Query 008456
Match_columns 564
No_of_seqs 335 out of 2156
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 12:23:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0717 Molecular chaperone (D 100.0 3E-82 6.5E-87 663.7 28.1 447 2-511 4-454 (508)
2 COG5269 ZUO1 Ribosome-associat 100.0 5.7E-34 1.2E-38 283.3 15.6 191 5-232 42-235 (379)
3 COG0484 DnaJ DnaJ-class molecu 99.9 4.4E-24 9.6E-29 224.3 9.2 74 4-81 2-75 (371)
4 KOG0713 Molecular chaperone (D 99.9 8.5E-22 1.8E-26 202.9 8.2 75 4-82 14-88 (336)
5 PRK14296 chaperone protein Dna 99.8 4.4E-19 9.5E-24 188.7 8.7 71 5-80 3-73 (372)
6 KOG0712 Molecular chaperone (D 99.8 3.7E-19 8E-24 185.1 7.9 75 5-86 3-77 (337)
7 PRK14288 chaperone protein Dna 99.8 5.2E-19 1.1E-23 188.0 8.4 70 5-78 2-71 (369)
8 PRK14286 chaperone protein Dna 99.8 1.3E-18 2.9E-23 185.0 9.2 72 5-80 3-74 (372)
9 PRK14287 chaperone protein Dna 99.7 4.8E-18 1E-22 180.8 8.4 69 5-78 3-71 (371)
10 PRK14285 chaperone protein Dna 99.7 6.4E-18 1.4E-22 179.4 9.2 71 5-79 2-72 (365)
11 PRK14276 chaperone protein Dna 99.7 5.6E-18 1.2E-22 180.7 8.7 71 5-80 3-73 (380)
12 PRK14279 chaperone protein Dna 99.7 6.2E-18 1.4E-22 181.1 8.8 70 5-78 8-77 (392)
13 PRK14282 chaperone protein Dna 99.7 9.1E-18 2E-22 178.4 9.6 72 4-78 2-73 (369)
14 PRK14301 chaperone protein Dna 99.7 9.5E-18 2E-22 178.6 9.3 70 5-78 3-72 (373)
15 PRK14294 chaperone protein Dna 99.7 8.4E-18 1.8E-22 178.5 8.5 72 4-79 2-73 (366)
16 PRK14297 chaperone protein Dna 99.7 1.3E-17 2.9E-22 177.8 9.4 71 5-79 3-73 (380)
17 PRK14277 chaperone protein Dna 99.7 1.6E-17 3.6E-22 177.5 9.7 72 5-80 4-75 (386)
18 PRK10767 chaperone protein Dna 99.7 1.6E-17 3.5E-22 176.6 9.0 70 5-78 3-72 (371)
19 PRK14298 chaperone protein Dna 99.7 1.4E-17 3.1E-22 177.5 8.6 69 5-78 4-72 (377)
20 PRK14295 chaperone protein Dna 99.7 1.9E-17 4.2E-22 177.2 9.5 71 5-79 8-82 (389)
21 PRK14299 chaperone protein Dna 99.7 2.6E-17 5.6E-22 169.8 9.5 69 5-78 3-71 (291)
22 PTZ00037 DnaJ_C chaperone prot 99.7 1.5E-17 3.3E-22 179.5 7.3 67 5-79 27-93 (421)
23 PRK14280 chaperone protein Dna 99.7 2.4E-17 5.2E-22 175.7 8.6 70 5-79 3-72 (376)
24 PRK14278 chaperone protein Dna 99.7 3E-17 6.5E-22 175.1 8.9 68 6-78 3-70 (378)
25 PRK14291 chaperone protein Dna 99.7 3.1E-17 6.8E-22 175.1 8.8 69 5-78 2-70 (382)
26 PRK14283 chaperone protein Dna 99.7 3.3E-17 7.2E-22 174.7 6.7 71 4-79 3-73 (378)
27 PRK14281 chaperone protein Dna 99.7 8E-17 1.7E-21 172.8 8.4 72 5-80 2-73 (397)
28 TIGR02349 DnaJ_bact chaperone 99.7 1.5E-16 3.3E-21 168.1 8.7 68 7-79 1-68 (354)
29 PRK14284 chaperone protein Dna 99.7 2E-16 4.3E-21 169.5 9.0 71 6-80 1-71 (391)
30 KOG0718 Molecular chaperone (D 99.6 9.1E-17 2E-21 170.7 6.0 76 5-81 8-83 (546)
31 PRK14290 chaperone protein Dna 99.6 2.2E-16 4.8E-21 167.7 8.8 70 6-78 3-72 (365)
32 PTZ00341 Ring-infected erythro 99.6 7.9E-17 1.7E-21 183.5 4.7 72 4-80 571-642 (1136)
33 PRK14300 chaperone protein Dna 99.6 2.9E-16 6.2E-21 167.2 8.3 69 6-79 3-71 (372)
34 PRK10266 curved DNA-binding pr 99.6 3.4E-16 7.4E-21 162.5 8.4 68 5-77 3-70 (306)
35 PF00226 DnaJ: DnaJ domain; I 99.6 2.4E-16 5.1E-21 126.5 5.5 64 7-73 1-64 (64)
36 KOG0719 Molecular chaperone (D 99.6 2.2E-16 4.9E-21 155.6 5.4 72 4-77 12-83 (264)
37 KOG0691 Molecular chaperone (D 99.6 3.3E-16 7.2E-21 161.4 6.4 70 5-78 4-73 (296)
38 PRK14289 chaperone protein Dna 99.6 8.6E-16 1.9E-20 164.3 8.2 70 5-78 4-73 (386)
39 KOG0716 Molecular chaperone (D 99.6 5.3E-16 1.2E-20 156.1 5.6 71 6-80 31-101 (279)
40 KOG0624 dsRNA-activated protei 99.6 1.4E-15 3.1E-20 157.5 7.8 73 3-76 391-463 (504)
41 PRK14292 chaperone protein Dna 99.6 2.1E-15 4.6E-20 160.4 6.7 68 6-78 2-69 (371)
42 KOG0715 Molecular chaperone (D 99.6 2.7E-15 5.8E-20 154.8 6.2 70 3-77 40-109 (288)
43 PRK14293 chaperone protein Dna 99.6 2.7E-15 5.8E-20 159.9 6.3 68 6-78 3-70 (374)
44 smart00271 DnaJ DnaJ molecular 99.5 1.4E-14 3.1E-19 114.3 6.6 59 6-67 1-59 (60)
45 COG2214 CbpA DnaJ-class molecu 99.5 1.7E-14 3.7E-19 137.4 6.6 73 1-76 1-73 (237)
46 cd06257 DnaJ DnaJ domain or J- 99.5 4.2E-14 9.1E-19 109.6 6.4 55 7-65 1-55 (55)
47 TIGR03835 termin_org_DnaJ term 99.4 1.5E-13 3.2E-18 154.3 6.8 69 5-78 1-69 (871)
48 KOG0721 Molecular chaperone (D 99.4 3.5E-13 7.6E-18 132.1 6.3 70 4-77 97-166 (230)
49 PHA03102 Small T antigen; Revi 99.4 3.4E-13 7.4E-18 127.2 5.1 64 6-77 5-70 (153)
50 PRK01356 hscB co-chaperone Hsc 99.4 5.3E-13 1.1E-17 127.7 6.2 71 5-76 1-73 (166)
51 KOG0550 Molecular chaperone (D 99.4 3.6E-13 7.7E-18 142.4 4.6 69 4-75 371-439 (486)
52 KOG0714 Molecular chaperone (D 99.4 7.9E-13 1.7E-17 132.1 6.4 73 5-80 2-74 (306)
53 PRK05014 hscB co-chaperone Hsc 99.3 1.6E-12 3.4E-17 125.0 6.8 70 6-75 1-73 (171)
54 PRK03578 hscB co-chaperone Hsc 99.3 2.9E-12 6.2E-17 123.8 6.7 75 1-75 1-78 (176)
55 PRK00294 hscB co-chaperone Hsc 99.3 7.3E-12 1.6E-16 120.6 7.6 74 3-76 1-77 (173)
56 KOG0720 Molecular chaperone (D 99.2 6.6E-12 1.4E-16 134.1 5.1 66 5-75 234-299 (490)
57 PRK09430 djlA Dna-J like membr 99.1 5.7E-11 1.2E-15 121.7 5.9 60 6-65 200-262 (267)
58 KOG0722 Molecular chaperone (D 99.1 3.4E-11 7.3E-16 120.6 3.3 66 5-75 32-97 (329)
59 PTZ00100 DnaJ chaperone protei 99.1 7.6E-11 1.7E-15 106.5 4.3 53 4-64 63-115 (116)
60 PHA02624 large T antigen; Prov 99.0 4.2E-10 9.2E-15 125.4 4.6 60 5-72 10-71 (647)
61 COG5407 SEC63 Preprotein trans 98.9 1.8E-09 3.9E-14 115.3 6.7 74 4-77 96-170 (610)
62 PRK01773 hscB co-chaperone Hsc 98.8 4.7E-09 1E-13 101.3 6.6 71 5-75 1-74 (173)
63 TIGR00714 hscB Fe-S protein as 98.7 2.5E-08 5.3E-13 94.9 6.5 60 18-77 3-63 (157)
64 KOG1150 Predicted molecular ch 98.7 2.3E-08 5.1E-13 97.4 5.0 66 6-74 53-118 (250)
65 KOG0724 Zuotin and related mol 98.7 5.6E-08 1.2E-12 102.1 8.3 181 17-232 3-188 (335)
66 PF12171 zf-C2H2_jaz: Zinc-fin 98.5 5E-08 1.1E-12 66.2 1.8 26 299-324 2-27 (27)
67 smart00451 ZnF_U1 U1-like zinc 98.1 1.8E-06 3.9E-11 61.3 2.4 32 298-329 3-34 (35)
68 PF12874 zf-met: Zinc-finger o 98.0 4E-06 8.7E-11 55.4 2.1 25 299-323 1-25 (25)
69 KOG1789 Endocytosis protein RM 97.9 1.2E-05 2.7E-10 93.1 5.0 56 2-64 1277-1336(2235)
70 KOG0568 Molecular chaperone (D 97.7 3.1E-05 6.8E-10 77.3 4.1 53 7-64 48-101 (342)
71 KOG2785 C2H2-type Zn-finger pr 97.7 3.1E-05 6.6E-10 82.1 3.6 39 294-332 64-102 (390)
72 KOG3408 U1-like Zn-finger-cont 97.6 2.2E-05 4.7E-10 71.3 1.9 36 296-331 55-90 (129)
73 KOG0723 Molecular chaperone (D 97.1 0.00063 1.4E-08 60.8 4.4 51 8-66 58-108 (112)
74 COG5112 UFD2 U1-like Zn-finger 96.5 0.0015 3.2E-08 58.4 2.4 38 296-333 53-90 (126)
75 PF06220 zf-U1: U1 zinc finger 96.2 0.0038 8.3E-08 46.1 2.5 32 298-329 3-36 (38)
76 KOG0431 Auxilin-like protein a 95.9 0.0096 2.1E-07 65.8 4.9 51 13-63 395-448 (453)
77 KOG3192 Mitochondrial J-type c 95.7 0.012 2.5E-07 56.2 3.9 71 5-75 7-80 (168)
78 COG1076 DjlA DnaJ-domain-conta 95.5 0.01 2.2E-07 57.4 3.1 58 6-63 113-173 (174)
79 PF00096 zf-C2H2: Zinc finger, 95.5 0.0091 2E-07 38.4 1.9 22 299-320 1-22 (23)
80 PLN02748 tRNA dimethylallyltra 95.2 0.015 3.3E-07 64.5 3.5 38 296-333 416-454 (468)
81 KOG0717 Molecular chaperone (D 94.7 0.096 2.1E-06 57.6 7.8 77 146-231 127-203 (508)
82 PF13894 zf-C2H2_4: C2H2-type 94.1 0.034 7.3E-07 35.2 1.8 22 299-320 1-22 (24)
83 PF13912 zf-C2H2_6: C2H2-type 93.7 0.038 8.3E-07 36.8 1.5 23 298-320 1-23 (27)
84 COG1076 DjlA DnaJ-domain-conta 93.3 0.052 1.1E-06 52.5 2.4 69 7-75 2-73 (174)
85 KOG4727 U1-like Zn-finger prot 93.0 0.059 1.3E-06 52.1 2.1 35 296-330 73-107 (193)
86 PF12756 zf-C2H2_2: C2H2 type 92.2 0.049 1.1E-06 46.1 0.5 31 298-328 50-80 (100)
87 smart00355 ZnF_C2H2 zinc finge 91.4 0.16 3.4E-06 32.3 2.1 21 299-319 1-21 (26)
88 COG5188 PRP9 Splicing factor 3 91.1 0.12 2.5E-06 55.1 2.0 38 295-332 235-272 (470)
89 KOG3032 Uncharacterized conser 90.3 0.24 5.3E-06 50.1 3.2 36 296-332 33-68 (264)
90 KOG2837 Protein containing a U 88.2 0.13 2.8E-06 53.1 -0.4 34 298-331 25-58 (309)
91 PHA02768 hypothetical protein; 87.8 0.31 6.6E-06 39.0 1.6 25 298-324 5-29 (55)
92 PF07535 zf-DBF: DBF zinc fing 86.4 0.41 9E-06 37.4 1.6 27 298-327 5-31 (49)
93 smart00586 ZnF_DBF Zinc finger 85.7 0.46 1E-05 37.2 1.6 29 296-327 3-31 (49)
94 PF04959 ARS2: Arsenite-resist 85.4 0.83 1.8E-05 46.0 3.6 39 296-335 75-113 (214)
95 PF03656 Pam16: Pam16; InterP 84.3 1.4 3.1E-05 41.0 4.3 49 8-64 60-108 (127)
96 PHA00616 hypothetical protein 80.7 0.86 1.9E-05 34.9 1.2 22 299-320 2-23 (44)
