Query 008457
Match_columns 564
No_of_seqs 444 out of 5498
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 12:24:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2361 Predicted methyltransf 100.0 2.4E-34 5.3E-39 257.6 16.6 251 16-267 10-264 (264)
2 PLN02336 phosphoethanolamine N 100.0 1.8E-28 4E-33 259.5 32.8 367 66-525 28-413 (475)
3 PF10294 Methyltransf_16: Puta 99.9 6.3E-27 1.4E-31 211.6 12.5 153 350-516 13-172 (173)
4 COG2227 UbiG 2-polyprenyl-3-me 99.9 1.6E-22 3.5E-27 183.8 11.8 207 26-248 9-224 (243)
5 PLN02396 hexaprenyldihydroxybe 99.9 9.1E-21 2E-25 186.7 18.6 214 24-247 71-297 (322)
6 COG2226 UbiE Methylase involve 99.9 1.4E-20 3E-25 175.2 17.1 192 31-237 11-221 (238)
7 PF01209 Ubie_methyltran: ubiE 99.8 1.2E-20 2.6E-25 178.2 9.5 197 32-238 8-218 (233)
8 KOG3201 Uncharacterized conser 99.8 3.1E-20 6.6E-25 155.7 6.9 159 351-524 3-164 (201)
9 PLN02233 ubiquinone biosynthes 99.8 7.1E-19 1.5E-23 170.3 17.0 199 31-240 33-248 (261)
10 KOG1270 Methyltransferases [Co 99.8 1.2E-19 2.6E-24 165.8 9.6 216 21-248 26-258 (282)
11 PLN02244 tocopherol O-methyltr 99.8 3.1E-18 6.7E-23 172.3 14.5 155 74-241 117-279 (340)
12 PTZ00098 phosphoethanolamine N 99.8 2E-17 4.3E-22 160.4 16.7 159 65-240 42-202 (263)
13 PRK11036 putative S-adenosyl-L 99.8 7.4E-18 1.6E-22 163.4 13.3 196 36-239 5-206 (255)
14 PRK11783 rlmL 23S rRNA m(2)G24 99.7 3.9E-15 8.4E-20 163.3 34.4 185 327-542 500-698 (702)
15 PRK14103 trans-aconitate 2-met 99.7 4.6E-17 1E-21 157.9 17.1 160 66-238 20-182 (255)
16 TIGR02752 MenG_heptapren 2-hep 99.7 5.5E-17 1.2E-21 155.3 16.0 201 31-241 5-219 (231)
17 PF13489 Methyltransf_23: Meth 99.7 3.6E-17 7.8E-22 147.3 13.7 141 73-237 20-160 (161)
18 PRK01544 bifunctional N5-gluta 99.7 1.6E-15 3.5E-20 159.7 25.9 311 75-522 138-484 (506)
19 KOG1540 Ubiquinone biosynthesi 99.7 4.6E-16 1E-20 141.3 18.0 190 34-237 63-278 (296)
20 PRK11207 tellurite resistance 99.7 1.4E-16 3.1E-21 147.7 15.2 149 65-239 20-169 (197)
21 TIGR03840 TMPT_Se_Te thiopurin 99.7 5.8E-16 1.2E-20 144.4 17.0 171 44-239 2-186 (213)
22 TIGR00477 tehB tellurite resis 99.7 2.4E-16 5.1E-21 146.0 13.7 148 66-239 21-168 (195)
23 PLN02490 MPBQ/MSBQ methyltrans 99.7 6.4E-16 1.4E-20 152.8 17.4 147 74-242 112-258 (340)
24 PF12847 Methyltransf_18: Meth 99.7 1.6E-16 3.5E-21 133.7 11.2 107 75-185 1-111 (112)
25 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.5E-16 3.3E-21 153.2 12.5 162 74-241 55-231 (247)
26 PRK10258 biotin biosynthesis p 99.7 9E-16 2E-20 148.7 17.3 175 32-235 8-182 (251)
27 TIGR02021 BchM-ChlM magnesium 99.7 3.1E-16 6.7E-21 148.6 13.4 195 32-242 4-208 (219)
28 PRK15068 tRNA mo(5)U34 methylt 99.7 1.5E-15 3.3E-20 151.1 18.3 158 70-242 117-276 (322)
29 COG2230 Cfa Cyclopropane fatty 99.7 1.2E-16 2.6E-21 151.3 9.7 157 68-240 65-223 (283)
30 TIGR00740 methyltransferase, p 99.7 5.2E-16 1.1E-20 149.1 14.1 159 74-238 52-225 (239)
31 PRK05134 bifunctional 3-demeth 99.7 5.3E-16 1.2E-20 148.7 14.0 201 28-239 3-204 (233)
32 KOG4300 Predicted methyltransf 99.7 6.5E-16 1.4E-20 135.6 13.2 161 70-241 71-233 (252)
33 PF08241 Methyltransf_11: Meth 99.7 3.3E-16 7.1E-21 127.5 10.4 95 80-183 1-95 (95)
34 PF02353 CMAS: Mycolic acid cy 99.7 2.7E-16 5.9E-21 151.9 11.6 164 66-242 53-219 (273)
35 PLN02336 phosphoethanolamine N 99.7 1.1E-15 2.4E-20 162.1 16.3 157 66-240 257-414 (475)
36 PLN02585 magnesium protoporphy 99.7 1.6E-15 3.5E-20 149.1 15.5 152 75-242 144-301 (315)
37 PRK06202 hypothetical protein; 99.7 1.9E-15 4E-20 144.6 15.5 158 74-240 59-222 (232)
38 PRK13255 thiopurine S-methyltr 99.7 4.2E-15 9.1E-20 139.2 17.2 173 43-240 4-190 (218)
39 TIGR00452 methyltransferase, p 99.6 1.7E-15 3.6E-20 148.7 14.1 160 70-244 116-277 (314)
40 PRK12335 tellurite resistance 99.6 3E-15 6.5E-20 147.4 16.0 140 74-239 119-258 (287)
41 PF03848 TehB: Tellurite resis 99.6 2.3E-15 4.9E-20 135.9 13.4 146 67-238 22-167 (192)
42 PRK01683 trans-aconitate 2-met 99.6 3.3E-15 7.2E-20 145.4 15.7 161 65-237 21-184 (258)
43 PRK07580 Mg-protoporphyrin IX 99.6 2.9E-15 6.3E-20 143.4 15.0 194 32-242 12-216 (230)
44 smart00828 PKS_MT Methyltransf 99.6 2.4E-15 5.2E-20 143.2 13.4 144 77-242 1-146 (224)
45 COG4106 Tam Trans-aconitate me 99.6 1.9E-15 4.1E-20 133.8 10.6 193 65-271 20-214 (257)
46 COG4123 Predicted O-methyltran 99.6 1.1E-14 2.3E-19 135.7 15.8 166 351-539 23-207 (248)
47 PF13847 Methyltransf_31: Meth 99.6 3.1E-15 6.7E-20 133.2 11.6 109 74-187 2-112 (152)
48 KOG2793 Putative N2,N2-dimethy 99.6 7.2E-15 1.6E-19 136.8 13.2 163 349-525 48-227 (248)
49 PRK00216 ubiE ubiquinone/menaq 99.6 1.8E-14 4E-19 138.7 16.5 167 68-241 44-226 (239)
50 COG3897 Predicted methyltransf 99.6 2.5E-15 5.3E-20 131.3 9.1 131 351-505 54-184 (218)
51 PRK08317 hypothetical protein; 99.6 8.9E-15 1.9E-19 141.0 14.1 163 68-240 12-176 (241)
52 TIGR03587 Pse_Me-ase pseudamin 99.6 1.4E-14 3E-19 134.5 14.8 104 74-188 42-145 (204)
53 PF13649 Methyltransf_25: Meth 99.6 2.1E-15 4.5E-20 124.2 8.0 97 79-179 1-101 (101)
54 PRK11873 arsM arsenite S-adeno 99.6 1.4E-14 2.9E-19 142.2 15.2 154 73-240 75-230 (272)
55 PF08003 Methyltransf_9: Prote 99.6 2.1E-14 4.5E-19 135.9 15.6 207 21-242 56-269 (315)
56 PRK05785 hypothetical protein; 99.6 1.4E-14 3.1E-19 137.0 14.6 131 30-178 8-140 (226)
57 PRK06922 hypothetical protein; 99.6 8.3E-15 1.8E-19 153.1 13.9 151 36-188 371-540 (677)
58 PF05401 NodS: Nodulation prot 99.6 1.5E-14 3.1E-19 128.5 13.3 160 71-268 39-199 (201)
59 PRK15001 SAM-dependent 23S rib 99.6 9.1E-13 2E-17 132.4 27.9 147 327-501 189-341 (378)
60 TIGR02716 C20_methyl_CrtF C-20 99.6 1.3E-14 2.9E-19 144.6 14.8 160 69-238 143-304 (306)
61 PF08242 Methyltransf_12: Meth 99.6 5.2E-16 1.1E-20 127.4 3.5 98 80-181 1-99 (99)
62 TIGR01983 UbiG ubiquinone bios 99.6 1.2E-14 2.5E-19 138.6 13.1 195 36-239 4-202 (224)
63 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 2.8E-14 6.1E-19 135.8 15.7 168 67-241 31-211 (223)
64 KOG1271 Methyltransferases [Ge 99.6 2.1E-14 4.6E-19 123.5 12.0 127 76-237 68-202 (227)
65 TIGR02072 BioC biotin biosynth 99.6 2.4E-14 5.3E-19 137.9 13.8 142 74-238 33-174 (240)
66 COG2813 RsmC 16S RNA G1207 met 99.6 6.4E-13 1.4E-17 126.3 22.1 136 334-501 126-267 (300)
67 PF05175 MTS: Methyltransferas 99.6 6.2E-14 1.3E-18 126.9 14.2 136 337-503 2-143 (170)
68 PRK13256 thiopurine S-methyltr 99.6 2.2E-13 4.7E-18 126.7 17.7 173 42-239 9-196 (226)
69 PRK11705 cyclopropane fatty ac 99.5 2.2E-13 4.8E-18 138.6 17.2 152 69-240 161-312 (383)
70 TIGR03438 probable methyltrans 99.5 5.9E-13 1.3E-17 131.8 19.6 112 74-185 62-177 (301)
71 TIGR02081 metW methionine bios 99.5 1E-13 2.2E-18 128.6 13.2 161 74-248 12-175 (194)
72 PRK00107 gidB 16S rRNA methylt 99.5 2.9E-13 6.4E-18 123.3 15.1 126 75-242 45-171 (187)
73 PF05891 Methyltransf_PK: AdoM 99.5 5.9E-14 1.3E-18 127.1 10.1 148 75-242 55-203 (218)
74 PF07021 MetW: Methionine bios 99.5 2.5E-13 5.5E-18 120.6 13.1 152 74-242 12-169 (193)
75 PRK00121 trmB tRNA (guanine-N( 99.5 1E-13 2.3E-18 129.0 11.0 139 65-236 31-177 (202)
76 TIGR00537 hemK_rel_arch HemK-r 99.5 6.4E-13 1.4E-17 121.6 15.2 130 74-241 18-166 (179)
77 TIGR00138 gidB 16S rRNA methyl 99.5 7.7E-13 1.7E-17 120.5 15.6 100 74-184 41-141 (181)
78 smart00138 MeTrc Methyltransfe 99.5 1.5E-13 3.2E-18 133.1 11.5 107 74-184 98-241 (264)
79 PF05724 TPMT: Thiopurine S-me 99.5 8.4E-13 1.8E-17 123.3 15.9 174 42-241 3-191 (218)
80 PRK08287 cobalt-precorrin-6Y C 99.5 7.7E-13 1.7E-17 122.0 15.0 130 68-238 24-154 (187)
81 PRK04266 fibrillarin; Provisio 99.5 1.2E-12 2.6E-17 123.1 15.7 145 70-241 67-211 (226)
82 PRK09489 rsmC 16S ribosomal RN 99.5 5.4E-11 1.2E-15 119.0 28.1 134 337-503 167-306 (342)
83 TIGR00537 hemK_rel_arch HemK-r 99.5 1.5E-12 3.3E-17 119.2 15.6 138 361-527 8-166 (179)
84 PLN02244 tocopherol O-methyltr 99.5 2.3E-12 5E-17 129.8 17.9 146 362-526 99-278 (340)
85 PRK15068 tRNA mo(5)U34 methylt 99.5 4.1E-12 8.9E-17 126.5 18.9 169 357-547 104-294 (322)
86 COG2264 PrmA Ribosomal protein 99.5 9.7E-13 2.1E-17 126.0 13.5 135 365-525 153-287 (300)
87 PF06325 PrmA: Ribosomal prote 99.4 9.3E-13 2E-17 127.8 13.0 137 359-525 146-282 (295)
88 TIGR00452 methyltransferase, p 99.4 4.3E-12 9.4E-17 124.8 17.6 170 357-548 103-294 (314)
89 PLN02396 hexaprenyldihydroxybe 99.4 2.6E-12 5.6E-17 127.0 15.4 133 375-527 130-290 (322)
90 TIGR02469 CbiT precorrin-6Y C5 99.4 2.1E-12 4.5E-17 110.7 12.8 111 68-186 12-123 (124)
91 KOG1541 Predicted protein carb 99.4 1.9E-12 4.1E-17 115.2 10.6 137 36-187 15-162 (270)
92 PLN03075 nicotianamine synthas 99.4 2.4E-12 5.3E-17 123.8 11.9 107 74-185 122-233 (296)
93 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.2E-12 2.7E-17 119.6 8.6 109 375-505 58-166 (243)
94 PTZ00098 phosphoethanolamine N 99.4 9.9E-12 2.2E-16 120.6 15.2 140 365-526 41-202 (263)
95 PF05175 MTS: Methyltransferas 99.4 3.4E-12 7.3E-17 115.5 10.9 111 69-184 25-139 (170)
96 PF02353 CMAS: Mycolic acid cy 99.4 1.4E-11 3.1E-16 119.2 15.3 114 359-486 45-160 (273)
97 PRK11036 putative S-adenosyl-L 99.4 1.4E-11 3.1E-16 119.4 15.3 133 376-527 44-208 (255)
98 PRK14968 putative methyltransf 99.4 2.2E-11 4.9E-16 112.5 15.8 130 74-240 22-173 (188)
99 PRK15001 SAM-dependent 23S rib 99.4 7.4E-12 1.6E-16 125.8 13.3 112 68-184 221-339 (378)
100 PRK14967 putative methyltransf 99.3 3.3E-11 7.2E-16 114.3 16.8 164 360-548 21-206 (223)
101 PRK00107 gidB 16S rRNA methylt 99.3 2.1E-11 4.5E-16 111.2 14.5 125 376-527 45-170 (187)
102 TIGR03534 RF_mod_PrmC protein- 99.3 2E-11 4.3E-16 118.5 15.4 131 74-240 86-241 (251)
103 PRK11088 rrmA 23S rRNA methylt 99.3 9.9E-12 2.1E-16 121.7 13.2 101 74-191 84-187 (272)
104 PRK00517 prmA ribosomal protei 99.3 2.6E-11 5.6E-16 117.0 15.5 133 74-266 118-250 (250)
105 TIGR00091 tRNA (guanine-N(7)-) 99.3 4.5E-12 9.7E-17 117.4 9.8 112 74-186 15-133 (194)
106 PF12847 Methyltransf_18: Meth 99.3 6.2E-12 1.3E-16 105.7 9.8 106 376-500 1-111 (112)
107 PRK09489 rsmC 16S ribosomal RN 99.3 9.8E-12 2.1E-16 124.4 12.8 112 68-185 189-303 (342)
108 COG2230 Cfa Cyclopropane fatty 99.3 3.1E-11 6.8E-16 114.7 15.3 114 359-486 55-170 (283)
109 TIGR00138 gidB 16S rRNA methyl 99.3 2.2E-11 4.7E-16 110.9 13.8 127 376-527 42-170 (181)
110 PRK00517 prmA ribosomal protei 99.3 4E-11 8.6E-16 115.7 16.3 136 357-525 102-237 (250)
111 PF03141 Methyltransf_29: Puta 99.3 1E-11 2.2E-16 125.0 12.4 357 75-525 117-490 (506)
112 PRK13944 protein-L-isoaspartat 99.3 1E-11 2.3E-16 115.9 11.8 109 65-185 62-173 (205)
113 TIGR03533 L3_gln_methyl protei 99.3 4E-11 8.7E-16 117.5 15.9 127 74-237 120-271 (284)
114 COG4976 Predicted methyltransf 99.3 4.7E-12 1E-16 113.3 8.3 191 23-242 77-267 (287)
115 PLN02233 ubiquinone biosynthes 99.3 6.6E-11 1.4E-15 114.7 17.1 104 374-486 71-176 (261)
116 PRK14967 putative methyltransf 99.3 5.3E-11 1.2E-15 112.9 16.1 107 73-185 34-159 (223)
117 PF00891 Methyltransf_2: O-met 99.3 5E-12 1.1E-16 121.7 9.2 109 69-190 94-204 (241)
118 PRK14121 tRNA (guanine-N(7)-)- 99.3 1.5E-11 3.3E-16 122.8 12.4 119 67-187 114-237 (390)
119 PF03291 Pox_MCEL: mRNA cappin 99.3 1.2E-11 2.7E-16 122.5 11.7 163 75-239 62-266 (331)
120 PRK00377 cbiT cobalt-precorrin 99.3 4.3E-11 9.4E-16 111.3 14.6 131 70-238 35-168 (198)
121 TIGR00406 prmA ribosomal prote 99.3 7E-11 1.5E-15 116.3 16.7 140 358-525 143-282 (288)
122 PF13847 Methyltransf_31: Meth 99.3 1.9E-11 4.2E-16 108.7 11.5 108 376-502 3-112 (152)
123 PLN02232 ubiquinone biosynthes 99.3 1.1E-11 2.4E-16 110.8 9.9 130 103-239 1-146 (160)
124 PRK11207 tellurite resistance 99.3 7.6E-11 1.7E-15 109.4 15.9 99 374-486 28-128 (197)
125 TIGR02752 MenG_heptapren 2-hep 99.3 1.1E-10 2.4E-15 111.6 17.0 102 373-486 42-145 (231)
126 COG2264 PrmA Ribosomal protein 99.3 4.4E-11 9.6E-16 114.7 13.7 137 74-265 161-299 (300)
127 PRK13942 protein-L-isoaspartat 99.3 2.9E-11 6.3E-16 113.4 12.2 110 63-184 64-175 (212)
128 PTZ00146 fibrillarin; Provisio 99.3 1.8E-10 3.8E-15 110.6 17.7 108 71-184 128-236 (293)
129 PRK14968 putative methyltransf 99.3 9E-11 1.9E-15 108.5 15.2 145 356-525 7-172 (188)
130 PRK09328 N5-glutamine S-adenos 99.3 8.3E-11 1.8E-15 115.7 15.9 132 71-238 104-260 (275)
131 PRK11188 rrmJ 23S rRNA methylt 99.3 5.7E-11 1.2E-15 111.0 13.7 105 74-188 50-168 (209)
132 PF08241 Methyltransf_11: Meth 99.3 1.5E-11 3.3E-16 99.7 8.7 91 381-486 1-91 (95)
133 PRK14966 unknown domain/N5-glu 99.3 1.3E-10 2.7E-15 116.9 16.8 131 74-238 250-403 (423)
134 PRK08287 cobalt-precorrin-6Y C 99.3 1.2E-10 2.5E-15 107.5 15.1 129 373-527 28-157 (187)
135 smart00828 PKS_MT Methyltransf 99.3 1E-10 2.3E-15 111.3 14.9 130 378-527 1-145 (224)
136 KOG3010 Methyltransferase [Gen 99.3 1.4E-11 2.9E-16 111.9 8.1 101 78-185 36-137 (261)
137 PRK11873 arsM arsenite S-adeno 99.3 1.1E-10 2.4E-15 114.5 15.0 132 374-525 75-229 (272)
138 COG2242 CobL Precorrin-6B meth 99.3 3.3E-10 7.2E-15 100.2 16.3 135 68-242 27-163 (187)
139 PF06325 PrmA: Ribosomal prote 99.3 5.3E-11 1.2E-15 115.6 12.4 135 74-265 160-294 (295)
140 KOG1270 Methyltransferases [Co 99.3 1.6E-11 3.4E-16 113.0 8.1 112 374-503 87-198 (282)
141 PF06080 DUF938: Protein of un 99.2 8.5E-11 1.8E-15 106.2 12.6 168 61-238 12-190 (204)
142 TIGR00536 hemK_fam HemK family 99.2 1.7E-10 3.7E-15 113.5 15.7 103 77-184 116-243 (284)
143 PRK11805 N5-glutamine S-adenos 99.2 1.4E-10 3.1E-15 114.6 15.3 104 76-184 134-262 (307)
144 PHA03411 putative methyltransf 99.2 1.8E-10 4E-15 109.1 15.1 161 74-267 63-242 (279)
145 TIGR00080 pimt protein-L-isoas 99.2 5.5E-11 1.2E-15 112.1 11.7 108 65-184 67-176 (215)
146 PF13489 Methyltransf_23: Meth 99.2 5.2E-11 1.1E-15 107.0 10.5 119 374-523 20-160 (161)
147 PLN02490 MPBQ/MSBQ methyltrans 99.2 1.6E-10 3.5E-15 114.6 14.7 131 376-529 113-259 (340)
148 COG4123 Predicted O-methyltran 99.2 2.1E-10 4.5E-15 107.2 14.3 145 70-247 39-201 (248)
149 PF08003 Methyltransf_9: Prote 99.2 4.6E-10 1E-14 106.7 16.7 176 358-547 98-287 (315)
150 TIGR00406 prmA ribosomal prote 99.2 1.6E-10 3.5E-15 113.7 14.4 101 74-186 158-260 (288)
151 PRK15128 23S rRNA m(5)C1962 me 99.2 4.2E-10 9.2E-15 114.7 17.4 174 328-530 183-373 (396)
152 PRK00216 ubiE ubiquinone/menaq 99.2 5.2E-10 1.1E-14 107.7 16.6 100 376-486 51-152 (239)
153 COG2263 Predicted RNA methylas 99.2 6.2E-10 1.3E-14 97.9 15.2 125 373-527 42-169 (198)
154 COG2890 HemK Methylase of poly 99.2 3.9E-10 8.5E-15 109.7 15.5 141 359-524 94-261 (280)
155 PF13659 Methyltransf_26: Meth 99.2 8E-11 1.7E-15 99.7 9.1 107 76-185 1-115 (117)
156 PRK00121 trmB tRNA (guanine-N( 99.2 1.4E-10 3E-15 108.0 11.3 128 376-522 40-177 (202)
157 TIGR01177 conserved hypothetic 99.2 1.6E-10 3.5E-15 116.2 12.6 111 70-186 177-295 (329)
158 PRK00377 cbiT cobalt-precorrin 99.2 6.8E-10 1.5E-14 103.3 15.8 137 372-531 36-174 (198)
159 TIGR00477 tehB tellurite resis 99.2 2.7E-10 5.9E-15 105.5 12.6 98 374-486 28-127 (195)
160 TIGR03704 PrmC_rel_meth putati 99.2 9.5E-10 2.1E-14 105.8 16.6 142 360-525 69-239 (251)
161 PRK05134 bifunctional 3-demeth 99.2 8.8E-10 1.9E-14 105.6 16.3 141 365-526 37-205 (233)
162 TIGR00438 rrmJ cell division p 99.2 5.1E-10 1.1E-14 103.3 13.7 105 72-186 29-147 (188)
163 PRK00312 pcm protein-L-isoaspa 99.2 2.7E-10 5.9E-15 107.3 11.7 108 65-186 68-176 (212)
164 KOG1975 mRNA cap methyltransfe 99.2 1.5E-10 3.3E-15 109.1 9.6 124 62-187 105-239 (389)
165 PRK07402 precorrin-6B methylas 99.2 3.3E-10 7.2E-15 105.3 12.1 114 65-187 30-144 (196)
166 PRK08317 hypothetical protein; 99.1 1.2E-09 2.7E-14 105.1 16.3 110 364-486 7-118 (241)
167 PF05148 Methyltransf_8: Hypot 99.1 1.1E-09 2.5E-14 98.2 14.5 130 74-268 71-200 (219)
168 PF05401 NodS: Nodulation prot 99.1 3.5E-10 7.7E-15 100.8 11.1 133 376-532 43-186 (201)
169 COG1092 Predicted SAM-dependen 99.1 8.3E-10 1.8E-14 110.8 15.1 179 327-532 179-373 (393)
170 PRK14966 unknown domain/N5-glu 99.1 2E-09 4.4E-14 108.3 17.8 144 357-525 234-404 (423)
171 PRK10909 rsmD 16S rRNA m(2)G96 99.1 5.6E-10 1.2E-14 102.7 12.6 109 375-503 52-162 (199)
172 TIGR02021 BchM-ChlM magnesium 99.1 1.1E-09 2.3E-14 103.8 14.9 128 374-525 53-205 (219)
173 COG2518 Pcm Protein-L-isoaspar 99.1 4.1E-10 8.8E-15 101.9 11.2 113 60-186 57-170 (209)
174 PRK10258 biotin biosynthesis p 99.1 8.6E-10 1.9E-14 106.9 14.5 110 365-500 31-140 (251)
175 KOG1271 Methyltransferases [Ge 99.1 9.3E-10 2E-14 95.2 12.3 153 351-525 36-204 (227)
176 PF05219 DREV: DREV methyltran 99.1 6.3E-10 1.4E-14 103.4 11.8 146 75-239 94-239 (265)
177 PF07021 MetW: Methionine bios 99.1 7.4E-10 1.6E-14 98.6 11.7 124 376-527 13-168 (193)
178 cd02440 AdoMet_MTases S-adenos 99.1 7.2E-10 1.6E-14 91.1 10.9 102 78-184 1-103 (107)
179 PF01209 Ubie_methyltran: ubiE 99.1 5.8E-10 1.3E-14 105.6 11.4 123 356-504 33-157 (233)
180 PRK10901 16S rRNA methyltransf 99.1 4E-09 8.7E-14 109.8 18.5 117 69-187 238-374 (427)
181 TIGR01983 UbiG ubiquinone bios 99.1 2.5E-09 5.4E-14 101.8 15.5 132 375-526 44-203 (224)
182 TIGR02469 CbiT precorrin-6Y C5 99.1 2.9E-09 6.2E-14 91.0 14.4 112 367-500 10-122 (124)
183 TIGR03704 PrmC_rel_meth putati 99.1 2.6E-09 5.6E-14 102.8 15.5 128 75-237 86-237 (251)
184 PF13659 Methyltransf_26: Meth 99.1 2.4E-10 5.1E-15 96.8 7.4 107 377-500 1-115 (117)
185 PLN02585 magnesium protoporphy 99.1 3.3E-09 7E-14 104.7 16.4 128 376-525 144-298 (315)
186 COG2242 CobL Precorrin-6B meth 99.1 3.6E-09 7.8E-14 93.6 14.8 127 373-524 31-159 (187)
187 COG2226 UbiE Methylase involve 99.1 1.3E-09 2.8E-14 102.0 12.7 99 376-486 51-150 (238)
188 PRK01683 trans-aconitate 2-met 99.1 1.2E-09 2.5E-14 106.4 13.0 104 365-486 20-124 (258)
189 TIGR03534 RF_mod_PrmC protein- 99.1 2E-09 4.4E-14 104.3 14.5 145 357-525 69-240 (251)
190 TIGR03533 L3_gln_methyl protei 99.1 4.5E-09 9.8E-14 103.0 17.0 123 376-522 121-270 (284)
191 PRK04457 spermidine synthase; 99.1 8.7E-10 1.9E-14 106.6 11.5 110 74-186 65-178 (262)
192 PRK11705 cyclopropane fatty ac 99.1 2.9E-09 6.2E-14 108.7 15.8 106 363-486 154-261 (383)
193 TIGR00536 hemK_fam HemK family 99.1 3.7E-09 8.1E-14 104.0 16.0 125 378-524 116-267 (284)
194 PRK01544 bifunctional N5-gluta 99.1 3.3E-09 7.1E-14 112.1 16.2 128 376-525 138-292 (506)
195 PF01135 PCMT: Protein-L-isoas 99.1 5.2E-10 1.1E-14 103.6 9.0 112 62-185 59-172 (209)
196 COG2813 RsmC 16S RNA G1207 met 99.1 1.4E-09 3.1E-14 103.7 12.1 112 68-185 151-266 (300)
197 PF10672 Methyltrans_SAM: S-ad 99.1 1.3E-09 2.9E-14 105.2 12.1 171 327-524 85-262 (286)
198 PRK04266 fibrillarin; Provisio 99.0 7.7E-09 1.7E-13 97.4 16.4 135 372-527 68-211 (226)
199 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 6.8E-09 1.5E-13 98.7 16.3 97 376-486 39-137 (223)
200 PRK12335 tellurite resistance 99.0 1.9E-09 4.2E-14 106.3 12.8 96 376-486 120-217 (287)
201 PRK14901 16S rRNA methyltransf 99.0 7E-09 1.5E-13 108.2 17.7 118 70-187 247-386 (434)
202 COG2890 HemK Methylase of poly 99.0 5.1E-09 1.1E-13 102.0 15.5 122 78-236 113-259 (280)
203 KOG3045 Predicted RNA methylas 99.0 4.7E-09 1E-13 96.0 13.8 114 74-241 179-292 (325)
204 TIGR00095 RNA methyltransferas 99.0 3.4E-09 7.3E-14 97.2 13.1 104 374-486 47-153 (189)
205 PRK09328 N5-glutamine S-adenos 99.0 9.2E-09 2E-13 101.2 17.1 144 358-524 90-260 (275)
206 PF08242 Methyltransf_12: Meth 99.0 5.1E-11 1.1E-15 97.6 0.6 96 381-486 1-97 (99)
207 KOG2899 Predicted methyltransf 99.0 9.1E-10 2E-14 99.8 8.6 154 74-237 57-254 (288)
208 TIGR01177 conserved hypothetic 99.0 3.2E-09 6.9E-14 106.8 13.6 137 363-526 169-315 (329)
209 PRK14103 trans-aconitate 2-met 99.0 1.9E-09 4E-14 104.7 11.5 94 373-486 26-120 (255)
210 TIGR00563 rsmB ribosomal RNA s 99.0 6.5E-09 1.4E-13 108.3 16.3 118 69-188 232-371 (426)
211 PRK10611 chemotaxis methyltran 99.0 1.6E-09 3.4E-14 105.0 10.6 129 52-184 92-261 (287)
212 TIGR00740 methyltransferase, p 99.0 5.2E-09 1.1E-13 100.5 14.3 107 376-503 53-164 (239)
213 COG2519 GCD14 tRNA(1-methylade 99.0 4E-09 8.8E-14 97.6 12.7 108 69-188 88-198 (256)
214 PRK00811 spermidine synthase; 99.0 1.7E-09 3.6E-14 106.0 10.6 108 74-184 75-190 (283)
215 PRK07402 precorrin-6B methylas 99.0 9.7E-09 2.1E-13 95.4 15.1 129 373-525 37-169 (196)
216 PRK15451 tRNA cmo(5)U34 methyl 99.0 3.2E-09 6.9E-14 102.4 12.1 107 376-503 56-167 (247)
217 PF01739 CheR: CheR methyltran 99.0 1.6E-09 3.6E-14 99.1 9.6 107 74-184 30-174 (196)
218 PRK11805 N5-glutamine S-adenos 99.0 2E-08 4.4E-13 99.4 17.8 121 378-521 135-281 (307)
219 PRK13943 protein-L-isoaspartat 99.0 2.4E-09 5.3E-14 105.8 11.1 109 65-185 70-180 (322)
220 PRK13944 protein-L-isoaspartat 99.0 7.3E-09 1.6E-13 96.8 13.8 112 365-501 61-174 (205)
221 KOG3178 Hydroxyindole-O-methyl 99.0 2.2E-09 4.8E-14 103.9 10.4 150 76-240 178-330 (342)
222 PF08704 GCD14: tRNA methyltra 99.0 3.9E-09 8.5E-14 99.8 11.6 133 68-238 33-169 (247)
223 PRK07580 Mg-protoporphyrin IX 99.0 7.5E-09 1.6E-13 99.0 13.7 128 375-527 62-215 (230)
224 TIGR00080 pimt protein-L-isoas 99.0 7.6E-09 1.6E-13 97.6 13.4 111 364-500 65-177 (215)
225 PF13649 Methyltransf_25: Meth 99.0 6.3E-10 1.4E-14 91.4 5.3 94 380-486 1-101 (101)
226 PRK13168 rumA 23S rRNA m(5)U19 99.0 7.1E-09 1.5E-13 108.6 14.4 144 361-527 282-425 (443)
227 PF12147 Methyltransf_20: Puta 99.0 1.7E-08 3.7E-13 94.9 15.1 159 73-240 133-298 (311)
228 COG4976 Predicted methyltransf 99.0 4E-10 8.7E-15 101.1 4.1 127 377-528 126-267 (287)
229 TIGR02072 BioC biotin biosynth 99.0 4.5E-09 9.7E-14 101.1 11.6 102 375-500 33-135 (240)
230 TIGR02081 metW methionine bios 99.0 1.4E-08 3E-13 94.2 14.4 143 376-548 13-187 (194)
231 PRK13942 protein-L-isoaspartat 99.0 9.6E-09 2.1E-13 96.4 13.2 114 361-500 61-176 (212)
232 PRK06202 hypothetical protein; 99.0 1.1E-08 2.3E-13 97.9 13.6 93 375-481 59-158 (232)
233 KOG3191 Predicted N6-DNA-methy 99.0 7.2E-09 1.6E-13 89.9 10.9 144 360-527 24-194 (209)
234 smart00650 rADc Ribosomal RNA 98.9 4.8E-09 1E-13 94.9 10.3 107 68-184 6-112 (169)
235 PRK01581 speE spermidine synth 98.9 3.1E-08 6.7E-13 97.7 16.6 108 74-184 149-267 (374)
236 PF03602 Cons_hypoth95: Conser 98.9 2.5E-09 5.3E-14 97.2 8.3 111 375-503 41-156 (183)
237 TIGR02716 C20_methyl_CrtF C-20 98.9 2.6E-08 5.7E-13 99.4 16.4 115 365-501 138-255 (306)
238 PLN02672 methionine S-methyltr 98.9 1.4E-08 3E-13 113.9 15.6 154 358-528 99-305 (1082)
239 PRK14904 16S rRNA methyltransf 98.9 2.4E-08 5.1E-13 104.6 15.7 114 70-188 245-380 (445)
240 PRK14902 16S rRNA methyltransf 98.9 2.4E-08 5.1E-13 104.8 15.4 116 69-187 244-381 (444)
241 PTZ00146 fibrillarin; Provisio 98.9 5.3E-08 1.2E-12 93.6 16.4 152 355-527 107-272 (293)
242 PRK11188 rrmJ 23S rRNA methylt 98.9 4.5E-08 9.8E-13 91.5 15.6 126 374-525 49-188 (209)
243 PF02390 Methyltransf_4: Putat 98.9 5.4E-09 1.2E-13 96.2 9.2 110 75-185 17-133 (195)
244 PF03848 TehB: Tellurite resis 98.9 9.1E-09 2E-13 93.2 10.2 99 373-486 27-127 (192)
245 PRK05785 hypothetical protein; 98.9 9.8E-09 2.1E-13 97.2 10.9 89 376-484 51-139 (226)
246 KOG4300 Predicted methyltransf 98.9 1.5E-08 3.1E-13 89.9 11.0 110 378-505 78-187 (252)
247 PRK13168 rumA 23S rRNA m(5)U19 98.9 1.6E-08 3.4E-13 106.0 13.3 111 67-185 289-400 (443)
248 PLN02781 Probable caffeoyl-CoA 98.9 9.6E-09 2.1E-13 97.7 10.6 110 71-185 64-178 (234)
249 TIGR00091 tRNA (guanine-N(7)-) 98.9 1.2E-08 2.7E-13 94.4 10.9 129 376-523 16-155 (194)
250 TIGR00446 nop2p NOL1/NOP2/sun 98.9 2.3E-08 5.1E-13 97.1 13.0 115 70-188 66-202 (264)
251 PRK14903 16S rRNA methyltransf 98.9 2.2E-08 4.8E-13 104.0 13.3 117 69-188 231-369 (431)
252 COG0220 Predicted S-adenosylme 98.9 1.2E-08 2.7E-13 95.2 10.0 121 66-187 39-166 (227)
253 PLN02366 spermidine synthase 98.9 1.5E-08 3.4E-13 99.6 11.1 109 74-184 90-205 (308)
254 PHA03411 putative methyltransf 98.9 3.2E-08 6.9E-13 94.0 12.5 126 376-527 64-215 (279)
255 KOG2940 Predicted methyltransf 98.9 3.1E-09 6.7E-14 95.3 5.3 155 74-241 71-228 (325)
256 TIGR00438 rrmJ cell division p 98.8 5.5E-08 1.2E-12 89.7 13.7 137 363-525 19-169 (188)
257 PLN02672 methionine S-methyltr 98.8 3.2E-08 6.9E-13 111.1 14.3 133 76-242 119-305 (1082)
258 COG2263 Predicted RNA methylas 98.8 1.7E-07 3.6E-12 82.7 15.4 131 74-247 44-175 (198)
259 TIGR03587 Pse_Me-ase pseudamin 98.8 3.3E-08 7.2E-13 91.9 11.4 90 375-481 42-134 (204)
260 KOG1499 Protein arginine N-met 98.8 1.3E-08 2.8E-13 98.4 8.8 109 367-487 51-162 (346)
261 TIGR00417 speE spermidine synt 98.8 2E-08 4.3E-13 98.0 10.2 108 74-184 71-185 (270)
262 PRK00312 pcm protein-L-isoaspa 98.8 8.8E-08 1.9E-12 90.2 14.2 113 362-501 64-176 (212)
263 PLN03075 nicotianamine synthas 98.8 6.2E-08 1.3E-12 93.6 13.2 130 376-525 123-259 (296)
264 PRK11727 23S rRNA mA1618 methy 98.8 1.3E-07 2.9E-12 93.1 15.7 145 376-527 114-293 (321)
265 cd02440 AdoMet_MTases S-adenos 98.8 5.5E-08 1.2E-12 79.7 11.1 102 379-499 1-103 (107)
266 PRK03612 spermidine synthase; 98.8 7.7E-08 1.7E-12 102.4 14.6 108 74-185 296-415 (521)
267 PRK06922 hypothetical protein; 98.8 3.1E-08 6.8E-13 104.4 11.1 108 374-500 416-537 (677)
268 PHA03412 putative methyltransf 98.8 1.3E-07 2.9E-12 87.8 13.9 98 74-180 48-158 (241)
269 KOG2904 Predicted methyltransf 98.8 1.2E-07 2.6E-12 87.9 13.5 132 356-506 126-291 (328)
270 COG4122 Predicted O-methyltran 98.8 4.7E-08 1E-12 90.1 10.8 112 68-186 52-167 (219)
271 COG0742 N6-adenine-specific me 98.8 3.2E-08 6.9E-13 88.3 9.0 103 374-486 41-148 (187)
272 COG1352 CheR Methylase of chem 98.8 6.3E-08 1.4E-12 92.6 11.4 106 75-184 96-240 (268)
273 TIGR00478 tly hemolysin TlyA f 98.8 8E-08 1.7E-12 90.1 11.6 142 356-526 55-217 (228)
274 KOG1500 Protein arginine N-met 98.7 7.6E-08 1.7E-12 91.2 11.1 157 367-554 168-331 (517)
275 TIGR02085 meth_trns_rumB 23S r 98.7 8.4E-08 1.8E-12 98.0 12.4 123 376-525 233-355 (374)
276 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.7 9E-08 1.9E-12 90.8 11.5 149 74-239 55-238 (256)
277 COG3963 Phospholipid N-methylt 98.7 1.3E-07 2.8E-12 81.1 11.2 127 57-187 30-158 (194)
278 smart00138 MeTrc Methyltransfe 98.7 2.8E-08 6E-13 96.4 8.3 111 376-502 99-244 (264)
279 PRK15128 23S rRNA m(5)C1962 me 98.7 7.1E-08 1.5E-12 98.5 11.3 111 74-185 219-339 (396)
280 PRK11783 rlmL 23S rRNA m(2)G24 98.7 5.6E-08 1.2E-12 107.2 11.1 135 74-243 537-683 (702)
281 PRK03522 rumB 23S rRNA methylu 98.7 1.7E-07 3.7E-12 93.6 13.4 123 376-525 173-295 (315)
282 KOG1540 Ubiquinone biosynthesi 98.7 4.8E-07 1E-11 83.2 14.6 134 373-524 97-237 (296)
283 PF01596 Methyltransf_3: O-met 98.7 5.4E-08 1.2E-12 90.0 8.6 107 74-185 44-155 (205)
284 PRK04457 spermidine synthase; 98.7 6.1E-07 1.3E-11 86.9 16.3 122 376-517 66-194 (262)
285 PLN02476 O-methyltransferase 98.7 1.7E-07 3.6E-12 90.2 12.0 110 71-185 114-228 (278)
286 PRK13943 protein-L-isoaspartat 98.7 2.5E-07 5.5E-12 91.6 13.5 105 364-486 68-174 (322)
287 PF11968 DUF3321: Putative met 98.7 4.1E-07 8.9E-12 82.5 13.2 125 76-241 52-182 (219)
288 KOG2920 Predicted methyltransf 98.7 7.2E-09 1.6E-13 97.5 2.0 134 352-503 89-237 (282)
289 KOG1331 Predicted methyltransf 98.7 5.1E-08 1.1E-12 91.4 7.5 137 40-189 9-147 (293)
290 KOG3010 Methyltransferase [Gen 98.7 4.1E-08 8.9E-13 89.5 6.6 96 379-486 36-131 (261)
291 PLN02781 Probable caffeoyl-CoA 98.7 1.3E-07 2.8E-12 90.0 10.1 104 374-486 66-172 (234)
292 PF10294 Methyltransf_16: Puta 98.7 5.6E-08 1.2E-12 88.0 7.2 110 74-186 44-157 (173)
293 TIGR00479 rumA 23S rRNA (uraci 98.7 1.4E-07 3E-12 98.8 11.2 110 68-184 285-395 (431)
294 COG2521 Predicted archaeal met 98.6 1.1E-07 2.4E-12 86.0 8.6 141 71-238 130-275 (287)
295 TIGR00479 rumA 23S rRNA (uraci 98.6 7E-07 1.5E-11 93.5 16.2 145 360-526 276-420 (431)
296 PRK10901 16S rRNA methyltransf 98.6 3.5E-07 7.5E-12 95.4 13.8 130 375-523 243-398 (427)
297 PRK03522 rumB 23S rRNA methylu 98.6 1E-07 2.3E-12 95.2 9.5 102 74-185 172-274 (315)
298 KOG1541 Predicted protein carb 98.6 4.2E-07 9E-12 81.6 12.1 120 376-520 50-181 (270)
299 PRK14904 16S rRNA methyltransf 98.6 5.3E-07 1.2E-11 94.5 15.0 114 356-486 233-371 (445)
300 PRK14902 16S rRNA methyltransf 98.6 4.1E-07 8.8E-12 95.5 14.1 141 361-525 239-407 (444)
301 TIGR00446 nop2p NOL1/NOP2/sun 98.6 3.8E-07 8.2E-12 88.7 12.9 100 375-486 70-193 (264)
302 KOG3191 Predicted N6-DNA-methy 98.6 6.1E-07 1.3E-11 78.1 12.5 132 74-240 42-193 (209)
303 PRK11088 rrmA 23S rRNA methylt 98.6 2.8E-07 6.1E-12 90.2 11.9 105 364-501 74-182 (272)
304 TIGR03439 methyl_EasF probable 98.6 3.1E-06 6.8E-11 83.5 18.9 155 24-184 25-196 (319)
305 smart00650 rADc Ribosomal RNA 98.6 2.3E-07 4.9E-12 84.0 9.8 86 367-467 4-89 (169)
306 COG2519 GCD14 tRNA(1-methylade 98.6 7.7E-07 1.7E-11 82.6 13.2 140 365-530 83-224 (256)
307 KOG2352 Predicted spermine/spe 98.6 1.3E-06 2.8E-11 88.4 15.7 107 75-186 47-162 (482)
308 TIGR03840 TMPT_Se_Te thiopurin 98.6 1.8E-06 3.8E-11 80.8 15.6 150 361-530 20-191 (213)
309 PF07942 N2227: N2227-like pro 98.6 1.7E-06 3.7E-11 82.5 15.5 159 62-240 39-242 (270)
310 PRK00811 spermidine synthase; 98.6 6.3E-07 1.4E-11 87.9 12.9 139 376-531 76-224 (283)
311 PHA03412 putative methyltransf 98.6 3.7E-07 8.1E-12 84.8 10.3 92 376-485 49-156 (241)
312 PRK14901 16S rRNA methyltransf 98.6 6.6E-07 1.4E-11 93.5 13.5 132 375-522 251-409 (434)
313 PRK14903 16S rRNA methyltransf 98.6 1.1E-06 2.3E-11 91.5 14.9 100 375-486 236-360 (431)
314 TIGR00563 rsmB ribosomal RNA s 98.6 8E-07 1.7E-11 92.7 14.0 114 360-486 226-362 (426)
315 PRK14121 tRNA (guanine-N(7)-)- 98.6 6E-07 1.3E-11 90.1 12.4 109 376-502 122-237 (390)
316 PRK05031 tRNA (uracil-5-)-meth 98.6 1E-06 2.2E-11 89.5 14.1 142 361-527 192-344 (362)
317 TIGR00417 speE spermidine synt 98.5 1.8E-06 3.9E-11 84.3 14.9 140 376-532 72-220 (270)
318 PF05219 DREV: DREV methyltran 98.5 1.1E-06 2.4E-11 82.1 12.6 122 376-527 94-241 (265)
319 PLN02589 caffeoyl-CoA O-methyl 98.5 7E-07 1.5E-11 84.9 11.5 109 70-184 74-189 (247)
320 COG2518 Pcm Protein-L-isoaspar 98.5 1.2E-06 2.6E-11 79.6 12.2 112 355-486 51-163 (209)
321 PRK01581 speE spermidine synth 98.5 1.3E-06 2.9E-11 86.4 13.3 135 376-527 150-298 (374)
322 PRK10909 rsmD 16S rRNA m(2)G96 98.5 8.8E-07 1.9E-11 81.6 11.4 106 74-186 52-160 (199)
323 COG1041 Predicted DNA modifica 98.5 1.4E-06 3.1E-11 85.0 12.9 138 362-527 183-331 (347)
324 PRK11727 23S rRNA mA1618 methy 98.5 1.7E-06 3.6E-11 85.4 13.6 154 75-240 114-292 (321)
325 COG4106 Tam Trans-aconitate me 98.5 5E-07 1.1E-11 81.0 8.8 95 371-486 25-123 (257)
326 PLN02366 spermidine synthase 98.5 2.8E-06 6.1E-11 83.8 15.1 140 376-530 91-239 (308)
327 PRK04148 hypothetical protein; 98.5 1.6E-06 3.4E-11 73.4 11.2 103 68-188 9-112 (134)
328 PRK04148 hypothetical protein; 98.5 9.6E-07 2.1E-11 74.7 9.7 97 363-484 3-100 (134)
329 PRK03612 spermidine synthase; 98.5 2.1E-06 4.5E-11 91.6 14.5 132 376-523 297-441 (521)
330 KOG2904 Predicted methyltransf 98.5 1.3E-06 2.9E-11 81.1 10.6 113 74-186 147-286 (328)
331 COG4122 Predicted O-methyltran 98.5 2.1E-06 4.4E-11 79.4 11.8 101 374-486 57-160 (219)
332 KOG3420 Predicted RNA methylas 98.5 4E-07 8.6E-12 76.0 6.3 81 371-463 43-123 (185)
333 PRK14896 ksgA 16S ribosomal RN 98.4 8.7E-07 1.9E-11 85.9 9.7 85 64-157 18-102 (258)
334 TIGR03438 probable methyltrans 98.4 1.2E-06 2.5E-11 87.0 10.8 112 376-502 63-179 (301)
335 KOG1661 Protein-L-isoaspartate 98.4 8.5E-07 1.8E-11 79.2 8.4 109 64-184 69-192 (237)
336 PLN02823 spermine synthase 98.4 1.1E-06 2.3E-11 87.6 10.2 107 74-184 102-219 (336)
337 PRK00274 ksgA 16S ribosomal RN 98.4 7E-07 1.5E-11 87.2 8.8 85 63-155 30-114 (272)
338 PF01170 UPF0020: Putative RNA 98.4 2.4E-06 5.2E-11 77.7 11.5 138 364-527 16-172 (179)
339 PF08704 GCD14: tRNA methyltra 98.4 2.6E-06 5.6E-11 80.8 11.7 141 366-527 30-172 (247)
340 TIGR00308 TRM1 tRNA(guanine-26 98.4 2.6E-06 5.5E-11 86.2 12.1 102 377-501 45-148 (374)
341 PLN02476 O-methyltransferase 98.4 2.6E-06 5.6E-11 82.1 11.3 101 374-486 116-222 (278)
342 KOG1499 Protein arginine N-met 98.4 7.5E-07 1.6E-11 86.4 7.6 104 74-183 59-165 (346)
343 PF01135 PCMT: Protein-L-isoas 98.4 8.8E-07 1.9E-11 82.2 7.8 112 364-501 60-173 (209)
344 PTZ00338 dimethyladenosine tra 98.4 1.7E-06 3.7E-11 84.8 9.8 88 64-159 25-114 (294)
345 PRK13255 thiopurine S-methyltr 98.4 4.9E-06 1.1E-10 78.1 12.4 113 362-486 24-149 (218)
346 PRK04338 N(2),N(2)-dimethylgua 98.4 2.1E-06 4.6E-11 87.4 10.6 101 377-502 58-160 (382)
347 TIGR00755 ksgA dimethyladenosi 98.4 4.5E-06 9.7E-11 80.8 12.3 71 63-136 17-87 (253)
348 PF01596 Methyltransf_3: O-met 98.3 1.2E-06 2.7E-11 80.9 7.6 103 375-486 44-149 (205)
349 PF05185 PRMT5: PRMT5 arginine 98.3 2.2E-06 4.8E-11 88.8 10.2 102 76-182 187-294 (448)
350 TIGR02085 meth_trns_rumB 23S r 98.3 1.8E-06 3.9E-11 88.2 9.4 102 74-185 232-334 (374)
351 TIGR02143 trmA_only tRNA (urac 98.3 4.8E-06 1E-10 84.3 11.7 140 361-525 183-333 (353)
352 PF02527 GidB: rRNA small subu 98.3 8.9E-06 1.9E-10 73.8 12.2 96 78-184 51-147 (184)
353 KOG1500 Protein arginine N-met 98.3 6.2E-06 1.4E-10 78.5 11.4 102 74-183 176-280 (517)
354 COG1041 Predicted DNA modifica 98.3 6.9E-06 1.5E-10 80.3 12.0 117 63-185 185-310 (347)
355 PRK00274 ksgA 16S ribosomal RN 98.3 2.5E-06 5.5E-11 83.3 8.8 88 365-468 31-118 (272)
356 KOG3420 Predicted RNA methylas 98.3 1.4E-06 3.1E-11 72.7 5.4 80 73-157 46-125 (185)
357 PTZ00338 dimethyladenosine tra 98.3 4.1E-06 8.8E-11 82.2 9.4 90 365-468 25-114 (294)
358 PRK14896 ksgA 16S ribosomal RN 98.3 4.7E-06 1E-10 80.8 9.8 87 364-467 17-103 (258)
359 PF09243 Rsm22: Mitochondrial 98.2 1E-05 2.2E-10 78.9 11.9 140 65-236 23-164 (274)
360 COG1092 Predicted SAM-dependen 98.2 1.4E-05 3E-10 80.7 13.1 109 75-185 217-336 (393)
361 TIGR00478 tly hemolysin TlyA f 98.2 7.4E-06 1.6E-10 76.9 10.5 93 74-184 74-170 (228)
362 PF02475 Met_10: Met-10+ like- 98.2 2.6E-06 5.7E-11 78.2 7.2 97 374-486 99-196 (200)
363 KOG3987 Uncharacterized conser 98.2 7.5E-07 1.6E-11 78.9 3.4 104 65-184 96-206 (288)
364 PRK00050 16S rRNA m(4)C1402 me 98.2 3.5E-06 7.6E-11 82.0 8.2 93 62-155 6-99 (296)
365 PF06080 DUF938: Protein of un 98.2 1.3E-05 2.8E-10 72.9 11.2 104 379-486 28-135 (204)
366 COG2265 TrmA SAM-dependent met 98.2 1.4E-05 3E-10 82.4 12.7 142 361-525 278-419 (432)
367 PF05185 PRMT5: PRMT5 arginine 98.2 7.6E-06 1.6E-10 84.9 10.4 111 364-486 174-291 (448)
368 COG2520 Predicted methyltransf 98.2 3.4E-05 7.4E-10 76.1 14.1 96 376-486 188-283 (341)
369 PF04672 Methyltransf_19: S-ad 98.2 1.5E-05 3.3E-10 75.5 11.0 159 75-242 68-238 (267)
370 COG0421 SpeE Spermidine syntha 98.2 9.5E-06 2.1E-10 78.5 9.7 106 75-184 76-189 (282)
371 PF00891 Methyltransf_2: O-met 98.2 8.5E-06 1.8E-10 78.4 9.3 107 366-502 90-201 (241)
372 PF03291 Pox_MCEL: mRNA cappin 98.2 8E-06 1.7E-10 81.3 9.0 138 356-503 42-189 (331)
373 KOG0820 Ribosomal RNA adenine 98.1 9E-06 1.9E-10 75.7 8.5 90 62-159 45-136 (315)
374 KOG2899 Predicted methyltransf 98.1 1.5E-05 3.2E-10 72.9 9.5 113 373-486 55-203 (288)
375 PF01564 Spermine_synth: Sperm 98.1 5.7E-05 1.2E-09 72.3 14.3 110 74-185 75-191 (246)
376 TIGR00095 RNA methyltransferas 98.1 1.3E-05 2.9E-10 73.5 9.4 107 74-185 48-159 (189)
377 KOG2361 Predicted methyltransf 98.1 9E-06 1.9E-10 74.5 7.7 99 379-486 74-177 (264)
378 PF09445 Methyltransf_15: RNA 98.1 3.6E-05 7.8E-10 67.8 11.2 126 378-525 1-148 (163)
379 KOG2915 tRNA(1-methyladenosine 98.1 4.5E-05 9.7E-10 71.1 12.1 107 68-183 98-207 (314)
380 KOG2497 Predicted methyltransf 98.1 2E-06 4.3E-11 81.6 3.0 132 348-484 62-193 (262)
381 PF01861 DUF43: Protein of unk 98.1 0.00014 3E-09 67.5 14.7 154 351-525 20-177 (243)
382 PF05891 Methyltransf_PK: AdoM 98.1 2.8E-05 6E-10 71.1 9.9 130 376-525 55-200 (218)
383 COG0500 SmtA SAM-dependent met 98.0 0.00019 4.1E-09 64.3 15.3 106 79-190 52-160 (257)
384 PLN02589 caffeoyl-CoA O-methyl 98.0 3.1E-05 6.7E-10 73.7 10.1 99 375-486 78-184 (247)
385 COG0357 GidB Predicted S-adeno 98.0 0.00011 2.4E-09 67.9 13.1 133 76-247 68-202 (215)
386 TIGR00755 ksgA dimethyladenosi 98.0 9.1E-05 2E-09 71.7 13.3 68 365-439 18-85 (253)
387 PF02475 Met_10: Met-10+ like- 98.0 2.3E-05 4.9E-10 72.0 8.3 98 74-182 100-199 (200)
388 PRK00536 speE spermidine synth 98.0 4.1E-05 8.9E-10 73.2 10.3 97 72-184 69-170 (262)
389 COG0030 KsgA Dimethyladenosine 98.0 3.1E-05 6.6E-10 73.4 9.2 86 64-155 19-104 (259)
390 KOG1269 SAM-dependent methyltr 98.0 7.5E-06 1.6E-10 82.0 5.3 107 74-187 109-217 (364)
391 PLN02823 spermine synthase 98.0 0.00013 2.8E-09 72.8 13.5 138 376-531 103-255 (336)
392 PRK04338 N(2),N(2)-dimethylgua 98.0 2.3E-05 5.1E-10 79.8 8.4 100 75-184 57-157 (382)
393 PRK11933 yebU rRNA (cytosine-C 98.0 7.2E-05 1.6E-09 78.0 12.1 115 72-189 110-246 (470)
394 PF01728 FtsJ: FtsJ-like methy 98.0 5.6E-06 1.2E-10 75.8 3.5 103 75-187 23-141 (181)
395 PF01170 UPF0020: Putative RNA 97.9 6.7E-05 1.5E-09 68.3 9.9 116 64-183 17-149 (179)
396 PF05148 Methyltransf_8: Hypot 97.9 0.00011 2.3E-09 66.6 10.7 130 355-525 52-184 (219)
397 PRK13256 thiopurine S-methyltr 97.9 0.00045 9.8E-09 64.7 15.3 116 361-486 29-157 (226)
398 PF10672 Methyltrans_SAM: S-ad 97.9 4.7E-05 1E-09 73.9 9.1 110 74-185 122-238 (286)
399 PF05971 Methyltransf_10: Prot 97.9 5.2E-05 1.1E-09 73.5 9.1 88 376-468 102-191 (299)
400 COG0293 FtsJ 23S rRNA methylas 97.9 0.00016 3.5E-09 65.8 11.6 106 74-189 44-163 (205)
401 PRK00536 speE spermidine synth 97.9 0.00022 4.7E-09 68.3 13.1 131 376-532 72-205 (262)
402 PF04816 DUF633: Family of unk 97.9 0.00019 4.2E-09 66.3 12.3 123 79-242 1-126 (205)
403 PF01269 Fibrillarin: Fibrilla 97.9 0.00024 5.2E-09 65.0 12.2 105 71-185 69-178 (229)
404 COG3963 Phospholipid N-methylt 97.8 0.00022 4.8E-09 61.6 10.9 127 356-501 28-158 (194)
405 COG2521 Predicted archaeal met 97.8 0.00016 3.5E-09 65.9 10.7 156 352-525 114-276 (287)
406 COG4627 Uncharacterized protei 97.8 1E-05 2.2E-10 68.6 2.7 94 141-237 42-135 (185)
407 COG4798 Predicted methyltransf 97.8 0.00012 2.6E-09 64.7 9.4 145 69-237 42-202 (238)
408 PF05724 TPMT: Thiopurine S-me 97.8 3.3E-05 7.1E-10 72.4 6.4 149 361-526 23-190 (218)
409 PF01728 FtsJ: FtsJ-like methy 97.8 2.8E-05 6E-10 71.2 5.4 142 359-527 4-164 (181)
410 KOG1663 O-methyltransferase [S 97.8 0.00015 3.2E-09 66.4 9.1 107 74-185 72-183 (237)
411 KOG2187 tRNA uracil-5-methyltr 97.8 0.00013 2.7E-09 74.4 9.6 137 360-514 367-503 (534)
412 PF02390 Methyltransf_4: Putat 97.8 0.00033 7.2E-09 64.6 11.6 127 379-523 20-157 (195)
413 PF05958 tRNA_U5-meth_tr: tRNA 97.8 0.00018 4E-09 72.9 10.7 145 358-525 179-332 (352)
414 PRK05031 tRNA (uracil-5-)-meth 97.7 0.00011 2.3E-09 74.9 8.4 101 76-185 207-320 (362)
415 KOG2798 Putative trehalase [Ca 97.7 0.0012 2.7E-08 62.9 14.7 158 63-239 134-336 (369)
416 KOG3987 Uncharacterized conser 97.7 1.3E-05 2.8E-10 71.3 1.4 120 376-525 112-259 (288)
417 PF02384 N6_Mtase: N-6 DNA Met 97.7 0.0002 4.3E-09 71.7 10.2 126 59-186 30-184 (311)
418 PF03059 NAS: Nicotianamine sy 97.7 0.00035 7.6E-09 67.2 11.1 104 76-184 121-229 (276)
419 COG2265 TrmA SAM-dependent met 97.7 0.00025 5.3E-09 73.2 10.8 109 68-185 286-396 (432)
420 PF08123 DOT1: Histone methyla 97.7 9E-05 2E-09 68.5 6.8 112 68-183 35-156 (205)
421 PRK13699 putative methylase; P 97.7 0.0044 9.4E-08 58.6 18.3 56 364-421 152-207 (227)
422 PF03602 Cons_hypoth95: Conser 97.7 7.1E-05 1.5E-09 68.1 5.9 110 74-187 41-155 (183)
423 COG4076 Predicted RNA methylas 97.7 4.9E-05 1.1E-09 66.6 4.6 101 75-183 32-133 (252)
424 KOG3201 Uncharacterized conser 97.7 3.9E-05 8.4E-10 65.6 3.8 132 74-238 28-164 (201)
425 COG4076 Predicted RNA methylas 97.7 7.2E-05 1.6E-09 65.6 5.5 95 377-486 33-129 (252)
426 KOG1709 Guanidinoacetate methy 97.7 0.00034 7.3E-09 63.0 9.6 106 74-184 100-205 (271)
427 PF09445 Methyltransf_15: RNA 97.6 7.2E-05 1.6E-09 65.9 4.6 71 78-152 2-75 (163)
428 KOG3045 Predicted RNA methylas 97.6 0.00075 1.6E-08 62.6 10.9 127 356-525 161-290 (325)
429 KOG2940 Predicted methyltransf 97.6 0.00011 2.3E-09 66.7 5.3 97 376-486 72-168 (325)
430 PF01739 CheR: CheR methyltran 97.6 7.3E-05 1.6E-09 68.7 4.4 112 376-503 31-178 (196)
431 PRK10611 chemotaxis methyltran 97.5 0.00013 2.8E-09 71.0 5.8 111 377-503 116-265 (287)
432 PHA01634 hypothetical protein 97.5 0.00042 9.2E-09 56.8 7.7 52 374-425 26-77 (156)
433 PF02527 GidB: rRNA small subu 97.5 0.0007 1.5E-08 61.5 10.1 120 379-525 51-174 (184)
434 COG3897 Predicted methyltransf 97.5 0.00045 9.7E-09 61.5 8.3 104 74-188 78-182 (218)
435 PF00398 RrnaAD: Ribosomal RNA 97.5 0.00077 1.7E-08 65.5 10.9 107 62-177 17-123 (262)
436 COG0742 N6-adenine-specific me 97.5 0.001 2.2E-08 59.7 10.7 122 62-186 28-155 (187)
437 KOG1975 mRNA cap methyltransfe 97.5 0.00095 2.1E-08 64.0 10.9 132 356-503 103-240 (389)
438 COG1352 CheR Methylase of chem 97.5 0.00046 9.9E-09 66.3 8.9 113 376-504 96-245 (268)
439 PRK11933 yebU rRNA (cytosine-C 97.5 0.00099 2.1E-08 69.6 12.1 113 360-486 99-236 (470)
440 COG2520 Predicted methyltransf 97.5 0.0014 3E-08 64.9 12.4 129 74-237 187-317 (341)
441 COG1189 Predicted rRNA methyla 97.5 0.0032 6.8E-08 58.3 13.8 145 357-527 60-225 (245)
442 COG0293 FtsJ 23S rRNA methylas 97.5 0.0013 2.9E-08 59.9 11.0 147 359-532 28-189 (205)
443 COG0144 Sun tRNA and rRNA cyto 97.5 0.0016 3.5E-08 65.9 12.8 115 69-185 150-288 (355)
444 TIGR01444 fkbM_fam methyltrans 97.4 0.00052 1.1E-08 60.0 7.9 58 379-440 1-59 (143)
445 PF01564 Spermine_synth: Sperm 97.4 0.0015 3.4E-08 62.5 11.8 140 376-531 76-224 (246)
446 PF08123 DOT1: Histone methyla 97.4 0.00044 9.5E-09 64.0 7.3 116 350-473 20-141 (205)
447 PLN02232 ubiquinone biosynthes 97.4 0.00063 1.4E-08 60.8 8.2 75 403-486 1-75 (160)
448 TIGR02987 met_A_Alw26 type II 97.4 0.00075 1.6E-08 72.6 10.3 80 75-154 31-120 (524)
449 PF13679 Methyltransf_32: Meth 97.4 0.00051 1.1E-08 59.9 7.3 82 74-160 24-113 (141)
450 KOG1661 Protein-L-isoaspartate 97.4 0.00069 1.5E-08 61.0 7.9 99 374-486 80-187 (237)
451 PLN02668 indole-3-acetate carb 97.4 0.0035 7.6E-08 63.3 13.8 167 75-242 63-311 (386)
452 TIGR00006 S-adenosyl-methyltra 97.4 0.00052 1.1E-08 67.1 7.7 94 61-154 6-100 (305)
453 PF12147 Methyltransf_20: Puta 97.3 0.0038 8.1E-08 59.6 12.7 103 376-486 135-243 (311)
454 PRK00050 16S rRNA m(4)C1402 me 97.3 0.0006 1.3E-08 66.6 7.8 60 373-438 16-77 (296)
455 TIGR01444 fkbM_fam methyltrans 97.3 0.00045 9.7E-09 60.4 6.3 57 78-134 1-58 (143)
456 COG0116 Predicted N6-adenine-s 97.3 0.0062 1.3E-07 60.9 14.6 108 363-481 178-334 (381)
457 KOG1501 Arginine N-methyltrans 97.3 0.0007 1.5E-08 67.2 7.8 98 379-486 69-169 (636)
458 KOG4589 Cell division protein 97.3 0.0012 2.5E-08 58.2 8.3 106 74-189 68-188 (232)
459 PRK11760 putative 23S rRNA C24 97.3 0.0013 2.8E-08 64.6 9.5 87 74-178 210-296 (357)
460 TIGR00308 TRM1 tRNA(guanine-26 97.3 0.00098 2.1E-08 67.6 9.0 101 76-185 45-147 (374)
461 TIGR02143 trmA_only tRNA (urac 97.3 0.00049 1.1E-08 69.8 6.8 58 76-135 198-256 (353)
462 KOG2730 Methylase [General fun 97.3 0.0004 8.6E-09 62.8 5.3 76 75-152 94-171 (263)
463 COG0357 GidB Predicted S-adeno 97.3 0.0027 5.8E-08 58.8 10.6 131 377-533 68-202 (215)
464 COG0220 Predicted S-adenosylme 97.3 0.0035 7.6E-08 58.9 11.6 110 378-505 50-169 (227)
465 KOG0820 Ribosomal RNA adenine 97.3 0.0017 3.8E-08 60.8 9.2 100 353-467 36-135 (315)
466 PF11968 DUF3321: Putative met 97.2 0.0031 6.7E-08 57.7 10.3 140 359-527 30-182 (219)
467 PF04816 DUF633: Family of unk 97.2 0.0024 5.1E-08 59.2 9.7 120 380-524 1-122 (205)
468 KOG1709 Guanidinoacetate methy 97.2 0.0014 3.1E-08 59.1 7.8 115 355-486 83-200 (271)
469 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.2 0.00073 1.6E-08 64.4 6.4 143 373-525 53-238 (256)
470 PRK11760 putative 23S rRNA C24 97.2 0.011 2.3E-07 58.3 14.2 84 374-484 209-295 (357)
471 TIGR02987 met_A_Alw26 type II 97.2 0.0026 5.6E-08 68.5 11.0 48 376-423 31-87 (524)
472 COG0421 SpeE Spermidine syntha 97.1 0.011 2.3E-07 57.6 13.8 100 378-486 78-184 (282)
473 PRK11524 putative methyltransf 97.1 0.035 7.5E-07 54.7 17.8 58 362-421 195-252 (284)
474 PRK10742 putative methyltransf 97.1 0.0018 4E-08 60.9 8.0 99 375-481 85-190 (250)
475 COG0030 KsgA Dimethyladenosine 97.1 0.0023 5E-08 60.8 8.7 90 365-468 19-108 (259)
476 PF01269 Fibrillarin: Fibrilla 97.1 0.015 3.2E-07 53.5 13.5 155 352-527 45-213 (229)
477 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.1 0.0024 5.2E-08 62.6 9.0 114 70-185 80-219 (283)
478 TIGR00027 mthyl_TIGR00027 meth 97.1 0.0029 6.4E-08 61.1 9.4 167 65-238 72-248 (260)
479 PF07091 FmrO: Ribosomal RNA m 97.1 0.003 6.4E-08 59.3 8.9 93 62-159 91-184 (251)
480 PF09243 Rsm22: Mitochondrial 97.1 0.009 1.9E-07 58.3 12.8 131 374-525 31-167 (274)
481 KOG2915 tRNA(1-methyladenosine 97.1 0.01 2.3E-07 55.7 12.3 138 368-527 97-236 (314)
482 PF05958 tRNA_U5-meth_tr: tRNA 97.1 0.0016 3.4E-08 66.1 7.6 63 68-133 190-253 (352)
483 PF13578 Methyltransf_24: Meth 97.0 0.00034 7.4E-09 57.7 2.2 99 80-185 1-105 (106)
484 PF03141 Methyltransf_29: Puta 97.0 0.002 4.4E-08 65.9 8.1 102 378-504 119-223 (506)
485 COG1889 NOP1 Fibrillarin-like 97.0 0.0071 1.5E-07 54.3 10.1 108 71-184 72-179 (231)
486 COG2384 Predicted SAM-dependen 96.9 0.0095 2.1E-07 54.5 10.7 126 74-240 15-143 (226)
487 COG1189 Predicted rRNA methyla 96.8 0.0069 1.5E-07 56.1 8.9 148 74-241 78-225 (245)
488 PF02384 N6_Mtase: N-6 DNA Met 96.8 0.0024 5.2E-08 63.9 6.5 106 373-486 43-177 (311)
489 KOG1663 O-methyltransferase [S 96.8 0.0083 1.8E-07 55.2 9.2 103 374-486 71-177 (237)
490 PF00398 RrnaAD: Ribosomal RNA 96.8 0.0039 8.4E-08 60.6 7.7 102 364-479 18-119 (262)
491 COG5459 Predicted rRNA methyla 96.8 0.0023 5E-08 62.0 5.7 116 74-190 112-230 (484)
492 COG4262 Predicted spermidine s 96.8 0.0082 1.8E-07 58.6 9.4 108 74-185 288-407 (508)
493 KOG3115 Methyltransferase-like 96.7 0.0038 8.1E-08 55.9 6.3 111 74-185 59-183 (249)
494 PF01795 Methyltransf_5: MraW 96.7 0.0043 9.3E-08 60.7 7.4 73 62-134 7-79 (310)
495 PF13679 Methyltransf_32: Meth 96.7 0.0072 1.6E-07 52.6 7.8 49 375-423 24-77 (141)
496 COG4262 Predicted spermidine s 96.7 0.07 1.5E-06 52.4 14.8 175 322-524 242-434 (508)
497 cd00315 Cyt_C5_DNA_methylase C 96.6 0.024 5.2E-07 55.5 11.7 124 379-525 2-142 (275)
498 PF06962 rRNA_methylase: Putat 96.6 0.016 3.5E-07 49.6 8.9 86 101-190 1-97 (140)
499 COG0144 Sun tRNA and rRNA cyto 96.5 0.025 5.3E-07 57.4 11.5 134 374-524 154-315 (355)
500 COG1889 NOP1 Fibrillarin-like 96.5 0.11 2.4E-06 46.9 13.6 151 355-527 51-215 (231)
No 1
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=257.61 Aligned_cols=251 Identities=48% Similarity=0.826 Sum_probs=229.7
Q ss_pred ccccccCCCCCCCCChhHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCC--eEEEEcCCccccHHHH
Q 008457 16 APKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRK--DVLEVGCGAGNTIFPL 93 (564)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~VLDiGcG~G~~~~~l 93 (564)
.....+..+..-.....+..+|+..+.+|||.||+.+.++|+++++|+..+|.+++...... +||+||||.|.....+
T Consensus 10 ~a~~~~k~~~~~~~~~~~~~~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPl 89 (264)
T KOG2361|consen 10 AARKKVKEQSASRVLEEEVVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPL 89 (264)
T ss_pred HHHHHHhhccccccchhhhhhhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchh
Confidence 34444556666677788888999999999999999999999999999999999988753333 8999999999999999
Q ss_pred HHhCCC--cEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHH
Q 008457 94 IAAYPD--VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNI 171 (564)
Q Consensus 94 ~~~~~~--~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~ 171 (564)
++..|+ ..|+++|.||.+++..+++......++...+.|+..+.+..++..+++|+|++.++|-.++++....+++++
T Consensus 90 l~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl 169 (264)
T KOG2361|consen 90 LKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNL 169 (264)
T ss_pred hhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHH
Confidence 998766 899999999999999999987777888888899988887778899999999999999999999999999999
Q ss_pred HhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeeeeeccccccccc
Q 008457 172 KKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARE 251 (564)
Q Consensus 172 ~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~ 251 (564)
+++|||||.+++.+++..+..+.++. ..+.+..++|.+++|+..|+|+.+++.++|.++||..++..+..+...++.++
T Consensus 170 ~~llKPGG~llfrDYg~~DlaqlRF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~ 248 (264)
T KOG2361|consen 170 RTLLKPGGSLLFRDYGRYDLAQLRFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQ 248 (264)
T ss_pred HHHhCCCcEEEEeecccchHHHHhcc-CCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccceeeeeeehhcc
Confidence 99999999999999999999999887 78889999999999999999999999999999999999999999999999999
Q ss_pred cccceeEEEEEEEecC
Q 008457 252 LVMNRRWVQAVFCSSG 267 (564)
Q Consensus 252 ~~~~~~~l~~~~~~~~ 267 (564)
+.|+|.|+++.|+||.
