BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008457
(564 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
VLE GCG G L PD + + D SP ++ ++ TE V L ++
Sbjct: 41 VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKA---RENTEKNGIKNVKFLQANIF 97
Query: 139 SRQISPSSIDIVTMVFVLSAV-SPEKMSLVLQNIKKVLKPTGYV 181
S SS D + + FVL + SPE+ L+++KKVLKP G +
Sbjct: 98 SLPFEDSSFDHIFVCFVLEHLQSPEE---ALKSLKKVLKPGGTI 138
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 345 EYQHT-CRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADL-V 402
EY H L L E A + +L + G KVLE GCG G ++A + D +
Sbjct: 5 EYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEI 64
Query: 403 VATDGDSIALDLLAQNVTAN 422
+ D +L+ +N N
Sbjct: 65 TSIDISPESLEKARENTEKN 84
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD-GDSIALDLL 415
+W A +A L P ++AGK V ELG G G + + AD VVATD D L+ L
Sbjct: 60 VWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSL 119
Query: 416 AQNV---TANLKPPFLAKLITKRL---EWGNRDHIEAIKEENN-EGFEVILGTDVSYIPE 468
N+ TAN K + ++ WG D ++++ + F+V+L D+ +
Sbjct: 120 ESNIREHTANSCSSETVKRASPKVVPYRWG--DSPDSLQRCTGLQRFQVVLLADLLSFHQ 177
Query: 469 AILPLFATAKELTA 482
A L + K L A
Sbjct: 178 AHDALLRSVKXLLA 191
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 368 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSI---ALDLLAQN 418
+ +NP I K VL++GCG G + A A V+A D I A+D++ N
Sbjct: 37 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEILYQAMDIIRLN 90
>pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
Structural Genomics Consortium Target Id Bur219
Length = 220
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 10/158 (6%)
Query: 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD 137
+VLE G G GN L+ A V+ R + K+F+ T D
Sbjct: 48 NVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITE---------GDF 98
Query: 138 LSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLT 197
LS ++ P+SID + + ++ ++ ++ + ++L G ++F D D T
Sbjct: 99 LSFEV-PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKT 157
Query: 198 GKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDV 235
+ K + D +Y + ++F+ NGF V
Sbjct: 158 VEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHV 195
>pdb|3Q1Q|A Chain A, Structure Of A Bacterial Ribonuclease P Holoenzyme In
Complex With Trna
pdb|3Q1R|A Chain A, Crystal Structure Of A Bacterial Rnase P Holoenzyme In
Complex With Trna And In The Presence Of 5' Leader
Length = 118
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 219 FSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 263
N++ LF++NG D LG+ K+ +A +RWV+ +F
Sbjct: 28 LQNEYFVVLFRKNGLDYSRLGIVVKRKFGKATRRNKLKRWVREIF 72
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVS--TFVCDLISD 136
VL++G G G + Y + D VN+ RVS + +D
Sbjct: 59 VLDIGSGLGGGCMYINEKYG-AHTHGIDICSNIVNMA-------NERVSGNNKIIFEAND 110
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186
L+++ ++ D++ + A+S E + + Q K LKPTG +L DY
Sbjct: 111 ILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160
>pdb|1NZ0|A Chain A, Rnase P Protein From Thermotoga Maritima
pdb|1NZ0|C Chain C, Rnase P Protein From Thermotoga Maritima
pdb|1NZ0|B Chain B, Rnase P Protein From Thermotoga Maritima
pdb|1NZ0|D Chain D, Rnase P Protein From Thermotoga Maritima
Length = 118
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 219 FSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 263
N++ LF++NG D LG+ K+ +A +RWV+ +F
Sbjct: 28 LQNEYFVVLFRKNGXDYSRLGIVVKRKFGKATRRNKLKRWVREIF 72
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMT--HKDFTETRVSTFVCDLIS 135
++L++GCG+G L A V D + A+ L T + +
Sbjct: 33 EILDIGCGSGKISLEL--ASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVE 90
Query: 136 DDLSRQISPSSIDIVTM-VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187
+ S SS D M F+ S P++ S +++ + +VLKP Y+ ++
Sbjct: 91 NASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG 143
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 368 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSI---ALDLLAQN 418
+ +NP I K VL++GCG G + A A V+ D I A+D++ N
Sbjct: 56 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN 109