97 PF13913 zf-C2HC_2: zinc-finge 76.8 2.1 4.5E-05 28.7 2.0 21 299-320 3-23 (25)
98 KOG1029 Endocytic adaptor prot 70.3 26 0.00056 41.5 9.8 20 192-211 332-352 (1118)
99 PF13446 RPT: A repeated domai 62.9 16 0.00034 29.2 4.7 26 7-32 6-31 (62)
100 KOG3454 U1 snRNP-specific prot 60.3 11 0.00024 36.5 3.9 42 298-339 3-46 (165)
101 KOG2482 Predicted C2H2-type Zn 57.8 3.6 7.8E-05 44.1 0.2 33 293-325 190-222 (423)
102 PHA00732 hypothetical protein 54.1 8.5 0.00018 32.9 1.9 22 299-320 2-23 (79)
103 PF13465 zf-H2C2_2: Zinc-finge 53.5 6 0.00013 26.5 0.7 15 296-310 12-26 (26)
104 KOG4848 Extracellular matrix-a 51.4 49 0.0011 33.1 6.8 26 222-247 184-209 (225)
105 KOG0227 Splicing factor 3a, su 50.9 11 0.00024 37.5 2.3 38 297-334 52-89 (222)
106 PF14687 DUF4460: Domain of un 50.1 26 0.00055 32.0 4.4 51 16-66 4-54 (112)
107 KOG1994 Predicted RNA binding 46.4 10 0.00022 38.7 1.3 23 296-318 237-259 (268)
108 smart00734 ZnF_Rad18 Rad18-lik 46.2 15 0.00033 24.9 1.7 20 299-319 2-21 (26)
109 PF10147 CR6_interact: Growth 46.1 1.8E+02 0.0038 29.8 10.0 25 224-248 175-199 (217)
110 PF12269 zf-CpG_bind_C: CpG bi 44.3 32 0.0007 35.4 4.5 18 297-314 83-100 (236)
111 PF05605 zf-Di19: Drought indu 43.5 20 0.00044 27.9 2.3 22 298-320 2-23 (54)
112 COG5246 PRP11 Splicing factor 42.1 15 0.00032 36.4 1.7 34 297-330 52-85 (222)
113 PF14968 CCDC84: Coiled coil p 42.1 17 0.00037 39.1 2.3 36 300-338 1-36 (336)
114 COG4049 Uncharacterized protei 41.6 12 0.00025 30.4 0.7 28 296-324 15-42 (65)
115 KOG3623 Homeobox transcription 40.5 8.3 0.00018 45.1 -0.3 33 296-328 307-339 (1007)
116 KOG2384 Major histocompatibili 38.4 8.3 0.00018 38.6 -0.7 35 295-330 81-115 (223)
117 KOG0150 Spliceosomal protein F 37.7 31 0.00068 36.7 3.3 39 297-335 9-48 (336)
118 PF11833 DUF3353: Protein of u 37.4 44 0.00095 33.3 4.2 38 15-64 1-38 (194)
119 PTZ00448 hypothetical protein; 36.9 26 0.00057 38.1 2.7 37 298-334 314-350 (373)
120 PF04988 AKAP95: A-kinase anch 35.8 39 0.00084 32.9 3.3 38 299-336 1-38 (165)
121 PF04423 Rad50_zn_hook: Rad50 34.7 36 0.00077 26.6 2.5 32 300-334 22-53 (54)
122 PF08790 zf-LYAR: LYAR-type C2 34.4 7.3 0.00016 27.2 -1.3 19 299-318 1-19 (28)
123 PF12756 zf-C2H2_2: C2H2 type 34.1 13 0.00029 31.1 0.0 28 300-328 1-28 (100)
124 COG5067 DBF4 Protein kinase es 33.2 14 0.00031 40.4 0.0 28 296-326 420-447 (468)
125 KOG2462 C2H2-type Zn-finger pr 33.2 22 0.00047 37.3 1.3 27 296-322 159-185 (279)
126 PHA00733 hypothetical protein 31.3 34 0.00073 31.7 2.1 25 298-323 99-123 (128)
127 PF02892 zf-BED: BED zinc fing 28.3 31 0.00068 25.5 1.1 24 296-319 14-41 (45)
128 KOG0388 SNF2 family DNA-depend 28.0 94 0.002 37.1 5.3 64 161-231 359-425 (1185)
129 PHA00733 hypothetical protein 27.1 41 0.00089 31.1 1.9 24 297-320 72-95 (128)
130 PRK00247 putative inner membra 27.1 1.4E+02 0.0031 33.4 6.3 16 166-181 260-275 (429)
131 KOG1074 Transcriptional repres 26.7 31 0.00066 41.2 1.2 23 298-320 879-901 (958)
132 PF13821 DUF4187: Domain of un 23.6 43 0.00093 26.8 1.2 23 296-318 25-47 (55)
133 KOG2785 C2H2-type Zn-finger pr 23.4 62 0.0014 35.4 2.7 37 298-334 3-39 (390)
134 cd00084 HMG-box High Mobility 22.1 1.6E+02 0.0035 22.6 4.2 43 24-75 12-54 (66)
135 PTZ00266 NIMA-related protein 21.8 5.3E+02 0.011 32.2 10.3 10 192-201 436-445 (1021)
136 PF04780 DUF629: Protein of un 21.5 59 0.0013 36.7 2.1 29 298-327 57-85 (466)
137 PHA00732 hypothetical protein 21.2 32 0.00069 29.4 -0.0 21 299-322 28-48 (79)
138 KOG1074 Transcriptional repres 20.8 39 0.00085 40.4 0.6 24 298-321 353-376 (958)
No 1
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-82 Score=663.68 Aligned_cols=447 Identities=39% Similarity=0.595 Sum_probs=347.8
Q ss_pred CCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhc
Q 008456 2 ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (564)
Q Consensus 2 a~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~ 81 (564)
+..++|||+||||.++|+..+||++||+|||+|||||| |. ..++|+++|+.|+.||+|||||++|+|||+|+.+||+
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDkn--pd-~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKN--PD-RIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCC--Cc-cHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 34578999999999999999999999999999999998 43 7899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCccchhhhHHHHhHhhHHHHHHhhcCCCcccccCCCCCCCCCChhhhH
Q 008456 82 SDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT 161 (564)
Q Consensus 82 ~~~~~~~~~~~~~d~~~~F~~s~f~gf~~~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~s~~~~~P~fG~~~s~~e~V~ 161 (564)
+..... +..++++|.||+++||.||.++..|||.||++||..++..++.|+. +.+..+|.||++.|+|+.|.
T Consensus 81 ~~~s~~--~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~------d~~~~ap~fg~~~t~ye~~~ 152 (508)
T KOG0717|consen 81 GKNSDT--GVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLG------DSKLLYPLFGYSTTDYEQVV 152 (508)
T ss_pred CCCCcc--ccchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhcc------CCccccccccCCCCcHHHHH
Confidence 876533 4678999999999999999999999999999999999999988764 45668999999999999999
Q ss_pred HHHHHHhccccccccccccccccCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHhHHHHhHHHHH
Q 008456 162 AFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIE 241 (564)
Q Consensus 162 ~FY~~W~~F~T~r~Fsw~deyd~~~a~nR~~RR~mEkeNkK~R~k~kkE~n~~VR~LV~fvkkrDpRv~~~~~~~~~e~e 241 (564)
.||.||++|+|.++|+|+|+|+++++.+|..||+|+++|+++|+.+|++||++||.||.||+||||||++++.++.++.+
T Consensus 153 ~fY~~W~afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKrDpRvk~~l~~k~~E~~ 232 (508)
T KOG0717|consen 153 PFYQFWLAFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVKKRDPRVKAMLELKDAEAY 232 (508)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997776667766
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHhhhcchhhhhhccccCcccCCccc-chhHHHhhccCccccccccccccCHHHHHHh
Q 008456 242 RKREEEKERKKRLEKERME---RAKRYEEPAWARIDDEGDNEVGNEEG-LEEEEIEKKRSEFYCVLCGKKFKSEKQWTNH 317 (564)
Q Consensus 242 ~kk~ee~~rk~~~~~~r~e---~a~~~~e~~w~~~~e~e~~~~~~~~~-~eee~~ee~~~~~~C~~C~K~F~s~~~~~nH 317 (564)
+.+.++. |+.+...+++. +...+...+|+...+.++.+....++ .+.++.+.+.+.+||+||+|+|+|++||.||
T Consensus 233 r~kqe~~-Rk~~~~~r~e~~e~r~n~~e~~~~~~~~e~ed~~e~~~d~~~e~de~d~~ge~lyC~vCnKsFKseKq~kNH 311 (508)
T KOG0717|consen 233 RSKQEES-RKQQLRKRREYAETRKNNGEGSEEALKEEIEDELEKSSDDETESDEADNEGEVLYCVVCNKSFKSEKQLKNH 311 (508)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhhccccchhhhhhhhcCCceEEeeccccccchHHHHhh
Confidence 6444333 33333333332 12222333454433333322211111 1112223445559999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHhhhhhHHhhhcCCCCchhHHHhHhhhcccCcchhhhcCCCCCCCCCCCcccchhhccccccccc
Q 008456 318 EQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNE 397 (564)
Q Consensus 318 ~~SkkHk~~~~~l~~~~~~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (564)
++||||+++|.+|+++|.+|++ -...|..+ ..+.++|. +
T Consensus 312 EnSKKHkenv~eLrqemEEEe~-d~~~~qae--------------------------------e~e~e~~s-------e- 350 (508)
T KOG0717|consen 312 ENSKKHKENVAELRQEMEEEEE-DEAQGQAE--------------------------------ENELEDFS-------E- 350 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhhhccc--------------------------------cchhhhhh-------h-
Confidence 9999999999999999987652 00001110 01223332 1
Q ss_pred cccccCCCCCcccchhhhhHHHHHHHHccccccccccccccccccccccccccccCCccccccccchhhhhhhhhhhccC
Q 008456 398 VDDRFGKEDEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKNKKDRGKK 477 (564)
Q Consensus 398 ~~~~~~~~~~~~~ed~dde~~~l~~m~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~n~k~~~~~~~~~~~~~ 477 (564)
++-+++..+.+....++...+-|+|+..|.+-...+-...+-+ -+++.+.+..++.++++.|.++..+. .|.-
T Consensus 351 ---ee~~~d~ses~~~n~~~~~~k~~~s~d~n~~~n~~~E~~d~~~--e~~e~d~dtae~ee~d~qk~~~~~k~-~K~~- 423 (508)
T KOG0717|consen 351 ---EEPEDDPSESEYKNKEKDRDKKNVSFDENEKVNTFAEISDEDF--EPAEEDGDTAESEEFDQQKNKSVNKK-IKPC- 423 (508)
T ss_pred ---hccccCCCCCchhhhHhhhhhcccchhhhhhhccccccccCCC--cccccccccccchhhccccccchhhh-cccc-
Confidence 1223455666778889999999999999988766665555533 33467777788889999999665543 2221
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCCCCccccccC
Q 008456 478 SGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSS 511 (564)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~s~ 511 (564)
.++...+.++..|....+.+++..+..+.|.