T Consensus 249 lkm~Rvwvq~~f~k~~ 264 (264)
T KOG2361|consen 249 LKMYRVWVQAKFQKPL 264 (264)
T ss_pred CccceEEEEEEeecCC
Confidence 9999999999999874
No 2
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.97 E-value=1.8e-28 Score=259.45 Aligned_cols=367 Identities=18% Similarity=0.169 Sum_probs=232.9
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+.+...++.+|||||||+|.++..|++. ..+|+|+|+++.|++.++.... ...++.++++|+....+ +++++
T Consensus 28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~-~~~~i~~~~~d~~~~~~--~~~~~ 102 (475)
T PLN02336 28 EILSLLPPYEGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESING-HYKNVKFMCADVTSPDL--NISDG 102 (475)
T ss_pred HHHhhcCccCCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhc-cCCceEEEEeccccccc--CCCCC
Confidence 3344454456789999999999999999988 5689999999999998865432 23578999999864433 56788
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
+||+|++..+++|++.+++..++++++++|||||.+++.+........ . .. ......+.+...|.
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~--~-----------~~--~~~~~~~~~~~~~~ 167 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGD--S-----------KR--KNNPTHYREPRFYT 167 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCc--c-----------cc--cCCCCeecChHHHH
Confidence 999999999999998777899999999999999999998754321100 0 00 01122234678999
Q ss_pred HHHHhCCCcEEEeeeeeccccccccccccceeEEEEEEEecCCCCCCccchhhhhhhcccccchhhhhhhhhcCcCCCcc
Q 008457 226 SLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSE 305 (564)
Q Consensus 226 ~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~i~~~~ 305 (564)
++|.++||.........-... ..++...+.+|......-..... .+.... ..-...+++.+....
T Consensus 168 ~~f~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~y~~- 232 (475)
T PLN02336 168 KVFKECHTRDEDGNSFELSLV---------GCKCIGAYVKNKKNQNQICWLWQ--KVSSTN---DKGFQRFLDNVQYKS- 232 (475)
T ss_pred HHHHHheeccCCCCEEEEEEE---------EeechhhhhhccCCcceEEEEEE--eecCCc---chhHHHHhhhhcccc-
Confidence 999999998765433221111 01122233344433332211000 000000 001111111100000
Q ss_pred cccchHHHHhhhCCCCCCCceEEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCC
Q 008457 306 VDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGC 385 (564)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~ 385 (564)
..+-. +..+|+. . ..++.+..-++.+.....+.++.+|||+||
T Consensus 233 ~~i~~--~~~f~g~----------------~-------------------~~v~~~v~~te~l~~~~~~~~~~~vLDiGc 275 (475)
T PLN02336 233 SGILR--YERVFGE----------------G-------------------FVSTGGLETTKEFVDKLDLKPGQKVLDVGC 275 (475)
T ss_pred ccHHH--HHHHhCC----------------C-------------------CCCCchHHHHHHHHHhcCCCCCCEEEEEec
Confidence 00000 0011111 0 112222222333333333446789999999
Q ss_pred cccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceee
Q 008457 386 GCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY 465 (564)
Q Consensus 386 G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y 465 (564)
|+|.++..++.....+|+++|+|+.+++.+++|..... .++.+...|+... ++++++||+|++.++++
T Consensus 276 G~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-----~~v~~~~~d~~~~-------~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 276 GIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-----CSVEFEVADCTKK-------TYPDNSFDVIYSRDTIL 343 (475)
T ss_pred cCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-----CceEEEEcCcccC-------CCCCCCEEEEEECCccc
Confidence 99988777776556699999999999999998865221 3567766666543 23456899999999999
Q ss_pred CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-------------------CChhHHHHHHHHcCCeEEEEc
Q 008457 466 IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------VDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 466 ~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-------------------~~~~~~~~~~~~~g~~~~~~~ 525 (564)
+..+.+.+++.+.++| +|+| .++++...+. .+...+.+.+.++||.+..+.
T Consensus 344 h~~d~~~~l~~~~r~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 344 HIQDKPALFRSFFKWL-KPGG--------KVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred ccCCHHHHHHHHHHHc-CCCe--------EEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 9999999999999999 9988 7776643321 122355677888899988664
No 3
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.94 E-value=6.3e-27 Score=211.58 Aligned_cols=153 Identities=31% Similarity=0.423 Sum_probs=101.4
Q ss_pred CCCccceechhHHHHHHHHhcC------CCCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhc
Q 008457 350 CRSTGLMLWESAHLMAAVLARN------PTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTAN 422 (564)
Q Consensus 350 ~~~~G~~~W~~~~~l~~~l~~~------~~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n 422 (564)
...+|..+|+++.+|++||..+ +..+++++|||||||+|..++.++.. ++.+|++||+++ ++++++.|++.|
T Consensus 13 ~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N 91 (173)
T PF10294_consen 13 GDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELN 91 (173)
T ss_dssp ----------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT
T ss_pred ccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhc
Confidence 4589999999999999999994 56789999999999999444444444 478999999987 999999999999
Q ss_pred CCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 423 LKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 423 ~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
+. ....++.+..++|++....+ .+...+||+||++||+|+.+.+++|++++.++| +++| .++++++.
T Consensus 92 ~~-~~~~~v~v~~L~Wg~~~~~~---~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll-~~~~--------~vl~~~~~ 158 (173)
T PF10294_consen 92 GS-LLDGRVSVRPLDWGDELDSD---LLEPHSFDVILASDVLYDEELFEPLVRTLKRLL-KPNG--------KVLLAYKR 158 (173)
T ss_dssp ---------EEEE--TTS-HHHH---HHS-SSBSEEEEES--S-GGGHHHHHHHHHHHB-TT-T--------TEEEEEE-
T ss_pred cc-cccccccCcEEEecCccccc---ccccccCCEEEEecccchHHHHHHHHHHHHHHh-CCCC--------EEEEEeCE
Confidence 84 22368999999999742211 234568999999999999999999999999999 8876 49999999
Q ss_pred ccCChhHHHHHHHH
Q 008457 503 RQVDEPSMLSAATQ 516 (564)
Q Consensus 503 r~~~~~~~~~~~~~ 516 (564)
|+.....|++.+++
T Consensus 159 R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 159 RRKSEQEFFDRLKK 172 (173)
T ss_dssp S-TGGCHHHHHH--
T ss_pred ecHHHHHHHHHhhh
Confidence 98777889999876
No 4
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.88 E-value=1.6e-22 Score=183.81 Aligned_cols=207 Identities=20% Similarity=0.192 Sum_probs=151.7
Q ss_pred CCCCChhHHHHHHHHHhHhHHHHHHhhccccccccch--------hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhC
Q 008457 26 NTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHY--------LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY 97 (564)
Q Consensus 26 ~~~~~~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~ 97 (564)
+.+++....+.|++.+..|||... .++..|. +.......+. .++.+|||||||.|.++..+++.
T Consensus 9 ~~~id~~e~~~F~~la~~wwd~~g------~f~~LH~~N~~rl~~i~~~~~~~~~-l~g~~vLDvGCGgG~Lse~mAr~- 80 (243)
T COG2227 9 TQNVDYKELDKFEALASRWWDPEG------EFKPLHKINPLRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARL- 80 (243)
T ss_pred cccCCHHHHHHHHHHHhhhcCCCC------ceeeeeeeccchhhhhhhhhhcccC-CCCCeEEEecCCccHhhHHHHHC-
Confidence 567888899999999999999632 2233332 2222211111 58999999999999999999999
Q ss_pred CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCC
Q 008457 98 PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKP 177 (564)
Q Consensus 98 ~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lkp 177 (564)
|.+|+|+|+++.+++.|+.+....+..+.|.+..+.+... ..++||+|+|..||+|++ ++..+++.+.+++||
T Consensus 81 -Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~----~~~~FDvV~cmEVlEHv~--dp~~~~~~c~~lvkP 153 (243)
T COG2227 81 -GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLAS----AGGQFDVVTCMEVLEHVP--DPESFLRACAKLVKP 153 (243)
T ss_pred -CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHh----cCCCccEEEEhhHHHccC--CHHHHHHHHHHHcCC
Confidence 7999999999999999999988777778888877754322 337999999999999996 788899999999999
Q ss_pred CeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEE-eeeeecccccc
Q 008457 178 TGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEE-LGLCCKQVENR 248 (564)
Q Consensus 178 gG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~-~~~~~~~~~~~ 248 (564)
||.+++++.+.......-..-....+.. +.+.+.+....+..++++..++..+|+.+.. ....+.+..+.
T Consensus 154 ~G~lf~STinrt~ka~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~y~p~~~~ 224 (243)
T COG2227 154 GGILFLSTINRTLKAYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLTYNPLTNS 224 (243)
T ss_pred CcEEEEeccccCHHHHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhcccCCceEEeecceEeccccce
Confidence 9999999988654322211111111221 2232223333488999999999999988876 45566666553
No 5
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.86 E-value=9.1e-21 Score=186.68 Aligned_cols=214 Identities=16% Similarity=0.215 Sum_probs=143.1
Q ss_pred CCCCCCChhHHHHHHHHHhHhHHHHH---HhhccccccccchhHHHHhhhc-------cCCCCCeEEEEcCCccccHHHH
Q 008457 24 TPNTGVSPFWRDKYEREAKKYWDLFY---KRHQDRFFKDRHYLDKEWGRYF-------SGAGRKDVLEVGCGAGNTIFPL 93 (564)
Q Consensus 24 ~~~~~~~~~~~~~y~~~a~~ywd~~~---~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~VLDiGcG~G~~~~~l 93 (564)
+...++++...++|++.+.+||+... .-+.-+ -....++...+.+.+ ...++.+|||||||+|.++..|
T Consensus 71 ~~~~s~~~~e~~~f~~~a~~WW~~~g~~~~lh~~N-~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~L 149 (322)
T PLN02396 71 STTTSLNEDELAKFSAIADTWWHSEGPFKPLHQMN-PTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPL 149 (322)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCchHHHHhC-hHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHH
Confidence 34457888899999999999998411 000000 001112222222222 1246779999999999999998
Q ss_pred HHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHH
Q 008457 94 IAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNI 171 (564)
Q Consensus 94 ~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~ 171 (564)
++. +.+|+|+|+++++++.|+.+..... .++.+.++|+.. + ++++++||+|++..+++|++ ++..+++++
T Consensus 150 a~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~--l--~~~~~~FD~Vi~~~vLeHv~--d~~~~L~~l 221 (322)
T PLN02396 150 ARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK--L--ADEGRKFDAVLSLEVIEHVA--NPAEFCKSL 221 (322)
T ss_pred HHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHH--h--hhccCCCCEEEEhhHHHhcC--CHHHHHHHH
Confidence 875 7899999999999999997754322 478899988743 2 34568999999999999995 778999999
Q ss_pred HhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEe-eeeeccccc
Q 008457 172 KKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEEL-GLCCKQVEN 247 (564)
Q Consensus 172 ~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~-~~~~~~~~~ 247 (564)
.++|||||.+++.+.+...............+ ..+..........+++++++..+++++||+++++ ...+++..+
T Consensus 222 ~r~LkPGG~liist~nr~~~~~~~~i~~~eyi-~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~~~~p~~~ 297 (322)
T PLN02396 222 SALTIPNGATVLSTINRTMRAYASTIVGAEYI-LRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGFVYNPITG 297 (322)
T ss_pred HHHcCCCcEEEEEECCcCHHHHHHhhhhHHHH-HhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeeeEEcCcCC
Confidence 99999999999998775422110000000000 0011111111223679999999999999999875 445555444
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.86 E-value=1.4e-20 Score=175.18 Aligned_cols=192 Identities=20% Similarity=0.253 Sum_probs=139.4
Q ss_pred hhHHHHHHHHHhHhHHHHHHhhcccc--ccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCC
Q 008457 31 PFWRDKYEREAKKYWDLFYKRHQDRF--FKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFS 108 (564)
Q Consensus 31 ~~~~~~y~~~a~~ywd~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s 108 (564)
......|+..|.+|-.. +.. +...+.+...+.+.+...++.+|||||||||.++..+++..+.++|+++|+|
T Consensus 11 ~~v~~vF~~ia~~YD~~------n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s 84 (238)
T COG2226 11 EKVQKVFDKVAKKYDLM------NDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDIS 84 (238)
T ss_pred HHHHHHHHhhHHHHHhh------cccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECC
Confidence 34667888888887221 111 1111222333444444458999999999999999999999778899999999
Q ss_pred hHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 109 PRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 109 ~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+.|++.|+++....+ .+++|+.+|+.. + ||++++||+|.+.+.|++++ ++..+|++++|+|||||++++.++.
T Consensus 85 ~~ML~~a~~k~~~~~~~~i~fv~~dAe~--L--Pf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 85 ESMLEVAREKLKKKGVQNVEFVVGDAEN--L--PFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred HHHHHHHHHHhhccCccceEEEEechhh--C--CCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 999999999986533 349999999954 3 78999999999999999995 8999999999999999999999887
Q ss_pred CCchhhh-h-----hcc-cccccccceeecCCCcee---------eccCHHHHHHHHHhCCCcEEE
Q 008457 188 IGDLAQE-R-----LTG-KDQKISENFYVRGDGTRA---------FYFSNDFLTSLFKENGFDVEE 237 (564)
Q Consensus 188 ~~~~~~~-~-----~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~l~~aGf~~~~ 237 (564)
.+..... . +.. ..+.+..... ..... .+.+.+++..+++++||..+.
T Consensus 159 ~p~~~~~~~~~~~~~~~~v~P~~g~~~~---~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 159 KPDNPVLRKAYILYYFKYVLPLIGKLVA---KDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred CCCchhhHHHHHHHHHHhHhhhhceeee---cChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 6543211 1 111 1121111111 11111 156899999999999999876
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.83 E-value=1.2e-20 Score=178.17 Aligned_cols=197 Identities=22% Similarity=0.260 Sum_probs=89.8
Q ss_pred hHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChH
Q 008457 32 FWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPR 110 (564)
Q Consensus 32 ~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~ 110 (564)
.....|+..|..| |...... .+.... .+...+.+.+...++.+|||+|||||.++..+++. .+..+|+|+|+|+.
T Consensus 8 ~v~~~Fd~ia~~Y-D~~n~~l--s~g~~~-~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ 83 (233)
T PF01209_consen 8 YVRKMFDRIAPRY-DRMNDLL--SFGQDR-RWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPG 83 (233)
T ss_dssp ---------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HH
T ss_pred HHHHHHHHHHHHh-CCCcccc--CCcHHH-HHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHH
Confidence 3566788888776 3321110 111111 22234445555678999999999999999999887 45689999999999
Q ss_pred HHHHHHhccccc-CCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 111 AVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 111 ~l~~a~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
|++.|+++.... ..+++++++|+... |+++++||+|++.+.+++++ ++..++++++|+|||||++++.++..+
T Consensus 84 ML~~a~~k~~~~~~~~i~~v~~da~~l----p~~d~sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 84 MLEVARKKLKREGLQNIEFVQGDAEDL----PFPDNSFDAVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp HHHHHHHHHHHTT--SEEEEE-BTTB------S-TT-EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred HHHHHHHHHHhhCCCCeeEEEcCHHHh----cCCCCceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 999999987543 24899999999653 67899999999999999995 788999999999999999999988766
Q ss_pred chhhhh-hc----c-cccccccce------eecCCCceeeccCHHHHHHHHHhCCCcEEEe
Q 008457 190 DLAQER-LT----G-KDQKISENF------YVRGDGTRAFYFSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 190 ~~~~~~-~~----~-~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 238 (564)
.....+ +. . ..+.+...+ |.........+.+.+++.++++++||+.++.
T Consensus 158 ~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 158 RNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp SSHHHHHHHHH--------------------------------------------------
T ss_pred CCchhhceeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 432211 11 0 111111000 0000111122568999999999999987654
No 8
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=3.1e-20 Score=155.72 Aligned_cols=159 Identities=23% Similarity=0.361 Sum_probs=130.7
Q ss_pred CCcc-ceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCC
Q 008457 351 RSTG-LMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPF 427 (564)
Q Consensus 351 ~~~G-~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~ 427 (564)
+.|| .++||+..+||.++++++..+.+++|||||.|--++++++.+.. ...|..||.++++++..++-+..|...
T Consensus 3 dntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s-- 80 (201)
T KOG3201|consen 3 DNTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS-- 80 (201)
T ss_pred CCCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc--
Confidence 3455 68999999999999999999999999999999877888777754 468999999999999999988888554
Q ss_pred CCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh
Q 008457 428 LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE 507 (564)
Q Consensus 428 ~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~ 507 (564)
+--++..+.|....+-. ......||+|+++||+|..+.++.|+++|+++| +|.| .+++..++|..+.
T Consensus 81 -~~tsc~vlrw~~~~aqs---q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL-~p~g--------~Al~fsPRRg~sL 147 (201)
T KOG3201|consen 81 -SLTSCCVLRWLIWGAQS---QQEQHTFDIILAADCLFFDEHHESLVDTIKSLL-RPSG--------RALLFSPRRGQSL 147 (201)
T ss_pred -ccceehhhHHHHhhhHH---HHhhCcccEEEeccchhHHHHHHHHHHHHHHHh-Cccc--------ceeEecCcccchH
Confidence 22233344443222211 123458999999999999999999999999999 9988 6888889999999
Q ss_pred hHHHHHHHHcCCeEEEE
Q 008457 508 PSMLSAATQCGFRLVDK 524 (564)
Q Consensus 508 ~~~~~~~~~~g~~~~~~ 524 (564)
..|.+.+...||.|..-
T Consensus 148 ~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 148 QKFLDEVGTVGFTVCLE 164 (201)
T ss_pred HHHHHHHHhceeEEEec
Confidence 99999999999988753
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.81 E-value=7.1e-19 Score=170.25 Aligned_cols=199 Identities=18% Similarity=0.195 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCCh
Q 008457 31 PFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSP 109 (564)
Q Consensus 31 ~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~ 109 (564)
+...+.|+..|..| |...... .......+.....+.+...++.+|||+|||+|.++..+++.. +..+|+|+|+|+
T Consensus 33 ~~v~~~f~~~A~~Y-D~~~~~~---s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~ 108 (261)
T PLN02233 33 NERQALFNRIAPVY-DNLNDLL---SLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS 108 (261)
T ss_pred HHHHHHHHHhhhHH-HHhhhhh---cCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence 44566778877765 3321110 000011112222334455678999999999999999888873 557999999999
Q ss_pred HHHHHHHhccc----ccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 110 RAVNLVMTHKD----FTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 110 ~~l~~a~~~~~----~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|++.|+++.. ....+++++++|+... |+++++||+|+++.++||++ ++..++++++|+|||||.+++.+
T Consensus 109 ~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l----p~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 109 EQLAVAASRQELKAKSCYKNIEWIEGDATDL----PFDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred HHHHHHHHHhhhhhhccCCCeEEEEcccccC----CCCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEE
Confidence 99999987643 1235789999998542 56889999999999999995 78899999999999999999998
Q ss_pred cCCCchhhhh-hccc-----ccccccceeecCC------CceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 186 YAIGDLAQER-LTGK-----DQKISENFYVRGD------GTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 186 ~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~------~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
+......... +..+ ...+... +.... .....+++.+++.++++++||+.+....
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 183 FNKSTQPFTTSMQEWMIDNVVVPVATG-YGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred CCCCCcHHHHHHHHHHHhhhhhHHHHH-hCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEE
Confidence 8765422111 1000 0000000 00000 0112267999999999999999876533
No 10
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.80 E-value=1.2e-19 Score=165.83 Aligned_cols=216 Identities=21% Similarity=0.241 Sum_probs=146.3
Q ss_pred cCCCCCCCCChhHHHHHHHHHhHhHHHHHHhhcccc--ccccchhHHHHhhhccC-CC------CCeEEEEcCCccccHH
Q 008457 21 IYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRF--FKDRHYLDKEWGRYFSG-AG------RKDVLEVGCGAGNTIF 91 (564)
Q Consensus 21 ~~~~~~~~~~~~~~~~y~~~a~~ywd~~~~~~~~~~--~~~~~~~~~~~~~~l~~-~~------~~~VLDiGcG~G~~~~ 91 (564)
......-+++.....+|+..+..|||.-...+.-+- .....++...+.+.... .| +++|||+|||+|-++.
T Consensus 26 ~s~~s~~si~~~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSe 105 (282)
T KOG1270|consen 26 LSQASTTSIDVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSE 105 (282)
T ss_pred ccccceecccHHHHHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccch
Confidence 455566667777788999999999997321111111 11122333333333311 22 4889999999999999
Q ss_pred HHHHhCCCcEEEEEeCChHHHHHHHhcccccC---C----CeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHH
Q 008457 92 PLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---T----RVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKM 164 (564)
Q Consensus 92 ~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~---~----~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~ 164 (564)
.|++. +.+|+|+|+++.|++.|+.+....+ . ++.|.+.++.. ..+.||+|+|..+++|+ .++
T Consensus 106 pLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~-------~~~~fDaVvcsevleHV--~dp 174 (282)
T KOG1270|consen 106 PLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG-------LTGKFDAVVCSEVLEHV--KDP 174 (282)
T ss_pred hhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh-------cccccceeeeHHHHHHH--hCH
Confidence 99999 7899999999999999999843322 2 35566666643 23469999999999999 699
Q ss_pred HHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEE-eeeeec
Q 008457 165 SLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEE-LGLCCK 243 (564)
Q Consensus 165 ~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~-~~~~~~ 243 (564)
..++..+.++|||||.+++++.+........-. ..........+.+.++...|.+++++..++..+|+++.. ....+.
T Consensus 175 ~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i-~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~G~~y~ 253 (282)
T KOG1270|consen 175 QEFLNCLSALLKPNGRLFITTINRTILSFAGTI-FLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVGEVYN 253 (282)
T ss_pred HHHHHHHHHHhCCCCceEeeehhhhHHHhhccc-cHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhhccccc
Confidence 999999999999999999998776433211100 001111112222333334488999999999999998876 355555
Q ss_pred ccccc
Q 008457 244 QVENR 248 (564)
Q Consensus 244 ~~~~~ 248 (564)
++.++
T Consensus 254 p~s~~ 258 (282)
T KOG1270|consen 254 PISGQ 258 (282)
T ss_pred cccce
Confidence 55543
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.77 E-value=3.1e-18 Score=172.28 Aligned_cols=155 Identities=19% Similarity=0.215 Sum_probs=116.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||||||+|.++..+++.+ +++|+|+|+|+.|++.|+++....+ .++++.++|+... ++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~----~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ----PFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC----CCCCCCccEEE
Confidence 567899999999999999999876 7899999999999999988754332 5789999998543 56789999999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhh--hhc----ccccccccceeecCCCceeeccCHHHHH
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE--RLT----GKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
+..+++|++ +...++++++++|||||.+++.++........ .+. .....+...+ ....+.+.+++.
T Consensus 192 s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~------~~p~~~s~~~~~ 263 (340)
T PLN02244 192 SMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAY------YLPAWCSTSDYV 263 (340)
T ss_pred ECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhc------cCCCCCCHHHHH
Confidence 999999995 67899999999999999999987653221100 000 0000000000 011235899999
Q ss_pred HHHHhCCCcEEEeeee
Q 008457 226 SLFKENGFDVEELGLC 241 (564)
Q Consensus 226 ~~l~~aGf~~~~~~~~ 241 (564)
++++++||..+.....
T Consensus 264 ~~l~~aGf~~v~~~d~ 279 (340)
T PLN02244 264 KLAESLGLQDIKTEDW 279 (340)
T ss_pred HHHHHCCCCeeEeeeC
Confidence 9999999999876544
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.76 E-value=2e-17 Score=160.37 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=122.2
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
..+.+.+...++.+|||||||+|..+..+++.+ +++|+|+|+|+.+++.|+++... ..++.+.++|+... ++++
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~----~~~~ 115 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKK----DFPE 115 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccC----CCCC
Confidence 344455566788999999999999999888764 67999999999999999987653 45789999998642 5678
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch--hhhhhcccccccccceeecCCCceeeccCHH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL--AQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
++||+|++..+++|++.+++..++++++++|||||.+++.++..... ....+.... ......+.+.+
T Consensus 116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 184 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYI-----------KKRKYTLIPIQ 184 (263)
T ss_pred CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHH-----------HhcCCCCCCHH
Confidence 89999999999999976789999999999999999999988754321 111110000 00011245899
Q ss_pred HHHHHHHhCCCcEEEeee
Q 008457 223 FLTSLFKENGFDVEELGL 240 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~ 240 (564)
++.++++++||+.+....
T Consensus 185 ~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 185 EYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred HHHHHHHHCCCCeeeEEe
Confidence 999999999999887644
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.75 E-value=7.4e-18 Score=163.40 Aligned_cols=196 Identities=16% Similarity=0.215 Sum_probs=129.8
Q ss_pred HHHHHHhHhHHHHHHhhccccccccch-hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHH
Q 008457 36 KYEREAKKYWDLFYKRHQDRFFKDRHY-LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL 114 (564)
Q Consensus 36 ~y~~~a~~ywd~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~ 114 (564)
.|++.|.+|-+..|............+ -...+.+.+. .++.+|||+|||+|.++..+++. +.+|+++|+|+.|++.
T Consensus 5 ~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~ 81 (255)
T PRK11036 5 NFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQR 81 (255)
T ss_pred ChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 477777777665543322221111000 0112223333 45789999999999999999987 6899999999999999
Q ss_pred HHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchh
Q 008457 115 VMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLA 192 (564)
Q Consensus 115 a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~ 192 (564)
|+++....+ .+++++++|+.... ++++++||+|++..+++|++ ++..+++++.++|||||.+++..++.....
T Consensus 82 a~~~~~~~g~~~~v~~~~~d~~~l~---~~~~~~fD~V~~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~ 156 (255)
T PRK11036 82 AKQAAEAKGVSDNMQFIHCAAQDIA---QHLETPVDLILFHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMFYNANGLL 156 (255)
T ss_pred HHHHHHhcCCccceEEEEcCHHHHh---hhcCCCCCEEEehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEEECccHHH
Confidence 998865433 46888888885431 23568999999999999994 678899999999999999999877654321
Q ss_pred hhh-hcccccccccceee--cCCCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 193 QER-LTGKDQKISENFYV--RGDGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 193 ~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
... +............. .......+.++++++.++++++||+++...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~ 206 (255)
T PRK11036 157 MHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKT 206 (255)
T ss_pred HHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeee
Confidence 111 11100100001100 001112235789999999999999987543
No 14
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.74 E-value=3.9e-15 Score=163.27 Aligned_cols=185 Identities=17% Similarity=0.184 Sum_probs=124.5
Q ss_pred EEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEc
Q 008457 327 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 406 (564)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD 406 (564)
.+.+...|..+.|..... ..||.. ++- +..-.++.. ..++++|||||||+|+++..++..++.+|+++|
T Consensus 500 ~~~v~e~g~~f~v~~~~~------~~tG~f-lDq-r~~R~~~~~---~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD 568 (702)
T PRK11783 500 FLEVTEYGAKLLVNLTDY------LDTGLF-LDH-RPTRRMIGQ---MAKGKDFLNLFAYTGTASVHAALGGAKSTTTVD 568 (702)
T ss_pred eEEEEECCEEEEEEcCCC------CcceEC-HHH-HHHHHHHHH---hcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEe
Confidence 344556676666654322 356632 111 112223322 236789999999999998888887777899999
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC------------CChHHHH
Q 008457 407 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP------------EAILPLF 474 (564)
Q Consensus 407 ~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~------------~~~~~l~ 474 (564)
+|+.+++.+++|+..|++.. .++++...|.. +.+..+ ..+||+|++ |..|.. ..+..++
T Consensus 569 ~s~~al~~a~~N~~~ng~~~--~~v~~i~~D~~-----~~l~~~-~~~fDlIil-DPP~f~~~~~~~~~~~~~~~y~~l~ 639 (702)
T PRK11783 569 MSNTYLEWAERNFALNGLSG--RQHRLIQADCL-----AWLKEA-REQFDLIFI-DPPTFSNSKRMEDSFDVQRDHVALI 639 (702)
T ss_pred CCHHHHHHHHHHHHHhCCCc--cceEEEEccHH-----HHHHHc-CCCcCEEEE-CCCCCCCCCccchhhhHHHHHHHHH
Confidence 99999999999999998742 34565554432 111122 458999985 444432 2457788
Q ss_pred HHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCCCCCCCCc--cccccccc
Q 008457 475 ATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPS--ESIISSWF 542 (564)
Q Consensus 475 ~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~ 542 (564)
..+.++| +|+| .++++...+.... -...+.+.|+.+..+.....|..-+ -+|..||.
T Consensus 640 ~~a~~lL-~~gG--------~l~~~~~~~~~~~--~~~~~~~~g~~~~~i~~~~~~~Dhp~~~~~~~~~~ 698 (702)
T PRK11783 640 KDAKRLL-RPGG--------TLYFSNNKRGFKM--DEEGLAKLGLKAEEITAKTLPPDFARNPKIHNCWL 698 (702)
T ss_pred HHHHHHc-CCCC--------EEEEEeCCccCCh--hHHHHHhCCCeEEEEecCCCCCCCCCCcccceeEE
Confidence 9999999 9988 8888877766554 2677778899999998665555543 44555765
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.74 E-value=4.6e-17 Score=157.92 Aligned_cols=160 Identities=17% Similarity=0.139 Sum_probs=113.1
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+.+...++.+|||||||+|.++..+++..|+.+|+|+|+|+.|++.|+++ +++++++|+... .+++
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~-----~~~~ 88 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDW-----KPKP 88 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhC-----CCCC
Confidence 33444555678999999999999999999988889999999999999999764 477888887532 1457
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccc---cccccceeecCCCceeeccCHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKD---QKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
+||+|+++.++||++ ++..++++++++|||||.+++..+.............. .................+.+.+
T Consensus 89 ~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 166 (255)
T PRK14103 89 DTDVVVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPA 166 (255)
T ss_pred CceEEEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence 899999999999996 67899999999999999999976542111111110000 0000000000000112246899
Q ss_pred HHHHHHHhCCCcEEEe
Q 008457 223 FLTSLFKENGFDVEEL 238 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~ 238 (564)
++.++|+++||.+...
T Consensus 167 ~~~~~l~~aGf~v~~~ 182 (255)
T PRK14103 167 GYAELLTDAGCKVDAW 182 (255)
T ss_pred HHHHHHHhCCCeEEEE
Confidence 9999999999986543
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.73 E-value=5.5e-17 Score=155.29 Aligned_cols=201 Identities=20% Similarity=0.207 Sum_probs=133.8
Q ss_pred hhHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCCh
Q 008457 31 PFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSP 109 (564)
Q Consensus 31 ~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~ 109 (564)
......|+..+..| |..... ..+.. .......+...+...++.+|||+|||+|.++..+++.. ++.+|+|+|+|+
T Consensus 5 ~~~~~~f~~~a~~y-d~~~~~--~~~~~-~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 80 (231)
T TIGR02752 5 ERVHKVFEKIYKKY-DRMNSV--ISFQR-HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE 80 (231)
T ss_pred HHHHHHHHHhhhHH-hHHHHH--hcCCc-hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH
Confidence 44566777777665 432111 01111 22222344455555778999999999999999998874 678999999999
Q ss_pred HHHHHHHhccccc-CCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 110 RAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 110 ~~l~~a~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
.+++.|+++.... ..+++++++|+... ++++++||+|++..+++|++ ++..+++++.++|+|||.+++.+...
T Consensus 81 ~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 81 NMLSVGRQKVKDAGLHNVELVHGNAMEL----PFDDNSFDYVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred HHHHHHHHHHHhcCCCceEEEEechhcC----CCCCCCccEEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 9999999876432 25788899988543 45678999999999999985 67789999999999999999987655
Q ss_pred Cchhhhhh-c----c-cccccccce----eec--CCCceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 189 GDLAQERL-T----G-KDQKISENF----YVR--GDGTRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 189 ~~~~~~~~-~----~-~~~~~~~~~----~~~--~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
+.....+. . . ..+.....+ ... .......+++.+++.++++++||..+++...
T Consensus 155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 219 (231)
T TIGR02752 155 PTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSY 219 (231)
T ss_pred CCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEc
Confidence 43221110 0 0 000000000 000 0011123568999999999999998865443
No 17
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.73 E-value=3.6e-17 Score=147.34 Aligned_cols=141 Identities=26% Similarity=0.374 Sum_probs=105.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..++.+|||||||+|.++..+++. +.+++|+|+++.+++. .++.....+.... ..++++||+|+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~---------~~~~~~~~~~~~~----~~~~~~fD~i~~ 84 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK---------RNVVFDNFDAQDP----PFPDGSFDLIIC 84 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH---------TTSEEEEEECHTH----HCHSSSEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh---------hhhhhhhhhhhhh----hccccchhhHhh
Confidence 378899999999999999999777 5699999999999988 1122222222211 236789999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
+.+|+|++ ++..+|+++.++|||||.+++.++.........+..+.. ....+.+..+++.+++..+++++|
T Consensus 85 ~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ll~~~G 155 (161)
T PF13489_consen 85 NDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRY-------DRPYGGHVHFFSPDELRQLLEQAG 155 (161)
T ss_dssp ESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCG-------TCHHTTTTEEBBHHHHHHHHHHTT
T ss_pred HHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCC-------cCccCceeccCCHHHHHHHHHHCC
Confidence 99999996 799999999999999999999998865322222211110 010113345789999999999999
Q ss_pred CcEEE
Q 008457 233 FDVEE 237 (564)
Q Consensus 233 f~~~~ 237 (564)
|++++
T Consensus 156 ~~iv~ 160 (161)
T PF13489_consen 156 FEIVE 160 (161)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99875
No 18
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.72 E-value=1.6e-15 Score=159.70 Aligned_cols=311 Identities=14% Similarity=0.187 Sum_probs=183.7
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
++.+|||+|||+|.++..++...|+.+|+++|+|+.+++.|+++....+ .++.++++|+.. .++.++||+|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-----~~~~~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-----NIEKQKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-----hCcCCCccEEEE
Confidence 3568999999999999999988888999999999999999998865433 468888888743 234568999999
Q ss_pred ccc--------------ccCCC----------hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccccccccccee
Q 008457 153 VFV--------------LSAVS----------PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFY 208 (564)
Q Consensus 153 ~~v--------------l~~~~----------~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (564)
+-- ..|-| .+....+++++.+.|+|||.+++. .+.
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~-------------------- 271 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF-------------------- 271 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC--------------------
Confidence 531 11111 123456788899999999999874 221
Q ss_pred ecCCCceeeccCHHHHHHHHHhCCCcEEEeeeeeccccccccccccceeEEEEEEEecCCCCCCccchhhhhhhcccccc
Q 008457 209 VRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAII 288 (564)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (564)
-..+.+.+++.+.||..+.+.. ...++.+-+.....-+...+.+.... .+..+..
T Consensus 272 ----------~q~~~v~~~~~~~g~~~~~~~~---D~~g~~R~v~~~~~~~~rs~~rr~g~-----------~~~~~q~- 326 (506)
T PRK01544 272 ----------KQEEAVTQIFLDHGYNIESVYK---DLQGHSRVILISPINLNRSYARRIGK-----------SLSGVQQ- 326 (506)
T ss_pred ----------chHHHHHHHHHhcCCCceEEEe---cCCCCceEEEeccccCCcceeccCCC-----------CCCHHHH-
Confidence 1366788899999998665532 22222111100000001111111000 0010010
Q ss_pred hhhhhhhhhcCcCCCcccccchHHHHhhhCCCCCCCceEEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHH
Q 008457 289 EPDVAANTLKEPMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVL 368 (564)
Q Consensus 289 e~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l 368 (564)
. ..+.+.+ ..+. .|++ +.
T Consensus 327 --~--------------------~~e~~~p---------------------------------~~~i-~~ek------lf 344 (506)
T PRK01544 327 --N--------------------LLDNELP---------------------------------KYLF-SKEK------LV 344 (506)
T ss_pred --H--------------------HHHhhhh---------------------------------hhCC-CHHH------hC
Confidence 0 0000000 0000 0000 10
Q ss_pred hcCCCCCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh
Q 008457 369 ARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI 447 (564)
Q Consensus 369 ~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~ 447 (564)
...+..+||||||.|.+...+|...+ ..++++|+....+..+.+.+...++ .++.+...+.. .+ .
T Consensus 345 -----~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l----~N~~~~~~~~~---~~--~ 410 (506)
T PRK01544 345 -----NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI----TNFLLFPNNLD---LI--L 410 (506)
T ss_pred -----CCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC----CeEEEEcCCHH---HH--H
Confidence 11456899999999988777777654 5899999988877776666665554 34554433221 01 1
Q ss_pred hhhcCCCccEEEEe--ceeeCCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcC-
Q 008457 448 KEENNEGFEVILGT--DVSYIPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG- 518 (564)
Q Consensus 448 ~~~~~~~fD~Ii~~--d~~y~~~------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g- 518 (564)
..++++++|-|... |.-.-.. .-+.+++.+.++| +++| .+.+.+-...... ..++.+.+.+
T Consensus 411 ~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~L-k~gG--------~i~~~TD~~~y~~-~~~~~~~~~~~ 480 (506)
T PRK01544 411 NDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKL-KDNG--------NLVFASDIENYFY-EAIELIQQNGN 480 (506)
T ss_pred HhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhc-CCCC--------EEEEEcCCHHHHH-HHHHHHHhCCC
Confidence 12456788887632 3221111 5688999999999 9988 8877655443332 1234444444
Q ss_pred CeEE
Q 008457 519 FRLV 522 (564)
Q Consensus 519 ~~~~ 522 (564)
|+..
T Consensus 481 f~~~ 484 (506)
T PRK01544 481 FEII 484 (506)
T ss_pred eEec
Confidence 6554
No 19
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.72 E-value=4.6e-16 Score=141.27 Aligned_cols=190 Identities=19% Similarity=0.271 Sum_probs=134.6
Q ss_pred HHHHHHHHhHhHHHHHHhhccccccccc--hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCC------cEEEEE
Q 008457 34 RDKYEREAKKYWDLFYKRHQDRFFKDRH--YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPD------VFVYAC 105 (564)
Q Consensus 34 ~~~y~~~a~~ywd~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~------~~v~~i 105 (564)
...|+..|+.| |..+ +...-..| | ...+...+.+.+++++||++||||..+..+++..+. .+|+.+
T Consensus 63 ~~vF~~vA~~Y-D~mN----D~mSlGiHRlW-Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~ 136 (296)
T KOG1540|consen 63 HHVFESVAKKY-DIMN----DAMSLGIHRLW-KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVL 136 (296)
T ss_pred HHHHHHHHHHH-HHHH----HHhhcchhHHH-HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEE
Confidence 44566666664 3322 22222333 3 334445567788999999999999999999988555 789999
Q ss_pred eCChHHHHHHHhcccccC----CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEE
Q 008457 106 DFSPRAVNLVMTHKDFTE----TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYV 181 (564)
Q Consensus 106 D~s~~~l~~a~~~~~~~~----~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~l 181 (564)
|++|+|+..++++..+.+ ..+.++++|+.+. ||++++||+.++.+.+..++ ++.+.|++++|+|||||++
T Consensus 137 Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L----pFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf 210 (296)
T KOG1540|consen 137 DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL----PFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRF 210 (296)
T ss_pred eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC----CCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEE
Confidence 999999999998874322 3478899998543 68999999999999999995 8899999999999999999
Q ss_pred EEEecCCCch-hhhhh-----cccccccccceeecCCC--------ceeeccCHHHHHHHHHhCCCcEEE
Q 008457 182 LFRDYAIGDL-AQERL-----TGKDQKISENFYVRGDG--------TRAFYFSNDFLTSLFKENGFDVEE 237 (564)
Q Consensus 182 ii~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~l~~aGf~~~~ 237 (564)
.+.++..-.. ....+ ....+.+... .+++. ....+.+.+++..+.+++||..+.
T Consensus 211 ~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~--iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 211 SCLEFSKVENEPLKWFYDQYSFDVLPVLGEI--IAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred EEEEccccccHHHHHHHHhhhhhhhchhhHh--hhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 9988775441 21111 1112222211 11111 111256889999999999998875
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.72 E-value=1.4e-16 Score=147.73 Aligned_cols=149 Identities=20% Similarity=0.238 Sum_probs=111.2
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~ 143 (564)
..+.+.+...++.+|||+|||+|.++..|++. +.+|+|+|+|+.|++.+++.....+ .++++.+.|+... ++
T Consensus 20 ~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~----~~- 92 (197)
T PRK11207 20 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL----TF- 92 (197)
T ss_pred HHHHHhcccCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC----Cc-
Confidence 34444455567789999999999999999987 6799999999999999988765433 3578888887543 22
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDF 223 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (564)
+++||+|+++.++||++++++..+++++.++|+|||++++......... . . .....+.++.++
T Consensus 93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~--~--------------~-~~~~~~~~~~~e 155 (197)
T PRK11207 93 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY--P--------------C-TVGFPFAFKEGE 155 (197)
T ss_pred CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC--C--------------C-CCCCCCccCHHH
Confidence 3579999999999999878899999999999999999765433221100 0 0 001123468999
Q ss_pred HHHHHHhCCCcEEEee
Q 008457 224 LTSLFKENGFDVEELG 239 (564)
Q Consensus 224 l~~~l~~aGf~~~~~~ 239 (564)
+.++++ ||+++...
T Consensus 156 l~~~~~--~~~~~~~~ 169 (197)
T PRK11207 156 LRRYYE--GWEMVKYN 169 (197)
T ss_pred HHHHhC--CCeEEEee
Confidence 999997 89887653
No 21
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.70 E-value=5.8e-16 Score=144.42 Aligned_cols=171 Identities=16% Similarity=0.159 Sum_probs=119.9
Q ss_pred hHHHHHHhhccccc-cccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-
Q 008457 44 YWDLFYKRHQDRFF-KDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF- 121 (564)
Q Consensus 44 ywd~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~- 121 (564)
+|+..|......+- ...+.....+.+.+...++.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+....
T Consensus 2 ~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~ 79 (213)
T TIGR03840 2 FWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLT 79 (213)
T ss_pred hHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCC
Confidence 67777766543332 222322233333332246789999999999999999998 89999999999999986442211
Q ss_pred ------------cCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 122 ------------TETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 122 ------------~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
...++++.++|+..... -..+.||.|+...+++|++++....+++.+.++|||||++++..+...
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~ 156 (213)
T TIGR03840 80 PTVTQQGEFTRYRAGNIEIFCGDFFALTA---ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYD 156 (213)
T ss_pred cceeccccceeeecCceEEEEccCCCCCc---ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence 23568899999965431 123579999999999999999999999999999999998777655432
Q ss_pred chhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 190 DLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
... .+...+.++.+++.++|.. +|.+....
T Consensus 157 ~~~-------------------~~gpp~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 157 QSE-------------------MAGPPFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred CCC-------------------CCCcCCCCCHHHHHHHhcC-CceEEEEe
Confidence 110 0112235689999999963 56665543
No 22
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.69 E-value=2.4e-16 Score=146.01 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=110.3
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++....+.++.+...|+... ++ ++
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~----~~-~~ 93 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAA----AL-NE 93 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhc----cc-cC
Confidence 3344444456789999999999999999987 68999999999999999887654444567777776432 22 35
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
+||+|+++.++||++.++...++++++++|||||++++.++...... .. .....+.++++++.
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~----------------~~-~~~~~~~~~~~el~ 156 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADY----------------PC-HMPFSFTFKEDELR 156 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCC----------------CC-CCCcCccCCHHHHH
Confidence 79999999999999877889999999999999999776554321110 00 01112356899999
Q ss_pred HHHHhCCCcEEEee
Q 008457 226 SLFKENGFDVEELG 239 (564)
Q Consensus 226 ~~l~~aGf~~~~~~ 239 (564)
++|. +|+++...
T Consensus 157 ~~f~--~~~~~~~~ 168 (195)
T TIGR00477 157 QYYA--DWELLKYN 168 (195)
T ss_pred HHhC--CCeEEEee
Confidence 9996 58887654
No 23
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.69 E-value=6.4e-16 Score=152.78 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=113.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||||||+|.++..+++..++.+|+++|+|+.|++.|+++.. ..+++++.+|+... ++++++||+|+++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~l----p~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDL----PFPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhC----CCCCCceeEEEEc
Confidence 46789999999999999999888777899999999999999998754 24678888888543 4577899999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.+++|++ +...++++++++|||||.+++.+......+..+.. .. ....+.+.+++.++++++||
T Consensus 186 ~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~------~~--------~~~~~~t~eEl~~lL~~aGF 249 (340)
T PLN02490 186 GSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFF------AD--------VWMLFPKEEEYIEWFTKAGF 249 (340)
T ss_pred ChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHh------hh--------hhccCCCHHHHHHHHHHCCC
Confidence 9999996 56789999999999999998865443221111110 00 00113478999999999999
Q ss_pred cEEEeeeee
Q 008457 234 DVEELGLCC 242 (564)
Q Consensus 234 ~~~~~~~~~ 242 (564)
+.+++....
T Consensus 250 ~~V~i~~i~ 258 (340)
T PLN02490 250 KDVKLKRIG 258 (340)
T ss_pred eEEEEEEcC
Confidence 998876543
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.69 E-value=1.6e-16 Score=133.75 Aligned_cols=107 Identities=23% Similarity=0.364 Sum_probs=89.9
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcc--cccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK--DFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~--~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
|+.+|||+|||+|.++..+++..++.+|+|+|+|+.+++.|+++. .....++++++.|+ .... . ..+.||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~-~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP--D-FLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT--T-TSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc--c-cCCCCCEEEE
Confidence 578999999999999999999777999999999999999999987 33458999999999 2221 1 3456999999
Q ss_pred cc-cccCCC-hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 153 VF-VLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 153 ~~-vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.. +++++. .++...+++++.+.|+|||++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99 666443 3678899999999999999999875
No 25
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.69 E-value=1.5e-16 Score=153.16 Aligned_cols=162 Identities=19% Similarity=0.236 Sum_probs=114.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHh--CCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~--~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
.++.+|||||||+|..+..+++. .|+.+++|+|+|+.|++.|+++.... ..+++++++|+... +...+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~------~~~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI------AIENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC------CCCCCCE
Confidence 57789999999999999888873 57899999999999999999987543 24789999988542 2245899
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCc-hh-hhhhcccccccc-cceeec----C--C--Cceeec
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD-LA-QERLTGKDQKIS-ENFYVR----G--D--GTRAFY 218 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~-~~-~~~~~~~~~~~~-~~~~~~----~--~--~~~~~~ 218 (564)
|+++.++||+++++...++++++++|||||.+++.+..... .. ...+........ ..-+.. . . ......
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~ 208 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLT 208 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccc
Confidence 99999999998777889999999999999999998744321 11 111111000000 000000 0 0 011224
Q ss_pred cCHHHHHHHHHhCCCcEEEeeee
Q 008457 219 FSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 219 ~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
.+.++..++|+++||..+...+.
T Consensus 209 ~~~~~~~~~L~~aGF~~v~~~~~ 231 (247)
T PRK15451 209 DSVETHKARLHKAGFEHSELWFQ 231 (247)
T ss_pred CCHHHHHHHHHHcCchhHHHHHH
Confidence 68999999999999987655443
No 26
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.69 E-value=9e-16 Score=148.72 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=123.7
Q ss_pred hHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHH
Q 008457 32 FWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRA 111 (564)
Q Consensus 32 ~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~ 111 (564)
.....|++.+..| +.+.. -.......+.+.+...++.+|||+|||+|.++..++.. +.+|+++|+|+.|
T Consensus 8 ~i~~~F~~aa~~Y-~~~~~--------~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~ 76 (251)
T PRK10258 8 AIAAAFGRAAAHY-EQHAE--------LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPM 76 (251)
T ss_pred HHHHHHHHHHHhH-hHHHH--------HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHH
Confidence 3455677766665 22110 11123344445555456789999999999999988876 6899999999999
Q ss_pred HHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch
Q 008457 112 VNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL 191 (564)
Q Consensus 112 l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~ 191 (564)
++.|+++.. ...++++|+... ++++++||+|+++.+++|.+ ++..++.++.++|+|||.++++.+.....
T Consensus 77 l~~a~~~~~----~~~~~~~d~~~~----~~~~~~fD~V~s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 146 (251)
T PRK10258 77 LAQARQKDA----ADHYLAGDIESL----PLATATFDLAWSNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLVQGSL 146 (251)
T ss_pred HHHHHhhCC----CCCEEEcCcccC----cCCCCcEEEEEECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCCCCch
Confidence 999988753 246788888542 45778999999999999984 78899999999999999999998876553
Q ss_pred hhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcE
Q 008457 192 AQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDV 235 (564)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 235 (564)
....- ....+. .......+++.+++..++...|+..
T Consensus 147 ~el~~--~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 147 PELHQ--AWQAVD------ERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred HHHHH--HHHHhc------cCCccccCCCHHHHHHHHHhCCcee
Confidence 32211 000000 0112223678999999999888764
No 27
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.68 E-value=3.1e-16 Score=148.64 Aligned_cols=195 Identities=23% Similarity=0.260 Sum_probs=131.0
Q ss_pred hHHHHHHHHHhHhHHHHHHhhcc--ccc----cccchhHHHHhhhcc--CCCCCeEEEEcCCccccHHHHHHhCCCcEEE
Q 008457 32 FWRDKYEREAKKYWDLFYKRHQD--RFF----KDRHYLDKEWGRYFS--GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVY 103 (564)
Q Consensus 32 ~~~~~y~~~a~~ywd~~~~~~~~--~~~----~~~~~~~~~~~~~l~--~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~ 103 (564)
....+|+.....-|+..|..+.. ... .....+...+.+.+. ..++.+|||+|||+|.++..++.. +.+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~ 81 (219)
T TIGR02021 4 QVRHYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVK 81 (219)
T ss_pred HHHHHhCchhHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEE
Confidence 34556666666678776653211 000 111122333444444 356899999999999999999887 67899
Q ss_pred EEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEE
Q 008457 104 ACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYV 181 (564)
Q Consensus 104 ~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~l 181 (564)
|+|+|+.|++.|+++..... .++.+.++|+... + ++||+|++..+++|++.+++..+++++.+++++++.+
T Consensus 82 gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~-~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i 154 (219)
T TIGR02021 82 AVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL------C-GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIF 154 (219)
T ss_pred EEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC------C-CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999998865433 4788999888542 2 7899999999999998778889999999999987666
Q ss_pred EEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 182 LFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 182 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
.+..... ..... ..+...+.........++++++++.++++++||+++......
T Consensus 155 ~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 155 TFAPKTA---WLAFL----KMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred EECCCch---HHHHH----HHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 5532211 11100 001111111111233456799999999999999998776544
No 28
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.68 E-value=1.5e-15 Score=151.06 Aligned_cols=158 Identities=20% Similarity=0.175 Sum_probs=111.8
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhc--ccccCCCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH--KDFTETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~--~~~~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+...++.+|||||||+|.++..+++.++ ..|+|+|+|+.++..++.. ......++.+..+|+.. + ++ +++|
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~--l--p~-~~~F 190 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ--L--PA-LKAF 190 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH--C--CC-cCCc
Confidence 45456789999999999999999998853 3699999999998765433 22123578899888853 2 33 6789
Q ss_pred eEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHH
Q 008457 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSL 227 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (564)
|+|+|..+++|. .++..+|+++++.|+|||.+++.+.............. ..|... ....+..+.+++..+
T Consensus 191 D~V~s~~vl~H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~------~~y~~~-~~~~~lps~~~l~~~ 261 (322)
T PRK15068 191 DTVFSMGVLYHR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG------DRYAKM-RNVYFIPSVPALKNW 261 (322)
T ss_pred CEEEECChhhcc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch------hHHhcC-ccceeCCCHHHHHHH
Confidence 999999999998 47889999999999999999997654322111100000 000000 001123488999999
Q ss_pred HHhCCCcEEEeeeee
Q 008457 228 FKENGFDVEELGLCC 242 (564)
Q Consensus 228 l~~aGf~~~~~~~~~ 242 (564)
++++||+.+++....
T Consensus 262 L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 262 LERAGFKDVRIVDVS 276 (322)
T ss_pred HHHcCCceEEEEeCC
Confidence 999999998775543
No 29
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=1.2e-16 Score=151.33 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=121.8
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+...+|++|||||||.|.++..+++++ +++|+|+++|+++.+.++++....+ .++++...|..+ ..+
T Consensus 65 ~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd-------~~e 136 (283)
T COG2230 65 LEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD-------FEE 136 (283)
T ss_pred HHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc-------ccc
Confidence 345666999999999999999999999998 8999999999999999999765444 568888888854 235
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
.||.|++..+++|+..+....+++.++++|+|||.+++.+......... .....+...++ .++.. .+...+.
T Consensus 137 ~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiF--PgG~l---Ps~~~i~ 208 (283)
T COG2230 137 PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIF--PGGEL---PSISEIL 208 (283)
T ss_pred ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---cchHHHHHhCC--CCCcC---CCHHHHH
Confidence 5999999999999998889999999999999999999987765543221 11111112222 12222 2678888
Q ss_pred HHHHhCCCcEEEeee
Q 008457 226 SLFKENGFDVEELGL 240 (564)
Q Consensus 226 ~~l~~aGf~~~~~~~ 240 (564)
+..+++||.+.....
T Consensus 209 ~~~~~~~~~v~~~~~ 223 (283)
T COG2230 209 ELASEAGFVVLDVES 223 (283)
T ss_pred HHHHhcCcEEehHhh
Confidence 889999999876544
No 30
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.68 E-value=5.2e-16 Score=149.11 Aligned_cols=159 Identities=19% Similarity=0.220 Sum_probs=113.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHh--CCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~--~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
.++.+|||+|||+|.++..+++. .|+++++|+|+|+.|++.|+++.... ..+++++++|+.... ...+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE------IKNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC------CCCCCE
Confidence 46789999999999999999886 46899999999999999999876532 246889999986432 235899
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch-hhhh-hcccccccc--ccee-------ecCCCceeec
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL-AQER-LTGKDQKIS--ENFY-------VRGDGTRAFY 218 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~-~~~~-~~~~~~~~~--~~~~-------~~~~~~~~~~ 218 (564)
|++..++||+++++...++++++++|||||.+++.++..... .... +........ ..+- ...-......
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 205 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRT 205 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCC
Confidence 999999999987788999999999999999999988654321 1111 000000000 0000 0000011235
Q ss_pred cCHHHHHHHHHhCCCcEEEe
Q 008457 219 FSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 219 ~~~~~l~~~l~~aGf~~~~~ 238 (564)
++.+++..+++++||..+..
T Consensus 206 ~s~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 206 DSIETHKARLKNVGFSHVEL 225 (239)
T ss_pred CCHHHHHHHHHHcCCchHHH
Confidence 69999999999999986543
No 31
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.68 E-value=5.3e-16 Score=148.66 Aligned_cols=201 Identities=18% Similarity=0.189 Sum_probs=133.4
Q ss_pred CCChhHHHHHHHHHhHhHHHHHHhhccccccccchh-HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEe
Q 008457 28 GVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYL-DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACD 106 (564)
Q Consensus 28 ~~~~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD 106 (564)
+..+....+|+..|..||+.+......+ ..... ...+...+...++.+|||||||+|.++..+++. +.+++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD 77 (233)
T PRK05134 3 NVDPAEIAKFSALAARWWDPNGEFKPLH---RINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL--GADVTGID 77 (233)
T ss_pred cccHHHHHHHHHHHHHHhccCCCcHHHH---HhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEc
Confidence 3455677899999999998742111100 00111 122223333467899999999999999988876 67899999
Q ss_pred CChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 107 FSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 107 ~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+++.+++.++++.......+.+...++.... ....++||+|++..+++|++ ++..+++.+.++|+|||.+++..+
T Consensus 78 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 78 ASEENIEVARLHALESGLKIDYRQTTAEELA---AEHPGQFDVVTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEecCHHHhh---hhcCCCccEEEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEec
Confidence 9999999998876544445677776664321 12357899999999999995 677899999999999999999876
Q ss_pred CCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 187 AIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
........... ........+..........+++.+++.++++++||+++...
