VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCPGCLNITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp EECTTSCSCEEEESBCSSCCCCSSSCCCCEE
T ss_pred EECCCCCCeeEEEecCCeEEEccccCCEEec
Confidence 3799999999999999999999999999874
No 48
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=94.06 E-value=0.17 Score=51.52 Aligned_cols=89 Identities=11% Similarity=-0.015 Sum_probs=64.9
Q ss_pred HHHHHHHHHHcCCCCh--hHHHHHHHHHHHHHHhCccccCCchhHHHHHHHHHHHHhcCCCc-c----HHHHHhhhccCh
Q 008455 75 FDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF-L----LIDFSNYLNINV 147 (565)
Q Consensus 75 ~~~I~~ia~~L~Lp~~--~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~e~~p~-t----L~DIa~~~~vsv 147 (565)
+..|..+...++++.. ..+...|..|....+-...+-+.++..+||||||+|++..+... . ...++.++|++.
T Consensus 172 ~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~ 251 (306)
T 3g33_B 172 HDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEV 251 (306)
T ss_dssp GGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCH
Confidence 4567778888887721 12445666666665544444578899999999999999876432 2 367788899999
Q ss_pred HHHHHHHHHHHHHhhc
Q 008455 148 YELGAVYLQLCQVLYI 163 (565)
Q Consensus 148 ~~Lgr~~~~L~~~L~i 163 (565)
..|...+..|...+.-
T Consensus 252 ~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 252 DCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 49
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=93.76 E-value=0.18 Score=51.51 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHHhC-c---cccCCchhHHHHHHHHHHHHh-cCCCccHHHHHhhhccChHHHH
Q 008455 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVAR-N---FTKGRRTEQVQASCLYLACRQ-KSKPFLLIDFSNYLNINVYELG 151 (565)
Q Consensus 77 ~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~-~---~~rGR~~~~vaAACLYiACR~-e~~p~tL~DIa~~~~vsv~~Lg 151 (565)
....+|..|+|+ +.+.+.|..+|+.+... + .+-|.. .....||||+||.. ++..++|-.|-..+++++.++-
T Consensus 5 rF~~lC~~Lnld--~~~~~~Aw~~~~~~~~~~~~~~~~~~~~-~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff 81 (304)
T 2qdj_A 5 DFTALCQKLKIP--DHVRERAWLTWEKVSSVDGVLGGYIQKK-KELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFF 81 (304)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHHHHC----------CH-HHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhccccccCCCccch-HHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHHH
Confidence 456799999999 99999999999998774 2 344443 44555669999974 6778999999999999987764
Q ss_pred H
Q 008455 152 A 152 (565)
Q Consensus 152 r 152 (565)
+
T Consensus 82 ~ 82 (304)
T 2qdj_A 82 N 82 (304)
T ss_dssp H
T ss_pred H
Confidence 4
No 50
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.65 E-value=0.02 Score=47.25 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=28.7
Q ss_pred CCCCCCCCCCceeccCCCceecCcccceecc
Q 008455 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee 32 (565)
+.||.|+...+++.++.-.+.|..||+||-+
T Consensus 37 VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 37 VKCQGCFNITTVFSHSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EECTTTCCEEEEETTCSSCCCCSSSCCCCSC
T ss_pred EECCCCCCeeEEEecCCcEEEccCCCCEeec
Confidence 4799999999999999999999999999975
No 51
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=93.14 E-value=0.052 Score=43.30 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=23.9
Q ss_pred CCCCCCCCCCceeccCCCceecCcccceec
Q 008455 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vle 31 (565)
..||.|++. +.++...|.++|..||.+..
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 9 LACPICKGP-LKLSADKTELISKGAGLAYP 37 (69)
T ss_dssp CCCTTTCCC-CEECTTSSEEEETTTTEEEE
T ss_pred eeCCCCCCc-CeEeCCCCEEEcCCCCcEec
Confidence 479999986 55677789999999998753
No 52
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=93.07 E-value=0.036 Score=45.81 Aligned_cols=32 Identities=16% Similarity=0.412 Sum_probs=27.1
Q ss_pred CCCCCCCCCceeccCCCceecCcccceeccccc
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~~i 35 (565)
.||.||+. .+.++..|.+.|..||.+.....+
T Consensus 29 ~Cp~CG~~-~v~r~atGiW~C~~Cg~~~aggay 60 (83)
T 1vq8_Z 29 ACPNCGED-RVDRQGTGIWQCSYCDYKFTGGSY 60 (83)
T ss_dssp ECSSSCCE-EEEEEETTEEEETTTCCEEECCSS
T ss_pred cCCCCCCc-ceeccCCCeEECCCCCCEecCCEe
Confidence 59999975 678999999999999998776544
No 53
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=92.87 E-value=0.055 Score=43.28 Aligned_cols=28 Identities=14% Similarity=0.401 Sum_probs=23.7
Q ss_pred CCCCCCCCCCceeccCCCceecCccccee
Q 008455 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vl 30 (565)
..||.|++. +.++...|.++|..||.+.
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGR-LEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CBCTTTCCB-EEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCc-CEEeCCCCEEEcCCCCcee
Confidence 479999985 5677778999999999875
No 54
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=92.83 E-value=0.052 Score=43.18 Aligned_cols=29 Identities=7% Similarity=0.068 Sum_probs=24.0
Q ss_pred CCCCCCCCCCceeccCCCceecCcccceec
Q 008455 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vle 31 (565)
..||.|++. +.++...|.++|..||.+..
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 9 LVCPVTKGR-LEYHQDKQELWSRQAKLAYP 37 (68)
T ss_dssp CBCSSSCCB-CEEETTTTEEEETTTTEEEE
T ss_pred eECCCCCCc-CeEeCCCCEEEcCCCCcEec
Confidence 479999986 56777789999999998753
No 55
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=92.49 E-value=0.068 Score=42.39 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=23.8
Q ss_pred CCCCCCCCCCceeccCCCceecCccccee
Q 008455 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vl 30 (565)
..||.|++. +.++...|.++|..||.+.
T Consensus 11 L~CP~ck~~-L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 11 LACPKDKGP-LRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CBCTTTCCB-CEEETTTTEEEETTTTEEE
T ss_pred hCCCCCCCc-CeEeCCCCEEEcCCCCccc
Confidence 379999985 6677788999999999875
No 56
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=92.41 E-value=0.062 Score=42.73 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=23.9
Q ss_pred CCCCCCCCCCceeccCCCceecCcccceec
Q 008455 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vle 31 (565)
..||.|++. +.++...|.++|..||.+..
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 9 LVCPLCKGP-LVFDKSKDELICKGDRLAFP 37 (68)
T ss_dssp CBCTTTCCB-CEEETTTTEEEETTTTEEEE
T ss_pred eECCCCCCc-CeEeCCCCEEEcCCCCcEec
Confidence 379999986 56777789999999998753
No 57
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.95 E-value=0.086 Score=39.34 Aligned_cols=27 Identities=22% Similarity=0.617 Sum_probs=21.7
Q ss_pred CCCCCCCCCceeccCCCceecCccccee
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vl 30 (565)
.||.||+..+..++ .+..+|..||.+.
T Consensus 21 ~CP~CG~~~fm~~~-~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 21 FCPRCGPGVFMADH-GDRWACGKCGYTE 47 (50)
T ss_dssp ECSSSCSSCEEEEC-SSEEECSSSCCEE
T ss_pred cCCCCCCceEEecC-CCeEECCCCCCEE
Confidence 69999998665544 5889999999873
No 58
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=90.99 E-value=0.12 Score=39.29 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCceeccCCCceecCcccce
Q 008455 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKV 29 (565)
Q Consensus 1 M~~Cp~Cgs~~i~~D~~~G~~VCt~CG~V 29 (565)
|..||.||+..+.. ...+...|..||..
T Consensus 18 ~~fCPkCG~~~~ma-~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGVFLA-EHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTCCCE-ECSSEEECTTTCCC
T ss_pred cccCcCCCCceeEe-ccCCEEECCCCCCE
Confidence 45799999875533 34579999999997
No 59
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=90.60 E-value=1.2 Score=37.64 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=53.7
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhhcc------ccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHH
Q 008455 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDW------ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 252 (565)
Q Consensus 179 I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~------l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIr 252 (565)
|.-+|-.|+ -.+++..|.+|++..+..- =..-.+|. .++||+|.||+.+..+++...+...+|+++.-..
T Consensus 6 v~dLcVqfg---c~e~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~-f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~ 81 (95)
T 3m03_A 6 IRDLAVQFS---CIEAVNMASKILKSYESSLPQTQQVDLDLSRPL-FTSAALLSACKILKLKVDKNKMVATSGVKKAIFD 81 (95)
T ss_dssp HHHHHHHHT---CGGGHHHHHHHHHHHHTTSCHHHHHHCCTTSHH-HHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHH
T ss_pred HHHHHHHhC---CHHHHHHHHHHHHHHHHHhHHHhhccccccccH-HHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHH
Confidence 445666665 2347777777777765321 11335676 5568999999999999999999999999887666
Q ss_pred HHHHHHH
Q 008455 253 KRLIEFE 259 (565)
Q Consensus 253 kR~kE~~ 259 (565)
+-...+.
T Consensus 82 ~l~~~~e 88 (95)
T 3m03_A 82 RLCKQLE 88 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 60
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=88.02 E-value=1.8 Score=48.43 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHHhCc----cccCCchhHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHH
Q 008455 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVARN----FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 152 (565)
Q Consensus 77 ~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~----~~rGR~~~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr 152 (565)
....+|..|+|+ +.+.+.|.+.|......+ .+--....++.|+.+|.||+.+|..++|-.|-...++|+.++=+
T Consensus 7 ~f~~lC~~Ln~d--~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~~lsl~~FF~ 84 (656)
T 4elj_A 7 DFTALCQKLKIP--DHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFFN 84 (656)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHHHHHHHHHTTCCCSCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHHHHhccccccCCcccchHHhhhhhheeeeeccCCeeeHHHHHHHhcCCHHHHHH
Confidence 467799999999 999999999999988422 11122456777777788888899999999999999998877533
No 61
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=87.67 E-value=9.7 Score=31.57 Aligned_cols=100 Identities=11% Similarity=0.157 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHHH
Q 008455 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197 (565)
Q Consensus 118 vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~~ 197 (565)
+..++-||.-.. ..++++.++|+.++++...|.+.|++. +| +.|..||.+.- | ..
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~---~G----------~s~~~~~~~~R--l---------~~ 58 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRS---RG----------YSPMAFAKRVR--L---------QH 58 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHH---TS----------SCHHHHHHHHH--H---------HH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHH---hC----------cCHHHHHHHHH--H---------HH
Confidence 444555665544 447999999999999999999887744 33 34566665431 1 11
Q ss_pred HHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCC-CCCHhHHHHHhccC-HHHHHHHHHHHHccCCCCCCHHHHHHH
Q 008455 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMAR 274 (565)
Q Consensus 198 A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~-~~t~~eIa~v~~Vs-e~TIrkR~kE~~~t~s~~Lt~~~f~~~ 274 (565)
|.+++ ..+. ..++.+||..+|.+ .....+.++.+. .+||.+|++.
T Consensus 59 A~~lL---------------------------~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yr~~ 105 (108)
T 3mn2_A 59 AHNLL---------------------------SDGATPTTVTAAALSCGFSNLGHFARDYRDMF-----GEKPSETLQR 105 (108)
T ss_dssp HHHHH---------------------------HSSSSCCCHHHHHHHTTCCCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred HHHHH---------------------------HcCCCCCCHHHHHHHhCCCCHHHHHHHHHHHH-----CcChHHHHHh
Confidence 22211 1111 26888899999975 568888888877 6778888764
No 62
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=86.62 E-value=8.5 Score=31.98 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHH
Q 008455 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 196 (565)
Q Consensus 117 ~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~ 196 (565)
.+..+.-||--.... ++++.++|+.++++...|.+.|++. +| ..|..||.+.-
T Consensus 6 ~i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~---~G----------~s~~~~~~~~R------------- 58 (108)
T 3oou_A 6 IIQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKE---MG----------EHFTDYLNRYR------------- 58 (108)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHH---HS----------SCHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHHH-------------
Confidence 345556666665544 8899999999999999999887754 34 34555654320
Q ss_pred HHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhcc-CHHHHHHHHHHHHccCCCCCCHHHHHHH
Q 008455 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI-CEATLMKRLIEFENTDSGSLTIEDFMAR 274 (565)
Q Consensus 197 ~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~V-se~TIrkR~kE~~~t~s~~Lt~~~f~~~ 274 (565)
+--|.-+|. .-..++.+||..+|. +.....+.++... -+||.+|++.
T Consensus 59 ----------------------l~~A~~lL~----~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yR~~ 106 (108)
T 3oou_A 59 ----------------------VNYAKEELL----QTKDNLTIIAGKSGYTDMAYFYRQFKKHT-----GETPNRYRKI 106 (108)
T ss_dssp ----------------------HHHHHHHHH----HCCCCHHHHHHHTTCCCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred ----------------------HHHHHHHHH----cCCCCHHHHHHHcCCCChHHHHHHHHHHh-----CcCHHHHHHH
Confidence 111222221 134578888888887 5577888888777 6677787754
No 63
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=86.45 E-value=0.44 Score=38.64 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=27.7
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
|.+.|++|||+.+|||..||++-|+.|.+.
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~k 51 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDV 51 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 789999999999999999999999988743
No 64
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=86.17 E-value=0.35 Score=33.90 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=24.6
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
..|.++||+.++|+..||.+.++.+...
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~~~~~~~~ 48 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKDPVSY 48 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCSTTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhhHHhc
Confidence 4689999999999999999999877643
No 65
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=85.03 E-value=11 Score=38.01 Aligned_cols=105 Identities=6% Similarity=-0.002 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC--ccc-cCCchhHHHHHHHHHHHHh-cCCCccHHHHHhhhccChHH
Q 008455 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFT-KGRRTEQVQASCLYLACRQ-KSKPFLLIDFSNYLNINVYE 149 (565)
Q Consensus 74 a~~~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~--~~~-rGR~~~~vaAACLYiACR~-e~~p~tL~DIa~~~~vsv~~ 149 (565)
..++|.+|...-+++ ..+.-.|..|+.++... ++. .......+..+||-+|.+. .....+-..+|.+.|+++.+
T Consensus 77 I~~Yl~RI~k~t~ls--~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~E 154 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLE--HCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHE 154 (293)
T ss_dssp HHHHHHHHHHTTTCC--HHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHH
Confidence 356788888888999 88888888887777653 333 2345666888899999985 57788889999999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCchhhHHHHHHhh
Q 008455 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186 (565)
Q Consensus 150 Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L 186 (565)
|...-+.++..|+.+.. ++++.|...+...+
T Consensus 155 LN~LE~eFL~lLdf~L~------V~~ee~~~cy~E~~ 185 (293)
T 2pmi_B 155 LNILENDFLKRVNYRII------PRDHNITLCSIEQK 185 (293)
T ss_dssp HHHHHHHHHHTTTTCCS------CCTTHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCcee------eCHHHHHHHHHHHh
Confidence 99999999999998764 67788876555544
No 66
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=84.18 E-value=16 Score=29.91 Aligned_cols=98 Identities=11% Similarity=0.124 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHHH
Q 008455 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197 (565)
Q Consensus 118 vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~~ 197 (565)
+..+.-||--.....++++.++|+.++++...|.+.|++. +| +.|..||.+.- ...
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~---~g----------~s~~~~~~~~R-----------l~~ 59 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN---FG----------IPFQDYLLQKR-----------MEK 59 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH---HS----------SCHHHHHHHHH-----------HHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHHH-----------HHH
Confidence 3344556665555558999999999999999999877754 33 34556655320 011
Q ss_pred HHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhcc-CHHHHHHHHHHHHccCCCCCCHHHHH
Q 008455 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI-CEATLMKRLIEFENTDSGSLTIEDFM 272 (565)
Q Consensus 198 A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~V-se~TIrkR~kE~~~t~s~~Lt~~~f~ 272 (565)
|. -+|. .-..++.+||..+|. +.....+.++... .+||.+|+
T Consensus 60 A~------------------------~lL~----~~~~si~~iA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yR 102 (103)
T 3lsg_A 60 AK------------------------LLLL----TTELKNYEIAEQVGFEDVNYFITKFKKYY-----QITPKQYR 102 (103)
T ss_dssp HH------------------------HHHH----HCCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHT
T ss_pred HH------------------------HHHH----CCCCCHHHHHHHhCCCCHHHHHHHHHHHH-----CcCHHHHh
Confidence 21 1221 124677888888887 5577888887776 55666664
No 67
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=84.13 E-value=0.46 Score=36.06 Aligned_cols=31 Identities=16% Similarity=0.453 Sum_probs=21.8
Q ss_pred CCCCCCCCCCceecc---------CCCceecCcccceecc
Q 008455 2 VWCSSCARHVTGHRP---------YDSQLCCDRCGKVLED 32 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~---------~~G~~VCt~CG~Vlee 32 (565)
..||.||.....+.. .+-.++|..||..-.+
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 479999998654431 1236899999987554
No 68
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=82.10 E-value=0.87 Score=39.54 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCceecc---CCCceecCcccceec
Q 008455 1 MVWCSSCARHVTGHRP---YDSQLCCDRCGKVLE 31 (565)
Q Consensus 1 M~~Cp~Cgs~~i~~D~---~~G~~VCt~CG~Vle 31 (565)
|..||.||+-...... ....++|..||++..
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 6689999987443321 122699999999764
No 69
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=81.66 E-value=0.78 Score=40.70 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=21.3
Q ss_pred CCCCCCCCCceeccCCCceecCcccceec
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vle 31 (565)
.||.|++.-.-.| ...+||.+||.--.
T Consensus 29 ~CP~C~seytYeD--g~l~vCPeC~hEW~ 55 (138)
T 2akl_A 29 PCPQCNSEYTYED--GALLVCPECAHEWS 55 (138)
T ss_dssp CCTTTCCCCCEEC--SSSEEETTTTEEEC
T ss_pred CCCCCCCcceEec--CCeEECCccccccC
Confidence 6999999855443 56899999998763
No 70
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=78.98 E-value=0.88 Score=44.64 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=20.3
Q ss_pred CCCCCCCC-CceeccCCCceecCcccce
Q 008455 3 WCSSCARH-VTGHRPYDSQLCCDRCGKV 29 (565)
Q Consensus 3 ~Cp~Cgs~-~i~~D~~~G~~VCt~CG~V 29 (565)
.||.||++ ...++ .+|...|.+||.-
T Consensus 16 ~CP~Cg~~d~~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 16 PCDNCGSSDGNSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp CCSSSCCSSCEEEE-TTSCEEETTTCCE
T ss_pred cCCCCCCCCCceEe-CCCCeecccCCCc
Confidence 69999985 44444 3688999999975
No 71
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=78.62 E-value=0.59 Score=36.12 Aligned_cols=35 Identities=20% Similarity=0.466 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCceeccCCCceecCcccceeccccccccccccccC
Q 008455 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA 45 (565)
Q Consensus 1 M~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~~id~~~ef~e~~ 45 (565)
|..|+.||...+ .-+|..||.... +.+-+-|+-++
T Consensus 6 mr~C~~CgvYTL-------k~~CP~CG~~T~---~~hParfSp~D 40 (60)
T 2apo_B 6 MKKCPKCGLYTL-------KEICPKCGEKTV---IPKPPKFSLED 40 (60)
T ss_dssp CEECTTTCCEES-------SSBCSSSCSBCB---CCCCCCCCTTC
T ss_pred ceeCCCCCCEec-------cccCcCCCCcCC---CCCCCCCCCCc
Confidence 457999998644 448999998754 33444565443
No 72
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=78.50 E-value=0.75 Score=31.79 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=20.4
Q ss_pred CCCCCCCCCCcee--ccCCCceecCccccee
Q 008455 2 VWCSSCARHVTGH--RPYDSQLCCDRCGKVL 30 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~--D~~~G~~VCt~CG~Vl 30 (565)
+.||.|++.+..+ +...-.+.|..||..-
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 5799999985433 3333467799999863
No 73
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=78.28 E-value=0.7 Score=33.93 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=21.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
...|+++||+.+|||..||++.++
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346999999999999999999874
No 74
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=77.60 E-value=0.84 Score=40.19 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCc-eec--cCCCceecCcccceec
Q 008455 1 MVWCSSCARHVT-GHR--PYDSQLCCDRCGKVLE 31 (565)
Q Consensus 1 M~~Cp~Cgs~~i-~~D--~~~G~~VCt~CG~Vle 31 (565)
|..||.||.-.. ..| ...+.++|..||+...
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 458999997633 233 3356899999999765
No 75
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=77.54 E-value=1.2 Score=35.62 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=25.7
Q ss_pred CCCCCCCCCceeccCCCceecCcccceeccccc
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~~i 35 (565)
.||.||...+ .....|-.-|..||.++.....
T Consensus 28 ~C~fCgk~~v-kR~a~GIW~C~~C~~~~AGGAy 59 (72)
T 3jyw_9 28 DCSFCGKKTV-KRGAAGIWTCSCCKKTVAGGAY 59 (72)
T ss_dssp CCSSCCSSCB-SBCSSSCBCCSSSCCCCCCSSS
T ss_pred cCCCCCCcee-EecCCCeEECCCCCCEEeCCcc
Confidence 6999998864 4467899999999998875544
No 76
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=76.97 E-value=13 Score=36.43 Aligned_cols=97 Identities=10% Similarity=0.081 Sum_probs=67.0
Q ss_pred hhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCC-CCCHhHHHHHhc--cCHHHHH
Q 008455 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVH--ICEATLM 252 (565)
Q Consensus 176 ~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~-~~t~~eIa~v~~--Vse~TIr 252 (565)
.++|..++..+. +.+++.-.|..++++.....-+......-|+.+|++||+.+... +.+..+++..++ .+...|.
T Consensus 53 vdWl~ev~~~~~--l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~ 130 (252)
T 1f5q_B 53 TTWMFCVCKDLR--QDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLL 130 (252)
T ss_dssp HHHHHHHHHHTT--CCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHcC--CChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHH
Confidence 356777788877 88999999999999987655566678899999999999998865 457788776653 3445555
Q ss_pred HHHHHHHccCC---CCCCHHHHHHH
Q 008455 253 KRLIEFENTDS---GSLTIEDFMAR 274 (565)
Q Consensus 253 kR~kE~~~t~s---~~Lt~~~f~~~ 274 (565)
+-=..+..+-. +.-|+-.|...
T Consensus 131 ~mE~~IL~~L~w~l~~pTp~~FL~~ 155 (252)
T 1f5q_B 131 TLEVKSLDTLSWVADRCLSTDLICY 155 (252)
T ss_dssp HHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCHHHHHHH
Confidence 44444444433 23355555443
No 77
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=76.97 E-value=1.1 Score=36.74 Aligned_cols=32 Identities=22% Similarity=0.618 Sum_probs=26.1
Q ss_pred CCCCCCCCCceeccCCCceecCcccceeccccc
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~~i 35 (565)
.||.||+..+ .....|-..|..||.++.....
T Consensus 37 ~CpfCGk~~v-kR~a~GIW~C~kCg~~~AGGAy 68 (83)
T 3j21_i 37 TCPVCGRKAV-KRISTGIWQCQKCGATFAGGAY 68 (83)
T ss_dssp CCSSSCSSCE-EEEETTEEEETTTCCEEECCSS
T ss_pred CCCCCCCcee-EecCcCeEEcCCCCCEEeCCcc
Confidence 6999999864 4467899999999999876554
No 78
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=76.54 E-value=2.9 Score=33.88 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHHhhcccc
Q 008455 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166 (565)
Q Consensus 122 CLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~~~ 166 (565)
-|+-+.+..|.|....||+..+|++.++|.+++..|.+.-.|..|
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCC
Confidence 356678899999999999999999999999999999998777543
No 79
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=75.78 E-value=1.3 Score=37.01 Aligned_cols=32 Identities=25% Similarity=0.630 Sum_probs=25.5
Q ss_pred CCCCCCCCCceeccCCCceecCcccceeccccc
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~~i 35 (565)
.||.||...+ .....|-..|..||.++.....
T Consensus 38 ~CpfCgk~~v-kR~a~GIW~C~~Cg~~~AGGAy 69 (92)
T 3iz5_m 38 FCEFCGKFAV-KRKAVGIWGCKDCGKVKAGGAY 69 (92)
T ss_dssp CCTTTCSSCB-EEEETTEEECSSSCCEEECCSS
T ss_pred cCcccCCCee-EecCcceEEcCCCCCEEeCCcc
Confidence 6999999864 4457899999999998875443
No 80
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=75.57 E-value=1.2 Score=37.68 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=11.5
Q ss_pred CCceecCccccee
Q 008455 18 DSQLCCDRCGKVL 30 (565)
Q Consensus 18 ~G~~VCt~CG~Vl 30 (565)
.|.+||..||...
T Consensus 51 ~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 51 HEALITRDRKQVF 63 (97)
T ss_dssp SEEEECTTSCEEE
T ss_pred CCeEEcCCCCCCc
Confidence 6899999999874
No 81
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=75.54 E-value=1.3 Score=37.02 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=25.3
Q ss_pred CCCCCCCCCceeccCCCceecCcccceeccccc
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~~i 35 (565)
.||.||...+ .....|-..|..||.++.....