T Consensus 424 ---~D~k~~a~kvk~pk~~~~kd~~k~a~~~p~~ 454 (508)
T KOG0717|consen 424 ---DDKKDEAKKVKKPKGKVTKDNKKPATVAPSS 454 (508)
T ss_pred ---ccchhhhhhccCCCCCCCCccCCCccCCCCC
Confidence 1667778888888888888888887766555
No 2
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-34 Score=283.34 Aligned_cols=191 Identities=30% Similarity=0.447 Sum_probs=164.3
Q ss_pred CcCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhc
Q 008456 5 KRCLYEVLGLRK---ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (564)
Q Consensus 5 k~d~YevLGv~~---~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~ 81 (564)
..|+|.+|||+. .|++.+|.+|+++.+++||||+....| ...+...|.+||.||+||+|+..|..||+.....
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g--~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~a-- 117 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG--NKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDA-- 117 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC--CCCcHHHHHHHHHHHHHhccHHHHhhcccccccc--
Confidence 468999999997 799999999999999999999995544 2357889999999999999999999999963211
Q ss_pred cCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCccchhhhHHHHhHhhHHHHHHhhcCCCcccccCCCCCCCCCChhhhH
Q 008456 82 SDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT 161 (564)
Q Consensus 82 ~~~~~~~~~~~~~d~~~~F~~s~f~gf~~~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~s~~~~~P~fG~~~s~~e~V~ 161 (564)
.+| ..-......||.+|+++|.+- +.| +..+++|+||+++++...|.
T Consensus 118 ----------dvp-----------pp~~~t~~~Ffe~w~pvFe~e----arF--------SkKqPvPsLg~~dss~keVe 164 (379)
T COG5269 118 ----------DVP-----------PPRIYTPDEFFEVWEPVFERE----ARF--------SKKQPVPSLGPSDSSLKEVE 164 (379)
T ss_pred ----------CCC-----------CccCCCchhHHHHHHHHHHhh----hhc--------cccCCCCCCCCchhHHHHHH
Confidence 111 111234567999999999764 333 35678999999999999999
Q ss_pred HHHHHHhccccccccccccccccCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHhH
Q 008456 162 AFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDM 232 (564)
Q Consensus 162 ~FY~~W~~F~T~r~Fsw~deyd~~~a~nR~~RR~mEkeNkK~R~k~kkE~n~~VR~LV~fvkkrDpRv~~~ 232 (564)
.||.||++|.|||+|.++|+--..+.++|..+|..|+.|+..|++.+...|.+|+.||+.+.+|||||+-+
T Consensus 165 ~FY~FW~nFdSWRtFE~lded~pdd~e~rD~kry~e~KNr~~r~k~K~~DnaRl~~LV~~A~~~DPRIK~f 235 (379)
T COG5269 165 EFYEFWSNFDSWRTFEPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSF 235 (379)
T ss_pred HHHHHHHhccccccccchhhhcCcchhhhhhHHHHHhhhHHHHHhhhchhHHHHHHHHHHHHhcCcchhhH
Confidence 99999999999999999999888889999999999999999999999999999999999999999999654
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.4e-24 Score=224.31 Aligned_cols=74 Identities=46% Similarity=0.745 Sum_probs=67.8
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhc
Q 008456 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (564)
Q Consensus 4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~ 81 (564)
.++|||+||||+++||.+|||+|||+||++||||+| ++ .++|.++|++|++||+|||||++|+.||.++...+.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n--~g--~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRN--PG--DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CC--CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 468999999999999999999999999999999999 43 568999999999999999999999999999875443
No 4
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=8.5e-22 Score=202.94 Aligned_cols=75 Identities=44% Similarity=0.709 Sum_probs=69.7
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhcc
Q 008456 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS 82 (564)
Q Consensus 4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~ 82 (564)
..+|||+||||+++||..+||+|||||||+|||||| | +.+.|.+.|+.|+.||+|||||.+|+.||.+|+..+..
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkN--p--ddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~ 88 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKN--P--DDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKD 88 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC--C--CCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcc
Confidence 468999999999999999999999999999999999 4 35689999999999999999999999999999877664
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.4e-19 Score=188.72 Aligned_cols=71 Identities=39% Similarity=0.574 Sum_probs=65.0
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (564)
.+|||+||||+++||.++||+|||+||++||||+| +. ..|.++|+.|++||+|||||.+|+.||.++...+
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n--~~---~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~ 73 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN--KS---PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC---chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence 57999999999999999999999999999999999 32 3588999999999999999999999999987543
No 6
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.7e-19 Score=185.13 Aligned_cols=75 Identities=41% Similarity=0.685 Sum_probs=68.1
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhccCC
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDL 84 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~~~ 84 (564)
.+.||.||||+++||..+||+|||+||++|||||| |+ |.++|++|+.||+|||||.+|..||.+++..+.++.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn--~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~ 75 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKN--PD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGG 75 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCC--cc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccC
Confidence 46799999999999999999999999999999999 53 789999999999999999999999999998875544
Q ss_pred CC
Q 008456 85 NS 86 (564)
Q Consensus 85 ~~ 86 (564)
.+
T Consensus 76 ~~ 77 (337)
T KOG0712|consen 76 GG 77 (337)
T ss_pred CC
Confidence 33
No 7
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.2e-19 Score=187.99 Aligned_cols=70 Identities=40% Similarity=0.679 Sum_probs=64.2
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
..|||+||||+++||.++||+|||+||++||||+| ++ ...|.++|+.|++||+|||||.+|+.||.++..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~--~~--~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRN--AG--DKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--ccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 47999999999999999999999999999999999 32 245899999999999999999999999998764
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.3e-18 Score=185.03 Aligned_cols=72 Identities=43% Similarity=0.770 Sum_probs=65.4
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (564)
.+|||+||||+++||.++||+|||+||++||||+| ++ ..+|.++|++|++||+|||||.+|+.||.++...+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKN--KG--NKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--chHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence 47999999999999999999999999999999999 32 34688999999999999999999999999886543
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=4.8e-18 Score=180.76 Aligned_cols=69 Identities=42% Similarity=0.738 Sum_probs=63.7
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
..|||+||||+++||.++||+|||+||++||||+|. . ..|.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~--~---~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK--A---PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 579999999999999999999999999999999993 1 35889999999999999999999999998764
No 10
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=6.4e-18 Score=179.41 Aligned_cols=71 Identities=48% Similarity=0.746 Sum_probs=64.9
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (564)
.+|||+||||+++||.++||+|||+||++||||+| ++ .+.|.++|+.|++||+||+||.+|+.||.++...
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~ 72 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKN--KG--NKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA 72 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--CHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence 47999999999999999999999999999999999 32 3468899999999999999999999999987643
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=5.6e-18 Score=180.73 Aligned_cols=71 Identities=38% Similarity=0.602 Sum_probs=64.7
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (564)
.+|||+||||+++||.++||+|||+||++||||+|. . ..|.++|+.|++||+||+||.+|+.||.++...+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~--~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~ 73 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK--E---PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA 73 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence 579999999999999999999999999999999993 2 3578999999999999999999999999886543
No 12
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=6.2e-18 Score=181.06 Aligned_cols=70 Identities=37% Similarity=0.657 Sum_probs=64.4
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
.+|||+||||+++||.++||+|||+||++||||+| ++ .+.|.++|+.|++||+|||||.+|+.||.++..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDAN--PG--DPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--ChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 47999999999999999999999999999999999 33 346899999999999999999999999998753
No 13
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=9.1e-18 Score=178.45 Aligned_cols=72 Identities=44% Similarity=0.762 Sum_probs=65.2
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
..+|||+||||+++||.++||+|||+||++||||+| ++ +...|.++|+.|++||+|||||.+|+.||.++..
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~--~~-~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRH--PE-NRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--cc-chhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 358999999999999999999999999999999999 33 2346899999999999999999999999998754
No 14
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=9.5e-18 Score=178.60 Aligned_cols=70 Identities=47% Similarity=0.774 Sum_probs=64.4
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
..|||+||||+++||.++||+|||+||++||||+| ++ ...|.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRN--PD--NPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcC--CC--ChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 48999999999999999999999999999999999 32 346889999999999999999999999998764
No 15
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=8.4e-18 Score=178.55 Aligned_cols=72 Identities=44% Similarity=0.763 Sum_probs=65.2
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (564)
Q Consensus 4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (564)
..+|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++...
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g 73 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRN--PG--DKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG 73 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--chHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence 358999999999999999999999999999999999 32 2458899999999999999999999999987643
No 16
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.3e-17 Score=177.80 Aligned_cols=71 Identities=46% Similarity=0.775 Sum_probs=65.0
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (564)
..|||+||||+++||.++||+|||+||++||||+| ++ ...|.++|+.|++||+||+||.+|+.||.++...
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~ 73 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKN--KG--NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD 73 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence 47999999999999999999999999999999999 32 3468899999999999999999999999987654
No 17
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.6e-17 Score=177.48 Aligned_cols=72 Identities=43% Similarity=0.761 Sum_probs=65.4
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (564)
..|||+||||+++||.++||+|||+||++||||+| ++ ...|.++|+.|++||+|||||.+|+.||.++...+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 75 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLN--PG--DKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF 75 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence 47999999999999999999999999999999999 42 34688999999999999999999999999876543
No 18
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.6e-17 Score=176.62 Aligned_cols=70 Identities=50% Similarity=0.832 Sum_probs=64.1
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
.+|||+||||+++||.++||+|||+||++||||+| ++ ...|.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRN--PG--DKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--cHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 57999999999999999999999999999999999 32 245889999999999999999999999998754
No 19
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.4e-17 Score=177.51 Aligned_cols=69 Identities=43% Similarity=0.749 Sum_probs=63.7
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
.+|||+||||+++||.++||+|||+||++||||+|. . ..|.++|+.|++||+||+||.+|+.||.++..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~--~---~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK--E---PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC--C---hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 579999999999999999999999999999999993 1 35789999999999999999999999998764
No 20
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.9e-17 Score=177.16 Aligned_cols=71 Identities=44% Similarity=0.686 Sum_probs=64.0
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhh----ccchh
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS----HRSQI 79 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs----~r~~~ 79 (564)
..|||+||||+++||..+||+|||+||++||||+| ++ ...|.++|+.|++||+||+||.+|+.||. ++...
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g 82 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDAN--KG--DAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGG 82 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccc
Confidence 36999999999999999999999999999999999 32 24689999999999999999999999998 66543
No 21
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.6e-17 Score=169.84 Aligned_cols=69 Identities=41% Similarity=0.659 Sum_probs=63.7
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
..|||+||||+++||.++||+|||+||++||||+|. ...|.++|+.|++||+|||||.+|+.||.++..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-----SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 479999999999999999999999999999999993 235889999999999999999999999998764
No 22
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.70 E-value=1.5e-17 Score=179.46 Aligned_cols=67 Identities=51% Similarity=0.830 Sum_probs=61.5
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (564)
.+|||+||||+++||.++||+|||+||++||||+| + ..++|+.|++||+|||||.+|+.||.++...
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~--~------~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~ 93 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG--G------DPEKFKEISRAYEVLSDPEKRKIYDEYGEEG 93 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--c------hHHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence 47999999999999999999999999999999998 3 1479999999999999999999999987643
No 23
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.4e-17 Score=175.70 Aligned_cols=70 Identities=46% Similarity=0.681 Sum_probs=64.1
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (564)
..|||+||||+++||.++||+|||+||++||||+|.. ..|.++|++|++||+|||||.+|+.||.++...
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 72 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-----EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG 72 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence 4799999999999999999999999999999999932 348899999999999999999999999987643
No 24
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3e-17 Score=175.05 Aligned_cols=68 Identities=41% Similarity=0.646 Sum_probs=63.2
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
+|||+||||+++||.++||+|||+||++||||+| + .+.|.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~--~---~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVN--P---DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCC--C---cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 7999999999999999999999999999999999 3 246889999999999999999999999998753
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.1e-17 Score=175.12 Aligned_cols=69 Identities=42% Similarity=0.739 Sum_probs=63.7
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
++|||+||||+++||.++||+|||+||++||||+| +. +.|.++|+.|++||+|||||.+|+.||.++..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFN--KN---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 47999999999999999999999999999999999 32 35789999999999999999999999998764
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.3e-17 Score=174.66 Aligned_cols=71 Identities=42% Similarity=0.645 Sum_probs=65.1
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (564)
Q Consensus 4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (564)
..+|||+||||+++||..+||+|||+||++||||+| +. ..|.++|+.|++||+|||||.+|++||.++...