T Consensus 153 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 153 NRNLKSYLLAI-VGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred CCChHHHHHHH-hhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 53221111000 00000000111111222346789999999999999988753
No 32
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.68 E-value=6.5e-16 Score=135.62 Aligned_cols=161 Identities=23% Similarity=0.324 Sum_probs=115.2
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-cCCCee-EEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVS-TFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-~~~~i~-~~~~d~~~~~~~~~~~~~~f 147 (564)
++.......||+||||||..-. +....|++.|+++|+++.|-+.|.++... ...++. |+.++..+ ++ .+++++|
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfk-fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~--l~-~l~d~s~ 146 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFK-FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGEN--LP-QLADGSY 146 (252)
T ss_pred HhcccCccceEEecccCCCCcc-cccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhc--Cc-ccccCCe
Confidence 4444667789999999998843 33444789999999999999999887653 335565 77777644 21 3589999
Q ss_pred eEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHH
Q 008457 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSL 227 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (564)
|+|++..+|+.. +++.+.|+++.|+|||||++++.++.......... -+.+...+.++...+|++. +++.+ +.
T Consensus 147 DtVV~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~-i~q~v~ep~~~~~~dGC~l---trd~~-e~ 219 (252)
T KOG4300|consen 147 DTVVCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNR-ILQQVAEPLWHLESDGCVL---TRDTG-EL 219 (252)
T ss_pred eeEEEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchHHHH-HHHHHhchhhheeccceEE---ehhHH-HH
Confidence 999999999988 68999999999999999999999998765322111 1122222223344456554 55554 67
Q ss_pred HHhCCCcEEEeeee
Q 008457 228 FKENGFDVEELGLC 241 (564)
Q Consensus 228 l~~aGf~~~~~~~~ 241 (564)
++++-|+.......
T Consensus 220 Leda~f~~~~~kr~ 233 (252)
T KOG4300|consen 220 LEDAEFSIDSCKRF 233 (252)
T ss_pred hhhcccccchhhcc
Confidence 78888988765443
No 33
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.67 E-value=3.3e-16 Score=127.46 Aligned_cols=95 Identities=26% Similarity=0.300 Sum_probs=81.4
Q ss_pred EEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCC
Q 008457 80 LEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAV 159 (564)
Q Consensus 80 LDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~ 159 (564)
||+|||+|..+..+++. ++.+|+++|+++.+++.++++... .++.+.+.|+... |+++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l----~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDL----PFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSS----SS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhC----ccccccccccccccceeec
Confidence 89999999999999998 688999999999999999998753 3455888887643 6789999999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCeEEEE
Q 008457 160 SPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 160 ~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
+++..+++++.|+|||||++++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 6899999999999999999986
No 34
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.67 E-value=2.7e-16 Score=151.92 Aligned_cols=164 Identities=16% Similarity=0.211 Sum_probs=112.2
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+.+.+...++.+|||||||.|.++..+++++ +++|+|+.+|++..+.++++....+ .++++...|..+.
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~------- 124 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL------- 124 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--------
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-------
Confidence 33445566899999999999999999999997 8999999999999999998876544 5788999988542
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccc-ccccccceeecCCCceeeccCHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGK-DQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
+.+||.|++..+++|+...+...+++++.++|||||.+++................ ...+....| ..+. ..+..
T Consensus 125 ~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiF--Pgg~---lps~~ 199 (273)
T PF02353_consen 125 PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIF--PGGY---LPSLS 199 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTS--TTS------BHH
T ss_pred CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeC--CCCC---CCCHH
Confidence 23999999999999998888999999999999999999997666544322211110 111222222 1222 23678
Q ss_pred HHHHHHHhCCCcEEEeeeee
Q 008457 223 FLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~~~ 242 (564)
++...++++||++.......
T Consensus 200 ~~~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 200 EILRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHHHHTT-EEEEEEE-H
T ss_pred HHHHHHhcCCEEEEEEEEcC
Confidence 88889999999988765543
No 35
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.66 E-value=1.1e-15 Score=162.06 Aligned_cols=157 Identities=21% Similarity=0.259 Sum_probs=118.9
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+.+...++.+|||||||+|..+..+++.. +++|+|+|+|+.+++.|+++......++++.++|+... +++++
T Consensus 257 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~----~~~~~ 331 (475)
T PLN02336 257 EFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKK----TYPDN 331 (475)
T ss_pred HHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccC----CCCCC
Confidence 33444444678899999999999999888875 78999999999999999887654456789999998643 45678
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhh-hhhcccccccccceeecCCCceeeccCHHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQ-ERLTGKDQKISENFYVRGDGTRAFYFSNDFL 224 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (564)
+||+|++..+++|++ ++..++++++++|||||.+++.++....... ..+.... ...+ ....+.+++
T Consensus 332 ~fD~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~---------~~~g--~~~~~~~~~ 398 (475)
T PLN02336 332 SFDVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYI---------KQRG--YDLHDVQAY 398 (475)
T ss_pred CEEEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHH---------HhcC--CCCCCHHHH
Confidence 999999999999995 7889999999999999999998875432110 0000000 0011 124588999
Q ss_pred HHHHHhCCCcEEEeee
Q 008457 225 TSLFKENGFDVEELGL 240 (564)
Q Consensus 225 ~~~l~~aGf~~~~~~~ 240 (564)
.++++++||+++....
T Consensus 399 ~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 399 GQMLKDAGFDDVIAED 414 (475)
T ss_pred HHHHHHCCCeeeeeec
Confidence 9999999999886543
No 36
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.66 E-value=1.6e-15 Score=149.11 Aligned_cols=152 Identities=22% Similarity=0.255 Sum_probs=105.7
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc------CCCeeEEEecCCcccccCCCCCCcee
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT------ETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~------~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++.... ..++.|...|+.. .+++||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-------l~~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-------LSGKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-------cCCCcC
Confidence 5789999999999999999987 789999999999999999886532 2457788887632 247899
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHH
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLF 228 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 228 (564)
+|+|..+++|++.+....+++.+.+ +.+||.++ .. .+..... .+. ..+.+.+.........++++.+++++++
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~-~p~~~~~-~~l---~~~g~~~~g~~~~~r~y~~s~eel~~lL 287 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII-SF-APKTLYY-DIL---KRIGELFPGPSKATRAYLHAEADVERAL 287 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-Ee-CCcchHH-HHH---HHHHhhcCCCCcCceeeeCCHHHHHHHH
Confidence 9999999999986666677887775 45665544 32 2221111 111 1111111111112334566899999999
Q ss_pred HhCCCcEEEeeeee
Q 008457 229 KENGFDVEELGLCC 242 (564)
Q Consensus 229 ~~aGf~~~~~~~~~ 242 (564)
+++||++.......
T Consensus 288 ~~AGf~v~~~~~~~ 301 (315)
T PLN02585 288 KKAGWKVARREMTA 301 (315)
T ss_pred HHCCCEEEEEEEee
Confidence 99999988665543
No 37
>PRK06202 hypothetical protein; Provisional
Probab=99.66 E-value=1.9e-15 Score=144.56 Aligned_cols=158 Identities=21% Similarity=0.204 Sum_probs=111.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHh----CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA----YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
.++.+|||+|||+|.++..|++. +++.+|+|+|+|+.|++.|+++... .++.+.+.+.... +.++++||+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~l----~~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--PGVTFRQAVSDEL----VAEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--CCCeEEEEecccc----cccCCCccE
Confidence 56789999999999998888753 4567999999999999999887542 3456666654322 235689999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCce--eeccCHHHHHHH
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTR--AFYFSNDFLTSL 227 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~ 227 (564)
|+++.++||+++++...+++++.++++ |.+++.+..........+...........+...++.. ..+++.+++.++
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~l 210 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAAL 210 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHH
Confidence 999999999986667889999999998 6667776665532221111111111112222233322 237899999999
Q ss_pred HHhCCCcEEEeee
Q 008457 228 FKENGFDVEELGL 240 (564)
Q Consensus 228 l~~aGf~~~~~~~ 240 (564)
+++ ||++...+.
T Consensus 211 l~~-Gf~~~~~~~ 222 (232)
T PRK06202 211 APQ-GWRVERQWP 222 (232)
T ss_pred hhC-CCeEEeccc
Confidence 999 999876544
No 38
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.66 E-value=4.2e-15 Score=139.17 Aligned_cols=173 Identities=16% Similarity=0.188 Sum_probs=119.6
Q ss_pred HhHHHHHHhhccccc-cccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc
Q 008457 43 KYWDLFYKRHQDRFF-KDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF 121 (564)
Q Consensus 43 ~ywd~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~ 121 (564)
.+|+..|......+. ...+.....+...+...++.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+....
T Consensus 4 ~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l 81 (218)
T PRK13255 4 DFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGL 81 (218)
T ss_pred hHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCC
Confidence 468877766543331 233322222322233356789999999999999999998 89999999999999987432211
Q ss_pred -------------cCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 122 -------------TETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 122 -------------~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
...++++.++|+..... -..+.||.|+...+++|++++....+++.+.++|+|||++++..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~---~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~ 158 (218)
T PRK13255 82 TPQTRQSGEFEHYQAGEITIYCGDFFALTA---ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDY 158 (218)
T ss_pred CccccccccccccccCceEEEECcccCCCc---ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEe
Confidence 13578889999875421 12358999999999999999999999999999999999766543332
Q ss_pred CchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 189 GDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
.... .+..++.++.+++.++|.. +|.+.....
T Consensus 159 ~~~~-------------------~~gPp~~~~~~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 159 PQEE-------------------LAGPPFSVSDEEVEALYAG-CFEIELLER 190 (218)
T ss_pred CCcc-------------------CCCCCCCCCHHHHHHHhcC-CceEEEeee
Confidence 1110 0112235699999999953 377765543
No 39
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.65 E-value=1.7e-15 Score=148.75 Aligned_cols=160 Identities=18% Similarity=0.131 Sum_probs=109.6
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhc--ccccCCCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH--KDFTETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~--~~~~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+...++.+|||||||+|.++..++..++ ..|+|+|+|+.|+..++.. ......++.+..+++.. + + +..+|
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~--l--p-~~~~F 189 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ--L--H-ELYAF 189 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH--C--C-CCCCc
Confidence 34456789999999999999988888743 3799999999998765432 11223467777777643 2 2 23589
Q ss_pred eEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHH
Q 008457 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSL 227 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (564)
|+|+|..+++|++ ++..+|++++++|||||.|++.+.............. ..+.. -....+..+.+++..+
T Consensus 190 D~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~------~ry~k-~~nv~flpS~~~L~~~ 260 (314)
T TIGR00452 190 DTVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK------DRYAK-MKNVYFIPSVSALKNW 260 (314)
T ss_pred CEEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch------HHHHh-ccccccCCCHHHHHHH
Confidence 9999999999994 7889999999999999999997654322110000000 00000 0011123589999999
Q ss_pred HHhCCCcEEEeeeeecc
Q 008457 228 FKENGFDVEELGLCCKQ 244 (564)
Q Consensus 228 l~~aGf~~~~~~~~~~~ 244 (564)
++++||+.+++......
T Consensus 261 L~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 261 LEKVGFENFRILDVLKT 277 (314)
T ss_pred HHHCCCeEEEEEeccCC
Confidence 99999999876554433
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.65 E-value=3e-15 Score=147.43 Aligned_cols=140 Identities=17% Similarity=0.266 Sum_probs=108.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+.++++...|+.... .+++||+|++.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-----~~~~fD~I~~~ 191 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-----IQEEYDFILST 191 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-----ccCCccEEEEc
Confidence 44569999999999999999987 789999999999999998877655557888888875422 25789999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.+++|+++++...+++++.++|+|||++++......... . ......+.+++.++.+.+.. |
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~----------------~-~~~p~~~~~~~~el~~~~~~--~ 252 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY----------------P-CPMPFSFTFKEGELKDYYQD--W 252 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccC----------------C-CCCCCCcccCHHHHHHHhCC--C
Confidence 999999878899999999999999999776543321110 0 01112335789999999964 8
Q ss_pred cEEEee
Q 008457 234 DVEELG 239 (564)
Q Consensus 234 ~~~~~~ 239 (564)
+++...
T Consensus 253 ~i~~~~ 258 (287)
T PRK12335 253 EIVKYN 258 (287)
T ss_pred EEEEEe
Confidence 887754
No 41
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.64 E-value=2.3e-15 Score=135.87 Aligned_cols=146 Identities=21% Similarity=0.266 Sum_probs=106.1
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCc
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
+.+.+...++.++||+|||.|+.+..|+++ |..|+++|.|+.+++.+++.....+..++..+.|+....+ ++.
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~-----~~~ 94 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF-----PEE 94 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS------TTT
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc-----cCC
Confidence 333344457899999999999999999999 8999999999999999888766566778999999865432 368
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHH
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 226 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (564)
||+|++..+++|++++....+++.+...++|||++++..+...+.. +. .....+.+.+.++..
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~----------------p~-~~~~~f~~~~~EL~~ 157 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDY----------------PC-PSPFPFLLKPGELRE 157 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS-------------------SS--S--B-TTHHHH
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCC----------------CC-CCCCCcccCHHHHHH
Confidence 9999999999999999999999999999999999988655422110 00 111233467888988
Q ss_pred HHHhCCCcEEEe
Q 008457 227 LFKENGFDVEEL 238 (564)
Q Consensus 227 ~l~~aGf~~~~~ 238 (564)
.+. ||+++..
T Consensus 158 ~y~--dW~il~y 167 (192)
T PF03848_consen 158 YYA--DWEILKY 167 (192)
T ss_dssp HTT--TSEEEEE
T ss_pred HhC--CCeEEEE
Confidence 886 6888764
No 42
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.64 E-value=3.3e-15 Score=145.44 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=113.2
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
..+...+...++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.|+++. .++.+..+|+... .+.
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~-----~~~ 91 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASW-----QPP 91 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhcc-----CCC
Confidence 3444555556789999999999999999999888899999999999999998875 3578888888532 145
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccc---cccccceeecCCCceeeccCH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKD---QKISENFYVRGDGTRAFYFSN 221 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 221 (564)
++||+|+++.++||++ +...+++++.++|||||.+++..+.............. ......+. ........+.+.
T Consensus 92 ~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~ 168 (258)
T PRK01683 92 QALDLIFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLP-DRGARRAPLPPP 168 (258)
T ss_pred CCccEEEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhc-cccccCcCCCCH
Confidence 6899999999999995 67889999999999999999875332111111100000 00000000 001011234578
Q ss_pred HHHHHHHHhCCCcEEE
Q 008457 222 DFLTSLFKENGFDVEE 237 (564)
Q Consensus 222 ~~l~~~l~~aGf~~~~ 237 (564)
..+.+++.++|+.+..
T Consensus 169 ~~~~~~l~~~g~~v~~ 184 (258)
T PRK01683 169 HAYYDALAPAACRVDI 184 (258)
T ss_pred HHHHHHHHhCCCceee
Confidence 8899999999987543
No 43
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.64 E-value=2.9e-15 Score=143.38 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=126.8
Q ss_pred hHHHHHHHHHhHhHHHHHHhhcccccc-----ccchhHHHHhhhcc---CCCCCeEEEEcCCccccHHHHHHhCCCcEEE
Q 008457 32 FWRDKYEREAKKYWDLFYKRHQDRFFK-----DRHYLDKEWGRYFS---GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVY 103 (564)
Q Consensus 32 ~~~~~y~~~a~~ywd~~~~~~~~~~~~-----~~~~~~~~~~~~l~---~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~ 103 (564)
...++|++.+...|+..|....-.... ........+...+. ..++.+|||||||+|.++..+++. +.+|+
T Consensus 12 ~v~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~--~~~v~ 89 (230)
T PRK07580 12 EVRTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR--GAKVV 89 (230)
T ss_pred hhhHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc--CCEEE
Confidence 456678887777888877542111110 01111122223332 256789999999999999999887 56799
Q ss_pred EEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEE
Q 008457 104 ACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYV 181 (564)
Q Consensus 104 ~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~l 181 (564)
|+|+|+.|++.|+++....+ .++.+..+|+. ..+++||+|++..+++|++..+...+++++.+.+++++.+
T Consensus 90 ~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 90 ASDISPQMVEEARERAPEAGLAGNITFEVGDLE-------SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred EEECCHHHHHHHHHHHHhcCCccCcEEEEcCch-------hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 99999999999998765433 37888888842 2357899999999999998778889999999987655544
Q ss_pred EEEecCCCchhhhhhcccccccccceee-cCCCceeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 182 LFRDYAIGDLAQERLTGKDQKISENFYV-RGDGTRAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 182 ii~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
.+. ..... ...... +. ..+. ........+++..++.++++++||++.......
T Consensus 163 ~~~--~~~~~--~~~~~~---l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 163 TFA--PYTPL--LALLHW---IG-GLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred EEC--CccHH--HHHHHH---hc-cccCCccCCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 332 11110 000000 10 1111 111223345789999999999999998775543
No 44
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.63 E-value=2.4e-15 Score=143.22 Aligned_cols=144 Identities=22% Similarity=0.329 Sum_probs=112.4
Q ss_pred CeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 77 ~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
.+|||||||+|.++..+++.+++++|+|+|+|+.+++.|+++.... ..++++...|+... ++ .++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~----~~-~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD----PF-PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC----CC-CCCCCEeehHH
Confidence 3799999999999999999888889999999999999999876542 35788998888543 22 35899999999
Q ss_pred cccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCc
Q 008457 155 VLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFD 234 (564)
Q Consensus 155 vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 234 (564)
+++|++ +...++++++++|||||.+++.++...... ... ......++.+.++|.++++++||+
T Consensus 76 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----~~~----------~~~~~~~~~s~~~~~~~l~~~Gf~ 138 (224)
T smart00828 76 VIHHIK--DKMDLFSNISRHLKDGGHLVLADFIANLLS-----AIE----------HEETTSYLVTREEWAELLARNNLR 138 (224)
T ss_pred HHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcccccCc-----ccc----------ccccccccCCHHHHHHHHHHCCCe
Confidence 999995 678999999999999999999876432100 000 011122356899999999999999
Q ss_pred EEEeeeee
Q 008457 235 VEELGLCC 242 (564)
Q Consensus 235 ~~~~~~~~ 242 (564)
+++.....
T Consensus 139 ~~~~~~~~ 146 (224)
T smart00828 139 VVEGVDAS 146 (224)
T ss_pred EEEeEECc
Confidence 98765443
No 45
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.63 E-value=1.9e-15 Score=133.84 Aligned_cols=193 Identities=18% Similarity=0.114 Sum_probs=136.6
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
..+...+......+|.|+|||+|..+..|+++.|+..++|+|.|++|++.|+++. .+++|..+|+.... +.
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~-----p~ 90 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWK-----PE 90 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcC-----CC
Confidence 3444555667889999999999999999999999999999999999999998875 47899999987543 56
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCC--CceeeccCHH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGD--GTRAFYFSND 222 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 222 (564)
...|+++++.+|++++ +-..+|.++...|.|||.|.+.-+..-+......+.....-...--...+ ..+....++.
T Consensus 91 ~~~dllfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a 168 (257)
T COG4106 91 QPTDLLFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPA 168 (257)
T ss_pred Cccchhhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHH
Confidence 7899999999999997 56789999999999999999975544333333332211110000000001 1233356888
Q ss_pred HHHHHHHhCCCcEEEeeeeeccccccccccccceeEEEEEEEecCCCCC
Q 008457 223 FLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGGATS 271 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 271 (564)
.+-++|...+-++......+......... ...|+..+.-+|--...
T Consensus 169 ~Yy~lLa~~~~rvDiW~T~Y~h~l~~a~a---IvdWvkgTgLrP~L~~L 214 (257)
T COG4106 169 AYYELLAPLACRVDIWHTTYYHQLPGADA---IVDWVKGTGLRPYLDRL 214 (257)
T ss_pred HHHHHhCcccceeeeeeeeccccCCCccc---hhhheeccccceecccc
Confidence 99999988877765544444433332332 35699888777774444
No 46
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.62 E-value=1.1e-14 Score=135.67 Aligned_cols=166 Identities=14% Similarity=0.143 Sum_probs=129.6
Q ss_pred CCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCC
Q 008457 351 RSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLA 429 (564)
Q Consensus 351 ~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~ 429 (564)
...|+..=-.+++|++|..- ...++|||||||+|.++.+++.+. ..+|+++|+++++.+++++|++.|.+. +
T Consensus 23 ~~~~~~~~~DaiLL~~~~~~----~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~---~ 95 (248)
T COG4123 23 DRCGFRYGTDAILLAAFAPV----PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE---E 95 (248)
T ss_pred CCCccccccHHHHHHhhccc----ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch---h
Confidence 34556666788999999743 248899999999998888888874 479999999999999999999999986 6
Q ss_pred ceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCC------------------ChHHHHHHHHHHhhccCCCCCCC
Q 008457 430 KLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE------------------AILPLFATAKELTASSNKSLRED 491 (564)
Q Consensus 430 ~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~------------------~~~~l~~~~~~ll~~~~g~~~~~ 491 (564)
++.+.+.|..+.. +.....+||+|+++...|... .++.++++...+| |++|
T Consensus 96 ri~v~~~Di~~~~-----~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~l-k~~G----- 164 (248)
T COG4123 96 RIQVIEADIKEFL-----KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLL-KPGG----- 164 (248)
T ss_pred ceeEehhhHHHhh-----hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHc-cCCC-----
Confidence 7787766644321 122344799999998777532 6899999999999 9998
Q ss_pred CCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCCCCCCCCcccccc
Q 008457 492 QQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIIS 539 (564)
Q Consensus 492 ~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 539 (564)
.+.++++..+. .++++.+.+.+|.+.++.-+.+..+..-+++.
T Consensus 165 ---~l~~V~r~erl--~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vL 207 (248)
T COG4123 165 ---RLAFVHRPERL--AEIIELLKSYNLEPKRIQFVYPKIGKAANRVL 207 (248)
T ss_pred ---EEEEEecHHHH--HHHHHHHHhcCCCceEEEEecCCCCCcceEEE
Confidence 87777665554 46899999999999999877666665555444
No 47
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.62 E-value=3.1e-15 Score=133.15 Aligned_cols=109 Identities=23% Similarity=0.398 Sum_probs=92.6
Q ss_pred CCCCeEEEEcCCccccHHHHH-HhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLI-AAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~-~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
..+.+|||+|||+|.++..++ +.+|+.+++|+|+|+.|++.|+++....+ .+++|.++|+.. ++..++ ++||+|+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~--l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED--LPQELE-EKFDIII 78 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC--GCGCSS-TTEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc--cccccC-CCeeEEE
Confidence 467899999999999999999 45788999999999999999999765333 479999999976 321133 7999999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+..+++|++ ++..+++++.++|++||.+++.++.
T Consensus 79 ~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999995 7789999999999999999998776
No 48
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.61 E-value=7.2e-15 Score=136.84 Aligned_cols=163 Identities=25% Similarity=0.253 Sum_probs=122.1
Q ss_pred cCCCccceechhHHHHHHHHhcCCC------CCC-----CCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHH
Q 008457 349 TCRSTGLMLWESAHLMAAVLARNPT------IVA-----GKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLA 416 (564)
Q Consensus 349 ~~~~~G~~~W~~~~~l~~~l~~~~~------~~~-----~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~ 416 (564)
........+|+++-.++.++..+.. ... ..+|||||+||| +++++++. ....|+.||. +..+..++
T Consensus 48 ~~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtg-lvG~~aa~~~~~~v~ltD~-~~~~~~L~ 125 (248)
T KOG2793|consen 48 LEQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTG-LVGILAALLLGAEVVLTDL-PKVVENLK 125 (248)
T ss_pred cccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCcc-HHHHHHHHHhcceeccCCc-hhhHHHHH
Confidence 3456778999999999999887543 122 346999999999 66666655 7889999999 78888888
Q ss_pred HHHHhcCCCCC--CCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCc
Q 008457 417 QNVTANLKPPF--LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQP 494 (564)
Q Consensus 417 ~n~~~n~~~~~--~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~ 494 (564)
.|...|+.... ...+.+..++|++........ +..||+|+++||+|+++..+.|+.+++.+| ..++
T Consensus 126 ~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~---~~~~DlilasDvvy~~~~~e~Lv~tla~ll-~~~~-------- 193 (248)
T KOG2793|consen 126 FNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL---PNPFDLILASDVVYEEESFEGLVKTLAFLL-AKDG-------- 193 (248)
T ss_pred HhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc---CCcccEEEEeeeeecCCcchhHHHHHHHHH-hcCC--------
Confidence 88777766432 137999999999886654332 222999999999999999999999999999 7654
Q ss_pred EEEEEEeeccCCh---hHHHHHHHHcCCeEEEEc
Q 008457 495 AFILCHIFRQVDE---PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 495 ~~~~~~~~r~~~~---~~~~~~~~~~g~~~~~~~ 525 (564)
.+++.++.|+... ..++.......+.+....
T Consensus 194 ~i~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~~~ 227 (248)
T KOG2793|consen 194 TIFLAYPLRRDAAWEIEVLLFKKDLKIFDVVQES 227 (248)
T ss_pred eEEEEEecccchHHHHHHHHhhhhhccceeeeEe
Confidence 8889988888532 223333344566666554
No 49
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.61 E-value=1.8e-14 Score=138.73 Aligned_cols=167 Identities=19% Similarity=0.233 Sum_probs=118.3
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccc--cCCCeeEEEecCCcccccCCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
...+...++.+|||+|||+|.++..+++.++ ..+++++|+++.+++.++++... ...++.+...|+... +++.
T Consensus 44 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~ 119 (239)
T PRK00216 44 IKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL----PFPD 119 (239)
T ss_pred HHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC----CCCC
Confidence 3344445678999999999999999998875 58999999999999999988654 235688888888643 2356
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhh-hhccc-----ccccccceeec-CC-----
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE-RLTGK-----DQKISENFYVR-GD----- 212 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~-~~----- 212 (564)
++||+|++..++++++ ++..+++++.++|+|||.+++.++........ ..... ..... .++.. ..
T Consensus 120 ~~~D~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 196 (239)
T PRK00216 120 NSFDAVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIG-KLISKNAEAYSYL 196 (239)
T ss_pred CCccEEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHH-HHHcCCcHHHHHH
Confidence 7899999999999995 67889999999999999999887654432110 00000 00000 00000 00
Q ss_pred -CceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 213 -GTRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 213 -~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
.....+++.+++.++|+++||+.+.....
T Consensus 197 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 226 (239)
T PRK00216 197 AESIRAFPDQEELAAMLEEAGFERVRYRNL 226 (239)
T ss_pred HHHHHhCCCHHHHHHHHHhCCCceeeeeee
Confidence 00122468899999999999998776553
No 50
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.60 E-value=2.5e-15 Score=131.28 Aligned_cols=131 Identities=23% Similarity=0.302 Sum_probs=105.0
Q ss_pred CCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCc
Q 008457 351 RSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAK 430 (564)
Q Consensus 351 ~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~ 430 (564)
...++..|.+++.||+|+..||+..++++|||+|+|+|..++.++..+++.|+++|++|-.+..++.|+..|+..
T Consensus 54 Ppfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~----- 128 (218)
T COG3897 54 PPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS----- 128 (218)
T ss_pred chHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce-----
Confidence 446789999999999999999999999999999999995555555567889999999999999999999999853
Q ss_pred eEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC
Q 008457 431 LITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV 505 (564)
Q Consensus 431 i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~ 505 (564)
+.+...|-.. .+..||+|+++|++|+...+..|+.+..++. ..+ ..+++..+.|..
T Consensus 129 i~~~~~d~~g----------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~-~~g--------~~vlvgdp~R~~ 184 (218)
T COG3897 129 ILFTHADLIG----------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLA-EAG--------AAVLVGDPGRAY 184 (218)
T ss_pred eEEeeccccC----------CCcceeEEEeeceecCchHHHHHHHHHHHHH-hCC--------CEEEEeCCCCCC
Confidence 4444433221 3568999999999999999999999666666 432 255566565644
No 51
>PRK08317 hypothetical protein; Provisional
Probab=99.60 E-value=8.9e-15 Score=141.00 Aligned_cols=163 Identities=24% Similarity=0.194 Sum_probs=116.3
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+.+...++.+|||+|||+|.++..+++.+ |..+++|+|+++.+++.++++......++.+...|+... ++++++
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~~~~ 87 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL----PFPDGS 87 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC----CCCCCC
Confidence 344555778999999999999999999886 678999999999999999887444456788988887543 346789
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhh-cccccccccceeecCCCceeeccCHHHHH
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL-TGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
||+|++..+++|++ ++..+++++.++|||||.+++.++.......... ......+...+.. .....+....+.
T Consensus 88 ~D~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 161 (241)
T PRK08317 88 FDAVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD----HFADPWLGRRLP 161 (241)
T ss_pred ceEEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh----cCCCCcHHHHHH
Confidence 99999999999995 6889999999999999999998754221100000 0000000001100 001123567899
Q ss_pred HHHHhCCCcEEEeee
Q 008457 226 SLFKENGFDVEELGL 240 (564)
Q Consensus 226 ~~l~~aGf~~~~~~~ 240 (564)
++++++||..+....
T Consensus 162 ~~l~~aGf~~~~~~~ 176 (241)
T PRK08317 162 GLFREAGLTDIEVEP 176 (241)
T ss_pred HHHHHcCCCceeEEE
Confidence 999999999876544
No 52
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.60 E-value=1.4e-14 Score=134.54 Aligned_cols=104 Identities=17% Similarity=0.291 Sum_probs=88.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..|++..++.+++|+|+|+.|++.|+++.. ++.+.++|+.. ++++++||+|+++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~-----~~~~~sfD~V~~~ 112 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD-----PFKDNFFDLVLTK 112 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC-----CCCCCCEEEEEEC
Confidence 46789999999999999999888778899999999999999988643 46677787753 4578899999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
.+++|++++++..+++++.+++ ++.+++.++..
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 9999998888999999999998 56888877643
No 53
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.60 E-value=2.1e-15 Score=124.20 Aligned_cols=97 Identities=27% Similarity=0.455 Sum_probs=81.4
Q ss_pred EEEEcCCccccHHHHHHhC---CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcc-
Q 008457 79 VLEVGCGAGNTIFPLIAAY---PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF- 154 (564)
Q Consensus 79 VLDiGcG~G~~~~~l~~~~---~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~- 154 (564)
|||+|||+|..+..+++.+ |..+++|+|+|++|++.++++....+.++++++.|+... +..+++||+|++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l----~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL----PFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH----HHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC----cccCCCeeEEEEcCC
Confidence 7999999999999999885 447999999999999999998865556899999999664 33677999999954
Q ss_pred cccCCChhHHHHHHHHHHhccCCCe
Q 008457 155 VLSAVSPEKMSLVLQNIKKVLKPTG 179 (564)
Q Consensus 155 vl~~~~~~~~~~~l~~~~r~LkpgG 179 (564)
+++|+++++...+++++.++|||||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 5999999999999999999999998
No 54
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.60 E-value=1.4e-14 Score=142.21 Aligned_cols=154 Identities=19% Similarity=0.247 Sum_probs=112.7
Q ss_pred CCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
..++.+|||+|||+|..+..+++. .+..+|+++|+++.+++.|+++....+ .++++..+|+... ++++++||+|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l----~~~~~~fD~V 150 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL----PVADNSVDVI 150 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC----CCCCCceeEE
Confidence 367899999999999988777765 455689999999999999998754332 4788888888542 4567899999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHh
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 230 (564)
+++.+++|.+ +...++++++++|||||++++.++............... .+ .+.....++.+++.+++++
T Consensus 151 i~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~e~~~~l~~ 220 (272)
T PRK11873 151 ISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAE-----LY---AGCVAGALQEEEYLAMLAE 220 (272)
T ss_pred EEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHH-----HH---hccccCCCCHHHHHHHHHH
Confidence 9999999985 667899999999999999999876533211111000000 00 0111123578999999999
Q ss_pred CCCcEEEeee
Q 008457 231 NGFDVEELGL 240 (564)
Q Consensus 231 aGf~~~~~~~ 240 (564)
+||..+.+..
T Consensus 221 aGf~~v~i~~ 230 (272)
T PRK11873 221 AGFVDITIQP 230 (272)
T ss_pred CCCCceEEEe
Confidence 9999876543
No 55
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.60 E-value=2.1e-14 Score=135.90 Aligned_cols=207 Identities=21% Similarity=0.210 Sum_probs=128.8
Q ss_pred cCCCCCCCCChhHHHHHHHHHhHh--HHH----HHHhhcc-ccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHH
Q 008457 21 IYPTPNTGVSPFWRDKYEREAKKY--WDL----FYKRHQD-RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93 (564)
Q Consensus 21 ~~~~~~~~~~~~~~~~y~~~a~~y--wd~----~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l 93 (564)
+.-....++++...+..+..++.. |.+ ++..+.+ +...+..| ..+...+....+.+|||||||+|.++..+
T Consensus 56 v~i~~~~~l~~~~~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW--~rl~p~l~~L~gk~VLDIGC~nGY~~frM 133 (315)
T PF08003_consen 56 VTIGSASDLSAEQRQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKW--DRLLPHLPDLKGKRVLDIGCNNGYYSFRM 133 (315)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHhhCCcccCCcccCCEeecccccccchH--HHHHhhhCCcCCCEEEEecCCCcHHHHHH
Confidence 334445566677767667766655 443 1111111 11112222 23334455578999999999999999999
Q ss_pred HHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHh
Q 008457 94 IAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKK 173 (564)
Q Consensus 94 ~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r 173 (564)
+.++ ...|+|+|+++-..-+.+......+....+....+.-++++ . .+.||+|+|..||.|. .++...|++++.
T Consensus 134 ~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp--~-~~~FDtVF~MGVLYHr--r~Pl~~L~~Lk~ 207 (315)
T PF08003_consen 134 LGRG-AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP--N-LGAFDTVFSMGVLYHR--RSPLDHLKQLKD 207 (315)
T ss_pred hhcC-CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc--c-cCCcCEEEEeeehhcc--CCHHHHHHHHHH
Confidence 9884 34699999999776554332111122223333333334442 2 5789999999999999 589999999999
Q ss_pred ccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 174 VLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 174 ~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
.|+|||.+++.+.........-+.. ...|.. -....+..+...+..+++++||+.+++....
T Consensus 208 ~L~~gGeLvLETlvi~g~~~~~L~P------~~rYa~-m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 208 SLRPGGELVLETLVIDGDENTVLVP------EDRYAK-MRNVWFIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred hhCCCCEEEEEEeeecCCCceEEcc------CCcccC-CCceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence 9999999999876654322211111 111111 1111223489999999999999988765543
No 56
>PRK05785 hypothetical protein; Provisional
Probab=99.60 E-value=1.4e-14 Score=137.02 Aligned_cols=131 Identities=19% Similarity=0.306 Sum_probs=94.1
Q ss_pred ChhHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccC--CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeC
Q 008457 30 SPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSG--AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDF 107 (564)
Q Consensus 30 ~~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~ 107 (564)
.....+.|+..|..| |..-.. ..+.....| ...+.+.+.. .++.+|||+|||||.++..+++.. +.+|+|+|+
T Consensus 8 ~~~v~~~f~~iA~~Y-D~~n~~--~s~g~~~~w-r~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~ 82 (226)
T PRK05785 8 WEELQEAYNKIPKAY-DRANRF--ISFNQDVRW-RAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDY 82 (226)
T ss_pred HHHHHHHHHhhhHHH-HHhhhh--ccCCCcHHH-HHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECC
Confidence 345667888888877 321100 011112122 1222222211 347899999999999999998886 579999999
Q ss_pred ChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCC
Q 008457 108 SPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPT 178 (564)
Q Consensus 108 s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lkpg 178 (564)
|++|++.|+.+. .++++|+.. .|+++++||+|++..+++|++ ++..++++++|+|||.
T Consensus 83 S~~Ml~~a~~~~-------~~~~~d~~~----lp~~d~sfD~v~~~~~l~~~~--d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 83 AENMLKMNLVAD-------DKVVGSFEA----LPFRDKSFDVVMSSFALHASD--NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CHHHHHHHHhcc-------ceEEechhh----CCCCCCCEEEEEecChhhccC--CHHHHHHHHHHHhcCc
Confidence 999999998752 346677743 267899999999999999984 7889999999999994
No 57
>PRK06922 hypothetical protein; Provisional
Probab=99.60 E-value=8.3e-15 Score=153.08 Aligned_cols=151 Identities=23% Similarity=0.324 Sum_probs=110.0
Q ss_pred HHHHHHhHhHHHHHHh--hccccccccchh------HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeC
Q 008457 36 KYEREAKKYWDLFYKR--HQDRFFKDRHYL------DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDF 107 (564)
Q Consensus 36 ~y~~~a~~ywd~~~~~--~~~~~~~~~~~~------~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~ 107 (564)
.|++.+..+||-+.+. ..++|....+++ ...........++.+|||+|||+|.++..+++.+|+.+|+|+|+
T Consensus 371 ~~~r~~~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDI 450 (677)
T PRK06922 371 MHARANVLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDI 450 (677)
T ss_pred HHHHHHhHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEEC
Confidence 5777777777765442 112222211111 11111122234689999999999999999998889999999999
Q ss_pred ChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCC-----------ChhHHHHHHHHHHhccC
Q 008457 108 SPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAV-----------SPEKMSLVLQNIKKVLK 176 (564)
Q Consensus 108 s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~-----------~~~~~~~~l~~~~r~Lk 176 (564)
|+.|++.|+++....+.++.++++|... ++..+++++||+|+++.++||+ +.+++..++++++++||
T Consensus 451 S~~MLe~Ararl~~~g~~ie~I~gDa~d--Lp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK 528 (677)
T PRK06922 451 SENVIDTLKKKKQNEGRSWNVIKGDAIN--LSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK 528 (677)
T ss_pred CHHHHHHHHHHhhhcCCCeEEEEcchHh--CccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcC
Confidence 9999999998765444567888888754 2223678899999999999875 23578899999999999
Q ss_pred CCeEEEEEecCC
Q 008457 177 PTGYVLFRDYAI 188 (564)
Q Consensus 177 pgG~lii~~~~~ 188 (564)
|||.+++.+...
T Consensus 529 PGGrLII~D~v~ 540 (677)
T PRK06922 529 PGGRIIIRDGIM 540 (677)
T ss_pred CCcEEEEEeCcc
Confidence 999999987543
No 58
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.60 E-value=1.5e-14 Score=128.54 Aligned_cols=160 Identities=19% Similarity=0.195 Sum_probs=114.6
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
++...-.++||+|||.|.++..|+.+ .-+++++|+|+.+++.|+++.... .+|++.+.|+.. ..|.++||+|
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~-~~V~~~~~dvp~-----~~P~~~FDLI 110 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGL-PHVEWIQADVPE-----FWPEGRFDLI 110 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT--------SS-EEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCC-CCeEEEECcCCC-----CCCCCCeeEE
Confidence 44466689999999999999999998 468999999999999999998743 689999999854 2478999999
Q ss_pred EEcccccCCCh-hHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHH
Q 008457 151 TMVFVLSAVSP-EKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFK 229 (564)
Q Consensus 151 ~~~~vl~~~~~-~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 229 (564)
++..+++++++ +++..++..+...|+|||.+++..+.. ....+ +. +.+..+.+..+|.
T Consensus 111 V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd--~~c~~---wg----------------h~~ga~tv~~~~~ 169 (201)
T PF05401_consen 111 VLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD--ANCRR---WG----------------HAAGAETVLEMLQ 169 (201)
T ss_dssp EEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H--HHHHH---TT-----------------S--HHHHHHHHH
T ss_pred EEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC--Ccccc---cC----------------cccchHHHHHHHH
Confidence 99999999974 789999999999999999999976531 11111 11 1246899999998
Q ss_pred hCCCcEEEeeeeeccccccccccccceeEEEEEEEecCC
Q 008457 230 ENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGG 268 (564)
Q Consensus 230 ~aGf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 268 (564)
+. |..++.........+ ..++-+.|++|..
T Consensus 170 ~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 199 (201)
T PF05401_consen 170 EH-LTEVERVECRGGSPN--------EDCLLARFRNPVS 199 (201)
T ss_dssp HH-SEEEEEEEEE-SSTT--------SEEEEEEEE--SS
T ss_pred HH-hhheeEEEEcCCCCC--------CceEeeeecCCcC
Confidence 86 666665555544444 5578888888864
No 59
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.60 E-value=9.1e-13 Score=132.38 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=109.2
Q ss_pred EEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEE
Q 008457 327 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVAT 405 (564)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~t 405 (564)
.+.+.+.+..+++....++|+...-+.| +++|+.+.....+.+|||||||+|.++..++... ..+|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~gVFs~~~LD~G----------trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~v 258 (378)
T PRK15001 189 TVSWKLEGTDWTIHNHANVFSRTGLDIG----------ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFV 258 (378)
T ss_pred eeEEEEcCceEEEEecCCccCCCCcChH----------HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEE
Confidence 4566677889999999999998888888 6667666443345799999999998888887765 4699999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC-----CChHHHHHHHHHH
Q 008457 406 DGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP-----EAILPLFATAKEL 480 (564)
Q Consensus 406 D~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~-----~~~~~l~~~~~~l 480 (564)
|.|+.+++.+++|++.|+... ..++.+..-|.. + ...+.+||+|+++.+++.. .....+++.+.++
T Consensus 259 D~S~~Av~~A~~N~~~n~~~~-~~~v~~~~~D~l-----~---~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~ 329 (378)
T PRK15001 259 DESPMAVASSRLNVETNMPEA-LDRCEFMINNAL-----S---GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRC 329 (378)
T ss_pred ECCHHHHHHHHHHHHHcCccc-CceEEEEEcccc-----c---cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHh
Confidence 999999999999999987531 123444322221 1 1234589999987654432 2356889999999
Q ss_pred hhccCCCCCCCCCcEEEEEEe
Q 008457 481 TASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 481 l~~~~g~~~~~~~~~~~~~~~ 501 (564)
| +|+| .+++...
T Consensus 330 L-kpGG--------~L~iV~n 341 (378)
T PRK15001 330 L-KING--------ELYIVAN 341 (378)
T ss_pred c-ccCC--------EEEEEEe
Confidence 9 9988 8888753
No 60
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.60 E-value=1.3e-14 Score=144.56 Aligned_cols=160 Identities=14% Similarity=0.213 Sum_probs=114.2
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
+.+...+..+|||||||+|.++..+++++|+.+++++|. +.+++.++++.... ..+++++.+|+.... ++ .
T Consensus 143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~----~~--~ 215 (306)
T TIGR02716 143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES----YP--E 215 (306)
T ss_pred HHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC----CC--C
Confidence 334446778999999999999999999999999999997 78999998776543 357899999986532 23 3
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHH
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 226 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (564)
+|+|++..++|+++++....+++++++.|+|||++++.++...+.....+......+...-. ......+.+.+++.+
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~~~ 292 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGM---PFSVLGFKEQARYKE 292 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHccc---ccccccCCCHHHHHH
Confidence 69999999999998777789999999999999999999875432211111000000000000 000111235799999
Q ss_pred HHHhCCCcEEEe
Q 008457 227 LFKENGFDVEEL 238 (564)
Q Consensus 227 ~l~~aGf~~~~~ 238 (564)
+|+++||+.+.+
T Consensus 293 ll~~aGf~~v~~ 304 (306)
T TIGR02716 293 ILESLGYKDVTM 304 (306)
T ss_pred HHHHcCCCeeEe
Confidence 999999987653
No 61
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.59 E-value=5.2e-16 Score=127.39 Aligned_cols=98 Identities=30% Similarity=0.479 Sum_probs=65.1
Q ss_pred EEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEcccccC
Q 008457 80 LEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSA 158 (564)
Q Consensus 80 LDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~ 158 (564)
||||||+|.++..+++.+|..+++|+|+|+.|++.|+++..... .+......+.. +.....+.++||+|++..++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVL--DLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SS--S---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecC--ChhhcccccccceehhhhhHhh
Confidence 79999999999999999999999999999999988888875433 23333333322 2211223369999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCeEE
Q 008457 159 VSPEKMSLVLQNIKKVLKPTGYV 181 (564)
Q Consensus 159 ~~~~~~~~~l~~~~r~LkpgG~l 181 (564)
+ +++..++++++++|||||.|
T Consensus 79 l--~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L--EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred h--hhHHHHHHHHHHHcCCCCCC
Confidence 9 68899999999999999986
No 62
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.59 E-value=1.2e-14 Score=138.58 Aligned_cols=195 Identities=19% Similarity=0.234 Sum_probs=125.9
Q ss_pred HHHHHHhHhHHHHHHhhccccccc--cchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHH
Q 008457 36 KYEREAKKYWDLFYKRHQDRFFKD--RHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVN 113 (564)
Q Consensus 36 ~y~~~a~~ywd~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~ 113 (564)
+|...+..||+...+......+.. ..++...+...-....+.+|||+|||+|.++..+++. +.+++++|+++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~ 81 (224)
T TIGR01983 4 KFSALAHEWWDPNGKFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIE 81 (224)
T ss_pred HHHHHHHHhcCCCCcHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHH
Confidence 477888999986321110011111 1222222221111245889999999999999988876 567999999999999
Q ss_pred HHHhcccccCC-CeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchh
Q 008457 114 LVMTHKDFTET-RVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLA 192 (564)
Q Consensus 114 ~a~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~ 192 (564)
.++.+...... ++.+...|+..... ...++||+|++..+++|+. ++..+++++.++|+|||.+++.+.......
T Consensus 82 ~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~ 156 (224)
T TIGR01983 82 VAKLHAKKDPLLKIEYRCTSVEDLAE---KGAKSFDVVTCMEVLEHVP--DPQAFIRACAQLLKPGGILFFSTINRTPKS 156 (224)
T ss_pred HHHHHHHHcCCCceEEEeCCHHHhhc---CCCCCccEEEehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEEecCCCchH
Confidence 99887654443 57888777653221 1247899999999999994 778899999999999999998876543211
Q ss_pred hh-hhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 193 QE-RLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 193 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
.. .... ......+..........+++..++.++++++||++++..
T Consensus 157 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 157 YLLAIVG--AEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred HHHHHHh--hhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 10 0000 000000001111122235689999999999999998754
No 63
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.59 E-value=2.8e-14 Score=135.85 Aligned_cols=168 Identities=20% Similarity=0.288 Sum_probs=118.6
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCC-cEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
+.+.+...++.+|||+|||+|.++..+++.++. .+++++|+++.+++.++++.. ...++.+..+|+... +++.+
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~----~~~~~ 105 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEAL----PFEDN 105 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcC----CCCCC
Confidence 344444467899999999999999999988765 689999999999999988765 345788888888643 34567
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhh-hh----hcccccccccceeecCC-------C
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQ-ER----LTGKDQKISENFYVRGD-------G 213 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~-------~ 213 (564)
+||+|++..+++|++ ++..+++++.++|+|||.+++.+........ .. ............+.... .
T Consensus 106 ~~D~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (223)
T TIGR01934 106 SFDAVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPE 183 (223)
T ss_pred cEEEEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHH
Confidence 899999999999985 7889999999999999999997765432110 00 00000000000000000 0
Q ss_pred ceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 214 TRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 214 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
....+++.++|.++|+++||+.+.....
T Consensus 184 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 211 (223)
T TIGR01934 184 SIRAFPSQEELAAMLKEAGFEEVRYRSL 211 (223)
T ss_pred HHHhCCCHHHHHHHHHHcCCccceeeee
Confidence 0122468899999999999998766543
No 64
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.58 E-value=2.1e-14 Score=123.55 Aligned_cols=127 Identities=23% Similarity=0.348 Sum_probs=100.7
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
..+|||+|||+|.+...|++..-...++|+|+|+.+++.|+......+ ..|+|.+.|+.+.. +..++||+|+--
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~----~~~~qfdlvlDK 143 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD----FLSGQFDLVLDK 143 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc----ccccceeEEeec
Confidence 349999999999999999998434469999999999999988765443 45999999998753 367889999986
Q ss_pred ccccCCC------hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHH
Q 008457 154 FVLSAVS------PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSL 227 (564)
Q Consensus 154 ~vl~~~~------~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (564)
..+..++ ...+..++..+.++|+|||+++|..= .||.+++.+.
T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC-------------------------------N~T~dELv~~ 192 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC-------------------------------NFTKDELVEE 192 (227)
T ss_pred CceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec-------------------------------CccHHHHHHH
Confidence 6665442 22345678889999999999999632 2589999999
Q ss_pred HHhCCCcEEE
Q 008457 228 FKENGFDVEE 237 (564)
Q Consensus 228 l~~aGf~~~~ 237 (564)
++..||+...
T Consensus 193 f~~~~f~~~~ 202 (227)
T KOG1271|consen 193 FENFNFEYLS 202 (227)
T ss_pred HhcCCeEEEE
Confidence 9999987654
No 65
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.57 E-value=2.4e-14 Score=137.91 Aligned_cols=142 Identities=26% Similarity=0.376 Sum_probs=111.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
..+.+|||+|||+|.++..+++.++..+++++|+++.++..++++.. .++.++.+|+... ++++++||+|++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~----~~~~~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKL----PLEDSSFDLIVSN 105 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhC----CCCCCceeEEEEh
Confidence 34579999999999999999999888899999999999999988765 3678888888643 4467899999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.++||+. ++..++.++.++|+|||.+++.++.........-. ... ....+.+.+++.+++.++ |
T Consensus 106 ~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~l~~~-f 169 (240)
T TIGR02072 106 LALQWCD--DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQS--FGQ-----------HGLRYLSLDELKALLKNS-F 169 (240)
T ss_pred hhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHH--HHH-----------hccCCCCHHHHHHHHHHh-c
Confidence 9999994 68889999999999999999988766543221100 000 112245889999999988 8
Q ss_pred cEEEe
Q 008457 234 DVEEL 238 (564)
Q Consensus 234 ~~~~~ 238 (564)
..+..
T Consensus 170 ~~~~~ 174 (240)
T TIGR02072 170 ELLTL 174 (240)
T ss_pred CCcEE
Confidence 76554
No 66
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=6.4e-13 Score=126.31 Aligned_cols=136 Identities=18% Similarity=0.203 Sum_probs=107.2
Q ss_pred CceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHH
Q 008457 334 DRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIAL 412 (564)
Q Consensus 334 ~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l 412 (564)
+.++++...+++|+...-+.| ++.|+++.....+.+|||||||.|.+++.++... ..+|+++|.|..++
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~G----------S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av 195 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKG----------SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAV 195 (300)
T ss_pred cCceEEEeCCCCCcCCCcChH----------HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHH
Confidence 778899999999999999999 8888887666666699999999999998888876 46999999999999
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCC-----hHHHHHHHHHHhhccCCC
Q 008457 413 DLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEA-----ILPLFATAKELTASSNKS 487 (564)
Q Consensus 413 ~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-----~~~l~~~~~~ll~~~~g~ 487 (564)
+.+++|+..|+... . .+..-+ ..+ +.. ++||+||++..+..... ...++....+.| +++|
T Consensus 196 ~~ar~Nl~~N~~~~---~-~v~~s~-----~~~---~v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L-~~gG- 260 (300)
T COG2813 196 ESARKNLAANGVEN---T-EVWASN-----LYE---PVE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHL-KPGG- 260 (300)
T ss_pred HHHHHhHHHcCCCc---c-EEEEec-----ccc---ccc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhh-ccCC-
Confidence 99999999998752 1 222111 111 112 38999999988876433 337999999999 9988
Q ss_pred CCCCCCcEEEEEEe
Q 008457 488 LREDQQPAFILCHI 501 (564)
Q Consensus 488 ~~~~~~~~~~~~~~ 501 (564)
.+.+...
T Consensus 261 -------eL~iVan 267 (300)
T COG2813 261 -------ELWIVAN 267 (300)
T ss_pred -------EEEEEEc
Confidence 6666655
No 67
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.56 E-value=6.2e-14 Score=126.88 Aligned_cols=136 Identities=18% Similarity=0.218 Sum_probs=102.9
Q ss_pred EEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCC-EEEEEcCChhHHHHH
Q 008457 337 FKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLL 415 (564)
Q Consensus 337 ~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~-~v~~tD~~~~~l~~~ 415 (564)
+++++.+++|+....+ .++.+|++++..+ .+.+|||||||+|.++..++..... +|+++|+++.+++.+
T Consensus 2 ~~~~~~~gvFs~~~~d------~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a 71 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLD------AGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELA 71 (170)
T ss_dssp EEEEEETTSTTTTSHH------HHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHH
T ss_pred EEEEECCCeeCCCCCC------HHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 5666666665433322 3477888888766 6779999999999888888887665 899999999999999
Q ss_pred HHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCC-----ChHHHHHHHHHHhhccCCCCCC
Q 008457 416 AQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE-----AILPLFATAKELTASSNKSLRE 490 (564)
Q Consensus 416 ~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~~l~~~~~~ll~~~~g~~~~ 490 (564)
++|+..|+.. . +.+..-|+.+. ....+||+|+++.+++... ....+++...++| +|+|
T Consensus 72 ~~n~~~n~~~---~-v~~~~~d~~~~--------~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~L-k~~G---- 134 (170)
T PF05175_consen 72 KRNAERNGLE---N-VEVVQSDLFEA--------LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYL-KPGG---- 134 (170)
T ss_dssp HHHHHHTTCT---T-EEEEESSTTTT--------CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHE-EEEE----
T ss_pred HHHHHhcCcc---c-ccccccccccc--------ccccceeEEEEccchhcccccchhhHHHHHHHHHHhc-cCCC----
Confidence 9999999874 2 77776666432 2357999999998866544 3788999999999 9988
Q ss_pred CCCcEEEEEEeec
Q 008457 491 DQQPAFILCHIFR 503 (564)
Q Consensus 491 ~~~~~~~~~~~~r 503 (564)
.++++....
T Consensus 135 ----~l~lv~~~~ 143 (170)
T PF05175_consen 135 ----RLFLVINSH 143 (170)
T ss_dssp ----EEEEEEETT
T ss_pred ----EEEEEeecC
Confidence 887766543
No 68
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.55 E-value=2.2e-13 Score=126.72 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=122.6
Q ss_pred hHhHHHHHHhhcccc-ccccc-hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcc
Q 008457 42 KKYWDLFYKRHQDRF-FKDRH-YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK 119 (564)
Q Consensus 42 ~~ywd~~~~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~ 119 (564)
.++|+..+......| ....+ .+...|.+ +...++.+||+.|||.|..+..|+++ |.+|+|+|+|+.+++.+.+..
T Consensus 9 ~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~-l~~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~ 85 (226)
T PRK13256 9 NQYWLDRWQNDDVGFCQESPNEFLVKHFSK-LNINDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQN 85 (226)
T ss_pred HHHHHHHHhcCCCCCccCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHc
Confidence 346776665554444 22223 33344433 33346789999999999999999998 889999999999999986521
Q ss_pred -------------cccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 120 -------------DFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 120 -------------~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
.....++++.++|+.+.... +-..+.||+|+-..+|++++++...++.+.+.++|+|||.+++..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 86 TINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCCcceecccccceeccCceEEEEccCcCCCcc-ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 11245789999999764311 0123689999999999999999999999999999999999988765
Q ss_pred CCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 187 AIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
..... .+..++..+.+++++++.. +|.+..+.
T Consensus 165 ~~~~~--------------------~~GPPf~v~~~e~~~lf~~-~~~i~~l~ 196 (226)
T PRK13256 165 EHDKK--------------------SQTPPYSVTQAELIKNFSA-KIKFELID 196 (226)
T ss_pred ecCCC--------------------CCCCCCcCCHHHHHHhccC-CceEEEee
Confidence 32210 1122233578999999964 45555443
No 69
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.53 E-value=2.2e-13 Score=138.60 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=111.0
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCcee
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
+.+...++.+|||||||+|.++..+++.+ +++|+|+|+|+++++.|+++.. ...+++...|... .+++||
T Consensus 161 ~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~-------l~~~fD 230 (383)
T PRK11705 161 RKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRD-------LNGQFD 230 (383)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhh-------cCCCCC
Confidence 34445788999999999999999998875 6899999999999999998874 2357777777642 146899
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHH
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLF 228 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 228 (564)
+|++..+++|++..++..+++++.++|||||.+++.++....... .....+.. +....+ ...+.+++...+
T Consensus 231 ~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~----~~~~~i~~--yifp~g---~lps~~~i~~~~ 301 (383)
T PRK11705 231 RIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDT----NVDPWINK--YIFPNG---CLPSVRQIAQAS 301 (383)
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCC----CCCCCcee--eecCCC---cCCCHHHHHHHH
Confidence 999999999998777889999999999999999998765443110 00111111 111111 233678887776
Q ss_pred HhCCCcEEEeee
Q 008457 229 KENGFDVEELGL 240 (564)
Q Consensus 229 ~~aGf~~~~~~~ 240 (564)
+ .||.+.++..
T Consensus 302 ~-~~~~v~d~~~ 312 (383)
T PRK11705 302 E-GLFVMEDWHN 312 (383)
T ss_pred H-CCcEEEEEec
Confidence 6 5898776543
No 70
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.53 E-value=5.9e-13 Score=131.84 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=87.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcc-cccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISD-DLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~-~~~~~~~~~~fD~ 149 (564)
.++.+|||+|||+|..+..|++..+ +.+|+++|+|++|++.|+++.... ..++.++++|+... .+..+...+...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 4568999999999999999998865 588999999999999998876432 24577789998652 2211111123445
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+++...++++++++...+|+++++.|+|||.+++..
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 555678999998899999999999999999999744
No 71
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.53 E-value=1e-13 Score=128.59 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=108.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++.. +..++|+|+|+++++.++.+ +++++++|+... + .++++++||+|+++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~-l-~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEG-L-EAFPDKSFDYVILS 82 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhc-c-cccCCCCcCEEEEh
Confidence 467899999999999998887663 56789999999999998753 367788887531 1 13567899999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhh-h-hcc-cccccccceeecCCCceeeccCHHHHHHHHHh
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE-R-LTG-KDQKISENFYVRGDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 230 (564)
.+++|++ ++..+++++.+.+++ +++..++....... . +.. ........-+...+..+..+++.+++.+++++
T Consensus 83 ~~l~~~~--d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~ 157 (194)
T TIGR02081 83 QTLQATR--NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGE 157 (194)
T ss_pred hHhHcCc--CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHH
Confidence 9999994 788899999887654 44443333221111 0 000 00000000011112233447799999999999
Q ss_pred CCCcEEEeeeeecccccc
Q 008457 231 NGFDVEELGLCCKQVENR 248 (564)
Q Consensus 231 aGf~~~~~~~~~~~~~~~ 248 (564)
+||++++.........++
T Consensus 158 ~Gf~v~~~~~~~~~~~~~ 175 (194)
T TIGR02081 158 LNLRILDRAAFDVDGRGG 175 (194)
T ss_pred CCCEEEEEEEeccccccc
Confidence 999999877775544443
No 72
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.52 E-value=2.9e-13 Score=123.32 Aligned_cols=126 Identities=25% Similarity=0.217 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
++.+|||+|||+|..+..++...++.+|+++|+++.|++.|+++....+ .++++.++|+.. + +. .++||+|+++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~--~--~~-~~~fDlV~~~ 119 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEE--F--GQ-EEKFDVVTSR 119 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhh--C--CC-CCCccEEEEc
Confidence 4899999999999999999988888999999999999999998765444 358999999854 2 22 5689999997
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.. .++..++++++++|||||.+++..... ...++..+.+..|+
T Consensus 120 ~~------~~~~~~l~~~~~~LkpGG~lv~~~~~~-------------------------------~~~~l~~~~~~~~~ 162 (187)
T PRK00107 120 AV------ASLSDLVELCLPLLKPGGRFLALKGRD-------------------------------PEEEIAELPKALGG 162 (187)
T ss_pred cc------cCHHHHHHHHHHhcCCCeEEEEEeCCC-------------------------------hHHHHHHHHHhcCc
Confidence 52 246779999999999999999864221 25567777778899
Q ss_pred cEEEeeeee
Q 008457 234 DVEELGLCC 242 (564)
Q Consensus 234 ~~~~~~~~~ 242 (564)
.+.......
T Consensus 163 ~~~~~~~~~ 171 (187)
T PRK00107 163 KVEEVIELT 171 (187)
T ss_pred eEeeeEEEe
Confidence 887654433
No 73
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.52 E-value=5.9e-14 Score=127.05 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=102.4
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCC-eeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETR-VSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
...+.||.|+|.|+.+..++... --+|-.+|+.+..++.|++.......+ .++.+..+.+.. | +.++||+|++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~---P-~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT---P-EEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--------TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc---C-CCCcEeEEEeh
Confidence 57899999999999998775543 457999999999999999876643333 456666664322 1 34799999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
+++.|++++++..+|+++...|+|+|.+++.+-..... ...+-..++... -+.+.++++|++||+
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~-------------~~~~D~~DsSvT--Rs~~~~~~lF~~AGl 194 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG-------------FDEFDEEDSSVT--RSDEHFRELFKQAGL 194 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS-------------EEEEETTTTEEE--EEHHHHHHHHHHCT-
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC-------------CcccCCccCeee--cCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999976443211 012222233222 368999999999999
Q ss_pred cEEEeeeee
Q 008457 234 DVEELGLCC 242 (564)
Q Consensus 234 ~~~~~~~~~ 242 (564)
+++....+.
T Consensus 195 ~~v~~~~Q~ 203 (218)
T PF05891_consen 195 RLVKEEKQK 203 (218)
T ss_dssp EEEEEEE-T
T ss_pred EEEEecccc
Confidence 999876653
No 74
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.51 E-value=2.5e-13 Score=120.57 Aligned_cols=152 Identities=22% Similarity=0.276 Sum_probs=115.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||.|.+...|... .+++.+|+|++++.+..+.++ .+.++++|+... + ..|++++||.|+++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~g-L-~~f~d~sFD~VIls 82 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEG-L-ADFPDQSFDYVILS 82 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHh-H-hhCCCCCccEEehH
Confidence 68999999999999999998876 489999999999998888776 356888998653 3 26899999999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhc------ccccccccceeecCCCceeeccCHHHHHHH
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLT------GKDQKISENFYVRGDGTRAFYFSNDFLTSL 227 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (564)
.+|.++ ..+..+|+++.|+ |...+++.++...+...... .....+.-.|| +....+++|..+++++
T Consensus 83 qtLQ~~--~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WY---dTPNih~~Ti~DFe~l 154 (193)
T PF07021_consen 83 QTLQAV--RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWY---DTPNIHLCTIKDFEDL 154 (193)
T ss_pred hHHHhH--hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCccc---CCCCcccccHHHHHHH
Confidence 999999 5888999998766 55777887776554322111 11222222233 4444557899999999
Q ss_pred HHhCCCcEEEeeeee
Q 008457 228 FKENGFDVEELGLCC 242 (564)
Q Consensus 228 l~~aGf~~~~~~~~~ 242 (564)
.++.|+++++.....
T Consensus 155 c~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 155 CRELGIRIEERVFLD 169 (193)
T ss_pred HHHCCCEEEEEEEEc
Confidence 999999998765543
No 75
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.50 E-value=1e-13 Score=128.99 Aligned_cols=139 Identities=18% Similarity=0.235 Sum_probs=104.4
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecC-CcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDL-ISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~-~~~~~~~~~ 142 (564)
..|.+++.. ++.+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.|+++....+ .++.++++|+ .. +...+
T Consensus 31 ~~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--l~~~~ 107 (202)
T PRK00121 31 LDWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEV--LLDMF 107 (202)
T ss_pred CCHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHH--HHHHc
Confidence 345555554 7889999999999999999988888899999999999999998764333 5789999998 33 22125
Q ss_pred CCCceeEEEEcccccCCC------hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCcee
Q 008457 143 SPSSIDIVTMVFVLSAVS------PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRA 216 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~------~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (564)
++++||+|++++...+.. ......+++++.++|||||.+++......
T Consensus 108 ~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~--------------------------- 160 (202)
T PRK00121 108 PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG--------------------------- 160 (202)
T ss_pred CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH---------------------------
Confidence 678899999976543321 11246799999999999999998643210
Q ss_pred eccCHHHHHHHHHhCCCcEE
Q 008457 217 FYFSNDFLTSLFKENGFDVE 236 (564)
Q Consensus 217 ~~~~~~~l~~~l~~aGf~~~ 236 (564)
-..++.+.+++.|+...
T Consensus 161 ---~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 161 ---YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred ---HHHHHHHHHHhCccccc
Confidence 14567788888888654
No 76
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.49 E-value=6.4e-13 Score=121.63 Aligned_cols=130 Identities=18% Similarity=0.270 Sum_probs=102.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++.++ +|+++|+|+.+++.++++....+.++++..+|+... ..++||+|+++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~------~~~~fD~Vi~n 89 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG------VRGKFDVILFN 89 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc------cCCcccEEEEC
Confidence 5668999999999999999998853 899999999999999988765555678888887532 24589999999
Q ss_pred ccccCCChh-------------------HHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCc
Q 008457 154 FVLSAVSPE-------------------KMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGT 214 (564)
Q Consensus 154 ~vl~~~~~~-------------------~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (564)
..+++.+.. ....+++++.++|||||.+++......