T Consensus 38 ~CpfCgk~~v-kR~a~GIW~C~~C~~~~AGGAy 69 (92)
T 3izc_m 38 DCSFCGKKTV-KRGAAGIWTCSCCKKTVAGGAY 69 (92)
T ss_dssp CCSSSCSSCC-EEEETTEEECTTTCCEEECCSS
T ss_pred cCCCCCCcee-eecccceEEcCCCCCEEeCCcc
Confidence 6999998864 4456899999999998875443
No 82
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=75.54 E-value=3 Score=37.85 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=30.6
Q ss_pred HHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCC
Q 008455 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDS 263 (565)
Q Consensus 228 ar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s 263 (565)
....+.+.|..+||+.+|+|+.|+++|++.+.+..-
T Consensus 11 ~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 11 ILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 334566889999999999999999999999986653
No 83
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=75.36 E-value=13 Score=37.70 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=60.2
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhhh-cccc--CCCChhHHHHHHHHHHHH-hcCCCCCHhHHHHHhccCHHHHHHHH
Q 008455 180 HKFTDRLLPGGNKKVCDTARDILASMKR-DWIT--TGRKPSGLCGAALYVSAL-THGLKFSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 180 ~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~-~~l~--~GR~P~~IaaAALylAar-~~g~~~t~~eIa~v~~Vse~TIrkR~ 255 (565)
..+|..|. ++..+...|+++.+.+.. +.+. +--...-..+||||+|+. +.|..+|+.+|-+.++++-...-+++
T Consensus 7 ~~lC~~Ln--ld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff~k~ 84 (304)
T 2qdj_A 7 TALCQKLK--IPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFFNLL 84 (304)
T ss_dssp HHHHHHTT--CCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHHHHHH
Confidence 34688888 899999999999999887 2321 112355566777999995 44666899999999988877666665
Q ss_pred HHHHccCCCCCCHHHHHHHH
Q 008455 256 IEFENTDSGSLTIEDFMARK 275 (565)
Q Consensus 256 kE~~~t~s~~Lt~~~f~~~~ 275 (565)
+.. + ...+|...-
T Consensus 85 ~~~-----d--~~~~~~~~i 97 (304)
T 2qdj_A 85 KEI-----D--TSTKVDNAM 97 (304)
T ss_dssp TTS-----C--CCHHHHHHH
T ss_pred HHc-----C--CCHHHHHHH
Confidence 552 1 556676553
No 84
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=75.05 E-value=1.1 Score=35.97 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=25.2
Q ss_pred CCCCCCCCCceeccCCCceecCcccceeccccc
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~~i 35 (565)
.||.||...+ .....|-..|..||.++.-...
T Consensus 29 ~C~fCgk~~v-kR~a~GIW~C~~C~~~~AGGAy 60 (73)
T 1ffk_W 29 KCPVCGFPKL-KRASTSIWVCGHCGYKIAGGAY 60 (73)
T ss_pred cCCCCCCcee-EEEEeEEEECCCCCcEEECCCc
Confidence 6999998754 3456899999999999876544
No 85
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=75.04 E-value=16 Score=37.73 Aligned_cols=127 Identities=14% Similarity=0.161 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHhc----------CCCccHHHHHhhhccChHHHHHHHHHHHHHhh-c---------------------
Q 008455 116 EQVQASCLYLACRQK----------SKPFLLIDFSNYLNINVYELGAVYLQLCQVLY-I--------------------- 163 (565)
Q Consensus 116 ~~vaAACLYiACR~e----------~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~-i--------------------- 163 (565)
..+.|+|+=++...+ ...+++--|-++++++.+++.++.--+++.-. +
T Consensus 105 ~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afdf~KVIE~fVr~e~~LprelvkHL~~iEe~iLeslaW 184 (347)
T 2r7g_A 105 MSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAW 184 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCCcHHHHhcCCChHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHh
Confidence 568888888776543 23677778999999999999998777666411 0
Q ss_pred ccc-ccc--cccCCc--------hhh-----------HHHHHHhhCCCCCHHHHHHHHHHHHHhh--hccccCCCChhHH
Q 008455 164 ADE-SNV--LKQVDP--------SIF-----------LHKFTDRLLPGGNKKVCDTARDILASMK--RDWITTGRKPSGL 219 (565)
Q Consensus 164 ~~~-~~~--~~~vdP--------~~~-----------I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~--~~~l~~GR~P~~I 219 (565)
... |.+ +....+ ..| |..+|..|.. ..+++....+.+++.+. ...+..+|+-.-|
T Consensus 185 ~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~-~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQi 263 (347)
T 2r7g_A 185 LSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLS-EHPELEHIIWTLFQHTLQNEYELMRDRHLDQI 263 (347)
T ss_dssp STTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHH
T ss_pred ccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHHhChHhhcCCcHHHH
Confidence 000 000 000001 112 3344666641 23356666777777654 3578899999999
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHH
Q 008455 220 CGAALYVSALTHGLKFSKSDIVKI 243 (565)
Q Consensus 220 aaAALylAar~~g~~~t~~eIa~v 243 (565)
.-.|+|+.|+.++..+|.++|...
T Consensus 264 ilCaiY~i~Kv~~~~~tF~~Ii~~ 287 (347)
T 2r7g_A 264 MMCSMYGICKVKNIDLKFKIIVTA 287 (347)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999999988888888763
No 86
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=75.02 E-value=23 Score=29.88 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHH
Q 008455 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 196 (565)
Q Consensus 117 ~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~ 196 (565)
.+..++-||--.. ..++++.++|..++++...|.+.|++ . |. .|..||.+.- | .
T Consensus 8 ~~~~~~~~i~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~---~-G~----------s~~~~~~~~R--l---------~ 61 (120)
T 3mkl_A 8 MRTRVCTVINNNI-AHEWTLARIASELLMSPSLLKKKLRE---E-ET----------SYSQLLTECR--M---------Q 61 (120)
T ss_dssp HHHHHHHHHHTST-TSCCCHHHHHHHTTCCHHHHHHHHHH---T-TC----------CHHHHHHHHH--H---------H
T ss_pred HHHHHHHHHHHhc-cCCCCHHHHHHHHCcCHHHHHHHHHH---c-CC----------CHHHHHHHHH--H---------H
Confidence 3444555554333 33789999999999999998887753 2 43 3555554320 0 1
Q ss_pred HHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccC-HHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 008455 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMARK 275 (565)
Q Consensus 197 ~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vs-e~TIrkR~kE~~~t~s~~Lt~~~f~~~~ 275 (565)
.| .-+| ..-..++.+||..+|.+ .....+.++.+. .+||.+|++.-
T Consensus 62 ~A------------------------~~lL----~~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yr~~~ 108 (120)
T 3mkl_A 62 RA------------------------LQLI----VIHGFSIKRVAVSCGYHSVSYFIYVFRNYY-----GMTPTEYQERS 108 (120)
T ss_dssp HH------------------------HHHH----TSTTCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHHHC
T ss_pred HH------------------------HHHH----HcCCCCHHHHHHHHCCCCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 11 1111 12356888999999975 578888888887 67889998764
No 87
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=74.92 E-value=1.5 Score=39.17 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCcee-cc--CCCceecCcccceec
Q 008455 1 MVWCSSCARHVTGH-RP--YDSQLCCDRCGKVLE 31 (565)
Q Consensus 1 M~~Cp~Cgs~~i~~-D~--~~G~~VCt~CG~Vle 31 (565)
|..||.||+-.... |. ....++|..||++.+
T Consensus 24 ~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 24 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 57 (133)
T ss_dssp CCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCC
T ss_pred CeeCCCCCCEeeECccCCCceeEEECCCCCCcEE
Confidence 56899999864333 22 123699999999753
No 88
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=74.75 E-value=7.9 Score=37.04 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHhhhccccCC---CChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 190 GNKKVCDTARDILASMKRDWITTG---RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 190 l~~~V~~~A~~Lv~~m~~~~l~~G---R~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
+++.|...|..|++.+.--.--.| -+|..+||||+.+|+.-.+.+++..|+-- ..-+-..|.-|.-||.
T Consensus 28 ~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~-lD~sL~Dvelrr~Eiv 99 (260)
T 3h4c_A 28 LPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRC-LDSSLGDVELRRADIV 99 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHH-HCTTCCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHH-HhhhhhHHHHHHHHHH
Confidence 789999999999988642222223 57999999999999999999999988632 3333335666666664
No 89
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=73.75 E-value=25 Score=29.27 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHH
Q 008455 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 196 (565)
Q Consensus 117 ~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~ 196 (565)
.+..++-||--. ...++++.++|+.++++...|.+.|++. +| ..|..||.++- ..
T Consensus 8 ~i~~~~~~i~~~-~~~~~~~~~lA~~~~~S~~~l~r~fk~~---~G----------~s~~~~~~~~R-----------l~ 62 (113)
T 3oio_A 8 KLTEAVSLMEAN-IEEPLSTDDIAYYVGVSRRQLERLFKQY---LG----------TVPSKYYLELR-----------LN 62 (113)
T ss_dssp HHHHHHHHHHTC-SSSCCCHHHHHHHHTSCHHHHHHHHHHH---TS----------SCHHHHHHHHH-----------HH
T ss_pred HHHHHHHHHHhh-hcCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHHH-----------HH
Confidence 344455555322 2456999999999999999999877754 33 34556655331 01
Q ss_pred HHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccC-HHHHHHHHHHHHccCCCCCCHHHHHHH
Q 008455 197 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMAR 274 (565)
Q Consensus 197 ~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vs-e~TIrkR~kE~~~t~s~~Lt~~~f~~~ 274 (565)
. |.-+|. .-..++.+||..+|.+ .....+.++.+. -+||.+|++.
T Consensus 63 ~------------------------A~~lL~----~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yR~~ 108 (113)
T 3oio_A 63 R------------------------ARQLLQ----QTSKSIVQIGLACGFSSGPHFSSTYRNHF-----NITPREERAQ 108 (113)
T ss_dssp H------------------------HHHHHH----HCCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHHT
T ss_pred H------------------------HHHHHH----cCCCCHHHHHHHHCCCCHHHHHHHHHHHH-----CcCHHHHHHh
Confidence 1 222221 1256888999999975 468888888887 6788888764
No 90
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=73.69 E-value=1.2 Score=38.81 Aligned_cols=32 Identities=16% Similarity=0.427 Sum_probs=25.1
Q ss_pred CCCCCCCCCceeccCCCceecCcccceeccccc
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~~i 35 (565)
.||.||...+ .....|-..|..||.++.-...
T Consensus 62 tCPfCGk~~v-KR~avGIW~C~~Cgk~fAGGAy 93 (116)
T 3cc2_Z 62 ACPNCGEDRV-DRQGTGIWQCSYCDYKFTGGSY 93 (116)
T ss_dssp ECSSSCCEEE-EEEETTEEEETTTCCEEECCSS
T ss_pred cCCCCCCcee-EecCceeEECCCCCCEEECCCc
Confidence 5999998643 4456899999999999775543
No 91
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=73.45 E-value=6.3 Score=38.12 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHHh
Q 008455 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL 161 (565)
Q Consensus 116 ~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L 161 (565)
..++=|.||++ +.|+++.+++.+++++...+..+...|...+
T Consensus 17 ~~~iEAlLf~a----~epvs~~~La~~l~~~~~~v~~~l~~L~~~y 58 (219)
T 2z99_A 17 KRVLEALLLVI----DTPVTADALAAATEQPVYRVAAKLQLMADEL 58 (219)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 35666888876 8899999999999999999999999998877
No 92
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=73.19 E-value=0.96 Score=36.04 Aligned_cols=27 Identities=22% Similarity=0.685 Sum_probs=17.8
Q ss_pred CCCCCCCCCceeccCCCceecCcccc-eec
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGK-VLE 31 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~-Vle 31 (565)
.|+.||...-.. ....+.|..||. ||-
T Consensus 30 ~C~~CG~~~e~~--~~d~irCp~CG~RILy 57 (70)
T 1twf_L 30 ICAECSSKLSLS--RTDAVRCKDCGHRILL 57 (70)
T ss_dssp ECSSSCCEECCC--TTSTTCCSSSCCCCCB
T ss_pred ECCCCCCcceeC--CCCCccCCCCCceEeE
Confidence 599998762222 234567999998 653
No 93
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=71.11 E-value=1.9 Score=32.68 Aligned_cols=25 Identities=28% Similarity=0.716 Sum_probs=20.1
Q ss_pred CCCCCCCCCceeccCCCceecC--ccccee
Q 008455 3 WCSSCARHVTGHRPYDSQLCCD--RCGKVL 30 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt--~CG~Vl 30 (565)
.||.|++. +.++. |.++|. .||...
T Consensus 12 ~CP~c~~~-L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 12 ACPACHAP-LEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp CCSSSCSC-EEEET--TEEEECSSSCCCEE
T ss_pred eCCCCCCc-ceecC--CEEEcCCcCCCcEE
Confidence 79999986 34443 999999 999874
No 94
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=70.80 E-value=3.6 Score=33.48 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=26.5
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
|.+.|..+||+.+||+..||+++|..|.+
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45799999999999999999999999874
No 95
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=70.75 E-value=3.7 Score=32.90 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=26.1
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
|-..|..+||+.++|+..||++++..|.+
T Consensus 29 ~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 29 GKATTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp SSCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34789999999999999999999998874
No 96
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=70.57 E-value=1.6 Score=37.14 Aligned_cols=32 Identities=19% Similarity=0.480 Sum_probs=25.2
Q ss_pred CCCCCCCCCceeccCCCceecCcccceeccccc
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~~i 35 (565)
.||.||...+ .....|-..|..||.++.....
T Consensus 38 ~CpfCgk~~v-KR~a~GIW~C~kCg~~~AGGAy 69 (103)
T 4a17_Y 38 GCPFCGKVAV-KRAAVGIWKCKPCKKIIAGGAW 69 (103)
T ss_dssp ECTTTCCEEE-EEEETTEEEETTTTEEEECCSS
T ss_pred CCCCCCCcee-eecCcceEEcCCCCCEEeCCcc
Confidence 5999998854 4457899999999999875433
No 97
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=70.33 E-value=13 Score=30.51 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 008455 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (565)
Q Consensus 222 AALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~ 275 (565)
+.-||-.....-+.++.+||..+|+|+.++.+.+++.. .+|+.+|....
T Consensus 7 i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----g~s~~~~~~~~ 55 (103)
T 3lsg_A 7 IQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNF-----GIPFQDYLLQK 55 (103)
T ss_dssp HHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 34466666555589999999999999999999999987 56788887553
No 98
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=69.52 E-value=4.3 Score=37.31 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=28.4
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccCC
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDS 263 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s 263 (565)
+-++|..+||+.+|+|+.|+++|++.|.+..-
T Consensus 39 ~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 39 DGKAPLREISKITGLAESTIHERIRKLRESGV 70 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 45799999999999999999999999986543
No 99
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=68.96 E-value=15 Score=33.85 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHhhhc--cChHHHHHHHHHHHHHhh-----ccccc---cccccCCc--hhhHHHHHH
Q 008455 117 QVQASCLYLACRQKSKPFLLIDFSNYLN--INVYELGAVYLQLCQVLY-----IADES---NVLKQVDP--SIFLHKFTD 184 (565)
Q Consensus 117 ~vaAACLYiACR~e~~p~tL~DIa~~~~--vsv~~Lgr~~~~L~~~L~-----i~~~~---~~~~~vdP--~~~I~Rf~~ 184 (565)
.++=|.||++ +.|+++.+++.+++ ++...+......|...+. +.... .|.-...| ..||.++..
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~~~~ 85 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQLLA 85 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHHHS
T ss_pred HHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhc
Confidence 4566788876 78999999999999 999999999999888764 21111 01101111 222222211
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhhccccCCCChhHHHHHHH-HHHHHhcCCCCCHhHHHHHhccC
Q 008455 185 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAAL-YVSALTHGLKFSKSDIVKIVHIC 247 (565)
Q Consensus 185 ~L~~~l~~~V~~~A~~Lv~~m~~~~l~~GR~P~~IaaAAL-ylAar~~g~~~t~~eIa~v~~Vs 247 (565)
.+.|..+--|++ -||...+.-++|..+|+++.||+
T Consensus 86 ----------------------------~~~~~~LS~aaLEtLaiIay~qPiTR~eI~~irGv~ 121 (162)
T 1t6s_A 86 ----------------------------PVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGAS 121 (162)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCC
T ss_pred ----------------------------ccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC
Confidence 112333444554 44455556899999999999998
No 100
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=68.93 E-value=13 Score=30.91 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHH
Q 008455 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (565)
Q Consensus 219 IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~ 274 (565)
|.-+.-||-..... ++++.+||..+|+|+.++.+.+++.. .+|+.+|...
T Consensus 7 i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~ 56 (108)
T 3oou_A 7 IQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKEM-----GEHFTDYLNR 56 (108)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 44455566666554 89999999999999999999999887 5678888654
No 101
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=68.91 E-value=1.9 Score=29.68 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=9.8
Q ss_pred CCCCCCCCCceeccCCCceec
Q 008455 3 WCSSCARHVTGHRPYDSQLCC 23 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VC 23 (565)
.|+.||.-..++....|.++|
T Consensus 8 ~C~~CGnivev~~~g~~~l~C 28 (36)
T 1dxg_A 8 KCELCGQVVKVLEEGGGTLVC 28 (36)
T ss_dssp ECTTTCCEEEEEECCSSCEEE
T ss_pred EcCCCCcEEEEEeCCCcCEEe
Confidence 366665433333334455555
No 102
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=68.82 E-value=4.7 Score=35.84 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=27.8
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
+-+.|..+||+.+|+|+.|+++|++.+.+..
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 49 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRESG 49 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4579999999999999999999999998654
No 103
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=68.15 E-value=5 Score=35.67 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=27.4
Q ss_pred cCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 231 ~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+-+.|..+||+.+|+|+.|+++|++.+.+.
T Consensus 19 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 19 GNARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp HCTTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3457999999999999999999999999754
No 104
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=67.98 E-value=5.8 Score=36.25 Aligned_cols=48 Identities=19% Similarity=0.063 Sum_probs=40.5
Q ss_pred CchhHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 113 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 113 R~~~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
++...-+-+.+|+|.+..+.|.+..+||+.++++...|.+.+.+|.+.
T Consensus 24 ~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 24 TKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344566678889998766779999999999999999999999998774
No 105
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=67.97 E-value=5.5 Score=35.21 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=28.7
Q ss_pred cCCCCCHhHHHHHhccCHHHHHHHHHHHHccCC
Q 008455 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDS 263 (565)
Q Consensus 231 ~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s 263 (565)
.+-++|..+||+.+|+|.+|++++++.+.+..-
T Consensus 14 ~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~ 46 (150)
T 2pn6_A 14 YNAKYSLDEIAREIRIPKATLSYRIKKLEKDGV 46 (150)
T ss_dssp TCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence 345799999999999999999999999986543
No 106
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=67.55 E-value=1.5 Score=33.87 Aligned_cols=34 Identities=21% Similarity=0.525 Sum_probs=22.2
Q ss_pred CCCCCCCCCCCceeccCCCceecCcccceecccccccccccccc
Q 008455 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKN 44 (565)
Q Consensus 1 M~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~~id~~~ef~e~ 44 (565)
|..|+.||...+ .-+|..||.... ..+-+-|+-+
T Consensus 5 mr~C~~Cg~YTL-------k~~CP~CG~~t~---~ahParfSP~ 38 (60)
T 2aus_D 5 IRKCPKCGRYTL-------KETCPVCGEKTK---VAHPPRFSPE 38 (60)
T ss_dssp CEECTTTCCEES-------SSBCTTTCSBCE---ESSCCCCCSC
T ss_pred ceECCCCCCEEc-------cccCcCCCCccC---CCCCCCCCCC
Confidence 568999998643 348999998643 2333445543
No 107
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=67.23 E-value=12 Score=31.54 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=40.5
Q ss_pred ccCCchhHHHH--HHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHHhhc
Q 008455 110 TKGRRTEQVQA--SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (565)
Q Consensus 110 ~rGR~~~~vaA--ACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i 163 (565)
.++|+...+.| .+.|++-.. +..+|.+|+..+|-+..++..+++++.+.+.-
T Consensus 27 s~~R~~~i~~aRqiAmYL~r~~--t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 27 GPGKTRALAQSRQIAMYLCREL--TDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHHHHHH--hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 45565555555 567775544 57889999999999999999999999988764
No 108
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=67.21 E-value=5.3 Score=35.41 Aligned_cols=31 Identities=6% Similarity=0.292 Sum_probs=27.5
Q ss_pred cCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 231 ~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+-+.|..+||+.+|+|+.|+++|++.+.+.
T Consensus 20 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 20 ENSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp HCTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3457999999999999999999999999754
No 109
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=67.20 E-value=14 Score=30.61 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHH
Q 008455 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (565)
Q Consensus 219 IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~ 274 (565)
|.-+.-||-....+.++++.+||+.+|+|..++.+.+++.. .+|+.+|...
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~ 55 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQL-----GISVLSWRED 55 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 34445566665555789999999999999999999999876 5677888654
No 110
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=66.96 E-value=5.3 Score=35.94 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=27.6
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
+-+.|..+||+.+|+|..|+++|++.+.+..
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 52 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLEDAG 52 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4568999999999999999999999997543
No 111
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=66.84 E-value=8.2 Score=28.71 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=25.0
Q ss_pred CCCCCHhHHHHHh-----ccCHHHHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIV-----HICEATLMKRLIEFE 259 (565)
Q Consensus 232 g~~~t~~eIa~v~-----~Vse~TIrkR~kE~~ 259 (565)
+-..|..+|+..+ +||..||++-++++.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg 49 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKELH 49 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 4579999999999 999999999999664
No 112
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=66.83 E-value=4 Score=31.63 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=20.4
Q ss_pred CCHhHHHHHhccCHHHHHHHHH
Q 008455 235 FSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 235 ~t~~eIa~v~~Vse~TIrkR~k 256 (565)
+|++|||+.+|||..||.+-++
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4899999999999999999886
No 113
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=66.75 E-value=4.1 Score=30.16 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=24.4
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
...|.++||...++|+.||+.++..+..
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999987763
No 114
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=66.69 E-value=5.5 Score=35.13 Aligned_cols=31 Identities=10% Similarity=0.288 Sum_probs=27.6
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
+-+.|..+||+.+|+|..|+++|++.+.+..
T Consensus 17 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 47 (144)
T 2cfx_A 17 DSRLSMRELGRKIKLSPPSVTERVRQLESFG 47 (144)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4579999999999999999999999997543
No 115
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=66.17 E-value=5.9 Score=34.49 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=27.8
Q ss_pred cCCCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 231 ~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
.+-+.|..+||+.+|+|..|++++++.+.+..
T Consensus 15 ~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G 46 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGISETAVRKRVKALEEKG 46 (141)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34578999999999999999999999998543
No 116
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=65.97 E-value=2.4 Score=31.39 Aligned_cols=28 Identities=21% Similarity=0.666 Sum_probs=19.4
Q ss_pred CCCCCCCCCCceec---------cCCCceecCcccce
Q 008455 2 VWCSSCARHVTGHR---------PYDSQLCCDRCGKV 29 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D---------~~~G~~VCt~CG~V 29 (565)
..||.||....++= +.+=.++|.+||..
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred cCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 47999998855431 12336899999963
No 117
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=65.96 E-value=54 Score=31.39 Aligned_cols=101 Identities=7% Similarity=0.009 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHH
Q 008455 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV 194 (565)
Q Consensus 115 ~~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V 194 (565)
...+..+.-||--.. ..++++.++|+.+++++..|.+.|+ + .| ..|..||.+. -
T Consensus 168 ~~~~~~~~~~i~~~~-~~~~sl~~lA~~~~~S~~~l~r~fk---~-~G----------~t~~~~l~~~-----------R 221 (276)
T 3gbg_A 168 LDAMEKISCLVKSDI-TRNWRWADICGELRTNRMILKKELE---S-RG----------VKFRELINSI-----------R 221 (276)
T ss_dssp TCHHHHHHHHHHHTT-TSCCCHHHHHHHHTCCHHHHHHHHH---T-TT----------CCHHHHHHHH-----------H
T ss_pred HHHHHHHHHHHHHhh-cCCCCHHHHHHHHCcCHHHHHHHHH---H-cC----------CCHHHHHHHH-----------H
Confidence 344555556665333 4488999999999999988888774 2 44 3355555433 1
Q ss_pred HHHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhcc-CHHHHHHHHHHHHccCCCCCCHHHHHH
Q 008455 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI-CEATLMKRLIEFENTDSGSLTIEDFMA 273 (565)
Q Consensus 195 ~~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~V-se~TIrkR~kE~~~t~s~~Lt~~~f~~ 273 (565)
...|.+ +|. .-..|+.+||..+|. +.+...+.+|... -+||.+|++
T Consensus 222 l~~A~~------------------------lL~----~~~~si~eIA~~~Gf~~~s~F~r~Fkk~~-----G~tP~~yR~ 268 (276)
T 3gbg_A 222 ISYSIS------------------------LMK----TGEFKIKQIAYQSGFASVSYFSTVFKSTM-----NVAPSEYLF 268 (276)
T ss_dssp HHHHHH------------------------HHH----HTCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHH
T ss_pred HHHHHH------------------------HHh----CCCCCHHHHHHHhCCCCHHHHHHHHHHHH-----CcCHHHHHH
Confidence 112222 221 124689999999998 4578888888887 788899987
Q ss_pred H
Q 008455 274 R 274 (565)
Q Consensus 274 ~ 274 (565)
.
T Consensus 269 ~ 269 (276)
T 3gbg_A 269 M 269 (276)
T ss_dssp H
T ss_pred H
Confidence 5
No 118
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=65.53 E-value=5.8 Score=36.38 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=27.5
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
+-++|..+||+.+|+|+.|+++|++.+.+..
T Consensus 29 ~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G 59 (171)
T 2ia0_A 29 DARLTISELSEQLKKPESTIHFRIKKLQERG 59 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4579999999999999999999999997543
No 119
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=65.50 E-value=7.1 Score=30.91 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=26.0
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-+.|..+||+.++|+..||++.++.|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35899999999999999999999999743
No 120
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=65.43 E-value=2 Score=34.25 Aligned_cols=27 Identities=26% Similarity=0.657 Sum_probs=20.7
Q ss_pred CCCCCCCCCCceeccCCCceecCcccceec
Q 008455 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vle 31 (565)
+.|| ||...+ .+...-..-|. ||.++.
T Consensus 5 v~C~-C~~~~~-~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 5 FRCD-CGRALY-SREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEET-TSCCEE-EETTCSEEEET-TTEEEE
T ss_pred EECC-CCCEEE-EcCCCcEEECC-CCCeee
Confidence 4699 998754 44456678999 999986
No 121
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=64.59 E-value=18 Score=34.20 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=26.9
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999865
No 122
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=64.26 E-value=1.1 Score=31.73 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.3
Q ss_pred CCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 235 FSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 235 ~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
.|+.+||..+|||..||.+.++.+.
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 7999999999999999999877543
No 123
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=63.62 E-value=7.1 Score=31.19 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=25.7
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
...|.++||...++|..||++++..+...-
T Consensus 35 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVKHMLKKM 64 (82)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 447999999999999999999998876443
No 124
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=63.49 E-value=6.9 Score=30.20 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=27.6
Q ss_pred cCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 231 ~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
++-+++..+||+.++|+..||.+.++.|.+.