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g 73 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS--EE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG 73 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence 468999999999999999999999999999999999 32 468999999999999999999999999987643
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=8e-17 Score=172.82 Aligned_cols=72 Identities=46% Similarity=0.707 Sum_probs=65.0
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (564)
..|||+||||+++||..+||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++...+
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~ 73 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKN--PD--NKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence 37999999999999999999999999999999999 32 24688999999999999999999999999876543
No 28
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.66 E-value=1.5e-16 Score=168.06 Aligned_cols=68 Identities=46% Similarity=0.740 Sum_probs=62.5
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (564)
Q Consensus 7 d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (564)
|||+||||+++||.++||+|||+||++||||++. ...|.++|+.|++||+||+||.+|+.||.++...
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 68 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-----DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG 68 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----CccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence 7999999999999999999999999999999993 2357899999999999999999999999987643
No 29
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=2e-16 Score=169.45 Aligned_cols=71 Identities=44% Similarity=0.682 Sum_probs=64.6
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (564)
Q Consensus 6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (564)
.|||+||||+++||.++||+|||+||++||||+| ++ ...|.++|+.|++||+||+||.+|+.||.++...+
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKN--PG--DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--chHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 3899999999999999999999999999999999 32 34688999999999999999999999999987543
No 30
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=9.1e-17 Score=170.70 Aligned_cols=76 Identities=42% Similarity=0.631 Sum_probs=70.4
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhc
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~ 81 (564)
..+||.+|+|+++||.++|++|||++++.|||||+..|. ..+.|++.|+.|+.||+|||||++|+.||.+|.++|.
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd-~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPD-QKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChh-HHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 358999999999999999999999999999999996543 5678999999999999999999999999999998887
No 31
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=2.2e-16 Score=167.68 Aligned_cols=70 Identities=39% Similarity=0.743 Sum_probs=64.3
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
.|||+||||+++||..+||+|||+||++||||++ ++ ....|.++|+.|++||+|||||.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~--~~-~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLH--PG-NKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC-chhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 6999999999999999999999999999999998 32 3346899999999999999999999999998764
No 32
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.64 E-value=7.9e-17 Score=183.51 Aligned_cols=72 Identities=28% Similarity=0.471 Sum_probs=65.5
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (564)
Q Consensus 4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (564)
+.++||+||||+++||..+||+|||+||++||||++ ++ + .|..+|+.|++||+|||||.+|++||.+|..++
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN--~~-~--~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl 642 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKR--SG-N--EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI 642 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CC-c--hHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence 468999999999999999999999999999999999 43 2 478899999999999999999999999987543
No 33
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.9e-16 Score=167.23 Aligned_cols=69 Identities=36% Similarity=0.613 Sum_probs=63.1
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchh
Q 008456 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (564)
Q Consensus 6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (564)
+|||+||||+++||.++||+|||+||++||||++. . ..|.++|+.|++||+||+||.+|+.||.++...
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~--~---~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 71 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD--A---KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA 71 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---cCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence 69999999999999999999999999999999983 2 247889999999999999999999999987643
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.64 E-value=3.4e-16 Score=162.54 Aligned_cols=68 Identities=35% Similarity=0.595 Sum_probs=62.5
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~ 77 (564)
..|||+||||+++||.++||+|||+||++||||++.. ..|.++|+.|++||+||+||.+|+.||.++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-----~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-----PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 4799999999999999999999999999999999831 3589999999999999999999999999753
No 35
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.63 E-value=2.4e-16 Score=126.51 Aligned_cols=64 Identities=47% Similarity=0.818 Sum_probs=59.1
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhh
Q 008456 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYD 73 (564)
Q Consensus 7 d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YD 73 (564)
|||+||||+++|+.++|+++|+++++.+|||++. + ....+...|..|+.||++|+||..|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~--~-~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNS--G-DEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGT--S-THHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccch--h-hhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999999999999999999999999983 3 22578999999999999999999999998
No 36
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.2e-16 Score=155.63 Aligned_cols=72 Identities=51% Similarity=0.775 Sum_probs=65.9
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (564)
Q Consensus 4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~ 77 (564)
..+|+|+||||.++||..+|++||++|||+||||++ +-....+|+..|+.|+.||.||||..+|+.||..|.
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~--~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKN--HEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcc--hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 356999999999999999999999999999999999 334566899999999999999999999999999754
No 37
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.3e-16 Score=161.36 Aligned_cols=70 Identities=49% Similarity=0.732 Sum_probs=65.0
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
..|||.||||+.+||..+|++|||++||+|||||| |++ +.|.+.|+.|.+||+||+||..|+.||..+..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKN--p~d--P~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKN--PGD--PQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCC--CCC--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999 653 34999999999999999999999999998753
No 38
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=8.6e-16 Score=164.27 Aligned_cols=70 Identities=51% Similarity=0.808 Sum_probs=64.5
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
.+|||+||||+++||.++||+|||+||++||||+| ++ .+.|.++|+.|++||+||+||.+|+.||.++..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~--~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKN--PG--DKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 58999999999999999999999999999999999 33 346899999999999999999999999998764
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.3e-16 Score=156.06 Aligned_cols=71 Identities=51% Similarity=0.744 Sum_probs=64.5
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (564)
Q Consensus 6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (564)
.++|+||||+++|+.++||||||+|+++||||++ +. + ++++.+|+.|+.||.|||||.+|..||..+.-.+
T Consensus 31 ~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~--gd-~-P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l 101 (279)
T KOG0716|consen 31 LDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKN--GD-N-PEATDKFKEINTAYAILSDPTKRNVYDEYGELGL 101 (279)
T ss_pred hHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcC--CC-C-chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence 4699999999999999999999999999999999 32 2 6799999999999999999999999999876443
No 40
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.59 E-value=1.4e-15 Score=157.48 Aligned_cols=73 Identities=37% Similarity=0.641 Sum_probs=65.0
Q ss_pred CCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhcc
Q 008456 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (564)
Q Consensus 3 ~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r 76 (564)
+.++|||.||||.++|+..+|-+|||+||++||||-.+. ......|..+|..|..|-+|||||.+|+.||..-
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqd-EeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQD-EEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccC-HHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 468999999999999999999999999999999999842 1134469999999999999999999999999853
No 41
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.1e-15 Score=160.41 Aligned_cols=68 Identities=43% Similarity=0.715 Sum_probs=62.8
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
.|||+||||+++||.++||+|||+||++||||++. ...|.++|+.|++||+||+||.+|+.||.++..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-----~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-----EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 48999999999999999999999999999999992 245889999999999999999999999998763
No 42
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.7e-15 Score=154.85 Aligned_cols=70 Identities=41% Similarity=0.622 Sum_probs=64.2
Q ss_pred CCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (564)
Q Consensus 3 ~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~ 77 (564)
+.+.|||+||||+++||..|||+||++||++||||.|.. ..|.++|+.|.+||+||+|+.+|..||..+.
T Consensus 40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-----~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~ 109 (288)
T KOG0715|consen 40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-----KEASKKFKEISEAYEILSDEEKRQEYDVYGL 109 (288)
T ss_pred CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-----cchhhHHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 345599999999999999999999999999999999942 2799999999999999999999999999865
No 43
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=2.7e-15 Score=159.89 Aligned_cols=68 Identities=41% Similarity=0.715 Sum_probs=62.7
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
.|||+||||+++||..+||+|||+||++||||+|.. ..|.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-----~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-----PGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----cCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 699999999999999999999999999999999932 34789999999999999999999999998754
No 44
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.53 E-value=1.4e-14 Score=114.27 Aligned_cols=59 Identities=51% Similarity=0.837 Sum_probs=53.7
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChh
Q 008456 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67 (564)
Q Consensus 6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~ 67 (564)
++||+||||+++++..+||+||++|++.||||++. +. ...+...|..|+.||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~--~~-~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNP--GD-KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--Cc-hHHHHHHHHHHHHHHHHHcCCC
Confidence 47999999999999999999999999999999993 21 5678999999999999999985
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.7e-14 Score=137.36 Aligned_cols=73 Identities=44% Similarity=0.705 Sum_probs=65.1
Q ss_pred CCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhcc
Q 008456 1 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (564)
Q Consensus 1 ma~~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r 76 (564)
|+....+||+||||+++|+..+|++|||++|++||||++ ++... .|.+.|+.|++||+||+|+..|+.||..+
T Consensus 1 ~~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~--~~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 1 MMSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRN--PGDPK-VAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred CchhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC--CCchh-HHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 455678999999999999999999999999999999999 33222 58999999999999999999999999864
No 46
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.49 E-value=4.2e-14 Score=109.57 Aligned_cols=55 Identities=47% Similarity=0.770 Sum_probs=50.7
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCC
Q 008456 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65 (564)
Q Consensus 7 d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsD 65 (564)
|||+||||++++|.++|+++||+|+++||||++. +. ..+...|..|+.||+||+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~--~~--~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNP--DD--PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--Cc--HHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999993 21 5689999999999999986
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.42 E-value=1.5e-13 Score=154.30 Aligned_cols=69 Identities=42% Similarity=0.684 Sum_probs=63.2
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccch
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (564)
++|||+||||+++|+..+||+|||+||++||||++. + ..+..+|+.|+.||+||+||.+|+.||.++..
T Consensus 1 k~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~--~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a 69 (871)
T TIGR03835 1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNK--A---PDAASIFAEINEANDVLSNPKKRANYDKYGHD 69 (871)
T ss_pred CCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence 369999999999999999999999999999999983 2 45788999999999999999999999998753
No 48
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.5e-13 Score=132.13 Aligned_cols=70 Identities=31% Similarity=0.557 Sum_probs=63.2
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (564)
Q Consensus 4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~ 77 (564)
..-|+|+||||+++||..+||+|||+|+++|||||++.+ ....+.|..|.+||+.|+|+..|..|-.++.
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~----~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE----EGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc----chhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 457999999999999999999999999999999999432 4567889999999999999999999998865
No 49
>PHA03102 Small T antigen; Reviewed
Probab=99.38 E-value=3.4e-13 Score=127.25 Aligned_cols=64 Identities=23% Similarity=0.350 Sum_probs=58.9
Q ss_pred cCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456 6 RCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (564)
Q Consensus 6 ~d~YevLGv~~~A--s~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~ 77 (564)
..+|+||||+++| |..+||+|||++|+++|||++ + ..++|+.|+.||+||+|+..|..||.++.
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg--g------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~ 70 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG--G------DEEKMKELNTLYKKFRESVKSLRDLDGEE 70 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC--c------hhHHHHHHHHHHHHHhhHHHhccccccCC
Confidence 4589999999999 999999999999999999997 2 24699999999999999999999999865
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=5.3e-13 Score=127.74 Aligned_cols=71 Identities=25% Similarity=0.334 Sum_probs=60.0
Q ss_pred CcCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhcc
Q 008456 5 KRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (564)
Q Consensus 5 k~d~YevLGv~~~--As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r 76 (564)
+.|||+||||++. ++..+|+++||+|+++||||++... .....+...|..|++||.||+||.+|+.|+-..
T Consensus 1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~-~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTL-QEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 3689999999996 7899999999999999999998421 122345677999999999999999999998754
No 51
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.6e-13 Score=142.43 Aligned_cols=69 Identities=48% Similarity=0.826 Sum_probs=64.7
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (564)
Q Consensus 4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (564)
...|||.||||.++|+..+||+|||++||.||||++ .+ +..++..+|+.|-+||.||+||.+|..||+.
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~--ag-sq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN--AG-SQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC--cc-hhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 457999999999999999999999999999999999 45 4788999999999999999999999999985
No 52
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.9e-13 Score=132.09 Aligned_cols=73 Identities=42% Similarity=0.722 Sum_probs=64.6
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhh
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (564)
+.|||.||||.+.|+..+|++||++||++||||+| ++. ...|..+|.+|.+||+||+||.+|..||..+...+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~--~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~ 74 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKN--PSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGL 74 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCC--CCc-hhhHHHHHhhhhccccccCCHHHhhhccccCcccc
Confidence 57999999999999999999999999999999998 443 44566699999999999999999999999987433
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.33 E-value=1.6e-12 Score=124.97 Aligned_cols=70 Identities=29% Similarity=0.382 Sum_probs=59.4
Q ss_pred cCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456 6 RCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (564)
Q Consensus 6 ~d~YevLGv~~~--As~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (564)
.|||+||||++. ++..+|+++||+|+++||||+....+. ....|...|..|++||+||+||.+|+.|+-.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 389999999995 788999999999999999999843221 1224778999999999999999999999964
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.30 E-value=2.9e-12 Score=123.79 Aligned_cols=75 Identities=29% Similarity=0.429 Sum_probs=61.8
Q ss_pred CCCCCcCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456 1 MASEKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (564)
Q Consensus 1 ma~~k~d~YevLGv~~~--As~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (564)
|-+...|||+||||++. ++..+|+++||+|+++||||++...+. ....+...+..|+.||.||+||.+|+.|+-.