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVS--TFVCDLISD 136
VL++G G G + Y + D VN+ RVS + +D
Sbjct: 59 VLDIGSGLGGGCMYINEKYG-AHTHGIDICSNIVNMA-------NERVSGNNKIIFEAND 110
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186
L+++ ++ D++ + +S E + + Q K LKPTG +L DY
Sbjct: 111 ILTKEFPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTLLITDY 160
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVS--TFVCDLISD 136
VL++G G G + Y + D VN+ RVS + +D
Sbjct: 59 VLDIGSGLGGGCMYINEKYG-AHTHGIDICSNIVNMA-------NERVSGNNKIIFEAND 110
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186
L+++ ++ D++ + +S E + + Q K LKPTG +L DY
Sbjct: 111 ILTKEFPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTLLITDY 160
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS 135
R VL++ CG G F L+ Y V D S + + E+ V V D
Sbjct: 39 RGKVLDLACGVGGFSF-LLEDY-GFEVVGVDISEDXIRKAREYAKSRESNVEFIVGD--- 93
Query: 136 DDLSRQIS--PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTG 179
+R++S + D V + + P +++ V + +++VLKP+G
Sbjct: 94 ---ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG 136
>pdb|1M06|G Chain G, Structural Studies Of Bacteriophage Alpha3 Assembly, X-Ray
Crystallography
pdb|1M0F|G Chain G, Structural Studies Of Bacteriophage Alpha3 Assembly, Cryo-
Electron Microscopy
pdb|1RB8|G Chain G, The Phix174 Dna Binding Protein J In Two Different Capsid
Environments
Length = 187
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 11/61 (18%)
Query: 354 GLMLWESAHLMAAVLARNPTIVAGKKV----LELGCGCGGICSMVAAGSADLVVATDGDS 409
G++ +ESA + PT +AG +V +E+ G GG+CS + D+ T G++
Sbjct: 98 GIVRFESA-------SEQPTSIAGSEVEHYPIEMSVGSGGVCSARDCATVDIHPRTSGNN 150
Query: 410 I 410
+
Sbjct: 151 V 151
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 6/139 (4%)
Query: 83 GCGAGNTI-FPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTF--VCDLISDDLS 139
GC A T+ P + +Y + + +P A L + K T S + + L + +
Sbjct: 288 GCSARGTLDLPQVTSYDYDALLDEEGNPTAKYLAV--KKMMATHFSEYPQLEPLYKESME 345
Query: 140 RQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGK 199
P ++ V++ L ++S SL Q ++++ + GY+L+R D +ERL
Sbjct: 346 LDAIPL-VEKVSLFETLDSLSSPVESLYPQKMEELGQSYGYLLYRTETNWDAEEERLRII 404
Query: 200 DQKISENFYVRGDGTRAFY 218
D + YV G + Y
Sbjct: 405 DGRDRAQLYVDGQWVKTQY 423
>pdb|4E2Z|A Chain A, X-Ray Structure Of The H225n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 20/157 (12%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
++E+GC G ++ + V F P + + R + F +DD+
Sbjct: 111 IVEIGCNDGI----MLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVR-TDFFEKATADDV 165
Query: 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG 198
R P+ +++ L + + VL+ + +L P G +F D +GD+ + T
Sbjct: 166 RRTEGPA--NVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAK--TS 219
Query: 199 KDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDV 235
DQ ENF F FS + + + GF++
Sbjct: 220 FDQIYDENF---------FLFSATSVQGMAQRCGFEL 247
>pdb|3LCC|A Chain A, Structure Of A Sam-Dependent Halide Methyltransferase From
Arabidopsis Thaliana
Length = 235
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Query: 83 GCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQI 142
GCG G+ + + A P+ FV D S A L ++ + + + + + +D+
Sbjct: 74 GCGGGHDVVAM--ASPERFVVGLDISESA--LAKANETYGSSPKAEYFS-FVKEDVFTWR 128
Query: 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD 190
D++ A+ PE +++ ++LKP G ++ Y I D
Sbjct: 129 PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITD 176
>pdb|2IIP|A Chain A, Human Nicotinamide N-Methyltransferase
pdb|2IIP|B Chain B, Human Nicotinamide N-Methyltransferase
pdb|2IIP|C Chain C, Human Nicotinamide N-Methyltransferase
pdb|2IIP|D Chain D, Human Nicotinamide N-Methyltransferase
pdb|3ROD|A Chain A, Methyltransferase
pdb|3ROD|B Chain B, Methyltransferase
pdb|3ROD|C Chain C, Methyltransferase
pdb|3ROD|D Chain D, Methyltransferase
Length = 283
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 65/192 (33%), Gaps = 44/192 (22%)
Query: 42 KKYWDLFYK---RHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-- 96
+ Y + +YK RH +H L K + F G K L + G+G TI+ L++A
Sbjct: 37 RDYLEKYYKFGSRHSAESQILKHLL-KNLFKIFCLDGVKGDLLIDIGSGPTIYQLLSACE 95
Query: 97 ---------YPD---------------------VFVYACDFSPRAVNLVMTHKDFTETRV 126