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4567899999999999999999999999753
No 125
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=63.47 E-value=7.4 Score=29.65 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=24.4
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
...|.++||...|+|..||+++++.+..
T Consensus 25 ~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 25 QDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3459999999999999999999988763
No 126
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=63.44 E-value=5.6 Score=32.09 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=25.8
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
.-.+++.++|+.++||+.|||+=|.++.+
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~~Le~ 42 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35789999999999999999999988873
No 127
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=62.84 E-value=7.3 Score=34.50 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=27.6
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
+-+.|..+||+.+|+|..|++++++.+.+..
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 49 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESRG 49 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4579999999999999999999999998543
No 128
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=62.24 E-value=2.8 Score=36.46 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=0.0
Q ss_pred CCCCCCCCCCceeccC-------------CC--ceecCccccee
Q 008455 2 VWCSSCARHVTGHRPY-------------DS--QLCCDRCGKVL 30 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~-------------~G--~~VCt~CG~Vl 30 (565)
|.||.||+.....+.. .+ ..+|..||-++
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~ 46 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESI 46 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEE
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEe
No 129
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=62.10 E-value=21 Score=29.43 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHH
Q 008455 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (565)
Q Consensus 219 IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~ 274 (565)
|.-+.-||.... ..++++.+||..+|+|+.++.+.+++.. .+|+.+|...
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~~-----G~s~~~~~~~ 53 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRSR-----GYSPMAFAKR 53 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHHT-----SSCHHHHHHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHHh-----CcCHHHHHHH
Confidence 334445666555 4469999999999999999999999886 5678888754
No 130
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=62.05 E-value=2.7 Score=30.67 Aligned_cols=23 Identities=30% Similarity=0.876 Sum_probs=13.5
Q ss_pred CCCCCCCCCceeccCCCc----------eecCcccc
Q 008455 3 WCSSCARHVTGHRPYDSQ----------LCCDRCGK 28 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~----------~VCt~CG~ 28 (565)
.|+.||- ++|+..|+ .+|..||.
T Consensus 6 ~C~vCGy---vyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 6 VCNVCGY---EYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp EETTTCC---EECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred ECCCCCe---EEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 4777763 45554442 37777775
No 131
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.01 E-value=2.5 Score=31.56 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=18.7
Q ss_pred CCCCCCCCCceeccCCCceecCcccce
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKV 29 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~V 29 (565)
.||.||+. ...|-..|..||.+
T Consensus 16 iCpkC~a~-----~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 16 VCLRCGAT-----NPWGAKKCRKCGYK 37 (51)
T ss_dssp ECTTTCCE-----ECTTCSSCSSSSSC
T ss_pred cCCCCCCc-----CCCCceecCCCCCc
Confidence 69999986 34799999999987
No 132
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=61.88 E-value=6.6 Score=29.93 Aligned_cols=29 Identities=3% Similarity=0.050 Sum_probs=25.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
...|.++||...|+|+.||++++......
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRK 52 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 46899999999999999999998776643
No 133
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=61.72 E-value=7.2 Score=39.24 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=29.3
Q ss_pred HHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 227 Aar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+...+.-.+++.+||+.++||+.|||+=|+++.+.
T Consensus 14 a~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~ 48 (315)
T 2w48_A 14 AQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQ 48 (315)
T ss_dssp HHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33345567999999999999999999999998754
No 134
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=61.67 E-value=7.3 Score=34.72 Aligned_cols=46 Identities=13% Similarity=-0.024 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 115 ~~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
...-+-+.+|+|-...+.|.+..+||+.++++...|.+.+.+|.+.
T Consensus 10 ~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 10 GRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3445557788887655679999999999999999999999999774
No 135
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=60.79 E-value=6 Score=32.37 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=24.3
Q ss_pred CCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 235 FSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 235 ~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
.|..+||+.+||+..||+++|..|..
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~ 56 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQR 56 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88999999999999999999998864
No 136
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=60.43 E-value=1.7e+02 Score=30.85 Aligned_cols=25 Identities=0% Similarity=-0.035 Sum_probs=22.5
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIE 257 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE 257 (565)
...|+++||..+|||..|||+++..
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~R 418 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENK 418 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6799999999999999999987654
No 137
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=60.40 E-value=8.8 Score=29.75 Aligned_cols=42 Identities=7% Similarity=0.027 Sum_probs=30.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~ 275 (565)
...|.++||...++++.||+.++..+...-. .-+..++....
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~-~~~~~~l~~~~ 71 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVMAKMK-AKSLPHLVRMA 71 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT-CCSHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 4579999999999999999999988764332 22344444443
No 138
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=59.26 E-value=11 Score=28.40 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=24.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
...|.++||...|+|+.||++++....
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 458999999999999999999988765
No 139
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=58.81 E-value=12 Score=32.30 Aligned_cols=43 Identities=16% Similarity=0.042 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHH
Q 008455 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159 (565)
Q Consensus 117 ~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~ 159 (565)
..+.+.+|++-+..+.|.+..+||+.++++...+.+.+..|.+
T Consensus 10 ~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 10 YGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRN 52 (129)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444556666555577899999999999999999999998877
No 140
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=58.76 E-value=3.6 Score=33.96 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCCCCCCC-Cc--eecc--CCCceecCcccceecc
Q 008455 3 WCSSCARH-VT--GHRP--YDSQLCCDRCGKVLED 32 (565)
Q Consensus 3 ~Cp~Cgs~-~i--~~D~--~~G~~VCt~CG~Vlee 32 (565)
.||.||.. .+ ..|. ..|.+.|..||.-.+-
T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred cCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 59999987 33 3443 3689999999987654
No 141
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=58.48 E-value=15 Score=33.19 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=26.5
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999754
No 142
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=58.25 E-value=16 Score=30.13 Aligned_cols=99 Identities=13% Similarity=0.187 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHHH
Q 008455 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197 (565)
Q Consensus 118 vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~~ 197 (565)
+..++-||--...+.++++.++|+.++++...|.+.|++. +| ..|..||.+.- ...
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~---~G----------~s~~~~~~~~R-----------l~~ 60 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ---LG----------ISVLSWREDQR-----------ISQ 60 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH---HS----------SCHHHHHHHHH-----------HHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH---HC----------cCHHHHHHHHH-----------HHH
Confidence 4445556655544478999999999999999999877744 44 34556655331 011
Q ss_pred HHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccCH-HHHHHHHHHHHccCCCCCCHHHHHH
Q 008455 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE-ATLMKRLIEFENTDSGSLTIEDFMA 273 (565)
Q Consensus 198 A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vse-~TIrkR~kE~~~t~s~~Lt~~~f~~ 273 (565)
| .-+|. .-..++.+||..+|-+. +...+.++... .+||.+|++
T Consensus 61 A------------------------~~lL~----~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yr~ 104 (107)
T 2k9s_A 61 A------------------------KLLLS----TTRMPIATVGRNVGFDDQLYFSRVFKKCT-----GASPSEFRA 104 (107)
T ss_dssp H------------------------HHHHH----HCCCCHHHHHHHTTCCCHHHHHHHHHHHH-----SSCHHHHHH
T ss_pred H------------------------HHHHH----cCCCCHHHHHHHhCCCCHHHHHHHHHHHH-----CcCHHHHHh
Confidence 2 22221 12467788888888754 67777777776 566777764
No 143
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=58.16 E-value=19 Score=33.93 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=27.5
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
.+++|+.+||..+|++..|+.+-+++|.+-.
T Consensus 191 ~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~G 221 (243)
T 3la7_A 191 DLKLSHQAIAEAIGSTRVTVTRLLGDLREKK 221 (243)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred eccCCHHHHHHHHCCcHHHHHHHHHHHHHCC
Confidence 3578999999999999999999999998543
No 144
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=57.56 E-value=11 Score=30.57 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=23.9
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
...|.++||..+||++.||++++....
T Consensus 52 ~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999987665
No 145
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=57.36 E-value=7.4 Score=33.09 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=23.3
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
-..|+++||+.+|||.+||.+-=+.|.
T Consensus 57 ge~TQREIA~~lGiS~stISRi~r~L~ 83 (101)
T 1jhg_A 57 GEMSQRELKNELGAGIATITRGSNSLK 83 (101)
T ss_dssp CCSCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhhhHHHHHHH
Confidence 359999999999999999998855554
No 146
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=57.31 E-value=11 Score=34.90 Aligned_cols=30 Identities=3% Similarity=0.148 Sum_probs=26.7
Q ss_pred cCCCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 231 ~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
.+-.+|.+++|+.++||..||+++++.+.+
T Consensus 33 ~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 33 SKEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp CSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344589999999999999999999999875
No 147
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=57.05 E-value=17 Score=33.27 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=27.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
+++|+.+||..+|++..|+.+-+++|.+-.
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g 197 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVEG 197 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 578999999999999999999999998643
No 148
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=57.01 E-value=9.4 Score=30.97 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=26.8
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+-.+|+.+|++.++|+.+||++.++.|.+.
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~ 63 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 557999999999999999999999999743
No 149
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=56.62 E-value=11 Score=31.39 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=27.2
Q ss_pred cCCCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 231 ~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
.|-++|..+||..+||+.+||++.++.|.+
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 566789999999999999999999999874
No 150
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=55.93 E-value=10 Score=33.91 Aligned_cols=45 Identities=16% Similarity=-0.047 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHH
Q 008455 114 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 159 (565)
Q Consensus 114 ~~~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~ 159 (565)
+...-+-+.+|+|-+ .+.|.+..+||+.++++...|.+.+..|.+
T Consensus 12 ~~~yAl~~L~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~ 56 (149)
T 1ylf_A 12 RFSIAVHILSILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQ 56 (149)
T ss_dssp HHHHHHHHHHHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344556677888863 466899999999999999999999999988
No 151
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=55.85 E-value=13 Score=28.69 Aligned_cols=27 Identities=0% Similarity=-0.095 Sum_probs=23.5
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
...|.++||...|+|+.||++++....
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 579999999999999999998776543
No 152
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=55.55 E-value=7.6 Score=32.06 Aligned_cols=31 Identities=6% Similarity=0.029 Sum_probs=26.8
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
.-.+++.++|+.++||+.|||+=|.++.+..
T Consensus 14 ~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 14 QGRMEAKQLSARLQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3578999999999999999999999887443
No 153
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=55.52 E-value=5.8 Score=32.38 Aligned_cols=27 Identities=19% Similarity=0.664 Sum_probs=18.4
Q ss_pred CCCCCCCCCceeccCCCceecCccccee
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vl 30 (565)
+||.|+...+ .+.....+.|..||...
T Consensus 27 wCP~C~~~~~-~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 27 WCAQCSFGFI-YEREQLEATCPQCHQTF 53 (86)
T ss_dssp CCSSSCCCEE-CCCSCSCEECTTTCCEE
T ss_pred ECcCCCchhe-ecCCCCceEeCCCCCcc
Confidence 6998887643 34445567888888764
No 154
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=55.32 E-value=5 Score=30.26 Aligned_cols=10 Identities=30% Similarity=1.026 Sum_probs=4.5
Q ss_pred ecCcccceec
Q 008455 22 CCDRCGKVLE 31 (565)
Q Consensus 22 VCt~CG~Vle 31 (565)
+|+.||.|.+
T Consensus 5 ~C~vCGyvYd 14 (54)
T 4rxn_A 5 TCTVCGYIYD 14 (54)
T ss_dssp EETTTCCEEC
T ss_pred ECCCCCeEEC
Confidence 4444444444
No 155
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=55.27 E-value=9 Score=30.83 Aligned_cols=29 Identities=0% Similarity=-0.020 Sum_probs=24.9
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
...|.++||...|||..||++++......
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRK 65 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67999999999999999999988665533
No 156
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=55.20 E-value=13 Score=32.05 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 223 ALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 223 ALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.||.+-..++-+ .|+.+|++.++++.+||.++++.|.+.
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344443445555 899999999999999999999998744
No 157
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=54.99 E-value=20 Score=33.00 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=26.7
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 67899999999999999999999999754
No 158
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=54.90 E-value=9.1 Score=31.44 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=23.7
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
...|.++||..+++|+.||++++..+.
T Consensus 41 ~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346899999999999999999987765
No 159
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=54.81 E-value=28 Score=28.92 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHH
Q 008455 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (565)
Q Consensus 219 IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~ 274 (565)
|.-+.-||-.. ...++++.+||..+|+|+.++.+.+++.. .+|+.+|...
T Consensus 9 i~~~~~~i~~~-~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~ 58 (113)
T 3oio_A 9 LTEAVSLMEAN-IEEPLSTDDIAYYVGVSRRQLERLFKQYL-----GTVPSKYYLE 58 (113)
T ss_dssp HHHHHHHHHTC-SSSCCCHHHHHHHHTSCHHHHHHHHHHHT-----SSCHHHHHHH
T ss_pred HHHHHHHHHhh-hcCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 33344455443 34569999999999999999999999886 5678888654
No 160
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=54.63 E-value=5 Score=29.95 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=5.2
Q ss_pred eecCcccceec
Q 008455 21 LCCDRCGKVLE 31 (565)
Q Consensus 21 ~VCt~CG~Vle 31 (565)
.+|+.||.|.+
T Consensus 4 y~C~~CGyvYd 14 (52)
T 1e8j_A 4 YVCTVCGYEYD 14 (52)
T ss_dssp EECSSSCCCCC
T ss_pred EEeCCCCeEEc
Confidence 34555554444
No 161
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=54.29 E-value=23 Score=32.75 Aligned_cols=30 Identities=10% Similarity=0.339 Sum_probs=27.0
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 178 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 178 SIYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred EcccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 357899999999999999999999999754
No 162
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=54.19 E-value=3.6 Score=31.71 Aligned_cols=22 Identities=27% Similarity=0.662 Sum_probs=15.5
Q ss_pred CCCCCCCCCCceeccCCCceecCcccce
Q 008455 2 VWCSSCARHVTGHRPYDSQLCCDRCGKV 29 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~~G~~VCt~CG~V 29 (565)
+.||+||... .-..||..||.-
T Consensus 31 ~~c~~cGe~~------~~H~vc~~CG~Y 52 (60)
T 3v2d_5 31 VPCPECKAMK------PPHTVCPECGYY 52 (60)
T ss_dssp EECTTTCCEE------CTTSCCTTTCEE
T ss_pred eECCCCCCee------cceEEcCCCCcC
Confidence 4699998752 234589999964
No 163
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=53.89 E-value=12 Score=30.02 Aligned_cols=31 Identities=10% Similarity=0.197 Sum_probs=27.2
Q ss_pred cCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 231 ~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+-..|+.+|++.++++.+||++.++.+.+.
T Consensus 35 ~~~~~s~~ela~~l~is~~tvs~~l~~L~~~ 65 (99)
T 3cuo_A 35 GSPGTSAGELTRITGLSASATSQHLARMRDE 65 (99)
T ss_dssp TCCSEEHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred hCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3557899999999999999999999999743
No 164
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=53.82 E-value=4.9 Score=29.27 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=18.9
Q ss_pred CCCCCCCCC-ceecc-CCCceecCccccee
Q 008455 3 WCSSCARHV-TGHRP-YDSQLCCDRCGKVL 30 (565)
Q Consensus 3 ~Cp~Cgs~~-i~~D~-~~G~~VCt~CG~Vl 30 (565)
.|.+|+... ..+.. .+|..+|..||.-.
T Consensus 6 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~ 35 (46)
T 1gnf_A 6 ECVNCGATATPLWRRDRTGHYLCNACGLYH 35 (46)
T ss_dssp CCTTTCCCCCSSCBCCTTCCCBCSHHHHHH
T ss_pred CCCCcCCCCCCcCccCCCCCccchHHHHHH
Confidence 688898763 33432 36788899998743
No 165
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=53.59 E-value=9.9 Score=31.11 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=24.7
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
...|.++||..++||+.||+.++..+..
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468999999999999999999988864
No 166
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=53.04 E-value=12 Score=32.15 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=27.9
Q ss_pred hcCCCCCHhHHHHHh--ccCHHHHHHHHHHHHccC
Q 008455 230 THGLKFSKSDIVKIV--HICEATLMKRLIEFENTD 262 (565)
Q Consensus 230 ~~g~~~t~~eIa~v~--~Vse~TIrkR~kE~~~t~ 262 (565)
.+| +.|..+||..+ ++|..+|++|++.+.+..
T Consensus 24 ~~g-~~s~~eLA~~l~~giS~~aVs~rL~~Le~~G 57 (111)
T 3b73_A 24 EEG-NGSPKELEDRDEIRISKSSVSRRLKKLADHD 57 (111)
T ss_dssp HHS-CBCHHHHHTSTTCCSCHHHHHHHHHHHHHTT
T ss_pred HcC-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 345 89999999999 999999999999998643
No 167
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=53.02 E-value=25 Score=30.16 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=27.7
Q ss_pred cCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 231 ~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+-.+|+++||+.++|+.+||++.++.+.+.
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 3567899999999999999999999999754
No 168
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=53.01 E-value=8.9 Score=31.04 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=25.1
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
...|.++||..+++|+.||+.++..+...
T Consensus 43 ~g~s~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 43 KGYSNQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp TTCCTTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 35789999999999999999999877643
No 169
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=52.96 E-value=18 Score=28.94 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=28.1
Q ss_pred CCCccHHHHHhhhccChHHHHHHHHHHHHHhhc
Q 008455 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (565)
Q Consensus 131 ~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i 163 (565)
|.|.++.|||+.++++..++.+-...|.+.=-|
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I 54 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVL 54 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 789999999999999999998888877775333
No 170
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=52.92 E-value=17 Score=30.79 Aligned_cols=35 Identities=0% Similarity=-0.102 Sum_probs=28.9
Q ss_pred HHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 226 VSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 226 lAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
+|..++-...||.+||+.+|||..||.+-++.-.+
T Consensus 26 ~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~ 60 (101)
T 2w7n_A 26 IARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWA 60 (101)
T ss_dssp HHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444567899999999999999999999888773
No 171
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=52.80 E-value=33 Score=28.90 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=26.9
Q ss_pred cCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 231 ~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
++ .+|+.+|+..++++.+|+.+.++.+.+-
T Consensus 50 ~~-~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 50 TG-PCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp HS-SBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 44 8999999999999999999999998754
No 172
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=52.74 E-value=14 Score=34.37 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=29.5
Q ss_pred HhcCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 229 r~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
..+|++.|++|||+.+|++..|++++++.|.+.
T Consensus 19 ~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~ 51 (196)
T 3k2z_A 19 EKNGYPPSVREIARRFRITPRGALLHLIALEKK 51 (196)
T ss_dssp HHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHC
Confidence 357889999999999999999999999999744
No 173
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=52.70 E-value=26 Score=32.52 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=27.9
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
.++.|+.+||..+|++..|+.+-+++|.+-.
T Consensus 176 ~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~g 206 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMKPESLSRAFSRLKAAG 206 (237)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGGT
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4678899999999999999999999998654
No 174
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=52.35 E-value=25 Score=29.14 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=39.5
Q ss_pred ccCCchhHHHH--HHHHHHHHhcCCCccHHHHHhhh-ccChHHHHHHHHHHHHHhhc
Q 008455 110 TKGRRTEQVQA--SCLYLACRQKSKPFLLIDFSNYL-NINVYELGAVYLQLCQVLYI 163 (565)
Q Consensus 110 ~rGR~~~~vaA--ACLYiACR~e~~p~tL~DIa~~~-~vsv~~Lgr~~~~L~~~L~i 163 (565)
.++|+...+.| .+.|++-.. +..+|.+|+..+ |.+..++..+++++.+.+.-
T Consensus 23 s~~R~~~i~~aRqiamyL~r~~--t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 23 SKRRSRSVARPRQMAMALAKEL--TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHH--SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHH--HCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 34555555555 566775444 568899999999 79999999999999987753
No 175
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=52.27 E-value=12 Score=35.39 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.8
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEF 258 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~ 258 (565)
....||.+||+.+|||..||.+.++.-
T Consensus 22 ~~g~tQ~eIA~~lGiSr~~VSR~L~~A 48 (192)
T 1zx4_A 22 NDGMSQKDIAAKEGLSQAKVTRALQAA 48 (192)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHHHh
Confidence 355999999999999999999988764
No 176
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=52.04 E-value=14 Score=30.03 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=26.3
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-+.+..+|++.+|++.+||++.++.+.+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRD 63 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999754
No 177
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=51.99 E-value=7.5 Score=38.56 Aligned_cols=32 Identities=13% Similarity=0.419 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCceeccCCCceecCcccceeccc
Q 008455 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDH 33 (565)
Q Consensus 1 M~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vlee~ 33 (565)
+..||.||+..... ...-..+|..||.+.=.+
T Consensus 107 ~~fC~~CG~~~~~~-~~~~~~~C~~C~~~~yp~ 138 (269)
T 1vk6_A 107 HKYCGYCGHEMYPS-KTEWAMLCSHCRERYYPQ 138 (269)
T ss_dssp TSBCTTTCCBEEEC-SSSSCEEESSSSCEECCC
T ss_pred CCccccCCCcCccC-CCceeeeCCCCCCEecCC
Confidence 45899999875433 334577999999976543
No 178
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=51.97 E-value=7 Score=36.40 Aligned_cols=25 Identities=16% Similarity=0.522 Sum_probs=21.1
Q ss_pred CCCCCCCCCceeccCCCceecCcccce
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKV 29 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~V 29 (565)
.||.|++.. .+..+|...|..||..
T Consensus 44 ACp~CnKKV--~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGKSV--LKYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCCCE--EEETTTEEEETTTTEE
T ss_pred hchhhCCEe--eeCCCCeEECCCCCCC
Confidence 599999874 3556899999999998
No 179
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=51.86 E-value=92 Score=31.28 Aligned_cols=102 Identities=8% Similarity=-0.101 Sum_probs=75.2
Q ss_pred CCchhhHHHHHHhhCCCCCHHHHHHHHHHHHHhhhc---cccCCCChhHHHHHHHHHHHHhcCC-CCCHhHHHHHhccCH
Q 008455 173 VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRD---WITTGRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVHICE 248 (565)
Q Consensus 173 vdP~~~I~Rf~~~L~~~l~~~V~~~A~~Lv~~m~~~---~l~~GR~P~~IaaAALylAar~~g~-~~t~~eIa~v~~Vse 248 (565)
+.-..||.|+...-. ++..+.-.|+-.++++... ...+.....-+-.+||.+|+...+. ..+.+..|++.||+.
T Consensus 75 ISI~~Yl~RI~k~t~--ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl 152 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSS--LEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRC 152 (293)
T ss_dssp SCHHHHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCH
T ss_pred CcHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCH
Confidence 444566666666555 7899998888888888752 3345567788999999999987754 568999999999999
Q ss_pred HHHHHHHHHHHccCCCCC--CHHHHHHHHH
Q 008455 249 ATLMKRLIEFENTDSGSL--TIEDFMARKK 276 (565)
Q Consensus 249 ~TIrkR~kE~~~t~s~~L--t~~~f~~~~~ 276 (565)
..|..-=.+|...-.=.| +.++|..--.
T Consensus 153 ~ELN~LE~eFL~lLdf~L~V~~ee~~~cy~ 182 (293)
T 2pmi_B 153 HELNILENDFLKRVNYRIIPRDHNITLCSI 182 (293)
T ss_dssp HHHHHHHHHHHHTTTTCCSCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCceeeCHHHHHHHHH
Confidence 888887788876655455 4556665433
No 180
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=51.26 E-value=17 Score=33.03 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.5
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999854
No 181
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=51.26 E-value=8.2 Score=35.46 Aligned_cols=28 Identities=29% Similarity=0.637 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCceeccC---CCceecCcccc
Q 008455 1 MVWCSSCARHVTGHRPY---DSQLCCDRCGK 28 (565)
Q Consensus 1 M~~Cp~Cgs~~i~~D~~---~G~~VCt~CG~ 28 (565)
+..||.||....+..+. .-..+|..||.
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCccccccccCCCCcceECCCCCC
Confidence 45899999986544331 22569999994
No 182
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=51.18 E-value=6.1 Score=30.78 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=20.6
Q ss_pred CCCHhHHHHHhccCHHHHHHHHH
Q 008455 234 KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
.+|++|||+.+|||..||.+.+.
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 47999999999999999998764
No 183
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=50.89 E-value=5.9 Score=31.68 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=7.9
Q ss_pred CCCCCCCCCCc
Q 008455 2 VWCSSCARHVT 12 (565)
Q Consensus 2 ~~Cp~Cgs~~i 12 (565)
+.||.||+..+
T Consensus 3 m~Cp~Cg~~~l 13 (78)
T 3ga8_A 3 MKCPVCHQGEM 13 (78)
T ss_dssp CBCTTTSSSBE
T ss_pred eECCCCCCCee
Confidence 57999987633
No 184
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=50.72 E-value=12 Score=32.76 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=22.4
Q ss_pred CCCCCCCCCCceec---------cCCCceecCcccceecccc
Q 008455 2 VWCSSCARHVTGHR---------PYDSQLCCDRCGKVLEDHN 34 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D---------~~~G~~VCt~CG~Vlee~~ 34 (565)
..||.||....++= +.+=.++|++||..-.++.
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn 114 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ 114 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCC
Confidence 36999998855432 1233689999998755543
No 185
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=50.70 E-value=22 Score=28.65 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=27.8
Q ss_pred hcCCCCCHhHHHHHhccCHHH-HHHHHHHHHcc
Q 008455 230 THGLKFSKSDIVKIVHICEAT-LMKRLIEFENT 261 (565)
Q Consensus 230 ~~g~~~t~~eIa~v~~Vse~T-IrkR~kE~~~t 261 (565)
.++..+|+.+||+.++++.+| +.+.++.+.+-
T Consensus 26 ~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 26 KKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 345579999999999999999 99999998754
No 186
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=50.52 E-value=17 Score=33.12 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 222 AALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+.+|||.+-.+-++|.++||...+|+...+++-+..|...
T Consensus 32 ~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 32 ITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4456766544557999999999999999999999998754
No 187
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=50.29 E-value=18 Score=32.78 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=26.5
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999854
No 188
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=49.94 E-value=35 Score=32.06 Aligned_cols=50 Identities=6% Similarity=-0.009 Sum_probs=31.7
Q ss_pred CCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHH
Q 008455 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180 (565)
Q Consensus 131 ~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~ 180 (565)
..|.+..+||+.+|++..+|.|+.++|.+.=-|..........||..+-.