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------------- 144 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------------- 144 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-------------------------
Confidence 887766421 146789999999999999988653321
Q ss_pred eeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 215 RAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 215 ~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
...++.+.+++.||+...+...
T Consensus 145 -----~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 145 -----GEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred -----ChHHHHHHHHhCCCeEEEEEEe
Confidence 2577789999999988765443
No 77
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.49 E-value=7.7e-13 Score=120.46 Aligned_cols=100 Identities=23% Similarity=0.283 Sum_probs=82.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||+|||+|..+..++...++.+|+++|.|+.|++.++++....+ .+++++++|+... + ..++||+|++
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~----~-~~~~fD~I~s 115 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF----Q-HEEQFDVITS 115 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc----c-ccCCccEEEe
Confidence 35889999999999999999888778899999999999999887765433 4689999998642 1 3578999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+. ++ ++..+++.++++|+|||.+++.
T Consensus 116 ~~-~~-----~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 116 RA-LA-----SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hh-hh-----CHHHHHHHHHHhcCCCCEEEEE
Confidence 76 33 3456788899999999999975
No 78
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.49 E-value=1.5e-13 Score=133.09 Aligned_cols=107 Identities=21% Similarity=0.325 Sum_probs=86.4
Q ss_pred CCCCeEEEEcCCcccc----HHHHHHhCC-----CcEEEEEeCChHHHHHHHhcccc-----------------------
Q 008457 74 AGRKDVLEVGCGAGNT----IFPLIAAYP-----DVFVYACDFSPRAVNLVMTHKDF----------------------- 121 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~----~~~l~~~~~-----~~~v~~iD~s~~~l~~a~~~~~~----------------------- 121 (564)
.++.+|||+|||+|.- +..+++..+ +.+|+|+|+|+.|++.|++..-.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 3568999999999974 445555443 57899999999999999985310
Q ss_pred -----cCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 122 -----TETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 122 -----~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
...++.|.+.|+... +++.++||+|+|.++++|++.++...+++++++.|+|||+|++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~----~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAE----SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCC----CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 013688889998653 23578999999999999998778889999999999999999985
No 79
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.49 E-value=8.4e-13 Score=123.29 Aligned_cols=174 Identities=21% Similarity=0.300 Sum_probs=119.0
Q ss_pred hHhHHHHHHhhccccccc--cchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcc
Q 008457 42 KKYWDLFYKRHQDRFFKD--RHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK 119 (564)
Q Consensus 42 ~~ywd~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~ 119 (564)
..+|+..|......+-.. ...+...+.. +...++.+||..|||.|..+..|+++ |.+|+|+|+|+.+++.+.+..
T Consensus 3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~ 79 (218)
T PF05724_consen 3 PEFWEERWQEGQTPWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEEN 79 (218)
T ss_dssp HHHHHHHHHTT--TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHh
Confidence 467887776665554322 2233333333 44577889999999999999999998 899999999999999984321
Q ss_pred c-------------ccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 120 D-------------FTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 120 ~-------------~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
. ....+|++.++|+..... -..++||+|+-..+|+.++++...++.+.+.++|+|||.+++.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~---~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 80 NLEPTVTSVGGFKRYQAGRITIYCGDFFELPP---EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp TTEEECTTCTTEEEETTSSEEEEES-TTTGGG---SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred ccCCCcccccceeeecCCceEEEEcccccCCh---hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 1 112468899999976432 123579999999999999999999999999999999999555433
Q ss_pred CCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 187 AIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
..... .....++..+.+++.++|. .+|++......
T Consensus 157 ~~~~~-------------------~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~ 191 (218)
T PF05724_consen 157 EYPQG-------------------EMEGPPFSVTEEEVRELFG-PGFEIEELEEE 191 (218)
T ss_dssp ES-CS-------------------CSSSSS----HHHHHHHHT-TTEEEEEEEEE
T ss_pred EcCCc-------------------CCCCcCCCCCHHHHHHHhc-CCcEEEEEecc
Confidence 22110 0112233458999999997 78998877663
No 80
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.48 E-value=7.7e-13 Score=122.02 Aligned_cols=130 Identities=13% Similarity=0.171 Sum_probs=100.7
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
...+...++.+|||+|||+|.++..+++.+|+.+|+++|+++.+++.|+++..... .++++..+|+.. ++ .++
T Consensus 24 ~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-----~~-~~~ 97 (187)
T PRK08287 24 LSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-----EL-PGK 97 (187)
T ss_pred HHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-----hc-CcC
Confidence 34455567899999999999999999998888899999999999999988764332 468888877631 22 357
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHH
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 226 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (564)
||+|++....++ +..++..+.+.|+|||.+++..... -+.+++.+
T Consensus 98 ~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~------------------------------~~~~~~~~ 142 (187)
T PRK08287 98 ADAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILL------------------------------ENLHSALA 142 (187)
T ss_pred CCEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEecH------------------------------hhHHHHHH
Confidence 999999776543 3568899999999999998853321 13567788
Q ss_pred HHHhCCCcEEEe
Q 008457 227 LFKENGFDVEEL 238 (564)
Q Consensus 227 ~l~~aGf~~~~~ 238 (564)
++++.||..++.
T Consensus 143 ~l~~~g~~~~~~ 154 (187)
T PRK08287 143 HLEKCGVSELDC 154 (187)
T ss_pred HHHHCCCCcceE
Confidence 999999976654
No 81
>PRK04266 fibrillarin; Provisional
Probab=99.47 E-value=1.2e-12 Score=123.13 Aligned_cols=145 Identities=18% Similarity=0.268 Sum_probs=99.0
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeE
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
.+...++.+|||+|||+|.++..+++..+..+|+|+|+++.|++.+.++... ..++.++.+|+.......+++ ++||+
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-~~nv~~i~~D~~~~~~~~~l~-~~~D~ 144 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-RKNIIPILADARKPERYAHVV-EKVDV 144 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-cCCcEEEECCCCCcchhhhcc-ccCCE
Confidence 4566789999999999999999999986566899999999999877655442 257888888886421111223 56999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHH
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFK 229 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 229 (564)
|++.... +.....++++++++|||||.+++..+...- .+. ..... . .++..++++
T Consensus 145 i~~d~~~----p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~-------d~~-----------~~~~~-~--~~~~~~~l~ 199 (226)
T PRK04266 145 IYQDVAQ----PNQAEIAIDNAEFFLKDGGYLLLAIKARSI-------DVT-----------KDPKE-I--FKEEIRKLE 199 (226)
T ss_pred EEECCCC----hhHHHHHHHHHHHhcCCCcEEEEEEecccc-------cCc-----------CCHHH-H--HHHHHHHHH
Confidence 9864221 123456789999999999999995332100 000 00000 1 134459999
Q ss_pred hCCCcEEEeeee
Q 008457 230 ENGFDVEELGLC 241 (564)
Q Consensus 230 ~aGf~~~~~~~~ 241 (564)
++||++++....
T Consensus 200 ~aGF~~i~~~~l 211 (226)
T PRK04266 200 EGGFEILEVVDL 211 (226)
T ss_pred HcCCeEEEEEcC
Confidence 999999876543
No 82
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.47 E-value=5.4e-11 Score=119.04 Aligned_cols=134 Identities=18% Similarity=0.151 Sum_probs=94.2
Q ss_pred EEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHH
Q 008457 337 FKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLL 415 (564)
Q Consensus 337 ~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~ 415 (564)
+.+...++.++....+.| ++.++.+.......+|||||||+|.++..++...+ .+|+++|+|+.+++.+
T Consensus 167 l~i~~~pgvFs~~~lD~g----------t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A 236 (342)
T PRK09489 167 LTVKTLPGVFSRDGLDVG----------SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESS 236 (342)
T ss_pred EEEEeCCCCCCCCCCCHH----------HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 566667777766555666 44444432223445899999999988888887654 5899999999999999
Q ss_pred HHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeC-----CCChHHHHHHHHHHhhccCCCCCC
Q 008457 416 AQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-----PEAILPLFATAKELTASSNKSLRE 490 (564)
Q Consensus 416 ~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-----~~~~~~l~~~~~~ll~~~~g~~~~ 490 (564)
++|+..|+.. .++...|... . ..++||+|+++.+++. ......+++.+.+.| +|+|
T Consensus 237 ~~nl~~n~l~-----~~~~~~D~~~--------~-~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~L-kpgG---- 297 (342)
T PRK09489 237 RATLAANGLE-----GEVFASNVFS--------D-IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHL-NSGG---- 297 (342)
T ss_pred HHHHHHcCCC-----CEEEEccccc--------c-cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhc-CcCC----
Confidence 9999998863 1222222111 1 2468999998765543 234689999999999 9988
Q ss_pred CCCcEEEEEEeec
Q 008457 491 DQQPAFILCHIFR 503 (564)
Q Consensus 491 ~~~~~~~~~~~~r 503 (564)
.+++.....
T Consensus 298 ----~L~iVan~~ 306 (342)
T PRK09489 298 ----ELRIVANAF 306 (342)
T ss_pred ----EEEEEEeCC
Confidence 777765543
No 83
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.47 E-value=1.5e-12 Score=119.18 Aligned_cols=138 Identities=21% Similarity=0.189 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
+..|.+++.. .++.+|||||||+|.++..++..+. +|+++|+++.+++.+++|+..|+. .+.+...|+.+
T Consensus 8 ~~~l~~~l~~----~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~ 77 (179)
T TIGR00537 8 SLLLEANLRE----LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-----GLDVVMTDLFK 77 (179)
T ss_pred HHHHHHHHHh----cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEccccc
Confidence 4555555532 3567899999999988777777665 899999999999999999988764 24555555533
Q ss_pred CccchhhhhhcCCCccEEEEeceeeCCC---------------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 008457 441 RDHIEAIKEENNEGFEVILGTDVSYIPE---------------------AILPLFATAKELTASSNKSLREDQQPAFILC 499 (564)
Q Consensus 441 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~ 499 (564)
. ..++||+|+++.+.+... ....+++.+.++| +|+| .++++
T Consensus 78 ~---------~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-k~gG--------~~~~~ 139 (179)
T TIGR00537 78 G---------VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEIL-KEGG--------RVQLI 139 (179)
T ss_pred c---------cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhh-CCCC--------EEEEE
Confidence 2 234899999876554322 1467899999999 9988 77776
Q ss_pred EeeccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 500 HIFRQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 500 ~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
....+ ....+++.+.+.||.++.+...
T Consensus 140 ~~~~~-~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 140 QSSLN-GEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred EeccC-ChHHHHHHHHhCCCeEEEEEEe
Confidence 54433 2447889999999999998744
No 84
>PLN02244 tocopherol O-methyltransferase
Probab=99.46 E-value=2.3e-12 Score=129.81 Aligned_cols=146 Identities=11% Similarity=0.100 Sum_probs=109.7
Q ss_pred HHHHHHHhcCCCC-----CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 362 HLMAAVLARNPTI-----VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 362 ~~l~~~l~~~~~~-----~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
..+.+.+.....+ .++.+|||||||+|.++..++.....+|+++|+++.+++.+++++..++.. .++.+...
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~---~~v~~~~~ 175 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS---DKVSFQVA 175 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEEc
Confidence 3445545543333 477899999999998888777766779999999999999999998887653 45666665
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc------------
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------ 504 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~------------ 504 (564)
|..+. ++++++||+|++..++.+..+...+++.+.++| +|+| .++++....+
T Consensus 176 D~~~~-------~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvL-kpGG--------~lvi~~~~~~~~~~~~~~l~~~ 239 (340)
T PLN02244 176 DALNQ-------PFEDGQFDLVWSMESGEHMPDKRKFVQELARVA-APGG--------RIIIVTWCHRDLEPGETSLKPD 239 (340)
T ss_pred CcccC-------CCCCCCccEEEECCchhccCCHHHHHHHHHHHc-CCCc--------EEEEEEecccccccccccCCHH
Confidence 55432 345679999999999999999999999999999 9988 6666532110
Q ss_pred -----------------CChhHHHHHHHHcCCeEEEEcC
Q 008457 505 -----------------VDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 505 -----------------~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
.+...+.+.+++.||..+++..
T Consensus 240 ~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d 278 (340)
T PLN02244 240 EQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTED 278 (340)
T ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeee
Confidence 0234666778889999887753
No 85
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.45 E-value=4.1e-12 Score=126.51 Aligned_cols=169 Identities=18% Similarity=0.227 Sum_probs=114.4
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
-|++....... ..+.....+++|||||||+|.++..++..++..|+++|.++.++...+......+. ..++.+...
T Consensus 104 ew~s~~k~~~l-~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~---~~~i~~~~~ 179 (322)
T PRK15068 104 EWRSDWKWDRV-LPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN---DQRAHLLPL 179 (322)
T ss_pred eehHHhHHHHH-HHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC---CCCeEEEeC
Confidence 46555443322 33333457899999999999888888777777899999999888654433222111 134666555
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--------------
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------- 502 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-------------- 502 (564)
+..+. +. +++||+|++..++|+..+...+++.+.+.| +|+| .+++....
T Consensus 180 d~e~l-------p~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~L-kpGG--------~lvl~~~~i~~~~~~~l~p~~~ 242 (322)
T PRK15068 180 GIEQL-------PA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQL-VPGG--------ELVLETLVIDGDENTVLVPGDR 242 (322)
T ss_pred CHHHC-------CC-cCCcCEEEECChhhccCCHHHHHHHHHHhc-CCCc--------EEEEEEEEecCCCccccCchhH
Confidence 44322 22 568999999999999999999999999999 9988 66554211
Q ss_pred ----cc----CChhHHHHHHHHcCCeEEEEcCCCCCCCCccccccccccCCCC
Q 008457 503 ----RQ----VDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGH 547 (564)
Q Consensus 503 ----r~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (564)
++ .+...+..++.++||+.+++......... .+....|+....+
T Consensus 243 y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~t~~~-eqr~t~w~~~~sl 294 (322)
T PRK15068 243 YAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSVTTTE-EQRKTEWMTTESL 294 (322)
T ss_pred HhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCCCCcc-ccccccCcccCcH
Confidence 00 13346789999999999999876554433 3334457753333
No 86
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=9.7e-13 Score=125.99 Aligned_cols=135 Identities=27% Similarity=0.297 Sum_probs=102.8
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
..++.+.. .++++|||+|||+|.|++.++..++.+|+++|++|.+++.++.|+..|+... .+.+. +....
T Consensus 153 L~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~---~~~~~---~~~~~-- 222 (300)
T COG2264 153 LEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL---LVQAK---GFLLL-- 222 (300)
T ss_pred HHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch---hhhcc---cccch--
Confidence 44544432 2889999999999988888888899999999999999999999999999853 11111 11111
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEE
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
.....++||+|+|+ ++ .+.+..|..-+.+++ +|+| .++++.....+. ..+.+.+.+.||.+.++
T Consensus 223 ---~~~~~~~~DvIVAN-IL--A~vl~~La~~~~~~l-kpgg--------~lIlSGIl~~q~-~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 223 ---EVPENGPFDVIVAN-IL--AEVLVELAPDIKRLL-KPGG--------RLILSGILEDQA-ESVAEAYEQAGFEVVEV 286 (300)
T ss_pred ---hhcccCcccEEEeh-hh--HHHHHHHHHHHHHHc-CCCc--------eEEEEeehHhHH-HHHHHHHHhCCCeEeEE
Confidence 11233599999864 32 333668899999999 9988 999999887764 47888888999999998
Q ss_pred c
Q 008457 525 W 525 (564)
Q Consensus 525 ~ 525 (564)
.
T Consensus 287 ~ 287 (300)
T COG2264 287 L 287 (300)
T ss_pred E
Confidence 7
No 87
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.44 E-value=9.3e-13 Score=127.76 Aligned_cols=137 Identities=24% Similarity=0.364 Sum_probs=100.9
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
+.+....++|... ..++++|||+|||||.|++.++..++++|+++|++|.+++.+++|+..|+.. .++.+.
T Consensus 146 ~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~---~~~~v~---- 216 (295)
T PF06325_consen 146 PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE---DRIEVS---- 216 (295)
T ss_dssp HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T---TCEEES----
T ss_pred HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC---eeEEEE----
Confidence 4555556666655 3478899999999998888888889999999999999999999999999986 344442
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcC
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG 518 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g 518 (564)
... .....+||+|+|+ ++.+. +..|+..+.++| +|+| .++++....... +.+.+.+.+ |
T Consensus 217 ~~~-------~~~~~~~dlvvAN-I~~~v--L~~l~~~~~~~l-~~~G--------~lIlSGIl~~~~-~~v~~a~~~-g 275 (295)
T PF06325_consen 217 LSE-------DLVEGKFDLVVAN-ILADV--LLELAPDIASLL-KPGG--------YLILSGILEEQE-DEVIEAYKQ-G 275 (295)
T ss_dssp CTS-------CTCCS-EEEEEEE-S-HHH--HHHHHHHCHHHE-EEEE--------EEEEEEEEGGGH-HHHHHHHHT-T
T ss_pred Eec-------ccccccCCEEEEC-CCHHH--HHHHHHHHHHhh-CCCC--------EEEEccccHHHH-HHHHHHHHC-C
Confidence 111 1234799999854 33332 567888889999 9988 888887777544 467777765 9
Q ss_pred CeEEEEc
Q 008457 519 FRLVDKW 525 (564)
Q Consensus 519 ~~~~~~~ 525 (564)
|++.+..
T Consensus 276 ~~~~~~~ 282 (295)
T PF06325_consen 276 FELVEER 282 (295)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 9998765
No 88
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.44 E-value=4.3e-12 Score=124.77 Aligned_cols=170 Identities=16% Similarity=0.207 Sum_probs=114.8
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
-|.+.......+.. ....++++|||+|||+|.+...++..++..|+++|.|+.++..++........ ..++.+...
T Consensus 103 e~~s~~~~~~~l~~-l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~---~~~v~~~~~ 178 (314)
T TIGR00452 103 EWRSDIKWDRVLPH-LSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN---DKRAILEPL 178 (314)
T ss_pred HHHHHHHHHHHHHh-cCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc---CCCeEEEEC
Confidence 46655554444433 34468899999999999887777777777899999999988765432221111 133444444
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------c
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------R 503 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-------------r 503 (564)
+..+ +. ...+||+|++..++|+..+....++.++++| +|+| .+++.... |
T Consensus 179 ~ie~------lp--~~~~FD~V~s~gvL~H~~dp~~~L~el~r~L-kpGG--------~Lvletl~i~g~~~~~l~p~~r 241 (314)
T TIGR00452 179 GIEQ------LH--ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQL-VIKG--------ELVLETLVIDGDLNTVLVPKDR 241 (314)
T ss_pred CHHH------CC--CCCCcCEEEEcchhhccCCHHHHHHHHHHhc-CCCC--------EEEEEEEEecCccccccCchHH
Confidence 3321 11 1248999999999999999999999999999 9988 66654221 0
Q ss_pred ---------cCChhHHHHHHHHcCCeEEEEcCCCCCCCCccccccccccCCCCc
Q 008457 504 ---------QVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHE 548 (564)
Q Consensus 504 ---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (564)
..+...+...++++||+.+++..+......-++ ...|+..+.+.
T Consensus 242 y~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~tt~~eqr-~t~w~~~~sl~ 294 (314)
T TIGR00452 242 YAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLKTTPEEQR-KTDWILGESLE 294 (314)
T ss_pred HHhccccccCCCHHHHHHHHHHCCCeEEEEEeccCCCHHHhh-hhhhhhccchH
Confidence 012345678889999999999877655544344 33588655444
No 89
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.43 E-value=2.6e-12 Score=126.97 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=100.7
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||||||+|.++..++. .+.+|+++|.++++++.++.+...+... .++.+...+- +.+ +..+++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~---~~i~~~~~da------e~l-~~~~~~ 198 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVT---STIEYLCTTA------EKL-ADEGRK 198 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcc---cceeEEecCH------HHh-hhccCC
Confidence 4778999999999977666654 4568999999999999999887665432 2344443221 111 234568
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----------------------------cCC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR----------------------------QVD 506 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r----------------------------~~~ 506 (564)
||+|++.+++++..+...+++.+.++| +|+| .++++...+ ..+
T Consensus 199 FD~Vi~~~vLeHv~d~~~~L~~l~r~L-kPGG--------~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~t 269 (322)
T PLN02396 199 FDAVLSLEVIEHVANPAEFCKSLSALT-IPNG--------ATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVT 269 (322)
T ss_pred CCEEEEhhHHHhcCCHHHHHHHHHHHc-CCCc--------EEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCC
Confidence 999999999999999999999999999 9988 777765322 123
Q ss_pred hhHHHHHHHHcCCeEEEEcCC
Q 008457 507 EPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 507 ~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..++.+.+++.||++.++...
T Consensus 270 p~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 270 PEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred HHHHHHHHHHcCCeEEEEeee
Confidence 457888889999999999644
No 90
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.43 E-value=2.1e-12 Score=110.67 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=86.1
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+.+...++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.++++..... .+++++..|+... . +...++
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~ 88 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA-L--EDSLPE 88 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc-C--hhhcCC
Confidence 34444456789999999999999999998878899999999999999988754332 4678887776431 1 112358
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
||+|++..... ....+++++++.|+|||.+++...
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEEec
Confidence 99999976543 345899999999999999998643
No 91
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.40 E-value=1.9e-12 Score=115.20 Aligned_cols=137 Identities=17% Similarity=0.235 Sum_probs=97.4
Q ss_pred HHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCC--CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHH
Q 008457 36 KYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAG--RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVN 113 (564)
Q Consensus 36 ~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~ 113 (564)
+++..|.+|-.. .+...-+..+.....+++..+. +.-|||||||+|.-+..|... +..++|+|+|+.|++
T Consensus 15 Ynd~eA~kYt~n------sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~ 86 (270)
T KOG1541|consen 15 YNDTEAPKYTQN------SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLE 86 (270)
T ss_pred echhhhhhcccc------ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHH
Confidence 455667776221 1111222334444445554444 788999999999988887766 788999999999999
Q ss_pred HHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCC---------ChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 114 LVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAV---------SPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 114 ~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~---------~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.|.++-- .-.++.+|+- + ..||+.++||.|++..++.|+ |...+..++..++.+|++|+..++.
T Consensus 87 ~a~~~e~----egdlil~DMG-~--GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 87 QAVEREL----EGDLILCDMG-E--GLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred HHHHhhh----hcCeeeeecC-C--CCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 9987421 1356778875 3 348899999999997766654 3445667899999999999999986
Q ss_pred ecC
Q 008457 185 DYA 187 (564)
Q Consensus 185 ~~~ 187 (564)
.+.
T Consensus 160 fYp 162 (270)
T KOG1541|consen 160 FYP 162 (270)
T ss_pred ecc
Confidence 543
No 92
>PLN03075 nicotianamine synthase; Provisional
Probab=99.39 E-value=2.4e-12 Score=123.82 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=88.1
Q ss_pred CCCCeEEEEcCCccccHHHHH--HhCCCcEEEEEeCChHHHHHHHhcccc-c--CCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLI--AAYPDVFVYACDFSPRAVNLVMTHKDF-T--ETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~--~~~~~~~v~~iD~s~~~l~~a~~~~~~-~--~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
.++.+|+|||||.|.++..+. ...|+.+++|+|.++++++.|++.... . ..+++|.++|+.+.. -..+.||
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~----~~l~~FD 197 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT----ESLKEYD 197 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc----cccCCcC
Confidence 488999999999886654433 357889999999999999999998742 2 367999999986521 1246899
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|++. +++++..++...+++++.+.|+|||.+++..
T Consensus 198 lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 198 VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99999 8898876789999999999999999999864
No 93
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.38 E-value=1.2e-12 Score=119.61 Aligned_cols=109 Identities=17% Similarity=0.281 Sum_probs=87.8
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++++|||+|||-|.++.-+|..+ ++|+++|.++++|+.++.....++.. ++|... ..+.+.. ..++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~----------i~y~~~-~~edl~~-~~~~ 124 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVN----------IDYRQA-TVEDLAS-AGGQ 124 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhcccc----------ccchhh-hHHHHHh-cCCC
Confidence 589999999999997776666665 78999999999999999999888763 223222 1222211 2369
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV 505 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~ 505 (564)
||+|++.+++.|..+.+.+++.+.+++ ||+| .++++...|..
T Consensus 125 FDvV~cmEVlEHv~dp~~~~~~c~~lv-kP~G--------~lf~STinrt~ 166 (243)
T COG2227 125 FDVVTCMEVLEHVPDPESFLRACAKLV-KPGG--------ILFLSTINRTL 166 (243)
T ss_pred ccEEEEhhHHHccCCHHHHHHHHHHHc-CCCc--------EEEEeccccCH
Confidence 999999999999999999999999999 9998 88888877543
No 94
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.37 E-value=9.9e-12 Score=120.60 Aligned_cols=140 Identities=14% Similarity=0.181 Sum_probs=102.7
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
+..+.....+.++.+|||||||+|..+..++.....+|+++|+++.+++.++++... ..++.+...|..+.
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~--- 111 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK--- 111 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC---
Confidence 444555455668889999999999777766665566999999999999999987543 13466665554322
Q ss_pred hhhhhhcCCCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc------------------
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------------ 504 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~------------------ 504 (564)
++++++||+|++.+++++.. +...+++.+.++| +|+| .++++.....
T Consensus 112 ----~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~L-kPGG--------~lvi~d~~~~~~~~~~~~~~~~~~~~~~ 178 (263)
T PTZ00098 112 ----DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWL-KPNG--------ILLITDYCADKIENWDEEFKAYIKKRKY 178 (263)
T ss_pred ----CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHc-CCCc--------EEEEEEeccccccCcHHHHHHHHHhcCC
Confidence 34567999999999887754 7899999999999 9988 7766543211
Q ss_pred --CChhHHHHHHHHcCCeEEEEcC
Q 008457 505 --VDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 505 --~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
.+...+.+.++++||.+++...
T Consensus 179 ~~~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 179 TLIPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred CCCCHHHHHHHHHHCCCCeeeEEe
Confidence 1224566778889999887753
No 95
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.37 E-value=3.4e-12 Score=115.53 Aligned_cols=111 Identities=22% Similarity=0.354 Sum_probs=88.4
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCC-eeEEEecCCcccccCCCCCCce
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETR-VSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~~~f 147 (564)
+.+...+..+|||+|||+|..+..+++.+|..+|+++|+++.+++.++++....... ++++..|+.. ++++++|
T Consensus 25 ~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-----~~~~~~f 99 (170)
T PF05175_consen 25 DNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-----ALPDGKF 99 (170)
T ss_dssp HHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-----TCCTTCE
T ss_pred HHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-----cccccce
Confidence 333334788999999999999999999988889999999999999999887655533 8888888754 3457899
Q ss_pred eEEEEcccccCCCh---hHHHHHHHHHHhccCCCeEEEEE
Q 008457 148 DIVTMVFVLSAVSP---EKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 148 D~V~~~~vl~~~~~---~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
|+|+++--++.-.. +-...++++..+.|||||.+++.
T Consensus 100 D~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 100 DLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp EEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 99999876655432 34688999999999999999774
No 96
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.36 E-value=1.4e-11 Score=119.15 Aligned_cols=114 Identities=14% Similarity=0.223 Sum_probs=89.9
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
.|.....+++.+...+.+|.+|||||||.|+++..++.+.+.+|+++.+|++-.+.+++.+...++. +++.+...||
T Consensus 45 ~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~---~~v~v~~~D~ 121 (273)
T PF02353_consen 45 EAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE---DRVEVRLQDY 121 (273)
T ss_dssp HHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS---STEEEEES-G
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEEeec
Confidence 4455677888888888899999999999999999999886779999999999999999999988875 6788887777
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
.+. +.+||.|++.+++.+. ..++.+++.+.++| +|+|
T Consensus 122 ~~~----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~L-kpgG 160 (273)
T PF02353_consen 122 RDL----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLL-KPGG 160 (273)
T ss_dssp GG-------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHS-ETTE
T ss_pred ccc----------CCCCCEEEEEechhhcChhHHHHHHHHHHHhc-CCCc
Confidence 532 2399999999999986 68899999999999 9988
No 97
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=1.4e-11 Score=119.41 Aligned_cols=133 Identities=15% Similarity=0.087 Sum_probs=100.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..++.. +.+|+++|+++++++.+++++...+.. .++.+...+..+ +.+..+++|
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~---~~v~~~~~d~~~------l~~~~~~~f 113 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVS---DNMQFIHCAAQD------IAQHLETPV 113 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCc---cceEEEEcCHHH------HhhhcCCCC
Confidence 5679999999999877777765 568999999999999999999877653 345554433321 222345789
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------------------
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-------------------------------- 503 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-------------------------------- 503 (564)
|+|++..++++..+...+++.+.++| +|+| .++++....
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 184 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVL-RPGG--------ALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDY 184 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHc-CCCe--------EEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCC
Confidence 99999999999889999999999999 9988 666543221
Q ss_pred cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..+...+.+.++++||+++++..+
T Consensus 185 ~~~~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 185 PLDPEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred CCCHHHHHHHHHHCCCeEeeeeeE
Confidence 112346778888899999877644
No 98
>PRK14968 putative methyltransferase; Provisional
Probab=99.36 E-value=2.2e-11 Score=112.53 Aligned_cols=130 Identities=21% Similarity=0.304 Sum_probs=98.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCC-C--eeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-R--VSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~-~--i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++...... + +.++..|+.. +++..+||+|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-----PFRGDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-----cccccCceEE
Confidence 57789999999999999999988 78999999999999999877643332 2 7788888754 2345589999
Q ss_pred EEcccccCC-------------------ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecC
Q 008457 151 TMVFVLSAV-------------------SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRG 211 (564)
Q Consensus 151 ~~~~vl~~~-------------------~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (564)
+++..+.+. +...+..+++++.++|||||.+++.....
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------------- 151 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------------- 151 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc-----------------------
Confidence 987654331 12345678999999999999988753211
Q ss_pred CCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 212 DGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 212 ~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
...+.+.++++++||++.....
T Consensus 152 -------~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 152 -------TGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred -------CCHHHHHHHHHHCCCeeeeeee
Confidence 1457788999999998775443
No 99
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.35 E-value=7.4e-12 Score=125.84 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=88.9
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC----CCeeEEEecCCcccccCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE----TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~----~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+.++...+.+|||+|||+|.++..+++.+|..+|+++|.|+.+++.|+++..... .++++...|... .++
T Consensus 221 L~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-----~~~ 295 (378)
T PRK15001 221 MQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-----GVE 295 (378)
T ss_pred HHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-----cCC
Confidence 34454444579999999999999999999999999999999999999998764332 357888777643 234
Q ss_pred CCceeEEEEcccccC---CChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 144 PSSIDIVTMVFVLSA---VSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~---~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.++||+|+|+-.+|. ++.+...++++++++.|+|||.+++.
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 568999999866653 34445678999999999999999986
No 100
>PRK14967 putative methyltransferase; Provisional
Probab=99.35 E-value=3.3e-11 Score=114.32 Aligned_cols=164 Identities=20% Similarity=0.273 Sum_probs=110.9
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
.+..+++++... ...++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|+..++. .+.+...|+.
T Consensus 21 ds~~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-----~~~~~~~d~~ 94 (223)
T PRK14967 21 DTQLLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-----DVDVRRGDWA 94 (223)
T ss_pred cHHHHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-----eeEEEECchh
Confidence 456777777653 2446789999999999877777666556999999999999999999988764 2455555543
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCCC----------------------ChHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIPE----------------------AILPLFATAKELTASSNKSLREDQQPAFI 497 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~----------------------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~ 497 (564)
+. +...+||+|+++.. |... .+..+++.+.++| +++| .++
T Consensus 95 ~~--------~~~~~fD~Vi~npP-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~L-k~gG--------~l~ 156 (223)
T PRK14967 95 RA--------VEFRPFDVVVSNPP-YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALL-APGG--------SLL 156 (223)
T ss_pred hh--------ccCCCeeEEEECCC-CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhc-CCCc--------EEE
Confidence 21 23468999997643 4322 1456788899999 9988 777
Q ss_pred EEEeeccCChhHHHHHHHHcCCeEEEEcCCCCCCCCccccccccccCCCCc
Q 008457 498 LCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHE 548 (564)
Q Consensus 498 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (564)
+.+.... ....+++.+++.||.++......-+-.+.......|+.....-
T Consensus 157 ~~~~~~~-~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (223)
T PRK14967 157 LVQSELS-GVERTLTRLSEAGLDAEVVASQWIPFGPVLRARAAWLERRGLL 206 (223)
T ss_pred EEEeccc-CHHHHHHHHHHCCCCeEEEEeeccCccHHHHHHHHHHHHcCCC
Confidence 6644442 2346788888899988877654444333232233444443333
No 101
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.35 E-value=2.1e-11 Score=111.21 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=95.0
Q ss_pred CCCeEEEeCCcccHHHHHHHh-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||+|||+|.++..++. ....+|+++|.++++++.+++|++.++.. .+++...+..+. .. .++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~----~i~~~~~d~~~~-------~~-~~~ 112 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK----NVTVVHGRAEEF-------GQ-EEK 112 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC----CEEEEeccHhhC-------CC-CCC
Confidence 478999999999977776665 34579999999999999999999998863 366665554321 11 458
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
||+|++.. ...++.+++.+.++| +|+| .+++..... ....+.+...+.|+.+..+...
T Consensus 113 fDlV~~~~----~~~~~~~l~~~~~~L-kpGG--------~lv~~~~~~--~~~~l~~~~~~~~~~~~~~~~~ 170 (187)
T PRK00107 113 FDVVTSRA----VASLSDLVELCLPLL-KPGG--------RFLALKGRD--PEEEIAELPKALGGKVEEVIEL 170 (187)
T ss_pred ccEEEEcc----ccCHHHHHHHHHHhc-CCCe--------EEEEEeCCC--hHHHHHHHHHhcCceEeeeEEE
Confidence 99999764 256889999999999 9988 777664333 3346777778889999888643
No 102
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.35 E-value=2e-11 Score=118.49 Aligned_cols=131 Identities=23% Similarity=0.365 Sum_probs=99.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..+.+|||+|||+|.++..++...|+.+++|+|+++.+++.|+.+....+ .++.+.++|+.. +++.++||+|++
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-----~~~~~~fD~Vi~ 160 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-----PLPGGKFDLIVS 160 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-----cCcCCceeEEEE
Confidence 34569999999999999999998888899999999999999988765433 358899988854 235689999999
Q ss_pred ccccc------CCCh------------------hHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccccccccccee
Q 008457 153 VFVLS------AVSP------------------EKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFY 208 (564)
Q Consensus 153 ~~vl~------~~~~------------------~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (564)
+--+. ++.. .....+++++.++|+|||.+++...
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------------------- 218 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------------------- 218 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------
Confidence 54322 1211 1134788999999999999988421
Q ss_pred ecCCCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 209 VRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
+...+++.++|+++||+.+.+..
T Consensus 219 ---------~~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 219 ---------YDQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred ---------ccHHHHHHHHHHhCCCCceEEEe
Confidence 01467788999999998776543
No 103
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.34 E-value=9.9e-12 Score=121.65 Aligned_cols=101 Identities=21% Similarity=0.358 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCC---cEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPD---VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~---~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.+..+|||+|||+|.++..+++..+. .+++|+|+|+.|++.|+++. .++.+.++|+... |+++++||+|
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~l----p~~~~sfD~I 155 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRL----PFADQSLDAI 155 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccC----CCcCCceeEE
Confidence 45678999999999999999887542 47999999999999998764 3578888887542 5678899999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL 191 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~ 191 (564)
++...- ..++++.|+|||||.+++..+.....
T Consensus 156 ~~~~~~---------~~~~e~~rvLkpgG~li~~~p~~~~l 187 (272)
T PRK11088 156 IRIYAP---------CKAEELARVVKPGGIVITVTPGPRHL 187 (272)
T ss_pred EEecCC---------CCHHHHHhhccCCCEEEEEeCCCcch
Confidence 986541 13678999999999999987765443
No 104
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.34 E-value=2.6e-11 Score=117.00 Aligned_cols=133 Identities=21% Similarity=0.319 Sum_probs=95.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++....+....+ .+ +..+.+||+|+++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~---~~-------~~~~~~fD~Vvan 186 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELNGVELNV---YL-------PQGDLKADVIVAN 186 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCceE---EE-------ccCCCCcCEEEEc
Confidence 578999999999999988877664 336999999999999999886543221111 11 0112279999997
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
... +....+++++.++|||||.++++.... ...+++.+.+++.||
T Consensus 187 i~~-----~~~~~l~~~~~~~LkpgG~lilsgi~~------------------------------~~~~~v~~~l~~~Gf 231 (250)
T PRK00517 187 ILA-----NPLLELAPDLARLLKPGGRLILSGILE------------------------------EQADEVLEAYEEAGF 231 (250)
T ss_pred CcH-----HHHHHHHHHHHHhcCCCcEEEEEECcH------------------------------hhHHHHHHHHHHCCC
Confidence 532 345678999999999999999975432 135678899999999
Q ss_pred cEEEeeeeeccccccccccccceeEEEEEEEec
Q 008457 234 DVEELGLCCKQVENRARELVMNRRWVQAVFCSS 266 (564)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (564)
.+...... ..|+...++|+
T Consensus 232 ~~~~~~~~--------------~~W~~~~~~~~ 250 (250)
T PRK00517 232 TLDEVLER--------------GEWVALVGKKK 250 (250)
T ss_pred EEEEEEEe--------------CCEEEEEEEeC
Confidence 98764332 34777776653
No 105
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.34 E-value=4.5e-12 Score=117.39 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
....+|||||||+|.++..+++.+|+.+++|+|+++.+++.|+++....+ .++.++++|+.... ...++++++|.|++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-DKFFPDGSLSKVFL 93 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH-HhhCCCCceeEEEE
Confidence 45679999999999999999999999999999999999999987754332 47999999985421 11235678999999
Q ss_pred cccccCCChh------HHHHHHHHHHhccCCCeEEEEEec
Q 008457 153 VFVLSAVSPE------KMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 153 ~~vl~~~~~~------~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+....|.... ....+++++.++|||||.+++.+.
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 8755443210 124689999999999999998753
No 106
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.34 E-value=6.2e-12 Score=105.65 Aligned_cols=106 Identities=15% Similarity=0.229 Sum_probs=81.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||||||+|.++..++.. ...+|+++|+|+++++.+++|+...... .++.+..-|+ .. . .....+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~i~~~~~d~-~~-~-----~~~~~~ 70 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS---DRITFVQGDA-EF-D-----PDFLEP 70 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT---TTEEEEESCC-HG-G-----TTTSSC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEECcc-cc-C-----cccCCC
Confidence 5789999999999888777773 6778999999999999999999665553 6788887776 11 1 112357
Q ss_pred ccEEEEec-eee---CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 455 FEVILGTD-VSY---IPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 455 fD~Ii~~d-~~y---~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
||+|++.. +.. .......+++.+.++| +|+| ++++..
T Consensus 71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG--------~lvi~~ 111 (112)
T PF12847_consen 71 FDLVICSGFTLHFLLPLDERRRVLERIRRLL-KPGG--------RLVINT 111 (112)
T ss_dssp EEEEEECSGSGGGCCHHHHHHHHHHHHHHHE-EEEE--------EEEEEE
T ss_pred CCEEEECCCccccccchhHHHHHHHHHHHhc-CCCc--------EEEEEE
Confidence 99999888 222 1245678899999999 9988 777764
No 107
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.33 E-value=9.8e-12 Score=124.37 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=89.9
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCce
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+.+......+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.|+++....+...+++..|+.. . ..++|
T Consensus 189 l~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~-----~-~~~~f 262 (342)
T PRK09489 189 LSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS-----D-IKGRF 262 (342)
T ss_pred HHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc-----c-cCCCc
Confidence 34444445678999999999999999999888899999999999999998776554455666677642 1 35789
Q ss_pred eEEEEcccccCC---ChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 148 DIVTMVFVLSAV---SPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 148 D~V~~~~vl~~~---~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
|+|+++-.+|+. .......+++++.+.|||||.+++..
T Consensus 263 DlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 263 DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 999999888863 23567899999999999999998853
No 108
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=3.1e-11 Score=114.71 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=99.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
++...-.+.++....+.+|.+|||||||.|+++..++...+.+|+++++|++..+.+++.+..-++. .++++...||
T Consensus 55 eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~---~~v~v~l~d~ 131 (283)
T COG2230 55 EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE---DNVEVRLQDY 131 (283)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC---cccEEEeccc
Confidence 4555566778888888999999999999999999999988889999999999999999999988875 5788988888
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
.+. .++||-|++.+++.+. +.++.+++.+.++| +|+|
T Consensus 132 rd~----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L-~~~G 170 (283)
T COG2230 132 RDF----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALL-KPGG 170 (283)
T ss_pred ccc----------ccccceeeehhhHHHhCcccHHHHHHHHHhhc-CCCc
Confidence 754 2469999999998774 45999999999999 9988
No 109
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.33 E-value=2.2e-11 Score=110.94 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=92.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||+|||+|.++..++... ..+|+++|.++.+++.+++|+..++. .++.+...|..+. ...++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~----~~i~~i~~d~~~~--------~~~~~ 109 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL----NNVEIVNGRAEDF--------QHEEQ 109 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC----CCeEEEecchhhc--------cccCC
Confidence 58899999999997777766544 46899999999999999999988765 3466666655431 12468
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh-hHHHHHHHHcCCeEEEEcCC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-PSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~g~~~~~~~~~ 527 (564)
||+|++.- ...++.+++.+.++| +|+| .+++......... ..+.+.|.-.||++.++-+.
T Consensus 110 fD~I~s~~----~~~~~~~~~~~~~~L-kpgG--------~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 110 FDVITSRA----LASLNVLLELTLNLL-KVGG--------YFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred ccEEEehh----hhCHHHHHHHHHHhc-CCCC--------EEEEEcCCCcHHHHHHHHHhhhhcCceEeecccc
Confidence 99988643 345788899999999 9988 7776643333222 23445555589999988644
No 110
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.33 E-value=4e-11 Score=115.70 Aligned_cols=136 Identities=24% Similarity=0.335 Sum_probs=99.8
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
..+.+..+.+++... ..++.+|||+|||+|.++..++..++.+|+++|+|+.+++.+++|+..|+.. ..+.+.
T Consensus 102 ~h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~---~~~~~~-- 174 (250)
T PRK00517 102 THPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE---LNVYLP-- 174 (250)
T ss_pred CCHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC---ceEEEc--
Confidence 355666666666654 2478899999999997777666666668999999999999999999998763 222211
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHH
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ 516 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 516 (564)
. .+.+||+|+++ .. ...+..+++.+.++| +|+| .++++..... ....+.+.+.+
T Consensus 175 ---~----------~~~~fD~Vvan-i~--~~~~~~l~~~~~~~L-kpgG--------~lilsgi~~~-~~~~v~~~l~~ 228 (250)
T PRK00517 175 ---Q----------GDLKADVIVAN-IL--ANPLLELAPDLARLL-KPGG--------RLILSGILEE-QADEVLEAYEE 228 (250)
T ss_pred ---c----------CCCCcCEEEEc-Cc--HHHHHHHHHHHHHhc-CCCc--------EEEEEECcHh-hHHHHHHHHHH
Confidence 0 01279999864 21 234677889999999 9988 8888755443 23467888889
Q ss_pred cCCeEEEEc
Q 008457 517 CGFRLVDKW 525 (564)
Q Consensus 517 ~g~~~~~~~ 525 (564)
.||.+.++.
T Consensus 229 ~Gf~~~~~~ 237 (250)
T PRK00517 229 AGFTLDEVL 237 (250)
T ss_pred CCCEEEEEE
Confidence 999998876
No 111
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.33 E-value=1e-11 Score=124.98 Aligned_cols=357 Identities=16% Similarity=0.173 Sum_probs=178.3
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEE---eCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYAC---DFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~i---D~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.-..+||+|||+|.++..|.++ ++.+..+ |..+..++.|-++. +....+-+... .+||++++||+|.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleRG------vpa~~~~~~s~--rLPfp~~~fDmvH 186 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALERG------VPAMIGVLGSQ--RLPFPSNAFDMVH 186 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhcC------cchhhhhhccc--cccCCccchhhhh
Confidence 3456899999999999999998 5444333 33334555555442 12222222222 3489999999999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
|..++..+...+ ..+|-++.|+|+|||+++++.+.......... .-.-..+.++.+..
T Consensus 187 csrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~---------------------~~~~~~~~~l~~~l 244 (506)
T PF03141_consen 187 CSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDL---------------------EEEWNAMEDLAKSL 244 (506)
T ss_pred cccccccchhcc-cceeehhhhhhccCceEEecCCcccccchHHH---------------------HHHHHHHHHHHHHH
Confidence 999887664333 46899999999999999997554431000000 00134555666665
Q ss_pred CCcEEEeeeeeccccccccccccceeEEEEEEEecCCCCCCccch--hhhhhhccccc-chhhhhhhhhcCcCCCccccc
Q 008457 232 GFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEA--SVRVDIFNQAI-IEPDVAANTLKEPMNDSEVDM 308 (564)
Q Consensus 232 Gf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~e~~~~~~~l~~~i~~~~~~~ 308 (564)
-++.+..... .+.|+||... ++.... .....+|.... .+..++..+-.++-...+..
T Consensus 245 CW~~va~~~~------------------~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~- 304 (506)
T PF03141_consen 245 CWKKVAEKGD------------------TAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVS- 304 (506)
T ss_pred HHHHheeeCC------------------EEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCccc-
Confidence 5554422111 3567787755 333111 12334444221 01122222221111111100
Q ss_pred chHHHHhhhCCCC--CCCceEEEEEeCCceEEEE-EecccccccCCCccceechhHHHHHHHHhcCCCCC--CCCeEEEe
Q 008457 309 SEGVAFEMFGLSS--FEDNEMIEVNLRDRSFKIE-VLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIV--AGKKVLEL 383 (564)
Q Consensus 309 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~--~~~~vLel 383 (564)
++ . ..+..+ +++....+-.+.... +. .....+ ..-...|...+--..-+. .+.+. .-..|+|.
T Consensus 305 ~~-~---~~~~~~~WP~RL~~~P~rl~~~~--~~g~~~e~F-----~~Dt~~Wk~~V~~Y~~l~-~~~i~~~~iRNVMDM 372 (506)
T PF03141_consen 305 SE-I---AGGWLPKWPERLNAVPPRLSSGS--IPGISPEEF-----KEDTKHWKKRVSHYKKLL-GLAIKWGRIRNVMDM 372 (506)
T ss_pred cc-c---cccCCCCChhhhccCchhhhcCC--cCCCCHHHH-----HHHHHHHHHHHHHHHHhh-cccccccceeeeeee
Confidence 00 0 000000 000000000000000 00 000000 001245554432222122 22222 33489999
Q ss_pred CCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEe
Q 008457 384 GCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGT 461 (564)
Q Consensus 384 G~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~ 461 (564)
.+|.|+++..+..... -.|+-++. +..+..+-. -++ --.-.||.+. + +..+..||+|-+.
T Consensus 373 nAg~GGFAAAL~~~~VWVMNVVP~~~-~ntL~vIyd----RGL-------IG~yhDWCE~--f----sTYPRTYDLlHA~ 434 (506)
T PF03141_consen 373 NAGYGGFAAALIDDPVWVMNVVPVSG-PNTLPVIYD----RGL-------IGVYHDWCEA--F----STYPRTYDLLHAD 434 (506)
T ss_pred cccccHHHHHhccCCceEEEecccCC-CCcchhhhh----ccc-------chhccchhhc--c----CCCCcchhheehh
Confidence 9999988887765442 24554432 333332211 122 1234678754 2 2346799998876
Q ss_pred ceee---CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC-hhHHHHHHHHcCCeEEEEc
Q 008457 462 DVSY---IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-EPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 462 d~~y---~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~g~~~~~~~ 525 (564)
.++- +.-.+..++-.+.|+| +|+| .+++ +.... .......+.+..+++....
T Consensus 435 ~lfs~~~~rC~~~~illEmDRIL-RP~G--------~~ii---RD~~~vl~~v~~i~~~lrW~~~~~d 490 (506)
T PF03141_consen 435 GLFSLYKDRCEMEDILLEMDRIL-RPGG--------WVII---RDTVDVLEKVKKIAKSLRWEVRIHD 490 (506)
T ss_pred hhhhhhcccccHHHHHHHhHhhc-CCCc--------eEEE---eccHHHHHHHHHHHHhCcceEEEEe
Confidence 5532 3457889999999999 9998 6655 22222 2344455556677776544
No 112
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.33 E-value=1e-11 Score=115.93 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=85.6
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~ 141 (564)
..+.+.+...++.+|||+|||+|..+..+++..+ +.+|+++|+++++++.|+++....+ .++++..+|.... +
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~-~--- 137 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG-L--- 137 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC-C---
Confidence 4445556667889999999999999999888743 5699999999999999988765433 3588889988542 1
Q ss_pred CCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
...++||+|++..++++++ +++.+.|+|||.+++..
T Consensus 138 ~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 EKHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 1346899999999888774 35788999999998853
No 113
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.32 E-value=4e-11 Score=117.47 Aligned_cols=127 Identities=19% Similarity=0.243 Sum_probs=96.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++..++...|+.+|+++|+|+.+++.|+++....+ .++.++++|+.. ++++++||+|+
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-----~~~~~~fD~Iv 194 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-----ALPGRKYDLIV 194 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-----ccCCCCccEEE
Confidence 45679999999999999999999888999999999999999998875443 468999999753 23456899999
Q ss_pred Ecc------ccc-------CCC----------hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccccccccccee
Q 008457 152 MVF------VLS-------AVS----------PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFY 208 (564)
Q Consensus 152 ~~~------vl~-------~~~----------~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (564)
++- .+. |-| .+....+++++.+.|+|||.+++....
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--------------------- 253 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--------------------- 253 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---------------------
Confidence 961 111 111 123467899999999999999875321
Q ss_pred ecCCCceeeccCHHHHHHHHHhCCCcEEE
Q 008457 209 VRGDGTRAFYFSNDFLTSLFKENGFDVEE 237 (564)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~ 237 (564)
+.+.+.+++.+.||....
T Consensus 254 -----------~~~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 254 -----------SMEALEEAYPDVPFTWLE 271 (284)
T ss_pred -----------CHHHHHHHHHhCCCceee
Confidence 235677888888887643
No 114
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.32 E-value=4.7e-12 Score=113.33 Aligned_cols=191 Identities=16% Similarity=0.276 Sum_probs=124.5
Q ss_pred CCCCCCCChhHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEE
Q 008457 23 PTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFV 102 (564)
Q Consensus 23 ~~~~~~~~~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v 102 (564)
+.+.+.-+.+....|++-|..|-+-...+.. |.....+.+.+.+ ...-+-.++||+|||||-.+..|... --++
T Consensus 77 e~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~---Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~--a~~l 150 (287)
T COG4976 77 ETPEKPPSAYVETLFDQYAERFDHILVDKLG---YSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDM--ADRL 150 (287)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHhc---CccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHH--Hhhc
Confidence 4445555666666777766665433322211 2223333333332 33344789999999999999888777 4579
Q ss_pred EEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEE
Q 008457 103 YACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVL 182 (564)
Q Consensus 103 ~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~li 182 (564)
+|+|+|..|+++|.++.... ...+.+... +......+.||+|++..||.++. .+..++.-+...|+|||.+.
T Consensus 151 tGvDiS~nMl~kA~eKg~YD----~L~~Aea~~--Fl~~~~~er~DLi~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfa 222 (287)
T COG4976 151 TGVDISENMLAKAHEKGLYD----TLYVAEAVL--FLEDLTQERFDLIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFA 222 (287)
T ss_pred cCCchhHHHHHHHHhccchH----HHHHHHHHH--HhhhccCCcccchhhhhHHHhhc--chhhHHHHHHHhcCCCceEE
Confidence 99999999999999874311 111222211 11113567899999999999995 78889999999999999999
Q ss_pred EEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 183 FRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 183 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
++.-...+.. .| .. .....|-.+...++.+++..||+++.+..+.
T Consensus 223 FSvE~l~~~~-------------~f-~l-~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 223 FSVETLPDDG-------------GF-VL-GPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred EEecccCCCC-------------Ce-ec-chhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 9754443321 01 11 1112223477889999999999998876543
No 115
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.32 E-value=6.6e-11 Score=114.71 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=78.2
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
+.++.+|||+|||+|.++..++... ..+|+++|+|++|++.++++....... ...++.+...|..+. +++
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~l-------p~~ 142 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDL-------PFD 142 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccC-------CCC
Confidence 3467899999999998777666542 358999999999999998765421110 013455554443321 345
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+++||+|+++.++.+..+...+++.+.++| +|+|
T Consensus 143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rvL-kpGG 176 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDRLKAMQEMYRVL-KPGS 176 (261)
T ss_pred CCCEeEEEEecccccCCCHHHHHHHHHHHc-CcCc
Confidence 679999999999999999999999999999 9988
No 116
>PRK14967 putative methyltransferase; Provisional
Probab=99.32 E-value=5.3e-11 Score=112.90 Aligned_cols=107 Identities=20% Similarity=0.151 Sum_probs=81.8
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++....+.++.+...|+.. .+++++||+|++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-----~~~~~~fD~Vi~ 107 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-----AVEFRPFDVVVS 107 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-----hccCCCeeEEEE
Confidence 3567899999999999999888763 3489999999999999988765444567788888753 235678999999
Q ss_pred cccccCCC-------------------hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 153 VFVLSAVS-------------------PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 153 ~~vl~~~~-------------------~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+--...-+ ......+++++.++|||||.+++..
T Consensus 108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 75322211 1125678899999999999999853
No 117
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.32 E-value=5e-12 Score=121.68 Aligned_cols=109 Identities=28% Similarity=0.435 Sum_probs=91.7
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCcee
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
......+..+|||||+|.|.++..+++++|+.+++.+|. |..++.+++ ..+++++.+|+. . ++|. +|
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~----~~P~--~D 160 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-D----PLPV--AD 160 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-T----CCSS--ES
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-h----hhcc--cc
Confidence 334445677999999999999999999999999999999 889988887 578999999997 3 3454 99
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCC--eEEEEEecCCCc
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPT--GYVLFRDYAIGD 190 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~Lkpg--G~lii~~~~~~~ 190 (564)
+|++.++||++++++...+|+++++.|+|| |+|+|.+...++
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 999999999999999999999999999999 999998876443
No 118
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.31 E-value=1.5e-11 Score=122.83 Aligned_cols=119 Identities=15% Similarity=0.240 Sum_probs=93.7
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
+.+.+....+..+||||||+|.++..+++.+|+..++|+|+++.++..|.++....+ .++.++++|+... ...++++
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l--l~~~~~~ 191 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL--LELLPSN 191 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh--hhhCCCC
Confidence 344455566789999999999999999999999999999999999999988765433 5799999998532 2246789
Q ss_pred ceeEEEEcccccCCChhH----HHHHHHHHHhccCCCeEEEEEecC
Q 008457 146 SIDIVTMVFVLSAVSPEK----MSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~----~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++|.|++++...|..... ...++.++.|+|+|||.+.+.+-.
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 999999976655432111 257999999999999999986543
No 119
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.31 E-value=1.2e-11 Score=122.51 Aligned_cols=163 Identities=23% Similarity=0.366 Sum_probs=106.7
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-------c----CCCeeEEEecCCcccccCCCC
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-------T----ETRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-------~----~~~i~~~~~d~~~~~~~~~~~ 143 (564)
++.+|||+|||-|..+.-..... -.+++|+|++...++.|+++... . .-...|+.+|.....+...++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 78999999999999888777663 45899999999999999988721 1 124567788877665554455
Q ss_pred CC--ceeEEEEcccccCC--ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcc---------ccccccc-----
Q 008457 144 PS--SIDIVTMVFVLSAV--SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG---------KDQKISE----- 205 (564)
Q Consensus 144 ~~--~fD~V~~~~vl~~~--~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~---------~~~~~~~----- 205 (564)
+. .||+|.|.++||+. +.+....+|+++.+.|+|||+++.+.+....... ++.. ....+..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~-~l~~~~~~~~~~~~gN~~y~I~f~~ 219 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVK-RLREKKSNSEKKKFGNSVYSIEFDS 219 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHC-CHHC-EEECCCSCSETSSEEEEESC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHH-HHHhhcccccccccCCccEEEEecc
Confidence 44 99999999999976 5677888999999999999999998765432210 0000 0010100
Q ss_pred ---------c--eeecC--CCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 206 ---------N--FYVRG--DGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 206 ---------~--~~~~~--~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
. |+... +....|....+.+.+++++.|++.+...
T Consensus 220 ~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~ 266 (331)
T PF03291_consen 220 DDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKK 266 (331)
T ss_dssp CSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEE
T ss_pred cCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeC
Confidence 0 11111 1233456678999999999999988643
No 120
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.31 E-value=4.3e-11 Score=111.30 Aligned_cols=131 Identities=17% Similarity=0.179 Sum_probs=98.5
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCc
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+...++.+|||+|||+|.++..+++. .++.+|+++|+++.+++.|+++....+ .++.++.+|+... + +...+.
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~-l--~~~~~~ 111 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI-L--FTINEK 111 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-H--hhcCCC
Confidence 345578899999999999999988876 456799999999999999988765443 5788888887532 1 112368
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHH
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 226 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (564)
||+|++... . .++..+++.+.+.|+|||++++..... -+..++..
T Consensus 112 ~D~V~~~~~---~--~~~~~~l~~~~~~LkpgG~lv~~~~~~------------------------------~~~~~~~~ 156 (198)
T PRK00377 112 FDRIFIGGG---S--EKLKEIISASWEIIKKGGRIVIDAILL------------------------------ETVNNALS 156 (198)
T ss_pred CCEEEECCC---c--ccHHHHHHHHHHHcCCCcEEEEEeecH------------------------------HHHHHHHH
Confidence 999998542 1 356789999999999999998743211 13567778
Q ss_pred HHHhCCCcEEEe
Q 008457 227 LFKENGFDVEEL 238 (564)
Q Consensus 227 ~l~~aGf~~~~~ 238 (564)
.+++.||.....
T Consensus 157 ~l~~~g~~~~~~ 168 (198)
T PRK00377 157 ALENIGFNLEIT 168 (198)
T ss_pred HHHHcCCCeEEE
Confidence 889999955433
No 121
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.31 E-value=7e-11 Score=116.30 Aligned_cols=140 Identities=23% Similarity=0.264 Sum_probs=99.1
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 358 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 358 W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
.+.+....+++.... .++.+|||+|||+|.++..++..++.+|+++|+++.+++.+++|+..|+.. ..+.+...+
T Consensus 143 h~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~---~~~~~~~~~ 217 (288)
T TIGR00406 143 HPTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS---DRLQVKLIY 217 (288)
T ss_pred CHHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC---cceEEEecc
Confidence 355555555555432 367899999999998887777667779999999999999999999998864 233333221
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHc
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC 517 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 517 (564)
- .....++||+|+++- + ...+..++..+.++| +|+| .++++...+.. ...+.+.+.+.
T Consensus 218 ~---------~~~~~~~fDlVvan~-~--~~~l~~ll~~~~~~L-kpgG--------~li~sgi~~~~-~~~v~~~~~~~ 275 (288)
T TIGR00406 218 L---------EQPIEGKADVIVANI-L--AEVIKELYPQFSRLV-KPGG--------WLILSGILETQ-AQSVCDAYEQG 275 (288)
T ss_pred c---------ccccCCCceEEEEec-C--HHHHHHHHHHHHHHc-CCCc--------EEEEEeCcHhH-HHHHHHHHHcc
Confidence 0 012346899999752 2 234567889999999 9988 88887665433 34567777665
Q ss_pred CCeEEEEc
Q 008457 518 GFRLVDKW 525 (564)
Q Consensus 518 g~~~~~~~ 525 (564)
|++.++.
T Consensus 276 -f~~~~~~ 282 (288)
T TIGR00406 276 -FTVVEIR 282 (288)
T ss_pred -CceeeEe
Confidence 8888765
No 122
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.30 E-value=1.9e-11 Score=108.69 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=88.3
Q ss_pred CCCeEEEeCCcccHHHHHHHh-cC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAA-GS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~-~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
++.+|||||||+|.++..++. .+ ..+|+++|+++++++.+++++..++. .++.+..-|+.+.+ .. ++ +
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~----~ni~~~~~d~~~l~---~~--~~-~ 72 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL----DNIEFIQGDIEDLP---QE--LE-E 72 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS----TTEEEEESBTTCGC---GC--SS-T
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc----cccceEEeehhccc---cc--cC-C
Confidence 578999999999988877773 33 57999999999999999999998876 36888887776521 00 12 6
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
.||+|++..++++..+...+++.+.++| +++| .+++....
T Consensus 73 ~~D~I~~~~~l~~~~~~~~~l~~~~~~l-k~~G--------~~i~~~~~ 112 (152)
T PF13847_consen 73 KFDIIISNGVLHHFPDPEKVLKNIIRLL-KPGG--------ILIISDPN 112 (152)
T ss_dssp TEEEEEEESTGGGTSHHHHHHHHHHHHE-EEEE--------EEEEEEEE
T ss_pred CeeEEEEcCchhhccCHHHHHHHHHHHc-CCCc--------EEEEEECC
Confidence 9999999999999999999999999999 9988 77777666
No 123
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.30 E-value=1.1e-11 Score=110.80 Aligned_cols=130 Identities=19% Similarity=0.184 Sum_probs=90.9
Q ss_pred EEEeCChHHHHHHHhccccc----CCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCC
Q 008457 103 YACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPT 178 (564)
Q Consensus 103 ~~iD~s~~~l~~a~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lkpg 178 (564)
+|+|+|+.|++.|+++.... ..+++++++|+.+. |+++++||+|++..++++++ ++..++++++|+||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL----PFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC----CCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcC
Confidence 48999999999998764321 24689999998643 56888999999999999994 7889999999999999
Q ss_pred eEEEEEecCCCchhhhhhcc-cc----cccccceeecCCCce-------eeccCHHHHHHHHHhCCCcEEEee
Q 008457 179 GYVLFRDYAIGDLAQERLTG-KD----QKISENFYVRGDGTR-------AFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 179 G~lii~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~-------~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
|.+++.++..++........ +. ......+. ...... ..+.+.+++.++++++||..+...
T Consensus 75 G~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 75 SRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVY-DLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred eEEEEEECCCCChHHHHHHHHHHccchHhhhhHHh-CChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 99999988765432221110 00 00000000 000011 125699999999999999877543
No 124
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.30 E-value=7.6e-11 Score=109.37 Aligned_cols=99 Identities=26% Similarity=0.281 Sum_probs=77.4
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..++.+|||+|||+|..+..++.. +.+|+++|+|+.+++.+++++..++.. .+.+...|+.+. ++ ++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~----~v~~~~~d~~~~-------~~-~~ 94 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD----NLHTAVVDLNNL-------TF-DG 94 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC----cceEEecChhhC-------Cc-CC
Confidence 346789999999999877777765 458999999999999999998887652 355555554322 11 35
Q ss_pred CccEEEEeceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 454 GFEVILGTDVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
+||+|+++.++++. ...+.+++.+.++| +|+|
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~L-kpgG 128 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCT-KPGG 128 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHc-CCCc
Confidence 79999999987653 46889999999999 9988
No 125
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.29 E-value=1.1e-10 Score=111.63 Aligned_cols=102 Identities=12% Similarity=0.057 Sum_probs=79.4
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhc-C-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~-~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
.+.++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..++. .++.+...|..+. ++
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~-------~~ 110 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL----HNVELVHGNAMEL-------PF 110 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC----CceEEEEechhcC-------CC
Confidence 3446789999999999777766654 2 35999999999999999999876654 3455544443221 23
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+.++||+|+++.++.+......+++.+.++| +|+|
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~L-k~gG 145 (231)
T TIGR02752 111 DDNSFDYVTIGFGLRNVPDYMQVLREMYRVV-KPGG 145 (231)
T ss_pred CCCCccEEEEecccccCCCHHHHHHHHHHHc-CcCe
Confidence 4568999999888888888999999999999 9988
No 126
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=4.4e-11 Score=114.67 Aligned_cols=137 Identities=23% Similarity=0.334 Sum_probs=99.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCC--eeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETR--VSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~--i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++...++.+ ..+|+|+|++|.+++.|+.+...++.. ++....+.. .....++||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~-----~~~~~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL-----EVPENGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch-----hhcccCcccEEE
Confidence 589999999999999999888873 346999999999999999987654433 111111111 111346999999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
+|- |- +-+..+...+++.|||||+++++-.... ..+.+.+.+.++
T Consensus 235 ANI-LA----~vl~~La~~~~~~lkpgg~lIlSGIl~~------------------------------q~~~V~~a~~~~ 279 (300)
T COG2264 235 ANI-LA----EVLVELAPDIKRLLKPGGRLILSGILED------------------------------QAESVAEAYEQA 279 (300)
T ss_pred ehh-hH----HHHHHHHHHHHHHcCCCceEEEEeehHh------------------------------HHHHHHHHHHhC
Confidence 976 33 2356899999999999999999743210 256677888899
Q ss_pred CCcEEEeeeeeccccccccccccceeEEEEEEEe
Q 008457 232 GFDVEELGLCCKQVENRARELVMNRRWVQAVFCS 265 (564)
Q Consensus 232 Gf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (564)
||.++..... ..|+...++|
T Consensus 280 gf~v~~~~~~--------------~eW~~i~~kr 299 (300)
T COG2264 280 GFEVVEVLER--------------EEWVAIVGKR 299 (300)
T ss_pred CCeEeEEEec--------------CCEEEEEEEc
Confidence 9999876443 4588777765
No 127
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.29 E-value=2.9e-11 Score=113.42 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=86.1
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSR 140 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~ 140 (564)
+...+.+.+...++.+|||||||+|..+..+++.. ++.+|+++|+++.+++.|+++....+ .++.++++|.....