T Consensus 1 ~~~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 1 MVSLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 34567899999999995 689999999999999999999842211 1123566789999999999999999999974
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.27 E-value=7.3e-12 Score=120.65 Aligned_cols=74 Identities=26% Similarity=0.421 Sum_probs=62.0
Q ss_pred CCCcCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhcc
Q 008456 3 SEKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (564)
Q Consensus 3 ~~k~d~YevLGv~~~--As~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r 76 (564)
|...+||++|||++. .+..+|+++||+|+++||||++...+. ....+...|..|+.||.||+||..|+.|+-..
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l 77 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL 77 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 346899999999996 678999999999999999999843211 12347788999999999999999999999753
No 56
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=6.6e-12 Score=134.11 Aligned_cols=66 Identities=33% Similarity=0.577 Sum_probs=62.2
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (564)
..|+|.||||+.++++++||+.||++|...|||||. .+.|.+.|+.|+.||+||+|+.+|..||..
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-----~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-----IPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-----ChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 579999999999999999999999999999999994 456999999999999999999999999985
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.12 E-value=5.7e-11 Score=121.70 Aligned_cols=60 Identities=40% Similarity=0.632 Sum_probs=52.8
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCc---hHHHHHHHHHHHHHhhhcCC
Q 008456 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLS---QAEATAQFQELVHAYEVLSD 65 (564)
Q Consensus 6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~---~eea~~~F~~I~~AYeVLsD 65 (564)
.++|+||||+++||.++||+|||+|+++||||++...|.+ .+.|+++|+.|+.||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998543322 35689999999999999974
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.4e-11 Score=120.56 Aligned_cols=66 Identities=36% Similarity=0.635 Sum_probs=60.2
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (564)
Q Consensus 5 k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (564)
..|.|+||||.+.|+..+|.+|||+||++||||++.. +++...|..|..||++|.|...|..||-.
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-----~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-----PESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-----chhhhhhhhhhcccccccchhhHHhHHHH
Confidence 4678999999999999999999999999999999942 24569999999999999999999999975
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.08 E-value=7.6e-11 Score=106.50 Aligned_cols=53 Identities=30% Similarity=0.454 Sum_probs=47.3
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcC
Q 008456 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (564)
Q Consensus 4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLs 64 (564)
...++|+||||+++||.++|+++||+|+++||||+. | ....|+.|++||+||.
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---G-----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---G-----STYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-----CHHHHHHHHHHHHHHh
Confidence 346899999999999999999999999999999986 2 2468999999999995
No 60
>PHA02624 large T antigen; Provisional
Probab=98.96 E-value=4.2e-10 Score=125.45 Aligned_cols=60 Identities=27% Similarity=0.393 Sum_probs=55.6
Q ss_pred CcCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhh
Q 008456 5 KRCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY 72 (564)
Q Consensus 5 k~d~YevLGv~~~A--s~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~Y 72 (564)
..++|+||||+++| +..+||+|||++|++||||++ | +.++|+.|+.||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---G-----deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---G-----DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---C-----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 35799999999999 999999999999999999997 2 357999999999999999999999
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.90 E-value=1.8e-09 Score=115.26 Aligned_cols=74 Identities=26% Similarity=0.467 Sum_probs=64.4
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCC-CCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQS-GLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (564)
Q Consensus 4 ~k~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~-g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~ 77 (564)
..-|+|+||||+.+++..+||++||+|+.++||||-..- +....+-.+.+..|++||..|+|...|..|-.+|.
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 456899999999999999999999999999999998320 12445678999999999999999999999988764
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.84 E-value=4.7e-09 Score=101.33 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=59.9
Q ss_pred CcCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456 5 KRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (564)
Q Consensus 5 k~d~YevLGv~~~--As~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (564)
+.|||++|||++. .+...|++.|+.|...+|||+....+. ....+...-..|++||.+|+||-+|+.|=-.
T Consensus 1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~ 74 (173)
T PRK01773 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA 74 (173)
T ss_pred CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence 3689999999995 899999999999999999999843321 1224677889999999999999999999764
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.70 E-value=2.5e-08 Score=94.90 Aligned_cols=60 Identities=33% Similarity=0.397 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhccc
Q 008456 18 CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (564)
Q Consensus 18 As~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~ 77 (564)
.+..+|+++||+|+++||||+....+. ....+...|..|++||.||+||.+|+.|+-...
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 577899999999999999999743221 223478899999999999999999999998643
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.3e-08 Score=97.39 Aligned_cols=66 Identities=30% Similarity=0.465 Sum_probs=59.7
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 008456 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS 74 (564)
Q Consensus 6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs 74 (564)
-++|+||.|.|..+.++||+.||+|++..||||| |. +.+.|...|-.|..||.+|-|+..|..-+.
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN--~D-d~~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKN--PD-DAERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCC--cc-cHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4799999999999999999999999999999999 43 677899999999999999999987766554
No 65
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5.6e-08 Score=102.12 Aligned_cols=181 Identities=21% Similarity=0.264 Sum_probs=134.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhccchhhccCCCCCCCCCCCCCc
Q 008456 17 ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNL 96 (564)
Q Consensus 17 ~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~~~~~~~~~~~~~d~ 96 (564)
.++...|..+|+..++.+||++...-..........|++|.+||.||++...|..+|.+.. +.. .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~-~~~----------~l--- 68 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDK-FAE----------AL--- 68 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhH-HHh----------cC---
Confidence 3677889999999999999999821000111356789999999999999777778888741 110 00
Q ss_pred ccCCCCCCCCCCCCCCCCccchhhhHHHHhHhhHHHHHHhhcCCCcccccCCCCCCCCCChhhhHHHHHHHhcccccccc
Q 008456 97 YSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDF 176 (564)
Q Consensus 97 ~~~F~~s~f~gf~~~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~s~~~~~P~fG~~~s~~e~V~~FY~~W~~F~T~r~F 176 (564)
.++......|+..++..|.... .+....++|.+|..+.+...|..||.+|..|.+|+.|
T Consensus 69 ---------~~~~~~~~~~~~~~~~~~~v~~------------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y 127 (335)
T KOG0724|consen 69 ---------PLEKRLEDKIEEYIGLVFDVNI------------RESGQKPFPKYGKSDTSLAEVEEFYNFWPKFKSWRQY 127 (335)
T ss_pred ---------ccccccchhHHhhhhhHHHHhh------------hhccCCCccccCccccccccccccCCccccccccccC
Confidence 1111122334444555554332 1334568899999887778889999999999999999
Q ss_pred ccccccccCCCCChHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHhH
Q 008456 177 CWVDEYDVMAGPNRKSRRVM-----EEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDM 232 (564)
Q Consensus 177 sw~deyd~~~a~nR~~RR~m-----EkeNkK~R~k~kkE~n~~VR~LV~fvkkrDpRv~~~ 232 (564)
...++.+.....+|..+|++ .+.|...+.+.+......++.||.++...++++.-.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (335)
T KOG0724|consen 128 PQKDEPDEEDSENRSQSRYSGGTQRGKSNAEELRRKGTPVTERERKLVLLALKKDGKIDWR 188 (335)
T ss_pred CCCCCcccccccchhhhhhcccccccccchhhhhhccchhHHHHHHHHHhhhcccccccce
Confidence 98887765555889999999 589999999999999999999999999999999754
No 66
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=98.50 E-value=5e-08 Score=66.16 Aligned_cols=26 Identities=58% Similarity=0.957 Sum_probs=25.4
Q ss_pred cccccccccccCHHHHHHhHhhHHHH
Q 008456 299 FYCVLCGKKFKSEKQWTNHEQSKKHK 324 (564)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~SkkHk 324 (564)
|||++|+|.|.++.+|.+|++|++|+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CCcccCCCCcCCHHHHHHHHccCCCC
Confidence 79999999999999999999999997
No 67
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=98.10 E-value=1.8e-06 Score=61.28 Aligned_cols=32 Identities=41% Similarity=0.735 Sum_probs=30.2
Q ss_pred ccccccccccccCHHHHHHhHhhHHHHHHHHH
Q 008456 298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVAD 329 (564)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~ 329 (564)
.|+|.+|++.|.+..+|.+|.+|++|+++|++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~ 34 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence 58999999999999999999999999999875
No 68
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=97.98 E-value=4e-06 Score=55.37 Aligned_cols=25 Identities=52% Similarity=0.991 Sum_probs=24.4
Q ss_pred cccccccccccCHHHHHHhHhhHHH
Q 008456 299 FYCVLCGKKFKSEKQWTNHEQSKKH 323 (564)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~SkkH 323 (564)
|+|.+|++.|.+..+|..|++|++|
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence 6899999999999999999999999
No 69
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=1.2e-05 Score=93.09 Aligned_cols=56 Identities=34% Similarity=0.455 Sum_probs=47.4
Q ss_pred CCCCcCcccccCCCCC----CCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcC
Q 008456 2 ASEKRCLYEVLGLRKE----CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (564)
Q Consensus 2 a~~k~d~YevLGv~~~----As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLs 64 (564)
++.-.+-|+||.|+-+ -..+.||++|+|||.+|||||| | +-.++|..|++||+.|+
T Consensus 1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--P-----EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--P-----EGREMFERVNKAYELLS 1336 (2235)
T ss_pred ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--c-----hHHHHHHHHHHHHHHHH
Confidence 4445678999999863 3447899999999999999999 3 45789999999999998
No 70
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=3.1e-05 Score=77.34 Aligned_cols=53 Identities=34% Similarity=0.585 Sum_probs=47.5
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhh-hcC
Q 008456 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE-VLS 64 (564)
Q Consensus 7 d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYe-VLs 64 (564)
.+|.||||...|+.++++.||..||+.+|||.. +.+...+.|.+|.+||. ||+
T Consensus 48 e~fril~v~e~~~adevr~af~~lakq~hpdsg-----s~~adaa~f~qideafrkvlq 101 (342)
T KOG0568|consen 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSG-----SEEADAARFIQIDEAFRKVLQ 101 (342)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHcCCCCC-----CccccHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999998 23345789999999998 886
No 71
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=97.66 E-value=3.1e-05 Score=82.15 Aligned_cols=39 Identities=38% Similarity=0.635 Sum_probs=35.4
Q ss_pred hccCccccccccccccCHHHHHHhHhhHHHHHHHHHHHH
Q 008456 294 KKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (564)
Q Consensus 294 e~~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~ 332 (564)
+....+||.+|+|.|.|.+++.+|++||+|+.++..+.+
T Consensus 64 ~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r 102 (390)
T KOG2785|consen 64 EAESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR 102 (390)
T ss_pred hcccceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence 446678999999999999999999999999999998766
No 72
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=97.64 E-value=2.2e-05 Score=71.25 Aligned_cols=36 Identities=36% Similarity=0.758 Sum_probs=34.0
Q ss_pred cCccccccccccccCHHHHHHhHhhHHHHHHHHHHH
Q 008456 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR 331 (564)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~ 331 (564)
...|||..|.+.|.+.++|+.|.+||.|+++|+.|+
T Consensus 55 ~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~ 90 (129)
T KOG3408|consen 55 GGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELR 90 (129)
T ss_pred CceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcc
Confidence 457899999999999999999999999999999887
No 73
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00063 Score=60.78 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=43.0
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCCh
Q 008456 8 LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP 66 (564)
Q Consensus 8 ~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp 66 (564)
--.||||.++++.+.||.|+|++-+..|||+...| -.-..|++|+++|...
T Consensus 58 A~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--------YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 58 AALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--------YLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--------HHHHHHHHHHHHHhcc
Confidence 34599999999999999999999999999999443 2445699999999743
No 74
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=96.54 E-value=0.0015 Score=58.35 Aligned_cols=38 Identities=34% Similarity=0.712 Sum_probs=35.0
Q ss_pred cCccccccccccccCHHHHHHhHhhHHHHHHHHHHHHH
Q 008456 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRES 333 (564)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~~ 333 (564)
...+||..|.+.|.|+.+|..|.++|=|++.++.|+..