T Consensus 191 ~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d~~~L~~ 240 (243)
T 3la7_A 191 DLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHKPVTLSR 240 (243)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECC------
T ss_pred eccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEECCHHHHHh
Confidence 35789999999999999999999999987432332222223456554433
No 189
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=49.88 E-value=6.7 Score=36.45 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=20.5
Q ss_pred CCCCCCCCCCceecc--CC--CceecCccccee
Q 008455 2 VWCSSCARHVTGHRP--YD--SQLCCDRCGKVL 30 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~--~~--G~~VCt~CG~Vl 30 (565)
+.|+.|++.+..+-- .+ =.+.|..||..-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRG 129 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCcc
Confidence 479999998553332 33 367899999863
No 190
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=49.29 E-value=32 Score=29.42 Aligned_cols=52 Identities=4% Similarity=0.010 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHH
Q 008455 217 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (565)
Q Consensus 217 ~~IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~ 274 (565)
.-|.-+.-||-... ..++++.+||+.+|+|+.++.+.+++.. .+|+.+|...
T Consensus 11 ~~i~~~~~~i~~~~-~~~~sl~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~l~~ 62 (129)
T 1bl0_A 11 ITIHSILDWIEDNL-ESPLSLEKVSERSGYSKWHLQRMFKKET-----GHSLGQYIRS 62 (129)
T ss_dssp HHHHHHHHHHHTTT-TSCCCCHHHHHHSSSCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred HHHHHHHHHHHHcc-CCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 33444444555443 3459999999999999999999999886 5677888654
No 191
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=48.89 E-value=7.9 Score=32.29 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=21.3
Q ss_pred CCHhHHHHHhccCHHHHHHHHHH
Q 008455 235 FSKSDIVKIVHICEATLMKRLIE 257 (565)
Q Consensus 235 ~t~~eIa~v~~Vse~TIrkR~kE 257 (565)
+|+.|||+.+|||..||++-|..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 79999999999999999998864
No 192
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=48.61 E-value=20 Score=30.79 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 225 YVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 225 ylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
||+.+-.+-.+|.++||..++|+..++++-+..+.+.
T Consensus 17 ~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 17 ELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp HHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3443333567899999999999999999999999754
No 193
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=48.50 E-value=25 Score=26.93 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=28.2
Q ss_pred HhcCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 128 R~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
+.++.|+++.|||..++++..++.+....|.+.
T Consensus 20 ~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 20 SDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346678999999999999999999988887664
No 194
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=48.45 E-value=19 Score=32.60 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=27.1
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
+++|+.+||..+|+|..|+.+-+++|.+-.
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g 174 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREG 174 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 568999999999999999999999998553
No 195
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=48.45 E-value=28 Score=32.04 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=26.5
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999854
No 196
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=48.44 E-value=23 Score=33.05 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=26.6
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+++|+.+||..+|+|..|+.+.+++|.+-
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 56899999999999999999999999754
No 197
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=48.42 E-value=15 Score=30.11 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=26.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-+.+..+|++.++++.+||++.++.+.+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRES 63 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35899999999999999999999999754
No 198
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=47.55 E-value=15 Score=29.55 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=26.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-++|+.+|++.++++..||.+.++.|.+.
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999998743
No 199
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=47.29 E-value=55 Score=30.62 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=35.7
Q ss_pred CchhHHHHHHHHHHHHhc----------CCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 113 RRTEQVQASCLYLACRQK----------SKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 113 R~~~~vaAACLYiACR~e----------~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
.+...-+|..|+.-+... ..|.+..+||+.+|++..+|.|+.++|.+.
T Consensus 147 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 147 YNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp SCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 444444555554444443 358899999999999999999999999885
No 200
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=47.26 E-value=7.7 Score=37.91 Aligned_cols=29 Identities=14% Similarity=0.587 Sum_probs=19.6
Q ss_pred CCCCCCCCCCce-e--ccCCCceecCccccee
Q 008455 2 VWCSSCARHVTG-H--RPYDSQLCCDRCGKVL 30 (565)
Q Consensus 2 ~~Cp~Cgs~~i~-~--D~~~G~~VCt~CG~Vl 30 (565)
++||+||+..+. + +.--.+..|.+|+--.
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcchhh
Confidence 479999997442 2 1234788999998644
No 201
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=47.23 E-value=23 Score=33.83 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.5
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999864
No 202
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=46.99 E-value=23 Score=32.67 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=27.0
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
..++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 173 ~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 173 VLPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp EECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 357899999999999999999999999854
No 203
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=46.72 E-value=12 Score=32.71 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=26.5
Q ss_pred cCCCC-CHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 231 HGLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 231 ~g~~~-t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
.|.++ |.+++|..+|||..|||+.|+.|..
T Consensus 34 pG~~LPser~La~~~gVSr~tVReAl~~L~~ 64 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVSKAYQELER 64 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35677 7999999999999999999999874
No 204
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=46.70 E-value=14 Score=31.08 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=25.9
Q ss_pred CCCC-CHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKF-SKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~-t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
|-.+ +..++|+.++||..|||+.|+.|..-
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr~al~~L~~~ 70 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIVNALRKLESA 70 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4455 89999999999999999999998743
No 205
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=46.63 E-value=20 Score=32.90 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=27.0
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
..++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 467899999999999999999999999754
No 206
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=46.13 E-value=6.1 Score=28.35 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=19.0
Q ss_pred CCCCCCCCC-ceecc-CCCceecCcccce
Q 008455 3 WCSSCARHV-TGHRP-YDSQLCCDRCGKV 29 (565)
Q Consensus 3 ~Cp~Cgs~~-i~~D~-~~G~~VCt~CG~V 29 (565)
.|.+|+.+. ..+.. .+|..+|..||.-
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHH
Confidence 688998763 34432 3688999999974
No 207
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=45.77 E-value=67 Score=27.23 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=27.1
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+-.+|+.+|+..++++.+|+.+.++.+.+-
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~ 77 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERG 77 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 457999999999999999999999999754
No 208
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=45.66 E-value=15 Score=32.61 Aligned_cols=40 Identities=10% Similarity=0.006 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 222 AALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+.+|||..-.+..+|.++||...+|+..+|++-+..|...
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456665433457899999999999999999999998754
No 209
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=45.03 E-value=18 Score=32.25 Aligned_cols=39 Identities=5% Similarity=-0.032 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 222 AALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+.+|||.+ .+-.+|.++||...+|+..+|++-+..+.+.
T Consensus 19 ~L~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 19 ILSILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34455543 4557899999999999999999999999754
No 210
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=44.90 E-value=26 Score=29.13 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=26.7
Q ss_pred CCCCCHhHHHHHh-ccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIV-HICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~-~Vse~TIrkR~kE~~~t 261 (565)
.-+.++.+|++.+ +++.+||.++++.+.+.
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~ 55 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEAD 55 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 3478999999999 99999999999999854
No 211
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=44.86 E-value=21 Score=28.84 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=26.1
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-..+..+|++.++|+.+||++.++.|.+.
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45899999999999999999999999754
No 212
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=44.71 E-value=6.5 Score=31.29 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=11.9
Q ss_pred CCCCCCCC-Cceecc---CCCceecCcccce
Q 008455 3 WCSSCARH-VTGHRP---YDSQLCCDRCGKV 29 (565)
Q Consensus 3 ~Cp~Cgs~-~i~~D~---~~G~~VCt~CG~V 29 (565)
.|.+|+.+ ...+.. ..| ++|..||.-
T Consensus 10 ~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~ 39 (71)
T 2kae_A 10 QCSNCSVTETIRWRNIRSKEG-IQCNACFIY 39 (71)
T ss_dssp CCSSSCCSCCSSCCCCSSSSC-CCSSHHHHH
T ss_pred cCCccCCCCCCccccCCCCCC-ccchHHHHH
Confidence 45555554 223332 223 555555554
No 213
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=44.01 E-value=19 Score=32.71 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 116 ~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
..-+-+.+|+|-. .+.|++..+||+.++++...|.+.+.+|.+.
T Consensus 12 ~yAlr~l~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 12 SVAVHSILYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHHHHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3444567788864 3678999999999999999999999999874
No 214
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=43.78 E-value=26 Score=30.14 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=32.9
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~ 274 (565)
..++++.+||..+|+|..++.+.++... -+|+.+|...
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~~-----G~tp~~y~~~ 128 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKATT-----GMTPKAWQQA 128 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHT-----SSCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 5679999999999999999999998876 6778888754
No 215
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=43.75 E-value=8.6 Score=29.55 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=16.4
Q ss_pred CCCCCCCCCCceeccCCCceecCcccceec
Q 008455 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (565)
Q Consensus 2 ~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vle 31 (565)
+.||.||... --..||..||.-=+
T Consensus 31 ~~c~~cG~~~------~pH~vc~~CG~Y~g 54 (60)
T 2zjr_Z 31 TECPQCHGKK------LSHHICPNCGYYDG 54 (60)
T ss_dssp EECTTTCCEE------CTTBCCTTTCBSSS
T ss_pred eECCCCCCEe------CCceEcCCCCcCCC
Confidence 4689998752 24558999996533
No 216
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=43.55 E-value=17 Score=30.30 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=23.8
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
..|.++||..++||+.||+.++..+..
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468899999999999999999887763
No 217
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=43.26 E-value=26 Score=31.44 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+=+-+ -.|+..|+++||+.+|||..||-..+.
T Consensus 18 Il~aA~~lf~-~~G~~~t~~~IA~~agvs~~tlY~~F~ 54 (196)
T 2qwt_A 18 VLEVAYDTFA-AEGLGVPMDEIARRAGVGAGTVYRHFP 54 (196)
T ss_dssp HHHHHHHHHH-HTCTTSCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHHH-hcCCCCCHHHHHHHhCCCHHHHHHHCC
Confidence 4444444443 357789999999999999999987663
No 218
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=43.21 E-value=26 Score=29.43 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=24.3
Q ss_pred CCHhHHHHHh-ccCHHHHHHHHHHHHcc
Q 008455 235 FSKSDIVKIV-HICEATLMKRLIEFENT 261 (565)
Q Consensus 235 ~t~~eIa~v~-~Vse~TIrkR~kE~~~t 261 (565)
+|+.+|++.+ +|+..||.++++.+.+.
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 3499999999 99999999999999854
No 219
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=42.76 E-value=10 Score=38.56 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=19.5
Q ss_pred CCCCCCCCCC-c-eecc---CCC--ceecCcccceec
Q 008455 2 VWCSSCARHV-T-GHRP---YDS--QLCCDRCGKVLE 31 (565)
Q Consensus 2 ~~Cp~Cgs~~-i-~~D~---~~G--~~VCt~CG~Vle 31 (565)
..||.||+.- + ++.. .+| .+.|+-||+-=.
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~ 219 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH 219 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEe
Confidence 3799999972 2 2221 356 689999988643
No 220
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=42.71 E-value=19 Score=31.07 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=25.7
Q ss_pred CCCC-CHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 232 g~~~-t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
|.++ |.+++|...|||..|||+.|..|..
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr~Al~~L~~ 63 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566 5999999999999999999999974
No 221
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=42.69 E-value=26 Score=32.15 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=26.4
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+++|+.+||..+|++..|+.+-+++|.+-
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999854
No 222
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=42.59 E-value=30 Score=29.56 Aligned_cols=27 Identities=11% Similarity=0.357 Sum_probs=25.2
Q ss_pred CCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 235 FSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 235 ~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+|+.+||+.++++.+||++.++.+.+-
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~~ 78 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVKE 78 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999998754
No 223
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=42.49 E-value=16 Score=31.01 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=25.7
Q ss_pred CCCC-CHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 232 g~~~-t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
|.++ |.+++|..+|||..|||+.|+.|..
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr~al~~L~~ 59 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVSKAYQSLLD 59 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455 8999999999999999999999974
No 224
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=42.32 E-value=25 Score=29.63 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 008455 217 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (565)
Q Consensus 217 ~~IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~ 275 (565)
.-|.-+.-||-.... .++++.+||..+|+|+.++.+.+++ + .+|+.+|....
T Consensus 7 ~~~~~~~~~i~~~~~-~~~~~~~lA~~~~~S~~~l~r~fk~---~---G~s~~~~~~~~ 58 (120)
T 3mkl_A 7 NMRTRVCTVINNNIA-HEWTLARIASELLMSPSLLKKKLRE---E---ETSYSQLLTEC 58 (120)
T ss_dssp CHHHHHHHHHHTSTT-SCCCHHHHHHHTTCCHHHHHHHHHH---T---TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCCCHHHHHHHHCcCHHHHHHHHHH---c---CCCHHHHHHHH
Confidence 334445555554444 4799999999999999999998775 2 46888886553
No 225
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=42.03 E-value=24 Score=32.94 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=26.5
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-++|+.+||+.+|+|.+||+++++.+.+.
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~ 60 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEA 60 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47999999999999999999999999754
No 226
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=41.95 E-value=8.4 Score=39.86 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=14.5
Q ss_pred eecCcccceecccccccccccc
Q 008455 21 LCCDRCGKVLEDHNFSTEATFV 42 (565)
Q Consensus 21 ~VCt~CG~Vlee~~id~~~ef~ 42 (565)
..|.+||.|.-....+.+..|.
T Consensus 54 ~~C~~Cg~v~~~~~~~~~~~y~ 75 (416)
T 4e2x_A 54 GRCDSCEMVQLTEEVPRDLMFH 75 (416)
T ss_dssp EEETTTCCEEESSCCCHHHHSS
T ss_pred EECCCCCceeecCcCCHHHhcc
Confidence 4799999998765544433343
No 227
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=41.90 E-value=54 Score=27.94 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=27.6
Q ss_pred hcCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 230 ~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.++ .+|+.+||..++++.+|+.+.++.+.+-
T Consensus 51 ~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 51 SAS-DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp HSS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 344 8999999999999999999999999854
No 228
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=41.57 E-value=6.8 Score=30.45 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=18.3
Q ss_pred CCCCCCCC-Cceecc-CCCceecCcccceec
Q 008455 3 WCSSCARH-VTGHRP-YDSQLCCDRCGKVLE 31 (565)
Q Consensus 3 ~Cp~Cgs~-~i~~D~-~~G~~VCt~CG~Vle 31 (565)
.|.+||.+ ...+.. .+|..+|..||.-..
T Consensus 9 ~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~ 39 (63)
T 3dfx_A 9 SCANCQTTTTTLWRRNANGDPVCNACGLYYK 39 (63)
T ss_dssp CCTTTCCSCCSSCCCCTTSCCCCHHHHHHHH
T ss_pred cCCCcCCCCCCccCCCCCCCchhhHHHHHHH
Confidence 57888876 334432 357778888887654
No 229
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=41.55 E-value=1.5e+02 Score=30.96 Aligned_cols=25 Identities=0% Similarity=-0.012 Sum_probs=18.0
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIE 257 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE 257 (565)
...|+.+||..+|||..|||+++..
T Consensus 379 e~~Tl~EIA~~lgiS~erVrqi~~r 403 (423)
T 2a6h_F 379 REHTLEEVGAFFGVTRERIRQIENK 403 (423)
T ss_dssp -----CHHHHSSSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6799999999999999999987643
No 230
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=41.53 E-value=31 Score=29.15 Aligned_cols=29 Identities=17% Similarity=0.067 Sum_probs=26.3
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
..+|+.+|++.++++.+||.+.++.+.+-
T Consensus 49 ~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 49 KEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 37999999999999999999999998753
No 231
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=41.18 E-value=27 Score=25.45 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=28.4
Q ss_pred CccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008455 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (565)
Q Consensus 133 p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~ 164 (565)
..+..+||..++++..++......+.+.|+..
T Consensus 13 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 35779999999999999999999999988864
No 232
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=41.11 E-value=7.2 Score=30.58 Aligned_cols=29 Identities=31% Similarity=0.633 Sum_probs=18.1
Q ss_pred CCCCCCCCCc-eec-cCCCceecCcccceec
Q 008455 3 WCSSCARHVT-GHR-PYDSQLCCDRCGKVLE 31 (565)
Q Consensus 3 ~Cp~Cgs~~i-~~D-~~~G~~VCt~CG~Vle 31 (565)
.|.+||.... .+. ..+|..+|..||....
T Consensus 11 ~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~ 41 (66)
T 4gat_A 11 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 41 (66)
T ss_dssp CCTTTCCCCCSSCEEETTTEEECHHHHHHHH
T ss_pred CCCCCCCCCCCcCCcCCCCCCccHHHHHHHH
Confidence 5888887632 332 1257788888887654
No 233
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=41.10 E-value=8.9 Score=30.17 Aligned_cols=28 Identities=29% Similarity=0.651 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCceec---cCCCceecCcccc
Q 008455 1 MVWCSSCARHVTGHR---PYDSQLCCDRCGK 28 (565)
Q Consensus 1 M~~Cp~Cgs~~i~~D---~~~G~~VCt~CG~ 28 (565)
|.+|.-||...-.+. ...|.+||.+|=.
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGpgvyICdeCI~ 48 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGPSVYICDECVD 48 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECSSCEEEHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCCCCChhHHHHH
Confidence 457999997632111 1246789999844
No 234
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=41.07 E-value=20 Score=30.07 Aligned_cols=25 Identities=4% Similarity=0.120 Sum_probs=22.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIE 257 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE 257 (565)
...|.++||...|||..||++++..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~r 62 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAK 62 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5799999999999999999987644
No 235
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=41.02 E-value=29 Score=29.86 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=25.7
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
-.+++.+||+.++|+.+||++.++.+.+
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999875
No 236
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=40.76 E-value=17 Score=31.54 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=25.7
Q ss_pred CCCC-CHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 232 g~~~-t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
|.++ |.+++|...|||..|||+.|+.|..
T Consensus 32 G~~lPse~~La~~~~vSr~tvr~Al~~L~~ 61 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVAKAYKELEA 61 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4456 8999999999999999999999874
No 237
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=40.63 E-value=46 Score=29.85 Aligned_cols=29 Identities=7% Similarity=-0.087 Sum_probs=26.6
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
.|.+..+||+.+|++..+|.+++++|.+.
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46889999999999999999999999875
No 238
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=40.58 E-value=7.9 Score=32.02 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=25.1
Q ss_pred CCC-CHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKF-SKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~-t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
..+ |..++|+.++||..||++.|+.|.+.
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al~~L~~~ 62 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLKSE 62 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTTTS
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 445 89999999999999999999988643
No 239
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=40.57 E-value=20 Score=30.65 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=24.0
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
...|.++||...|||+.||++++....
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999887765
No 240
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=40.51 E-value=27 Score=29.06 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=26.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-+.++.+|++.++++.+||.+.++.+.+.
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSG 65 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999998754
No 241
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=40.37 E-value=21 Score=35.11 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+-+.+ -.|+. .|+++||+.+||+..||-..+.
T Consensus 125 il~aa~~l~~-~~G~~~~T~~~IA~~AGvs~gtlY~yF~ 162 (311)
T 4ich_A 125 ILETAWRLIA-RRGYHNVRIHDIASELGTSNATIHYHFP 162 (311)
T ss_dssp HHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHH-HcCCccCCHHHHHHHhCCCchhHHHhCC
Confidence 4444444433 34765 8999999999999999977664
No 242
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=40.31 E-value=15 Score=36.95 Aligned_cols=26 Identities=12% Similarity=-0.012 Sum_probs=23.2
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIE 257 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE 257 (565)
.-+.|++|||+.+|||.+|+++.|+.
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn~ 32 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHCC
Confidence 34679999999999999999999974
No 243
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=40.27 E-value=23 Score=30.87 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=26.4
Q ss_pred CCCC-CHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKF-SKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~-t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
|.++ |.+++|..+|||..|||+.|+.|..-
T Consensus 25 G~~LPse~~La~~~gvSr~tVr~Al~~L~~~ 55 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATARNGLTLLVEA 55 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4566 89999999999999999999998743
No 244
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=40.16 E-value=27 Score=29.62 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=23.8
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
...|.++||...|+|+.||++++....
T Consensus 40 ~g~s~~EIA~~lgiS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 40 EDYSLSEIADTFNVSRQAVYDNIRRTG 66 (113)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 458999999999999999998887665
No 245
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=40.14 E-value=15 Score=37.34 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=7.9
Q ss_pred ceecCcccceec
Q 008455 20 QLCCDRCGKVLE 31 (565)
Q Consensus 20 ~~VCt~CG~Vle 31 (565)
..+|..||.-+-
T Consensus 253 ~e~C~~C~~YlK 264 (309)
T 2fiy_A 253 AETCPSCQGYLK 264 (309)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEcccccchHh
Confidence 457777776654
No 246
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=39.94 E-value=55 Score=29.64 Aligned_cols=47 Identities=11% Similarity=-0.058 Sum_probs=34.6
Q ss_pred chhHHHHHHHHHHHHhcC---CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 114 RTEQVQASCLYLACRQKS---KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 114 ~~~~vaAACLYiACR~e~---~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
+...-+|..|..-+...+ .|.+..+||+.+|++..+|.|..++|.+.
T Consensus 147 ~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 147 SLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 344444444444444433 48899999999999999999999999875
No 247
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=39.77 E-value=22 Score=32.74 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=26.5
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999754
No 248
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=39.71 E-value=17 Score=29.20 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=22.6
Q ss_pred CCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 235 FSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 235 ~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
.|+.+||..+||+..||.+.++.+.
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7899999999999999999887665
No 249
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=39.36 E-value=60 Score=29.59 Aligned_cols=29 Identities=3% Similarity=-0.024 Sum_probs=26.8
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
.|.+..+||+.+|++..+|.+..++|.+.
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 58899999999999999999999999774
No 250
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=39.11 E-value=36 Score=27.47 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=25.3
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
..|+.+||...||+..||.+.++.+...
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~~ 50 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGSN 50 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCCC
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhhc
Confidence 5799999999999999999999988754
No 251
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=39.09 E-value=28 Score=30.68 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=36.1
Q ss_pred CchhHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 113 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 113 R~~~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
.+...-+-+.+|+|-+ .+ + +..+||+.++++..-|.+.+.+|.+.
T Consensus 6 ~~~~yAl~~L~~La~~-~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 6 SRLAVAIHILSLISMD-EK-T-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp CHHHHHHHHHHHHHTC-SC-C-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhC-CC-C-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3445566688888854 34 4 99999999999999999999998873
No 252
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=39.04 E-value=80 Score=27.28 Aligned_cols=27 Identities=11% Similarity=0.045 Sum_probs=22.8
Q ss_pred ccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 134 FLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 134 ~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
.+..+||..++++..+|.+.+++....
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~~~~ 75 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRYYET 75 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 578999999999999999888776553
No 253
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=39.02 E-value=18 Score=32.13 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=24.0
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
...|.+|||..+||++.||++++..-.
T Consensus 108 ~g~s~~EIA~~lgis~~tV~~~l~rar 134 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVDTSEVETLVTEAL 134 (157)
T ss_dssp SCCCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468999999999999999999987655
No 254
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=39.02 E-value=13 Score=35.42 Aligned_cols=27 Identities=15% Similarity=0.460 Sum_probs=19.9
Q ss_pred CCCCCCCCCceeccCCCceecCcccceec
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vle 31 (565)
.|++||..... ......+|..||.|..
T Consensus 12 ~Cw~C~~~~~~--~~~~~~fC~~c~~~q~ 38 (207)
T 3bvo_A 12 RCWNCGGPWGP--GREDRFFCPQCRALQA 38 (207)
T ss_dssp BCSSSCCBCCS--SCSCCCBCTTTCCBCC
T ss_pred CCCCCCCCccc--ccccccccccccccCC
Confidence 69999975211 1356789999999875
No 255
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=38.92 E-value=10 Score=30.99 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.2
Q ss_pred CceecCcccceeccc
Q 008455 19 SQLCCDRCGKVLEDH 33 (565)
Q Consensus 19 G~~VCt~CG~Vlee~ 33 (565)
..++|+.||.|.++.
T Consensus 26 ~~y~C~vCGyvYD~~ 40 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEA 40 (81)
T ss_dssp CEEEETTTCCEEETT
T ss_pred ceEEeCCCCEEEcCC
Confidence 468999999998763
No 256
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=38.89 E-value=17 Score=29.11 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=26.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-..++.+|++.++++.+||.++++.+.+.
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999754
No 257
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=38.83 E-value=22 Score=30.58 Aligned_cols=38 Identities=11% Similarity=0.275 Sum_probs=30.4
Q ss_pred CCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHH
Q 008455 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 181 (565)
Q Consensus 131 ~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~R 181 (565)
..+.++.+||..+|++...|.+.|++. +| ..|..|+.+
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~---~G----------~tp~~y~~~ 128 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKAT---TG----------MTPKAWQQA 128 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH---TS----------SCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHH
Confidence 568999999999999999999988855 44 446777654
No 258
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=38.79 E-value=22 Score=30.79 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=23.8
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
...|.++||..+|||..||++++....
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456999999999999999999887654
No 259
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=38.46 E-value=39 Score=29.83 Aligned_cols=43 Identities=21% Similarity=0.165 Sum_probs=32.2
Q ss_pred CCChhHHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 213 GRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 213 GR~P~~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
+..|.-|.-||+=+-++ .|+ ..|+++||+.+|||..||-..+.
T Consensus 6 ~~~~~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~ 49 (192)
T 2zcm_A 6 HHMKDKIIDNAITLFSE-KGYDGTTLDDISKSVNIKKASLYYHYD 49 (192)
T ss_dssp --CHHHHHHHHHHHHHH-HCTTTCCHHHHHHHTTCCHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCChHHHHHHCC
Confidence 34556677777666553 577 58999999999999999987764
No 260
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=38.14 E-value=42 Score=31.25 Aligned_cols=30 Identities=7% Similarity=0.171 Sum_probs=26.9
Q ss_pred CC-CCCHhHHHHHhccCH-HHHHHHHHHHHcc
Q 008455 232 GL-KFSKSDIVKIVHICE-ATLMKRLIEFENT 261 (565)
Q Consensus 232 g~-~~t~~eIa~v~~Vse-~TIrkR~kE~~~t 261 (565)
.+ ++|+.+||..+|++. .|+.+-+++|.+-
T Consensus 166 ~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 166 TLDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred EeccCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 35 789999999999999 7999999999754
No 261
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=37.99 E-value=28 Score=28.74 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=26.0
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-+.++.+|++.++++.+||.+.++.+.+.
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~ 66 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSV 66 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45799999999999999999999999743
No 262
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=37.97 E-value=16 Score=36.12 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=22.1
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHH
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIE 257 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE 257 (565)
+.|++|||+.+|||.+|+++.|+.