T Consensus 64 ~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~--- 140 (212)
T PRK13942 64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY--- 140 (212)
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC---
Confidence 33445556666889999999999999999888873 45799999999999999998875433 47899999975321
Q ss_pred CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 141 QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.+.++||+|++.....+++ +.+.+.|||||.+++.
T Consensus 141 -~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 141 -EENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred -CcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 2457899999988766553 3567789999999885
No 128
>PTZ00146 fibrillarin; Provisional
Probab=99.28 E-value=1.8e-10 Score=110.56 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=78.5
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeE
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
+...++.+|||+|||+|.++.+++... +...|+++|+++.+.+........ ..++.++..|+.... ....+.++||+
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-r~NI~~I~~Da~~p~-~y~~~~~~vDv 205 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-RPNIVPIIEDARYPQ-KYRMLVPMVDV 205 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCCEEEECCccChh-hhhcccCCCCE
Confidence 334788999999999999999999884 456899999998755333332211 157888888886432 01223457999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
|++.... +++...++.++.++|||||.|++.
T Consensus 206 V~~Dva~----pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVAQ----PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCCC----cchHHHHHHHHHHhccCCCEEEEE
Confidence 9997641 245667788999999999999995
No 129
>PRK14968 putative methyltransferase; Provisional
Probab=99.28 E-value=9e-11 Score=108.48 Aligned_cols=145 Identities=20% Similarity=0.161 Sum_probs=103.1
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~ 435 (564)
..+..+.+|.+++.. .++++|||+|||+|.++..++.. ..+|+++|+++++++.+++|+..++... ..+.+..
T Consensus 7 ~p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~--~~~~~~~ 79 (188)
T PRK14968 7 EPAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRN--NGVEVIR 79 (188)
T ss_pred CcchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCC--cceEEEe
Confidence 345667777777754 36789999999999877777666 6799999999999999999998877631 1155555
Q ss_pred eecCCCccchhhhhhcCCCccEEEEeceeeCC---------------------CChHHHHHHHHHHhhccCCCCCCCCCc
Q 008457 436 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIP---------------------EAILPLFATAKELTASSNKSLREDQQP 494 (564)
Q Consensus 436 l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---------------------~~~~~l~~~~~~ll~~~~g~~~~~~~~ 494 (564)
.|+.+. +...+||+|+++...+.. ..+..+++.+.++| +|+|
T Consensus 80 ~d~~~~--------~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L-k~gG-------- 142 (188)
T PRK14968 80 SDLFEP--------FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYL-KPGG-------- 142 (188)
T ss_pred cccccc--------ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhc-CCCe--------
Confidence 554332 233489999976554431 12466899999999 9987
Q ss_pred EEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 495 AFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 495 ~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+++..... .....+.+.+.+.||++..+.
T Consensus 143 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 143 RILLLQSSL-TGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred EEEEEEccc-CCHHHHHHHHHHCCCeeeeee
Confidence 555544322 123467888889999988765
No 130
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=8.3e-11 Score=115.74 Aligned_cols=132 Identities=20% Similarity=0.283 Sum_probs=99.8
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc-ccCCCeeEEEecCCcccccCCCCCCceeE
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-FTETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
....++.+|||+|||+|..+..++...|..+++|+|+|+.+++.|+++.. ....++.++.+|+.. +++.++||+
T Consensus 104 ~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-----~~~~~~fD~ 178 (275)
T PRK09328 104 LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-----PLPGGRFDL 178 (275)
T ss_pred ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-----cCCCCceeE
Confidence 33467789999999999999999999888999999999999999998865 334578999998843 234578999
Q ss_pred EEEccccc------CCC------------------hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccccccccc
Q 008457 150 VTMVFVLS------AVS------------------PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISE 205 (564)
Q Consensus 150 V~~~~vl~------~~~------------------~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~ 205 (564)
|+++--.. .+. .+....+++++.++|+|||.+++.. ..
T Consensus 179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~----------------- 240 (275)
T PRK09328 179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GY----------------- 240 (275)
T ss_pred EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-Cc-----------------
Confidence 99953211 010 1234678889999999999999842 10
Q ss_pred ceeecCCCceeeccCHHHHHHHHHhCCCcEEEe
Q 008457 206 NFYVRGDGTRAFYFSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 238 (564)
...+.+.+++++.||..+..
T Consensus 241 -------------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 241 -------------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred -------------hHHHHHHHHHHhCCCceeEE
Confidence 13467888999999985544
No 131
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.28 E-value=5.7e-11 Score=110.96 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=79.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc----cCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL----SRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~~fD 148 (564)
.++.+|||+|||+|.++..+++.. +..+|+|+|+++ |. ...++.++++|+..... ..++..++||
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~---------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD---------PIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc---------CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 678899999999999999998884 457999999988 21 12358899999876421 0134578899
Q ss_pred EEEEcccccCCChh--H-------HHHHHHHHHhccCCCeEEEEEecCC
Q 008457 149 IVTMVFVLSAVSPE--K-------MSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 149 ~V~~~~vl~~~~~~--~-------~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
+|++..+.++.... + ...+|+++.++|||||.+++..+..
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 99998876664311 1 2468999999999999999976543
No 132
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.28 E-value=1.5e-11 Score=99.74 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=72.3
Q ss_pred EEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEE
Q 008457 381 LELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILG 460 (564)
Q Consensus 381 LelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~ 460 (564)
||+|||+|..+..++.....+|+++|+++.+++.++++....+ +.+...+..+. ++++++||+|++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~-------~~~~~~d~~~l-------~~~~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG-------VSFRQGDAEDL-------PFPDNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST-------EEEEESBTTSS-------SS-TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC-------chheeehHHhC-------cccccccccccc
Confidence 8999999977777777767899999999999999999866533 33555554432 556789999999
Q ss_pred eceeeCCCChHHHHHHHHHHhhccCC
Q 008457 461 TDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 461 ~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..++++.++...+++.+.++| ||+|
T Consensus 67 ~~~~~~~~~~~~~l~e~~rvL-k~gG 91 (95)
T PF08241_consen 67 NSVLHHLEDPEAALREIYRVL-KPGG 91 (95)
T ss_dssp ESHGGGSSHHHHHHHHHHHHE-EEEE
T ss_pred ccceeeccCHHHHHHHHHHHc-CcCe
Confidence 999999999999999999999 9988
No 133
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.28 E-value=1.3e-10 Score=116.94 Aligned_cols=131 Identities=21% Similarity=0.276 Sum_probs=98.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|..+..++...|+.+|+++|+|+.+++.|+++....+.++.++++|+..... + ..++||+|+|+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l--~-~~~~FDLIVSN 326 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM--P-SEGKWDIIVSN 326 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc--c-cCCCccEEEEC
Confidence 35579999999999999999988888999999999999999999876555689999999854322 1 24579999995
Q ss_pred ccccC-----C------------------ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeec
Q 008457 154 FVLSA-----V------------------SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVR 210 (564)
Q Consensus 154 ~vl~~-----~------------------~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (564)
--... . ..+-...+++++.+.|+|||.+++.. ..
T Consensus 327 PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G~---------------------- 383 (423)
T PRK14966 327 PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-GF---------------------- 383 (423)
T ss_pred CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-Cc----------------------
Confidence 52110 0 01124577788889999999987642 11
Q ss_pred CCCceeeccCHHHHHHHHHhCCCcEEEe
Q 008457 211 GDGTRAFYFSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 211 ~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 238 (564)
-..+.+.+++++.||..+++
T Consensus 384 --------~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 384 --------DQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred --------cHHHHHHHHHHHCCCcEEEE
Confidence 13677889999999987655
No 134
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.27 E-value=1.2e-10 Score=107.47 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=93.4
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++.+|||+|||+|.++..++... ..+|+++|.++.+++.+++|+..++. .++.+...+.. . .+
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~----~~i~~~~~d~~-----~---~~- 94 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC----GNIDIIPGEAP-----I---EL- 94 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCeEEEecCch-----h---hc-
Confidence 34477899999999998888777655 35999999999999999999998775 23554433221 0 11
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..+||+|++... ...+..+++.+.++| +|+| .+++.... ......+...+.+.||+..++...
T Consensus 95 ~~~~D~v~~~~~---~~~~~~~l~~~~~~L-k~gG--------~lv~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 95 PGKADAIFIGGS---GGNLTAIIDWSLAHL-HPGG--------RLVLTFIL-LENLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred CcCCCEEEECCC---ccCHHHHHHHHHHhc-CCCe--------EEEEEEec-HhhHHHHHHHHHHCCCCcceEEEE
Confidence 358999997543 235788999999999 9988 77665432 223346788888999977666533
No 135
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.26 E-value=1e-10 Score=111.30 Aligned_cols=130 Identities=13% Similarity=0.164 Sum_probs=101.3
Q ss_pred CeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 378 KKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
++|||+|||+|.++..++... ..+|+++|+|+++++.+++++...++. .++.+...|.... + .+++||
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~---~~i~~~~~d~~~~-------~-~~~~fD 69 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ---GRIRIFYRDSAKD-------P-FPDTYD 69 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC---cceEEEecccccC-------C-CCCCCC
Confidence 479999999998777777665 468999999999999999999887664 4667766665432 1 135899
Q ss_pred EEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------cCChhHHHHHHHHcCCeEE
Q 008457 457 VILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------QVDEPSMLSAATQCGFRLV 522 (564)
Q Consensus 457 ~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--------------~~~~~~~~~~~~~~g~~~~ 522 (564)
+|++..++++..+...+++.+.++| +|+| .+++..... ..+...+.+.+.+.||++.
T Consensus 70 ~I~~~~~l~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 70 LVFGFEVIHHIKDKMDLFSNISRHL-KDGG--------HLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred EeehHHHHHhCCCHHHHHHHHHHHc-CCCC--------EEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 9999999999899999999999999 9988 666654321 1123456778889999999
Q ss_pred EEcCC
Q 008457 523 DKWPS 527 (564)
Q Consensus 523 ~~~~~ 527 (564)
+....
T Consensus 141 ~~~~~ 145 (224)
T smart00828 141 EGVDA 145 (224)
T ss_pred EeEEC
Confidence 88654
No 136
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.26 E-value=1.4e-11 Score=111.88 Aligned_cols=101 Identities=19% Similarity=0.222 Sum_probs=74.7
Q ss_pred eEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEccccc
Q 008457 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLS 157 (564)
Q Consensus 78 ~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~ 157 (564)
.++|+|||+|..++.+++.+ -+|+|+|+|+.|++.|+++......+....-.+-....+ --.++++|+|+|..++|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L--~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL--LGGEESVDLITAAQAVH 111 (261)
T ss_pred eEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccc--cCCCcceeeehhhhhHH
Confidence 89999999998888888884 469999999999999998765322222221111111111 11378999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCe-EEEEEe
Q 008457 158 AVSPEKMSLVLQNIKKVLKPTG-YVLFRD 185 (564)
Q Consensus 158 ~~~~~~~~~~l~~~~r~LkpgG-~lii~~ 185 (564)
|+ +..+++++++|+||+.| .+.+-.
T Consensus 112 WF---dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 112 WF---DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred hh---chHHHHHHHHHHcCCCCCEEEEEE
Confidence 99 78899999999999877 555533
No 137
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.25 E-value=1.1e-10 Score=114.53 Aligned_cols=132 Identities=18% Similarity=0.210 Sum_probs=98.7
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc-CC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~-~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
+.++.+|||+|||+|..+..++.. +. .+|+++|+++.+++.+++|...++. .++.+..-++.+. +++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~----~~v~~~~~d~~~l-------~~~ 143 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY----TNVEFRLGEIEAL-------PVA 143 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC----CCEEEEEcchhhC-------CCC
Confidence 447889999999999666555543 33 4899999999999999999887665 3455554444321 234
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee---------------------ccCChhHH
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF---------------------RQVDEPSM 510 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~---------------------r~~~~~~~ 510 (564)
+++||+|+++.++.+..+...+++.+.++| +|+| .++++... ......++
T Consensus 144 ~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~L-kpGG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 214 (272)
T PRK11873 144 DNSVDVIISNCVINLSPDKERVFKEAFRVL-KPGG--------RFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEY 214 (272)
T ss_pred CCceeEEEEcCcccCCCCHHHHHHHHHHHc-CCCc--------EEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHH
Confidence 568999998888888888999999999999 9988 66664321 11233467
Q ss_pred HHHHHHcCCeEEEEc
Q 008457 511 LSAATQCGFRLVDKW 525 (564)
Q Consensus 511 ~~~~~~~g~~~~~~~ 525 (564)
.+.+.+.||...++.
T Consensus 215 ~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 215 LAMLAEAGFVDITIQ 229 (272)
T ss_pred HHHHHHCCCCceEEE
Confidence 888888999998774
No 138
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.25 E-value=3.3e-10 Score=100.15 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=106.4
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
...+.+.++.+++|||||+|..+..++..+|.++|+++|-++++++..+++....+ .++..+.+++..... +. .+
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~--~~--~~ 102 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP--DL--PS 102 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc--CC--CC
Confidence 44566789999999999999999999988999999999999999999888765544 788999998854311 11 27
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHH
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 226 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (564)
+|.|+.... . ....+|+.+...|||||.+++...... +.....+
T Consensus 103 ~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~naitlE------------------------------~~~~a~~ 146 (187)
T COG2242 103 PDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVANAITLE------------------------------TLAKALE 146 (187)
T ss_pred CCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEeecHH------------------------------HHHHHHH
Confidence 999999887 3 356789999999999999998643321 4556678
Q ss_pred HHHhCCC-cEEEeeeee
Q 008457 227 LFKENGF-DVEELGLCC 242 (564)
Q Consensus 227 ~l~~aGf-~~~~~~~~~ 242 (564)
.+++.|+ +++++....
T Consensus 147 ~~~~~g~~ei~~v~is~ 163 (187)
T COG2242 147 ALEQLGGREIVQVQISR 163 (187)
T ss_pred HHHHcCCceEEEEEeec
Confidence 8999999 666655543
No 139
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.25 E-value=5.3e-11 Score=115.58 Aligned_cols=135 Identities=24% Similarity=0.338 Sum_probs=97.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++...++.+ ..+|+|+|++|.+++.|+.+...++...++..... . ....++||+|++|
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~--~----~~~~~~~dlvvAN 232 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS--E----DLVEGKFDLVVAN 232 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT--S----CTCCS-EEEEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe--c----ccccccCCEEEEC
Confidence 578899999999999998888873 34799999999999999998765543333332211 1 2245899999996
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
-... -+..++..+.+.|+|||+++++-... -..+.+.+.+++ ||
T Consensus 233 I~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl~------------------------------~~~~~v~~a~~~-g~ 276 (295)
T PF06325_consen 233 ILAD-----VLLELAPDIASLLKPGGYLILSGILE------------------------------EQEDEVIEAYKQ-GF 276 (295)
T ss_dssp S-HH-----HHHHHHHHCHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHT-TE
T ss_pred CCHH-----HHHHHHHHHHHhhCCCCEEEEccccH------------------------------HHHHHHHHHHHC-CC
Confidence 6433 45678888999999999999974321 136777888876 99
Q ss_pred cEEEeeeeeccccccccccccceeEEEEEEEe
Q 008457 234 DVEELGLCCKQVENRARELVMNRRWVQAVFCS 265 (564)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (564)
++++.... ..|+...++|
T Consensus 277 ~~~~~~~~--------------~~W~~l~~~K 294 (295)
T PF06325_consen 277 ELVEEREE--------------GEWVALVFKK 294 (295)
T ss_dssp EEEEEEEE--------------TTEEEEEEEE
T ss_pred EEEEEEEE--------------CCEEEEEEEe
Confidence 98765433 3488777776
No 140
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.25 E-value=1.6e-11 Score=113.01 Aligned_cols=112 Identities=18% Similarity=0.281 Sum_probs=80.9
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.+.|++|||+|||+|.++.-++. .++.|+++|.++++++.+++....+-.. ...+.. .+..... +.+. ..+
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLAr-lga~V~GID~s~~~V~vA~~h~~~dP~~--~~~~~y-~l~~~~~-~~E~----~~~ 157 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLAR-LGAQVTGIDASDDMVEVANEHKKMDPVL--EGAIAY-RLEYEDT-DVEG----LTG 157 (282)
T ss_pred ccCCceEEEeccCccccchhhHh-hCCeeEeecccHHHHHHHHHhhhcCchh--ccccce-eeehhhc-chhh----ccc
Confidence 34678999999999966655554 5578999999999999999884433221 122111 1222111 1111 124
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
.||.|++++++.|..+++.+++.+.++| +|+| .++++...|
T Consensus 158 ~fDaVvcsevleHV~dp~~~l~~l~~~l-kP~G--------~lfittinr 198 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQEFLNCLSALL-KPNG--------RLFITTINR 198 (282)
T ss_pred ccceeeeHHHHHHHhCHHHHHHHHHHHh-CCCC--------ceEeeehhh
Confidence 6999999999999999999999999999 9988 777777765
No 141
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.25 E-value=8.5e-11 Score=106.25 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=113.5
Q ss_pred chhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-CCCe-eEEEecCCcccc
Q 008457 61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRV-STFVCDLISDDL 138 (564)
Q Consensus 61 ~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-~~~i-~~~~~d~~~~~~ 138 (564)
..+...+.+++. ..+.+|||||||||.++.++++..|..+..-.|+++..+.-.+...... ..|+ .-+..|+.....
T Consensus 12 ~pIl~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w 90 (204)
T PF06080_consen 12 DPILEVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW 90 (204)
T ss_pred hHHHHHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC
Confidence 344455555654 2333699999999999999999999999999999998864444332211 1232 234567765533
Q ss_pred cC----CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCc-----hhhhhhcccccccccceee
Q 008457 139 SR----QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD-----LAQERLTGKDQKISENFYV 209 (564)
Q Consensus 139 ~~----~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 209 (564)
+. ++..++||+|+|..++|-+|.+....+++.+.++|++||.|++.-+...+ .....|...++.....
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~--- 167 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPE--- 167 (204)
T ss_pred ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCC---
Confidence 21 22467899999999999999899999999999999999999996443221 1111221111111111
Q ss_pred cCCCceeeccCHHHHHHHHHhCCCcEEEe
Q 008457 210 RGDGTRAFYFSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 238 (564)
.-.-+.+++.++.+++|++.++.
T Consensus 168 ------~GiRD~e~v~~lA~~~GL~l~~~ 190 (204)
T PF06080_consen 168 ------WGIRDIEDVEALAAAHGLELEED 190 (204)
T ss_pred ------cCccCHHHHHHHHHHCCCccCcc
Confidence 11347889999999999987643
No 142
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.24 E-value=1.7e-10 Score=113.50 Aligned_cols=103 Identities=22% Similarity=0.401 Sum_probs=82.5
Q ss_pred CeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEc-
Q 008457 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMV- 153 (564)
Q Consensus 77 ~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~- 153 (564)
.+|||+|||+|.++..++...++.+|+++|+|+.+++.|+++....+ .++.++++|+.. +++..+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-----~~~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-----PLAGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-----cCcCCCccEEEECC
Confidence 79999999999999999998888899999999999999998765433 348999999854 2344589999996
Q ss_pred ------------ccccCCC----------hhHHHHHHHHHHhccCCCeEEEEE
Q 008457 154 ------------FVLSAVS----------PEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 154 ------------~vl~~~~----------~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.++.|-| .+....++.++.+.|+|||.+++.
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1233332 125678899999999999999875
No 143
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.24 E-value=1.4e-10 Score=114.55 Aligned_cols=104 Identities=19% Similarity=0.266 Sum_probs=82.2
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
..+|||+|||+|.++..++..+|+.+|+++|+|+.+++.|+++....+ .+++++++|+.. .++.++||+|+++
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-----~l~~~~fDlIvsN 208 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-----ALPGRRYDLIVSN 208 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-----hCCCCCccEEEEC
Confidence 378999999999999999999888999999999999999998875443 468999999753 2245689999996
Q ss_pred c------c-------ccCCC----------hhHHHHHHHHHHhccCCCeEEEEE
Q 008457 154 F------V-------LSAVS----------PEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 154 ~------v-------l~~~~----------~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
- . ++|-| .+....+++++.+.|+|||.+++.
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2 1 11211 123467899999999999999874
No 144
>PHA03411 putative methyltransferase; Provisional
Probab=99.24 E-value=1.8e-10 Score=109.10 Aligned_cols=161 Identities=12% Similarity=0.140 Sum_probs=109.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
....+|||+|||+|.++..++...++.+|+++|+++.|++.++++. .++.++++|+.... ...+||+|+++
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~~-----~~~kFDlIIsN 133 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEFE-----SNEKFDVVISN 133 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhhc-----ccCCCcEEEEc
Confidence 4567999999999999988888765679999999999999998864 26788899986431 34689999999
Q ss_pred ccccCCChhH------------------HHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCce
Q 008457 154 FVLSAVSPEK------------------MSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTR 215 (564)
Q Consensus 154 ~vl~~~~~~~------------------~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (564)
-.++|.+..+ +..++.....+|+|+|.+++.- .... .|
T Consensus 134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y-ss~~----------------~y------- 189 (279)
T PHA03411 134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY-SGRP----------------YY------- 189 (279)
T ss_pred CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE-eccc----------------cc-------
Confidence 8888865332 2456677788899999776641 1100 00
Q ss_pred eeccCHHHHHHHHHhCCCcEEE-eeeeeccccccccccccceeEEEEEEEecC
Q 008457 216 AFYFSNDFLTSLFKENGFDVEE-LGLCCKQVENRARELVMNRRWVQAVFCSSG 267 (564)
Q Consensus 216 ~~~~~~~~l~~~l~~aGf~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 267 (564)
.--++++++++++++.||...- ..+....+...+.++...-+.+...|..+.
T Consensus 190 ~~sl~~~~y~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PHA03411 190 DGTMKSNKYLKWSKQTGLVTYAGCGIDTSIYRDEWHSTNVLTEVVEVRYYEKE 242 (279)
T ss_pred cccCCHHHHHHHHHhcCcEecCCCCcccceehhhccCCCccceEEEEEecccc
Confidence 0024799999999999997642 222222233333333333444555554443
No 145
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.24 E-value=5.5e-11 Score=112.14 Aligned_cols=108 Identities=16% Similarity=0.116 Sum_probs=84.8
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~ 142 (564)
..+.+.+...++.+|||||||+|.++..+++.. +..+|+++|+++.+++.|+++....+ .+++++++|.... . .
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~-~---~ 142 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG-W---E 142 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC-C---c
Confidence 344555666889999999999999999998874 34679999999999999998875443 5789999988542 1 1
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
...+||+|++.....+++ ..+.+.|+|||++++.
T Consensus 143 ~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred ccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 246899999987766553 3477889999999885
No 146
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.23 E-value=5.2e-11 Score=107.03 Aligned_cols=119 Identities=18% Similarity=0.292 Sum_probs=87.0
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..++.+|||+|||+|.++..+...+. +|+++|+++.+++. .+ +.....+-. ....+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~~--------~~~~~~~~~-------~~~~~~~ 77 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------RN--------VVFDNFDAQ-------DPPFPDG 77 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------TT--------SEEEEEECH-------THHCHSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------hh--------hhhhhhhhh-------hhhcccc
Confidence 45788999999999977777755544 99999999999987 10 111111100 1123567
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc----------------------CChhHHH
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------VDEPSML 511 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~----------------------~~~~~~~ 511 (564)
+||+|++++++++..+...+++.+.++| +|+| .++++...+. .+...+.
T Consensus 78 ~fD~i~~~~~l~~~~d~~~~l~~l~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (161)
T PF13489_consen 78 SFDLIICNDVLEHLPDPEEFLKELSRLL-KPGG--------YLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELR 148 (161)
T ss_dssp SEEEEEEESSGGGSSHHHHHHHHHHHCE-EEEE--------EEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHH
T ss_pred chhhHhhHHHHhhcccHHHHHHHHHHhc-CCCC--------EEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHH
Confidence 9999999999999999999999999999 9988 7887777531 1123556
Q ss_pred HHHHHcCCeEEE
Q 008457 512 SAATQCGFRLVD 523 (564)
Q Consensus 512 ~~~~~~g~~~~~ 523 (564)
+.++++||++++
T Consensus 149 ~ll~~~G~~iv~ 160 (161)
T PF13489_consen 149 QLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHTTEEEEE
T ss_pred HHHHHCCCEEEE
Confidence 677777887764
No 147
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.23 E-value=1.6e-10 Score=114.55 Aligned_cols=131 Identities=13% Similarity=-0.031 Sum_probs=96.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||||||+|.++..++.. ...+|+++|.++++++.++++...+ ++.+..-|..+. ++.+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~-------~i~~i~gD~e~l-------p~~~~s 178 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-------ECKIIEGDAEDL-------PFPTDY 178 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc-------CCeEEeccHHhC-------CCCCCc
Confidence 5679999999999777666554 3468999999999999999886432 233333333211 234568
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------------cCChhHHHHHHHHcCC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR---------------QVDEPSMLSAATQCGF 519 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r---------------~~~~~~~~~~~~~~g~ 519 (564)
||+|+++.++.+..+.+.+++.+.++| +|+| .+++..... ....+++.+.+++.||
T Consensus 179 FDvVIs~~~L~~~~d~~~~L~e~~rvL-kPGG--------~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF 249 (340)
T PLN02490 179 ADRYVSAGSIEYWPDPQRGIKEAYRVL-KIGG--------KACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGF 249 (340)
T ss_pred eeEEEEcChhhhCCCHHHHHHHHHHhc-CCCc--------EEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCC
Confidence 999999999988888999999999999 9988 665543211 1134577889999999
Q ss_pred eEEEEcCCCC
Q 008457 520 RLVDKWPSKN 529 (564)
Q Consensus 520 ~~~~~~~~~~ 529 (564)
+..++..+..
T Consensus 250 ~~V~i~~i~~ 259 (340)
T PLN02490 250 KDVKLKRIGP 259 (340)
T ss_pred eEEEEEEcCh
Confidence 9988865533
No 148
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.22 E-value=2.1e-10 Score=107.16 Aligned_cols=145 Identities=13% Similarity=0.192 Sum_probs=110.9
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc--cCCCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
+.......+|||+|||+|..+..++++.+..+++++|+.+.+.+.|++.... ...++++++.|+.... ......+|
T Consensus 39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~--~~~~~~~f 116 (248)
T COG4123 39 FAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL--KALVFASF 116 (248)
T ss_pred hcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh--hccccccc
Confidence 3444568999999999999999999997779999999999999999988654 4478999999996533 24455689
Q ss_pred eEEEEcccccCC----------------ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecC
Q 008457 148 DIVTMVFVLSAV----------------SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRG 211 (564)
Q Consensus 148 D~V~~~~vl~~~----------------~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (564)
|+|+||=-+.-. ..-+...+++...++|||||.+.+.-..
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~------------------------ 172 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP------------------------ 172 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH------------------------
Confidence 999995433221 1224678899999999999999885211
Q ss_pred CCceeeccCHHHHHHHHHhCCCcEEEeeeeeccccc
Q 008457 212 DGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVEN 247 (564)
Q Consensus 212 ~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~ 247 (564)
-...++.+++.+.+|...++...+.....
T Consensus 173 -------erl~ei~~~l~~~~~~~k~i~~V~p~~~k 201 (248)
T COG4123 173 -------ERLAEIIELLKSYNLEPKRIQFVYPKIGK 201 (248)
T ss_pred -------HHHHHHHHHHHhcCCCceEEEEecCCCCC
Confidence 13567788999999999888777654433
No 149
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.22 E-value=4.6e-10 Score=106.68 Aligned_cols=176 Identities=15% Similarity=0.190 Sum_probs=112.3
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 358 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 358 W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
|.+...-.+ +..+...+.|++|||+|||.|..+..++..+++.|+++|.++..+-..+.--..-+. ...+..+.
T Consensus 98 WrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-----~~~~~~lp 171 (315)
T PF08003_consen 98 WRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-----DPPVFELP 171 (315)
T ss_pred ccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC-----CccEEEcC
Confidence 555544333 333333569999999999999988888888999999999987655443321111111 11222222
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCC------CCCCCcEEEEEEee----cc---
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSL------REDQQPAFILCHIF----RQ--- 504 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~------~~~~~~~~~~~~~~----r~--- 504 (564)
.+ ++.+.. .+.||+|++.-|+||..+.-..++.++..| +++|.- -+.....+++...+ ++
T Consensus 172 lg----vE~Lp~--~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L-~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~F 244 (315)
T PF08003_consen 172 LG----VEDLPN--LGAFDTVFSMGVLYHRRSPLDHLKQLKDSL-RPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWF 244 (315)
T ss_pred cc----hhhccc--cCCcCEEEEeeehhccCCHHHHHHHHHHhh-CCCCEEEEEEeeecCCCceEEccCCcccCCCceEE
Confidence 22 222212 468999999999999999999999999999 998731 01111222221111 11
Q ss_pred -CChhHHHHHHHHcCCeEEEEcCCCCCCCCccccccccccCCCC
Q 008457 505 -VDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGH 547 (564)
Q Consensus 505 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (564)
.+...+..+++++||+-+++..+...+..-|+-+. |+..+.+
T Consensus 245 iPs~~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR~T~-Wm~~~SL 287 (315)
T PF08003_consen 245 IPSVAALKNWLERAGFKDVRCVDVSPTTIEEQRKTD-WMDFQSL 287 (315)
T ss_pred eCCHHHHHHHHHHcCCceEEEecCccCCHHHhccCC-CcCcccH
Confidence 13356789999999999999888666665555443 7764443
No 150
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.22 E-value=1.6e-10 Score=113.68 Aligned_cols=101 Identities=20% Similarity=0.354 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.|+++..... ..+.+...+.. +..+++||+|+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~------~~~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE------QPIEGKADVIV 230 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc------cccCCCceEEE
Confidence 567999999999999998887653 4589999999999999998765433 23444444321 22467899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
++... +.+..++.++.++|||||.++++.+
T Consensus 231 an~~~-----~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 231 ANILA-----EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EecCH-----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 97643 3456789999999999999999754
No 151
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.22 E-value=4.2e-10 Score=114.70 Aligned_cols=174 Identities=18% Similarity=0.156 Sum_probs=113.7
Q ss_pred EEEEeCCceEEEEEecccccccCCCccceech-hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEc
Q 008457 328 IEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWE-SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 406 (564)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~-~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD 406 (564)
+.+..+|..+.+....+ ..||..+=. ..+..+.. ..++++|||||||||+++..++..++.+|+++|
T Consensus 183 ~~v~E~g~~f~vdl~~g------~ktG~flDqr~~R~~~~~------~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD 250 (396)
T PRK15128 183 LPIEEHGMKLLVDIQGG------HKTGYYLDQRDSRLATRR------YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVD 250 (396)
T ss_pred EEEEECCEEEEEecccc------cccCcChhhHHHHHHHHH------hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEE
Confidence 44666777777764333 356632221 11222221 236889999999999888777766677999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh--cCCCccEEEEeceeeCCC----------ChHHHH
Q 008457 407 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NNEGFEVILGTDVSYIPE----------AILPLF 474 (564)
Q Consensus 407 ~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~--~~~~fD~Ii~~d~~y~~~----------~~~~l~ 474 (564)
+|+.+++.+++|+..|++.. .++.+..-|.. +.+..+ ..++||+|+ .|+.|... .+..++
T Consensus 251 ~s~~al~~a~~N~~~Ngl~~--~~v~~i~~D~~-----~~l~~~~~~~~~fDlVi-lDPP~f~~~k~~l~~~~~~y~~l~ 322 (396)
T PRK15128 251 TSQEALDIARQNVELNKLDL--SKAEFVRDDVF-----KLLRTYRDRGEKFDVIV-MDPPKFVENKSQLMGACRGYKDIN 322 (396)
T ss_pred CCHHHHHHHHHHHHHcCCCC--CcEEEEEccHH-----HHHHHHHhcCCCCCEEE-ECCCCCCCChHHHHHHHHHHHHHH
Confidence 99999999999999998742 24555544432 222222 245899998 56555433 355666
Q ss_pred HHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHH----HHcCCeEEEEcCCCCC
Q 008457 475 ATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA----TQCGFRLVDKWPSKNS 530 (564)
Q Consensus 475 ~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~----~~~g~~~~~~~~~~~~ 530 (564)
....++| +++| .+++|......+.+.|.+.+ .+.|-++.-+...+.|
T Consensus 323 ~~a~~lL-k~gG--------~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~~~~ 373 (396)
T PRK15128 323 MLAIQLL-NPGG--------ILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQA 373 (396)
T ss_pred HHHHHHc-CCCe--------EEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEcCCC
Confidence 7778899 9988 88888777666666665544 4456666666544333
No 152
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.20 E-value=5.2e-10 Score=107.66 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=80.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
++.+|||+|||+|.++..++.... .+|+++|+++.+++.+++++..++.. ..+.+...+..+. +...+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~-------~~~~~ 120 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS---GNVEFVQGDAEAL-------PFPDN 120 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc---cCeEEEecccccC-------CCCCC
Confidence 678999999999988877777664 79999999999999999998765442 3456665555432 12346
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.||+|+++-++.+......+++.+.++| +++|
T Consensus 121 ~~D~I~~~~~l~~~~~~~~~l~~~~~~L-~~gG 152 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDIDKALREMYRVL-KPGG 152 (239)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHhc-cCCc
Confidence 8999999888888889999999999999 9988
No 153
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=6.2e-10 Score=97.87 Aligned_cols=125 Identities=20% Similarity=0.169 Sum_probs=85.0
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
...++++|+|||||||.++..++..++.+|+++|+++++++.+++|+.... +.+.+..-|-.+. .
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-----g~v~f~~~dv~~~----------~ 106 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-----GDVEFVVADVSDF----------R 106 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-----CceEEEEcchhhc----------C
Confidence 456899999999999999988888999999999999999999999999832 5566665554332 4
Q ss_pred CCccEEEEeceeeCCCCh--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHH-HHHHHcCCeEEEEcCC
Q 008457 453 EGFEVILGTDVSYIPEAI--LPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML-SAATQCGFRLVDKWPS 527 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~--~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~g~~~~~~~~~ 527 (564)
+++|.+|++...=.+.-+ -+++....++. . ++|-.+.. ...+|. ......|+.+.++++.
T Consensus 107 ~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s----~--------vVYsiH~a---~~~~f~~~~~~~~G~~v~~~~~~ 169 (198)
T COG2263 107 GKFDTVIMNPPFGSQRRHADRPFLLKALEIS----D--------VVYSIHKA---GSRDFVEKFAADLGGTVTHIERA 169 (198)
T ss_pred CccceEEECCCCccccccCCHHHHHHHHHhh----h--------eEEEeecc---ccHHHHHHHHHhcCCeEEEEEEE
Confidence 589988876543222211 22233333333 1 44443332 233554 4456789999998755
No 154
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3.9e-10 Score=109.75 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=91.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
+.+..|.+.+......... +|||||||||.+++.++.... .+|+++|+|+.+++.+++|+..|++ .++.....|
T Consensus 94 ~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l----~~~~~~~~d 168 (280)
T COG2890 94 PDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL----VRVLVVQSD 168 (280)
T ss_pred CchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC----ccEEEEeee
Confidence 4455556654421111111 899999999988888887765 4999999999999999999999997 233333337
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeCCC-------------------------ChHHHHHHHHHHhhccCCCCCCCC
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIPE-------------------------AILPLFATAKELTASSNKSLREDQ 492 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~-------------------------~~~~l~~~~~~ll~~~~g~~~~~~ 492 (564)
|... ..++||+||++...-..+ .+..++..+...| +++|
T Consensus 169 lf~~---------~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l-~~~g------ 232 (280)
T COG2890 169 LFEP---------LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDIL-KPGG------ 232 (280)
T ss_pred cccc---------cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHc-CCCc------
Confidence 7643 234999999774322111 3556677777788 7765
Q ss_pred CcEEEEEEeeccCChhHHHHHHHHcC-CeEEEE
Q 008457 493 QPAFILCHIFRQVDEPSMLSAATQCG-FRLVDK 524 (564)
Q Consensus 493 ~~~~~~~~~~r~~~~~~~~~~~~~~g-~~~~~~ 524 (564)
.+++-... .. ...+.+.+.+.| |.....
T Consensus 233 --~l~le~g~-~q-~~~v~~~~~~~~~~~~v~~ 261 (280)
T COG2890 233 --VLILEIGL-TQ-GEAVKALFEDTGFFEIVET 261 (280)
T ss_pred --EEEEEECC-Cc-HHHHHHHHHhcCCceEEEE
Confidence 44443222 22 335677777888 444443
No 155
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.19 E-value=8e-11 Score=99.68 Aligned_cols=107 Identities=23% Similarity=0.327 Sum_probs=84.9
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
|.+|||+|||+|.++..+++.+ ..+++|+|+++..++.|+.+..... .+++++++|+.... ..+++++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhccCceeEEEEEC
Confidence 4689999999999999999996 6899999999999999998876543 57999999986543 24578999999997
Q ss_pred ccccCCC------hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 154 FVLSAVS------PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 154 ~vl~~~~------~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
--+.... .+....+++++.++|||||.+++..
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7554321 1245789999999999999998864
No 156
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.19 E-value=1.4e-10 Score=108.01 Aligned_cols=128 Identities=13% Similarity=0.012 Sum_probs=93.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh-hhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~-~~~~~ 453 (564)
.+.+|||||||+|.++..++... ..+|+++|+++.+++.+++|+..++. .++.+...|+. +.+. .+.++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~----~~v~~~~~d~~-----~~l~~~~~~~ 110 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL----TNLRLLCGDAV-----EVLLDMFPDG 110 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC----CCEEEEecCHH-----HHHHHHcCcc
Confidence 56799999999998877776654 45899999999999999999988765 34666555441 1121 14567
Q ss_pred CccEEEEecee-eCC-------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEE
Q 008457 454 GFEVILGTDVS-YIP-------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV 522 (564)
Q Consensus 454 ~fD~Ii~~d~~-y~~-------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~ 522 (564)
+||+|++.-+. +.. ...+.+++.+.++| +|+| .++++...+.... .+++.+.+.|+.+.
T Consensus 111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~L-kpgG--------~l~i~~~~~~~~~-~~~~~~~~~g~~~~ 177 (202)
T PRK00121 111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKL-KPGG--------EIHFATDWEGYAE-YMLEVLSAEGGFLV 177 (202)
T ss_pred ccceEEEECCCCCCCccccccccCCHHHHHHHHHHc-CCCC--------EEEEEcCCHHHHH-HHHHHHHhCccccc
Confidence 89999875321 111 12578999999999 9988 8888765544332 57888889998877
No 157
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.19 E-value=1.6e-10 Score=116.16 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=84.2
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCcee
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
.....++.+|||+|||+|.++..++.. +.+++|+|+++.|+..|+.+....+ .++.+.++|+... ++++++||
T Consensus 177 l~~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l----~~~~~~~D 250 (329)
T TIGR01177 177 LARVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL----PLSSESVD 250 (329)
T ss_pred HhCCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC----CcccCCCC
Confidence 334467889999999999998877665 7899999999999999988765433 3478888998653 34578999
Q ss_pred EEEEccccc-------CCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 149 IVTMVFVLS-------AVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 149 ~V~~~~vl~-------~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+|+++--.. +...+....++.++.++|||||++++..+
T Consensus 251 ~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 251 AIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred EEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 999963221 11113367899999999999999988643
No 158
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.18 E-value=6.8e-10 Score=103.27 Aligned_cols=137 Identities=19% Similarity=0.208 Sum_probs=94.9
Q ss_pred CCCCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh
Q 008457 372 PTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE 449 (564)
Q Consensus 372 ~~~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~ 449 (564)
..+.++.+|||+|||+|.++..++.. ...+|+++|.++.+++.+++|+..+++. .++.+...|..+ .+ +
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~---~~v~~~~~d~~~-----~l-~ 106 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL---NNIVLIKGEAPE-----IL-F 106 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC---CCeEEEEechhh-----hH-h
Confidence 35568899999999999888777654 2468999999999999999999988743 345554443321 11 1
Q ss_pred hcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCCCC
Q 008457 450 ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKN 529 (564)
Q Consensus 450 ~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 529 (564)
...++||.|++.- ....+..+++.+.++| +|+| ++++. ..+-.......+.+++.||.+ ++.+...
T Consensus 107 ~~~~~~D~V~~~~---~~~~~~~~l~~~~~~L-kpgG--------~lv~~-~~~~~~~~~~~~~l~~~g~~~-~~~~~~~ 172 (198)
T PRK00377 107 TINEKFDRIFIGG---GSEKLKEIISASWEII-KKGG--------RIVID-AILLETVNNALSALENIGFNL-EITEVII 172 (198)
T ss_pred hcCCCCCEEEECC---CcccHHHHHHHHHHHc-CCCc--------EEEEE-eecHHHHHHHHHHHHHcCCCe-EEEEEeh
Confidence 1235899998632 3456788999999999 9988 66653 333333456778888899854 4443433
Q ss_pred CC
Q 008457 530 SA 531 (564)
Q Consensus 530 ~~ 531 (564)
+.
T Consensus 173 ~~ 174 (198)
T PRK00377 173 AK 174 (198)
T ss_pred hh
Confidence 33
No 159
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.18 E-value=2.7e-10 Score=105.48 Aligned_cols=98 Identities=22% Similarity=0.240 Sum_probs=75.2
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..+++. +.....+.... ++ +.
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~-----v~~~~~d~~~~-------~~-~~ 93 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLP-----LRTDAYDINAA-------AL-NE 93 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCC-----ceeEeccchhc-------cc-cC
Confidence 3456799999999998887777654 58999999999999999988877652 33333333211 11 34
Q ss_pred CccEEEEeceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 454 GFEVILGTDVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
+||+|+++.++++. ...+.+++.+.++| +|+|
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG 127 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHT-RPGG 127 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCc
Confidence 79999999887654 46789999999999 9988
No 160
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.17 E-value=9.5e-10 Score=105.75 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=96.7
Q ss_pred hHHHHHHHHhcCCC-CCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 360 SAHLMAAVLARNPT-IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 360 ~~~~l~~~l~~~~~-~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
.+..|.+.+..... .....+|||||||+|.++..++... ..+|+++|+|+.+++.+++|+..|+. ++..-|
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~-------~~~~~D 141 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG-------TVHEGD 141 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------EEEEee
Confidence 34555655544221 1234589999999998888877654 45899999999999999999988752 344445
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeCCC---------------------------ChHHHHHHHHHHhhccCCCCCC
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIPE---------------------------AILPLFATAKELTASSNKSLRE 490 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------------------~~~~l~~~~~~ll~~~~g~~~~ 490 (564)
+.+. . .....++||+|+++. .|.+. .+..+++.+.++| +|+|
T Consensus 142 ~~~~--l---~~~~~~~fDlVv~NP-Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L-~~gG---- 210 (251)
T TIGR03704 142 LYDA--L---PTALRGRVDILAANA-PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL-APGG---- 210 (251)
T ss_pred chhh--c---chhcCCCEeEEEECC-CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc-CCCC----
Confidence 4321 1 011135799988654 44321 1347888888999 9988
Q ss_pred CCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 491 DQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 491 ~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+++.+...+ ...+...+.+.||+..-+.
T Consensus 211 ----~l~l~~~~~~--~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 211 ----HLLVETSERQ--APLAVEAFARAGLIARVAS 239 (251)
T ss_pred ----EEEEEECcch--HHHHHHHHHHCCCCceeeE
Confidence 8887766544 3468888889999887654
No 161
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.17 E-value=8.8e-10 Score=105.56 Aligned_cols=141 Identities=14% Similarity=0.177 Sum_probs=103.8
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.+|+.......++.+|||||||+|.++..++.. ..+|+++|.++.+++.+++|+..++. .+.+...++...
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--- 107 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL-----KIDYRQTTAEEL--- 107 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC-----ceEEEecCHHHh---
Confidence 456665554567889999999999777666654 46899999999999999999876553 234443333221
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc--------------------
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------- 504 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-------------------- 504 (564)
.....++||+|+++.++.+......+++.+.++| +++| .++++...+.
T Consensus 108 ---~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L-~~gG--------~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (233)
T PRK05134 108 ---AAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLV-KPGG--------LVFFSTLNRNLKSYLLAIVGAEYVLRMLPK 175 (233)
T ss_pred ---hhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHc-CCCc--------EEEEEecCCChHHHHHHHhhHHHHhhhcCc
Confidence 1123468999999999999999999999999999 9988 6776643211
Q ss_pred --------CChhHHHHHHHHcCCeEEEEcC
Q 008457 505 --------VDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 505 --------~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
.+..++.+.+.+.||++.+...
T Consensus 176 ~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 176 GTHDYKKFIKPSELAAWLRQAGLEVQDITG 205 (233)
T ss_pred ccCchhhcCCHHHHHHHHHHCCCeEeeeee
Confidence 1224577788899999998863
No 162
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.16 E-value=5.1e-10 Score=103.28 Aligned_cols=105 Identities=20% Similarity=0.260 Sum_probs=76.5
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc----cCCCCCCc
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL----SRQISPSS 146 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~~ 146 (564)
...++.+|||+|||+|.++..+++.. +..+|+++|+|+.+ . ..++.+++.|+..... ...++.++
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~----~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P----IENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c----CCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 34788999999999999999988875 45689999999864 1 1357888888765321 01235678
Q ss_pred eeEEEEccccc--------CC-ChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 147 IDIVTMVFVLS--------AV-SPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 147 fD~V~~~~vl~--------~~-~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
||+|++....+ |. +.+....++.++.++|+|||.+++..+
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 99999965322 11 112357899999999999999998643
No 163
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.15 E-value=2.7e-10 Score=107.30 Aligned_cols=108 Identities=14% Similarity=0.054 Sum_probs=83.5
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~ 143 (564)
..+.+.+...++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|+++....+ .++.+..+|.... +. +
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~---~ 141 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG-WP---A 141 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC-CC---c
Confidence 344556666788999999999999998888773 489999999999999998765433 4588888887432 11 3
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
.++||+|++...+++++ +.+.+.|+|||.+++...
T Consensus 142 ~~~fD~I~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 YAPFDRILVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCcCEEEEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 47899999988766652 456789999999998654
No 164
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.15 E-value=1.5e-10 Score=109.08 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=94.8
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-------CCCeeEEEecCC
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-------ETRVSTFVCDLI 134 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-------~~~i~~~~~d~~ 134 (564)
|+...++.... .++..++|+|||-|..+...-+.. -.+++|+|++...++.|+++.... .-.+.|+++|..
T Consensus 105 wIKs~LI~~y~-~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~ 182 (389)
T KOG1975|consen 105 WIKSVLINLYT-KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF 182 (389)
T ss_pred HHHHHHHHHHh-ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence 44444444333 678999999999999887776663 347999999999999999875421 124678899987
Q ss_pred cccccC--CCCCCceeEEEEcccccCC--ChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 135 SDDLSR--QISPSSIDIVTMVFVLSAV--SPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 135 ~~~~~~--~~~~~~fD~V~~~~vl~~~--~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
...+.. ++++.+||+|-|.+++|+- +.+..+.+|.++.+.|||||+++-+.+.
T Consensus 183 ~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 183 KERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred hhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 665533 2355569999999999954 5778889999999999999999987654
No 165
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.15 E-value=3.3e-10 Score=105.25 Aligned_cols=114 Identities=18% Similarity=0.091 Sum_probs=84.9
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~ 143 (564)
..+.+.+...++.+|||+|||+|.++..+++..++.+|+++|+|+.+++.++++....+ .+++++.+|+... + +..
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~-~--~~~ 106 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC-L--AQL 106 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH-H--hhC
Confidence 33455566578899999999999999999887778899999999999999998765433 4688888887431 1 111
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
...+|.++... . .....+++++.+.|+|||.+++....
T Consensus 107 ~~~~d~v~~~~----~--~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 107 APAPDRVCIEG----G--RPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCCCEEEEEC----C--cCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 22356665422 1 34678999999999999999987543
No 166
>PRK08317 hypothetical protein; Provisional
Probab=99.15 E-value=1.2e-09 Score=105.08 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=83.2
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
.-+.+.....+.++.+|||+|||+|.++..++... ..+|+++|+++.+++.++++..... ..+.+...|....
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~ 81 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG-----PNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC-----CceEEEecccccC
Confidence 33444454556678899999999998777776654 4689999999999999998833211 3455555444322
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
++..++||+|++..++.+..+...+++.+.++| +|+|
T Consensus 82 -------~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L-~~gG 118 (241)
T PRK08317 82 -------PFPDGSFDAVRSDRVLQHLEDPARALAEIARVL-RPGG 118 (241)
T ss_pred -------CCCCCCceEEEEechhhccCCHHHHHHHHHHHh-cCCc
Confidence 234568999999999999889999999999999 9988
No 167
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.15 E-value=1.1e-09 Score=98.18 Aligned_cols=130 Identities=16% Similarity=0.264 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
++...|.|+|||.+.++..+.+ +.+|...|+-+. +-.+..+|+... |++++++|+++++
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~--------------n~~Vtacdia~v----PL~~~svDv~Vfc 129 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP--------------NPRVTACDIANV----PLEDESVDVAVFC 129 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S------EEEEESS-S--------------STTEEES-TTS-----S--TT-EEEEEEE
T ss_pred CCCEEEEECCCchHHHHHhccc---CceEEEeeccCC--------------CCCEEEecCccC----cCCCCceeEEEEE
Confidence 4568999999999998865432 467999998541 224667898543 6789999999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
..|+-. +...++.++.|+|||||.|.|.+... + +-+.+.+.+.++..||
T Consensus 130 LSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~S------R----------------------f~~~~~F~~~~~~~GF 178 (219)
T PF05148_consen 130 LSLMGT---NWPDFIREANRVLKPGGILKIAEVKS------R----------------------FENVKQFIKALKKLGF 178 (219)
T ss_dssp S---SS----HHHHHHHHHHHEEEEEEEEEEEEGG------G-----------------------S-HHHHHHHHHCTTE
T ss_pred hhhhCC---CcHHHHHHHHheeccCcEEEEEEecc------c----------------------CcCHHHHHHHHHHCCC
Confidence 998876 78899999999999999999987542 1 1257888899999999
Q ss_pred cEEEeeeeeccccccccccccceeEEEEEEEecCC
Q 008457 234 DVEELGLCCKQVENRARELVMNRRWVQAVFCSSGG 268 (564)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 268 (564)
+........ ..|+...|.|...
T Consensus 179 ~~~~~d~~n-------------~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 179 KLKSKDESN-------------KHFVLFEFKKIRK 200 (219)
T ss_dssp EEEEEE--S-------------TTEEEEEEEE-SS
T ss_pred eEEecccCC-------------CeEEEEEEEEcCc
Confidence 987643322 2355566776663
No 168
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.14 E-value=3.5e-10 Score=100.79 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=90.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
.-.++||+|||.|.++..++.. +.+++++|+++.+++.+++.+.. . ..|.+...+.... .+.++|
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~----~~V~~~~~dvp~~--------~P~~~F 107 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--L----PHVEWIQADVPEF--------WPEGRF 107 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----------SS-E
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--C----CCeEEEECcCCCC--------CCCCCe
Confidence 4468999999999888887665 57899999999999999998753 1 4577776665432 367899
Q ss_pred cEEEEeceeeCCCC---hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------cCChhHHHHHHHHcCCeEEEE
Q 008457 456 EVILGTDVSYIPEA---ILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------QVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 456 D~Ii~~d~~y~~~~---~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--------~~~~~~~~~~~~~~g~~~~~~ 524 (564)
|+|+.++++|+-.. +..+++.+...| +|+| .+++++.+. ..+.....+++.+.=.+|+.+
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L-~pgG--------~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~ 178 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAAL-APGG--------HLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERV 178 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTE-EEEE--------EEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEE
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHh-CCCC--------EEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEE
Confidence 99999999999765 456778888888 9988 888888763 123345667777766677766
Q ss_pred cCCCCCCC
Q 008457 525 WPSKNSAS 532 (564)
Q Consensus 525 ~~~~~~~~ 532 (564)
.-.+.+.+
T Consensus 179 ~~~~~~~~ 186 (201)
T PF05401_consen 179 ECRGGSPN 186 (201)
T ss_dssp EEE-SSTT
T ss_pred EEcCCCCC
Confidence 43333333
No 169
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.14 E-value=8.3e-10 Score=110.76 Aligned_cols=179 Identities=19% Similarity=0.183 Sum_probs=123.7
Q ss_pred EEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEc
Q 008457 327 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 406 (564)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD 406 (564)
.+.+...|..+.+..... ..||+-++ -+..-.++... .+|++||+|-|-||+++..++..++++||.+|
T Consensus 179 ~~~i~E~g~kf~v~~~~g------~kTGfFlD--qR~~R~~l~~~---~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD 247 (393)
T COG1092 179 EVVIEENGVKFLVDLVDG------LKTGFFLD--QRDNRRALGEL---AAGKRVLNLFSYTGGFSVHAALGGASEVTSVD 247 (393)
T ss_pred cEEEEeCCeEEEEecCCc------ccceeeHH--hHHHHHHHhhh---ccCCeEEEecccCcHHHHHHHhcCCCceEEEe
Confidence 445555666676654333 47885444 33333333322 36999999999999999988888888999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh--cCCCccEEEEeceeeC---------CCChHHHHH
Q 008457 407 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NNEGFEVILGTDVSYI---------PEAILPLFA 475 (564)
Q Consensus 407 ~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~--~~~~fD~Ii~~d~~y~---------~~~~~~l~~ 475 (564)
.|..+++.+++|+++|++... + .+|-..+.++.+... ...+||+||.=.+-|. ..++..|+.
T Consensus 248 ~S~~al~~a~~N~~LNg~~~~--~-----~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~ 320 (393)
T COG1092 248 LSKRALEWARENAELNGLDGD--R-----HRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLND 320 (393)
T ss_pred ccHHHHHHHHHHHHhcCCCcc--c-----eeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHH
Confidence 999999999999999998642 2 233333445444432 3459999996544443 237889999
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHH----HHcCCeEEEEc-CCCCCCC
Q 008457 476 TAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA----TQCGFRLVDKW-PSKNSAS 532 (564)
Q Consensus 476 ~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~----~~~g~~~~~~~-~~~~~~~ 532 (564)
.+.++| +|+| .+++|...+..+.+.|.+.+ ...|..+..+. ..++++.
T Consensus 321 ~~~~iL-~pgG--------~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~ 373 (393)
T COG1092 321 LALRLL-APGG--------TLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIEGEGQPPDH 373 (393)
T ss_pred HHHHHc-CCCC--------EEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEeeccCCCCCc
Confidence 999999 9988 88888888888876665444 44566666663 3334433
No 170
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.14 E-value=2e-09 Score=108.30 Aligned_cols=144 Identities=19% Similarity=0.259 Sum_probs=100.3
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEE
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~ 435 (564)
.=+.+..+.+.+..... ++.+|||||||+|.++..++.. ...+|+++|+|+.+++.+++|+..++. ++.+..
T Consensus 234 PRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-----rV~fi~ 306 (423)
T PRK14966 234 PRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-----RVEFAH 306 (423)
T ss_pred CCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----cEEEEE
Confidence 33556677777765432 5569999999999888777654 456999999999999999999988753 467777
Q ss_pred eecCCCccchhhhhhcCCCccEEEEeceeeCCC--------------------------ChHHHHHHHHHHhhccCCCCC
Q 008457 436 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--------------------------AILPLFATAKELTASSNKSLR 489 (564)
Q Consensus 436 l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~l~~~~~~ll~~~~g~~~ 489 (564)
.||.+... + ..++||+|+++. .|... .+..+++.+.+.| +|+|
T Consensus 307 gDl~e~~l-----~-~~~~FDLIVSNP-PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L-kpgG--- 375 (423)
T PRK14966 307 GSWFDTDM-----P-SEGKWDIIVSNP-PYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRL-AEGG--- 375 (423)
T ss_pred cchhcccc-----c-cCCCccEEEECC-CCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhc-CCCc---
Confidence 77754311 0 134799999765 34221 2346777778899 9987
Q ss_pred CCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 490 EDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 490 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+++..... ....+.+.+.+.||...++.
T Consensus 376 -----~lilEiG~~--Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 376 -----FLLLEHGFD--QGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred -----EEEEEECcc--HHHHHHHHHHHCCCcEEEEE
Confidence 665543332 23357777888899876664
No 171
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.14 E-value=5.6e-10 Score=102.72 Aligned_cols=109 Identities=8% Similarity=0.030 Sum_probs=81.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..+.+|||||||+|.++..+++.++.+|+++|.++.+++.+++|++.++.. ++.+..-|+.+ .+ .....+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~----~v~~~~~D~~~-----~l-~~~~~~ 121 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG----NARVVNTNALS-----FL-AQPGTP 121 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC----cEEEEEchHHH-----HH-hhcCCC
Confidence 367799999999998888777777889999999999999999999998762 46665554422 11 112347
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHH--hhccCCCCCCCCCcEEEEEEeec
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKEL--TASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~l--l~~~~g~~~~~~~~~~~~~~~~r 503 (564)
||+|+ +|..|.....+.+++.+... | .+++ .+|+.+..+
T Consensus 122 fDlV~-~DPPy~~g~~~~~l~~l~~~~~l-~~~~--------iv~ve~~~~ 162 (199)
T PRK10909 122 HNVVF-VDPPFRKGLLEETINLLEDNGWL-ADEA--------LIYVESEVE 162 (199)
T ss_pred ceEEE-ECCCCCCChHHHHHHHHHHCCCc-CCCc--------EEEEEecCC
Confidence 99987 56678887788888877763 6 6655 777776654
No 172
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.14 E-value=1.1e-09 Score=103.82 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=89.8
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..++.+|||+|||+|.++..++.. ..+|+++|+++++++.+++++..++.. .++.+...|+.+. . +
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~---~~i~~~~~d~~~~---------~-~ 118 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVA---GNVEFEVNDLLSL---------C-G 118 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECChhhC---------C-C
Confidence 457889999999999777777665 458999999999999999998776542 3455555544322 2 5
Q ss_pred CccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-----------------------ccCChh
Q 008457 454 GFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIF-----------------------RQVDEP 508 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-----------------------r~~~~~ 508 (564)
+||+|++++++++. .....+++.+.+++ +++ .++.+... +..+..
T Consensus 119 ~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~-~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
T TIGR02021 119 EFDIVVCMDVLIHYPASDMAKALGHLASLT-KER---------VIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMT 188 (219)
T ss_pred CcCEEEEhhHHHhCCHHHHHHHHHHHHHHh-CCC---------EEEEECCCchHHHHHHHHHhhCcCcccccceEEecHH
Confidence 89999999998664 34667778887777 542 22222111 011334
Q ss_pred HHHHHHHHcCCeEEEEc
Q 008457 509 SMLSAATQCGFRLVDKW 525 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~~ 525 (564)
.+.+.+.+.||++...-
T Consensus 189 ~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 189 DLERALGELGWKIVREG 205 (219)
T ss_pred HHHHHHHHcCceeeeee
Confidence 67788888899998775
No 173
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.1e-10 Score=101.93 Aligned_cols=113 Identities=14% Similarity=0.059 Sum_probs=92.7
Q ss_pred cchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccc
Q 008457 60 RHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDL 138 (564)
Q Consensus 60 ~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~ 138 (564)
..++...+.+.+...++.+|||||||+|+.+..|++. ..+|+.+|..+...+.|+++....+ .|+.+.++|...- +
T Consensus 57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G-~ 133 (209)
T COG2518 57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG-W 133 (209)
T ss_pred CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC-C
Confidence 3356667778888899999999999999999999998 4599999999999999999887655 4799999998642 2
Q ss_pred cCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 139 ~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+ +...||.|++......+|. .+.+.||+||++++-.-
T Consensus 134 ~---~~aPyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 P---EEAPYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred C---CCCCcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 1 3478999999998888862 25677899999998543
No 174
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.13 E-value=8.6e-10 Score=106.86 Aligned_cols=110 Identities=14% Similarity=0.019 Sum_probs=79.9
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
++.+.+.....++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.++++... ..+...|....
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~~---------~~~~~~d~~~~--- 97 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDAA---------DHYLAGDIESL--- 97 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCCC---------CCEEEcCcccC---
Confidence 344443333335679999999999777666554 46899999999999999887421 12222232211
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
++.+++||+|+++.++.+..+...+++.+.++| +|+| .++++.
T Consensus 98 ----~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~L-k~gG--------~l~~~~ 140 (251)
T PRK10258 98 ----PLATATFDLAWSNLAVQWCGNLSTALRELYRVV-RPGG--------VVAFTT 140 (251)
T ss_pred ----cCCCCcEEEEEECchhhhcCCHHHHHHHHHHHc-CCCe--------EEEEEe
Confidence 234568999999998888889999999999999 9988 777664
No 175
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.12 E-value=9.3e-10 Score=95.21 Aligned_cols=153 Identities=14% Similarity=0.249 Sum_probs=107.1
Q ss_pred CCccceec---hhHHHHHHHHhcCCC---CCCCC-eEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhc
Q 008457 351 RSTGLMLW---ESAHLMAAVLARNPT---IVAGK-KVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTAN 422 (564)
Q Consensus 351 ~~~G~~~W---~~~~~l~~~l~~~~~---~~~~~-~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n 422 (564)
++.| -+| ++...+.+|+..+-. ..+.. +|||||||.|.+-.-++..+ ....+++|+++.++++|+.-++.+
T Consensus 36 gd~G-EvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~ 114 (227)
T KOG1271|consen 36 GDEG-EVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD 114 (227)
T ss_pred CCcc-ceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc
Confidence 4555 355 445678899887643 23334 99999999997766666665 346999999999999988887888
Q ss_pred CCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEe---ceeeC-----CCChHHHHHHHHHHhhccCCCCCCCCCc
Q 008457 423 LKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGT---DVSYI-----PEAILPLFATAKELTASSNKSLREDQQP 494 (564)
Q Consensus 423 ~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~---d~~y~-----~~~~~~l~~~~~~ll~~~~g~~~~~~~~ 494 (564)
+.+ +.|++.++|..+++ ...++||+|+-- |.+-- ..-+..-+..+.++| +|+|
T Consensus 115 ~~~---n~I~f~q~DI~~~~-------~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll-~~~g-------- 175 (227)
T KOG1271|consen 115 GFS---NEIRFQQLDITDPD-------FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLL-SPGG-------- 175 (227)
T ss_pred CCC---cceeEEEeeccCCc-------ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhcc-CCCc--------
Confidence 775 55999999987652 245689988822 22211 112245578999999 9988
Q ss_pred EEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 495 AFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 495 ~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.|+++.- +.+.+++.+.....||.+..-.
T Consensus 176 ifvItSC--N~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 176 IFVITSC--NFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred EEEEEec--CccHHHHHHHHhcCCeEEEEee
Confidence 8888644 4455667887777777765543
No 176
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.11 E-value=6.3e-10 Score=103.38 Aligned_cols=146 Identities=25% Similarity=0.302 Sum_probs=94.7
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
...++||||+|.|..+..++..+ .+|++.|.|+.|....+++. |.+.+..+.. -.+.+||+|.|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~kg--------~~vl~~~~w~----~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKKG--------FTVLDIDDWQ----QTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhCC--------CeEEehhhhh----ccCCceEEEeehh
Confidence 56789999999999999999885 45999999999988877652 2222322111 1346899999999
Q ss_pred cccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCc
Q 008457 155 VLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFD 234 (564)
Q Consensus 155 vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 234 (564)
+|..- ++|..+|+++++.|+|+|.+++....+....-+.-........+..-. .+ ..+--..+.+.+.|+.+||+
T Consensus 160 vLDRc--~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~--~g-~~~E~~v~~l~~v~~p~GF~ 234 (265)
T PF05219_consen 160 VLDRC--DRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPV--KG-ATFEEQVSSLVNVFEPAGFE 234 (265)
T ss_pred hhhcc--CCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCC--CC-CcHHHHHHHHHHHHHhcCCE
Confidence 99876 588999999999999999999965443221100000000000000000 01 11111234455899999999
Q ss_pred EEEee
Q 008457 235 VEELG 239 (564)
Q Consensus 235 ~~~~~ 239 (564)
++...