T Consensus 53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRev 90 (126)
T COG5112 53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKELREV 90 (126)
T ss_pred CceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcC
Confidence 45789999999999999999999999999999999854
No 75
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=96.19 E-value=0.0038 Score=46.06 Aligned_cols=32 Identities=38% Similarity=0.647 Sum_probs=20.4
Q ss_pred cccccccccccc--CHHHHHHhHhhHHHHHHHHH
Q 008456 298 EFYCVLCGKKFK--SEKQWTNHEQSKKHKEKVAD 329 (564)
Q Consensus 298 ~~~C~~C~K~F~--s~~~~~nH~~SkkHk~~~~~ 329 (564)
-+||..|++.|. |....++|+.+.+|+.+|++
T Consensus 3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~ 36 (38)
T PF06220_consen 3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR 36 (38)
T ss_dssp S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence 479999999994 34566999999999999975
No 76
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.85 E-value=0.0096 Score=65.84 Aligned_cols=51 Identities=35% Similarity=0.497 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchH---HHHHHHHHHHHHhhhc
Q 008456 13 GLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQA---EATAQFQELVHAYEVL 63 (564)
Q Consensus 13 Gv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~e---ea~~~F~~I~~AYeVL 63 (564)
+|..-.+.+.||++|||.+|..||||.+..|.+.. .|...|-.+++|+...
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 34456899999999999999999999976664433 4677777778877644
No 77
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.012 Score=56.20 Aligned_cols=71 Identities=27% Similarity=0.455 Sum_probs=56.3
Q ss_pred CcCcccccCCCC--CCCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456 5 KRCLYEVLGLRK--ECTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (564)
Q Consensus 5 k~d~YevLGv~~--~As~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (564)
..+||.++|... ...++-+.--|.-...++|||+...+.. ....|.+....|++||.+|.||-.|+.|=.-
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk 80 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK 80 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 357999998665 5667777778999999999999643321 2236888899999999999999999999764
No 78
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.01 Score=57.43 Aligned_cols=58 Identities=34% Similarity=0.569 Sum_probs=49.1
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCc---hHHHHHHHHHHHHHhhhc
Q 008456 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLS---QAEATAQFQELVHAYEVL 63 (564)
Q Consensus 6 ~d~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~---~eea~~~F~~I~~AYeVL 63 (564)
.+.|.+||+...+...+|+++|+++...+|||+-..-+.. ...+...++.|+.||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999997543432 236889999999999753
No 79
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.52 E-value=0.0091 Score=38.38 Aligned_cols=22 Identities=32% Similarity=0.806 Sum_probs=20.6
Q ss_pred cccccccccccCHHHHHHhHhh
Q 008456 299 FYCVLCGKKFKSEKQWTNHEQS 320 (564)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (564)
|.|..|++.|.+...|..|+++
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 5799999999999999999986
No 80
>PLN02748 tRNA dimethylallyltransferase
Probab=95.18 E-value=0.015 Score=64.54 Aligned_cols=38 Identities=24% Similarity=0.783 Sum_probs=33.9
Q ss_pred cCccccccccc-cccCHHHHHHhHhhHHHHHHHHHHHHH
Q 008456 296 RSEFYCVLCGK-KFKSEKQWTNHEQSKKHKEKVADLRES 333 (564)
Q Consensus 296 ~~~~~C~~C~K-~F~s~~~~~nH~~SkkHk~~~~~l~~~ 333 (564)
-..|+|.+|++ +|..+.+|.-|++|++|+.+++.+++.
T Consensus 416 ~~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~ 454 (468)
T PLN02748 416 WTQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQK 454 (468)
T ss_pred cccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhh
Confidence 35668999997 899999999999999999999988653
No 81
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.096 Score=57.57 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=69.9
Q ss_pred cCCCCCCCCCChhhhHHHHHHHhccccccccccccccccCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008456 146 EAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKR 225 (564)
Q Consensus 146 ~~P~fG~~~s~~e~V~~FY~~W~~F~T~r~Fsw~deyd~~~a~nR~~RR~mEkeNkK~R~k~kkE~n~~VR~LV~fvkkr 225 (564)
.+|.+| +..||..|.+|+|.--|.|. .|...-...+..++.|...+..++....+.-+..|++++.+++++
T Consensus 127 e~~~~~--------d~~~~ap~fg~~~t~ye~~~-~fY~~W~afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ 197 (508)
T KOG0717|consen 127 ELPFLG--------DSKLLYPLFGYSTTDYEQVV-PFYQFWLAFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQY 197 (508)
T ss_pred hhhhcc--------CCccccccccCCCCcHHHHH-HHHHHHHhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 466666 44789999999999999999 888888999999999999999999999999999999999999999
Q ss_pred ChhhHh
Q 008456 226 DKRVMD 231 (564)
Q Consensus 226 DpRv~~ 231 (564)
+.|+..
T Consensus 198 ak~eyN 203 (508)
T KOG0717|consen 198 ARQEYN 203 (508)
T ss_pred HHHHHH
Confidence 999865
No 82
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.08 E-value=0.034 Score=35.23 Aligned_cols=22 Identities=36% Similarity=0.922 Sum_probs=18.3
Q ss_pred cccccccccccCHHHHHHhHhh
Q 008456 299 FYCVLCGKKFKSEKQWTNHEQS 320 (564)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (564)
|.|..|++.|.+..+|..|+.+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 5799999999999999999875
No 83
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=93.66 E-value=0.038 Score=36.84 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=20.9
Q ss_pred ccccccccccccCHHHHHHhHhh
Q 008456 298 EFYCVLCGKKFKSEKQWTNHEQS 320 (564)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~S 320 (564)
.|.|..|++.|.+..+|..|.++
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~ 23 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRS 23 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCT
T ss_pred CCCCCccCCccCChhHHHHHhHH
Confidence 37899999999999999999864
No 84
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.052 Score=52.49 Aligned_cols=69 Identities=29% Similarity=0.398 Sum_probs=54.3
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456 7 CLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (564)
Q Consensus 7 d~YevLGv~~~A--s~~eIKkAYRklalk~HPDKn~~~g~-~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (564)
||.-++|+++.+ ..+.++..|+.+.+.+|||.....+. ....+...+..++.||.+|-||-.|+.|=..
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la 73 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA 73 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 466667777754 44568999999999999999965432 1223678899999999999999999999764
No 85
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]
Probab=92.96 E-value=0.059 Score=52.06 Aligned_cols=35 Identities=23% Similarity=0.539 Sum_probs=31.2
Q ss_pred cCccccccccccccCHHHHHHhHhhHHHHHHHHHH
Q 008456 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 330 (564)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l 330 (564)
.--|||.+|+=+|+---+|..|++-|+|..++--+
T Consensus 73 ~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms 107 (193)
T KOG4727|consen 73 KGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS 107 (193)
T ss_pred cCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence 35689999999999999999999999999987643
No 86
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=92.21 E-value=0.049 Score=46.14 Aligned_cols=31 Identities=35% Similarity=0.724 Sum_probs=26.4
Q ss_pred ccccccccccccCHHHHHHhHhhHHHHHHHH
Q 008456 298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVA 328 (564)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~ 328 (564)
.+.|.+|++.|.|..+|..|++++.|.....
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~ 80 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS 80 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence 5899999999999999999999999987654
No 87
>smart00355 ZnF_C2H2 zinc finger.
Probab=91.39 E-value=0.16 Score=32.29 Aligned_cols=21 Identities=38% Similarity=0.779 Sum_probs=19.6
Q ss_pred cccccccccccCHHHHHHhHh
Q 008456 299 FYCVLCGKKFKSEKQWTNHEQ 319 (564)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~ 319 (564)
+.|..|++.|.+...|..|++
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH
Confidence 469999999999999999987
No 88
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=91.13 E-value=0.12 Score=55.07 Aligned_cols=38 Identities=29% Similarity=0.560 Sum_probs=34.0
Q ss_pred ccCccccccccccccCHHHHHHhHhhHHHHHHHHHHHH
Q 008456 295 KRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (564)
Q Consensus 295 ~~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~ 332 (564)
....+||+.|++-|+..+-|..|+.+|-|.+++...+.
T Consensus 235 ~~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~ 272 (470)
T COG5188 235 WFPKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE 272 (470)
T ss_pred hccceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence 35678999999999999999999999999999886655
No 89
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.27 E-value=0.24 Score=50.06 Aligned_cols=36 Identities=31% Similarity=0.680 Sum_probs=33.3
Q ss_pred cCccccccccccccCHHHHHHhHhhHHHHHHHHHHHH
Q 008456 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (564)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~ 332 (564)
...+.|.+|+--.+ .+-|.-|.+||+|+.+|..|+.
T Consensus 33 sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs 68 (264)
T KOG3032|consen 33 SGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKS 68 (264)
T ss_pred CCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHh
Confidence 35679999999999 9999999999999999999994
No 90
>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]
Probab=88.21 E-value=0.13 Score=53.09 Aligned_cols=34 Identities=24% Similarity=0.621 Sum_probs=31.9
Q ss_pred ccccccccccccCHHHHHHhHhhHHHHHHHHHHH
Q 008456 298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR 331 (564)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~ 331 (564)
-|||..|-|.|..+|.|+-|..|-.|.+.+.+..
T Consensus 25 RwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~ 58 (309)
T KOG2837|consen 25 RWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFA 58 (309)
T ss_pred HHHHHHHHHHhccccccccccCCHHHHHHHHHHH
Confidence 4799999999999999999999999999998775
No 91
>PHA02768 hypothetical protein; Provisional
Probab=87.84 E-value=0.31 Score=39.04 Aligned_cols=25 Identities=24% Similarity=0.650 Sum_probs=22.7
Q ss_pred ccccccccccccCHHHHHHhHhhHHHH
Q 008456 298 EFYCVLCGKKFKSEKQWTNHEQSKKHK 324 (564)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SkkHk 324 (564)
.|.|..|+|.|....+|..|.++ |.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~--H~ 29 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRK--HN 29 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHh--cC
Confidence 36899999999999999999988 65
No 92
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=86.38 E-value=0.41 Score=37.41 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=23.5
Q ss_pred ccccccccccccCHHHHHHhHhhHHHHHHH
Q 008456 298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKV 327 (564)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~ 327 (564)
.-||..|.-.|.+ |..|+.|.+|+.-.
T Consensus 5 ~GYCE~C~~ky~~---l~~Hi~s~~Hr~FA 31 (49)
T PF07535_consen 5 PGYCENCRVKYDD---LEEHIQSEKHRKFA 31 (49)
T ss_pred CccCccccchhhh---HHHHhCCHHHHHHH
Confidence 4599999999986 88999999999654
No 93
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=85.71 E-value=0.46 Score=37.16 Aligned_cols=29 Identities=28% Similarity=0.537 Sum_probs=24.1
Q ss_pred cCccccccccccccCHHHHHHhHhhHHHHHHH
Q 008456 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKV 327 (564)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~ 327 (564)
...-||..|...|. -|..|..|++|+.=.
T Consensus 3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA 31 (49)
T smart00586 3 KKPGYCENCREKYD---DLETHLLSEKHRRFA 31 (49)
T ss_pred CCCcccccHhHHHh---hHHHHhccHHHHHHH
Confidence 34569999999997 578899999999643
No 94
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=85.37 E-value=0.83 Score=46.04 Aligned_cols=39 Identities=33% Similarity=0.604 Sum_probs=30.8
Q ss_pred cCccccccccccccCHHHHHHhHhhHHHHHHHHHHHHHhh
Q 008456 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFV 335 (564)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~~~~ 335 (564)
..-|-|..|.|.|+-..=+..|+. +||-+.|..+++++.
T Consensus 75 ~~K~~C~lc~KlFkg~eFV~KHI~-nKH~e~ve~~~~ev~ 113 (214)
T PF04959_consen 75 EDKWRCPLCGKLFKGPEFVRKHIF-NKHPEKVEEVKKEVE 113 (214)
T ss_dssp SEEEEE-SSS-EESSHHHHHHHHH-HH-HHHHHHHHHHHH
T ss_pred CCEECCCCCCcccCChHHHHHHHh-hcCHHHHHHHHHHHH
Confidence 356899999999999999999987 679999998886653
No 95
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=84.29 E-value=1.4 Score=40.99 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=35.8
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcC
Q 008456 8 LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (564)
Q Consensus 8 ~YevLGv~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLs 64 (564)
-..||||++.++.++|.+.|.+|-...+|++.. ..-.=..|..|.+.|.