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 468999999999999999999985
No 263
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=37.91 E-value=10 Score=32.88 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCceecc-CCCceecCcccceecccc
Q 008455 1 MVWCSSCARHVTGHRP-YDSQLCCDRCGKVLEDHN 34 (565)
Q Consensus 1 M~~Cp~Cgs~~i~~D~-~~G~~VCt~CG~Vlee~~ 34 (565)
|..||+||..+-+... ......|..||.-+-+..
T Consensus 5 ~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~~ 39 (148)
T 3p2a_A 5 NTVCTACMATNRLPEERIDDGAKCGRCGHSLFDGE 39 (148)
T ss_dssp EEECTTTCCEEEEESSCSCSCCBCTTTCCBTTCCC
T ss_pred EEECcccccccCCCCcccccCCcchhcCCccccCC
Confidence 3579999997544433 345678999999776543
No 264
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=37.71 E-value=34 Score=30.20 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=26.3
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-..++.+|++.++|+..|+.++++.|.+.
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~ 64 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEH 64 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999754
No 265
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=37.59 E-value=27 Score=28.93 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.6
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
..|..+||..++|+..||++-++.+..+
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~~~~ 60 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRYQET 60 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 4689999999999999999998887654
No 266
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=37.50 E-value=11 Score=33.10 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=18.7
Q ss_pred CCCCCCCCCceeccCCCceecCcccceec
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vle 31 (565)
.|+.||.-..+.....|.++| ||.-++
T Consensus 9 kC~~CGnivev~~~g~~~l~C--CG~~m~ 35 (126)
T 1vzi_A 9 KCEVCGNIVEVLNGGIGELVC--CNQDMK 35 (126)
T ss_dssp ECTTTCCEEEEEECCSSCEEE--TTEECE
T ss_pred EcCCCCeEEEEEcCCCcceec--CCcccc
Confidence 599998654444556677777 887655
No 267
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=37.47 E-value=75 Score=29.12 Aligned_cols=29 Identities=7% Similarity=-0.054 Sum_probs=26.7
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
.|.+..+||+.+|++..+|.|..++|.+.
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 57899999999999999999999999774
No 268
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.22 E-value=35 Score=26.67 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=26.1
Q ss_pred CCCCHhHHHHHh-----ccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIV-----HICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~-----~Vse~TIrkR~kE~~~t 261 (565)
-..|..+|+..+ +|+.+||.+-|+.|.+.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 579999999999 99999999999988753
No 269
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=37.12 E-value=46 Score=28.38 Aligned_cols=102 Identities=7% Similarity=0.036 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHH
Q 008455 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC 195 (565)
Q Consensus 116 ~~vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~ 195 (565)
..+..++-||--. ...++++.++|+.++++...|.+.|++. +| ..|..||.+.- .
T Consensus 11 ~~i~~~~~~i~~~-~~~~~sl~~lA~~~~~S~~~l~r~fk~~---~G----------~s~~~~l~~~R-----------l 65 (129)
T 1bl0_A 11 ITIHSILDWIEDN-LESPLSLEKVSERSGYSKWHLQRMFKKE---TG----------HSLGQYIRSRK-----------M 65 (129)
T ss_dssp HHHHHHHHHHHTT-TTSCCCCHHHHHHSSSCHHHHHHHHHHH---HS----------SCHHHHHHHHH-----------H
T ss_pred HHHHHHHHHHHHc-cCCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHHH-----------H
Confidence 3344455555433 3456999999999999999999888754 44 33555555331 0
Q ss_pred HHHHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccC-HHHHHHHHHHHHccCCCCCCHHHHHHH
Q 008455 196 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMAR 274 (565)
Q Consensus 196 ~~A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vs-e~TIrkR~kE~~~t~s~~Lt~~~f~~~ 274 (565)
.. |.-+|.. -..++.+||..+|.+ .....+.++... .+|+.+|++.
T Consensus 66 ~~------------------------A~~lL~~----~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yR~~ 112 (129)
T 1bl0_A 66 TE------------------------IAQKLKE----SNEPILYLAERYGFESQQTLTRTFKNYF-----DVPPHKYRMT 112 (129)
T ss_dssp HH------------------------HHHHHHH----CCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHTC
T ss_pred HH------------------------HHHHHHc----CCCCHHHHHHHHCCCCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 11 2222211 246889999999986 478888888887 6788999875
Q ss_pred H
Q 008455 275 K 275 (565)
Q Consensus 275 ~ 275 (565)
.
T Consensus 113 ~ 113 (129)
T 1bl0_A 113 N 113 (129)
T ss_dssp S
T ss_pred H
Confidence 3
No 270
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=37.10 E-value=28 Score=27.33 Aligned_cols=24 Identities=25% Similarity=0.211 Sum_probs=21.0
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~ 255 (565)
....|+.++|+.+||+.+||.+-+
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 456899999999999999999653
No 271
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=36.73 E-value=61 Score=26.97 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=35.9
Q ss_pred HHHHHHHhcCC-CccHHHHHhhh-ccChHHHHHHHHHHHHHhh
Q 008455 122 CLYLACRQKSK-PFLLIDFSNYL-NINVYELGAVYLQLCQVLY 162 (565)
Q Consensus 122 CLYiACR~e~~-p~tL~DIa~~~-~vsv~~Lgr~~~~L~~~L~ 162 (565)
-|..+|++.|. +.++.-||..+ +-++..|...|.+|.+.+.
T Consensus 43 ~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 43 VILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp HHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 46778999877 89999999999 4899999999999999775
No 272
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=36.69 E-value=35 Score=25.63 Aligned_cols=33 Identities=6% Similarity=0.103 Sum_probs=28.8
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~ 164 (565)
...++.|||..++++..++.....+..+.|...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999988888888753
No 273
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=36.65 E-value=32 Score=29.15 Aligned_cols=28 Identities=4% Similarity=0.057 Sum_probs=25.5
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+.+..+|++.++++.+||.+.++.+.+.
T Consensus 34 ~~~~~eLa~~lgis~stvs~~L~~L~~~ 61 (118)
T 2jsc_A 34 VCYPGQLAAHLGLTRSNVSNHLSCLRGC 61 (118)
T ss_dssp CCSTTTHHHHHSSCHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 5789999999999999999999999753
No 274
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=36.64 E-value=33 Score=32.28 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 225 YVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 225 ylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
|..+.-.|+.-+|+++|+.+|||+..|++.++-..
T Consensus 33 y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A~ 67 (189)
T 3mky_B 33 YASRLQNEFAGNISALADAENISRKIITRCINTAK 67 (189)
T ss_dssp HHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHHhc
Confidence 66777788999999999999999999999998654
No 275
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=36.49 E-value=41 Score=29.52 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=26.9
Q ss_pred CCCCCHhHHHHHh-ccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIV-HICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~-~Vse~TIrkR~kE~~~t 261 (565)
.-..+..++++.+ +|+..|+.++|++|.+.
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~ 67 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEAD 67 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHC
Confidence 4478999999999 99999999999999854
No 276
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=36.45 E-value=38 Score=31.70 Aligned_cols=31 Identities=3% Similarity=0.063 Sum_probs=27.6
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
+-.+|..++|..++||+.|||+=+.||....
T Consensus 24 ~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 24 NPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred CCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 4568999999999999999999999998654
No 277
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=36.35 E-value=1e+02 Score=25.57 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=26.9
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~ 70 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEES 70 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 457899999999999999999999998753
No 278
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=36.19 E-value=12 Score=29.54 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=5.0
Q ss_pred eecCcccceec
Q 008455 21 LCCDRCGKVLE 31 (565)
Q Consensus 21 ~VCt~CG~Vle 31 (565)
.+|+.||.|.+
T Consensus 8 y~C~vCGyiYd 18 (70)
T 1dx8_A 8 YECEACGYIYE 18 (70)
T ss_dssp EEETTTCCEEC
T ss_pred EEeCCCCEEEc
Confidence 44444444444
No 279
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=36.04 E-value=20 Score=35.53 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=20.8
Q ss_pred CCHhHHHHHhccCHHHHHHHHH
Q 008455 235 FSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 235 ~t~~eIa~v~~Vse~TIrkR~k 256 (565)
.|++|||+.+|||.+|+++.|+
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn 22 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 4799999999999999999998
No 280
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=35.87 E-value=46 Score=28.51 Aligned_cols=31 Identities=16% Similarity=-0.023 Sum_probs=26.0
Q ss_pred hcCCCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 230 THGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 230 ~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
+.....|+.+|++.+|+|..||.+.-+.+..
T Consensus 54 lL~~G~SyreIa~~tG~StaTIsRv~r~L~~ 84 (107)
T 3frw_A 54 MLTDKRTYLDISEKTGASTATISRVNRSLNY 84 (107)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCccHHHHHHHHHHHHc
Confidence 3334499999999999999999988888774
No 281
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=35.82 E-value=11 Score=28.04 Aligned_cols=26 Identities=31% Similarity=0.737 Sum_probs=16.0
Q ss_pred CCCCCCCCCCCceec---cCCCceecCcc
Q 008455 1 MVWCSSCARHVTGHR---PYDSQLCCDRC 26 (565)
Q Consensus 1 M~~Cp~Cgs~~i~~D---~~~G~~VCt~C 26 (565)
|.+|.-||...-.+. ...|..+|.+|
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGpgv~IC~eC 39 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGPSVYICDEC 39 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECSSCEEEHHH
T ss_pred CcEecCCCCCHHHhcccCCCCCCEehHHH
Confidence 357999997632111 12467888888
No 282
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=35.60 E-value=32 Score=31.19 Aligned_cols=30 Identities=7% Similarity=0.220 Sum_probs=26.9
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
.++|+.+||..+|++..|+.+-+++|.+-.
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 191 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEG 191 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 468999999999999999999999998553
No 283
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=35.50 E-value=24 Score=25.64 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=29.1
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
...|+.++|+.+||+..||.+-.+- ....+++.+.++..
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~i~~ 51 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN-----KYNPSLQLALKIAY 51 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT-----SCCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4689999999999999999876542 23456777766653
No 284
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=35.43 E-value=25 Score=26.78 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=21.0
Q ss_pred CCHhHHHHHhccCHHHHHHHHHH
Q 008455 235 FSKSDIVKIVHICEATLMKRLIE 257 (565)
Q Consensus 235 ~t~~eIa~v~~Vse~TIrkR~kE 257 (565)
++.++|+..+|||.+||.+..++
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 68999999999999999988875
No 285
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=35.40 E-value=16 Score=30.68 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=20.8
Q ss_pred CCCCCCCC--CceeccCCCceecCcccc
Q 008455 3 WCSSCARH--VTGHRPYDSQLCCDRCGK 28 (565)
Q Consensus 3 ~Cp~Cgs~--~i~~D~~~G~~VCt~CG~ 28 (565)
.||.|+.. .+.+++..|...|-.||.
T Consensus 39 ~CPfh~e~~pSf~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 39 LCPFHGEKTPSFSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred ECCCCCCCCCcEEEEcCCCEEEECCCCC
Confidence 69999864 466777788999999994
No 286
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=35.38 E-value=42 Score=28.48 Aligned_cols=29 Identities=7% Similarity=0.106 Sum_probs=26.3
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-.+|+.+|++.++++.+|+.+.++.+.+-
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~~ 74 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 36999999999999999999999999853
No 287
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.33 E-value=37 Score=27.60 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=28.2
Q ss_pred ccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008455 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (565)
Q Consensus 134 ~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~ 164 (565)
.+..+||+.+++++.+|......+.+.|++.
T Consensus 45 ~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 45 FTNQEIADALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999999999864
No 288
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=35.22 E-value=45 Score=27.79 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=25.8
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
-..++.+|++.++++.+||.+.++.|.+
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3689999999999999999999999975
No 289
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=35.20 E-value=74 Score=33.51 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=46.5
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhh--hccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHH
Q 008455 181 KFTDRLLPGGNKKVCDTARDILASMK--RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 243 (565)
Q Consensus 181 Rf~~~L~~~l~~~V~~~A~~Lv~~m~--~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v 243 (565)
.+|.+|.. ..+++....+.+++... ...+..+|+-.-|.-.|+|..|+..+..++.++|...
T Consensus 288 ~LC~~L~~-~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~ 351 (411)
T 4ell_A 288 TLCERLLS-EHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTA 351 (411)
T ss_dssp HHHHHHCT-TSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 44777741 23356666777666643 3478889999999999999999999988888888764
No 290
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=34.62 E-value=23 Score=28.99 Aligned_cols=29 Identities=14% Similarity=0.348 Sum_probs=26.1
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-+.+..+|++.+|++.+|+.+.++.+.+.
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 36899999999999999999999998853
No 291
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=34.54 E-value=28 Score=28.72 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=25.5
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
-+.++.+|++.++++.+||++.++.+.+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999999999874
No 292
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=34.53 E-value=17 Score=33.67 Aligned_cols=27 Identities=19% Similarity=0.621 Sum_probs=21.6
Q ss_pred CCCC--CCCCCceeccCCCceecCcccceec
Q 008455 3 WCSS--CARHVTGHRPYDSQLCCDRCGKVLE 31 (565)
Q Consensus 3 ~Cp~--Cgs~~i~~D~~~G~~VCt~CG~Vle 31 (565)
.||. |++.. .+..+|.+.|..||...+
T Consensus 45 aC~~~~CnKKv--~~~~~g~~~CekC~~~~~ 73 (181)
T 1l1o_C 45 ACPTQDCNKKV--IDQQNGLYRCEKCDTEFP 73 (181)
T ss_dssp BCCSTTCCCBC--EEETTTEEEETTTTEEES
T ss_pred CCCchhcCCcc--ccCCCCeEECCCCCCcCC
Confidence 5999 99874 345679999999998765
No 293
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=34.46 E-value=17 Score=27.79 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=19.7
Q ss_pred CCHhHHHHHhccCHHHHHHHHHH
Q 008455 235 FSKSDIVKIVHICEATLMKRLIE 257 (565)
Q Consensus 235 ~t~~eIa~v~~Vse~TIrkR~kE 257 (565)
+|.+++|..+|||..||.+-.+.
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 57899999999999999876553
No 294
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=34.27 E-value=95 Score=26.51 Aligned_cols=31 Identities=6% Similarity=0.129 Sum_probs=27.5
Q ss_pred cCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 231 ~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
++-.+|+.+|+..++++.+|+.+.++.+.+-
T Consensus 51 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 81 (150)
T 3fm5_A 51 QAEGVNQRGVAATMGLDPSQIVGLVDELEER 81 (150)
T ss_dssp STTCCCSHHHHHHHTCCHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 5556899999999999999999999998754
No 295
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=34.17 E-value=73 Score=24.75 Aligned_cols=44 Identities=2% Similarity=0.088 Sum_probs=31.4
Q ss_pred HhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 229 r~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
.+....+|+.++|+.+||+..||.+-.+- .....+++.+.++..
T Consensus 26 ~r~~~glsq~elA~~~gis~~~is~~e~g----~~~~~~~~~l~~la~ 69 (83)
T 2a6c_A 26 HLRNSGLTQFKAAELLGVTQPRVSDLMRG----KIDLFSLESLIDMIT 69 (83)
T ss_dssp HHHTTTCCHHHHHHHHTSCHHHHHHHHTT----CGGGCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC----CCCCCCHHHHHHHHH
Confidence 34456789999999999999999976542 111366777766654
No 296
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.07 E-value=13 Score=32.12 Aligned_cols=8 Identities=25% Similarity=1.057 Sum_probs=4.0
Q ss_pred ecCcccce
Q 008455 22 CCDRCGKV 29 (565)
Q Consensus 22 VCt~CG~V 29 (565)
.|..||.-
T Consensus 92 ~CP~Cgs~ 99 (119)
T 2kdx_A 92 VCEKCHSK 99 (119)
T ss_dssp CCSSSSSC
T ss_pred cCccccCC
Confidence 45555543
No 297
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=33.80 E-value=59 Score=24.32 Aligned_cols=32 Identities=13% Similarity=-0.060 Sum_probs=28.3
Q ss_pred CccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008455 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (565)
Q Consensus 133 p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~ 164 (565)
..+..+||..++++..++......+.+.|+..
T Consensus 26 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 26 DKTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 34889999999999999999999999988863
No 298
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=33.72 E-value=49 Score=29.66 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=26.4
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
.|.+..+||+.+|++..+|.|+.++|.+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999874
No 299
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=33.67 E-value=28 Score=30.35 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=28.0
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~ 274 (565)
...|+++|++.+|+|..||.+--+.+. ..+ +.|..+
T Consensus 74 ~G~syreIA~~~g~S~aTIsRv~r~L~-~g~-----~gy~~~ 109 (119)
T 3kor_A 74 QGYTYATIEQESGASTATISRVKRSLQ-WGN-----DAYTMI 109 (119)
T ss_dssp HTCCHHHHHHHHCCCHHHHHHHHHHHH-SSC-----SHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHh-cCC-----hHHHHH
Confidence 349999999999999999998777765 344 456554
No 300
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=33.67 E-value=35 Score=30.24 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHH
Q 008455 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 218 ~IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
-|.-||+=+-+. +|+..|+.+||+.+|||..||-..+.
T Consensus 19 ~Il~aA~~lf~~-~G~~~s~~~IA~~agvs~~tlY~~F~ 56 (194)
T 2q24_A 19 KILAAAVRVFSE-EGLDAHLERIAREAGVGSGTLYRNFP 56 (194)
T ss_dssp HHHHHHHHHHHH-HCTTCCHHHHHHHTTCCHHHHHHHCC
T ss_pred HHHHHHHHHHHh-cCcCCCHHHHHHHhCCChHHHHHHcC
Confidence 455555444443 57779999999999999999987653
No 301
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=33.45 E-value=29 Score=29.27 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=26.1
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-+.+..+|+..+|++.+||.+.++.+.+.
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~ 58 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDS 58 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 46799999999999999999999999744
No 302
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=33.43 E-value=83 Score=26.48 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=26.7
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+-+.|+.+||+.++++.+|+.+.++.+.+.
T Consensus 39 ~~~~t~~ela~~l~~~~stvs~~l~~L~~~ 68 (152)
T 1ku9_A 39 DKPLTISDIMEELKISKGNVSMSLKKLEEL 68 (152)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 357999999999999999999999988743
No 303
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=33.38 E-value=24 Score=26.39 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=19.2
Q ss_pred CCHhHHHHHhccCHHHHHHHH
Q 008455 235 FSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 235 ~t~~eIa~v~~Vse~TIrkR~ 255 (565)
.|+.++|+.+|||..||.+..
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 499999999999999999875
No 304
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=33.36 E-value=21 Score=31.37 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCceeccCCCceecCccccee
Q 008455 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (565)
Q Consensus 1 M~~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vl 30 (565)
|+.|+-=++....-....|.++|..||.-|
T Consensus 1 ~~~c~~~~ge~y~~~~~~GiY~C~~Cg~pL 30 (124)
T 2kao_A 1 MSFCSFFGGEVFQNHFEPGVYVCAKCSYEL 30 (124)
T ss_dssp CCCCCCCCSCTTTTCCCCCEEEESSSCCCC
T ss_pred CccccccccccccCCCCCEEEEeCCCCCcc
Confidence 677765444432222367999999999987
No 305
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=33.26 E-value=36 Score=34.25 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=27.4
Q ss_pred cCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 231 ~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+-.+|..++|+.++||+.||++.++.+.+.
T Consensus 16 ~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~ 46 (321)
T 1bia_A 16 NGEFHSGEQLGETLGMSRAAINKHIQTLRDW 46 (321)
T ss_dssp TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 4556899999999999999999999999763
No 306
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=33.24 E-value=18 Score=35.92 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=22.0
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIE 257 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE 257 (565)
.+.|++|||+.+|||.+|+++.|+.
T Consensus 9 ~~~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 9 RPLTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp -CCCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 3579999999999999999999864
No 307
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=33.06 E-value=1.4e+02 Score=24.82 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 122 CLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
+|++..+..+.|.+..+|+..++++...+.+...+|.+.
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 344444444458999999999999999999999998875
No 308
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=33.00 E-value=98 Score=27.29 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=27.4
Q ss_pred cCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 231 ~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
++-.+|+.+||..++++.+|+.+.++.+.+-
T Consensus 65 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 95 (166)
T 3deu_A 65 LPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK 95 (166)
T ss_dssp SCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 3567999999999999999999999988754
No 309
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=32.87 E-value=63 Score=24.79 Aligned_cols=21 Identities=5% Similarity=0.045 Sum_probs=17.1
Q ss_pred CCccHHHHHhhhccChHHHHH
Q 008455 132 KPFLLIDFSNYLNINVYELGA 152 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr 152 (565)
...|..++|..+||+...|.+
T Consensus 24 ~gltq~~lA~~~gvs~~~is~ 44 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAA 44 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHH
Confidence 346889999999999877765
No 310
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=32.72 E-value=28 Score=25.58 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=21.8
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIE 257 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE 257 (565)
...+|+.++|..+||+..||.+-.+-
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 34689999999999999999886543
No 311
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.68 E-value=53 Score=29.58 Aligned_cols=41 Identities=10% Similarity=-0.121 Sum_probs=32.4
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHH
Q 008455 215 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 215 ~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
+-.-|..||+=+.+..- ...|+++||+.+||+..||-..+.
T Consensus 21 ~r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~ 61 (215)
T 2hku_A 21 TRDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYYG 61 (215)
T ss_dssp HHHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcC
Confidence 34456667776666655 789999999999999999987764
No 312
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=32.67 E-value=44 Score=26.87 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=26.3
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
|..+|+.+||+.++++.+|+.+.++.|.+-
T Consensus 28 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 57 (95)
T 2qvo_A 28 GNDVYIQYIASKVNSPHSYVWLIIKKFEEA 57 (95)
T ss_dssp TCCEEHHHHHHHSSSCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345899999999999999999999988753
No 313
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=32.63 E-value=35 Score=32.27 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=25.1
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
...|.++||..+++|+.||+.+++.+..
T Consensus 187 ~g~s~~eIa~~l~is~~tV~~~~~~~~~ 214 (234)
T 1l3l_A 187 VGKTMEEIADVEGVKYNSVRVKLREAMK 214 (234)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5679999999999999999999988763
No 314
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=32.62 E-value=18 Score=30.44 Aligned_cols=22 Identities=23% Similarity=0.733 Sum_probs=17.4
Q ss_pred CCCCCCCCCceeccCCCceecCcccc
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGK 28 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~ 28 (565)
.|+.||....-.+ -..|..||+
T Consensus 18 lCrRCG~~sfH~q----K~~CgkCGY 39 (97)
T 2zkr_2 18 LCRRCGSKAYHLQ----KSTCGKCGY 39 (97)
T ss_dssp CCTTTCSSCEETT----SCCBTTTCT
T ss_pred cCCCCCCccCcCc----cccCcccCC
Confidence 6999999865333 459999999
No 315
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=32.59 E-value=35 Score=27.71 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=22.7
Q ss_pred HhcCCCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 229 r~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
..++.+ +.+.|+.+||+..||.++++.+.
T Consensus 61 ~~~~gn--~~~aA~~LGIsr~tL~rklkk~~ 89 (91)
T 1ntc_A 61 RHTQGH--KQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHTTTC--TTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhCCC--HHHHHHHHCcCHHHHHHHHHHhC
Confidence 344444 45789999999999999998864
No 316
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=32.47 E-value=1.1e+02 Score=25.86 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=25.9
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+|+.+|++.++++.+|+.+.++.+.+-
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~Le~~ 83 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRMERN 83 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 7999999999999999999999998753
No 317
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=32.47 E-value=35 Score=29.07 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=26.5
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+-+.++.+|++.+|++.+||.+.++.+.+.
T Consensus 54 ~~~~s~~eLa~~l~is~stvs~~L~~L~~~ 83 (122)
T 1u2w_A 54 DEELCVCDIANILGVTIANASHHLRTLYKQ 83 (122)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999743
No 318
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=32.23 E-value=1.7e+02 Score=24.15 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=26.2
Q ss_pred CccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 133 PFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 133 p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
|.++.+||+.++++..++.+....|.+.
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 8999999999999999999999998875
No 319
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=31.94 E-value=38 Score=28.75 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=24.8
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
..|..+||..+||+..||++-++.+...
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~~~~ 49 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDPVSY 49 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSGGGT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHccccc
Confidence 4689999999999999999999888654
No 320
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=31.90 E-value=29 Score=25.63 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=21.5
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
...+|+.++|+.+||+..||.+-.+
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3568999999999999999988655
No 321
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=31.81 E-value=28 Score=26.29 Aligned_cols=39 Identities=8% Similarity=0.003 Sum_probs=30.3
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
..+|+.++|+.+||+..||.+-.+- ....+++.+..+..
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g-----~~~~~~~~l~~ia~ 58 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN-----DVQPSLETLFDIAE 58 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 3579999999999999999986542 23577888777764
No 322
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=31.78 E-value=56 Score=28.90 Aligned_cols=28 Identities=0% Similarity=0.051 Sum_probs=25.9
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+|+.+|++.++++.+|+.+.++.+.+-
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le~~ 86 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 7999999999999999999999998753
No 323
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=31.71 E-value=23 Score=27.40 Aligned_cols=40 Identities=10% Similarity=0.059 Sum_probs=29.4
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
....|+.++|+.+||+..||.+-.+- ....+++.+.++..
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~g-----~~~~~~~~~~~ia~ 62 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFNG-----INALNAYNAALLAK 62 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 34679999999999999999976542 23456666666653
No 324
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=31.67 E-value=56 Score=27.86 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=25.9
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
-..++.+|++.+|++.+||.+.++.+.+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999999986
No 325
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=31.65 E-value=29 Score=25.34 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~ 275 (565)
...|+.++|+.+||+..||.+-.+- ....+++.+..+.
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~i~ 54 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS-----ETEPNGENLLALS 54 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCBHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC-----CCCCCHHHHHHHH
Confidence 4579999999999999999875432 2234566665554
No 326
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=31.65 E-value=71 Score=27.06 Aligned_cols=28 Identities=14% Similarity=0.231 Sum_probs=23.0
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+|+.+||..++++.+|+.+.++.+.+-
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRELEGR 78 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHHHHT
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 7999999999999999999999998754
No 327
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=31.59 E-value=56 Score=29.34 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=26.4
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
.|.+..+||+.+|++..+|.|+.++|.+.