T Consensus 235 v~~~t 239 (265)
T PF05219_consen 235 VERWT 239 (265)
T ss_pred EEEEe
Confidence 97643
No 177
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.11 E-value=7.4e-10 Score=98.64 Aligned_cols=124 Identities=10% Similarity=0.116 Sum_probs=94.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||||||.|.+...+......+..++|++++.+..+.++ + +.+.+.|..+ .+..+++++|
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G-------v~Viq~Dld~-----gL~~f~d~sF 76 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G-------VSVIQGDLDE-----GLADFPDQSF 76 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C-------CCEEECCHHH-----hHhhCCCCCc
Confidence 6789999999999887777776677899999999877655443 3 3455555443 3446788999
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--------------------------------c
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF--------------------------------R 503 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~--------------------------------r 503 (564)
|+||.++++-.......+++.+.|+- + .++++++. |
T Consensus 77 D~VIlsqtLQ~~~~P~~vL~EmlRVg-r-----------~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih 144 (193)
T PF07021_consen 77 DYVILSQTLQAVRRPDEVLEEMLRVG-R-----------RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIH 144 (193)
T ss_pred cEEehHhHHHhHhHHHHHHHHHHHhc-C-----------eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcc
Confidence 99999999999888888888886665 3 45555554 2
Q ss_pred cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
-.+..+|.+.|++.|+++++..-.
T Consensus 145 ~~Ti~DFe~lc~~~~i~I~~~~~~ 168 (193)
T PF07021_consen 145 LCTIKDFEDLCRELGIRIEERVFL 168 (193)
T ss_pred cccHHHHHHHHHHCCCEEEEEEEE
Confidence 334578999999999999998644
No 178
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.11 E-value=7.2e-10 Score=91.06 Aligned_cols=102 Identities=25% Similarity=0.376 Sum_probs=82.5
Q ss_pred eEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcc-cccCCCeeEEEecCCcccccCCCCCCceeEEEEcccc
Q 008457 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK-DFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVL 156 (564)
Q Consensus 78 ~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl 156 (564)
+|+|+|||.|.++..+++ .+..+++++|+++.+++.+++.. .....++++...|+..... ...++||+|+++.++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP---EADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc---ccCCceEEEEEccce
Confidence 589999999999998887 45789999999999999888322 2233568888888865322 245789999999999
Q ss_pred cCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 157 SAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 157 ~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+++ ......+++.+.+.|+|||.+++.
T Consensus 77 ~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 884 268889999999999999999875
No 179
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.10 E-value=5.8e-10 Score=105.58 Aligned_cols=123 Identities=11% Similarity=0.141 Sum_probs=78.6
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 433 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~ 433 (564)
..|.. .+.+.+ ...++.+|||+|||||-++..++... ..+|+++|+|+.|++.+++.+...+. .++..
T Consensus 33 ~~wr~--~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~----~~i~~ 102 (233)
T PF01209_consen 33 RRWRR--KLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL----QNIEF 102 (233)
T ss_dssp ----S--HHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEE
T ss_pred HHHHH--HHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC----CCeeE
Confidence 45666 333443 23367899999999997777676643 35999999999999999999887654 25555
Q ss_pred EEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc
Q 008457 434 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 434 ~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
...|-.+- ++++++||+|+++=.+.+..+....++.+.++| +|+| ++.+.-..+.
T Consensus 103 v~~da~~l-------p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVL-kPGG--------~l~ile~~~p 157 (233)
T PF01209_consen 103 VQGDAEDL-------PFPDNSFDAVTCSFGLRNFPDRERALREMYRVL-KPGG--------RLVILEFSKP 157 (233)
T ss_dssp EE-BTTB---------S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHE-EEEE--------EEEEEEEEB-
T ss_pred EEcCHHHh-------cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHc-CCCe--------EEEEeeccCC
Confidence 54443321 467789999999988989899999999999999 9988 6555544443
No 180
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=4e-09 Score=109.79 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=88.5
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCcee
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+...++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++....+.++.+.++|+..... .+..++||
T Consensus 238 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~--~~~~~~fD 315 (427)
T PRK10901 238 TLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ--WWDGQPFD 315 (427)
T ss_pred HHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh--hcccCCCC
Confidence 3455678999999999999999999998766799999999999999998877655567888888864211 12456899
Q ss_pred EEEEccc------ccC-------CChh-------HHHHHHHHHHhccCCCeEEEEEecC
Q 008457 149 IVTMVFV------LSA-------VSPE-------KMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 149 ~V~~~~v------l~~-------~~~~-------~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.|++..- +.+ ...+ ....+|..+.++|||||.+++++-.
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9996331 111 1111 2357899999999999999987643
No 181
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.09 E-value=2.5e-09 Score=101.84 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=96.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..+.+|||+|||+|.++..++..+ .+|+++|.++.+++.+++++..++.. .+.+...+..+. ....+++
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~----~~~~~~~d~~~~------~~~~~~~ 112 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPLL----KIEYRCTSVEDL------AEKGAKS 112 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEeCCHHHh------hcCCCCC
Confidence 468899999999997777666544 46999999999999999998876541 244433332211 1112368
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc----------------------------CC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------------VD 506 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~----------------------------~~ 506 (564)
||+|++..++.+......+++.+.++| +++| .++++...+. .+
T Consensus 113 ~D~i~~~~~l~~~~~~~~~l~~~~~~L-~~gG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (224)
T TIGR01983 113 FDVVTCMEVLEHVPDPQAFIRACAQLL-KPGG--------ILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIK 183 (224)
T ss_pred ccEEEehhHHHhCCCHHHHHHHHHHhc-CCCc--------EEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCC
Confidence 999999999999999999999999999 9987 6665542111 12
Q ss_pred hhHHHHHHHHcCCeEEEEcC
Q 008457 507 EPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 507 ~~~~~~~~~~~g~~~~~~~~ 526 (564)
...+.+.+.+.||++.++..
T Consensus 184 ~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 184 PSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred HHHHHHHHHHcCCeeeeeee
Confidence 23567788899999998763
No 182
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.09 E-value=2.9e-09 Score=91.03 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=79.6
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccch
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE 445 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~ 445 (564)
++.......++.+|||||||+|.++..++... ..+|+++|+++.+++.+++|+..++.. ++.+...+.... .
T Consensus 10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~--~- 82 (124)
T TIGR02469 10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS----NIVIVEGDAPEA--L- 82 (124)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC----ceEEEecccccc--C-
Confidence 33343344567899999999998888787764 469999999999999999999887652 344443332210 0
Q ss_pred hhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 446 AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 446 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
.....+||+|++... ......+++.+.++| +|+| .+++..
T Consensus 83 ---~~~~~~~D~v~~~~~---~~~~~~~l~~~~~~L-k~gG--------~li~~~ 122 (124)
T TIGR02469 83 ---EDSLPEPDRVFIGGS---GGLLQEILEAIWRRL-RPGG--------RIVLNA 122 (124)
T ss_pred ---hhhcCCCCEEEECCc---chhHHHHHHHHHHHc-CCCC--------EEEEEe
Confidence 112348999987542 345678999999999 9988 776653
No 183
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.09 E-value=2.6e-09 Score=102.76 Aligned_cols=128 Identities=20% Similarity=0.245 Sum_probs=92.8
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
++.+|||+|||+|.++..++...++.+|+++|+|+.+++.|+++....+ ++++++|+... +... ..++||+|+++-
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~-l~~~-~~~~fDlVv~NP 161 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDA-LPTA-LRGRVDILAANA 161 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhh-cchh-cCCCEeEEEECC
Confidence 3468999999999999999988878899999999999999998865432 57888887532 1111 135799999964
Q ss_pred cc------cCCCh------------------hHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeec
Q 008457 155 VL------SAVSP------------------EKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVR 210 (564)
Q Consensus 155 vl------~~~~~------------------~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (564)
-. ..+++ +-...++..+.++|+|||.+++.....
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---------------------- 219 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---------------------- 219 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc----------------------
Confidence 21 11111 124578888889999999999753211
Q ss_pred CCCceeeccCHHHHHHHHHhCCCcEEE
Q 008457 211 GDGTRAFYFSNDFLTSLFKENGFDVEE 237 (564)
Q Consensus 211 ~~~~~~~~~~~~~l~~~l~~aGf~~~~ 237 (564)
...++..++++.||....
T Consensus 220 ---------~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 220 ---------QAPLAVEAFARAGLIARV 237 (251)
T ss_pred ---------hHHHHHHHHHHCCCCcee
Confidence 245677888899987654
No 184
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.09 E-value=2.4e-10 Score=96.79 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=80.5
Q ss_pred CCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 377 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
|.+|||+|||+|.+...++..+..+++++|+++.+++.++.|+..++.. .++++..-|+.+. ...+..++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~---~~~~~~~~D~~~~-----~~~~~~~~~D 72 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD---DRVEVIVGDARDL-----PEPLPDGKFD 72 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT---TTEEEEESHHHHH-----HHTCTTT-EE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC---ceEEEEECchhhc-----hhhccCceeE
Confidence 4689999999998888888777689999999999999999999998764 4577766655322 1234678999
Q ss_pred EEEEeceeeCC--------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 457 VILGTDVSYIP--------EAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 457 ~Ii~~d~~y~~--------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
+|+++...... .....+++.+.++| +++| ++++..
T Consensus 73 ~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L-~~gG--------~~~~~~ 115 (117)
T PF13659_consen 73 LIVTNPPYGPRSGDKAALRRLYSRFLEAAARLL-KPGG--------VLVFIT 115 (117)
T ss_dssp EEEE--STTSBTT----GGCHHHHHHHHHHHHE-EEEE--------EEEEEE
T ss_pred EEEECCCCccccccchhhHHHHHHHHHHHHHHc-CCCe--------EEEEEe
Confidence 99976554432 24578899999999 9988 666654
No 185
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.09 E-value=3.3e-09 Score=104.71 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=84.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCC-CCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-FLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~-~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||+|||+|.++..++.. +.+|+++|+|+.|++.+++|........ ....+.+...|+.. .+++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~----------l~~~ 212 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES----------LSGK 212 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh----------cCCC
Confidence 6789999999999877777765 4689999999999999999987542210 01234444444321 1368
Q ss_pred ccEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----------------------c--CChh
Q 008457 455 FEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR----------------------Q--VDEP 508 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r----------------------~--~~~~ 508 (564)
||+|++.+++++... ...+++.+.++. ++ .++++...+ . .+..
T Consensus 213 fD~Vv~~~vL~H~p~~~~~~ll~~l~~l~--~g---------~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~e 281 (315)
T PLN02585 213 YDTVTCLDVLIHYPQDKADGMIAHLASLA--EK---------RLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEA 281 (315)
T ss_pred cCEEEEcCEEEecCHHHHHHHHHHHHhhc--CC---------EEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHH
Confidence 999999999876433 334555555433 22 344443221 0 1245
Q ss_pred HHHHHHHHcCCeEEEEc
Q 008457 509 SMLSAATQCGFRLVDKW 525 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~~ 525 (564)
++.+.+++.||++.+..
T Consensus 282 el~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 282 DVERALKKAGWKVARRE 298 (315)
T ss_pred HHHHHHHHCCCEEEEEE
Confidence 67788888999988754
No 186
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.09 E-value=3.6e-09 Score=93.62 Aligned_cols=127 Identities=20% Similarity=0.173 Sum_probs=94.4
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
.+.++.+++|+|||||.++...+..+ ..+|+++|.++++++.+++|++..+. +++.+..- +..+.+.+++
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~----~n~~vv~g-----~Ap~~L~~~~ 101 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV----DNLEVVEG-----DAPEALPDLP 101 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC----CcEEEEec-----cchHhhcCCC
Confidence 45588899999999999998888544 45999999999999999999999884 45555433 2333333222
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCC-eEEEE
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF-RLVDK 524 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~-~~~~~ 524 (564)
+||.|+.. ....++.+++++...| +++| ++++- -.+-++....++.+++.|+ ++.++
T Consensus 102 --~~daiFIG----Gg~~i~~ile~~~~~l-~~gg--------rlV~n-aitlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 102 --SPDAIFIG----GGGNIEEILEAAWERL-KPGG--------RLVAN-AITLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred --CCCEEEEC----CCCCHHHHHHHHHHHc-CcCC--------eEEEE-eecHHHHHHHHHHHHHcCCceEEEE
Confidence 79988743 3478999999999999 9987 55543 3444445567899999999 55554
No 187
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.09 E-value=1.3e-09 Score=102.05 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=79.8
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
+|.+|||+|||||-++..++.. +..+|+++|+|+.|++.+++.+..-+.. + +++..-|- +.+ ++++.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~---~-i~fv~~dA------e~L-Pf~D~s 119 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ---N-VEFVVGDA------ENL-PFPDNS 119 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc---c-eEEEEech------hhC-CCCCCc
Confidence 7899999999999777776664 3569999999999999999987764432 1 44332222 222 578999
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
||+|.++=.+-+..+.+..++++.|+| +|+|
T Consensus 120 FD~vt~~fglrnv~d~~~aL~E~~RVl-KpgG 150 (238)
T COG2226 120 FDAVTISFGLRNVTDIDKALKEMYRVL-KPGG 150 (238)
T ss_pred cCEEEeeehhhcCCCHHHHHHHHHHhh-cCCe
Confidence 999999999999999999999999999 9988
No 188
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.08 E-value=1.2e-09 Score=106.42 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=77.7
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
++.++......++.+|||||||+|.++..++... ..+|+++|+++.+++.++++.. ++.+...|-..
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~---------~~~~~~~d~~~--- 87 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP---------DCQFVEADIAS--- 87 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC---------CCeEEECchhc---
Confidence 4444444445578899999999998887777654 5699999999999999988742 12332222111
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+ ....+||+|+++.++.+..+...+++.+.++| +|+|
T Consensus 88 ---~--~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L-kpgG 124 (258)
T PRK01683 88 ---W--QPPQALDLIFANASLQWLPDHLELFPRLVSLL-APGG 124 (258)
T ss_pred ---c--CCCCCccEEEEccChhhCCCHHHHHHHHHHhc-CCCc
Confidence 1 12358999999999988888999999999999 9988
No 189
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.08 E-value=2e-09 Score=104.34 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=101.1
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEE
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~ 435 (564)
.++.+..+.+.+..... ..+.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..++. .++.+..
T Consensus 69 p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~~~~~ 143 (251)
T TIGR03534 69 PRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL----DNVTFLQ 143 (251)
T ss_pred CCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CeEEEEE
Confidence 34556666666655432 245699999999998887777654 45999999999999999999998776 3466666
Q ss_pred eecCCCccchhhhhhcCCCccEEEEeceeeCCC--------------------------ChHHHHHHHHHHhhccCCCCC
Q 008457 436 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--------------------------AILPLFATAKELTASSNKSLR 489 (564)
Q Consensus 436 l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~l~~~~~~ll~~~~g~~~ 489 (564)
.|+.+. +..++||+|+++.+..... .+..+++.+.++| +++|
T Consensus 144 ~d~~~~--------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L-~~gG--- 211 (251)
T TIGR03534 144 SDWFEP--------LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLL-KPGG--- 211 (251)
T ss_pred Cchhcc--------CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhc-ccCC---
Confidence 655431 2346899998754322111 1246788999999 9988
Q ss_pred CCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 490 EDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 490 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+++.....+ ...+.+.+.++||+...+.
T Consensus 212 -----~~~~~~~~~~--~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 212 -----WLLLEIGYDQ--GEAVRALFEAAGFADVETR 240 (251)
T ss_pred -----EEEEEECccH--HHHHHHHHHhCCCCceEEE
Confidence 7776543332 2356777888999877765
No 190
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.08 E-value=4.5e-09 Score=103.02 Aligned_cols=123 Identities=16% Similarity=0.161 Sum_probs=88.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++|+..|+.. .++.+..-|+.+. ++..+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~---~~i~~~~~D~~~~--------~~~~~ 189 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE---DRVTLIQSDLFAA--------LPGRK 189 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECchhhc--------cCCCC
Confidence 45689999999998888887754 469999999999999999999998864 4577776665321 23457
Q ss_pred ccEEEEeceeeCC--------------------------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh
Q 008457 455 FEVILGTDVSYIP--------------------------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP 508 (564)
Q Consensus 455 fD~Ii~~d~~y~~--------------------------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~ 508 (564)
||+|+++.. |.. ..+..+++.+.++| +++| .+++-..... .
T Consensus 190 fD~Iv~NPP-y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L-~~gG--------~l~~e~g~~~---~ 256 (284)
T TIGR03533 190 YDLIVSNPP-YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHL-NENG--------VLVVEVGNSM---E 256 (284)
T ss_pred ccEEEECCC-CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhc-CCCC--------EEEEEECcCH---H
Confidence 999997633 211 12356788889999 9988 7766544322 3
Q ss_pred HHHHHHHHcCCeEE
Q 008457 509 SMLSAATQCGFRLV 522 (564)
Q Consensus 509 ~~~~~~~~~g~~~~ 522 (564)
.+.+.+...||.-.
T Consensus 257 ~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 257 ALEEAYPDVPFTWL 270 (284)
T ss_pred HHHHHHHhCCCcee
Confidence 56666667776543
No 191
>PRK04457 spermidine synthase; Provisional
Probab=99.07 E-value=8.7e-10 Score=106.63 Aligned_cols=110 Identities=14% Similarity=0.193 Sum_probs=84.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||||||+|.++..+++..|+.+++++|+++++++.|++.+... ..+++++.+|....-. . ..++||+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~--~-~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA--V-HRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH--h-CCCCCCEEE
Confidence 4678999999999999999999989999999999999999999986533 3678999999753211 1 235899999
Q ss_pred Ecccc-cCCCh-hHHHHHHHHHHhccCCCeEEEEEec
Q 008457 152 MVFVL-SAVSP-EKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 152 ~~~vl-~~~~~-~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+...- ...+. -....+++++.+.|+|||++++..+
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 85311 11221 1236899999999999999998644
No 192
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.07 E-value=2.9e-09 Score=108.66 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=81.1
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
...+++.+...+.++.+|||||||+|.++..++...+.+|+++|+|+++++.+++++. +. .+.+...|+.+
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-----~v~~~~~D~~~-- 224 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-----PVEIRLQDYRD-- 224 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-----eEEEEECchhh--
Confidence 3445555555566889999999999988887777666799999999999999999873 21 24444444421
Q ss_pred cchhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
+ +++||+|++..++.+. ..++.+++.+.++| +|+|
T Consensus 225 -------l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~L-kpGG 261 (383)
T PRK11705 225 -------L-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCL-KPDG 261 (383)
T ss_pred -------c-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHc-CCCc
Confidence 1 3589999999888775 45689999999999 9988
No 193
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.07 E-value=3.7e-09 Score=104.00 Aligned_cols=125 Identities=17% Similarity=0.135 Sum_probs=87.3
Q ss_pred CeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 378 KKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
.+|||+|||+|.++..++.... .+|+++|+|+.+++.+++|+..++.. +++.+...||.+. +...+||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~---~~v~~~~~d~~~~--------~~~~~fD 184 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE---HRVEFIQSNLFEP--------LAGQKID 184 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECchhcc--------CcCCCcc
Confidence 6899999999988887776553 69999999999999999999988763 4577777776532 2234799
Q ss_pred EEEEeceee--------------CC-----------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHH
Q 008457 457 VILGTDVSY--------------IP-----------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML 511 (564)
Q Consensus 457 ~Ii~~d~~y--------------~~-----------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~ 511 (564)
+|+++.... .+ ..+..+++.+.++| +++| .+++.....+.. .+.
T Consensus 185 lIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L-~~gG--------~l~~e~g~~q~~--~~~ 253 (284)
T TIGR00536 185 IIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL-KPNG--------FLVCEIGNWQQK--SLK 253 (284)
T ss_pred EEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc-cCCC--------EEEEEECccHHH--HHH
Confidence 999753211 11 13556788888999 9987 766655443322 344
Q ss_pred HHHH-HcCCeEEEE
Q 008457 512 SAAT-QCGFRLVDK 524 (564)
Q Consensus 512 ~~~~-~~g~~~~~~ 524 (564)
+.+. +.||.-.++
T Consensus 254 ~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 254 ELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHhcCCCceeEE
Confidence 4454 357765444
No 194
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.06 E-value=3.3e-09 Score=112.13 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=90.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||+|||+|.++..++.. ...+|+++|+|+.+++.+++|+..+++. +++.+...||.+. +..++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~---~~v~~~~~D~~~~--------~~~~~ 206 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT---DRIQIIHSNWFEN--------IEKQK 206 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc---cceeeeecchhhh--------CcCCC
Confidence 3468999999999888777655 4569999999999999999999988764 4566666665321 23458
Q ss_pred ccEEEEeceeeCC--------------------------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh
Q 008457 455 FEVILGTDVSYIP--------------------------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP 508 (564)
Q Consensus 455 fD~Ii~~d~~y~~--------------------------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~ 508 (564)
||+|+++...... ..+..+++.+.++| +|+| .+++.....+ ..
T Consensus 207 fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L-~~gG--------~l~lEig~~q--~~ 275 (506)
T PRK01544 207 FDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFL-KPNG--------KIILEIGFKQ--EE 275 (506)
T ss_pred ccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhc-cCCC--------EEEEEECCch--HH
Confidence 9999975422110 12345677888899 9988 7776543332 33
Q ss_pred HHHHHHHHcCCeEEEEc
Q 008457 509 SMLSAATQCGFRLVDKW 525 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~~ 525 (564)
.+.+.+.+.||...++.
T Consensus 276 ~v~~~~~~~g~~~~~~~ 292 (506)
T PRK01544 276 AVTQIFLDHGYNIESVY 292 (506)
T ss_pred HHHHHHHhcCCCceEEE
Confidence 56677778899876654
No 195
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.06 E-value=5.2e-10 Score=103.62 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=83.4
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCccccc
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLS 139 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~ 139 (564)
.+...+.+.+...++.+|||||||+|+.+..|+.. .+...|+++|..+.+.+.|+++....+ .++.++++|.... .+
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g-~~ 137 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG-WP 137 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT-TG
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc-cc
Confidence 44455667777899999999999999999999887 445689999999999999999876544 4899999997532 21
Q ss_pred CCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 140 RQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 140 ~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
....||.|++......+| ..+.+.|++||++++-.
T Consensus 138 ---~~apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 138 ---EEAPFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp ---GG-SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEE
T ss_pred ---cCCCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEE
Confidence 346899999998887664 22667789999999853
No 196
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.4e-09 Score=103.67 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=88.2
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCe-eEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRV-STFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i-~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+.++...+.+|||+|||.|.++..+++.+|..+++.+|.+..+++.|+.+...+.... .+...|+.. +..+ +
T Consensus 151 l~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-----~v~~-k 224 (300)
T COG2813 151 LETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-----PVEG-K 224 (300)
T ss_pred HHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-----cccc-c
Confidence 45555566679999999999999999999999999999999999999999877554333 455565532 3344 9
Q ss_pred eeEEEEcccccCCC---hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 147 IDIVTMVFVLSAVS---PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 147 fD~V~~~~vl~~~~---~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
||+|+||=-+|--- ..--.+++.+..+.|++||.|.+.-
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 99999988877331 2233489999999999999998863
No 197
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.06 E-value=1.3e-09 Score=105.15 Aligned_cols=171 Identities=19% Similarity=0.226 Sum_probs=112.6
Q ss_pred EEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEc
Q 008457 327 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 406 (564)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD 406 (564)
...+...|..+.|....+ ..||+. ..-+..=.|+..+ .++++||+|-|-||+++..++..++.+|+.+|
T Consensus 85 ~~~v~E~gl~f~v~l~~g------qktGlF--lDqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD 153 (286)
T PF10672_consen 85 FFTVEENGLKFRVDLTDG------QKTGLF--LDQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVD 153 (286)
T ss_dssp EEEEEETTEEEEEESSSS------SSTSS---GGGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEE
T ss_pred ceEEEECCEEEEEEcCCC------CcceEc--HHHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEe
Confidence 345667887777764333 467742 2222222333332 37899999999999999998888888999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh-cCCCccEEEEeceeeCC------CChHHHHHHHHH
Q 008457 407 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE-NNEGFEVILGTDVSYIP------EAILPLFATAKE 479 (564)
Q Consensus 407 ~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~-~~~~fD~Ii~~d~~y~~------~~~~~l~~~~~~ 479 (564)
.|..+++.+++|+.+|++.. .++++...|. ++.+..+ ..++||+||.-.+-|-. .++..|+..+.+
T Consensus 154 ~S~~al~~a~~N~~lNg~~~--~~~~~~~~Dv-----f~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ 226 (286)
T PF10672_consen 154 SSKRALEWAKENAALNGLDL--DRHRFIQGDV-----FKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMK 226 (286)
T ss_dssp S-HHHHHHHHHHHHHTT-CC--TCEEEEES-H-----HHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCc--cceEEEecCH-----HHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999853 4555554433 2222221 24699999965554432 267788999999
Q ss_pred HhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEE
Q 008457 480 LTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 480 ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
+| +|+| .+++|......+.+.|++.+.+.+-++..+
T Consensus 227 ll-~~gG--------~l~~~scs~~i~~~~l~~~~~~~a~~~~~~ 262 (286)
T PF10672_consen 227 LL-KPGG--------LLLTCSCSHHISPDFLLEAVAEAAREVEFI 262 (286)
T ss_dssp TE-EEEE--------EEEEEE--TTS-HHHHHHHHHHHHHHCEEE
T ss_pred hc-CCCC--------EEEEEcCCcccCHHHHHHHHHHhCccceEe
Confidence 99 9988 888888888888877888776655444444
No 198
>PRK04266 fibrillarin; Provisional
Probab=99.05 E-value=7.7e-09 Score=97.39 Aligned_cols=135 Identities=20% Similarity=0.198 Sum_probs=87.2
Q ss_pred CCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 372 PTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 372 ~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
..+.++.+|||+|||+|.++..++... ..+|+++|.++++++.+.+++... .++.+..-|-... .....+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~------~nv~~i~~D~~~~---~~~~~l 138 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER------KNIIPILADARKP---ERYAHV 138 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc------CCcEEEECCCCCc---chhhhc
Confidence 455688899999999998887777654 358999999999999887776532 1233332222111 000112
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC-----h---hHHHHHHHHcCCeEE
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-----E---PSMLSAATQCGFRLV 522 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~-----~---~~~~~~~~~~g~~~~ 522 (564)
..+||+|+. |+- ++.....+++.+.++| +|+| .++++.+.|..+ . ....+.++++||++.
T Consensus 139 -~~~~D~i~~-d~~-~p~~~~~~L~~~~r~L-KpGG--------~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i 206 (226)
T PRK04266 139 -VEKVDVIYQ-DVA-QPNQAEIAIDNAEFFL-KDGG--------YLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEIL 206 (226)
T ss_pred -cccCCEEEE-CCC-ChhHHHHHHHHHHHhc-CCCc--------EEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 246898873 321 1222345689999999 9988 777754433221 1 134588888999999
Q ss_pred EEcCC
Q 008457 523 DKWPS 527 (564)
Q Consensus 523 ~~~~~ 527 (564)
+....
T Consensus 207 ~~~~l 211 (226)
T PRK04266 207 EVVDL 211 (226)
T ss_pred EEEcC
Confidence 98754
No 199
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.05 E-value=6.8e-09 Score=98.69 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=76.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
++.+|||+|||+|.++..++.... .+++++|+++.+++.++++.. . ..++.+...+..+. +...+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~---~~~i~~~~~d~~~~-------~~~~~ 105 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L---PLNIEFIQADAEAL-------PFEDN 105 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c---CCCceEEecchhcC-------CCCCC
Confidence 788999999999988777776665 489999999999999998875 1 13455554444322 12346
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+||+|+++..+.+......+++.+.++| +|+|
T Consensus 106 ~~D~i~~~~~~~~~~~~~~~l~~~~~~L-~~gG 137 (223)
T TIGR01934 106 SFDAVTIAFGLRNVTDIQKALREMYRVL-KPGG 137 (223)
T ss_pred cEEEEEEeeeeCCcccHHHHHHHHHHHc-CCCc
Confidence 8999999988888889999999999999 9988
No 200
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.05 E-value=1.9e-09 Score=106.27 Aligned_cols=96 Identities=24% Similarity=0.234 Sum_probs=75.4
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++++|||+|||+|..+..++..+ .+|+++|.|+.+++.+++|+..+++ .+.+...|.... . .+++|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l-----~v~~~~~D~~~~-------~-~~~~f 185 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENL-----NIRTGLYDINSA-------S-IQEEY 185 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEechhcc-------c-ccCCc
Confidence 55699999999997777776654 6899999999999999999988765 244444443321 1 14689
Q ss_pred cEEEEeceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 456 EVILGTDVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
|+|++..++++. +..+.+++.+.++| +|+|
T Consensus 186 D~I~~~~vl~~l~~~~~~~~l~~~~~~L-kpgG 217 (287)
T PRK12335 186 DFILSTVVLMFLNRERIPAIIKNMQEHT-NPGG 217 (287)
T ss_pred cEEEEcchhhhCCHHHHHHHHHHHHHhc-CCCc
Confidence 999999887753 47889999999999 9988
No 201
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.05 E-value=7e-09 Score=108.23 Aligned_cols=118 Identities=13% Similarity=0.127 Sum_probs=88.2
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++....+ .++.+++.|+....-..+...++|
T Consensus 247 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 247 LLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred HhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccC
Confidence 4555788999999999999999998874 35699999999999999998876544 468888898864321111235789
Q ss_pred eEEEEc------ccccCCCh-------hH-------HHHHHHHHHhccCCCeEEEEEecC
Q 008457 148 DIVTMV------FVLSAVSP-------EK-------MSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 148 D~V~~~------~vl~~~~~-------~~-------~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
|.|++. .++.+-+. .+ ...+|.++.++|||||+++.++-.
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 999973 23443321 11 468899999999999999887544
No 202
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=5.1e-09 Score=101.96 Aligned_cols=122 Identities=24% Similarity=0.386 Sum_probs=91.7
Q ss_pred eEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEccc-
Q 008457 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMVFV- 155 (564)
Q Consensus 78 ~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~v- 155 (564)
+|||+|||+|..+..++...|..+|+|+|+|+.+++.|+++....+ .++.++..|+.. ++. ++||+|++|=-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-----~~~-~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-----PLR-GKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-----ccC-CceeEEEeCCCC
Confidence 8999999999999999999888899999999999999999876555 555566666543 223 48999999531
Q ss_pred -c---cCCC------------------hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCC
Q 008457 156 -L---SAVS------------------PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDG 213 (564)
Q Consensus 156 -l---~~~~------------------~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (564)
- .+.. .+-...++.++.+.|+|||.+++..-.
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-------------------------- 240 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-------------------------- 240 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC--------------------------
Confidence 1 1110 124567888899999999998875211
Q ss_pred ceeeccCHHHHHHHHHhCC-CcEE
Q 008457 214 TRAFYFSNDFLTSLFKENG-FDVE 236 (564)
Q Consensus 214 ~~~~~~~~~~l~~~l~~aG-f~~~ 236 (564)
-..+.+.++|.+.| |..+
T Consensus 241 -----~q~~~v~~~~~~~~~~~~v 259 (280)
T COG2890 241 -----TQGEAVKALFEDTGFFEIV 259 (280)
T ss_pred -----CcHHHHHHHHHhcCCceEE
Confidence 14678889999999 4433
No 203
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.04 E-value=4.7e-09 Score=96.00 Aligned_cols=114 Identities=16% Similarity=0.328 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.....|.|+|||.+.++. .. ..+|+.+|+-+ .+-+++.+|+... |+++++.|+++++
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a--------------~~~~V~~cDm~~v----Pl~d~svDvaV~C 235 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVA--------------VNERVIACDMRNV----PLEDESVDVAVFC 235 (325)
T ss_pred cCceEEEecccchhhhhh---cc--ccceeeeeeec--------------CCCceeeccccCC----cCccCcccEEEee
Confidence 677889999999998865 22 35699999843 2346778998753 6789999999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.+|+-. ++..++++++|+|+|||.++|.+.... |-+...+...+...||
T Consensus 236 LSLMgt---n~~df~kEa~RiLk~gG~l~IAEv~SR----------------------------f~dv~~f~r~l~~lGF 284 (325)
T KOG3045|consen 236 LSLMGT---NLADFIKEANRILKPGGLLYIAEVKSR----------------------------FSDVKGFVRALTKLGF 284 (325)
T ss_pred Hhhhcc---cHHHHHHHHHHHhccCceEEEEehhhh----------------------------cccHHHHHHHHHHcCC
Confidence 888765 788899999999999999999865421 1256678899999999
Q ss_pred cEEEeeee
Q 008457 234 DVEELGLC 241 (564)
Q Consensus 234 ~~~~~~~~ 241 (564)
.+......
T Consensus 285 ~~~~~d~~ 292 (325)
T KOG3045|consen 285 DVKHKDVS 292 (325)
T ss_pred eeeehhhh
Confidence 98766554
No 204
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.04 E-value=3.4e-09 Score=97.21 Aligned_cols=104 Identities=15% Similarity=0.186 Sum_probs=76.6
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc-C
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-N 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~-~ 452 (564)
...+.+||||+||+|.++..++.+++++|+++|.++.+++.+++|++.|+.. .++.+...|. ...+..+. .
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~---~~~~~~~~D~-----~~~l~~~~~~ 118 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG---EQAEVVRNSA-----LRALKFLAKK 118 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc---ccEEEEehhH-----HHHHHHhhcc
Confidence 3578999999999999999999999889999999999999999999999864 3445443332 12222221 2
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHH--HhhccCC
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKE--LTASSNK 486 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~--ll~~~~g 486 (564)
.++|.||..|..|.....+.++..+.. +| +++|
T Consensus 119 ~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l-~~~~ 153 (189)
T TIGR00095 119 PTFDNVIYLDPPFFNGALQALLELCENNWIL-EDTV 153 (189)
T ss_pred CCCceEEEECcCCCCCcHHHHHHHHHHCCCC-CCCe
Confidence 344455668999998888888776655 45 5544
No 205
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.03 E-value=9.2e-09 Score=101.19 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=99.1
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 358 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 358 W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
.+.+..+.+++.......++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+. +.. ..++.+...
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~---~~~i~~~~~ 165 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL---GARVEFLQG 165 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC---CCcEEEEEc
Confidence 45556677777654444567899999999998877777654 4699999999999999999998 222 145777777
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCC--------------------------CChHHHHHHHHHHhhccCCCCCC
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIP--------------------------EAILPLFATAKELTASSNKSLRE 490 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--------------------------~~~~~l~~~~~~ll~~~~g~~~~ 490 (564)
||... ...++||+|+++...... ..+..+++.+.++| +++|
T Consensus 166 d~~~~--------~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~L-k~gG---- 232 (275)
T PRK09328 166 DWFEP--------LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYL-KPGG---- 232 (275)
T ss_pred cccCc--------CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhc-ccCC----
Confidence 76432 124689999975332111 12456778888999 9988
Q ss_pred CCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEE
Q 008457 491 DQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 491 ~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
.+++...... ...+.+.+.+.||.-.++
T Consensus 233 ----~l~~e~g~~~--~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 233 ----WLLLEIGYDQ--GEAVRALLAAAGFADVET 260 (275)
T ss_pred ----EEEEEECchH--HHHHHHHHHhCCCceeEE
Confidence 7766443322 235667777889975544
No 206
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.03 E-value=5.1e-11 Score=97.60 Aligned_cols=96 Identities=17% Similarity=0.251 Sum_probs=60.0
Q ss_pred EEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEE
Q 008457 381 LELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVIL 459 (564)
Q Consensus 381 LelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii 459 (564)
||+|||+|.+...++.. ...+++++|+|+.+++.+++++...... ....+.+...+... ....++||+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~fD~V~ 71 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND------NFERLRFDVLDLFD---YDPPESFDLVV 71 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS------CCC----SEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc------ceeEEEeecCChhh---cccccccceeh
Confidence 79999999887777765 3569999999999998888777765432 22223333222211 11225999999
Q ss_pred EeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 460 GTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 460 ~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
++.++++.++...+++.+.++| +|+|
T Consensus 72 ~~~vl~~l~~~~~~l~~~~~~L-~pgG 97 (99)
T PF08242_consen 72 ASNVLHHLEDIEAVLRNIYRLL-KPGG 97 (99)
T ss_dssp EE-TTS--S-HHHHHHHHTTT--TSS-
T ss_pred hhhhHhhhhhHHHHHHHHHHHc-CCCC
Confidence 9999999999999999999999 9988
No 207
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.02 E-value=9.1e-10 Score=99.78 Aligned_cols=154 Identities=14% Similarity=0.252 Sum_probs=98.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCC-----------------------------
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET----------------------------- 124 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~----------------------------- 124 (564)
..+..+|||||.+|.++..+++.+....+.|+|+++..++.|++..+....
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 568899999999999999999998677899999999999999986542110
Q ss_pred -------CeeEEEecCCc--ccccCCCCCCceeEEEEcccccCC----ChhHHHHHHHHHHhccCCCeEEEEEecCCCch
Q 008457 125 -------RVSTFVCDLIS--DDLSRQISPSSIDIVTMVFVLSAV----SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL 191 (564)
Q Consensus 125 -------~i~~~~~d~~~--~~~~~~~~~~~fD~V~~~~vl~~~----~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~ 191 (564)
++.|...+... .++ ..+....||+|+|..+-.|+ .++.+..++++++++|.|||+|++. +.+-..
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~df-l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE-PQpWks 214 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDF-LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE-PQPWKS 214 (288)
T ss_pred ccccCCcchhcccccEEEecchh-hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc-CCchHH
Confidence 11111111000 000 01245689999997665443 3688999999999999999999885 222111
Q ss_pred hhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC--CCcEEE
Q 008457 192 AQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN--GFDVEE 237 (564)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a--Gf~~~~ 237 (564)
..... .....+..+ -...++.++....++.+. ||+..+
T Consensus 215 Y~kaa-r~~e~~~~n-------y~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 215 YKKAA-RRSEKLAAN-------YFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred HHHHH-HHHHHhhcC-------ccceecCHHHHHhhhhhhhhheeeec
Confidence 11110 111111111 122356788888888776 665543
No 208
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.02 E-value=3.2e-09 Score=106.79 Aligned_cols=137 Identities=18% Similarity=0.140 Sum_probs=95.7
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
.|+..+.......++.+|||+|||+|.+...++. .+.+|+++|+++.+++.++.|+..++.. .+.+..-|..+.
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~----~i~~~~~D~~~l- 242 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIE----DFFVKRGDATKL- 242 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCC----CCeEEecchhcC-
Confidence 4555555444455788999999999987766554 4568999999999999999999987764 244443333221
Q ss_pred cchhhhhhcCCCccEEEEeceeeCC----------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHH
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIP----------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLS 512 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~----------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~ 512 (564)
++..++||+|++ |..|.. .....+++.+.++| +|+| .+++..+.+. .+.+
T Consensus 243 ------~~~~~~~D~Iv~-dPPyg~~~~~~~~~~~~l~~~~l~~~~r~L-k~gG--------~lv~~~~~~~----~~~~ 302 (329)
T TIGR01177 243 ------PLSSESVDAIAT-DPPYGRSTTAAGDGLESLYERSLEEFHEVL-KSEG--------WIVYAVPTRI----DLES 302 (329)
T ss_pred ------CcccCCCCEEEE-CCCCcCcccccCCchHHHHHHHHHHHHHHc-cCCc--------EEEEEEcCCC----CHHH
Confidence 223568999885 455532 12578999999999 9988 6666655432 3345
Q ss_pred HHHHcCCeEEEEcC
Q 008457 513 AATQCGFRLVDKWP 526 (564)
Q Consensus 513 ~~~~~g~~~~~~~~ 526 (564)
.++++|| +...+.
T Consensus 303 ~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 303 LAEDAFR-VVKRFE 315 (329)
T ss_pred HHhhcCc-chheee
Confidence 6678899 877764
No 209
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.02 E-value=1.9e-09 Score=104.68 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=72.7
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++.+|||||||+|.++..++... ..+|+++|+|+.+++.++++ + +.+...|. ..+ ..
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~-------~~~~~~d~------~~~--~~ 86 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G-------VDARTGDV------RDW--KP 86 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C-------CcEEEcCh------hhC--CC
Confidence 34577899999999998887777664 46899999999999988763 1 22322221 111 12
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.++||+|+++.++.+..+...+++.+.++| +|+|
T Consensus 87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L-kpgG 120 (255)
T PRK14103 87 KPDTDVVVSNAALQWVPEHADLLVRWVDEL-APGS 120 (255)
T ss_pred CCCceEEEEehhhhhCCCHHHHHHHHHHhC-CCCc
Confidence 468999999999999889999999999999 9988
No 210
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.02 E-value=6.5e-09 Score=108.28 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=86.7
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeE--EEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVST--FVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~--~~~d~~~~~~~~~~~~~~ 146 (564)
..+.+.++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++....+..+.+ ..+|...... ..+.++
T Consensus 232 ~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~--~~~~~~ 309 (426)
T TIGR00563 232 TWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ--WAENEQ 309 (426)
T ss_pred HHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc--cccccc
Confidence 345667889999999999999999998876679999999999999999887655443444 4445432111 114578
Q ss_pred eeEEEEc------ccccCCCh-------h-------HHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 147 IDIVTMV------FVLSAVSP-------E-------KMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 147 fD~V~~~------~vl~~~~~-------~-------~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
||.|++. .++++.|. + ....+|.++.++|||||.+++++-..
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9999962 24444331 1 24679999999999999999987654
No 211
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.02 E-value=1.6e-09 Score=105.00 Aligned_cols=129 Identities=15% Similarity=0.212 Sum_probs=90.9
Q ss_pred hccccccccchhHHHHhhhc-cCCCCCeEEEEcCCccccHHHHH----HhCC----CcEEEEEeCChHHHHHHHhccc--
Q 008457 52 HQDRFFKDRHYLDKEWGRYF-SGAGRKDVLEVGCGAGNTIFPLI----AAYP----DVFVYACDFSPRAVNLVMTHKD-- 120 (564)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~l-~~~~~~~VLDiGcG~G~~~~~l~----~~~~----~~~v~~iD~s~~~l~~a~~~~~-- 120 (564)
+...||++...+.. +.+.+ ...+..+|+..||++|.-...++ +..+ ..+|+|+|+|+.+++.|++-.-
T Consensus 92 neT~FFRd~~~f~~-L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~ 170 (287)
T PRK10611 92 NLTAFFREAHHFPI-LAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQ 170 (287)
T ss_pred CCCCccCCcHHHHH-HHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCH
Confidence 34456666554322 22222 22345899999999996554443 3221 4689999999999999987310
Q ss_pred ----------------c--------------cCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHH
Q 008457 121 ----------------F--------------TETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQN 170 (564)
Q Consensus 121 ----------------~--------------~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~ 170 (564)
. ....|.|...|+..... + +.+.||+|+|.+++.|++++....++.+
T Consensus 171 ~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~--~-~~~~fD~I~cRNvliyF~~~~~~~vl~~ 247 (287)
T PRK10611 171 EELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQW--A-VPGPFDAIFCRNVMIYFDKTTQERILRR 247 (287)
T ss_pred HHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCC--c-cCCCcceeeHhhHHhcCCHHHHHHHHHH
Confidence 0 01346777787764322 1 2578999999999999998899999999
Q ss_pred HHhccCCCeEEEEE
Q 008457 171 IKKVLKPTGYVLFR 184 (564)
Q Consensus 171 ~~r~LkpgG~lii~ 184 (564)
+.+.|+|||+|++.
T Consensus 248 l~~~L~pgG~L~lG 261 (287)
T PRK10611 248 FVPLLKPDGLLFAG 261 (287)
T ss_pred HHHHhCCCcEEEEe
Confidence 99999999998874
No 212
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.02 E-value=5.2e-09 Score=100.54 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=80.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
++.+|||||||+|.+...++.. ...+|+++|+++.|++.+++++...+.. .++.+...|+.+. +.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~---~~v~~~~~d~~~~---------~~ 120 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE---IPVEILCNDIRHV---------EI 120 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEECChhhC---------CC
Confidence 6779999999999777666654 3568999999999999999998764432 3466665555432 22
Q ss_pred CCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 453 EGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
..+|+|+++.++.+. .....+++.+.+.| +|+| .++++...+
T Consensus 121 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~L-kpgG--------~l~i~d~~~ 164 (239)
T TIGR00740 121 KNASMVILNFTLQFLPPEDRIALLTKIYEGL-NPNG--------VLVLSEKFR 164 (239)
T ss_pred CCCCEEeeecchhhCCHHHHHHHHHHHHHhc-CCCe--------EEEEeeccc
Confidence 468999887776553 34678999999999 9988 888876544
No 213
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=4e-09 Score=97.55 Aligned_cols=108 Identities=20% Similarity=0.194 Sum_probs=89.6
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCC
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
..+...++.+|||.|.|+|.++..|++. +|..+|+..|+.++.++.|+++....+ +++.+..+|+..... ..
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-----~~ 162 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-----EE 162 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-----cc
Confidence 3445589999999999999999999975 677899999999999999999876533 458888899875432 34
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
.||+|+. -+| ++.+++..++++|+|||.+++..+..
T Consensus 163 ~vDav~L-----Dmp--~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 163 DVDAVFL-----DLP--DPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred ccCEEEE-----cCC--ChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 8999998 454 78899999999999999999876553
No 214
>PRK00811 spermidine synthase; Provisional
Probab=99.01 E-value=1.7e-09 Score=106.05 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc------cCCCeeEEEecCCcccccCCCCCCce
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF------TETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~------~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.++.+||+||||+|..+..+++..+..+|+++|+++.+++.|++.+.. ...+++++.+|....- .-..++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l---~~~~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV---AETENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH---hhCCCcc
Confidence 567899999999999999998764456899999999999999987642 2467899999975421 1145789
Q ss_pred eEEEEcccccCCChhH--HHHHHHHHHhccCCCeEEEEE
Q 008457 148 DIVTMVFVLSAVSPEK--MSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~--~~~~l~~~~r~LkpgG~lii~ 184 (564)
|+|++...-.+.+... ...+++.+++.|+|||++++.
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999965433322121 367899999999999999874
No 215
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.01 E-value=9.7e-09 Score=95.41 Aligned_cols=129 Identities=9% Similarity=0.021 Sum_probs=84.6
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++.+|||+|||+|.++..++.. ...+|+++|.++++++.+++|+..++. .++.+...|..+ .+..+
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~----~~v~~~~~d~~~-----~~~~~- 106 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV----KNVEVIEGSAPE-----CLAQL- 106 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCeEEEECchHH-----HHhhC-
Confidence 4457789999999999887777654 346999999999999999999998775 245554433211 11111
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHH---HHcCCeEEEEc
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA---TQCGFRLVDKW 525 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~---~~~g~~~~~~~ 525 (564)
...+|.|+. ........+++.+.++| +|+| .+++...... ......+.+ ...++++.++.
T Consensus 107 ~~~~d~v~~----~~~~~~~~~l~~~~~~L-kpgG--------~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
T PRK07402 107 APAPDRVCI----EGGRPIKEILQAVWQYL-KPGG--------RLVATASSLE-GLYAISEGLAQLQARNIEVVQAA 169 (196)
T ss_pred CCCCCEEEE----ECCcCHHHHHHHHHHhc-CCCe--------EEEEEeecHH-HHHHHHHHHHhcCCCCceEEEEE
Confidence 224566543 22346789999999999 9988 6666654322 111233333 34577777663
No 216
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.00 E-value=3.2e-09 Score=102.36 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=79.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
++.+|||||||+|.++..++.. ...+|+++|+|+.|++.+++|+..++.. .++.+..-+..+ ++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~---~~v~~~~~d~~~---------~~~ 123 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP---TPVDVIEGDIRD---------IAI 123 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEeCChhh---------CCC
Confidence 6789999999999776666542 3569999999999999999999876653 356665444332 123
Q ss_pred CCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 453 EGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
..+|+|+++-++.+. .....+++.+.+.| +|+| .++++...+
T Consensus 124 ~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~L-kpGG--------~l~l~e~~~ 167 (247)
T PRK15451 124 ENASMVVLNFTLQFLEPSERQALLDKIYQGL-NPGG--------ALVLSEKFS 167 (247)
T ss_pred CCCCEEehhhHHHhCCHHHHHHHHHHHHHhc-CCCC--------EEEEEEecC
Confidence 468999987666543 34578999999999 9988 888876543
No 217
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.00 E-value=1.6e-09 Score=99.15 Aligned_cols=107 Identities=22% Similarity=0.347 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCCccccHHHH----HHh----CC-CcEEEEEeCChHHHHHHHhc------------------c-ccc---
Q 008457 74 AGRKDVLEVGCGAGNTIFPL----IAA----YP-DVFVYACDFSPRAVNLVMTH------------------K-DFT--- 122 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l----~~~----~~-~~~v~~iD~s~~~l~~a~~~------------------~-~~~--- 122 (564)
.+..+|+..||++|.-...| .+. .+ ..+++|+|+|+.+++.|++- + ...
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 36789999999999655443 331 11 47999999999999999861 0 000
Q ss_pred -------CCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 123 -------ETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 123 -------~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
...|.|...|+.+. +.+.+.||+|+|.+||.++.++....+++.+++.|+|||+|++.
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~----~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDP----DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S----------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eeEChHHcCceEEEecccCCC----CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 13588888888761 22567999999999999999899999999999999999999984
No 218
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.00 E-value=2e-08 Score=99.37 Aligned_cols=121 Identities=15% Similarity=0.131 Sum_probs=85.0
Q ss_pred CeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 378 KKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++|+..++.. +++.+...|+.+. ++.++||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~---~~i~~~~~D~~~~--------l~~~~fD 203 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE---DRVTLIESDLFAA--------LPGRRYD 203 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---CcEEEEECchhhh--------CCCCCcc
Confidence 689999999998888777664 469999999999999999999998764 4577766665321 2345899
Q ss_pred EEEEeceee--------------CC-----------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHH
Q 008457 457 VILGTDVSY--------------IP-----------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML 511 (564)
Q Consensus 457 ~Ii~~d~~y--------------~~-----------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~ 511 (564)
+|+++.+.. .+ ..+..+++.+.++| +|+| .+++-.... ...+.
T Consensus 204 lIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L-~pgG--------~l~~E~g~~---~~~~~ 271 (307)
T PRK11805 204 LIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYL-TEDG--------VLVVEVGNS---RVHLE 271 (307)
T ss_pred EEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhc-CCCC--------EEEEEECcC---HHHHH
Confidence 999763211 11 12357788999999 9988 666643332 22355
Q ss_pred HHHHHcCCeE
Q 008457 512 SAATQCGFRL 521 (564)
Q Consensus 512 ~~~~~~g~~~ 521 (564)
+.+...|+.-
T Consensus 272 ~~~~~~~~~~ 281 (307)
T PRK11805 272 EAYPDVPFTW 281 (307)
T ss_pred HHHhhCCCEE
Confidence 5555556543
No 219
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.99 E-value=2.4e-09 Score=105.81 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=81.6
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~ 142 (564)
..+.+.+...++.+|||+|||+|.++..+++..+ ..+|+++|+++.+++.|+++....+ .++.++++|..... .
T Consensus 70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~----~ 145 (322)
T PRK13943 70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV----P 145 (322)
T ss_pred HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc----c
Confidence 3444555557889999999999999999998753 3579999999999999998765433 46888888875321 1
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
..++||+|++...+.+++ ..+.+.|+|||.+++..
T Consensus 146 ~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 146 EFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 235799999976655442 24677899999998854
No 220
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.99 E-value=7.3e-09 Score=96.75 Aligned_cols=112 Identities=15% Similarity=0.076 Sum_probs=78.1
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
..++.+.....++.+|||+|||+|.++..++... ..+|+++|.++++++.+++|+..++.. +++.+...|..+.
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~---~~v~~~~~d~~~~- 136 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW---GVVEVYHGDGKRG- 136 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEEECCcccC-
Confidence 4444444445577899999999997776666543 358999999999999999999987753 3455555443321
Q ss_pred cchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
. ....+||+|++..... .+.+.+.+.| +|+| .+++...
T Consensus 137 -~-----~~~~~fD~Ii~~~~~~------~~~~~l~~~L-~~gG--------~lvi~~~ 174 (205)
T PRK13944 137 -L-----EKHAPFDAIIVTAAAS------TIPSALVRQL-KDGG--------VLVIPVE 174 (205)
T ss_pred -C-----ccCCCccEEEEccCcc------hhhHHHHHhc-CcCc--------EEEEEEc
Confidence 1 1235899999775543 2335778899 9988 7766543
No 221
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.99 E-value=2.2e-09 Score=103.87 Aligned_cols=150 Identities=20% Similarity=0.295 Sum_probs=104.8
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEccc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFV 155 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~v 155 (564)
-...+|+|.|.|+.+..+...+|. +-+++++...+..+..... ..|+.+.+|..++ . |. -|+|++.++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~-~----P~--~daI~mkWi 245 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQD-T----PK--GDAIWMKWI 245 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc---CCcceeccccccc-C----CC--cCeEEEEee
Confidence 488999999999999999998877 6667766666666655543 2388888888765 4 33 369999999
Q ss_pred ccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCc-hhhhhh-cccccccccceeec-CCCceeeccCHHHHHHHHHhCC
Q 008457 156 LSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD-LAQERL-TGKDQKISENFYVR-GDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 156 l~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~aG 232 (564)
|||+++++..++|++++..|+|||.+++.+...+. ...... .............. ..|.. .+..+++.++.++|
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gke---rt~~e~q~l~~~~g 322 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKE---RTLKEFQALLPEEG 322 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhcccee---ccHHHHHhcchhhc
Confidence 99999999999999999999999999998875442 111110 10000000000011 11222 37899999999999
Q ss_pred CcEEEeee
Q 008457 233 FDVEELGL 240 (564)
Q Consensus 233 f~~~~~~~ 240 (564)
|.+..+..
T Consensus 323 F~~~~~~~ 330 (342)
T KOG3178|consen 323 FPVCMVAL 330 (342)
T ss_pred CceeEEEe
Confidence 98876544
No 222
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.98 E-value=3.9e-09 Score=99.79 Aligned_cols=133 Identities=20% Similarity=0.244 Sum_probs=98.1
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~ 144 (564)
.-.+...||.+|||.|.|+|.++..|++. +|.++|+..|+.++.++.|++.+...+ .++.+...|+....+...+ +
T Consensus 33 ~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~ 111 (247)
T PF08704_consen 33 LMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL-E 111 (247)
T ss_dssp HHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT--T
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc-c
Confidence 33455689999999999999999999986 788999999999999999999876544 5799999999765552222 4
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhcc-CCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVL-KPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDF 223 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~L-kpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (564)
..+|.|++ -+| ++..++..+.+.| ||||.+.+..+... ....
T Consensus 112 ~~~DavfL-----Dlp--~Pw~~i~~~~~~L~~~gG~i~~fsP~ie------------------------------Qv~~ 154 (247)
T PF08704_consen 112 SDFDAVFL-----DLP--DPWEAIPHAKRALKKPGGRICCFSPCIE------------------------------QVQK 154 (247)
T ss_dssp TSEEEEEE-----ESS--SGGGGHHHHHHHE-EEEEEEEEEESSHH------------------------------HHHH
T ss_pred CcccEEEE-----eCC--CHHHHHHHHHHHHhcCCceEEEECCCHH------------------------------HHHH
Confidence 68999998 443 5677899999999 89999998655431 1345
Q ss_pred HHHHHHhCCCcEEEe
Q 008457 224 LTSLFKENGFDVEEL 238 (564)
Q Consensus 224 l~~~l~~aGf~~~~~ 238 (564)
....|++.||..+++
T Consensus 155 ~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 155 TVEALREHGFTDIET 169 (247)
T ss_dssp HHHHHHHTTEEEEEE
T ss_pred HHHHHHHCCCeeeEE
Confidence 557778899977664
No 223
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.98 E-value=7.5e-09 Score=98.96 Aligned_cols=128 Identities=19% Similarity=0.231 Sum_probs=85.8
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||+|||+|.++..++..+ .+|+++|+++.+++.++++...++.. .++.+...|+.. ..++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~---~~i~~~~~d~~~----------~~~~ 127 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLA---GNITFEVGDLES----------LLGR 127 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCc---cCcEEEEcCchh----------ccCC
Confidence 467899999999997777776654 46999999999999999998776542 345555554321 2468
Q ss_pred ccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc------------------------CChh
Q 008457 455 FEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------------------VDEP 508 (564)
Q Consensus 455 fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~------------------------~~~~ 508 (564)
||+|++.+++.+. .....+++.+.+++ ++ .+++++..+. .+..
T Consensus 128 fD~v~~~~~l~~~~~~~~~~~l~~l~~~~-~~----------~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 196 (230)
T PRK07580 128 FDTVVCLDVLIHYPQEDAARMLAHLASLT-RG----------SLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREK 196 (230)
T ss_pred cCEEEEcchhhcCCHHHHHHHHHHHHhhc-CC----------eEEEEECCccHHHHHHHHhccccCCccCCCCccccCHH
Confidence 9999999988553 34455555555554 32 2223322210 1223
Q ss_pred HHHHHHHHcCCeEEEEcCC
Q 008457 509 SMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~~~~ 527 (564)
.+.+.+.+.||++.++...
T Consensus 197 ~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 197 GIRRALAAAGFKVVRTERI 215 (230)
T ss_pred HHHHHHHHCCCceEeeeec
Confidence 5667778889999888644
No 224
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.98 E-value=7.6e-09 Score=97.59 Aligned_cols=111 Identities=16% Similarity=0.120 Sum_probs=77.8
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
+...+.+...+.++.+|||||||+|.++..++.... .+|+++|+++++++.+++|+..++. .++.+...|....
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~----~~v~~~~~d~~~~ 140 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL----DNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCeEEEECCcccC
Confidence 334444444556889999999999988877766542 4799999999999999999998875 3466655544321
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
. ....+||+|+..... ..+.+.+.+.| +|+| ++++..
T Consensus 141 --~-----~~~~~fD~Ii~~~~~------~~~~~~~~~~L-~~gG--------~lv~~~ 177 (215)
T TIGR00080 141 --W-----EPLAPYDRIYVTAAG------PKIPEALIDQL-KEGG--------ILVMPV 177 (215)
T ss_pred --C-----cccCCCCEEEEcCCc------ccccHHHHHhc-CcCc--------EEEEEE
Confidence 0 113589999865432 33446678899 9988 777654
No 225
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.98 E-value=6.3e-10 Score=91.43 Aligned_cols=94 Identities=18% Similarity=0.294 Sum_probs=68.1
Q ss_pred EEEeCCcccHHHHHHHhcC----CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 380 VLELGCGCGGICSMVAAGS----ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 380 vLelG~G~G~l~~~~~~~~----~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
|||||||+|.....++... ..+++++|+|+++++.++++....+. ++++...|..+. +...++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-----~~~~~~~D~~~l-------~~~~~~~ 68 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-----KVRFVQADARDL-------PFSDGKF 68 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-----TSEEEESCTTCH-------HHHSSSE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-----ceEEEECCHhHC-------cccCCCe
Confidence 7999999997777777653 27999999999999999999876443 456666665432 2345699
Q ss_pred cEEEEece-ee--CCCChHHHHHHHHHHhhccCC
Q 008457 456 EVILGTDV-SY--IPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~d~-~y--~~~~~~~l~~~~~~ll~~~~g 486 (564)
|+|+++.. +. ..+....+++.+.++| +|+|
T Consensus 69 D~v~~~~~~~~~~~~~~~~~ll~~~~~~l-~pgG 101 (101)
T PF13649_consen 69 DLVVCSGLSLHHLSPEELEALLRRIARLL-RPGG 101 (101)
T ss_dssp EEEEE-TTGGGGSSHHHHHHHHHHHHHTE-EEEE
T ss_pred eEEEEcCCccCCCCHHHHHHHHHHHHHHh-CCCC
Confidence 99999654 33 3457899999999999 8865
No 226
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.98 E-value=7.1e-09 Score=108.58 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=98.9
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
+..|.+.+.......++.+|||||||+|.++..++... .+|+++|+|+.+++.+++|+..|+. .++.+...|+.+
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~----~~v~~~~~d~~~ 356 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL----DNVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC----CceEEEEeChHH
Confidence 45566666655445577899999999998877776654 7899999999999999999999886 347777776643
Q ss_pred CccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCe
Q 008457 441 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFR 520 (564)
Q Consensus 441 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~ 520 (564)
. +.. .++.+.+||+|++ |..|.. ....++.+.+ + ++++ .+|++.......-+ +..+.+.|++
T Consensus 357 ~--l~~-~~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~-~-~~~~--------ivyvSCnp~tlaRD--l~~L~~~gY~ 418 (443)
T PRK13168 357 D--FTD-QPWALGGFDKVLL-DPPRAG--AAEVMQALAK-L-GPKR--------IVYVSCNPATLARD--AGVLVEAGYR 418 (443)
T ss_pred h--hhh-hhhhcCCCCEEEE-CcCCcC--hHHHHHHHHh-c-CCCe--------EEEEEeChHHhhcc--HHHHhhCCcE
Confidence 2 111 0123457999874 666654 3455566655 3 4444 88888766554321 3444568999
Q ss_pred EEEEcCC
Q 008457 521 LVDKWPS 527 (564)
Q Consensus 521 ~~~~~~~ 527 (564)
++++-.+
T Consensus 419 l~~i~~~ 425 (443)
T PRK13168 419 LKRAGML 425 (443)
T ss_pred EEEEEEe
Confidence 9998633
No 227
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.97 E-value=1.7e-08 Score=94.94 Aligned_cols=159 Identities=13% Similarity=0.182 Sum_probs=114.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCC--cEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCcee
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPD--VFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
...+.+||||.||.|+...-.+..+|. ..+...|+|+..++.+++..+..+ .-++|.++|+.+..-... .+-..+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~-l~p~P~ 211 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAA-LDPAPT 211 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhc-cCCCCC
Confidence 357899999999999999888888776 689999999999999998776544 334999999876432212 133579
Q ss_pred EEEEcccccCCChhH-HHHHHHHHHhccCCCeEEEEEe--cCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 149 IVTMVFVLSAVSPEK-MSLVLQNIKKVLKPTGYVLFRD--YAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~-~~~~l~~~~r~LkpgG~lii~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
+++.+.+++.+++++ +...|..+.+.+.|||+++.+. |++......+.... ++-...|..+ .-+..++.
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~Lts-Hr~g~~WvMR-------rRsq~EmD 283 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTS-HRDGKAWVMR-------RRSQAEMD 283 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhc-ccCCCceEEE-------ecCHHHHH
Confidence 999999999999766 5568999999999999999875 33322211222111 0001112111 34899999
Q ss_pred HHHHhCCCcEEEeee
Q 008457 226 SLFKENGFDVEELGL 240 (564)
Q Consensus 226 ~~l~~aGf~~~~~~~ 240 (564)
++++.+||+.+....
T Consensus 284 ~Lv~~aGF~K~~q~I 298 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRI 298 (311)
T ss_pred HHHHHcCCchhhhee
Confidence 999999999766544
No 228
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.97 E-value=4e-10 Score=101.13 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=91.4
Q ss_pred CCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh-hhcCCCc
Q 008457 377 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EENNEGF 455 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~-~~~~~~f 455 (564)
=+++|||||||| +.+..+...+.+++++|+|..|++.+.+.-.-..+ -+. +...+. ...+.+|
T Consensus 126 F~~~lDLGCGTG-L~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L-------~~A--------ea~~Fl~~~~~er~ 189 (287)
T COG4976 126 FRRMLDLGCGTG-LTGEALRDMADRLTGVDISENMLAKAHEKGLYDTL-------YVA--------EAVLFLEDLTQERF 189 (287)
T ss_pred cceeeecccCcC-cccHhHHHHHhhccCCchhHHHHHHHHhccchHHH-------HHH--------HHHHHhhhccCCcc
Confidence 469999999999 77777776788999999999999887653111000 000 000011 1356799
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------ccC-ChhHHHHHHHHcCCeE
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------RQV-DEPSMLSAATQCGFRL 521 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-------------r~~-~~~~~~~~~~~~g~~~ 521 (564)
|+|.++||+-+--.++.++-.+..+| +|+| .|.++... |-- .+......++..||++
T Consensus 190 DLi~AaDVl~YlG~Le~~~~~aa~~L-~~gG--------lfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~ 260 (287)
T COG4976 190 DLIVAADVLPYLGALEGLFAGAAGLL-APGG--------LFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEV 260 (287)
T ss_pred cchhhhhHHHhhcchhhHHHHHHHhc-CCCc--------eEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceE
Confidence 99999999999999999999999999 9988 44444332 322 3356778889999999
Q ss_pred EEEcCCC
Q 008457 522 VDKWPSK 528 (564)
Q Consensus 522 ~~~~~~~ 528 (564)
..+-.+.