T Consensus 60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG--------SfYLQSKV~rAKErl~ 108 (127)
T PF03656_consen 60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGG--------SFYLQSKVFRAKERLE 108 (127)
T ss_dssp HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS---------HHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCC--------CHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999872 2445556788888875
No 96
>PHA00616 hypothetical protein
Probab=80.67 E-value=0.86 Score=34.93 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=20.2
Q ss_pred cccccccccccCHHHHHHhHhh
Q 008456 299 FYCVLCGKKFKSEKQWTNHEQS 320 (564)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (564)
+-|.-|++.|....+|..|.++
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~ 23 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLS 23 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHH
Confidence 6799999999999999999954
No 97
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=76.78 E-value=2.1 Score=28.73 Aligned_cols=21 Identities=33% Similarity=0.828 Sum_probs=18.1
Q ss_pred cccccccccccCHHHHHHhHhh
Q 008456 299 FYCVLCGKKFKSEKQWTNHEQS 320 (564)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (564)
..|..|++.| +..++..|++.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 4799999999 88899999763
No 98
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.29 E-value=26 Score=41.53 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=9.9
Q ss_pred HHHhHHHHHHHHH-HHHHHHH
Q 008456 192 SRRVMEEENKKLR-KKAKREY 211 (564)
Q Consensus 192 ~RR~mEkeNkK~R-~k~kkE~ 211 (564)
-|+.|+.+.++.| ..++||.
T Consensus 332 RRq~leeqqqreree~eqkEr 352 (1118)
T KOG1029|consen 332 RRQALEEQQQREREEVEQKER 352 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3555665555555 3334433
No 99
>PF13446 RPT: A repeated domain in UCH-protein
Probab=62.92 E-value=16 Score=29.23 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.8
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHH
Q 008456 7 CLYEVLGLRKECTTDEIRSAYKKLAL 32 (564)
Q Consensus 7 d~YevLGv~~~As~~eIKkAYRklal 32 (564)
.-|.+|||+++++.+.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999998776
No 100
>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]
Probab=60.28 E-value=11 Score=36.51 Aligned_cols=42 Identities=26% Similarity=0.570 Sum_probs=32.4
Q ss_pred cccccccccccc--CHHHHHHhHhhHHHHHHHHHHHHHhhhhhH
Q 008456 298 EFYCVLCGKKFK--SEKQWTNHEQSKKHKEKVADLRESFVDEDE 339 (564)
Q Consensus 298 ~~~C~~C~K~F~--s~~~~~nH~~SkkHk~~~~~l~~~~~~e~~ 339 (564)
-|||..|+..-. |-..-+.|+.=+||+++|+-.=+++.+|.+
T Consensus 3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k~~eeqA 46 (165)
T KOG3454|consen 3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQKWMEEQA 46 (165)
T ss_pred cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 479999996443 456678999999999999998666664433
No 101
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=57.83 E-value=3.6 Score=44.10 Aligned_cols=33 Identities=24% Similarity=0.631 Sum_probs=29.8
Q ss_pred hhccCccccccccccccCHHHHHHhHhhHHHHH
Q 008456 293 EKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKE 325 (564)
Q Consensus 293 ee~~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~ 325 (564)
.+.-+-+.|..|.|.|+..+.|..|++-|.|++
T Consensus 190 kekL~r~~CLyCekifrdkntLkeHMrkK~Hrr 222 (423)
T KOG2482|consen 190 KEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRR 222 (423)
T ss_pred HHHHhhheeeeeccccCCcHHHHHHHHhccCcc
Confidence 355678899999999999999999999999985
No 102
>PHA00732 hypothetical protein
Probab=54.10 E-value=8.5 Score=32.87 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.8
Q ss_pred cccccccccccCHHHHHHhHhh
Q 008456 299 FYCVLCGKKFKSEKQWTNHEQS 320 (564)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (564)
|.|..|++.|.+...+..|.++
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~ 23 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARR 23 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhc
Confidence 5799999999999999999863
No 103
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=53.46 E-value=6 Score=26.48 Aligned_cols=15 Identities=33% Similarity=0.935 Sum_probs=12.5
Q ss_pred cCccccccccccccC
Q 008456 296 RSEFYCVLCGKKFKS 310 (564)
Q Consensus 296 ~~~~~C~~C~K~F~s 310 (564)
...|.|..|+|.|.+
T Consensus 12 ~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 12 EKPYKCPYCGKSFSN 26 (26)
T ss_dssp SSSEEESSSSEEESS
T ss_pred CCCCCCCCCcCeeCc
Confidence 356899999999975
No 104
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=51.44 E-value=49 Score=33.08 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=16.3
Q ss_pred HHhcChhhHhHHHHhHHHHHHHHHHH
Q 008456 222 VKKRDKRVMDMMVKKNEEIERKREEE 247 (564)
Q Consensus 222 vkkrDpRv~~~~~~~~~e~e~kk~ee 247 (564)
|--||||+..+++++..++.++.+++
T Consensus 184 vDprd~RF~emLqqkEkeekK~~Kea 209 (225)
T KOG4848|consen 184 VDPRDPRFEEMLQQKEKEEKKAVKEA 209 (225)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44799999988766555544443333
No 105
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=50.86 E-value=11 Score=37.50 Aligned_cols=38 Identities=26% Similarity=0.445 Sum_probs=33.0
Q ss_pred CccccccccccccCHHHHHHhHhhHHHHHHHHHHHHHh
Q 008456 297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 334 (564)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~~~ 334 (564)
..|.|..|.-.-.|+.++..|..-|||+.+|++-....
T Consensus 52 G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa~e 89 (222)
T KOG0227|consen 52 GKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKE 89 (222)
T ss_pred cceeehhhhhhhcchhhhhhhhccchhhHHHHHHHHHH
Confidence 46789999999999999999999999999988654433
No 106
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=50.06 E-value=26 Score=31.97 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCCh
Q 008456 16 KECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP 66 (564)
Q Consensus 16 ~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp 66 (564)
+..+..+++.|.|.+-++.|||.....+........-++.|+.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 456778899999999999999987433222333456677777777766643
No 107
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=46.42 E-value=10 Score=38.68 Aligned_cols=23 Identities=35% Similarity=0.897 Sum_probs=21.5
Q ss_pred cCccccccccccccCHHHHHHhH
Q 008456 296 RSEFYCVLCGKKFKSEKQWTNHE 318 (564)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~ 318 (564)
.+.|||..|+-.|++.-.|..|+
T Consensus 237 ~eh~YC~fCG~~y~~~edl~ehC 259 (268)
T KOG1994|consen 237 SEHYYCFFCGIKYKDEEDLYEHC 259 (268)
T ss_pred ccceEEEEeccccCCHHHHHHhC
Confidence 47899999999999999999997
No 108
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=46.20 E-value=15 Score=24.90 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=17.0
Q ss_pred cccccccccccCHHHHHHhHh
Q 008456 299 FYCVLCGKKFKSEKQWTNHEQ 319 (564)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~ 319 (564)
..|++|++.+ +..++..|..
T Consensus 2 v~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLD 21 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHH
Confidence 3699999999 7788888875
No 109
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=46.06 E-value=1.8e+02 Score=29.75 Aligned_cols=25 Identities=36% Similarity=0.607 Sum_probs=15.9
Q ss_pred hcChhhHhHHHHhHHHHHHHHHHHH
Q 008456 224 KRDKRVMDMMVKKNEEIERKREEEK 248 (564)
Q Consensus 224 krDpRv~~~~~~~~~e~e~kk~ee~ 248 (564)
.||||++.++.++..++.+++++.+
T Consensus 175 prdprF~eml~~kEkeeKKk~K~aK 199 (217)
T PF10147_consen 175 PRDPRFQEMLQEKEKEEKKKKKEAK 199 (217)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999888765544444433333
No 110
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=44.27 E-value=32 Score=35.36 Aligned_cols=18 Identities=39% Similarity=0.861 Sum_probs=14.3
Q ss_pred CccccccccccccCHHHH
Q 008456 297 SEFYCVLCGKKFKSEKQW 314 (564)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~ 314 (564)
-..||+.|+-.+.+.+++
T Consensus 83 ~~~~Cv~Cg~~i~~~~a~ 100 (236)
T PF12269_consen 83 LSIYCVTCGHEIPSKKAL 100 (236)
T ss_pred eeeeeeeCCCcCCHHHHH
Confidence 456999999988776665
No 111
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=43.45 E-value=20 Score=27.91 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=18.0
Q ss_pred ccccccccccccCHHHHHHhHhh
Q 008456 298 EFYCVLCGKKFKSEKQWTNHEQS 320 (564)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~S 320 (564)
.|-|+.|++ -.+..+|..|...
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~ 23 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCED 23 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHh
Confidence 578999999 5778899999764
No 112
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=42.14 E-value=15 Score=36.35 Aligned_cols=34 Identities=32% Similarity=0.680 Sum_probs=31.0
Q ss_pred CccccccccccccCHHHHHHhHhhHHHHHHHHHH
Q 008456 297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 330 (564)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l 330 (564)
..|.|..|.-.-.|++++..|..-|||+.++.+-
T Consensus 52 Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr 85 (222)
T COG5246 52 GKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR 85 (222)
T ss_pred CcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence 4678999999999999999999999999988754
No 113
>PF14968 CCDC84: Coiled coil protein 84
Probab=42.06 E-value=17 Score=39.15 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=29.7
Q ss_pred ccccccccccCHHHHHHhHhhHHHHHHHHHHHHHhhhhh
Q 008456 300 YCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDED 338 (564)
Q Consensus 300 ~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~~~~~e~ 338 (564)
||.+|+..+-. ...|.=|.+|++.+..+...+....
T Consensus 1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~~L~rf~~Kl 36 (336)
T PF14968_consen 1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSAFLSRFRSKL 36 (336)
T ss_pred CcchhhCcccc---cCCCccCHHHHHHHHHHHHHHHHHH
Confidence 89999987654 9999999999999998866655433
No 114
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=41.63 E-value=12 Score=30.39 Aligned_cols=28 Identities=29% Similarity=0.592 Sum_probs=23.2
Q ss_pred cCccccccccccccCHHHHHHhHhhHHHH
Q 008456 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHK 324 (564)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk 324 (564)
..-|.|+-|++.|.-.+.|..|.+ |.|.
T Consensus 15 E~~lrCPRC~~~FR~~K~Y~RHVN-KaH~ 42 (65)
T COG4049 15 EEFLRCPRCGMVFRRRKDYIRHVN-KAHG 42 (65)
T ss_pred ceeeeCCchhHHHHHhHHHHHHhh-HHhh
Confidence 356799999999999999999986 4443
No 115
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=40.50 E-value=8.3 Score=45.08 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=29.3
Q ss_pred cCccccccccccccCHHHHHHhHhhHHHHHHHH
Q 008456 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVA 328 (564)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~ 328 (564)
...|.|..|.|.|..-..|-.|+-|||-...+.
T Consensus 307 EKPfeCpnCkKRFSHSGSySSHmSSKKCIsli~ 339 (1007)
T KOG3623|consen 307 EKPFECPNCKKRFSHSGSYSSHMSSKKCISLIL 339 (1007)
T ss_pred CCCcCCcccccccccCCcccccccccchhhhhc
Confidence 468999999999999999999999999985443
No 116
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=38.40 E-value=8.3 Score=38.59 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=27.8
Q ss_pred ccCccccccccccccCHHHHHHhHhhHHHHHHHHHH
Q 008456 295 KRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 330 (564)
Q Consensus 295 ~~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l 330 (564)
....|||.+|+..|. .+.+.||..|--|+-.+..+
T Consensus 81 ~e~lfyCE~Cd~~ip-~~~~snH~tSttHllsl~~~ 115 (223)
T KOG2384|consen 81 DEALFYCEVCDIYIP-NSKKSNHFTSTTHLLSLQHI 115 (223)
T ss_pred CCccchhhhhhhhcc-CCCCccchhhHHHHhhhccC
Confidence 456899999987666 46789999999998776643
No 117
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=37.68 E-value=31 Score=36.71 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=30.5
Q ss_pred CccccccccccccCH-HHHHHhHhhHHHHHHHHHHHHHhh
Q 008456 297 SEFYCVLCGKKFKSE-KQWTNHEQSKKHKEKVADLRESFV 335 (564)
Q Consensus 297 ~~~~C~~C~K~F~s~-~~~~nH~~SkkHk~~~~~l~~~~~ 335 (564)
.-.||.+|.--|.+. .+..+|++-|.|+.+|++--..|.