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 37899999999999999999999999874
No 328
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=31.43 E-value=62 Score=29.80 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=28.0
Q ss_pred CCCccHHHHHhhhccChHHHHHHHHHHHHHhhc
Q 008455 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (565)
Q Consensus 131 ~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i 163 (565)
..|.|..+||+.+|++..+|.|..++|.+. |+
T Consensus 176 ~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~-gi 207 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMKPESLSRAFSRLKAA-GV 207 (237)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGG-TE
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHC-Ce
Confidence 468889999999999999999999998774 45
No 329
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=31.39 E-value=57 Score=29.37 Aligned_cols=29 Identities=7% Similarity=-0.122 Sum_probs=26.5
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
.|.+..+||+.+|++..+|.+..++|.+.
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47889999999999999999999999874
No 330
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=31.14 E-value=53 Score=24.99 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=26.7
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHHhh
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~ 162 (565)
.+.+..|||+.++++..++.....+..+.|.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5689999999999999999887777777776
No 331
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=31.14 E-value=30 Score=26.09 Aligned_cols=40 Identities=3% Similarity=0.037 Sum_probs=29.3
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
...+|+.++|+.+||+..||.+-.+ .....+++.+..+..
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~-----g~~~~~~~~l~~la~ 60 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEVER-----GDRNISLINIHKICA 60 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT-----TCSCCBHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHC-----CCCCCCHHHHHHHHH
Confidence 3568999999999999999987543 223466777666643
No 332
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=31.05 E-value=1.2e+02 Score=25.59 Aligned_cols=28 Identities=7% Similarity=-0.038 Sum_probs=25.6
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+|+.+|+..++++.+|+.+.++.+.+-
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 72 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAGQ 72 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5999999999999999999999998753
No 333
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=31.04 E-value=44 Score=28.19 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=26.4
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-.+|+.+||+.++++.+|+.+.++.+.+-
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 58999999999999999999999998753
No 334
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=30.98 E-value=30 Score=26.15 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=30.1
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
....|+.++|+.+||+..||.+-.+- .....+++.+.++..
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~g----~~~~~~~~~l~~ia~ 58 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFEG----RSKRPTITTIRKVCG 58 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHCT----TCCCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC----CCCCCCHHHHHHHHH
Confidence 35689999999999999999875431 112567777777654
No 335
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.91 E-value=1.5e+02 Score=24.74 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=27.0
Q ss_pred cCCCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 231 ~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
.+-.+|+.+|++.++++.+|+.+.++.+.+
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 456799999999999999999999998874
No 336
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=30.90 E-value=1.6e+02 Score=24.68 Aligned_cols=30 Identities=3% Similarity=0.036 Sum_probs=27.1
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~ 77 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEM 77 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHC
Confidence 557999999999999999999999999754
No 337
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=30.85 E-value=43 Score=26.73 Aligned_cols=43 Identities=9% Similarity=0.002 Sum_probs=30.5
Q ss_pred HhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 229 r~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
.+....+|+.++|+.+||+..||.+-.+ .....+++.+.++..
T Consensus 17 ~r~~~glsq~~lA~~~gis~~~is~~e~-----G~~~p~~~~l~~ia~ 59 (94)
T 2kpj_A 17 YIAKSEKTQLEIAKSIGVSPQTFNTWCK-----GIAIPRMGKVQALAD 59 (94)
T ss_dssp HHTTSSSCHHHHHHHHTCCHHHHHHHHT-----TSCCCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHh-----CCCCCCHHHHHHHHH
Confidence 3445678999999999999999987543 223446666665543
No 338
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=30.77 E-value=22 Score=27.59 Aligned_cols=24 Identities=25% Similarity=0.721 Sum_probs=14.1
Q ss_pred CCCCCCCCCceeccCCCceecCcccc
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGK 28 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~ 28 (565)
.|..||...- .+ ....+-|..||.
T Consensus 23 ~C~~Cg~~~~-l~-~~~~iRC~~CG~ 46 (63)
T 3h0g_L 23 LCADCGARNT-IQ-AKEVIRCRECGH 46 (63)
T ss_dssp BCSSSCCBCC-CC-SSSCCCCSSSCC
T ss_pred ECCCCCCeee-cC-CCCceECCCCCc
Confidence 4777776532 22 235577777775
No 339
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=30.71 E-value=1.6e+02 Score=27.11 Aligned_cols=26 Identities=23% Similarity=0.102 Sum_probs=22.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEF 258 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~ 258 (565)
-..|..+||+.+||+.+|+.+.++..
T Consensus 174 ~G~s~~~Ia~~l~is~~tv~r~l~~~ 199 (209)
T 2r0q_C 174 EGQAISKIAKEVNITRQTVYRIKHDN 199 (209)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhcc
Confidence 34799999999999999999877643
No 340
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=30.69 E-value=40 Score=30.22 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=23.6
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
...|.++||...|+|+.||++++....
T Consensus 155 ~g~s~~EIA~~lgis~~tV~~~l~ra~ 181 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTVRSRIFRAR 181 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 458999999999999999999887654
No 341
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=30.60 E-value=67 Score=24.44 Aligned_cols=32 Identities=6% Similarity=-0.059 Sum_probs=28.3
Q ss_pred CccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008455 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (565)
Q Consensus 133 p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~ 164 (565)
..+..+||+.++++..++......+.+.|+..
T Consensus 31 g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 31 GLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999988863
No 342
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=30.41 E-value=52 Score=26.11 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=28.1
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHHhhc
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i 163 (565)
.+.++.+||..+++++.++.....+..+.|..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999988888888774
No 343
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.39 E-value=49 Score=28.61 Aligned_cols=28 Identities=7% Similarity=0.140 Sum_probs=25.9
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+|+.+|++.++++.+|+.+.++.+.+.
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~ 85 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 7999999999999999999999999753
No 344
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=30.29 E-value=74 Score=28.90 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=27.8
Q ss_pred CCCccHHHHHhhhccChHHHHHHHHHHHHHh
Q 008455 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVL 161 (565)
Q Consensus 131 ~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L 161 (565)
..|.+..+||+.+|++..+|.+..++|.+.=
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 206 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDEG 206 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4578999999999999999999999998853
No 345
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=30.21 E-value=48 Score=29.51 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 217 ~~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
.-|..||+=+.+. .|+ .+|+++||+.+||+..||=..+.
T Consensus 15 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 54 (189)
T 3vp5_A 15 NRVYDACLNEFQT-HSFHEAKIMHIVKALDIPRGSFYQYFE 54 (189)
T ss_dssp HHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-CCcccccHHHHHHHhCCChHHHHHHCC
Confidence 3455666655554 677 68999999999999999976654
No 346
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=30.14 E-value=71 Score=29.53 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=26.5
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
.|.+..+||+.+|++..+|.|+.++|.+.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 47899999999999999999999999774
No 347
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=30.06 E-value=2e+02 Score=23.55 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=34.8
Q ss_pred CCCChhHHHH---HHHHHHHHhcCCCCCHhHHHHHh-ccCHHHHHHHHHHHHc
Q 008455 212 TGRKPSGLCG---AALYVSALTHGLKFSKSDIVKIV-HICEATLMKRLIEFEN 260 (565)
Q Consensus 212 ~GR~P~~Iaa---AALylAar~~g~~~t~~eIa~v~-~Vse~TIrkR~kE~~~ 260 (565)
.+++...|+- -|.||+-.+. ..|+.+|+..+ |...+||...++-+.+
T Consensus 23 s~~R~~~i~~aRqiamyL~r~~t--~~Sl~~IG~~fggrdHsTV~ha~~ki~~ 73 (94)
T 1j1v_A 23 SKRRSRSVARPRQMAMALAKELT--NHSLPEIGDAFGGRDHTTVLHACRKIEQ 73 (94)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHTTSCCHHHHHHHHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHHH--CcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4444445544 3678877664 57899999999 8999999988887763
No 348
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=29.92 E-value=42 Score=28.02 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=25.7
Q ss_pred CCCCHhHHHHHh-ccCHHHHHHHHHHHHc
Q 008455 233 LKFSKSDIVKIV-HICEATLMKRLIEFEN 260 (565)
Q Consensus 233 ~~~t~~eIa~v~-~Vse~TIrkR~kE~~~ 260 (565)
-+.++.+|++.+ +|+..|+.++++.+.+
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 368999999999 9999999999999874
No 349
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=29.92 E-value=50 Score=28.64 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+=+-+. +|+. .|+++||+.+|||..||=..+.
T Consensus 13 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 50 (188)
T 3qkx_A 13 IFSATDRLMAR-EGLNQLSMLKLAKEANVAAGTIYLYFK 50 (188)
T ss_dssp HHHHHHHHHHH-SCSTTCCHHHHHHHHTCCHHHHHHHSS
T ss_pred HHHHHHHHHHh-cCcccCCHHHHHHHhCCCcchHHHHcC
Confidence 55555555443 6775 9999999999999999987764
No 350
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=29.86 E-value=2.1e+02 Score=23.83 Aligned_cols=74 Identities=9% Similarity=0.054 Sum_probs=43.5
Q ss_pred CccHHHHHhhhccChHHHHH-----------HHHHHHHHhhccccccccc--cCCchhhHHHHHHhhCCCCCHHHHHHHH
Q 008455 133 PFLLIDFSNYLNINVYELGA-----------VYLQLCQVLYIADESNVLK--QVDPSIFLHKFTDRLLPGGNKKVCDTAR 199 (565)
Q Consensus 133 p~tL~DIa~~~~vsv~~Lgr-----------~~~~L~~~L~i~~~~~~~~--~vdP~~~I~Rf~~~L~~~l~~~V~~~A~ 199 (565)
..|..++|..+||+...|.+ .+.+|++.|+++....+.. ..........+...+. .++++-.....
T Consensus 25 glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~~~~~~i~ 103 (126)
T 3ivp_A 25 GLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKSTKRRQLENKID-NFTDADLVIME 103 (126)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSCCCCCCCCHHHHHHHHHTT-TCCHHHHHHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhCCCccccchHHHHHHHHHHH-cCCHHHHHHHH
Confidence 45777888888887777765 3556777777653321111 1112334445555552 37777777777
Q ss_pred HHHHHhhh
Q 008455 200 DILASMKR 207 (565)
Q Consensus 200 ~Lv~~m~~ 207 (565)
.+++.+..
T Consensus 104 ~~i~~l~~ 111 (126)
T 3ivp_A 104 SVADGIVK 111 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 351
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=29.72 E-value=47 Score=29.54 Aligned_cols=41 Identities=12% Similarity=0.266 Sum_probs=26.6
Q ss_pred ChhHHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHH
Q 008455 215 KPSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 215 ~P~~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~ 255 (565)
+-.-|..||+=+-..-+|+ ..|+++||+.+|||..||-..+
T Consensus 25 ~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 66 (212)
T 3nxc_A 25 RREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHF 66 (212)
T ss_dssp THHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHC
Confidence 3445666655543334576 5899999999999999997655
No 352
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=29.71 E-value=42 Score=28.30 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=26.3
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~ 72 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEES 72 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 36999999999999999999999999854
No 353
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=29.61 E-value=70 Score=25.14 Aligned_cols=32 Identities=6% Similarity=-0.014 Sum_probs=28.3
Q ss_pred CccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008455 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (565)
Q Consensus 133 p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~ 164 (565)
..+..+||+.++++..+|......+.+.|+..
T Consensus 36 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 36 GLPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 36889999999999999999999998888763
No 354
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=29.45 E-value=32 Score=26.27 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=26.6
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~ 275 (565)
..+|+.++|+.+||+..||.+-.+ .....+++.+.++.
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~-----g~~~p~~~~l~~ia 51 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQ-----SETAPVVVKYIAFL 51 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT-----CCSCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc-----CCCCCCHHHHHHHH
Confidence 468999999999999999987543 12234555555543
No 355
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=29.44 E-value=58 Score=28.42 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+=+.+. +|+. .|+++||+.+|||..||-..++
T Consensus 7 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 44 (194)
T 3bqz_B 7 ILGVAKELFIK-NGYNATTTGEIVKLSESSKGNLYYHFK 44 (194)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHHHTTCCHHHHHHHTS
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCC
Confidence 44455544443 6764 8999999999999999987764
No 356
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=29.42 E-value=43 Score=29.14 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=24.5
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
..+..+||..+||+..||++-++.+.+.
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~~~~ 75 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRYYET 75 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4689999999999999999998888654
No 357
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=29.39 E-value=56 Score=28.37 Aligned_cols=30 Identities=7% Similarity=0.012 Sum_probs=27.1
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+-.+++.+|++.++++.+||.+.++.+.+-
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 447999999999999999999999999854
No 358
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=29.29 E-value=52 Score=26.41 Aligned_cols=30 Identities=10% Similarity=-0.010 Sum_probs=26.2
Q ss_pred CCCCCHhHH----HHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDI----VKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eI----a~v~~Vse~TIrkR~kE~~~t 261 (565)
+-.+++.+| +..++++.+||.+.++.+.+-
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~ 53 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE 53 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Confidence 456899999 899999999999999999753
No 359
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=29.27 E-value=34 Score=25.47 Aligned_cols=40 Identities=3% Similarity=0.002 Sum_probs=29.7
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
....|+.++|+.+||+..||.+-.+ .....+++.+..+..
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e~-----g~~~~~~~~l~~l~~ 63 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVER-----GQRNVSLVNILKLAT 63 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT-----TCSCCBHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC-----CCCCCCHHHHHHHHH
Confidence 3568999999999999999987543 224567777776654
No 360
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=29.23 E-value=69 Score=27.25 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=30.7
Q ss_pred HHHHHHhcCCC-ccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 123 LYLACRQKSKP-FLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 123 LYiACR~e~~p-~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
+|.+....+-| .+..+||+.++++..++.+....|.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44444456667 899999999999999999988888763
No 361
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=29.18 E-value=18 Score=33.26 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=0.0
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccC
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~ 262 (565)
.+++|+.+||..+|+|..|+.+-+++|.+-.
T Consensus 162 ~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G 192 (213)
T 1o5l_A 162 TLPVTLEELSRLFGCARPALSRVFQELEREG 192 (213)
T ss_dssp -------------------------------
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4678999999999999999999999997543
No 362
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=29.09 E-value=60 Score=24.28 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=21.5
Q ss_pred CHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 236 SKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 236 t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
++...|+.+||+..|+.++++.+.-
T Consensus 34 n~~~aA~~LGisr~tL~rklkk~gi 58 (63)
T 3e7l_A 34 DLKRTAEEIGIDLSNLYRKIKSLNI 58 (63)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHhCC
Confidence 4667899999999999999998753
No 363
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=29.04 E-value=12 Score=33.00 Aligned_cols=17 Identities=29% Similarity=0.686 Sum_probs=13.8
Q ss_pred ccCCCceecCcccceec
Q 008455 15 RPYDSQLCCDRCGKVLE 31 (565)
Q Consensus 15 D~~~G~~VCt~CG~Vle 31 (565)
+-.+|.++|.+||.+..
T Consensus 94 ~V~EG~L~Cp~cgr~yp 110 (125)
T 3q87_A 94 DVVEGSLRCDMCGLIYP 110 (125)
T ss_dssp EEEEEEEEETTTCCEEE
T ss_pred EEEEEEEECCCCCCEee
Confidence 34579999999999853
No 364
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=28.98 E-value=25 Score=26.94 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=20.8
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
...|+.++|+.+||+..||.+--+
T Consensus 23 ~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 578999999999999999987543
No 365
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=28.79 E-value=55 Score=29.08 Aligned_cols=39 Identities=8% Similarity=0.151 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 217 ~~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
.-|..||+=+.+. .|+ ..|+++||+.+|||..||-..+.
T Consensus 17 ~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~ 56 (212)
T 3knw_A 17 QHILDSGFHLVLR-KGFVGVGLQEILKTSGVPKGSFYHYFE 56 (212)
T ss_dssp HHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-cCCccCCHHHHHHHhCCChHHHHHHCC
Confidence 4455566555554 576 68999999999999999987764
No 366
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=28.73 E-value=12 Score=37.05 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEF 258 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~ 258 (565)
-+.|++|||+.+|||.+|+++.|+.-
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln~~ 29 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNGN 29 (332)
T ss_dssp --------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHcCC
Confidence 35799999999999999999999863
No 367
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=28.69 E-value=3.8e+02 Score=25.35 Aligned_cols=140 Identities=13% Similarity=0.190 Sum_probs=76.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHcCCCC--hhHHHHHHHHHHHHHHhCccccCCchhH-HHHHHHHHHHHhcCC-CccHHHH
Q 008455 64 GASRERLMEKAFDDMRQMKNALNIGE--SDEIVHVAKRFYGIAVARNFTKGRRTEQ-VQASCLYLACRQKSK-PFLLIDF 139 (565)
Q Consensus 64 ~~srer~l~~a~~~I~~ia~~L~Lp~--~~~i~e~A~~iyk~a~~~~~~rGR~~~~-vaAACLYiACR~e~~-p~tL~DI 139 (565)
.++.-.....++..|..++..++... +......+..++-..+++.+..+|.... -+..|+...+..... ...+.+|
T Consensus 65 ~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l 144 (278)
T 4ffb_C 65 TDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELV 144 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34545556778888888888876541 1334445556666667766665553321 222333333333332 3445555
Q ss_pred Hhhhc-cChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHh---hCCCCCHHHHHHHHHHHHHhhh
Q 008455 140 SNYLN-INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDR---LLPGGNKKVCDTARDILASMKR 207 (565)
Q Consensus 140 a~~~~-vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~---L~~~l~~~V~~~A~~Lv~~m~~ 207 (565)
...+. =++.....+...|.+.+..-... .++|..++..++.. +..+-++.|...|..++-.+-+
T Consensus 145 ~~~l~~Knpkv~~~~l~~l~~~l~~fg~~----~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 145 IPFFEKKLPKLIAAAANCVYELMAAFGLT----NVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp GGGGGCSCHHHHHHHHHHHHHHHHHHTTT----TCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHhCCC----cCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 55554 35666665566665555421111 25566555554433 3345789999999988877653
No 368
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=28.62 E-value=36 Score=32.24 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=25.0
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
...|.++||...+||+.||+.+++.+..
T Consensus 189 ~g~s~~eIa~~l~is~~tV~~~~~~~~~ 216 (236)
T 2q0o_A 189 KGKTASVTANLTGINARTVQHYLDKARA 216 (236)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5679999999999999999999988763
No 369
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=28.59 E-value=1.1e+02 Score=27.86 Aligned_cols=29 Identities=0% Similarity=0.032 Sum_probs=26.5
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
.|.+..+||+.+|++..+|.|+.++|.+.
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999874
No 370
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=28.54 E-value=45 Score=29.09 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 217 ~~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
.-|..||+-+.+. .|+ ..|+++||+.+|||..||-..+.
T Consensus 13 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 52 (196)
T 3col_A 13 VKIQDAVAAIILA-EGPAGVSTTKVAKRVGIAQSNVYLYFK 52 (196)
T ss_dssp HHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHHh-cCcccCCHHHHHHHhCCcHHHHHHHhC
Confidence 4466666665554 477 59999999999999999976653
No 371
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=28.41 E-value=58 Score=28.82 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+=+-+ -.|+ ..|+.+||+.+|||..||=..+.
T Consensus 17 Il~aA~~lf~-e~G~~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 17 ILSASYELLL-ESGFKAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp HHHHHHHHHH-HHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHH-HcCcccccHHHHHHHcCCCHHHHHHHCC
Confidence 4445544443 3577 58999999999999999977663
No 372
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=28.25 E-value=46 Score=28.88 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=25.8
Q ss_pred CCCCHhHHHHHh-ccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIV-HICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~-~Vse~TIrkR~kE~~~t 261 (565)
-+.++.+|++.+ +|+..||.++++.|.+.
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~Le~~ 76 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQALEQD 76 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 468999999999 79999999999999743
No 373
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=28.23 E-value=44 Score=29.08 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=26.7
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+-.+++.+|++.++++.+||.+.++.+.+-
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 93 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQAD 93 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 347899999999999999999999998753
No 374
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=28.21 E-value=35 Score=25.55 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=27.9
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~ 275 (565)
...|+.++|+.+||+..||.+-.+- ....+++.+..+.
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~ia 54 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS-----ETEPNGENLLALS 54 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHH
Confidence 3579999999999999999876542 2345666666654
No 375
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=28.11 E-value=57 Score=28.37 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 217 ~~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
.-|..||+=+.+. .|+ ..|+++||+.+|||..||-+.+.
T Consensus 12 ~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 51 (195)
T 3ppb_A 12 QAILETALQLFVS-QGFHGTSTATIAREAGVATGTLFHHFP 51 (195)
T ss_dssp HHHHHHHHHHHHH-TCSTTSCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHh-cCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 3455566655554 676 58999999999999999987764
No 376
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=28.03 E-value=1.6e+02 Score=24.45 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=26.1
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-.+|+.+|+..++++.+|+.+.++.+.+.
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHC
Confidence 36899999999999999999999998754
No 377
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=27.86 E-value=36 Score=29.43 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHH
Q 008455 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 219 IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~ 255 (565)
|..||+=+.+. .|+ ..|+++||+.+||+..||=..+
T Consensus 17 Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F 53 (177)
T 3kkc_A 17 IYNAFISLLQE-NDYSKITVQDVIGLANVGRSTFYSHY 53 (177)
T ss_dssp HHHHHHHHTTT-SCTTTCCHHHHHHHHCCCHHHHTTTC
T ss_pred HHHHHHHHHHh-CChhHhhHHHHHHHhCCcHhhHHHHc
Confidence 44455544443 577 6899999999999999986544
No 378
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=27.77 E-value=79 Score=27.54 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=24.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-++|+.+||+.++++.+|+.+.++.+..-
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~ 79 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRD 79 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 46899999999999999999999998743
No 379
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.74 E-value=34 Score=27.81 Aligned_cols=26 Identities=19% Similarity=0.556 Sum_probs=15.6
Q ss_pred CCCCCCCCCceeccCCCceecCcccceec
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vle 31 (565)
.||.|+.. +.++ .+...|..||.-+.
T Consensus 4 ~CP~C~~~-l~~~--~~~~~C~~C~~~~~ 29 (81)
T 2jrp_A 4 TCPVCHHA-LERN--GDTAHCETCAKDFS 29 (81)
T ss_dssp CCSSSCSC-CEEC--SSEEECTTTCCEEE
T ss_pred CCCCCCCc-cccC--CCceECccccccCC
Confidence 68888876 3332 44555777766444
No 380
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=27.72 E-value=1.4e+02 Score=25.34 Aligned_cols=30 Identities=23% Similarity=0.102 Sum_probs=26.8
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+-.+++.+|++.++++.+|+.+.++.+.+-
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 347899999999999999999999999754
No 381
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=27.53 E-value=61 Score=28.58 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+=+.+. +|+ ..|+++||+.+|||..||-..+.
T Consensus 17 Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 54 (202)
T 3lwj_A 17 ILTCSLDLFIE-KGYYNTSIRDIIALSEVGTGTFYNYFV 54 (202)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHCSCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCchhHHHHcC
Confidence 44555544443 577 58999999999999999987664
No 382
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=27.50 E-value=27 Score=26.97 Aligned_cols=22 Identities=5% Similarity=0.022 Sum_probs=18.5
Q ss_pred CCccHHHHHhhhccChHHHHHH
Q 008455 132 KPFLLIDFSNYLNINVYELGAV 153 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~ 153 (565)
...++.|||..+||+..+|.++
T Consensus 8 ~~~t~~diA~~aGVS~sTVSr~ 29 (67)
T 2l8n_A 8 TAATMKDVALKAKVSTATVSRA 29 (67)
T ss_dssp -CCCHHHHHHHTTCCHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
Confidence 3578999999999999988864
No 383
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=27.43 E-value=38 Score=25.40 Aligned_cols=39 Identities=5% Similarity=0.046 Sum_probs=29.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
...|+.++|+.+||+..||.+-.+ .....+++.+..+..
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~-----g~~~~~~~~l~~ia~ 60 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCS-----NKSQPSLDMLVKVAE 60 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT-----TSSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc-----CCCCCCHHHHHHHHH
Confidence 468999999999999999987654 223456777766654
No 384
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=27.38 E-value=63 Score=28.20 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHH
Q 008455 216 PSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 216 P~~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~ 255 (565)
..-|..||+=+.+. +|+ ..|+++||+.+|||..||-+.+
T Consensus 12 r~~Il~aa~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F 51 (197)
T 3rd3_A 12 RQHLLDTGYRIMAV-KGFSGVGLNEILQSAGVPKGSFYHYF 51 (197)
T ss_dssp HHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHTTTC
T ss_pred HHHHHHHHHHHHHH-CCcccCCHHHHHHHhCCChhhHHHHc
Confidence 34455555555543 577 5899999999999999997654
No 385
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=27.37 E-value=1.2e+02 Score=25.79 Aligned_cols=29 Identities=7% Similarity=0.072 Sum_probs=26.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-.+|+.+|++.++++.+|+.+.++.+.+-
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~ 81 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRA 81 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 37999999999999999999999998743
No 386
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=27.37 E-value=2.2e+02 Score=22.52 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=23.7
Q ss_pred CccHHHHHhhhccChHH----HHHH-----------HHHHHHHhhccc
Q 008455 133 PFLLIDFSNYLNINVYE----LGAV-----------YLQLCQVLYIAD 165 (565)
Q Consensus 133 p~tL~DIa~~~~vsv~~----Lgr~-----------~~~L~~~L~i~~ 165 (565)
..|..++|..+|++... |.+. ..+|++.|+++.
T Consensus 14 glsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~ 61 (98)
T 3lfp_A 14 GISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPV 61 (98)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCG
T ss_pred CCCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCH
Confidence 46788999999999888 6553 445666666543
No 387
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=27.36 E-value=37 Score=26.32 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=29.7
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
..+|+.++|..+||+..||.+-.+- .....+++.+.++..
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G----~~~~p~~~~l~~ia~ 61 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN----LQTNPSIQFLEKVSA 61 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT----SCCCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC----CCCCCCHHHHHHHHH
Confidence 4589999999999999999875442 134567777766654
No 388
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=27.26 E-value=33 Score=27.44 Aligned_cols=29 Identities=24% Similarity=0.679 Sum_probs=19.7
Q ss_pred CCCCCC--CCCCCceeccCCCceecC-----ccccee
Q 008455 1 MVWCSS--CARHVTGHRPYDSQLCCD-----RCGKVL 30 (565)
Q Consensus 1 M~~Cp~--Cgs~~i~~D~~~G~~VCt-----~CG~Vl 30 (565)
+++||. |+...+ .++....+.|. .||.+.