Y D V Y CD V + +
Sbjct: 96 SFKEIVVTDYSDQNLQELEKWLKAAPAAFDWSPVVTYVCDLEGNRVKGPEKEEKLRQAVK 155
Query: 127 STFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSL--VLQNIKKVLKPTGYVLFR 184
CD+ + D V L A P+ + L+N+ +LKP G+++
Sbjct: 156 QVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRALRNLGSLLKPGGFLVIM 215
Query: 185 D------YAIGD 190
D Y IG+
Sbjct: 216 DALKSSYYMIGE 227
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLL 415
+W+ + +L P G+ +L+LGCG G + +A A+ V+ TD + ++
Sbjct: 41 FVWQYGEDLLQLLNPQP----GEFILDLGCGTGQLTEKIAQSGAE-VLGTDNAATXIEKA 95
Query: 416 AQN 418
QN
Sbjct: 96 RQN 98
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVS--TFVCDLISD 136
VL++G G G + Y + D VN RVS + +D
Sbjct: 59 VLDIGSGLGGGCXYINEKYG-AHTHGIDICSNIVNXA-------NERVSGNNKIIFEAND 110
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186
L+++ ++ D++ + +S E + + Q K LKPTG +L DY
Sbjct: 111 ILTKEFPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTLLITDY 160
>pdb|3E23|A Chain A, Crystal Structure Of The Rpa2492 Protein In Complex With
Sam From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr299
Length = 211
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDG 407
+ AG K+LELGCG G A D V ATDG
Sbjct: 41 LPAGAKILELGCGAGYQAEAXLAAGFD-VDATDG 73
>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
Length = 241
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE 194
P S D++ + +V+ ++ + ++ L+ K L+P G ++ +D ++AQE
Sbjct: 144 PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD----NMAQE 190
>pdb|1Q2B|A Chain A, Cellobiohydrolase Cel7a With Disulphide Bridge Added
Across Exo-Loop By Mutations D241c And D249c
Length = 434
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGI 390
+WE A+ ++ L +P G+++ E GCGCGG
Sbjct: 215 IWE-ANSISEALTPHPCTTVGQEICE-GCGCGGT 246
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVA--AGSADLVVATD 406
++AH +A +A + G+K+LE+GCG G + +++A GS+ V D
Sbjct: 28 QTAHRLA--IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>pdb|4E2X|A Chain A, X-Ray Structure Of The Y222f Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Dtdp
Length = 416
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 20/157 (12%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
++E+GC G ++ + V F P + + R + F +DD+
Sbjct: 111 IVEIGCNDGI----MLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVR-TDFFEKATADDV 165
Query: 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG 198
R P+ +++ L + + VL+ + +L P G +F D +GD+ + T
Sbjct: 166 RRTEGPA--NVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAK--TS 219
Query: 199 KDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDV 235
DQ E+F F FS + + + GF++
Sbjct: 220 FDQIFDEHF---------FLFSATSVQGMAQRCGFEL 247
>pdb|3NDI|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosylmethionine And Dtmp
pdb|3NDJ|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosyl-L-Homocysteine And Sugar Product
pdb|4E32|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Dtdp-Sugar
Substrate
pdb|4E33|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Reduced
Dtdp-Sugar Substrate
Length = 416
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 20/157 (12%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
++E+GC G ++ + V F P + + R + F +DD+
Sbjct: 111 IVEIGCNDGI----MLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVR-TDFFEKATADDV 165
Query: 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG 198
R P+ +++ L + + VL+ + +L P G +F D +GD+ + T
Sbjct: 166 RRTEGPA--NVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAK--TS 219
Query: 199 KDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDV 235
DQ E+F F FS + + + GF++
Sbjct: 220 FDQIYDEHF---------FLFSATSVQGMAQRCGFEL 247
>pdb|4E31|A Chain A, X-Ray Structure Of The Y76f Mutant Of Tcab9, A
C-3'-Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 20/157 (12%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
++E+GC G ++ + V F P + + R + F +DD+
Sbjct: 111 IVEIGCNDGI----MLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVR-TDFFEKATADDV 165
Query: 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG 198
R P+ +++ L + + VL+ + +L P G +F D +GD+ + T