T Consensus 261 i~~~~tt 267 (287)
T COG4976 261 IAIEDTT 267 (287)
T ss_pred EEeeccc
Confidence 9986553
No 229
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.96 E-value=4.5e-09 Score=101.13 Aligned_cols=102 Identities=11% Similarity=0.119 Sum_probs=78.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..+.+|||||||+|.++..++..+. .+|+++|+++.+++.++.+... ++.+...|..+. +++++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--------~~~~~~~d~~~~-------~~~~~ 97 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE--------NVQFICGDAEKL-------PLEDS 97 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC--------CCeEEecchhhC-------CCCCC
Confidence 3567999999999988877776653 4799999999999988876531 234444443322 23456
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
+||+|+++.++.+..+...+++.+.++| +|+| .++++.
T Consensus 98 ~fD~vi~~~~l~~~~~~~~~l~~~~~~L-~~~G--------~l~~~~ 135 (240)
T TIGR02072 98 SFDLIVSNLALQWCDDLSQALSELARVL-KPGG--------LLAFST 135 (240)
T ss_pred ceeEEEEhhhhhhccCHHHHHHHHHHHc-CCCc--------EEEEEe
Confidence 8999999999999889999999999999 9988 777654
No 230
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.96 E-value=1.4e-08 Score=94.16 Aligned_cols=143 Identities=11% Similarity=0.153 Sum_probs=94.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.+...++......++++|+++++++.++++ + +.+...+..+. +.++.+++|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~-------~~~~~~d~~~~-----l~~~~~~sf 76 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G-------VNVIQGDLDEG-----LEAFPDKSF 76 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C-------CeEEEEEhhhc-----ccccCCCCc
Confidence 5679999999999877666655556789999999999877542 1 23333333211 112345689
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE--------------------------------eec
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH--------------------------------IFR 503 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~--------------------------------~~r 503 (564)
|+|+++.++.+..+...+++.+.+.+ +.. +++. ..+
T Consensus 77 D~Vi~~~~l~~~~d~~~~l~e~~r~~-~~~-----------ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (194)
T TIGR02081 77 DYVILSQTLQATRNPEEILDEMLRVG-RHA-----------IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIH 144 (194)
T ss_pred CEEEEhhHhHcCcCHHHHHHHHHHhC-CeE-----------EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcc
Confidence 99999999999888888888888777 431 1110 011
Q ss_pred cCChhHHHHHHHHcCCeEEEEcCCCCCCCCccccccccccCCCCc
Q 008457 504 QVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHE 548 (564)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (564)
..+...+.+.++++||++.+..-. +....-+-.-.|||+-.+.
T Consensus 145 ~~s~~~~~~ll~~~Gf~v~~~~~~--~~~~~~~~~~~~~~~~~~~ 187 (194)
T TIGR02081 145 FCTIADFEDLCGELNLRILDRAAF--DVDGRGGREVRWFPNLRGE 187 (194)
T ss_pred cCcHHHHHHHHHHCCCEEEEEEEe--ccccccccccccCcccccc
Confidence 223457889999999999987533 2222233344899964443
No 231
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.96 E-value=9.6e-09 Score=96.41 Aligned_cols=114 Identities=18% Similarity=0.093 Sum_probs=78.6
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
+..+..++.....+.++.+|||+|||+|.++..++... ..+|+++|+++++++.+++|+..++. .++.+..-|-
T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~----~~v~~~~gd~ 136 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY----DNVEVIVGDG 136 (212)
T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCeEEEECCc
Confidence 34445555555556688999999999998877766653 25999999999999999999998765 3455554442
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
... .....+||+|++.... +.+.+.+.+.| +|+| ++++..
T Consensus 137 ~~~-------~~~~~~fD~I~~~~~~------~~~~~~l~~~L-kpgG--------~lvi~~ 176 (212)
T PRK13942 137 TLG-------YEENAPYDRIYVTAAG------PDIPKPLIEQL-KDGG--------IMVIPV 176 (212)
T ss_pred ccC-------CCcCCCcCEEEECCCc------ccchHHHHHhh-CCCc--------EEEEEE
Confidence 211 0124689999865332 23345677789 9988 666653
No 232
>PRK06202 hypothetical protein; Provisional
Probab=98.95 E-value=1.1e-08 Score=97.88 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=66.3
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc----C-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG----S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE 449 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~----~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~ 449 (564)
.++.+|||||||+|.++..++.. + ..+|+++|+++.+++.++++...++. .+...+-. .+ +
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-------~~~~~~~~---~l----~ 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV-------TFRQAVSD---EL----V 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC-------eEEEEecc---cc----c
Confidence 36679999999999777666532 2 24899999999999999887654332 22222211 11 1
Q ss_pred hcCCCccEEEEeceeeCCCC--hHHHHHHHHHHh
Q 008457 450 ENNEGFEVILGTDVSYIPEA--ILPLFATAKELT 481 (564)
Q Consensus 450 ~~~~~fD~Ii~~d~~y~~~~--~~~l~~~~~~ll 481 (564)
..+++||+|+++.++++..+ ...+++.+.+++
T Consensus 125 ~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~ 158 (232)
T PRK06202 125 AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALA 158 (232)
T ss_pred ccCCCccEEEECCeeecCChHHHHHHHHHHHHhc
Confidence 13568999999999988665 457888998888
No 233
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=7.2e-09 Score=89.91 Aligned_cols=144 Identities=20% Similarity=0.322 Sum_probs=99.6
Q ss_pred hHHHHHHHHhcCCC-C--CCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEE
Q 008457 360 SAHLMAAVLARNPT-I--VAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK 434 (564)
Q Consensus 360 ~~~~l~~~l~~~~~-~--~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~ 434 (564)
.+++|.+-|..... + ....-+||||||+|.++..++.. +...+.+||+||.+++..++.+..|+.. +.+.
T Consensus 24 DTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-----~~~V 98 (209)
T KOG3191|consen 24 DTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-----IDVV 98 (209)
T ss_pred hhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-----ccee
Confidence 34555555554211 1 12567999999999777666664 3458999999999999999999988753 2322
Q ss_pred EeecCCCccchhhhhhcCCCccEEEEeceeeCC----------------------CChHHHHHHHHHHhhccCCCCCCCC
Q 008457 435 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP----------------------EAILPLFATAKELTASSNKSLREDQ 492 (564)
Q Consensus 435 ~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~----------------------~~~~~l~~~~~~ll~~~~g~~~~~~ 492 (564)
.-|. .. .+..++.|+++-+. .|-+ +..+.|+..+..+| +|.|
T Consensus 99 ~tdl-----~~---~l~~~~VDvLvfNP-PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iL-Sp~G------ 162 (209)
T KOG3191|consen 99 RTDL-----LS---GLRNESVDVLVFNP-PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDIL-SPRG------ 162 (209)
T ss_pred ehhH-----Hh---hhccCCccEEEECC-CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhc-CcCc------
Confidence 2222 22 23447999887543 2321 23678888889999 9988
Q ss_pred CcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 493 QPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 493 ~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
++|+....++... +.+..++..||.+...+..
T Consensus 163 --v~Ylv~~~~N~p~-ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 163 --VFYLVALRANKPK-EILKILEKKGYGVRIAMQR 194 (209)
T ss_pred --eEEeeehhhcCHH-HHHHHHhhcccceeEEEEE
Confidence 8998877666544 6788888999999988744
No 234
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.95 E-value=4.8e-09 Score=94.95 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=77.9
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCce
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+.+...++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++... ..+++++.+|+.... +++..|
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~----~~~~~~ 78 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFD----LPKLQP 78 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCC----ccccCC
Confidence 34444467789999999999999999988 67899999999999999988753 357899999986543 345579
Q ss_pred eEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
|.|+++--++ ++...+..+++.. .+.++|.+++.
T Consensus 79 d~vi~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 79 YKVVGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred CEEEECCCcc-cHHHHHHHHHhcC--CCcceEEEEEE
Confidence 9999875443 4323334443322 24577888774
No 235
>PRK01581 speE spermidine synthase; Validated
Probab=98.95 E-value=3.1e-08 Score=97.75 Aligned_cols=108 Identities=21% Similarity=0.249 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcc--------cccCCCeeEEEecCCcccccCCCCCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK--------DFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~--------~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
..+.+||+||||+|..++.+++..+..+|+++|+++++++.|+... .....+++++.+|....- .-..+
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL---~~~~~ 225 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL---SSPSS 225 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH---HhcCC
Confidence 5678999999999999888887655579999999999999999631 112468899999986421 11356
Q ss_pred ceeEEEEccccc---CCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 146 SIDIVTMVFVLS---AVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 146 ~fD~V~~~~vl~---~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+||+|++...-. ....---..+++.+++.|+|||++++.
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 899999964211 111112356899999999999998875
No 236
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.94 E-value=2.5e-09 Score=97.25 Aligned_cols=111 Identities=19% Similarity=0.259 Sum_probs=79.4
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh--cC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~--~~ 452 (564)
.++.+||||.||||.++..++++++++|+++|.|+.++..+++|++.-+.. .++.+...| ....+..+ ..
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~---~~~~v~~~d-----~~~~l~~~~~~~ 112 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE---DKIRVIKGD-----AFKFLLKLAKKG 112 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G---GGEEEEESS-----HHHHHHHHHHCT
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC---cceeeeccC-----HHHHHHhhcccC
Confidence 589999999999999999999999999999999999999999999987764 234444332 22233222 46
Q ss_pred CCccEEEEeceeeCCCCh-HHHHHHHH--HHhhccCCCCCCCCCcEEEEEEeec
Q 008457 453 EGFEVILGTDVSYIPEAI-LPLFATAK--ELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~-~~l~~~~~--~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
.+||+|+ .|+.|..... +.++..+. .+| +++| .+++-+..+
T Consensus 113 ~~fDiIf-lDPPY~~~~~~~~~l~~l~~~~~l-~~~~--------~ii~E~~~~ 156 (183)
T PF03602_consen 113 EKFDIIF-LDPPYAKGLYYEELLELLAENNLL-NEDG--------LIIIEHSKK 156 (183)
T ss_dssp S-EEEEE-E--STTSCHHHHHHHHHHHHTTSE-EEEE--------EEEEEEETT
T ss_pred CCceEEE-ECCCcccchHHHHHHHHHHHCCCC-CCCE--------EEEEEecCC
Confidence 7999876 7999998884 88998887 688 7765 666655544
No 237
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.94 E-value=2.6e-08 Score=99.35 Aligned_cols=115 Identities=13% Similarity=0.129 Sum_probs=86.4
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
+..+.....+.++.+|||+|||+|.++..++...+ .+++++|. |.+++.+++|+...+.. +++.+...|..+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~---~rv~~~~~d~~~~-- 211 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA---DRMRGIAVDIYKE-- 211 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc---ceEEEEecCccCC--
Confidence 34444444555778999999999988887877654 58999998 89999999999988764 5677776665432
Q ss_pred chhhhhhcCCCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
++ ..+|+|+.+-++++.. ....+++.+.+.| +|+| ++++...
T Consensus 212 -----~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L-~pgG--------~l~i~d~ 255 (306)
T TIGR02716 212 -----SY--PEADAVLFCRILYSANEQLSTIMCKKAFDAM-RSGG--------RLLILDM 255 (306)
T ss_pred -----CC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhc-CCCC--------EEEEEEe
Confidence 11 2479999998887654 3467999999999 9988 7766643
No 238
>PLN02672 methionine S-methyltransferase
Probab=98.94 E-value=1.4e-08 Score=113.93 Aligned_cols=154 Identities=21% Similarity=0.205 Sum_probs=106.2
Q ss_pred chhHHHHHHHHhcCCC-CCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCC---------
Q 008457 358 WESAHLMAAVLARNPT-IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPP--------- 426 (564)
Q Consensus 358 W~~~~~l~~~l~~~~~-~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~--------- 426 (564)
=+.+..|.+.+...+. .+++.+|||||||+|.++..++... ..+|+++|+|+++++.+++|+..|++..
T Consensus 99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~ 178 (1082)
T PLN02672 99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE 178 (1082)
T ss_pred chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence 3667777877655432 2456799999999998888888765 3699999999999999999999986531
Q ss_pred ---CCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceee---------------CC----------C----------
Q 008457 427 ---FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY---------------IP----------E---------- 468 (564)
Q Consensus 427 ---~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y---------------~~----------~---------- 468 (564)
...++.+..-||.+. . .. ...+||+||++...- .+ .
T Consensus 179 ~~~l~~rV~f~~sDl~~~--~---~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d 252 (1082)
T PLN02672 179 GKTLLDRVEFYESDLLGY--C---RD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF 252 (1082)
T ss_pred cccccccEEEEECchhhh--c---cc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc
Confidence 124577777777532 1 00 113699999774311 00 0
Q ss_pred ---ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHH-HHHHHcCCeEEEEcCCC
Q 008457 469 ---AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML-SAATQCGFRLVDKWPSK 528 (564)
Q Consensus 469 ---~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~g~~~~~~~~~~ 528 (564)
.+..++....++| +|+| .+++-...++.. ... +.+.+.||+..++|...
T Consensus 253 GL~~yr~i~~~a~~~L-~pgG--------~l~lEiG~~q~~--~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 253 GLGLIARAVEEGISVI-KPMG--------IMIFNMGGRPGQ--AVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred HHHHHHHHHHHHHHhc-cCCC--------EEEEEECccHHH--HHHHHHHHHCCCCeeEEeeeh
Confidence 1255677777888 8887 776655544432 455 46678999999998763
No 239
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.92 E-value=2.4e-08 Score=104.64 Aligned_cols=114 Identities=19% Similarity=0.231 Sum_probs=85.7
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+...++.+|||+|||+|..+..+++.. ++.+|+++|+|+.+++.++++....+ .++++.+.|+... .++++|
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~-----~~~~~f 319 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF-----SPEEQP 319 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc-----ccCCCC
Confidence 4455678999999999999998888764 35699999999999999998876544 3688888888542 145689
Q ss_pred eEEEEc---c---ccc-------CCChh-------HHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 148 DIVTMV---F---VLS-------AVSPE-------KMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 148 D~V~~~---~---vl~-------~~~~~-------~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
|+|++- . ++. +.+++ ....+|.++.+.|||||++++++-..
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999962 1 111 12222 23468999999999999999987554
No 240
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=2.4e-08 Score=104.78 Aligned_cols=116 Identities=15% Similarity=0.173 Sum_probs=85.9
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
..+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++....+ .++.++++|+.... ..++ ++
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~--~~~~-~~ 320 (444)
T PRK14902 244 PALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH--EKFA-EK 320 (444)
T ss_pred HHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc--chhc-cc
Confidence 34555778999999999999999999874 56799999999999999998875444 45889999986431 1223 68
Q ss_pred eeEEEEccc------ccCCC-------hhH-------HHHHHHHHHhccCCCeEEEEEecC
Q 008457 147 IDIVTMVFV------LSAVS-------PEK-------MSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 147 fD~V~~~~v------l~~~~-------~~~-------~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
||+|++..- +.+-| +.+ ...+|..+.++|||||.++.++-.
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 999998431 11111 112 346899999999999999976543
No 241
>PTZ00146 fibrillarin; Provisional
Probab=98.91 E-value=5.3e-08 Score=93.64 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=96.4
Q ss_pred ceechhHH-HHHHHHhc---CCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCC
Q 008457 355 LMLWESAH-LMAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFL 428 (564)
Q Consensus 355 ~~~W~~~~-~l~~~l~~---~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~ 428 (564)
..+|+.-+ .||..++. ...+.++.+|||||||+|..+..++... ...|+++|+++++++.+..-+...
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r------ 180 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR------ 180 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------
Confidence 78886643 46655544 2345688899999999998888888764 358999999988764444322210
Q ss_pred CceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh-
Q 008457 429 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE- 507 (564)
Q Consensus 429 ~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~- 507 (564)
.++....-|.... ..+ ......||+|++ |+. .+.....++..+.++| +|+| .+++....+..+.
T Consensus 181 ~NI~~I~~Da~~p---~~y-~~~~~~vDvV~~-Dva-~pdq~~il~~na~r~L-KpGG--------~~vI~ika~~id~g 245 (293)
T PTZ00146 181 PNIVPIIEDARYP---QKY-RMLVPMVDVIFA-DVA-QPDQARIVALNAQYFL-KNGG--------HFIISIKANCIDST 245 (293)
T ss_pred CCCEEEECCccCh---hhh-hcccCCCCEEEE-eCC-CcchHHHHHHHHHHhc-cCCC--------EEEEEEeccccccC
Confidence 1233333332211 011 112347999874 543 4555667778899999 9988 7777655543321
Q ss_pred ---hHH----HHHHHHcCCeEEEEcCC
Q 008457 508 ---PSM----LSAATQCGFRLVDKWPS 527 (564)
Q Consensus 508 ---~~~----~~~~~~~g~~~~~~~~~ 527 (564)
... .+++++.||++.+....
T Consensus 246 ~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 246 AKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred CCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 222 46688899999988754
No 242
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.91 E-value=4.5e-08 Score=91.47 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=82.0
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh-hhh
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI-KEE 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~-~~~ 450 (564)
+.++.+|||||||+|.++..++... ..+|+++|+++ + +.. ..+.+...|..+....+.+ ..+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~----~~v~~i~~D~~~~~~~~~i~~~~ 113 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI----VGVDFLQGDFRDELVLKALLERV 113 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC----CCcEEEecCCCChHHHHHHHHHh
Confidence 4578899999999998887777764 35899999987 1 111 2366666776654222222 134
Q ss_pred cCCCccEEEEeceeeCCC-----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCC
Q 008457 451 NNEGFEVILGTDVSYIPE-----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF 519 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~-----------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~ 519 (564)
..++||+|++.-+.+... .+..+++.+.++| +|+| .+++.. .+......++..+. ..|
T Consensus 114 ~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~L-kpGG--------~~vi~~-~~~~~~~~~l~~l~-~~f 182 (209)
T PRK11188 114 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVL-APGG--------SFVVKV-FQGEGFDEYLREIR-SLF 182 (209)
T ss_pred CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHc-CCCC--------EEEEEE-ecCcCHHHHHHHHH-hCc
Confidence 567899999754333221 1356889999999 9988 777753 33344446666554 366
Q ss_pred eEEEEc
Q 008457 520 RLVDKW 525 (564)
Q Consensus 520 ~~~~~~ 525 (564)
.-.++.
T Consensus 183 ~~v~~~ 188 (209)
T PRK11188 183 TKVKVR 188 (209)
T ss_pred eEEEEE
Confidence 666665
No 243
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.91 E-value=5.4e-09 Score=96.24 Aligned_cols=110 Identities=23% Similarity=0.328 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-cCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
....+||||||.|.++..++..+|+..++|+|+....+..|.++... ...|+.++++|+... +..-++++++|.|+.+
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~-l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL-LRRLFPPGSVDRIYIN 95 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH-HHHHSTTTSEEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH-HhhcccCCchheEEEe
Confidence 33489999999999999999999999999999999999888877654 347999999998652 2223467899999997
Q ss_pred ccccCCChh------HHHHHHHHHHhccCCCeEEEEEe
Q 008457 154 FVLSAVSPE------KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 154 ~vl~~~~~~------~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+-=-|.-.. --..++..+.++|+|||.|.+.+
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 754443211 13479999999999999999865
No 244
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.90 E-value=9.1e-09 Score=93.17 Aligned_cols=99 Identities=23% Similarity=0.257 Sum_probs=75.0
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
...+.+++||||||.|.-+..++.+|. .|+++|.|+.+++.+++-++..+++ |++...|..+.. + +
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~-----i~~~~~Dl~~~~-------~-~ 92 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD-----IRTRVADLNDFD-------F-P 92 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T-----EEEEE-BGCCBS---------T
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce-----eEEEEecchhcc-------c-c
Confidence 345788999999999988888887765 7999999999999998887776653 777777765431 2 3
Q ss_pred CCccEEEEeceeeC--CCChHHHHHHHHHHhhccCC
Q 008457 453 EGFEVILGTDVSYI--PEAILPLFATAKELTASSNK 486 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~--~~~~~~l~~~~~~ll~~~~g 486 (564)
+.||+|++.-++.+ .+..+.+++.++..+ +|+|
T Consensus 93 ~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~-~pGG 127 (192)
T PF03848_consen 93 EEYDFIVSTVVFMFLQRELRPQIIENMKAAT-KPGG 127 (192)
T ss_dssp TTEEEEEEESSGGGS-GGGHHHHHHHHHHTE-EEEE
T ss_pred CCcCEEEEEEEeccCCHHHHHHHHHHHHhhc-CCcE
Confidence 58999997655443 668889999999999 9987
No 245
>PRK05785 hypothetical protein; Provisional
Probab=98.90 E-value=9.8e-09 Score=97.23 Aligned_cols=89 Identities=19% Similarity=0.179 Sum_probs=69.4
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||||||||.++..++.....+|+++|+|++|++.+++.. ..+ ..+.. .+ ++++++|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~---~~d~~------~l-p~~d~sf 111 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKV---VGSFE------AL-PFRDKSF 111 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceE---Eechh------hC-CCCCCCE
Confidence 36799999999997777776654569999999999999887631 111 11111 11 4567899
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhcc
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASS 484 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~ 484 (564)
|+|+++.++.+..+.+.+++.+.++| +|
T Consensus 112 D~v~~~~~l~~~~d~~~~l~e~~RvL-kp 139 (226)
T PRK05785 112 DVVMSSFALHASDNIEKVIAEFTRVS-RK 139 (226)
T ss_pred EEEEecChhhccCCHHHHHHHHHHHh-cC
Confidence 99999999999999999999999999 77
No 246
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.90 E-value=1.5e-08 Score=89.86 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=82.0
Q ss_pred CeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccE
Q 008457 378 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV 457 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~ 457 (564)
..|||+|||||.---.+--....+|+++|.++.|-+.+.+.+..|... .+. .+.... .+.+..++++++|+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~----~~~--~fvva~---ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL----QVE--RFVVAD---GENLPQLADGSYDT 148 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc----ceE--EEEeec---hhcCcccccCCeee
Confidence 468999999994333333334569999999999999999999888442 222 222222 22333467889999
Q ss_pred EEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC
Q 008457 458 ILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV 505 (564)
Q Consensus 458 Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~ 505 (564)
|+++=|+-..++....++.+.++| +|+| ++++--+.+.+
T Consensus 149 VV~TlvLCSve~~~k~L~e~~rlL-RpgG--------~iifiEHva~~ 187 (252)
T KOG4300|consen 149 VVCTLVLCSVEDPVKQLNEVRRLL-RPGG--------RIIFIEHVAGE 187 (252)
T ss_pred EEEEEEEeccCCHHHHHHHHHHhc-CCCc--------EEEEEeccccc
Confidence 999999999999999999999999 9988 77766555543
No 247
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.89 E-value=1.6e-08 Score=106.02 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=81.1
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|+++....+ .+++++++|+.......++.++
T Consensus 289 vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~ 366 (443)
T PRK13168 289 ALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALG 366 (443)
T ss_pred HHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcC
Confidence 334455567889999999999999999988 4789999999999999998765433 4689999998542111124456
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+||+|+++- |.......++.+.+ ++|++.++++.
T Consensus 367 ~fD~Vi~dP-----Pr~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 367 GFDKVLLDP-----PRAGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred CCCEEEECc-----CCcChHHHHHHHHh-cCCCeEEEEEe
Confidence 899998833 22223345655555 69999999874
No 248
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.89 E-value=9.6e-09 Score=97.71 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=84.0
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccc--ccCCCCCC
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDD--LSRQISPS 145 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~~~ 145 (564)
....++.+|||+|||+|.-+..++... ++.+|+++|+++++++.|++++...+ .+++++.+|+...- +....+.+
T Consensus 64 ~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 64 VKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred HHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 334678899999999999988888764 46799999999999999999876544 57899999885421 10011246
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+||+|++... ......++..+.++|+|||.+++..
T Consensus 144 ~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 144 EFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 8999988432 2455678999999999999988754
No 249
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.89 E-value=1.2e-08 Score=94.41 Aligned_cols=129 Identities=9% Similarity=0.023 Sum_probs=88.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh-hcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-ENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-~~~~ 453 (564)
...+|||||||+|.++..++... ..+|+++|+++.+++.+++|+..+++ .++.+...|..+. ... ++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l----~ni~~i~~d~~~~-----~~~~~~~~ 86 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL----KNLHVLCGDANEL-----LDKFFPDG 86 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC----CCEEEEccCHHHH-----HHhhCCCC
Confidence 45689999999998877777654 45899999999999999999988765 3566554443211 111 2345
Q ss_pred CccEEEEec-eeeCCC-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcC-CeEEE
Q 008457 454 GFEVILGTD-VSYIPE-------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG-FRLVD 523 (564)
Q Consensus 454 ~fD~Ii~~d-~~y~~~-------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g-~~~~~ 523 (564)
.+|.|+..= ..+... ..+.+++.+.++| +|+| .+++++....... .+.+.+.+.+ |....
T Consensus 87 ~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~L-kpgG--------~l~~~td~~~~~~-~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 87 SLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVL-KKGG--------VIHFKTDNEPLFE-DMLKVLSENDLFENTS 155 (194)
T ss_pred ceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHh-CCCC--------EEEEEeCCHHHHH-HHHHHHHhCCCeEecc
Confidence 899988652 122221 1278999999999 9988 8888765554332 4566666665 66554
No 250
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.88 E-value=2.3e-08 Score=97.11 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=84.9
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+.+.++.+|||+|||+|..+..+++... ..+|+++|+++.+++.++++....+ .++.+...|..... ...++|
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~----~~~~~f 141 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG----AAVPKF 141 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh----hhccCC
Confidence 44557889999999999999999988743 4689999999999999998876544 46788888875321 134569
Q ss_pred eEEEEcc------cccC-------CChh-------HHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 148 DIVTMVF------VLSA-------VSPE-------KMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 148 D~V~~~~------vl~~-------~~~~-------~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
|+|++.. ++.+ .+++ ....+|+++.++|||||+|+.++-..
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999732 2221 1111 23569999999999999999876443
No 251
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.87 E-value=2.2e-08 Score=103.96 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=87.7
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
..+.+.++.+|||+|||+|..+.++++.. ++.+|+++|+++.+++.++++....+ .++.+.+.|..... .+..++
T Consensus 231 ~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~---~~~~~~ 307 (431)
T PRK14903 231 LLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT---EYVQDT 307 (431)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh---hhhhcc
Confidence 34556788999999999999999998874 46799999999999999998876544 35788888875421 123568
Q ss_pred eeEEEEcc---cccCC----------Ch-------hHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 147 IDIVTMVF---VLSAV----------SP-------EKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 147 fD~V~~~~---vl~~~----------~~-------~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
||.|++.. .+..+ ++ ....++|.++.+.|||||.++.++-..
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99999732 22222 11 134677999999999999999876554
No 252
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.86 E-value=1.2e-08 Score=95.24 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=95.0
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCC-CeeEEEecCCcccccCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-RVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~ 144 (564)
.|.+++.......+||||||.|.++..+|+..|...++|||+....+..|.++....+. |+.+++.|+.... ..-+++
T Consensus 39 ~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l-~~~~~~ 117 (227)
T COG0220 39 DWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVL-DYLIPD 117 (227)
T ss_pred hHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHH-HhcCCC
Confidence 34455554445789999999999999999999999999999999999999888877777 9999999986432 212355
Q ss_pred CceeEEEEcccccCCC------hhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 145 SSIDIVTMVFVLSAVS------PEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~------~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++.|-|+.++-=-|-- +--...+++.+.++|+|||.|.+.+-.
T Consensus 118 ~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 118 GSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 6999999987654431 112457999999999999999997543
No 253
>PLN02366 spermidine synthase
Probab=98.86 E-value=1.5e-08 Score=99.61 Aligned_cols=109 Identities=15% Similarity=0.171 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----cCCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
.++.+||+||||.|..++.+++..+..+|+.+|+++.+++.|++.+.. ...+++++.+|....-. ..++++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~--~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK--NAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh--hccCCCCC
Confidence 568999999999999999998763346899999999999999997643 23589999999743211 12356899
Q ss_pred EEEEcccccCCChh--HHHHHHHHHHhccCCCeEEEEE
Q 008457 149 IVTMVFVLSAVSPE--KMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 149 ~V~~~~vl~~~~~~--~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+|++-..-.+.+.. --..+++.+++.|+|||+++..
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 99995543332211 1356899999999999999763
No 254
>PHA03411 putative methyltransferase; Provisional
Probab=98.85 E-value=3.2e-08 Score=94.02 Aligned_cols=126 Identities=15% Similarity=0.078 Sum_probs=87.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
...+|||+|||+|.++..++... ..+|+++|+++.+++.+++|.. .+.+..-|.. + + ....+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~---------~v~~v~~D~~-----e-~--~~~~k 126 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP---------EAEWITSDVF-----E-F--ESNEK 126 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc---------CCEEEECchh-----h-h--cccCC
Confidence 45689999999997777666654 5699999999999999998731 1222222211 1 1 12358
Q ss_pred ccEEEEeceeeCCC--------------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-----CChhH
Q 008457 455 FEVILGTDVSYIPE--------------------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-----VDEPS 509 (564)
Q Consensus 455 fD~Ii~~d~~y~~~--------------------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-----~~~~~ 509 (564)
||+|+++...++.. .+..++.....+| +|+| .+++++..+. .+.++
T Consensus 127 FDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L-~p~G--------~~~~~yss~~~y~~sl~~~~ 197 (279)
T PHA03411 127 FDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFI-VPTG--------SAGFAYSGRPYYDGTMKSNK 197 (279)
T ss_pred CcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHhee-cCCc--------eEEEEEeccccccccCCHHH
Confidence 99999887766421 1467778888888 8887 7777766643 23467
Q ss_pred HHHHHHHcCCeEEEEcCC
Q 008457 510 MLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 510 ~~~~~~~~g~~~~~~~~~ 527 (564)
....+++.||....-+.+
T Consensus 198 y~~~l~~~g~~~~~~~~~ 215 (279)
T PHA03411 198 YLKWSKQTGLVTYAGCGI 215 (279)
T ss_pred HHHHHHhcCcEecCCCCc
Confidence 788889999998765544
No 255
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=3.1e-09 Score=95.29 Aligned_cols=155 Identities=16% Similarity=0.160 Sum_probs=113.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
+....++|||||.|...++|..+. -.+++-+|-|-.|++.++.... ......+..+|-... +|.++++|+|++.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-p~i~~~~~v~DEE~L----df~ens~DLiisS 144 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-PSIETSYFVGDEEFL----DFKENSVDLIISS 144 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-CceEEEEEecchhcc----cccccchhhhhhh
Confidence 456789999999999999998884 3479999999999998876532 233445566665432 5789999999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceee---ccCHHHHHHHHHh
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAF---YFSNDFLTSLFKE 230 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~ 230 (564)
..+||+ +++...+.+++..|||+|.++.+-++.......+..-....+.+ ..|..++ +-...++..++.+
T Consensus 145 lslHW~--NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER-----~GGiSphiSPf~qvrDiG~LL~r 217 (325)
T KOG2940|consen 145 LSLHWT--NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELER-----EGGISPHISPFTQVRDIGNLLTR 217 (325)
T ss_pred hhhhhh--ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHh-----ccCCCCCcChhhhhhhhhhHHhh
Confidence 999999 68889999999999999999988777666555543322221111 1222221 3456889999999
Q ss_pred CCCcEEEeeee
Q 008457 231 NGFDVEELGLC 241 (564)
Q Consensus 231 aGf~~~~~~~~ 241 (564)
|||....+...
T Consensus 218 AGF~m~tvDtD 228 (325)
T KOG2940|consen 218 AGFSMLTVDTD 228 (325)
T ss_pred cCcccceeccc
Confidence 99988765443
No 256
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.84 E-value=5.5e-08 Score=89.70 Aligned_cols=137 Identities=16% Similarity=0.215 Sum_probs=85.6
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
.+.+.......+.++.+|||+|||+|+++..++... ..+|+++|+++.+ .. ..+.+...|..+
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~----~~i~~~~~d~~~ 83 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI----ENVDFIRGDFTD 83 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC----CCceEEEeeCCC
Confidence 445555555666789999999999998887777654 4589999999853 11 234555556554
Q ss_pred Cccchhhh-hhcCCCccEEEEeceee-----CCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh
Q 008457 441 RDHIEAIK-EENNEGFEVILGTDVSY-----IPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP 508 (564)
Q Consensus 441 ~~~~~~~~-~~~~~~fD~Ii~~d~~y-----~~~------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~ 508 (564)
....+.+. ....++||+|++.-..+ ... ..+.+++.+.++| +|+| ++++.. .......
T Consensus 84 ~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~lvi~~-~~~~~~~ 153 (188)
T TIGR00438 84 EEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVL-KPKG--------NFVVKV-FQGEEID 153 (188)
T ss_pred hhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHc-cCCC--------EEEEEE-ccCccHH
Confidence 32222222 23456899999642211 111 2367899999999 9988 777643 2223333
Q ss_pred HHHHHHHHcCCeEEEEc
Q 008457 509 SMLSAATQCGFRLVDKW 525 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~~ 525 (564)
.++..++. +|...++.
T Consensus 154 ~~l~~l~~-~~~~~~~~ 169 (188)
T TIGR00438 154 EYLNELRK-LFEKVKVT 169 (188)
T ss_pred HHHHHHHh-hhceEEEe
Confidence 56666655 46656554
No 257
>PLN02672 methionine S-methyltransferase
Probab=98.84 E-value=3.2e-08 Score=111.07 Aligned_cols=133 Identities=24% Similarity=0.352 Sum_probs=93.9
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-----------------CCCeeEEEecCCcccc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----------------ETRVSTFVCDLISDDL 138 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-----------------~~~i~~~~~d~~~~~~ 138 (564)
+.+|||+|||+|..+..++..++..+|+|+|+|+.+++.|+.+.... ..+++++++|+.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999988789999999999999998876432 1368999999864211
Q ss_pred cCCCCCCceeEEEEccc--c----cCCC------------------------------hhHHHHHHHHHHhccCCCeEEE
Q 008457 139 SRQISPSSIDIVTMVFV--L----SAVS------------------------------PEKMSLVLQNIKKVLKPTGYVL 182 (564)
Q Consensus 139 ~~~~~~~~fD~V~~~~v--l----~~~~------------------------------~~~~~~~l~~~~r~LkpgG~li 182 (564)
. ...+||+|++|=- . ..++ .+-.++++.++.++|+|||.++
T Consensus 199 --~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 199 --D-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred --c-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 0 1236999999532 1 0110 0123677888889999999988
Q ss_pred EEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH-HHHHhCCCcEEEeeeee
Q 008457 183 FRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT-SLFKENGFDVEELGLCC 242 (564)
Q Consensus 183 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~aGf~~~~~~~~~ 242 (564)
+.. +.. ..+.+. ++|++.||..+.++...
T Consensus 276 lEi-G~~------------------------------q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 276 FNM-GGR------------------------------PGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred EEE-Ccc------------------------------HHHHHHHHHHHHCCCCeeEEeeeh
Confidence 742 211 245566 58888888876655443
No 258
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.7e-07 Score=82.73 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=91.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
..+.+|+|+|||||.++...+-.+ ..+|+|+|+++++++.++++......++.|+++|+.. ..+.+|.|+.|
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~-------~~~~~dtvimN 115 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSD-------FRGKFDTVIMN 115 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhh-------cCCccceEEEC
Confidence 578899999999999998877764 4689999999999999999988777899999999965 34678888885
Q ss_pred ccccCCC-hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 154 FVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 154 ~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
=-+.-.- ..|. .++....+.- -++.+-+.. -+.+.+++..+.+|
T Consensus 116 PPFG~~~rhaDr-~Fl~~Ale~s----~vVYsiH~a------------------------------~~~~f~~~~~~~~G 160 (198)
T COG2263 116 PPFGSQRRHADR-PFLLKALEIS----DVVYSIHKA------------------------------GSRDFVEKFAADLG 160 (198)
T ss_pred CCCccccccCCH-HHHHHHHHhh----heEEEeecc------------------------------ccHHHHHHHHHhcC
Confidence 4333221 1132 3444444433 122221111 15788899999999
Q ss_pred CcEEEeeeeeccccc
Q 008457 233 FDVEELGLCCKQVEN 247 (564)
Q Consensus 233 f~~~~~~~~~~~~~~ 247 (564)
+.+...+...-+++.
T Consensus 161 ~~v~~~~~~~~~iP~ 175 (198)
T COG2263 161 GTVTHIERARFPIPR 175 (198)
T ss_pred CeEEEEEEEEEecCc
Confidence 988876554444433
No 259
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.82 E-value=3.3e-08 Score=91.92 Aligned_cols=90 Identities=10% Similarity=0.052 Sum_probs=63.0
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.++.+|||+|||+|.+...++.. +..+|+++|+|+++++.++++.. .+.+...+..+ +..++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~--------~~~~~ 104 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFD--------PFKDN 104 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccC--------CCCCC
Confidence 36779999999999777766665 45689999999999999988642 12233333221 23467
Q ss_pred CccEEEEeceeeCCC--ChHHHHHHHHHHh
Q 008457 454 GFEVILGTDVSYIPE--AILPLFATAKELT 481 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll 481 (564)
+||+|++..++++.. .+..+++.+.+++
T Consensus 105 sfD~V~~~~vL~hl~p~~~~~~l~el~r~~ 134 (204)
T TIGR03587 105 FFDLVLTKGVLIHINPDNLPTAYRELYRCS 134 (204)
T ss_pred CEEEEEECChhhhCCHHHHHHHHHHHHhhc
Confidence 999999999998753 3455555555555
No 260
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.82 E-value=1.3e-08 Score=98.43 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=84.9
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchh
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA 446 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~ 446 (564)
.+.++..+++++.|||+|||||.++..++..|+++|+++|.+ ++.+.+++.+..|++. +.|.+..-.-.+ +
T Consensus 51 ~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S-~ia~~a~~iv~~N~~~---~ii~vi~gkvEd---i-- 121 (346)
T KOG1499|consen 51 AILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEAS-SIADFARKIVKDNGLE---DVITVIKGKVED---I-- 121 (346)
T ss_pred HHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEech-HHHHHHHHHHHhcCcc---ceEEEeecceEE---E--
Confidence 345677889999999999999988888888899999999996 5669999999999985 445554332221 1
Q ss_pred hhhhcCCCccEEEEec---eeeCCCChHHHHHHHHHHhhccCCC
Q 008457 447 IKEENNEGFEVILGTD---VSYIPEAILPLFATAKELTASSNKS 487 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d---~~y~~~~~~~l~~~~~~ll~~~~g~ 487 (564)
.+|.+++|+|++-. +++....++..+-.=.+.| +++|-
T Consensus 122 --~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL-~~~G~ 162 (346)
T KOG1499|consen 122 --ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWL-KEGGL 162 (346)
T ss_pred --ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhcc-CCCce
Confidence 34557999999665 4556778888888888999 88883
No 261
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.82 E-value=2e-08 Score=98.04 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-----CCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----ETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+.+||+||||+|..+..+++..+..+++++|+++.+++.|++..... ..++++...|....-. -..++||
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~---~~~~~yD 147 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA---DTENTFD 147 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH---hCCCCcc
Confidence 4556999999999999988887755678999999999999999875321 2467777777643110 1246899
Q ss_pred EEEEcccccCCChhH--HHHHHHHHHhccCCCeEEEEE
Q 008457 149 IVTMVFVLSAVSPEK--MSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~--~~~~l~~~~r~LkpgG~lii~ 184 (564)
+|++......-+... ...+++.+++.|+|||++++.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 999965432222122 467899999999999999985
No 262
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.81 E-value=8.8e-08 Score=90.22 Aligned_cols=113 Identities=14% Similarity=0.039 Sum_probs=77.7
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 362 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 362 ~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
..+..++.......++.+|||+|||+|.++..++.. ..+|+++|.++.+++.+++|+..++. ..+.+..-|..+.
T Consensus 64 p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~ 138 (212)
T PRK00312 64 PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGL----HNVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCC----CceEEEECCcccC
Confidence 334455554445567889999999999777655554 35899999999999999999988765 2355554443221
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
. ...++||+|++.-. ...+.+.+.++| +|+| .+++...
T Consensus 139 --~-----~~~~~fD~I~~~~~------~~~~~~~l~~~L-~~gG--------~lv~~~~ 176 (212)
T PRK00312 139 --W-----PAYAPFDRILVTAA------APEIPRALLEQL-KEGG--------ILVAPVG 176 (212)
T ss_pred --C-----CcCCCcCEEEEccC------chhhhHHHHHhc-CCCc--------EEEEEEc
Confidence 0 02358999986543 234456778899 9988 7766654
No 263
>PLN03075 nicotianamine synthase; Provisional
Probab=98.81 E-value=6.2e-08 Score=93.62 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=90.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHh-cCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 376 AGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTA-NLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~-n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
..++|+|+|||.|+++.++++. ...+++++|.++++++.+++++.. .++. .++.+...|..+.. ..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~---~rV~F~~~Da~~~~-------~~ 192 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS---KRMFFHTADVMDVT-------ES 192 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc---CCcEEEECchhhcc-------cc
Confidence 7789999999988777665542 345899999999999999999864 4442 56787776654321 01
Q ss_pred CCCccEEEEeceeeC-CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--ccCChhHHHHHHHHcCCeEEEEc
Q 008457 452 NEGFEVILGTDVSYI-PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF--RQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~-~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.++||+|+++-++|. .+....+++.+.+.| +|+| .+++-... |..- -...+-..-.||++..++
T Consensus 193 l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~L-kPGG--------~Lvlr~~~G~r~~L-Yp~v~~~~~~gf~~~~~~ 259 (296)
T PLN03075 193 LKEYDVVFLAALVGMDKEEKVKVIEHLGKHM-APGA--------LLMLRSAHGARAFL-YPVVDPCDLRGFEVLSVF 259 (296)
T ss_pred cCCcCEEEEecccccccccHHHHHHHHHHhc-CCCc--------EEEEecccchHhhc-CCCCChhhCCCeEEEEEE
Confidence 358999999844554 489999999999999 9988 66665422 2110 001122223499988876
No 264
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.81 E-value=1.3e-07 Score=93.05 Aligned_cols=145 Identities=18% Similarity=0.149 Sum_probs=88.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhc-CCCCCCCceEEEEe-ecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRL-EWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~i~~~~l-~w~~~~~~~~~~~~~~ 452 (564)
.+.+|||||||+|++..+++++ ...++++||+++.+++.+++|++.| ++. +++.+..- +-. +.+..+ ....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~---~~I~~~~~~~~~--~i~~~i-~~~~ 187 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN---GAIRLRLQKDSK--AIFKGI-IHKN 187 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc---CcEEEEEccchh--hhhhcc-cccC
Confidence 4579999999999787777664 4569999999999999999999999 664 45655421 110 011110 0135
Q ss_pred CCccEEEEeceeeCCCChH-----HHHHHHH----------------HHhhccCCCCC-----------CCCCcEEEEEE
Q 008457 453 EGFEVILGTDVSYIPEAIL-----PLFATAK----------------ELTASSNKSLR-----------EDQQPAFILCH 500 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~-----~l~~~~~----------------~ll~~~~g~~~-----------~~~~~~~~~~~ 500 (564)
++||+|+++...|...... .-.+.++ +++ .++|... -......+.+.
T Consensus 188 ~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~-~~GGe~~fi~~mi~eS~~~~~~~gwftsm 266 (321)
T PRK11727 188 ERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELW-CEGGEVAFIKRMIEESKAFAKQVLWFTSL 266 (321)
T ss_pred CceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhhee-eCCcEeeeehHhhHHHHHHHhhCcEEEEE
Confidence 6899999888777543221 1111121 222 2333100 00112334555
Q ss_pred eeccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 501 IFRQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 501 ~~r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..+......+.+.+++.|..-..+.+.
T Consensus 267 v~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 267 VSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred eeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 556666678888899999966666544
No 265
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.80 E-value=5.5e-08 Score=79.65 Aligned_cols=102 Identities=25% Similarity=0.386 Sum_probs=78.0
Q ss_pred eEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEE
Q 008457 379 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI 458 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~I 458 (564)
+|+|+|||+|.+...++.....+++++|.++.+++.++++...+.. ..+.+...++.+... ....+||+|
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~d~i 70 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA----DNVEVLKGDAEELPP------EADESFDVI 70 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc----cceEEEEcChhhhcc------ccCCceEEE
Confidence 5899999999877777665567999999999999988864443332 345666555543311 134689999
Q ss_pred EEeceeeC-CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 008457 459 LGTDVSYI-PEAILPLFATAKELTASSNKSLREDQQPAFILC 499 (564)
Q Consensus 459 i~~d~~y~-~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~ 499 (564)
+++.+++. ......+++.+.+++ +++| .+++.
T Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~l-~~~g--------~~~~~ 103 (107)
T cd02440 71 ISDPPLHHLVEDLARFLEEARRLL-KPGG--------VLVLT 103 (107)
T ss_pred EEccceeehhhHHHHHHHHHHHHc-CCCC--------EEEEE
Confidence 99999888 889999999999999 9987 77665
No 266
>PRK03612 spermidine synthase; Provisional
Probab=98.79 E-value=7.7e-08 Score=102.40 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=80.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCC-cEEEEEeCChHHHHHHHhcc--cc------cCCCeeEEEecCCcccccCCCCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHK--DF------TETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~~iD~s~~~l~~a~~~~--~~------~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
+++.+|||||||+|..+..++++ ++ .+++++|+++++++.++++. .. ...+++++.+|....-. -..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~---~~~ 371 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR---KLA 371 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH---hCC
Confidence 56789999999999999998875 44 79999999999999999842 11 23578899999864211 134
Q ss_pred CceeEEEEcccccCCCh---hHHHHHHHHHHhccCCCeEEEEEe
Q 008457 145 SSIDIVTMVFVLSAVSP---EKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~---~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++||+|++.......+. --...+++.+++.|||||.+++..
T Consensus 372 ~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 372 EKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 68999999754332210 112468999999999999998853
No 267
>PRK06922 hypothetical protein; Provisional
Probab=98.79 E-value=3.1e-08 Score=104.39 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=76.3
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
..++.+|||+|||+|.++..++... ..+|+++|+|+.|++.++++...++. ++.+...|-.+. . ..+++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-----~ie~I~gDa~dL---p--~~fed 485 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-----SWNVIKGDAINL---S--SSFEK 485 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-----CeEEEEcchHhC---c--cccCC
Confidence 3467899999999997766666543 56999999999999999988765432 233332222111 0 01356
Q ss_pred CCccEEEEeceeeC-------------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 453 EGFEVILGTDVSYI-------------PEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~-------------~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
++||+|+++-++.+ ......+++.+.++| +|+| .+++..
T Consensus 486 eSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVL-KPGG--------rLII~D 537 (677)
T PRK06922 486 ESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVL-KPGG--------RIIIRD 537 (677)
T ss_pred CCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHc-CCCc--------EEEEEe
Confidence 78999998765532 246788999999999 9988 777764
No 268
>PHA03412 putative methyltransferase; Provisional
Probab=98.78 E-value=1.3e-07 Score=87.75 Aligned_cols=98 Identities=9% Similarity=0.133 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhC---CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAY---PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~---~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
..+.+|||+|||+|.++..++++. +..+|+++|+++.+++.|++... ++.+...|+.... .+++||+|
T Consensus 48 ~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----~~~~~~~D~~~~~-----~~~~FDlI 118 (241)
T PHA03412 48 CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----EATWINADALTTE-----FDTLFDMA 118 (241)
T ss_pred cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----CCEEEEcchhccc-----ccCCccEE
Confidence 347899999999999999888763 35689999999999999997753 4788888886432 24689999
Q ss_pred EEcccccCCC----------hhHHHHHHHHHHhccCCCeE
Q 008457 151 TMVFVLSAVS----------PEKMSLVLQNIKKVLKPTGY 180 (564)
Q Consensus 151 ~~~~vl~~~~----------~~~~~~~l~~~~r~LkpgG~ 180 (564)
++|=-+.-.. ..-...++..+.+++++|+.
T Consensus 119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9965433211 12355688899997777775
No 269
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.78 E-value=1.2e-07 Score=87.85 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=89.1
Q ss_pred eechhHHHHHHHHhc---CCCCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCce
Q 008457 356 MLWESAHLMAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKL 431 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~---~~~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i 431 (564)
+-|+.... .+++.. +...+.+..+||+|||+|++++.+++. ....|+|+|.++.++.++.+|+..+.+. +++
T Consensus 126 PRpETEE~-V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~---g~i 201 (328)
T KOG2904|consen 126 PRPETEEW-VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS---GRI 201 (328)
T ss_pred cCccHHHH-HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc---Cce
Confidence 44554443 344332 334456678999999999999877775 4569999999999999999999999986 777
Q ss_pred EEEEe----ecCCCccchhhhhhcCCCccEEEEeceeeCCC--------------------------ChHHHHHHHHHHh
Q 008457 432 ITKRL----EWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--------------------------AILPLFATAKELT 481 (564)
Q Consensus 432 ~~~~l----~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~l~~~~~~ll 481 (564)
.+.++ +|.... ++..++.|+|+++...-... .+-.+..-..+.|
T Consensus 202 ~v~~~~me~d~~~~~------~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~L 275 (328)
T KOG2904|consen 202 EVIHNIMESDASDEH------PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRML 275 (328)
T ss_pred EEEeccccccccccc------ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhc
Confidence 77755 343321 23457999999775422221 2344555666777
Q ss_pred hccCCCCCCCCCcEEEEEEeeccCC
Q 008457 482 ASSNKSLREDQQPAFILCHIFRQVD 506 (564)
Q Consensus 482 ~~~~g~~~~~~~~~~~~~~~~r~~~ 506 (564)
+++| .+.+....+..+
T Consensus 276 -q~gg--------~~~le~~~~~~~ 291 (328)
T KOG2904|consen 276 -QPGG--------FEQLELVERKEH 291 (328)
T ss_pred -ccCC--------eEEEEecccccC
Confidence 7766 666666655444
No 270
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.78 E-value=4.7e-08 Score=90.14 Aligned_cols=112 Identities=18% Similarity=0.231 Sum_probs=87.3
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEE-ecCCcccccCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFV-CDLISDDLSRQIS 143 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~-~d~~~~~~~~~~~ 143 (564)
.-++...++++|||||++.|.-+.+++...| +.+++.+|+++++.+.|++.+...+ .++.... +|.... +. ...
T Consensus 52 ~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~-l~-~~~ 129 (219)
T COG4122 52 RLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV-LS-RLL 129 (219)
T ss_pred HHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-HH-hcc
Confidence 3344457899999999999999999999977 7899999999999999999887654 3466666 355322 11 245
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
.++||+|+.-.. +.+...++..+.++|+|||.+++-..
T Consensus 130 ~~~fDliFIDad-----K~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 130 DGSFDLVFIDAD-----KADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred CCCccEEEEeCC-----hhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 689999998432 34567899999999999999998543
No 271
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.77 E-value=3.2e-08 Score=88.27 Aligned_cols=103 Identities=20% Similarity=0.240 Sum_probs=76.2
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
...|.+||||-||+|+++..++++++.+|+++|.|..++..+++|++.-+.. ....+...| ....+......
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~---~~~~~~~~d-----a~~~L~~~~~~ 112 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE---GEARVLRND-----ALRALKQLGTR 112 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc---cceEEEeec-----HHHHHHhcCCC
Confidence 3689999999999999999999999999999999999999999999887654 233333222 11222222222
Q ss_pred -CccEEEEeceeeCCCChHHHHHHHH----HHhhccCC
Q 008457 454 -GFEVILGTDVSYIPEAILPLFATAK----ELTASSNK 486 (564)
Q Consensus 454 -~fD~Ii~~d~~y~~~~~~~l~~~~~----~ll~~~~g 486 (564)
.||+|. .|..|.....+..+..+. .+| ++++
T Consensus 113 ~~FDlVf-lDPPy~~~l~~~~~~~~~~~~~~~L-~~~~ 148 (187)
T COG0742 113 EPFDLVF-LDPPYAKGLLDKELALLLLEENGWL-KPGA 148 (187)
T ss_pred CcccEEE-eCCCCccchhhHHHHHHHHHhcCCc-CCCc
Confidence 499876 799999877765555555 567 7765
No 272
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.76 E-value=6.3e-08 Score=92.56 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCccccHHHH----HHhCC-----CcEEEEEeCChHHHHHHHhccc-------------------cc----
Q 008457 75 GRKDVLEVGCGAGNTIFPL----IAAYP-----DVFVYACDFSPRAVNLVMTHKD-------------------FT---- 122 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l----~~~~~-----~~~v~~iD~s~~~l~~a~~~~~-------------------~~---- 122 (564)
...+|+.+||++|.-...+ .+..+ .++|+|+|+|..+++.|+.-.- ..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4889999999999655444 34443 5899999999999999986210 00
Q ss_pred -------CCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 123 -------ETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 123 -------~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
...|.|...|+..+.. ..+.||+|+|.+||.++..+...+++..++..|+|||+|++.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~----~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP----FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc----ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 0246677777755431 457799999999999999889999999999999999999984
No 273
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.75 E-value=8e-08 Score=90.10 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=89.5
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHH-HHHHHHhcCCCCCCCceEEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDL-LAQNVTANLKPPFLAKLITK 434 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~-~~~n~~~n~~~~~~~~i~~~ 434 (564)
.++.++..|...+......+++++|||+|||||+++..++..++.+|+++|.++.++.. +++|...-.. +...+.
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~----~~~ni~ 130 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVL----ERTNIR 130 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEe----ecCCcc
Confidence 55678888888888776567899999999999999999988888899999999976654 4443211000 111222
Q ss_pred EeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee------------
Q 008457 435 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF------------ 502 (564)
Q Consensus 435 ~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~------------ 502 (564)
.++|.+. ..|++ .+|+.+.. +..++..+..+| ++ | .+++-.++
T Consensus 131 ~~~~~~~------------~~d~~-~~DvsfiS--~~~~l~~i~~~l-~~-~--------~~~~L~KPqFE~~~~~~~~~ 185 (228)
T TIGR00478 131 YVTPADI------------FPDFA-TFDVSFIS--LISILPELDLLL-NP-N--------DLTLLFKPQFEAGREKKNKK 185 (228)
T ss_pred cCCHhHc------------CCCce-eeeEEEee--hHhHHHHHHHHh-Cc-C--------eEEEEcChHhhhcHhhcCcC
Confidence 4445432 12433 34544433 233588888888 77 5 22222222
Q ss_pred --------ccCChhHHHHHHHHcCCeEEEEcC
Q 008457 503 --------RQVDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 503 --------r~~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
+......+...+.+.||.+..+..
T Consensus 186 giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 186 GVVRDKEAIALALHKVIDKGESPDFQEKKIIF 217 (228)
T ss_pred CeecCHHHHHHHHHHHHHHHHcCCCeEeeEEE
Confidence 111123566677788999988763
No 274
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.74 E-value=7.6e-08 Score=91.21 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=106.3
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchh
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA 446 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~ 446 (564)
-++.+...+.++.|||+|||+|.++..++..++++|.+++-+ +|.+.+++-++.|++. ++|.+..-...+.
T Consensus 168 Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~---~rItVI~GKiEdi----- 238 (517)
T KOG1500|consen 168 AILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLA---DRITVIPGKIEDI----- 238 (517)
T ss_pred HHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCcc---ceEEEccCccccc-----
Confidence 345566778999999999999988888888899999999995 7999999999999775 6677665444332
Q ss_pred hhhhcCCCccEEEEec---eeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----cCChhHHHHHHHHcCC
Q 008457 447 IKEENNEGFEVILGTD---VSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR----QVDEPSMLSAATQCGF 519 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d---~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r----~~~~~~~~~~~~~~g~ 519 (564)
+ .+++.|+||+-. ++++...++..+..- +.| +|+| ..+-+...- --++..+.+...++.|
T Consensus 239 --e-LPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l-~P~G--------kMfPT~gdiHlAPFsDE~Ly~E~~nkAnF 305 (517)
T KOG1500|consen 239 --E-LPEKVDVIISEPMGYMLVNERMLESYLHAR-KWL-KPNG--------KMFPTVGDIHLAPFSDEQLYVEQFNKANF 305 (517)
T ss_pred --c-CchhccEEEeccchhhhhhHHHHHHHHHHH-hhc-CCCC--------cccCcccceeecccchHHHHHHHHhhhhh
Confidence 1 246899999654 467777777777554 899 9988 333222211 1123345677777777
Q ss_pred eEEEEcCCCCCCCCccccccccccCCCCcccCCCC
Q 008457 520 RLVDKWPSKNSASPSESIISSWFSENGHEVYLPSP 554 (564)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (564)
+....+- ..-..=+-...+++.||-|
T Consensus 306 WyQq~fy---------GVdLt~L~g~a~~eYFrQP 331 (517)
T KOG1500|consen 306 WYQQNFY---------GVDLTPLYGSAHQEYFRQP 331 (517)
T ss_pred hhhhccc---------cccchhhhhhhhhhhhccc
Confidence 7766541 1101112256677777765
No 275
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.74 E-value=8.4e-08 Score=98.00 Aligned_cols=123 Identities=12% Similarity=0.074 Sum_probs=85.0
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
.+.+|||||||+|.++..++.. +.+|+++|+++.+++.+++|+..|+. .++.+...|..+. +.. ...+|
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~----~~~~~~~~d~~~~-----~~~-~~~~~ 301 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGL----DNLSFAALDSAKF-----ATA-QMSAP 301 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCC----CcEEEEECCHHHH-----HHh-cCCCC
Confidence 5679999999999888777765 47899999999999999999999886 2466655443211 111 12369
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
|+|+. |..|. .....+++.+.. + +|++ .+|++........ + +..+ .|++++++-
T Consensus 302 D~vi~-DPPr~-G~~~~~l~~l~~-~-~p~~--------ivyvsc~p~TlaR-D-l~~L--~gy~l~~~~ 355 (374)
T TIGR02085 302 ELVLV-NPPRR-GIGKELCDYLSQ-M-APKF--------ILYSSCNAQTMAK-D-IAEL--SGYQIERVQ 355 (374)
T ss_pred CEEEE-CCCCC-CCcHHHHHHHHh-c-CCCe--------EEEEEeCHHHHHH-H-HHHh--cCceEEEEE
Confidence 98775 66664 456677777754 4 5655 8888866554332 2 2233 589999875
No 276
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.74 E-value=9e-08 Score=90.75 Aligned_cols=149 Identities=19% Similarity=0.340 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-----------------------------CC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----------------------------ET 124 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-----------------------------~~ 124 (564)
.++.++||||||.-..-..-+... --+++..|+++..++..++..... ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 457899999999854422112111 246999999999887665422110 01
Q ss_pred Ce-eEEEecCCcccccCC-C-CCCceeEEEEcccccCCC--hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccc
Q 008457 125 RV-STFVCDLISDDLSRQ-I-SPSSIDIVTMVFVLSAVS--PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGK 199 (564)
Q Consensus 125 ~i-~~~~~d~~~~~~~~~-~-~~~~fD~V~~~~vl~~~~--~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~ 199 (564)
.| +++.+|+.+...-.+ . ...+||+|++.++|+... .+....+++++.++|||||.|++......
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~---------- 203 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS---------- 203 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-----------
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc----------
Confidence 23 366788876543212 0 123599999999999764 57788999999999999999998754321
Q ss_pred ccccccceeecCCC-ceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 200 DQKISENFYVRGDG-TRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 200 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
.+|..+.. .....++.+.+++.++++||.++...
T Consensus 204 ------t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 204 ------TYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ------SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ------eeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 22333222 23346799999999999999998776
No 277
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.74 E-value=1.3e-07 Score=81.08 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=104.5
Q ss_pred ccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCc
Q 008457 57 FKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS 135 (564)
Q Consensus 57 ~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~ 135 (564)
..+..++.+.....+....+..|||+|.|||-++..++++ .+...+++++.|++.....+++.. .+.++.+|+..
T Consensus 30 ~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----~~~ii~gda~~ 105 (194)
T COG3963 30 LPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----GVNIINGDAFD 105 (194)
T ss_pred cCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC----Cccccccchhh
Confidence 3456677788888888889999999999999999999888 345679999999999999988764 34577788765
Q ss_pred ccc-cCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 136 DDL-SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 136 ~~~-~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.+. ...+++..||.|+|.--+-.+|.....+.|+++...|.+||.++-..++
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 541 1134677899999999888898888899999999999999999887665
No 278
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.74 E-value=2.8e-08 Score=96.42 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=75.4
Q ss_pred CCCeEEEeCCcccH----HHHHHHhcC------CCEEEEEcCChhHHHHHHHHHHh----cCCCC---------------
Q 008457 376 AGKKVLELGCGCGG----ICSMVAAGS------ADLVVATDGDSIALDLLAQNVTA----NLKPP--------------- 426 (564)
Q Consensus 376 ~~~~vLelG~G~G~----l~~~~~~~~------~~~v~~tD~~~~~l~~~~~n~~~----n~~~~--------------- 426 (564)
++.+|+|+|||||- ++..++... ..+|++||+|+.|++.+++++-. .+.+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999994 344444332 34899999999999999976421 11110
Q ss_pred ----CCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 427 ----FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 427 ----~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
....+.+...|..+. +.+.++||+|++..++.+. .....+++.+.++| +|+| .+++.+
T Consensus 179 v~~~ir~~V~F~~~dl~~~-------~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L-~pGG--------~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAE-------SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEAL-KPGG--------YLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCC-------CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHh-CCCe--------EEEEEC
Confidence 012345554444332 1235789999999887654 45668999999999 9998 777764
Q ss_pred ee
Q 008457 501 IF 502 (564)
Q Consensus 501 ~~ 502 (564)
..
T Consensus 243 ~E 244 (264)
T smart00138 243 SE 244 (264)
T ss_pred cc
Confidence 44
No 279
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.73 E-value=7.1e-08 Score=98.51 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=78.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC---CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||+|||+|.++...+.. ...+|+++|+|+.+++.|+++....+ .+++++++|+........-..++||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 46789999999999998776554 24589999999999999999876543 368899999864211001124589999
Q ss_pred EEcccccCCCh-------hHHHHHHHHHHhccCCCeEEEEEe
Q 008457 151 TMVFVLSAVSP-------EKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 151 ~~~~vl~~~~~-------~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++.--...-+. .....++..+.++|+|||.++...
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99633211111 234556667889999999998753
No 280
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.72 E-value=5.6e-08 Score=107.20 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=96.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC---CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|+++....+ .+++++++|+.+..- . ..++||+|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~--~-~~~~fDlI 612 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLK--E-AREQFDLI 612 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHH--H-cCCCcCEE
Confidence 357899999999999999998862 3479999999999999999876443 368999999854211 1 14689999
Q ss_pred EEccc-cc------CC--ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCH
Q 008457 151 TMVFV-LS------AV--SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSN 221 (564)
Q Consensus 151 ~~~~v-l~------~~--~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (564)
++.-- +. .. ...+...++..+.++|+|||.+++..-.. .++.
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~-----------------------------~~~~ 663 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR-----------------------------GFKM 663 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-----------------------------cCCh
Confidence 99421 10 00 12356678889999999999998753211 0111
Q ss_pred HHHHHHHHhCCCcEEEeeeeec
Q 008457 222 DFLTSLFKENGFDVEELGLCCK 243 (564)
Q Consensus 222 ~~l~~~l~~aGf~~~~~~~~~~ 243 (564)
..+.+.++|+.+..+.....
T Consensus 664 --~~~~~~~~g~~~~~i~~~~~ 683 (702)
T PRK11783 664 --DEEGLAKLGLKAEEITAKTL 683 (702)
T ss_pred --hHHHHHhCCCeEEEEecCCC
Confidence 15778889998887765443
No 281
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.71 E-value=1.7e-07 Score=93.65 Aligned_cols=123 Identities=12% Similarity=0.068 Sum_probs=80.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++|+..|++ .++++...|..+. .....+.|
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l----~~v~~~~~D~~~~------~~~~~~~~ 241 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL----TNVQFQALDSTQF------ATAQGEVP 241 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC----CceEEEEcCHHHH------HHhcCCCC
Confidence 56899999999998887777654 7999999999999999999999886 3466655443211 11123479
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
|+|+.. ..+. .....+++.+.. + ++ ...+|++........ + +..+ .|+++.++-
T Consensus 242 D~Vv~d-PPr~-G~~~~~~~~l~~-~-~~--------~~ivyvsc~p~t~~r-d-~~~l--~~y~~~~~~ 295 (315)
T PRK03522 242 DLVLVN-PPRR-GIGKELCDYLSQ-M-AP--------RFILYSSCNAQTMAK-D-LAHL--PGYRIERVQ 295 (315)
T ss_pred eEEEEC-CCCC-CccHHHHHHHHH-c-CC--------CeEEEEECCcccchh-H-Hhhc--cCcEEEEEE
Confidence 998854 3332 233444444433 2 33 337777766655432 2 2333 589888875
No 282
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.70 E-value=4.8e-07 Score=83.17 Aligned_cols=134 Identities=19% Similarity=0.191 Sum_probs=92.5
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhc-C------CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccch
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAG-S------ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE 445 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~-~------~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~ 445 (564)
....+.+|||++||||-++..++.. . ..+|+..|+||+++...++....-.+... . .+.|...+ .+
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~-~-----~~~w~~~d-AE 169 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKAS-S-----RVEWVEGD-AE 169 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcC-C-----ceEEEeCC-cc
Confidence 4457799999999999666555542 2 26899999999999999988766444311 1 23343321 22
Q ss_pred hhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEE
Q 008457 446 AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 446 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
.+ ++++..||....+=-|-+..+++..+++..|+| ||+| +|+ |..........+.....++-|.|..+
T Consensus 170 ~L-pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVL-KpGG--------rf~-cLeFskv~~~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 170 DL-PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVL-KPGG--------RFS-CLEFSKVENEPLKWFYDQYSFDVLPV 237 (296)
T ss_pred cC-CCCCCcceeEEEecceecCCCHHHHHHHHHHhc-CCCc--------EEE-EEEccccccHHHHHHHHhhhhhhhch
Confidence 22 477889999999988999999999999999999 9988 655 44443333223333334556666544
No 283
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.70 E-value=5.4e-08 Score=89.96 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccc--ccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDD--LSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~~~~fD 148 (564)
.+..+||||||++|.-+..+++..| +++|+.+|++++..+.|++.+...+ .+|+++.+|....- +....+.++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 5788999999999999999998765 6899999999999999998776443 68999999875321 11011246899
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|+.-.- ..+...++..+.++|+|||.+++-.