T Consensus 25 ~~~CP~p~C~~~v~-~~~~~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 25 GVLCPRPGCGAGLL-PEPDQRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp SCCCCSSSCCCCCC-CCSCTTSBCTTSSSTTCCSCCE
T ss_pred cEECCCCCCCcccE-ECCCCCcCCCCCCCCCCCCCee
Confidence 468998 887643 33455668887 888753
No 389
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=27.24 E-value=59 Score=26.37 Aligned_cols=31 Identities=6% Similarity=-0.021 Sum_probs=28.0
Q ss_pred ccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008455 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (565)
Q Consensus 134 ~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~ 164 (565)
.+..+||..++++..+|.....++.+.|+..
T Consensus 43 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 43 LTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 5779999999999999999999999999864
No 390
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=27.22 E-value=77 Score=27.98 Aligned_cols=39 Identities=13% Similarity=-0.052 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 217 ~~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
.-|..||+=+.+. .|+ ..|+++||+.+|||..||-..+.
T Consensus 19 ~~Il~aa~~lf~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 58 (213)
T 2qtq_A 19 DLLLQTASNIMRE-GDVVDISLSELSLRSGLNSALVKYYFG 58 (213)
T ss_dssp HHHHHHHHHHHHH-HTSSCCCHHHHHHHHCCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHH-cCcccccHHHHHHHhCCChhhHhHhcC
Confidence 3355555555543 577 58999999999999999988774
No 391
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=27.13 E-value=58 Score=26.83 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=26.1
Q ss_pred CCCCCHhHHHHHh-ccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIV-HICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~-~Vse~TIrkR~kE~~~t 261 (565)
.-+.++.+|++.+ +++..||.++++.+.+.
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 66 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGK 66 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHC
Confidence 3468999999999 59999999999999854
No 392
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=27.06 E-value=91 Score=24.50 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=27.0
Q ss_pred CCCccHHHHHhhhccChHHHHHHHHHHHHHh
Q 008455 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVL 161 (565)
Q Consensus 131 ~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L 161 (565)
+-+.+..+||..++++..+|.+...+|.+.=
T Consensus 29 ~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 29 GKATTAHDLSGKLGTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp SSCEEHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4578999999999999999999988887743
No 393
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=26.97 E-value=62 Score=27.86 Aligned_cols=30 Identities=3% Similarity=0.107 Sum_probs=26.8
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+-.+++.+|+..++++.+|+.+.++.+.+-
T Consensus 55 ~~~~t~~ela~~l~i~~~tvs~~l~~Le~~ 84 (155)
T 3cdh_A 55 NDAMMITRLAKLSLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp CSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 347999999999999999999999998754
No 394
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=26.97 E-value=73 Score=26.99 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=25.8
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+++.+|++.++++.+||.+.++.+.+-
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 7899999999999999999999998743
No 395
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=26.87 E-value=38 Score=27.43 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=29.8
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
..+|+.++|+.+||+..||.+-.+- . .++++.+.++..
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G--~----~~s~~~l~kIa~ 73 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN--E----NVSLTVLLAICE 73 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT--C----CCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC--C----CcCHHHHHHHHH
Confidence 4689999999999999999876653 1 257777777754
No 396
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=26.84 E-value=63 Score=28.35 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+=+.+. .|+ ..|+++||+.+||+..||-..+.
T Consensus 19 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 56 (203)
T 3f1b_A 19 MLDAAVDVFSD-RGFHETSMDAIAAKAEISKPMLYLYYG 56 (203)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHCC
T ss_pred HHHHHHHHHHH-cCcccccHHHHHHHhCCchHHHHHHhC
Confidence 45555544443 576 68999999999999999987764
No 397
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=26.80 E-value=64 Score=28.35 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 218 ~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
-|..||+=+-++ +|+ ..|+++||+.+|||..||-..+.
T Consensus 15 ~Il~aA~~lf~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 53 (203)
T 3b81_A 15 ELANKIWDIFIA-NGYENTTLAFIINKLGISKGALYHYFS 53 (203)
T ss_dssp HHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHHHHHHH-cCcccCcHHHHHHHhCCCchhHHHHcC
Confidence 355555555543 577 58999999999999999976553
No 398
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=26.79 E-value=84 Score=26.48 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHHhCcc--ccCCchh---HHHHHHHHHHHHhcCCCccHHHHHhhhc--cChHH
Q 008455 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNF--TKGRRTE---QVQASCLYLACRQKSKPFLLIDFSNYLN--INVYE 149 (565)
Q Consensus 77 ~I~~ia~~L~Lp~~~~i~e~A~~iyk~a~~~~~--~rGR~~~---~vaAACLYiACR~e~~p~tL~DIa~~~~--vsv~~ 149 (565)
-+..+|..||++ ...+.. +++.....+. ..|+... ......+-+ ..+-..+..+|+..++ ++..+
T Consensus 24 s~~~ia~~lgis--~~Tv~r---~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~---~~~~~~s~~~i~~~lg~~~s~~t 95 (141)
T 1u78_A 24 SLHEMSRKISRS--RHCIRV---YLKDPVSYGTSKRAPRRKALSVRDERNVIRA---ASNSCKTARDIRNELQLSASKRT 95 (141)
T ss_dssp CHHHHHHHHTCC--HHHHHH---HHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH---HHHCCCCHHHHHHHTTCCSCHHH
T ss_pred CHHHHHHHHCcC--HHHHHH---HHHcccccCCcCCCCCCCcCCHHHHHHHHHH---HhCCCCCHHHHHHHHCCCccHHH
Confidence 367799999999 665544 3333222221 2354332 111222211 2223478899999988 67777
Q ss_pred HHHHHH
Q 008455 150 LGAVYL 155 (565)
Q Consensus 150 Lgr~~~ 155 (565)
|.+.+.
T Consensus 96 V~r~l~ 101 (141)
T 1u78_A 96 ILNVIK 101 (141)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776544
No 399
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=26.77 E-value=1.1e+02 Score=28.17 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=25.8
Q ss_pred CccHHHHHhhhccCh-HHHHHHHHHHHHH
Q 008455 133 PFLLIDFSNYLNINV-YELGAVYLQLCQV 160 (565)
Q Consensus 133 p~tL~DIa~~~~vsv-~~Lgr~~~~L~~~ 160 (565)
|++..+||+.+|++. .+|.|+.++|.+.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 789999999999999 7999999999774
No 400
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=26.65 E-value=76 Score=23.30 Aligned_cols=21 Identities=5% Similarity=0.197 Sum_probs=19.8
Q ss_pred CHhHHHHHhccCHHHHHHHHH
Q 008455 236 SKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 236 t~~eIa~v~~Vse~TIrkR~k 256 (565)
|+.++|+.+||+..||.+.++
T Consensus 15 s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 999999999999999999884
No 401
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=26.56 E-value=55 Score=30.19 Aligned_cols=28 Identities=7% Similarity=0.040 Sum_probs=24.0
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
....|.++||..+|||+.||++++....
T Consensus 201 ~~g~s~~EIA~~lgis~~~V~~~~~ra~ 228 (239)
T 1rp3_A 201 YEELPAKEVAKILETSVSRVSQLKAKAL 228 (239)
T ss_dssp TSCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3568999999999999999998886544
No 402
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=26.47 E-value=1e+02 Score=29.18 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=26.5
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
.|++..+||+.+|++..+|.|++++|.+.
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 37899999999999999999999999874
No 403
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=26.38 E-value=65 Score=23.74 Aligned_cols=30 Identities=10% Similarity=-0.016 Sum_probs=25.7
Q ss_pred ccHHHHHhhhccChHHHHHHHHHHHHHhhc
Q 008455 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (565)
Q Consensus 134 ~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i 163 (565)
.+..+||..+|++..++.+...+..+.|.-
T Consensus 32 ~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 32 LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 678999999999999999888887777763
No 404
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=26.28 E-value=61 Score=25.89 Aligned_cols=29 Identities=10% Similarity=0.014 Sum_probs=22.8
Q ss_pred ccHHHHHhhhccChHHHHHHHHHHHHHhh
Q 008455 134 FLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (565)
Q Consensus 134 ~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~ 162 (565)
.+..+||..+|++..+|.....+..+.|.
T Consensus 54 ~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 54 WSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 36789999999999998776666665554
No 405
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=26.24 E-value=66 Score=25.79 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=26.9
Q ss_pred CCCccHHHHHhhhccChHHHHHHHHHHHHHh
Q 008455 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVL 161 (565)
Q Consensus 131 ~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L 161 (565)
|.+.+..+||..++++..+|.+...+|.+.=
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G 55 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLAKKG 55 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3578999999999999999999988887743
No 406
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=26.22 E-value=5.2e+02 Score=26.16 Aligned_cols=29 Identities=10% Similarity=-0.083 Sum_probs=25.1
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
--.+..+++...+||..|+++.++++.+.
T Consensus 310 p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~ 338 (373)
T 2qc0_A 310 PYCRIQNLVESGLAKRQTASVYLKQLCDI 338 (373)
T ss_dssp SEEEHHHHHHTSSSCHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 34688899999999999999999998754
No 407
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.17 E-value=31 Score=25.84 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=9.2
Q ss_pred eecCcccceeccc
Q 008455 21 LCCDRCGKVLEDH 33 (565)
Q Consensus 21 ~VCt~CG~Vlee~ 33 (565)
.+|+.||.|.++.
T Consensus 4 y~C~~CGyvYd~~ 16 (55)
T 2v3b_B 4 WQCVVCGFIYDEA 16 (55)
T ss_dssp EEETTTCCEEETT
T ss_pred EEeCCCCeEECCC
Confidence 5778888777653
No 408
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=26.12 E-value=64 Score=27.67 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=25.9
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~Le~~ 78 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADRLEQK 78 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 6899999999999999999999999754
No 409
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=26.08 E-value=55 Score=27.70 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=26.1
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-.+|+.+|+..++++.+||.+.++.+.+-
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~ 70 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 37899999999999999999999998743
No 410
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=26.03 E-value=41 Score=28.30 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=25.7
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+|+.+|++.++++.+|+.+.++.+.+-
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~Le~~ 77 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARLERD 77 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 6999999999999999999999998753
No 411
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=25.93 E-value=1.1e+02 Score=24.34 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=32.9
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
...|+.++|..+||+..|+..++..+..-. ...+++.+..+..
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g~-~~p~~~~l~~la~ 55 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKGK-HAPDFEMANRLAK 55 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHTS-SCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCCC-CCCCHHHHHHHHH
Confidence 357999999999999999766666665433 4678888877764
No 412
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=25.88 E-value=55 Score=28.55 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=26.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-.+++.+|++.++|+.+||++.++.+...
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 81 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATM 81 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 45799999999999999999999998754
No 413
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=25.85 E-value=43 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.0
Q ss_pred CHhHHHHHhccCHHHHHHHHHHH
Q 008455 236 SKSDIVKIVHICEATLMKRLIEF 258 (565)
Q Consensus 236 t~~eIa~v~~Vse~TIrkR~kE~ 258 (565)
.+.+.|+.+||+..||.++++.+
T Consensus 56 N~s~AA~~LGISR~TLyrKLkk~ 78 (81)
T 1umq_A 56 NVSETARRLNMHRRTLQRILAKR 78 (81)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTS
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 46678999999999999999865
No 414
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=25.84 E-value=45 Score=28.18 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=23.4
Q ss_pred CCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 234 KFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
..|..+||+.++||++||.+-.+.|.
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kklG 64 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXSLG 64 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHHcC
Confidence 47899999999999999999888765
No 415
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=25.84 E-value=64 Score=33.13 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=28.4
Q ss_pred hcCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 230 ~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
..+-++|..+|++.+++|.+||.+++++|.+.
T Consensus 26 ~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 26 DQLGPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp HSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 34567999999999999999999999999863
No 416
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=25.78 E-value=79 Score=28.77 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=26.3
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
.|.+..+||+.+|++..+|.|..++|.+.
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46889999999999999999999999874
No 417
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=25.75 E-value=50 Score=31.53 Aligned_cols=29 Identities=10% Similarity=0.322 Sum_probs=26.6
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
|.+++..++|..+|||..|||..|+.|..
T Consensus 47 G~~L~e~~La~~lgVSr~~VReAL~~L~~ 75 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVREALRQLEA 75 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCeeCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999864
No 418
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=25.69 E-value=69 Score=28.39 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 218 ~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
-|..||+=+.+. .|+ ..|+++||+.+|||..||-+.+.
T Consensus 22 ~Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 60 (212)
T 1pb6_A 22 AILSAALDTFSQ-FGFHGTRLEQIAELAGVSKTNLLYYFP 60 (212)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHSS
T ss_pred HHHHHHHHHHHH-cCcchhhHHHHHHHHCCChhHHHHhCC
Confidence 355555555443 576 58999999999999999987764
No 419
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.68 E-value=28 Score=29.37 Aligned_cols=25 Identities=20% Similarity=0.694 Sum_probs=17.4
Q ss_pred CCCCCCCCCceeccCCCceecCccccee
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vl 30 (565)
.||.|+.. +.+ ..|...|..|+.-.
T Consensus 34 ~CP~Cq~e-L~~--~g~~~hC~~C~~~f 58 (101)
T 2jne_A 34 HCPQCQHV-LDQ--DNGHARCRSCGEFI 58 (101)
T ss_dssp BCSSSCSB-EEE--ETTEEEETTTCCEE
T ss_pred cCccCCCc-cee--cCCEEECccccchh
Confidence 79999876 334 35666688888743
No 420
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=25.67 E-value=1.2e+02 Score=25.62 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=26.7
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+-.+|+.+||+.++++.+|+.+.++.+.+-
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 77 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEKK 77 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 457999999999999999999999998743
No 421
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=25.64 E-value=86 Score=27.30 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=29.6
Q ss_pred ChhHHHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHH
Q 008455 215 KPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 215 ~P~~IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~ 255 (565)
+-.-|.-||+=+-+. +|+. .|+++||+.+|||..||-..+
T Consensus 12 ~r~~il~aa~~lf~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F 52 (196)
T 3he0_A 12 KRDQILAAAEQLIAE-SGFQGLSMQKLANEAGVAAGTIYRYF 52 (196)
T ss_dssp CHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCcchHHHhc
Confidence 344566666655553 4765 899999999999999997655
No 422
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=25.63 E-value=2e+02 Score=23.80 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=30.1
Q ss_pred HHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 123 LYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 123 LYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
|++..+..+-|.++.+||+.++++...+.+....|.+.
T Consensus 37 L~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 37 LGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp HHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 33333333368999999999999999999999998874
No 423
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=25.56 E-value=44 Score=31.81 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=25.7
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
...|.++||...+||+.||+..++.+...
T Consensus 189 ~G~s~~eIa~~l~is~~tV~~~~~~~~~k 217 (237)
T 3szt_A 189 VGKTYGEIGLILSIDQRTVKFHIVNAMRK 217 (237)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999888643
No 424
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=25.51 E-value=66 Score=26.63 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=27.9
Q ss_pred ccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008455 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (565)
Q Consensus 134 ~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~ 164 (565)
.+..|||+.+++++.+|......+.+.|++.
T Consensus 50 ~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 50 FLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 4779999999999999999999999999864
No 425
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=25.51 E-value=47 Score=27.13 Aligned_cols=24 Identities=4% Similarity=0.163 Sum_probs=21.1
Q ss_pred CCHhHHHHHhccCHHHHHHHHHHH
Q 008455 235 FSKSDIVKIVHICEATLMKRLIEF 258 (565)
Q Consensus 235 ~t~~eIa~v~~Vse~TIrkR~kE~ 258 (565)
.+++.||+.+||+++||.+.-..+
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~~~ 48 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKRDW 48 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HhhHHHHHHhCCCHHHHhhhhhhH
Confidence 579999999999999999977654
No 426
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=25.50 E-value=55 Score=26.14 Aligned_cols=32 Identities=6% Similarity=0.057 Sum_probs=28.2
Q ss_pred CccHHHHHhhhccChHHHHHHHHHHHHHhhcc
Q 008455 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (565)
Q Consensus 133 p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~ 164 (565)
..+..+||..++++..++......+.+.|+..
T Consensus 44 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 44 GYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp TCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 36789999999999999999999999988863
No 427
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=25.50 E-value=33 Score=25.40 Aligned_cols=13 Identities=31% Similarity=0.989 Sum_probs=9.8
Q ss_pred eecCcccceeccc
Q 008455 21 LCCDRCGKVLEDH 33 (565)
Q Consensus 21 ~VCt~CG~Vlee~ 33 (565)
.+|+.||.|.++.
T Consensus 3 ~~C~~CGyvYd~~ 15 (52)
T 1yk4_A 3 LSCKICGYIYDED 15 (52)
T ss_dssp EEESSSSCEEETT
T ss_pred EEeCCCCeEECCC
Confidence 5788888887753
No 428
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=25.43 E-value=81 Score=28.11 Aligned_cols=37 Identities=14% Similarity=-0.048 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+=+.+ -+|+. .|+.+||+.+|||..||-..+.
T Consensus 22 Il~aA~~l~~-~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 59 (218)
T 3gzi_A 22 LILAARNLFI-ERPYAQVSIREIASLAGTDPGLIRYYFG 59 (218)
T ss_dssp HHHHHHHHHH-TSCCSCCCHHHHHHHHTSCTHHHHHHHS
T ss_pred HHHHHHHHHH-HCCCCcCCHHHHHHHhCCCHHHHHHHcC
Confidence 4445544443 46875 8999999999999999988774
No 429
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=25.40 E-value=43 Score=25.75 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=29.3
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
....|+.++|..+||+..||.+-.+ .....+++.+.++..
T Consensus 22 ~~glsq~~lA~~~gis~~~i~~~e~-----g~~~~~~~~l~~ia~ 61 (82)
T 3s8q_A 22 EKGMTQEDLAYKSNLDRTYISGIER-----NSRNLTIKSLELIMK 61 (82)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT-----TCCCCBHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHC-----CCCCCCHHHHHHHHH
Confidence 3568999999999999999987543 223566777666653
No 430
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=25.40 E-value=71 Score=27.87 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+=+.+. +|+. .|+++||+.+|||..||-..++
T Consensus 12 Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~ 49 (199)
T 3qbm_A 12 VVAQAAALFNV-SGYAGTAISDIMAATGLEKGGIYRHFE 49 (199)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHHHHHH-hCcCcCCHHHHHHHhCCCccHHHHhCC
Confidence 44555554443 5765 8999999999999999976653
No 431
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=25.35 E-value=1.2e+02 Score=26.31 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=26.1
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-.+|+.+||..++++.+|+.+.++.+.+-
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 87 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLLAN 87 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 37999999999999999999999988743
No 432
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=25.24 E-value=42 Score=25.82 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=29.3
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
...|+.++|..+||+..||.+-.+- ....+++.+..+..
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g-----~~~~~~~~l~~l~~ 64 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENA-----ERRLDVIEFMDFCR 64 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 4589999999999999999876542 23567777766653
No 433
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=25.24 E-value=69 Score=28.36 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+=+.+. .|+. .|+++||+.+|||..||-..+.
T Consensus 19 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 56 (220)
T 3lhq_A 19 ILDVALRLFSQ-QGVSATSLAEIANAAGVTRGAIYWHFK 56 (220)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCceeehhhcC
Confidence 55555554443 5775 8999999999999999987764
No 434
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=25.17 E-value=54 Score=28.16 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=26.2
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-.+|+.+|++.++++.+|+.+.++.+.+-
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 82 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLISL 82 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46999999999999999999999998753
No 435
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=25.15 E-value=40 Score=27.51 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=20.6
Q ss_pred CCCHhHHHHHhccCHHHHHHHHH
Q 008455 234 KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 234 ~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
.++|.++|+.+||+++||..-.+
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred hcCHHHHHHHcCCCHHHHHHHHc
Confidence 78999999999999999997654
No 436
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=25.11 E-value=57 Score=29.88 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCCCCHhHHHHHhc--cCHHHHHHHHHHHH
Q 008455 218 GLCGAALYVSALTHGLKFSKSDIVKIVH--ICEATLMKRLIEFE 259 (565)
Q Consensus 218 ~IaaAALylAar~~g~~~t~~eIa~v~~--Vse~TIrkR~kE~~ 259 (565)
++.=|+||++ +.++|.++++++++ ++..+|+..+.+|.
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~ 49 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELN 49 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHH
Confidence 3455666653 78999999999999 99999999999998
No 437
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=25.07 E-value=64 Score=26.40 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=25.7
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
+-.+++++|+..++++..||.+.++-|.
T Consensus 34 ~~gi~qkeLa~~~~l~~~tvt~iLk~LE 61 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLPLTEINKILKNLE 61 (91)
T ss_dssp TTCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4579999999999999999999999885
No 438
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=25.07 E-value=55 Score=28.42 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+=+... +|+ ..|+++||+.+|||..||-..+.
T Consensus 13 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 50 (194)
T 2g7s_A 13 ILQCARTLIIR-GGYNSFSYADISQVVGIRNASIHHHFP 50 (194)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCchHHHHHcC
Confidence 45555555443 576 48999999999999999987764
No 439
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=25.05 E-value=53 Score=25.42 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=30.1
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
...+|+.++|+.+||+..||.+-.+- ....+++.+.++..
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~i~~ 62 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFENN-----PDNTTLTTFFKILQ 62 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHC-----GGGCBHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 35689999999999999999887653 12456777776654
No 440
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=25.00 E-value=1.2e+02 Score=27.60 Aligned_cols=45 Identities=11% Similarity=-0.009 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHh--------cCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 116 EQVQASCLYLACRQ--------KSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 116 ~~vaAACLYiACR~--------e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
..++...+.++-+. -..|.+..+||+.+|++..+|.|++++|.+.
T Consensus 150 ~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 150 AALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 34554555555442 2347899999999999999999999999874
No 441
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=24.94 E-value=44 Score=25.57 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=20.9
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
....|+.++|..+||+..||.+-.+
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3468999999999999999987543
No 442
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=24.91 E-value=71 Score=28.48 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHH
Q 008455 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 218 ~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~ 255 (565)
-|..||+=+-+. .|+ ..|+++||+.+|||..||=..+
T Consensus 15 ~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F 52 (212)
T 2ras_A 15 RLVDVAQAIVEE-RGGAGLTLSELAARAGISQANLSRYF 52 (212)
T ss_dssp HHHHHHHHHHHH-HTSSCCCHHHHHHHHTSCHHHHTTTC
T ss_pred HHHHHHHHHHHH-hCcccCcHHHHHHHhCCCHHHHHHHc
Confidence 355555554443 576 5899999999999999997654
No 443
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=24.74 E-value=16 Score=36.30 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=0.0
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIE 257 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE 257 (565)
-+.|++|||+.+|||.+|+++.|+.
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3579999999999999999999975
No 444
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=24.69 E-value=84 Score=30.23 Aligned_cols=47 Identities=6% Similarity=0.127 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHH
Q 008455 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (565)
Q Consensus 222 AALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~ 274 (565)
+.-||-..+ ..++|+.+||+.+|+|..++++.++... -+|+-+|...
T Consensus 8 ~~~~i~~~~-~~~~~~~~la~~~~~s~~~l~r~f~~~~-----g~s~~~~~~~ 54 (292)
T 1d5y_A 8 LLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDVT-----GHAIGAYIRA 54 (292)
T ss_dssp HHHHHHTTS-SSSCCCHHHHTTTSSCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred HHHHHHhCC-CCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 444555444 5689999999999999999999999876 5777888654
No 445
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=24.53 E-value=1.1e+02 Score=27.71 Aligned_cols=29 Identities=7% Similarity=0.154 Sum_probs=26.4
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
+-.+|+.+||..++++.+|+.+.++.+.+
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999998874
No 446
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=24.53 E-value=1.2e+02 Score=23.48 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=26.0
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
-+.+..|||+.++++..++.+....|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999988888774
No 447
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=24.52 E-value=69 Score=28.07 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+-+.+ -.|+. .|+++||+.+|||..||-..+.
T Consensus 22 Il~aa~~l~~-~~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 59 (206)
T 3kz9_A 22 LMEIALEVFA-RRGIGRGGHADIAEIAQVSVATVFNYFP 59 (206)
T ss_dssp HHHHHHHHHH-HSCCSSCCHHHHHHHHTSCHHHHHHHCC
T ss_pred HHHHHHHHHH-hcCcccccHHHHHHHhCCCHHHHHHHcC
Confidence 5555555544 36876 8999999999999999977664
No 448
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=24.46 E-value=62 Score=29.61 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=26.4
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
.|.+..+||+.+|++..+|.++.++|.+.
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999774
No 449
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=24.46 E-value=85 Score=27.77 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 217 ~~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
.-|..||+=+.+. .|+ ..|+++||+.+|||..||-..+.
T Consensus 20 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 59 (207)
T 2rae_A 20 DRISTVGIELFTE-QGFDATSVDEVAEASGIARRTLFRYFP 59 (207)
T ss_dssp HHHHHHHHHHHHH-HCTTTSCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCcchHhhhCC
Confidence 4455555555543 577 48999999999999999977664
No 450
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=24.29 E-value=71 Score=28.34 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHHH
Q 008455 218 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 218 ~IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~k 256 (565)
-|..||+=+.+ -.|+. +|+++||+.+|||..||=..+.
T Consensus 35 ~Il~aa~~l~~-~~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 73 (218)
T 3dcf_A 35 QIIKVATELFR-EKGYYATSLDDIADRIGFTKPAIYYYFK 73 (218)
T ss_dssp HHHHHHHHHHH-HTCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-HcCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 34455554444 36774 8999999999999999987764
No 451
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=24.29 E-value=16 Score=33.76 Aligned_cols=53 Identities=15% Similarity=0.061 Sum_probs=0.0
Q ss_pred ccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 208 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 208 ~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+...||.|.-.. ..+-.+-.+.....|..+||+.++|+.+|+.+.+++-...