T Consensus 9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kritdi~ 48 (336)
T KOG0150|consen 9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKRITDIH 48 (336)
T ss_pred cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHHHHHHH
Confidence 456899998877654 568899999999999987644443
No 118
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=37.36 E-value=44 Score=33.30 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcC
Q 008456 15 RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (564)
Q Consensus 15 ~~~As~~eIKkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLs 64 (564)
+++||.+||..|+.++..+|--|. ..-..|-.||+.|.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~------------~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDE------------KSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCH------------HHHHHHHHHHHHHH
Confidence 478999999999999999993333 23445888998665
No 119
>PTZ00448 hypothetical protein; Provisional
Probab=36.89 E-value=26 Score=38.13 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=32.9
Q ss_pred ccccccccccccCHHHHHHhHhhHHHHHHHHHHHHHh
Q 008456 298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 334 (564)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~~~ 334 (564)
.|.|..|+-.|.+......|.+|-=|+=++++-...+
T Consensus 314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~gL 350 (373)
T PTZ00448 314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKM 350 (373)
T ss_pred CccccccccccCCHHHHHHHhhhhHHHHHHHHHhcCC
Confidence 5789999999999999999999999999998765544
No 120
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=35.78 E-value=39 Score=32.93 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=32.8
Q ss_pred cccccccccccCHHHHHHhHhhHHHHHHHHHHHHHhhh
Q 008456 299 FYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVD 336 (564)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~~~~~ 336 (564)
|.|-.|.=.=-.+..+..|+.|+=|++-+..+.-.+-+
T Consensus 1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~tkl~k 38 (165)
T PF04988_consen 1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQTKLPK 38 (165)
T ss_pred CccceeeeecccHHHHHHHHccchHHHHHHHHHhcCCh
Confidence 67999997777899999999999999999988666644
No 121
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=34.70 E-value=36 Score=26.56 Aligned_cols=32 Identities=34% Similarity=0.694 Sum_probs=17.7
Q ss_pred ccccccccccCHHHHHHhHhhHHHHHHHHHHHHHh
Q 008456 300 YCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 334 (564)
Q Consensus 300 ~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~~~ 334 (564)
-|++|+..|..+.. ..-.+++...+..+..+|
T Consensus 22 ~CPlC~r~l~~e~~---~~li~~~~~~i~~~~~~l 53 (54)
T PF04423_consen 22 CCPLCGRPLDEEHR---QELIKKYKSEIEELPEKL 53 (54)
T ss_dssp E-TTT--EE-HHHH---HHHHHHHHHHHHHHHH--
T ss_pred cCCCCCCCCCHHHH---HHHHHHHHHHHHhhhhcc
Confidence 79999999988766 445555666666555543
No 122
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=34.36 E-value=7.3 Score=27.21 Aligned_cols=19 Identities=32% Similarity=0.871 Sum_probs=14.3
Q ss_pred cccccccccccCHHHHHHhH
Q 008456 299 FYCVLCGKKFKSEKQWTNHE 318 (564)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~ 318 (564)
|.|+-|.+.| +...+++|-
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht 19 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHT 19 (28)
T ss_dssp EEETTTTEEE-EGGGTTT--
T ss_pred CeeecCCCCc-CcCCcCCCC
Confidence 5699999999 677787774
No 123
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=34.07 E-value=13 Score=31.06 Aligned_cols=28 Identities=29% Similarity=0.605 Sum_probs=0.0
Q ss_pred ccccccccccCHHHHHHhHhhHHHHHHHH
Q 008456 300 YCVLCGKKFKSEKQWTNHEQSKKHKEKVA 328 (564)
Q Consensus 300 ~C~~C~K~F~s~~~~~nH~~SkkHk~~~~ 328 (564)
.|..|+..|.+..++..|+. ..|.-.+.
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~-~~H~~~~~ 28 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMK-KKHGFDIP 28 (100)
T ss_dssp -----------------------------
T ss_pred Cccccccccccccccccccc-cccccccc
Confidence 39999999999999999995 66665444
No 124
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=33.24 E-value=14 Score=40.36 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=23.5
Q ss_pred cCccccccccccccCHHHHHHhHhhHHHHHH
Q 008456 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEK 326 (564)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkkHk~~ 326 (564)
...-||..|.-.|.+ |+.|..|++|++-
T Consensus 420 tk~GYCENCreky~~---lE~Hi~s~~HrrF 447 (468)
T COG5067 420 TKKGYCENCREKYES---LEQHIVSEKHRRF 447 (468)
T ss_pred cccchhHHHHHHHHH---HHHHhhhhhhhhh
Confidence 345699999999975 8899999999863
No 125
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=33.22 E-value=22 Score=37.28 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=24.3
Q ss_pred cCccccccccccccCHHHHHHhHhhHH
Q 008456 296 RSEFYCVLCGKKFKSEKQWTNHEQSKK 322 (564)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~Skk 322 (564)
...+.|..|+|.|-|+-+|.-|+++-.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~ 185 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHT 185 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccC
Confidence 678899999999999999999998743
No 126
>PHA00733 hypothetical protein
Probab=31.26 E-value=34 Score=31.72 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=20.7
Q ss_pred ccccccccccccCHHHHHHhHhhHHH
Q 008456 298 EFYCVLCGKKFKSEKQWTNHEQSKKH 323 (564)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SkkH 323 (564)
.+.|..|+|.|.+..+|..|.. ++|
T Consensus 99 ~~~C~~CgK~F~~~~sL~~H~~-~~h 123 (128)
T PHA00733 99 SKVCPVCGKEFRNTDSTLDHVC-KKH 123 (128)
T ss_pred CccCCCCCCccCCHHHHHHHHH-Hhc
Confidence 4789999999999999999954 444
No 127
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=28.29 E-value=31 Score=25.45 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=16.0
Q ss_pred cCccccccccccccCH----HHHHHhHh
Q 008456 296 RSEFYCVLCGKKFKSE----KQWTNHEQ 319 (564)
Q Consensus 296 ~~~~~C~~C~K~F~s~----~~~~nH~~ 319 (564)
.....|..|++.|+.. +.|..|++
T Consensus 14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 14 KKKAKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp SS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred cCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 3556899999999874 88999984
No 128
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=28.01 E-value=94 Score=37.07 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=42.0
Q ss_pred HHHHHHHhccccccccccccccccCCCCChHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHh
Q 008456 161 TAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVME---EENKKLRKKAKREYNETVRELAAFVKKRDKRVMD 231 (564)
Q Consensus 161 ~~FY~~W~~F~T~r~Fsw~deyd~~~a~nR~~RR~mE---keNkK~R~k~kkE~n~~VR~LV~fvkkrDpRv~~ 231 (564)
...|.....|.+.|+-.. -.+...+-|..|||.- |.++-.--++|+ .+|.+.-|.++.+.-..+
T Consensus 359 ~k~~riiqq~q~~rstna---kk~s~lC~REarr~~~rs~K~~rt~~~rakr----~~Rem~~fwKk~er~~rd 425 (1185)
T KOG0388|consen 359 RKVHRIIQQYQSARSTNA---KKTSILCAREARRWQSRSYKTSRTNPIRAKR----IYREMYGFWKKNERNMRD 425 (1185)
T ss_pred HHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHhhhccccCcccchhHHHH----HHHHHHHHHHhhhHHHHH
Confidence 456666777777777322 2456678899999998 444444444444 467788888877665544
No 129
>PHA00733 hypothetical protein
Probab=27.11 E-value=41 Score=31.14 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.5
Q ss_pred CccccccccccccCHHHHHHhHhh
Q 008456 297 SEFYCVLCGKKFKSEKQWTNHEQS 320 (564)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~S 320 (564)
..|.|..|++.|.+...|..|...
T Consensus 72 kPy~C~~Cgk~Fss~s~L~~H~r~ 95 (128)
T PHA00733 72 SPYVCPLCLMPFSSSVSLKQHIRY 95 (128)
T ss_pred CCccCCCCCCcCCCHHHHHHHHhc
Confidence 457999999999999999999874
No 130
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=27.08 E-value=1.4e+02 Score=33.38 Aligned_cols=16 Identities=6% Similarity=0.407 Sum_probs=7.2
Q ss_pred HHhccccccccccccc
Q 008456 166 YWLGFSTVMDFCWVDE 181 (564)
Q Consensus 166 ~W~~F~T~r~Fsw~de 181 (564)
+|.-..|+--+-+++.
T Consensus 260 lwtl~Qq~i~~~~l~~ 275 (429)
T PRK00247 260 LWTLIQNIIMYLILER 275 (429)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445544444543
No 131
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=26.74 E-value=31 Score=41.22 Aligned_cols=23 Identities=30% Similarity=0.652 Sum_probs=21.3
Q ss_pred ccccccccccccCHHHHHHhHhh
Q 008456 298 EFYCVLCGKKFKSEKQWTNHEQS 320 (564)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~S 320 (564)
-.+|.+|+|.|.+..+|+.|+++
T Consensus 879 ~h~C~vCgk~FsSSsALqiH~rT 901 (958)
T KOG1074|consen 879 AHVCNVCGKQFSSSAALEIHMRT 901 (958)
T ss_pred hhhhccchhcccchHHHHHhhhc
Confidence 45899999999999999999986
No 132
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=23.64 E-value=43 Score=26.78 Aligned_cols=23 Identities=26% Similarity=0.689 Sum_probs=19.6
Q ss_pred cCccccccccccccCHHHHHHhH
Q 008456 296 RSEFYCVLCGKKFKSEKQWTNHE 318 (564)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~ 318 (564)
...+||.-|+-.|.+...|..|.
T Consensus 25 ~~~~YC~~Cg~~Y~d~~dL~~~C 47 (55)
T PF13821_consen 25 EEHNYCFWCGTKYDDEEDLERNC 47 (55)
T ss_pred hhCceeeeeCCccCCHHHHHhCC
Confidence 35679999999999999997764
No 133
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=23.37 E-value=62 Score=35.44 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=32.4
Q ss_pred ccccccccccccCHHHHHHhHhhHHHHHHHHHHHHHh
Q 008456 298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 334 (564)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~~~l~~~~ 334 (564)
.|.|..|...|.+.-.-..|-+|-=|+=+|++--..|
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~l 39 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASL 39 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcC
Confidence 4789999999999999999999999999888655444
No 134
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=22.14 E-value=1.6e+02 Score=22.58 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHhhhcCChhhhhhhhhc
Q 008456 24 RSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (564)
Q Consensus 24 KkAYRklalk~HPDKn~~~g~~~eea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (564)
...++...+..||+.+ ..+....|...|..|++..+..+++..
T Consensus 12 ~~~~~~~~~~~~~~~~---------~~~i~~~~~~~W~~l~~~~k~~y~~~a 54 (66)
T cd00084 12 SQEHRAEVKAENPGLS---------VGEISKILGEMWKSLSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHHHCcCCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4567777888899855 456788899999999988877777754
No 135
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=21.82 E-value=5.3e+02 Score=32.18 Aligned_cols=10 Identities=40% Similarity=0.554 Sum_probs=4.3
Q ss_pred HHHhHHHHHH
Q 008456 192 SRRVMEEENK 201 (564)
Q Consensus 192 ~RR~mEkeNk 201 (564)
+|..+++++.
T Consensus 436 ER~r~e~e~~ 445 (1021)
T PTZ00266 436 ERARIEKENA 445 (1021)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 136
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=21.49 E-value=59 Score=36.67 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=24.7
Q ss_pred ccccccccccccCHHHHHHhHhhHHHHHHH
Q 008456 298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKV 327 (564)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SkkHk~~~ 327 (564)
-|.|..|.+.|.+...+.+|.-++ |...+
T Consensus 57 FWiCp~CskkF~d~~~~~~H~~~e-H~~~l 85 (466)
T PF04780_consen 57 FWICPRCSKKFSDAESCLSHMEQE-HPAGL 85 (466)
T ss_pred EeeCCcccceeCCHHHHHHHHHHh-hhhhc
Confidence 468999999999999999999875 55554
No 137
>PHA00732 hypothetical protein
Probab=21.25 E-value=32 Score=29.42 Aligned_cols=21 Identities=24% Similarity=0.543 Sum_probs=17.0
Q ss_pred cccccccccccCHHHHHHhHhhHH
Q 008456 299 FYCVLCGKKFKSEKQWTNHEQSKK 322 (564)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~Skk 322 (564)
+.|..|++.|. .+..|..||-
T Consensus 28 ~~C~~CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 28 TKCPVCNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCEeC---ChhhhhcccC
Confidence 36999999998 4788887763
No 138
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=20.83 E-value=39 Score=40.36 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.6
Q ss_pred ccccccccccccCHHHHHHhHhhH
Q 008456 298 EFYCVLCGKKFKSEKQWTNHEQSK 321 (564)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~Sk 321 (564)
...|..|.|+|.|..+|+.|++|-
T Consensus 353 khkCr~CakvfgS~SaLqiHlRSH 376 (958)
T KOG1074|consen 353 KHKCRFCAKVFGSDSALQIHLRSH 376 (958)
T ss_pred cchhhhhHhhcCchhhhhhhhhcc
Confidence 347999999999999999999984
Done!