Sbjct: 166 RRTEGPA--NVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAK--TS 219
Query: 199 KDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDV 235
DQ E+F F FS + + + GF++
Sbjct: 220 FDQIYDEHF---------FLFSATSVQGMAQRCGFEL 247
>pdb|4E2W|A Chain A, X-Ray Structure Of The H181n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 30/162 (18%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
++E+GC G ++ + V F P + + R + F +DD+
Sbjct: 111 IVEIGCNDGI----MLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVR-TDFFEKATADDV 165
Query: 139 SRQISPSSI-----DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQ 193
R P+++ + + +V S VL+ + +L P G +F D +GD+
Sbjct: 166 RRTEGPANVIYAANTLCNIPYVQS---------VLEGVDALLAPDGVFVFEDPYLGDIVA 216
Query: 194 ERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDV 235
+ T DQ E+F F FS + + + GF++
Sbjct: 217 K--TSFDQIYDEHF---------FLFSATSVQGMAQRCGFEL 247
>pdb|2CWL|A Chain A, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
From Thermus Thermophilus Hb8
pdb|2CWL|B Chain B, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
From Thermus Thermophilus Hb8
Length = 302
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 40 EAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAG-NTIFPLIAAYP 98
EAKKY DL + R+ RF + + ++ G + GA +D EV G T P+ A
Sbjct: 220 EAKKYMDLGFHRNLYRFSPEDY---RDLGLIWKGASPEDGTEVVVVDGPPTGGPVFDAGH 276
Query: 99 DVFVYACDFSP 109
D +A +F P
Sbjct: 277 DAAEFAPEFHP 287
>pdb|2V8T|A Chain A, Crystal Structure Of Mn Catalase From Thermus Thermophilus
Complexed With Chloride
pdb|2V8T|B Chain B, Crystal Structure Of Mn Catalase From Thermus Thermophilus
Complexed With Chloride
pdb|2V8U|A Chain A, Atomic Resolution Structure Of Mn Catalase From Thermus
Thermophilus
pdb|2V8U|B Chain B, Atomic Resolution Structure Of Mn Catalase From Thermus
Thermophilus
Length = 302
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 40 EAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAG-NTIFPLIAAYP 98
EAKKY DL + R+ RF + + ++ G + GA +D EV G T P+ A
Sbjct: 220 EAKKYMDLGFHRNLYRFSPEDY---RDLGLIWKGASPEDGTEVVVVDGPPTGGPVFDAGH 276
Query: 99 DVFVYACDFSP 109
D +A +F P
Sbjct: 277 DAAEFAPEFHP 287
>pdb|1KL7|A Chain A, Crystal Structure Of Threonine Synthase From Yeast
pdb|1KL7|B Chain B, Crystal Structure Of Threonine Synthase From Yeast
Length = 514
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 141 QISPSSIDIVTMVFVLSAVSPEKMSLVLQNI-KKVLKPTGYVLFRDYAIGDLAQERLTGK 199
Q+ S I+ + F VS E+ S ++ I + + P Y+L A+G A ERL K
Sbjct: 377 QVDKSIIEGASKDFTSERVSNEETSETIKKIYESSVNPKHYILDPHTAVGVCATERLIAK 436
Query: 200 DQKIS 204
D S
Sbjct: 437 DNDKS 441
>pdb|3E8S|A Chain A, Crystal Structure Of Putative Sam Dependent
Methyltransferase In Complex With Sah (Np_744700.1) From
Pseudomonas Putida Kt2440 At 2.10 A Resolution
Length = 227
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALD 413
++ A+L R P ++VL+LGCG G + +A + V DGD +D
Sbjct: 44 ILLAILGRQP-----ERVLDLGCGEGWLLRALADRGIE-AVGVDGDRTLVD 88
>pdb|1XDZ|A Chain A, Crystal Structure Of Gram_positive Bacillus Subtilis
Glucose Inhibited Division Protein B (Gidb), Structural
Genomics, Mcsg
Length = 240
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 60 RHYLDKEWGRYFSGAGRKDVL-EVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH 118
+H+ D ++ + + + +VG GAG P+ +P + V D + + +
Sbjct: 54 KHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKL 113
Query: 119 KDFTETRVSTFVCDLISDDLSRQISPSSIDIVT--MVFVLSAVSPEKMSLVLQN 170
+ + +TF D R+ S DIVT V LS +S + LV +N
Sbjct: 114 SEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAVARLSVLSELCLPLVKKN 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,581,993
Number of Sequences: 62578
Number of extensions: 631515
Number of successful extensions: 1804
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1770
Number of HSP's gapped (non-prelim): 56
length of query: 564
length of database: 14,973,337
effective HSP length: 104
effective length of query: 460
effective length of database: 8,465,225
effective search space: 3894003500
effective search space used: 3894003500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)