T Consensus 133 ~G~~~Gr~~~~~~-~~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~~~~~ 185 (193)
T 3uj3_X 133 KGRIGGRPPKLTK-AEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp ------------------------------------------------------
T ss_pred hcccCCCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHhhhc
Confidence 3455788774221 1221222333344789999999999999999998876543
No 452
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=24.28 E-value=52 Score=25.15 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=18.0
Q ss_pred ccHHHHHhhhccChHHHHHHH
Q 008455 134 FLLIDFSNYLNINVYELGAVY 154 (565)
Q Consensus 134 ~tL~DIa~~~~vsv~~Lgr~~ 154 (565)
.|+.|||..+||+..+|.+++
T Consensus 1 ~T~~diA~~aGVS~sTVSrvL 21 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVI 21 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHH
Confidence 378999999999999988754
No 453
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=24.19 E-value=18 Score=32.27 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=10.7
Q ss_pred ceeccCCCceecCcccceec
Q 008455 12 TGHRPYDSQLCCDRCGKVLE 31 (565)
Q Consensus 12 i~~D~~~G~~VCt~CG~Vle 31 (565)
+.+....+...|.+||.+.+
T Consensus 62 L~i~~~p~~~~C~~CG~~~~ 81 (139)
T 3a43_A 62 IEFVEEEAVFKCRNCNYEWK 81 (139)
T ss_dssp EEEEEECCEEEETTTCCEEE
T ss_pred EEEEecCCcEECCCCCCEEe
Confidence 33334455666666666544
No 454
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=24.14 E-value=49 Score=28.94 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHH
Q 008455 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 218 ~IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
-|..||+=+.+.. ...|+.+||+.+||+..||-..+.
T Consensus 18 ~Il~aA~~lf~~~--~~~t~~~Ia~~agvs~~t~Y~~F~ 54 (190)
T 2v57_A 18 AILDAAMLVLADH--PTAALGDIAAAAGVGRSTVHRYYP 54 (190)
T ss_dssp HHHHHHHHHHTTC--TTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHhCCCHHHHHHHcC
Confidence 3455555444443 779999999999999999987764
No 455
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=24.10 E-value=48 Score=24.48 Aligned_cols=40 Identities=5% Similarity=-0.051 Sum_probs=30.2
Q ss_pred CCCCCHhHHHHHhc--cCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVH--ICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 232 g~~~t~~eIa~v~~--Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
....|+.++|..+| |+..||.+-.+- ....+++.+..+..
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~g-----~~~~~~~~l~~la~ 60 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYERG-----DRAVTVQRLAELAD 60 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHHT-----CSCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 35689999999999 999999875542 23467777777654
No 456
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=24.04 E-value=78 Score=28.15 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHH
Q 008455 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 219 IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~ 255 (565)
|.-||+=+-+ -+|+. .|+.+||+.+|||..||=..+
T Consensus 14 Il~aA~~lf~-~~G~~~~t~~~Ia~~Agvs~gt~Y~yF 50 (204)
T 3anp_C 14 IFRAAMELFR-NRGFQETTATEIAKAAHVSRGTFFNYY 50 (204)
T ss_dssp HHHHHHHHHH-HHCTTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHH-HcCcccccHHHHHHHcCCchHHHHHHc
Confidence 4444444433 35775 899999999999999997655
No 457
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=24.00 E-value=1e+02 Score=25.62 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=26.7
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+-++|+.+|++.++++.+|+.+.++.+.+.
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 74 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRD 74 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 347999999999999999999999998754
No 458
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=23.89 E-value=45 Score=26.26 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=29.8
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
....|+.++|..+||+..||.+--+ .....+++.+..+..
T Consensus 25 ~~gltq~elA~~~gis~~~is~~E~-----G~~~p~~~~l~~ia~ 64 (86)
T 3eus_A 25 DAGLTQADLAERLDKPQSFVAKVET-----RERRLDVIEFAKWMA 64 (86)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHT-----TSSCCBHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHC-----CCCCCCHHHHHHHHH
Confidence 3568999999999999999987532 223567777776654
No 459
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.86 E-value=48 Score=31.88 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=24.8
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
...|.+|||..+|+|+.||+.++.-...
T Consensus 211 ~G~s~~EIA~~L~iS~~TVk~~l~ra~~ 238 (258)
T 3clo_A 211 KGLSSKEIAATLYISVNTVNRHRQNILE 238 (258)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5579999999999999999999987764
No 460
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=23.82 E-value=78 Score=28.24 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHH
Q 008455 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 219 IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~ 255 (565)
|..||+-+-++ +|+ ..|+++||+.+|||..||=..+
T Consensus 19 Il~aA~~lf~~-~G~~~~s~~~IA~~agvsk~tlY~yF 55 (199)
T 3crj_A 19 IMQATYRALRE-HGYADLTIQRIADEYGKSTAAVHYYY 55 (199)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCChhHHhhhc
Confidence 45555544443 576 5899999999999999996554
No 461
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=23.82 E-value=77 Score=28.23 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHH
Q 008455 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 219 IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~ 255 (565)
|..||+=+-+. .|+. .|+.+||+.+|||..||=..+
T Consensus 19 Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~tlY~~F 55 (204)
T 2ibd_A 19 LLDIAATLFAE-RGLRATTVRDIADAAGILSGSLYHHF 55 (204)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHTTSCHHHHHHHC
T ss_pred HHHHHHHHHHH-cCchhcCHHHHHHHhCCCchhHHHhc
Confidence 44444444443 5775 899999999999999997665
No 462
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=23.81 E-value=81 Score=28.31 Aligned_cols=37 Identities=24% Similarity=0.126 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+=+-+. .|+..|+++||+.+||+..||-..+.
T Consensus 17 Il~aA~~lf~~-~G~~~s~~~IA~~agvs~~tiY~~F~ 53 (224)
T 1t33_A 17 LIAAALAQFGE-YGLHATTRDIAALAGQNIAAITYYFG 53 (224)
T ss_dssp HHHHHHHHHHH-HGGGSCHHHHHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHHHHH-hCccccHHHHHHHhCCCHHHHHHhcC
Confidence 45555554443 46569999999999999999988774
No 463
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=23.73 E-value=52 Score=31.48 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=24.8
Q ss_pred CCCC-CHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 232 g~~~-t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
|.++ |..++|+..|||..|||+.|..|..
T Consensus 30 g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 59 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIRRAVDLLVE 59 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5567 7999999999999999999999974
No 464
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=23.66 E-value=61 Score=29.30 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 223 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 223 ALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
.+|||.. .+-.+|.++||...+|+...|+|-+..+...
T Consensus 18 l~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 18 ILYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3455543 4667999999999999999999999998754
No 465
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=23.66 E-value=73 Score=30.45 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=39.5
Q ss_pred CChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHH
Q 008455 214 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (565)
Q Consensus 214 R~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~ 274 (565)
+.+.-+.-+.-||-.... .++|+.++|+.+|+|+.++.+..+++ .+|+-+|...
T Consensus 166 ~~~~~~~~~~~~i~~~~~-~~~sl~~lA~~~~~S~~~l~r~fk~~------G~t~~~~l~~ 219 (276)
T 3gbg_A 166 DDLDAMEKISCLVKSDIT-RNWRWADICGELRTNRMILKKELESR------GVKFRELINS 219 (276)
T ss_dssp CTTCHHHHHHHHHHHTTT-SCCCHHHHHHHHTCCHHHHHHHHHTT------TCCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhc-CCCCHHHHHHHHCcCHHHHHHHHHHc------CCCHHHHHHH
Confidence 344445555556655444 48999999999999999999998752 4677787654
No 466
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=23.63 E-value=60 Score=27.90 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=26.2
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~ 260 (565)
+-.+|+.+||..++++.+||.+.++.+.+
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999998874
No 467
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=23.63 E-value=1.5e+02 Score=24.84 Aligned_cols=29 Identities=10% Similarity=-0.022 Sum_probs=26.3
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-.+|+.+|+..++++.+|+.+.++.+.+-
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~ 78 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRK 78 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 57899999999999999999999998753
No 468
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=23.61 E-value=77 Score=28.97 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHH
Q 008455 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 219 IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~ 255 (565)
|..||+=+.+. .|+. .|+++||+.+||+..||=..+
T Consensus 35 Il~aA~~lf~~-~G~~~~t~~~IA~~Agvs~~t~Y~~F 71 (230)
T 2iai_A 35 LLSVAVQVFIE-RGYDGTSMEHLSKAAGISKSSIYHHV 71 (230)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHTTTC
T ss_pred HHHHHHHHHHH-cCccccCHHHHHHHHCCChhHHHHhC
Confidence 55555555553 5775 899999999999999986554
No 469
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=23.61 E-value=55 Score=29.42 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..|++-+-..-.|+ .+|+++||+.+||+..|+=..++
T Consensus 24 I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~ 62 (185)
T 3o60_A 24 LYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHK 62 (185)
T ss_dssp HHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 445555441123576 58999999999999999977654
No 470
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=23.55 E-value=80 Score=28.21 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHH
Q 008455 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 219 IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~ 255 (565)
|.-||+=+-+ -.|+. .|+.+||+.+|||..||=..+
T Consensus 15 Il~aA~~lf~-~~G~~~~s~~~IA~~aGvs~~t~Y~~F 51 (210)
T 3vib_A 15 LMLAALETFY-RKGIARTSLNEIAQAAGVTRDALYWHF 51 (210)
T ss_dssp HHHHHHHHHH-HHCTTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHH-HhCcccCCHHHHHHHHCcCHHHHHHHC
Confidence 4444444433 35774 899999999999999997665
No 471
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=23.51 E-value=81 Score=28.04 Aligned_cols=38 Identities=32% Similarity=0.285 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHH
Q 008455 217 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 217 ~~IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~ 255 (565)
.-|.-||+=+-++ .|+. .|+.+||+.+|||..||=..+
T Consensus 13 ~~Il~aA~~lf~~-~G~~~~s~~~Ia~~Agvskgt~Y~yF 51 (197)
T 2f07_A 13 EKILQAAIEVISE-KGLDKASISDIVKKAGTAQGTFYLYF 51 (197)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCchHHHHhC
Confidence 3455555554443 6775 899999999999999986655
No 472
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=23.50 E-value=61 Score=28.15 Aligned_cols=30 Identities=7% Similarity=0.131 Sum_probs=26.6
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+-.+|+.+||..++++.+|+.+.++.+.+-
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 91 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDE 91 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 356899999999999999999999998743
No 473
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=23.49 E-value=1.9e+02 Score=24.23 Aligned_cols=28 Identities=11% Similarity=-0.051 Sum_probs=22.9
Q ss_pred CccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 133 PFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 133 p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
|.++.+||+.++++...+.+...+|.+.
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRELEGR 78 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHHHHT
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 7899999999999999999999988774
No 474
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=23.41 E-value=77 Score=24.90 Aligned_cols=42 Identities=2% Similarity=-0.039 Sum_probs=31.4
Q ss_pred hcCCCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 230 ~~g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
.....+|+.++|+.+||+..||.+-.+- ....+++.+..+..
T Consensus 22 r~~~glsq~~lA~~~gis~~~is~~e~g-----~~~p~~~~l~~la~ 63 (91)
T 1x57_A 22 RQSKGLTQKDLATKINEKPQVIADYESG-----RAIPNNQVLGKIER 63 (91)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHHT-----CSCCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 3446789999999999999999876552 23467777776654
No 475
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=23.38 E-value=74 Score=28.04 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 218 ~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
-|..||+=+.+ -.|+ ..|+++||+.+||+..||-..+.
T Consensus 8 ~Il~aa~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 46 (185)
T 2yve_A 8 MILRTAIDYIG-EYSLETLSYDSLAEATGLSKSGLIYHFP 46 (185)
T ss_dssp HHHHHHHHHHH-HSCSTTCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-HcChhhccHHHHHHHhCCChHHHHHhCc
Confidence 35555554444 3677 58999999999999999988774
No 476
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=23.37 E-value=1.5e+02 Score=25.79 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHH
Q 008455 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (565)
Q Consensus 122 CLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~ 160 (565)
+|++.....+-+.++.+||+.++++...+.+...+|.+.
T Consensus 51 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 89 (168)
T 3u2r_A 51 TLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDR 89 (168)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 344444433568999999999999999999999998874
No 477
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=23.36 E-value=88 Score=28.15 Aligned_cols=32 Identities=6% Similarity=-0.037 Sum_probs=27.7
Q ss_pred CCccHHHHHhhhccChHHHHHHHHHHHHHhhc
Q 008455 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (565)
Q Consensus 132 ~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i 163 (565)
.|.+..+||+.+|++..+|.|+.++|.+.=-|
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I 193 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVV 193 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 46889999999999999999999999885333
No 478
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=23.36 E-value=38 Score=31.88 Aligned_cols=27 Identities=26% Similarity=0.664 Sum_probs=17.7
Q ss_pred CCCCCCCCCceeccCCCceecCccccee
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~Vl 30 (565)
.||.||...+--.+.+ -..|..||...
T Consensus 115 ~Cp~Cg~g~fma~h~d-R~~CGkC~~t~ 141 (189)
T 2xzm_9 115 GCPKCGPGIFMAKHYD-RHYCGKCHLTL 141 (189)
T ss_dssp ECSTTCSSCEEEECSS-CEEETTTCCCB
T ss_pred cCCccCCCccccCccC-CCccCCceeEE
Confidence 4888886654444433 45888888864
No 479
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=23.24 E-value=62 Score=27.23 Aligned_cols=27 Identities=4% Similarity=0.230 Sum_probs=23.9
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
...|..+||+.++||++||.+-.+.|.
T Consensus 34 ~~~si~elA~~~~vS~aTv~Rf~kkLG 60 (107)
T 3iwf_A 34 VNMTSQEIANQLETSSTSIIRLSKKVT 60 (107)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HHCCHHHHHHHHCCCHHHHHHHHHHhC
Confidence 357999999999999999999888775
No 480
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=23.19 E-value=79 Score=27.42 Aligned_cols=39 Identities=8% Similarity=0.232 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHH
Q 008455 216 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 255 (565)
Q Consensus 216 P~~IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~ 255 (565)
-.-|..||+=+.+. .|+. .|+++||+.+|||..||-..+
T Consensus 10 r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F 49 (183)
T 1zk8_A 10 LQKIVETAAEIADA-NGVQEVTLASLAQTLGVRSPSLYNHV 49 (183)
T ss_dssp HHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHTTTC
T ss_pred HHHHHHHHHHHHHh-cCccccCHHHHHHHcCCCchHHHHHc
Confidence 34566566555543 5775 899999999999999987655
No 481
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=23.18 E-value=23 Score=30.61 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=20.8
Q ss_pred CCCCCCCCC-ceec-cCCCceecCcccceec
Q 008455 3 WCSSCARHV-TGHR-PYDSQLCCDRCGKVLE 31 (565)
Q Consensus 3 ~Cp~Cgs~~-i~~D-~~~G~~VCt~CG~Vle 31 (565)
.|.+||... ..+. ..+|.++|..||.+..
T Consensus 7 ~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~K 37 (115)
T 4hc9_A 7 ECVNCGATSTPLWRRDGTGHYLCNACGLYHK 37 (115)
T ss_dssp CCTTTCCSCCSSCEECTTSCEECHHHHHHHH
T ss_pred CCCCCCCccCCcceECCCCCCcCcchhhhhh
Confidence 699999763 3332 3468899999998653
No 482
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=23.16 E-value=21 Score=32.06 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=19.5
Q ss_pred CCCCCCCCCceecc-CCCceecCcccceec
Q 008455 3 WCSSCARHVTGHRP-YDSQLCCDRCGKVLE 31 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~-~~G~~VCt~CG~Vle 31 (565)
.|-.||...+.+-. .-|.++|..|.-|--
T Consensus 27 ~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR 56 (140)
T 2olm_A 27 KCFDCDQRGPTYVNMTVGSFVCTSCSGSLR 56 (140)
T ss_dssp SCTTTCSSCCCEEETTTTEEECHHHHHHHT
T ss_pred cCCCCCCCCCCceeeccCEEEchhccchhc
Confidence 57888877655433 348888888877653
No 483
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=23.10 E-value=57 Score=31.20 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=26.5
Q ss_pred CCCC-CHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKF-SKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~-t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
|.++ |..++|+..|||..|||+.|..|..-
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 56 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELLEQK 56 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5667 79999999999999999999998743
No 484
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=23.05 E-value=58 Score=25.82 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=28.4
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~ 275 (565)
..+|+.++|+.+||+..||.+-.+- ....+.+.+.++.
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g-----~~~~~~~~~~~i~ 57 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTG-----KAALTPEMAIKLS 57 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHT-----SSCCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC-----CCCCCHHHHHHHH
Confidence 4589999999999999999986652 2245666665554
No 485
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.03 E-value=1e+02 Score=27.45 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 217 ~~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
.-|..||+=+-+. .|+ ..|+++||+.+|||..||=..+.
T Consensus 11 ~~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 11 ARIFEAAVAEFAR-HGIAGARIDRIAAEARANKQLIYAYYG 50 (202)
T ss_dssp HHHHHHHHHHHHH-HTTTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 3455555544443 577 68999999999999999987764
No 486
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=23.02 E-value=32 Score=22.77 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=8.8
Q ss_pred CCceecCcccce
Q 008455 18 DSQLCCDRCGKV 29 (565)
Q Consensus 18 ~G~~VCt~CG~V 29 (565)
.|+.+|..||.+
T Consensus 3 ~gDW~C~~C~~~ 14 (32)
T 2lk0_A 3 FEDWLCNKCCLN 14 (32)
T ss_dssp CSEEECTTTCCE
T ss_pred CCCCCcCcCcCC
Confidence 477778777775
No 487
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=22.88 E-value=48 Score=24.77 Aligned_cols=24 Identities=8% Similarity=0.325 Sum_probs=20.7
Q ss_pred CHhHHHHHhccCHHHHHHHHHHHH
Q 008455 236 SKSDIVKIVHICEATLMKRLIEFE 259 (565)
Q Consensus 236 t~~eIa~v~~Vse~TIrkR~kE~~ 259 (565)
++...|+.+||+..|+.++++.+.
T Consensus 35 n~~~aA~~LGIsr~tL~rklkk~g 58 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLKQYG 58 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHHTTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHHhC
Confidence 567889999999999999998653
No 488
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=22.81 E-value=20 Score=31.94 Aligned_cols=28 Identities=18% Similarity=0.504 Sum_probs=15.3
Q ss_pred CCCCCCCCCceecc-CCCceecCccccee
Q 008455 3 WCSSCARHVTGHRP-YDSQLCCDRCGKVL 30 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~-~~G~~VCt~CG~Vl 30 (565)
.|-.||+..+.+-. .-|..+|..|.-|-
T Consensus 29 ~CaDCg~~~P~WaS~n~GvfiC~~CsgiH 57 (134)
T 2iqj_A 29 FCADCQSKGPRWASWNIGVFICIRCAGIH 57 (134)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHH
T ss_pred cCCcCcCCCCCeEEecCCEEEhHhhhHHH
Confidence 46666665543322 24666666665553
No 489
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=22.79 E-value=84 Score=27.45 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+=+.+. .|+ ..|+++||+.+||+..||-..+.
T Consensus 13 Il~aA~~l~~~-~G~~~~t~~~IA~~Agvs~~tly~~F~ 50 (194)
T 3dpj_A 13 IVAAADELFYR-QGFAQTSFVDISAAVGISRGNFYYHFK 50 (194)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHHCCChHHHHHHcC
Confidence 44455554443 577 58999999999999999977663
No 490
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=22.78 E-value=65 Score=27.93 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHHH
Q 008455 217 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 217 ~~IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~k 256 (565)
.-|.-||+=+-+. .|+. .|+++||+.+|||..||-..+.
T Consensus 13 ~~Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~ 52 (191)
T 3on4_A 13 ERILAVAEALIQK-DGYNAFSFKDIATAINIKTASIHYHFP 52 (191)
T ss_dssp HHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCcchhhhcCC
Confidence 3445555544443 5775 8999999999999999987764
No 491
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=22.77 E-value=70 Score=30.82 Aligned_cols=99 Identities=10% Similarity=0.077 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHhhhccChHHHHHHHHHHHHHhhccccccccccCCchhhHHHHHHhhCCCCCHHHHHH
Q 008455 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 197 (565)
Q Consensus 118 vaAACLYiACR~e~~p~tL~DIa~~~~vsv~~Lgr~~~~L~~~L~i~~~~~~~~~vdP~~~I~Rf~~~L~~~l~~~V~~~ 197 (565)
+..++-||--.. ..++++.++|..+++|...|.+.|++. +| ..|..||.+.-
T Consensus 5 ~~~~~~~i~~~~-~~~~~~~~la~~~~~s~~~l~r~f~~~---~g----------~s~~~~~~~~R-------------- 56 (292)
T 1d5y_A 5 IRDLLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDV---TG----------HAIGAYIRARR-------------- 56 (292)
T ss_dssp HHHHHHHHHTTS-SSSCCCHHHHTTTSSCHHHHHHHHHHH---HS----------SCHHHHHHHHH--------------
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHHH--------------
Confidence 344555554333 568999999999999999999987754 44 33555555331
Q ss_pred HHHHHHHhhhccccCCCChhHHHHHHHHHHHHhcCCCCCHhHHHHHhccC-HHHHHHHHHHHHccCCCCCCHHHHHHH
Q 008455 198 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMAR 274 (565)
Q Consensus 198 A~~Lv~~m~~~~l~~GR~P~~IaaAALylAar~~g~~~t~~eIa~v~~Vs-e~TIrkR~kE~~~t~s~~Lt~~~f~~~ 274 (565)
+.-|+-+|. .-..++.+||..+|-+ .....+.++... .+|+.+|++.
T Consensus 57 ---------------------l~~a~~~L~----~~~~~i~~ia~~~Gf~~~~~f~r~fk~~~-----g~~P~~~r~~ 104 (292)
T 1d5y_A 57 ---------------------LSKSAVALR----LTARPILDIALQYRFDSQQTFTRAFKKQF-----AQTPALYRRS 104 (292)
T ss_dssp ---------------------HHHHHHHHH----HCCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHHC
T ss_pred ---------------------HHHHHHHHh----cCCCCHHHHHHHcCCCCHHHHHHHHHHHH-----CcChHHHHHh
Confidence 111222221 1246788888888864 467888888877 6778888865
No 492
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=22.66 E-value=66 Score=28.12 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 217 ~~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
.-|..||+=+.+. +|+ ..|+++||+.+|||..||-..+.
T Consensus 11 ~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (206)
T 3dew_A 11 SRLMEVATELFAQ-KGFYGVSIRELAQAAGASISMISYHFG 50 (206)
T ss_dssp HHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHSC
T ss_pred HHHHHHHHHHHhc-CCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 3455555555443 577 69999999999999999987764
No 493
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=22.64 E-value=37 Score=31.17 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=17.0
Q ss_pred CCCCCCCCCceeccCCCceecCcccce
Q 008455 3 WCSSCARHVTGHRPYDSQLCCDRCGKV 29 (565)
Q Consensus 3 ~Cp~Cgs~~i~~D~~~G~~VCt~CG~V 29 (565)
.||.|+ ..+.++ .|.++|+ |.+
T Consensus 80 ~CP~C~-G~l~y~--~~~Y~C~--G~i 101 (160)
T 2riq_A 80 PCEECS-GQLVFK--SDAYYCT--GDV 101 (160)
T ss_dssp CCTTTC-CCEEEE--TTEEEEC--CEE
T ss_pred CCCCCC-CEEEEe--CCeEEEC--CCC
Confidence 699999 467775 3899998 555
No 494
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=22.63 E-value=57 Score=30.68 Aligned_cols=30 Identities=7% Similarity=0.236 Sum_probs=27.0
Q ss_pred CCCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 232 g~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
+-.+++.+||+.++|+.+|+++.++.+.+-
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~ 47 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLLAE 47 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 456899999999999999999999999754
No 495
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=22.60 E-value=57 Score=25.02 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=20.1
Q ss_pred CHhHHHHHhccCHHHHHHHHHH
Q 008455 236 SKSDIVKIVHICEATLMKRLIE 257 (565)
Q Consensus 236 t~~eIa~v~~Vse~TIrkR~kE 257 (565)
|+.++|+.+||+..||.+-.+-
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHC
Confidence 9999999999999999987664
No 496
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=22.59 E-value=65 Score=28.32 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHHH
Q 008455 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 219 IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~k 256 (565)
|..||+=+.+. +|+. .|+++||+.+|||..||-..+.
T Consensus 22 Il~aa~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 59 (208)
T 3cwr_A 22 IVGAAQRLLSS-GGAAAMTMEGVASEAGIAKKTLYRFAS 59 (208)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCHHhccHHHHHHHhCCCHHHHHHHcC
Confidence 55555555443 5775 9999999999999999977664
No 497
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=22.50 E-value=82 Score=28.19 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhHHHHHhccCHHHHHHHHH
Q 008455 218 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 218 ~IaaAALylAar~~g~~-~t~~eIa~v~~Vse~TIrkR~k 256 (565)
-|..||+=+.+. .|+. .|+++||+.+||+..||-..+.
T Consensus 19 ~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~ 57 (221)
T 3c2b_A 19 AVLDQALRLLVE-GGEKALTTSGLARAANCSKESLYKWFG 57 (221)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHh-CCcccCCHHHHHHHhCCCHHHHHHhCC
Confidence 355555555543 5775 8999999999999999987774
No 498
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=22.49 E-value=59 Score=28.21 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhHHHHHhccCHHHHHHHHH
Q 008455 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (565)
Q Consensus 217 ~~IaaAALylAar~~g~-~~t~~eIa~v~~Vse~TIrkR~k 256 (565)
.-|..||+=+.+. .|+ ..|+++||+.+|||..||-..+.
T Consensus 9 ~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 48 (191)
T 1sgm_A 9 EKILHTASRLSQL-QGYHATGLNQIVKESGAPKGSLYHFFP 48 (191)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHHHHCCCSCHHHHSTT
T ss_pred HHHHHHHHHHHHH-cCccccCHHHHHHHHCCCchhHHHHcc
Confidence 3455566555554 577 58999999999999999987765
No 499
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=22.46 E-value=57 Score=27.59 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=26.1
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHcc
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t 261 (565)
-.+|+.+||..++++.+|+.+.++.|.+-
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 80 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQE 80 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999988743
No 500
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=22.42 E-value=51 Score=25.91 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=29.4
Q ss_pred CCCCHhHHHHHhccCHHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 008455 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (565)
Q Consensus 233 ~~~t~~eIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~~f~~~~~ 276 (565)
...|+.++|..+||+..||.+-.+- ....+++.+..+..
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g-----~~~~~~~~l~~ia~ 67 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG-----INALNAYNAALLAK 67 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4689999999999999999876542 23467777766654
Done!