T Consensus 124 ~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 124 FVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEEccc-----ccchhhHHHHHhhhccCCeEEEEcc
Confidence 9999553 3466778899999999999999854
No 284
>PRK04457 spermidine synthase; Provisional
Probab=98.70 E-value=6.1e-07 Score=86.87 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=82.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
+.++|||||||+|.++..++... ..+|+++|+++++++.+++++..+... .++++..-|.. +.+. ....+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~---~rv~v~~~Da~-----~~l~-~~~~~ 136 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG---ERFEVIEADGA-----EYIA-VHRHS 136 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC---CceEEEECCHH-----HHHH-hCCCC
Confidence 46789999999998887776654 468999999999999999998654332 45655543321 1111 12458
Q ss_pred ccEEEEeceeeCCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHc
Q 008457 455 FEVILGTDVSYIPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC 517 (564)
Q Consensus 455 fD~Ii~~d~~y~~~------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 517 (564)
||+|+. |. |+.. ....+++.+.++| +|+| ++++....+......+++.+++.
T Consensus 137 yD~I~~-D~-~~~~~~~~~l~t~efl~~~~~~L-~pgG--------vlvin~~~~~~~~~~~l~~l~~~ 194 (262)
T PRK04457 137 TDVILV-DG-FDGEGIIDALCTQPFFDDCRNAL-SSDG--------IFVVNLWSRDKRYDRYLERLESS 194 (262)
T ss_pred CCEEEE-eC-CCCCCCccccCcHHHHHHHHHhc-CCCc--------EEEEEcCCCchhHHHHHHHHHHh
Confidence 999985 43 3322 2378999999999 9988 77765444433334566666543
No 285
>PLN02476 O-methyltransferase
Probab=98.69 E-value=1.7e-07 Score=90.18 Aligned_cols=110 Identities=11% Similarity=0.120 Sum_probs=85.3
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccc--ccCCCCCC
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDD--LSRQISPS 145 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~~~ 145 (564)
+...++.+|||||+|+|..+..++... ++.+|+++|.+++..+.|++.++..+ ++++++.+|+...- +...-..+
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 334678999999999999999999864 36789999999999999999876554 57999999875421 10011236
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+||+|+.-.- ......+++.+.++|+|||.+++-.
T Consensus 194 ~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 194 SYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred CCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 8999998442 3567789999999999999998853
No 286
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.69 E-value=2.5e-07 Score=91.57 Aligned_cols=105 Identities=17% Similarity=0.097 Sum_probs=70.9
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
+..++.+...+.++.+|||+|||+|.++..++.... .+|+++|.++++++.+++|+..++. .++.+..-|....
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~----~nV~~i~gD~~~~ 143 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI----ENVIFVCGDGYYG 143 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC----CcEEEEeCChhhc
Confidence 333444444555788999999999988877776543 3799999999999999999998775 2344443332111
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
. ....+||+|+.+-. ...+...+.+.| +++|
T Consensus 144 -----~--~~~~~fD~Ii~~~g------~~~ip~~~~~~L-kpgG 174 (322)
T PRK13943 144 -----V--PEFAPYDVIFVTVG------VDEVPETWFTQL-KEGG 174 (322)
T ss_pred -----c--cccCCccEEEECCc------hHHhHHHHHHhc-CCCC
Confidence 0 11247999986522 223345567789 8887
No 287
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.67 E-value=4.1e-07 Score=82.54 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=91.1
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEccc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFV 155 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~v 155 (564)
..++|||||=+...... ..+-..|+.||+++. .-.+.+.|+..-.++. -+.++||+|.+..|
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------------~~~I~qqDFm~rplp~-~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------------HPGILQQDFMERPLPK-NESEKFDVISLSLV 113 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------------CCCceeeccccCCCCC-CcccceeEEEEEEE
Confidence 47999999976554332 233567999999772 1235567775432221 24679999999999
Q ss_pred ccCCC-hhHHHHHHHHHHhccCCCeE-----EEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHH
Q 008457 156 LSAVS-PEKMSLVLQNIKKVLKPTGY-----VLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFK 229 (564)
Q Consensus 156 l~~~~-~~~~~~~l~~~~r~LkpgG~-----lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 229 (564)
|.++| +.....+++++.+.|+|+|. |++..+.+- -....|++.+.|..+++
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C-----------------------v~NSRy~~~~~l~~im~ 170 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC-----------------------VTNSRYMTEERLREIME 170 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH-----------------------hhcccccCHHHHHHHHH
Confidence 99998 67888999999999999999 777644321 12233678999999999
Q ss_pred hCCCcEEEeeee
Q 008457 230 ENGFDVEELGLC 241 (564)
Q Consensus 230 ~aGf~~~~~~~~ 241 (564)
..||..++....
T Consensus 171 ~LGf~~~~~~~~ 182 (219)
T PF11968_consen 171 SLGFTRVKYKKS 182 (219)
T ss_pred hCCcEEEEEEec
Confidence 999998876443
No 288
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.67 E-value=7.2e-09 Score=97.48 Aligned_cols=134 Identities=22% Similarity=0.241 Sum_probs=89.6
Q ss_pred CccceechhHHHHHHHHhcC---CCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHH-HHHHhcCCCC-
Q 008457 352 STGLMLWESAHLMAAVLARN---PTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLA-QNVTANLKPP- 426 (564)
Q Consensus 352 ~~G~~~W~~~~~l~~~l~~~---~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~-~n~~~n~~~~- 426 (564)
-.|+++|.++..|..++... .-.+.+++|||||||+|..++.+...+...|++.|+|.+.++... -|+..|....
T Consensus 89 EGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~ 168 (282)
T KOG2920|consen 89 EGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGV 168 (282)
T ss_pred ecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhh
Confidence 35899999999999999854 345689999999999994444455556689999999998884322 3333332211
Q ss_pred ----CCCceEEEEe---ecCCCccchhhhhhcCC--CccEEEEeceeeCCCChHHH-HHHHHHHhhccCCCCCCCCCcEE
Q 008457 427 ----FLAKLITKRL---EWGNRDHIEAIKEENNE--GFEVILGTDVSYIPEAILPL-FATAKELTASSNKSLREDQQPAF 496 (564)
Q Consensus 427 ----~~~~i~~~~l---~w~~~~~~~~~~~~~~~--~fD~Ii~~d~~y~~~~~~~l-~~~~~~ll~~~~g~~~~~~~~~~ 496 (564)
......+..- ||.. ...+ +||+|+++.++|.....+.+ ..+...++ ++.| ++
T Consensus 169 ~~~e~~~~~~i~~s~l~dg~~---------~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~-~~D~--------~~ 230 (282)
T KOG2920|consen 169 EEKENHKVDEILNSLLSDGVF---------NHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLL-KTDG--------VF 230 (282)
T ss_pred hhhhcccceeccccccccchh---------hhccccchhhhhhhhhhhCcchhhhhHhhhhhhcC-Cccc--------hh
Confidence 0001111111 4411 1123 89999999999999999888 66666666 7766 66
Q ss_pred EEEEeec
Q 008457 497 ILCHIFR 503 (564)
Q Consensus 497 ~~~~~~r 503 (564)
+++.+.-
T Consensus 231 ~~aAK~~ 237 (282)
T KOG2920|consen 231 YVAAKKL 237 (282)
T ss_pred hhhhHhh
Confidence 6665543
No 289
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.67 E-value=5.1e-08 Score=91.42 Aligned_cols=137 Identities=19% Similarity=0.289 Sum_probs=96.2
Q ss_pred HHhHhHHHHHHhhccccccccchhHHHHhhhcc-CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhc
Q 008457 40 EAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFS-GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH 118 (564)
Q Consensus 40 ~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~ 118 (564)
..++|-..+|......|-.+....-.....++. ...+..++|+|||.|..+. .+|.+.++|+|++...+..+++.
T Consensus 9 leqeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~ 84 (293)
T KOG1331|consen 9 LEQEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS 84 (293)
T ss_pred HHHHHhHHHHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC
Confidence 344454445544444443333321122223322 2458999999999997743 34788899999999999888765
Q ss_pred ccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCC-hhHHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 119 KDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 119 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
.. .....+|+.. .|+++.+||.+++..++||++ ......+++++.|.|+|||..++..+...
T Consensus 85 ~~-----~~~~~ad~l~----~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 85 GG-----DNVCRADALK----LPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred CC-----ceeehhhhhc----CCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 32 1344566643 377899999999999999997 56677899999999999999999877653
No 290
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.67 E-value=4.1e-08 Score=89.53 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=64.6
Q ss_pred eEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEE
Q 008457 379 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI 458 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~I 458 (564)
.++|+|||+| .+...++...++|++||.++.||+.+++.-...-.. -.... .++ +...|. -.++++|+|
T Consensus 36 ~a~DvG~G~G-qa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~---t~~~m-----s~~-~~v~L~-g~e~SVDlI 104 (261)
T KOG3010|consen 36 LAWDVGTGNG-QAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCH---TPSTM-----SSD-EMVDLL-GGEESVDLI 104 (261)
T ss_pred eEEEeccCCC-cchHHHHHhhhhheeecCCHHHHHHhhcCCCccccc---CCccc-----ccc-cccccc-CCCcceeee
Confidence 8999999999 666666666789999999999999887642221110 00111 111 111111 126799999
Q ss_pred EEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 459 LGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 459 i~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+++.|++. -+++.+.+.++++|+++||
T Consensus 105 ~~Aqa~HW-Fdle~fy~~~~rvLRk~Gg 131 (261)
T KOG3010|consen 105 TAAQAVHW-FDLERFYKEAYRVLRKDGG 131 (261)
T ss_pred hhhhhHHh-hchHHHHHHHHHHcCCCCC
Confidence 99998755 4589999999999944443
No 291
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.66 E-value=1.3e-07 Score=89.96 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=73.0
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh-h
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-E 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-~ 450 (564)
..+.++|||+|||+|..+..++.. ...+|+++|.++++++.+++|++.+++. +++++..-+..+. +..+.. .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~---~~i~~~~gda~~~--L~~l~~~~ 140 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD---HKINFIQSDALSA--LDQLLNND 140 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEccHHHH--HHHHHhCC
Confidence 346789999999999544433332 3569999999999999999999999875 5676665554321 111111 1
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..++||+|+. |.- ...+..++..+.++| +|+|
T Consensus 141 ~~~~fD~Vfi-Da~--k~~y~~~~~~~~~ll-~~GG 172 (234)
T PLN02781 141 PKPEFDFAFV-DAD--KPNYVHFHEQLLKLV-KVGG 172 (234)
T ss_pred CCCCCCEEEE-CCC--HHHHHHHHHHHHHhc-CCCe
Confidence 2458999874 432 356678889999999 9987
No 292
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.65 E-value=5.6e-08 Score=88.01 Aligned_cols=110 Identities=25% Similarity=0.323 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc----CCCeeEEEecCCcccccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
..+.+|||+|||+|..+..++...+..+|+..|.++ .++..+.+...+ ..++.+...|.........+...+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 678999999999999888888875678999999988 888887776543 366778777765422111224568999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
|++..+++.- +....+++-+.++|+|+|.+++...
T Consensus 123 IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999999875 6788899999999999998777643
No 293
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.65 E-value=1.4e-07 Score=98.80 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=77.4
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|+++....+ .+++++.+|+.......++.+++
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCC
Confidence 34444456789999999999999999987 4689999999999999998765433 57899999985421111223467
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
||+|++.--=.-+ ...+++.+.+ ++|++.++++
T Consensus 363 ~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 363 PDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEc
Confidence 9999973321111 2345555554 8899988775
No 294
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.65 E-value=1.1e-07 Score=86.01 Aligned_cols=141 Identities=15% Similarity=0.148 Sum_probs=101.2
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhCCCc-EEEEEeCChHHHHHHHhcccc---cCCCeeEEEecCCcccccCCCCCCc
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDV-FVYACDFSPRAVNLVMTHKDF---TETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~~iD~s~~~l~~a~~~~~~---~~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
..+..+.+|||...|-|..+...+++ |. +|+.++.++..++.|.-+.-. ...+++.+.+|..+ .-..|++++
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--~V~~~~D~s 205 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--VVKDFDDES 205 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH--HHhcCCccc
Confidence 34467999999999999999998888 55 999999999999999876421 12467888998743 334678999
Q ss_pred eeEEEEcc-cccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 147 IDIVTMVF-VLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 147 fD~V~~~~-vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
||+|+--- -|.+-..---..+.++++|+|||||.++-.+-++.... . +.. -...+.
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry----r---------------G~d----~~~gVa 262 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY----R---------------GLD----LPKGVA 262 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc----c---------------cCC----hhHHHH
Confidence 99998611 11111111345799999999999999987655543210 0 000 256778
Q ss_pred HHHHhCCCcEEEe
Q 008457 226 SLFKENGFDVEEL 238 (564)
Q Consensus 226 ~~l~~aGf~~~~~ 238 (564)
+.|+++||.+++.
T Consensus 263 ~RLr~vGF~~v~~ 275 (287)
T COG2521 263 ERLRRVGFEVVKK 275 (287)
T ss_pred HHHHhcCceeeee
Confidence 8999999997653
No 295
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.65 E-value=7e-07 Score=93.55 Aligned_cols=145 Identities=14% Similarity=0.050 Sum_probs=94.7
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
.+..|.+.+.......++.+|||||||+|.++..++. .+.+|+++|+++.+++.+++|+..|+. .++.+...|+.
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~-~~~~V~~vE~~~~av~~a~~n~~~~~~----~nv~~~~~d~~ 350 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAK-QAKSVVGIEVVPESVEKAQQNAELNGI----ANVEFLAGTLE 350 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHH-hCCEEEEEEcCHHHHHHHHHHHHHhCC----CceEEEeCCHH
Confidence 3444555555544444668999999999988777665 456899999999999999999999886 35666655542
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCC
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF 519 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~ 519 (564)
+. +..+ ...+.+||+|+. |..+. .....+++.+.+ + ++++ .+|++...... ..-+..+.+.|+
T Consensus 351 ~~--l~~~-~~~~~~~D~vi~-dPPr~-G~~~~~l~~l~~-l-~~~~--------ivyvsc~p~tl--ard~~~l~~~gy 413 (431)
T TIGR00479 351 TV--LPKQ-PWAGQIPDVLLL-DPPRK-GCAAEVLRTIIE-L-KPER--------IVYVSCNPATL--ARDLEFLCKEGY 413 (431)
T ss_pred HH--HHHH-HhcCCCCCEEEE-CcCCC-CCCHHHHHHHHh-c-CCCE--------EEEEcCCHHHH--HHHHHHHHHCCe
Confidence 21 1111 122457999874 55543 335667776665 5 5544 77776544332 233555667789
Q ss_pred eEEEEcC
Q 008457 520 RLVDKWP 526 (564)
Q Consensus 520 ~~~~~~~ 526 (564)
++..+..
T Consensus 414 ~~~~~~~ 420 (431)
T TIGR00479 414 GITWVQP 420 (431)
T ss_pred eEEEEEE
Confidence 8888753
No 296
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=3.5e-07 Score=95.37 Aligned_cols=130 Identities=17% Similarity=0.145 Sum_probs=84.2
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.++.+|||+|||+|+.+..++.... .+|+++|.++.+++.+++|+..++.. +.+...|..+. .. .....
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-----~~~~~~D~~~~---~~--~~~~~ 312 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-----ATVIVGDARDP---AQ--WWDGQ 312 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEcCcccc---hh--hcccC
Confidence 4788999999999998888887654 69999999999999999999988752 33433333211 00 12345
Q ss_pred CccEEEEeceeeC---------------CC-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE--eeccCChhH
Q 008457 454 GFEVILGTDVSYI---------------PE-------AILPLFATAKELTASSNKSLREDQQPAFILCH--IFRQVDEPS 509 (564)
Q Consensus 454 ~fD~Ii~~d~~y~---------------~~-------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~--~~r~~~~~~ 509 (564)
+||.|+..-.... .+ ....+++.+.++| +|+| .++.+. ..+.+.+..
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L-kpGG--------~lvystcs~~~~Ene~~ 383 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL-KPGG--------TLLYATCSILPEENEQQ 383 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc-CCCC--------EEEEEeCCCChhhCHHH
Confidence 7999984322111 01 1236889999999 9988 555443 334444433
Q ss_pred HHHHHHHc-CCeEEE
Q 008457 510 MLSAATQC-GFRLVD 523 (564)
Q Consensus 510 ~~~~~~~~-g~~~~~ 523 (564)
+...+++. +|++..
T Consensus 384 v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 384 IKAFLARHPDAELLD 398 (427)
T ss_pred HHHHHHhCCCCEEec
Confidence 34444443 676554
No 297
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.64 E-value=1e-07 Score=95.19 Aligned_cols=102 Identities=12% Similarity=0.033 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++....+ .+++|+++|+..... . ..+.||+|++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~--~-~~~~~D~Vv~ 246 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT--A-QGEVPDLVLV 246 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH--h-cCCCCeEEEE
Confidence 45789999999999999999986 6799999999999999998865443 468999999854321 1 2357999998
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.-- .......+.++...++|++.++++.
T Consensus 247 dPP-----r~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 247 NPP-----RRGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CCC-----CCCccHHHHHHHHHcCCCeEEEEEC
Confidence 622 2222223333344478888888763
No 298
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.64 E-value=4.2e-07 Score=81.61 Aligned_cols=120 Identities=15% Similarity=0.205 Sum_probs=80.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
...-|||||||+| +++..+...+...+++|+|+.|++.+.+. +..+ ....-|-+.. .++.++.|
T Consensus 50 ~~~~iLDIGCGsG-LSg~vL~~~Gh~wiGvDiSpsML~~a~~~-e~eg--------dlil~DMG~G------lpfrpGtF 113 (270)
T KOG1541|consen 50 KSGLILDIGCGSG-LSGSVLSDSGHQWIGVDISPSMLEQAVER-ELEG--------DLILCDMGEG------LPFRPGTF 113 (270)
T ss_pred CCcEEEEeccCCC-cchheeccCCceEEeecCCHHHHHHHHHh-hhhc--------CeeeeecCCC------CCCCCCcc
Confidence 5778999999999 77666665568899999999999998862 2211 1122233322 25678999
Q ss_pred cEEEEecee---eC------C--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh-hHHHHHHHHcCCe
Q 008457 456 EVILGTDVS---YI------P--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-PSMLSAATQCGFR 520 (564)
Q Consensus 456 D~Ii~~d~~---y~------~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~g~~ 520 (564)
|-+|+--.+ .| . .-+-.++.++..+| +.++ ++++.++..+... +.+.+.+.++||.
T Consensus 114 Dg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l-~rg~--------raV~QfYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 114 DGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCL-KRGA--------RAVLQFYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred ceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhh-ccCc--------eeEEEecccchHHHHHHHHHHHhhccC
Confidence 988754322 22 1 12344688899999 8765 7777777776654 5566777777764
No 299
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.64 E-value=5.3e-07 Score=94.50 Aligned_cols=114 Identities=19% Similarity=0.150 Sum_probs=78.2
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 433 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~ 433 (564)
.+++.+..++..++. ..++.+|||+|||+|+.+..++.. ...+|+++|+++.+++.+++|+..++. ..+.+
T Consensus 233 ~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~----~~v~~ 305 (445)
T PRK14904 233 SVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI----TIIET 305 (445)
T ss_pred EEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC----CeEEE
Confidence 556544444444443 347789999999999888776653 245899999999999999999998776 34566
Q ss_pred EEeecCCCccchhhhhhcCCCccEEEEeceeeCC----------------C-------ChHHHHHHHHHHhhccCC
Q 008457 434 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP----------------E-------AILPLFATAKELTASSNK 486 (564)
Q Consensus 434 ~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~----------------~-------~~~~l~~~~~~ll~~~~g 486 (564)
...|..+. .+..+||+|+. |+.+.. + ....++..+.++| +|+|
T Consensus 306 ~~~Da~~~--------~~~~~fD~Vl~-D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l-kpgG 371 (445)
T PRK14904 306 IEGDARSF--------SPEEQPDAILL-DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLL-KPGG 371 (445)
T ss_pred EeCccccc--------ccCCCCCEEEE-cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 55444321 12457999983 332211 1 1235899999999 9988
No 300
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.64 E-value=4.1e-07 Score=95.49 Aligned_cols=141 Identities=22% Similarity=0.216 Sum_probs=90.8
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
+..++.++. ..++.+|||+|||+|+.+..++... ..+|+++|+++.+++.+++|+..++.. .+.+...|.
T Consensus 239 s~lv~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~----~v~~~~~D~ 310 (444)
T PRK14902 239 SMLVAPALD----PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT----NIETKALDA 310 (444)
T ss_pred HHHHHHHhC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEeCCc
Confidence 444555442 2367899999999998888877653 569999999999999999999998763 366665555
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCC----------------CC-------hHHHHHHHHHHhhccCCCCCCCCCcE
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIP----------------EA-------ILPLFATAKELTASSNKSLREDQQPA 495 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~----------------~~-------~~~l~~~~~~ll~~~~g~~~~~~~~~ 495 (564)
.+.. . .+. ++||+|++ |..+.. .. ...+++.+.++| +|+| .
T Consensus 311 ~~~~--~---~~~-~~fD~Vl~-D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~L-kpGG--------~ 374 (444)
T PRK14902 311 RKVH--E---KFA-EKFDKILV-DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYL-KKGG--------I 374 (444)
T ss_pred cccc--c---hhc-ccCCEEEE-cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHc-CCCC--------E
Confidence 4321 0 112 58999984 332211 01 135788899999 9988 5
Q ss_pred EEEEEee--ccCChhHHHHHHHHc-CCeEEEEc
Q 008457 496 FILCHIF--RQVDEPSMLSAATQC-GFRLVDKW 525 (564)
Q Consensus 496 ~~~~~~~--r~~~~~~~~~~~~~~-g~~~~~~~ 525 (564)
++.+... ..+.+..+...+++. +|+++.+.
T Consensus 375 lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~ 407 (444)
T PRK14902 375 LVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQ 407 (444)
T ss_pred EEEEcCCCChhhhHHHHHHHHHhCCCcEEeccc
Confidence 5543322 223333333444444 47776654
No 301
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.63 E-value=3.8e-07 Score=88.68 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=70.2
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.++.+|||+|||+|+.+..++... ...|+++|+++.+++.+++|+..++. .++.+...|.... ....
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~----~~v~~~~~D~~~~-------~~~~ 138 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV----LNVAVTNFDGRVF-------GAAV 138 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC----CcEEEecCCHHHh-------hhhc
Confidence 377899999999999888877653 35899999999999999999999876 2455554443211 1123
Q ss_pred CCccEEEEeceeeCC---------------C-------ChHHHHHHHHHHhhccCC
Q 008457 453 EGFEVILGTDVSYIP---------------E-------AILPLFATAKELTASSNK 486 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~---------------~-------~~~~l~~~~~~ll~~~~g 486 (564)
+.||+|+.--..... + ....+++.+.++| +|+|
T Consensus 139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l-kpgG 193 (264)
T TIGR00446 139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDAL-KPGG 193 (264)
T ss_pred cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhc-CCCC
Confidence 469999842211111 1 1235888888899 9987
No 302
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=6.1e-07 Score=78.14 Aligned_cols=132 Identities=18% Similarity=0.317 Sum_probs=97.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
....-+||||||+|..+..|++. .|+..+.++|++|.+++..++....+..+++.++.|+.. .+..++.|+++.
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-----~l~~~~VDvLvf 116 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-----GLRNESVDVLVF 116 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-----hhccCCccEEEE
Confidence 45788999999999999999877 567789999999999988777665555678888888754 334588998888
Q ss_pred cccccCC-------------------ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCC
Q 008457 153 VFVLSAV-------------------SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDG 213 (564)
Q Consensus 153 ~~vl~~~-------------------~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (564)
+--.--- .++-..+++.++-.+|.|.|.+++.....+
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N------------------------ 172 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN------------------------ 172 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc------------------------
Confidence 5321111 123356788888899999999998643221
Q ss_pred ceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 214 TRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 214 ~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
.++++.++++.-||.......
T Consensus 173 ------~p~ei~k~l~~~g~~~~~~~~ 193 (209)
T KOG3191|consen 173 ------KPKEILKILEKKGYGVRIAMQ 193 (209)
T ss_pred ------CHHHHHHHHhhcccceeEEEE
Confidence 367888899999998765433
No 303
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.63 E-value=2.8e-07 Score=90.22 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=69.0
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC----CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS----ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~----~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
+++.+..... ..+.+|||+|||+|.++..++... ...|+++|+|+.+++.++++. ..+.+...|..
T Consensus 74 i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~ 143 (272)
T PRK11088 74 VANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSH 143 (272)
T ss_pred HHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecc
Confidence 4444443321 245689999999997777666542 237999999999999987752 12333333322
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
+. ++.+++||+|++. +. +..++.+.++| +|+| .+++..+
T Consensus 144 ~l-------p~~~~sfD~I~~~---~~----~~~~~e~~rvL-kpgG--------~li~~~p 182 (272)
T PRK11088 144 RL-------PFADQSLDAIIRI---YA----PCKAEELARVV-KPGG--------IVITVTP 182 (272)
T ss_pred cC-------CCcCCceeEEEEe---cC----CCCHHHHHhhc-cCCC--------EEEEEeC
Confidence 11 3456799999964 33 23467899999 9988 7766644
No 304
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.62 E-value=3.1e-06 Score=83.46 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=101.3
Q ss_pred CCCCCCChhHHHHHHHHHhHhHHHHHHhhccccccccch---hH---HHHhhhccCCCCCeEEEEcCCccccHHHHHHhC
Q 008457 24 TPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHY---LD---KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY 97 (564)
Q Consensus 24 ~~~~~~~~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~---~~---~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~ 97 (564)
...+.++..+ .|+..-.+.|+..-.. ..+|..+.. +. ..+...+ .++..|+|+|||+|.-+..|++..
T Consensus 25 ~~~k~lp~k~--~YD~~Gs~LFe~It~l--pEYYptr~E~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL 98 (319)
T TIGR03439 25 GQPRTLPTLL--LYDDEGLKLFEEITYS--PEYYLTNDEIEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEAL 98 (319)
T ss_pred CCCCCCChHh--hhcchHHHHHHHHHcC--CccCChHHHHHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHH
Confidence 4455666666 6777666666653211 222222221 11 1222222 456789999999999988877653
Q ss_pred ----CCcEEEEEeCChHHHHHHHhccc-ccCCCee--EEEecCCcccc--cCCCCCCceeEEEE-cccccCCChhHHHHH
Q 008457 98 ----PDVFVYACDFSPRAVNLVMTHKD-FTETRVS--TFVCDLISDDL--SRQISPSSIDIVTM-VFVLSAVSPEKMSLV 167 (564)
Q Consensus 98 ----~~~~v~~iD~s~~~l~~a~~~~~-~~~~~i~--~~~~d~~~~~~--~~~~~~~~fD~V~~-~~vl~~~~~~~~~~~ 167 (564)
...+++++|+|.++++.+.++.. ..-..+. -+++|+.+.-. +.+.......+++. ...+.++++.+...+
T Consensus 99 ~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~f 178 (319)
T TIGR03439 99 ERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAF 178 (319)
T ss_pred HhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHH
Confidence 35789999999999999988876 3334444 47788754311 11111233456666 458999998999999
Q ss_pred HHHHHh-ccCCCeEEEEE
Q 008457 168 LQNIKK-VLKPTGYVLFR 184 (564)
Q Consensus 168 l~~~~r-~LkpgG~lii~ 184 (564)
|+++.+ .|+|||.|++.
T Consensus 179 L~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 179 LAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHHHHHhhCCCCCEEEEe
Confidence 999999 99999999884
No 305
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.61 E-value=2.3e-07 Score=83.98 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=61.5
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchh
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA 446 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~ 446 (564)
.+.......++.+|||||||+|.++..++.. +.+|+++|+++.+++.+++|+..+ .++++..-|..+.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~------~~v~ii~~D~~~~----- 71 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA------DNLTVIHGDALKF----- 71 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC------CCEEEEECchhcC-----
Confidence 3444444557789999999999998888877 578999999999999999997531 3455555544332
Q ss_pred hhhhcCCCccEEEEeceeeCC
Q 008457 447 IKEENNEGFEVILGTDVSYIP 467 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d~~y~~ 467 (564)
.....+||+|++ ++.|+.
T Consensus 72 --~~~~~~~d~vi~-n~Py~~ 89 (169)
T smart00650 72 --DLPKLQPYKVVG-NLPYNI 89 (169)
T ss_pred --CccccCCCEEEE-CCCccc
Confidence 122336898875 567764
No 306
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=7.7e-07 Score=82.64 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=99.6
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHh-cCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAA-GSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~-~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
+.|+.....+.+|.+|||.|.|+|.++..++. .+. .+|+..|+.++..+.|++|+..-++. +++....-|-.+.
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~---d~v~~~~~Dv~~~- 158 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG---DRVTLKLGDVREG- 158 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc---cceEEEecccccc-
Confidence 44555566788999999999999988887774 343 69999999999999999999997664 3355544333222
Q ss_pred cchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEE
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV 522 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~ 522 (564)
.....||.|+ -+..+....+..++.+| +|+| .+. ++..--.......+.+++.||.=.
T Consensus 159 -------~~~~~vDav~-----LDmp~PW~~le~~~~~L-kpgg--------~~~-~y~P~veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 159 -------IDEEDVDAVF-----LDLPDPWNVLEHVSDAL-KPGG--------VVV-VYSPTVEQVEKTVEALRERGFVDI 216 (256)
T ss_pred -------ccccccCEEE-----EcCCChHHHHHHHHHHh-CCCc--------EEE-EEcCCHHHHHHHHHHHHhcCccch
Confidence 1223788875 45667888999999999 9987 332 222222222467888888899888
Q ss_pred EEcCCCCC
Q 008457 523 DKWPSKNS 530 (564)
Q Consensus 523 ~~~~~~~~ 530 (564)
+.+++...
T Consensus 217 e~~E~l~R 224 (256)
T COG2519 217 EAVETLVR 224 (256)
T ss_pred hhheeeeh
Confidence 88766433
No 307
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.60 E-value=1.3e-06 Score=88.39 Aligned_cols=107 Identities=20% Similarity=0.178 Sum_probs=85.5
Q ss_pred CCC-eEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRK-DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~-~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
+.. ++|-+|||.-.+...+.+-+ -..++.+|+|+..+.....+.......+.+...|+... .|++++||+|+.-
T Consensus 47 p~~~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l----~fedESFdiVIdk 121 (482)
T KOG2352|consen 47 PSDFKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQL----VFEDESFDIVIDK 121 (482)
T ss_pred hhhceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhc----cCCCcceeEEEec
Confidence 344 99999999999888887763 34699999999999988877654456678888888655 5689999999999
Q ss_pred ccccCCC--------hhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 154 FVLSAVS--------PEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 154 ~vl~~~~--------~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
..++++- .......+.++.|+|++||+++....
T Consensus 122 GtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 122 GTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 9888772 12345678999999999999888665
No 308
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.59 E-value=1.8e-06 Score=80.82 Aligned_cols=150 Identities=11% Similarity=0.017 Sum_probs=90.4
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCC-----------CCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-----------FLA 429 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~-----------~~~ 429 (564)
...|.+++...+ ..++.+|||+|||.|.-+..++.+ +.+|+++|+|+.+++.+.. .++... ...
T Consensus 20 ~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~ 94 (213)
T TIGR03840 20 NPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAG 94 (213)
T ss_pred CHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecC
Confidence 456677765532 136779999999999777777665 4579999999999997533 122210 112
Q ss_pred ceEEEEeecCCCccchhhhhhcCCCccEEEEeceee--CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----
Q 008457 430 KLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY--IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR---- 503 (564)
Q Consensus 430 ~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y--~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r---- 503 (564)
++++..-|..+.+ ....+.||.|+-.-++. ..+..+..++.+.++| +|+| ..+++++...
T Consensus 95 ~v~~~~~D~~~~~------~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lL-kpgG-------~~ll~~~~~~~~~~ 160 (213)
T TIGR03840 95 NIEIFCGDFFALT------AADLGPVDAVYDRAALIALPEEMRQRYAAHLLALL-PPGA-------RQLLITLDYDQSEM 160 (213)
T ss_pred ceEEEEccCCCCC------cccCCCcCEEEechhhccCCHHHHHHHHHHHHHHc-CCCC-------eEEEEEEEcCCCCC
Confidence 3554444443221 00124799998665443 3456677899999999 9987 1345544331
Q ss_pred -----cCChhHHHHHHHHcCCeEEEEcCCCCC
Q 008457 504 -----QVDEPSMLSAATQCGFRLVDKWPSKNS 530 (564)
Q Consensus 504 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~ 530 (564)
..+..++.+.+ ..+|.++.+.+...+
T Consensus 161 ~gpp~~~~~~eL~~~f-~~~~~i~~~~~~~~~ 191 (213)
T TIGR03840 161 AGPPFSVSPAEVEALY-GGHYEIELLESRDVL 191 (213)
T ss_pred CCcCCCCCHHHHHHHh-cCCceEEEEeecccc
Confidence 12223344433 346777777654433
No 309
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.59 E-value=1.7e-06 Score=82.54 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=102.3
Q ss_pred hhHHHHhhhcc----CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc-----------------
Q 008457 62 YLDKEWGRYFS----GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD----------------- 120 (564)
Q Consensus 62 ~~~~~~~~~l~----~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~----------------- 120 (564)
.+...+.++++ .....+||--|||.|+++..++.. |..+.|.|.|-.|+-..+-...
T Consensus 39 ~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~ 116 (270)
T PF07942_consen 39 PILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSF 116 (270)
T ss_pred HHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecc
Confidence 34445555544 255789999999999999999999 8899999999999644332100
Q ss_pred ------------------------ccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccC
Q 008457 121 ------------------------FTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLK 176 (564)
Q Consensus 121 ------------------------~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lk 176 (564)
....++....+|+...-.. +-..++||+|+.++.+.-. .++..+|+.|.++||
T Consensus 117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~-~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGP-DENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLK 193 (270)
T ss_pred cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCC-cccCCcccEEEEEEEeech--HHHHHHHHHHHHHhc
Confidence 0012334444454322110 0013699999999777655 589999999999999
Q ss_pred CCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 177 PTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 177 pgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
|||+++=.-+...... .. . .......-++.+++..+++..||+++....
T Consensus 194 pgG~WIN~GPLlyh~~-----~~--------~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 194 PGGYWINFGPLLYHFE-----PM--------S--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred cCCEEEecCCccccCC-----CC--------C--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9997764222111100 00 0 000111246899999999999999986544
No 310
>PRK00811 spermidine synthase; Provisional
Probab=98.58 E-value=6.3e-07 Score=87.89 Aligned_cols=139 Identities=16% Similarity=0.159 Sum_probs=86.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCC-CCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKP-PFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~-~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
+.++||+||||.|+++..++.. ...+|+++|+++++++.+++++...... ....++++..-|- ..-+ ....+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da-----~~~l-~~~~~ 149 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDG-----IKFV-AETEN 149 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECch-----HHHH-hhCCC
Confidence 4679999999999888877775 4579999999999999999987642211 1124555543332 1111 11356
Q ss_pred CccEEEEecee--eCCC---ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeEEEEc
Q 008457 454 GFEVILGTDVS--YIPE---AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 454 ~fD~Ii~~d~~--y~~~---~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~~~~~ 525 (564)
+||+|++ |+. +... .-..+++.++++| +|+| ++++......... ....+.+++. |.....+
T Consensus 150 ~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L-~~gG--------vlv~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~ 218 (283)
T PRK00811 150 SFDVIIV-DSTDPVGPAEGLFTKEFYENCKRAL-KEDG--------IFVAQSGSPFYQADEIKDMHRKLKEV-FPIVRPY 218 (283)
T ss_pred cccEEEE-CCCCCCCchhhhhHHHHHHHHHHhc-CCCc--------EEEEeCCCcccCHHHHHHHHHHHHHH-CCCEEEE
Confidence 8999985 431 1111 1267788999999 9988 6665432221122 2445666665 4555555
Q ss_pred CCCCCC
Q 008457 526 PSKNSA 531 (564)
Q Consensus 526 ~~~~~~ 531 (564)
....|.
T Consensus 219 ~~~vp~ 224 (283)
T PRK00811 219 QAAIPT 224 (283)
T ss_pred EeECCc
Confidence 444444
No 311
>PHA03412 putative methyltransferase; Provisional
Probab=98.57 E-value=3.7e-07 Score=84.77 Aligned_cols=92 Identities=13% Similarity=0.087 Sum_probs=63.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhc----CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 376 AGKKVLELGCGCGGICSMVAAG----SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~----~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
.+.+|||+|||+|.++..++.. ...+|+++|+++.+++.+++|+.. +.+..-|.... . .
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~---------~~~~~~D~~~~-------~-~ 111 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE---------ATWINADALTT-------E-F 111 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC---------CEEEEcchhcc-------c-c
Confidence 4679999999999888877654 245899999999999999988531 22332222111 1 1
Q ss_pred CCCccEEEEeceeeCC------------CChHHHHHHHHHHhhccC
Q 008457 452 NEGFEVILGTDVSYIP------------EAILPLFATAKELTASSN 485 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~------------~~~~~l~~~~~~ll~~~~ 485 (564)
+.+||+||++...+.. ..+..+++...+|+ +++
T Consensus 112 ~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll-~~G 156 (241)
T PHA03412 112 DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIA-RQG 156 (241)
T ss_pred cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHc-CCC
Confidence 3589999988766521 23566888888866 554
No 312
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.57 E-value=6.6e-07 Score=93.52 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=85.3
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.++.+|||+|||+|+.+..++... ..+|+++|+++.+++.+++|+..++.. ++.+...|-.+... ......
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~----~v~~~~~D~~~~~~---~~~~~~ 323 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK----SIKILAADSRNLLE---LKPQWR 323 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC----eEEEEeCChhhccc---cccccc
Confidence 467899999999999888877653 358999999999999999999998863 45555444322110 001124
Q ss_pred CCccEEEEec------eeeCCC----------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE--eeccCChh
Q 008457 453 EGFEVILGTD------VSYIPE----------------AILPLFATAKELTASSNKSLREDQQPAFILCH--IFRQVDEP 508 (564)
Q Consensus 453 ~~fD~Ii~~d------~~y~~~----------------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~--~~r~~~~~ 508 (564)
++||.|+.-- ++.... ....+++.+.++| +|+| .++.+. ..+.+.+.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l-kpgG--------~lvystcsi~~~Ene~ 394 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLL-KPGG--------TLVYATCTLHPAENEA 394 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhc-CCCC--------EEEEEeCCCChhhHHH
Confidence 6899998521 121111 1357788999999 9987 554433 33333343
Q ss_pred HHHHHHHHc-CCeEE
Q 008457 509 SMLSAATQC-GFRLV 522 (564)
Q Consensus 509 ~~~~~~~~~-g~~~~ 522 (564)
.+...+++. +|++.
T Consensus 395 ~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 395 QIEQFLARHPDWKLE 409 (434)
T ss_pred HHHHHHHhCCCcEec
Confidence 444555555 56644
No 313
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.57 E-value=1.1e-06 Score=91.49 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.++.+|||+|||+|+.+..++... ..+|+++|+++.+++.+++|+...+. ..+.+...|.... .....
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~----~~v~~~~~Da~~l------~~~~~ 305 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL----SSIEIKIADAERL------TEYVQ 305 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC----CeEEEEECchhhh------hhhhh
Confidence 477899999999999888877653 56999999999999999999998775 2466665554321 11224
Q ss_pred CCccEEEEeceeeCCC-----------------------ChHHHHHHHHHHhhccCC
Q 008457 453 EGFEVILGTDVSYIPE-----------------------AILPLFATAKELTASSNK 486 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~-----------------------~~~~l~~~~~~ll~~~~g 486 (564)
++||.|+. |+.+... .-..++..+.++| +|+|
T Consensus 306 ~~fD~Vl~-DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L-kpGG 360 (431)
T PRK14903 306 DTFDRILV-DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLL-EKGG 360 (431)
T ss_pred ccCCEEEE-CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCCC
Confidence 58999984 3332110 1255688888999 9988
No 314
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.57 E-value=8e-07 Score=92.70 Aligned_cols=114 Identities=21% Similarity=0.098 Sum_probs=75.0
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
++..++.++. ..++.+|||+|||+|+.+..++... ..+|+++|.++.+++.+++|+..++.. ..+.....|.
T Consensus 226 ~s~~~~~~L~----~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~---~~v~~~~~d~ 298 (426)
T TIGR00563 226 SAQWVATWLA----PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT---IKAETKDGDG 298 (426)
T ss_pred HHHHHHHHhC----CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEecccc
Confidence 4455555553 3467899999999998888887754 469999999999999999999988763 1122222221
Q ss_pred CCCccchhhhhhcCCCccEEEEe------ceeeCCCC----------------hHHHHHHHHHHhhccCC
Q 008457 439 GNRDHIEAIKEENNEGFEVILGT------DVSYIPEA----------------ILPLFATAKELTASSNK 486 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~------d~~y~~~~----------------~~~l~~~~~~ll~~~~g 486 (564)
... .. .....+||.|+.- .++..... -..+++.+.++| +|+|
T Consensus 299 ~~~---~~--~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~L-kpgG 362 (426)
T TIGR00563 299 RGP---SQ--WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLL-KTGG 362 (426)
T ss_pred ccc---cc--cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 111 00 0124589999841 12222111 357888999999 9988
No 315
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.57 E-value=6e-07 Score=90.13 Aligned_cols=109 Identities=11% Similarity=0.068 Sum_probs=78.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.+..+||||||+|.+...++... ...++++|+++.+++.+.+++..+++ .++.+...|.... +..+++++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL----~NV~~i~~DA~~l-----l~~~~~~s 192 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL----KNLLIINYDARLL-----LELLPSNS 192 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC----CcEEEEECCHHHh-----hhhCCCCc
Confidence 56799999999998887777765 45899999999999999999998876 3566665543211 11346789
Q ss_pred ccEEEEece-eeCCC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 455 FEVILGTDV-SYIPE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 455 fD~Ii~~d~-~y~~~-----~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
+|.|+..=. .+... ..+.+++.+.++| +++| .+.+.+-.
T Consensus 193 ~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvL-kpGG--------~l~l~TD~ 237 (390)
T PRK14121 193 VEKIFVHFPVPWDKKPHRRVISEDFLNEALRVL-KPGG--------TLELRTDS 237 (390)
T ss_pred eeEEEEeCCCCccccchhhccHHHHHHHHHHHc-CCCc--------EEEEEEEC
Confidence 999985411 11111 1278999999999 9988 66665443
No 316
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.56 E-value=1e-06 Score=89.53 Aligned_cols=142 Identities=14% Similarity=0.061 Sum_probs=88.8
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
+..|.+++...... .+.+||||+||+|.++..+ +..+.+|+++|.++.+++.+++|+..|++ .++.+...|..+
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~l-a~~~~~v~~vE~~~~ai~~a~~N~~~~~~----~~v~~~~~d~~~ 265 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLAL-ARNFRRVLATEISKPSVAAAQYNIAANGI----DNVQIIRMSAEE 265 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHH-HhhCCEEEEEECCHHHHHHHHHHHHHhCC----CcEEEEECCHHH
Confidence 44556665543221 2357999999999888744 45567999999999999999999999986 356666555432
Q ss_pred Cccchhhhhh-----------cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhH
Q 008457 441 RDHIEAIKEE-----------NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS 509 (564)
Q Consensus 441 ~~~~~~~~~~-----------~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~ 509 (564)
. +..+... ...+||+|+. |..+ ....+.+++.+ . ++++ .+|++....... ++
T Consensus 266 ~--l~~~~~~~~~~~~~~~~~~~~~~D~v~l-DPPR-~G~~~~~l~~l---~-~~~~--------ivyvSC~p~tla-rD 328 (362)
T PRK05031 266 F--TQAMNGVREFNRLKGIDLKSYNFSTIFV-DPPR-AGLDDETLKLV---Q-AYER--------ILYISCNPETLC-EN 328 (362)
T ss_pred H--HHHHhhcccccccccccccCCCCCEEEE-CCCC-CCCcHHHHHHH---H-ccCC--------EEEEEeCHHHHH-HH
Confidence 1 1111100 0225898874 7776 34455555444 4 4544 888887664322 22
Q ss_pred HHHHHHHcCCeEEEEcCC
Q 008457 510 MLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 510 ~~~~~~~~g~~~~~~~~~ 527 (564)
+. .+.+ |++++++..+
T Consensus 329 l~-~L~~-gY~l~~v~~~ 344 (362)
T PRK05031 329 LE-TLSQ-THKVERFALF 344 (362)
T ss_pred HH-HHcC-CcEEEEEEEc
Confidence 33 3333 9999988633
No 317
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.55 E-value=1.8e-06 Score=84.32 Aligned_cols=140 Identities=14% Similarity=0.166 Sum_probs=86.4
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..++||+||||+|+++..++... ..+|+++|+++++++.+++++...+......++++..- +...-+. ...++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~-----D~~~~l~-~~~~~ 145 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQID-----DGFKFLA-DTENT 145 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEEC-----chHHHHH-hCCCC
Confidence 34599999999998887776655 56899999999999999998754322112234544432 1121111 12468
Q ss_pred ccEEEEeceeeC---CCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh---HHHHHHHHcCCeEEEEcC
Q 008457 455 FEVILGTDVSYI---PEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 455 fD~Ii~~d~~y~---~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~g~~~~~~~~ 526 (564)
||+|+. |.... ... ...+++.++++| +|+| ++++.......... .....+++. |.....+.
T Consensus 146 yDvIi~-D~~~~~~~~~~l~~~ef~~~~~~~L-~pgG--------~lv~~~~~~~~~~~~~~~~~~tl~~~-F~~v~~~~ 214 (270)
T TIGR00417 146 FDVIIV-DSTDPVGPAETLFTKEFYELLKKAL-NEDG--------IFVAQSESPWIQLELITDLKRDVKEA-FPITEYYT 214 (270)
T ss_pred ccEEEE-eCCCCCCcccchhHHHHHHHHHHHh-CCCc--------EEEEcCCCcccCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 999985 43311 111 467789999999 9988 76665333222222 223445444 66666665
Q ss_pred CCCCCC
Q 008457 527 SKNSAS 532 (564)
Q Consensus 527 ~~~~~~ 532 (564)
...|..
T Consensus 215 ~~vp~~ 220 (270)
T TIGR00417 215 ANIPTY 220 (270)
T ss_pred EEcCcc
Confidence 555543
No 318
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.55 E-value=1.1e-06 Score=82.08 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=89.4
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
...++||||||.|.+...++. ...+|++|+.|+.|...+++. +.. -....+|.+. +.+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~k----g~~------vl~~~~w~~~----------~~~f 152 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSKK----GFT------VLDIDDWQQT----------DFKF 152 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHhC----CCe------EEehhhhhcc----------CCce
Confidence 567899999999988777754 456799999999887766542 221 2233456543 3489
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------ccCC-------------hhH
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------RQVD-------------EPS 509 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-------------r~~~-------------~~~ 509 (564)
|+|.+..++=.-...-.|++.+++.| +|+| .++++..- ++.. ...
T Consensus 153 DvIscLNvLDRc~~P~~LL~~i~~~l-~p~G--------~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~ 223 (265)
T PF05219_consen 153 DVISCLNVLDRCDRPLTLLRDIRRAL-KPNG--------RLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSS 223 (265)
T ss_pred EEEeehhhhhccCCHHHHHHHHHHHh-CCCC--------EEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHH
Confidence 99999999999999999999999999 9988 55555332 0111 125
Q ss_pred HHHHHHHcCCeEEEEcCC
Q 008457 510 MLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 510 ~~~~~~~~g~~~~~~~~~ 527 (564)
|++.+..+||+++...+.
T Consensus 224 l~~v~~p~GF~v~~~tr~ 241 (265)
T PF05219_consen 224 LVNVFEPAGFEVERWTRL 241 (265)
T ss_pred HHHHHHhcCCEEEEEecc
Confidence 667888899999987644
No 319
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.54 E-value=7e-07 Score=84.90 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=84.4
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCC----
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI---- 142 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~---- 142 (564)
++...+..+|||||+++|.-+..+++.. ++.+++.+|.+++..+.|++.+...+ .+|+++.+++... ++.-.
T Consensus 74 l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~-L~~l~~~~~ 152 (247)
T PLN02589 74 LLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV-LDQMIEDGK 152 (247)
T ss_pred HHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH-HHHHHhccc
Confidence 3444678899999999999999998874 47899999999999999999876544 7899999987542 11000
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
..++||+|+.-.- ......++..+.++|+|||.+++-
T Consensus 153 ~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 153 YHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 1368999999543 345667888889999999998874
No 320
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.2e-06 Score=79.62 Aligned_cols=112 Identities=16% Similarity=0.080 Sum_probs=74.9
Q ss_pred ceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEE
Q 008457 355 LMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK 434 (564)
Q Consensus 355 ~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~ 434 (564)
+-.|-++..+...|.+...+.++.+|||||||+|.. .+++++...+|+.+|..++..+.+++|+...+. .++.+.
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~-aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~----~nV~v~ 125 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQ-AAVLARLVGRVVSIERIEELAEQARRNLETLGY----ENVTVR 125 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHH-HHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC----CceEEE
Confidence 334444554455555555677899999999999944 444455555999999999999999999998876 346666
Q ss_pred EeecCCCccchhhhhhc-CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 435 RLEWGNRDHIEAIKEEN-NEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 435 ~l~w~~~~~~~~~~~~~-~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.-|-... ++ ..+||.|+..-.. +.+-+.+.+-| +++|
T Consensus 126 ~gDG~~G--------~~~~aPyD~I~Vtaaa------~~vP~~Ll~QL-~~gG 163 (209)
T COG2518 126 HGDGSKG--------WPEEAPYDRIIVTAAA------PEVPEALLDQL-KPGG 163 (209)
T ss_pred ECCcccC--------CCCCCCcCEEEEeecc------CCCCHHHHHhc-ccCC
Confidence 5542221 22 2689998854322 22234555667 8887
No 321
>PRK01581 speE spermidine synthase; Validated
Probab=98.53 E-value=1.3e-06 Score=86.40 Aligned_cols=135 Identities=19% Similarity=0.120 Sum_probs=84.8
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHH---hcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVT---ANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~---~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
..++||+||||+|+....++... ..+|+++|+++++++.+++.-. .|.......++++..-|- .+-+ ...
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da-----~~fL-~~~ 223 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA-----KEFL-SSP 223 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH-----HHHH-Hhc
Confidence 45699999999997666666543 4699999999999999996321 122111224555543322 1111 123
Q ss_pred CCCccEEEEeceeeCCC-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeE
Q 008457 452 NEGFEVILGTDVSYIPE-------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRL 521 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~-------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~ 521 (564)
.++||+|+ .|+. ++. .-..+++.+++.| +|+| ++++......... ..+...+++.|+.+
T Consensus 224 ~~~YDVII-vDl~-DP~~~~~~~LyT~EFy~~~~~~L-kPgG--------V~V~Qs~sp~~~~~~~~~i~~tL~~af~~v 292 (374)
T PRK01581 224 SSLYDVII-IDFP-DPATELLSTLYTSELFARIATFL-TEDG--------AFVCQSNSPADAPLVYWSIGNTIEHAGLTV 292 (374)
T ss_pred CCCccEEE-EcCC-CccccchhhhhHHHHHHHHHHhc-CCCc--------EEEEecCChhhhHHHHHHHHHHHHHhCCce
Confidence 46899998 4532 221 1256889999999 9988 6555433221111 23567788899988
Q ss_pred EEEcCC
Q 008457 522 VDKWPS 527 (564)
Q Consensus 522 ~~~~~~ 527 (564)
......
T Consensus 293 ~~y~t~ 298 (374)
T PRK01581 293 KSYHTI 298 (374)
T ss_pred EEEEEe
Confidence 866544
No 322
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.53 E-value=8.8e-07 Score=81.62 Aligned_cols=106 Identities=8% Similarity=0.042 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||+|||+|.++..++.+. ..+|+++|.++.+++.++++....+ .++.++++|+... +. ...++||+|++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~-l~--~~~~~fDlV~~ 127 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF-LA--QPGTPHNVVFV 127 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH-Hh--hcCCCceEEEE
Confidence 457899999999999998655553 4689999999999999988765433 4688999998532 11 12457999999
Q ss_pred cccccCCChhHHHHHHHHHHh--ccCCCeEEEEEec
Q 008457 153 VFVLSAVSPEKMSLVLQNIKK--VLKPTGYVLFRDY 186 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r--~LkpgG~lii~~~ 186 (564)
+=-+..- -...++..+.. +|+|+|.+++...
T Consensus 128 DPPy~~g---~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 128 DPPFRKG---LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CCCCCCC---hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 6553221 23344555544 4899998888643
No 323
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.51 E-value=1.4e-06 Score=85.02 Aligned_cols=138 Identities=16% Similarity=0.177 Sum_probs=102.1
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe-ecCC
Q 008457 362 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL-EWGN 440 (564)
Q Consensus 362 ~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l-~w~~ 440 (564)
..||+.+..-....+|..|||=-||||++.+.+... +.+|+++|++..|++-++.|++.-++. ...+... |-.+
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~----~~~~~~~~Da~~ 257 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIE----DYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcC----ceeEEEeccccc
Confidence 356777777667778999999999999887776654 468999999999999999999987753 1211111 2222
Q ss_pred CccchhhhhhcCCCccEEEEeceeeCCC----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHH
Q 008457 441 RDHIEAIKEENNEGFEVILGTDVSYIPE----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSM 510 (564)
Q Consensus 441 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~----------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~ 510 (564)
. +++..++|.|+ +|..|... .+..+++++.+.| +++| .+.++.. ...
T Consensus 258 l-------pl~~~~vdaIa-tDPPYGrst~~~~~~l~~Ly~~~le~~~evL-k~gG--------~~vf~~p------~~~ 314 (347)
T COG1041 258 L-------PLRDNSVDAIA-TDPPYGRSTKIKGEGLDELYEEALESASEVL-KPGG--------RIVFAAP------RDP 314 (347)
T ss_pred C-------CCCCCccceEE-ecCCCCcccccccccHHHHHHHHHHHHHHHh-hcCc--------EEEEecC------Ccc
Confidence 1 34555799875 89999744 3788899999999 8877 7777766 224
Q ss_pred HHHHHHcCCeEEEEcCC
Q 008457 511 LSAATQCGFRLVDKWPS 527 (564)
Q Consensus 511 ~~~~~~~g~~~~~~~~~ 527 (564)
.+.+.+.||++...+..
T Consensus 315 ~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 315 RHELEELGFKVLGRFTM 331 (347)
T ss_pred hhhHhhcCceEEEEEEE
Confidence 56677889999998744
No 324
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.51 E-value=1.7e-06 Score=85.37 Aligned_cols=154 Identities=14% Similarity=0.034 Sum_probs=91.6
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc---CCCeeEEEe-cCCcccccCC--CCCCcee
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVC-DLISDDLSRQ--ISPSSID 148 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~---~~~i~~~~~-d~~~~~~~~~--~~~~~fD 148 (564)
.+.++||||||+|.....++.+.++.+++|+|+++.+++.|+...... ..++.+... +... +..+ .+.+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~--i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA--IFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh--hhhcccccCCceE
Confidence 568999999999988888877777899999999999999999887654 245666532 2211 1111 1467899
Q ss_pred EEEEcccccCCChhH---HHHHHHH----------------HHhccCCCeEEEEEecCCCchhhhhhcccccccccceee
Q 008457 149 IVTMVFVLSAVSPEK---MSLVLQN----------------IKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYV 209 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~---~~~~l~~----------------~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (564)
+|+|+=-++--..+. -..-.+. ..+++.+||.+-+........ ..+.. ...+|.
T Consensus 192 livcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS--~~~~~-----~~gwft 264 (321)
T PRK11727 192 ATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES--KAFAK-----QVLWFT 264 (321)
T ss_pred EEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH--HHHHh-----hCcEEE
Confidence 999987655332111 1111111 234455777765543332211 00000 011221
Q ss_pred cCCCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 210 RGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
..-+.. -+.+.+.+.+++.|...+.+..
T Consensus 265 smv~kk---~~l~~l~~~L~~~~~~~~~~~e 292 (321)
T PRK11727 265 SLVSKK---ENLPPLYRALKKVGAVEVKTIE 292 (321)
T ss_pred EEeecc---CCHHHHHHHHHHcCCceEEEEE
Confidence 111111 2688999999999996554433
No 325
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.51 E-value=5e-07 Score=80.98 Aligned_cols=95 Identities=15% Similarity=0.229 Sum_probs=72.4
Q ss_pred CCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEE---EeecCCCccchh
Q 008457 371 NPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK---RLEWGNRDHIEA 446 (564)
Q Consensus 371 ~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~---~l~w~~~~~~~~ 446 (564)
+-.+....+|.|||||+|-..-+++.+. .+.|+++|-|++|++.++...- ++.+. --+|.
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp---------~~~f~~aDl~~w~------- 88 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP---------DATFEEADLRTWK------- 88 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC---------CCceecccHhhcC-------
Confidence 3344567799999999995556666654 5699999999999998866421 12222 12232
Q ss_pred hhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 447 IKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+...+|+|+++-++..-.+|..|+..+-..| .|+|
T Consensus 89 ----p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L-~Pgg 123 (257)
T COG4106 89 ----PEQPTDLLFANAVLQWLPDHPELLPRLVSQL-APGG 123 (257)
T ss_pred ----CCCccchhhhhhhhhhccccHHHHHHHHHhh-CCCc
Confidence 3458999999999999999999999999999 9988
No 326
>PLN02366 spermidine synthase
Probab=98.51 E-value=2.8e-06 Score=83.75 Aligned_cols=140 Identities=14% Similarity=0.053 Sum_probs=86.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..++||+||||.|++...++... ..+|+++|+++++++.+++.+..........++++..-| ...-+...+.++
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D-----a~~~l~~~~~~~ 165 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD-----GVEFLKNAPEGT 165 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh-----HHHHHhhccCCC
Confidence 56899999999998887777654 468999999999999999987542212223456655433 111222223568
Q ss_pred ccEEEEeceeeCCC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee---ccCChhHHHHHHHHcCCeEEEEcC
Q 008457 455 FEVILGTDVSYIPE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIF---RQVDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 455 fD~Ii~~d~~y~~~-----~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
||+|+. |..-... .-..+++.++++| +|+| ++++-... .......+...+++....++....
T Consensus 166 yDvIi~-D~~dp~~~~~~L~t~ef~~~~~~~L-~pgG--------vlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~ 235 (308)
T PLN02366 166 YDAIIV-DSSDPVGPAQELFEKPFFESVARAL-RPGG--------VVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAW 235 (308)
T ss_pred CCEEEE-cCCCCCCchhhhhHHHHHHHHHHhc-CCCc--------EEEECcCCcccchHHHHHHHHHHHHHCCCceeEEE
Confidence 999985 5421111 1346789999999 9988 65442221 111123556777666544555433
Q ss_pred CCCC
Q 008457 527 SKNS 530 (564)
Q Consensus 527 ~~~~ 530 (564)
...|
T Consensus 236 ~~vP 239 (308)
T PLN02366 236 TTVP 239 (308)
T ss_pred ecCC
Confidence 3333
No 327
>PRK04148 hypothetical protein; Provisional
Probab=98.50 E-value=1.6e-06 Score=73.40 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=75.5
Q ss_pred hhhccCCCCCeEEEEcCCccc-cHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGN-TIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~-~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+.+...++.+|||||||.|. ++..|++. |.+|+++|+++..++.++... +.++..|+...++. .-..
T Consensus 9 ~~~~~~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~------~~~v~dDlf~p~~~---~y~~ 77 (134)
T PRK04148 9 AENYEKGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLG------LNAFVDDLFNPNLE---IYKN 77 (134)
T ss_pred HHhcccccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhC------CeEEECcCCCCCHH---HHhc
Confidence 334444566899999999996 88888876 789999999999999887763 57888998765432 2356
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
+|+|++.. |+.++...+.++.+.+ |.-+++.....
T Consensus 78 a~liysir-----pp~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 78 AKLIYSIR-----PPRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred CCEEEEeC-----CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 89999843 4457777788887755 45577764443
No 328
>PRK04148 hypothetical protein; Provisional
Probab=98.49 E-value=9.6e-07 Score=74.69 Aligned_cols=97 Identities=21% Similarity=0.109 Sum_probs=68.1
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccH-HHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGG-ICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~-l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
.+++|+..+....++++|||+|||+|. ++..+. ..+..|+++|+++.+++.++.+. +.+..-|+.+.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~~-----------~~~v~dDlf~p 70 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKLG-----------LNAFVDDLFNP 70 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhC-----------CeEEECcCCCC
Confidence 367888776555567899999999995 555555 44579999999999998887762 24444444433
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhcc
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASS 484 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~ 484 (564)
.+++-=++|++|...-.+.|..-+.++. +.
T Consensus 71 ------------~~~~y~~a~liysirpp~el~~~~~~la-~~ 100 (134)
T PRK04148 71 ------------NLEIYKNAKLIYSIRPPRDLQPFILELA-KK 100 (134)
T ss_pred ------------CHHHHhcCCEEEEeCCCHHHHHHHHHHH-HH
Confidence 3344446677788777777777777777 44
No 329
>PRK03612 spermidine synthase; Provisional
Probab=98.48 E-value=2.1e-06 Score=91.57 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=85.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCC---CCCCCceEEEEeecCCCccchhhhhhc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLK---PPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~---~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
+.++||+||||+|.++..+++... .+|+++|+|+++++.+++|...+.. .....++++..-| ..+.+ ...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~D-----a~~~l-~~~ 370 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDD-----AFNWL-RKL 370 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEECh-----HHHHH-HhC
Confidence 567999999999988877776554 7999999999999999996433221 1112455554332 11111 123
Q ss_pred CCCccEEEEeceeeCC------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeEE
Q 008457 452 NEGFEVILGTDVSYIP------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLV 522 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~~ 522 (564)
+++||+|++ |..... -.-..+++.++++| +|+| ++++......... ....+.+++.||.+.
T Consensus 371 ~~~fDvIi~-D~~~~~~~~~~~L~t~ef~~~~~~~L-~pgG--------~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 371 AEKFDVIIV-DLPDPSNPALGKLYSVEFYRLLKRRL-APDG--------LLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CCCCCEEEE-eCCCCCCcchhccchHHHHHHHHHhc-CCCe--------EEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 468999986 432211 11245889999999 9988 7776543322222 356788888999444
Q ss_pred E
Q 008457 523 D 523 (564)
Q Consensus 523 ~ 523 (564)
.
T Consensus 441 ~ 441 (521)
T PRK03612 441 P 441 (521)
T ss_pred E
Confidence 3
No 330
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.46 E-value=1.3e-06 Score=81.07 Aligned_cols=113 Identities=18% Similarity=0.255 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc--cCCCeeEEEecCCccccc-CCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLS-RQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~--~~~~i~~~~~d~~~~~~~-~~~~~~~fD~V 150 (564)
..+..|||+|||+|..+..++...|.+.|+++|.|+.++..|.++... ..+.+..+..++..+... .+.+.+++|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 455689999999999999999888899999999999999999887643 235666665544433322 23567999999
Q ss_pred EEccc--cc----CC------------------ChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 151 TMVFV--LS----AV------------------SPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 151 ~~~~v--l~----~~------------------~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
++|=- .+ .+ ..+....++.-+.|.|+|||.+.+...
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 99642 11 00 012344666777899999999998654
No 331
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.45 E-value=2.1e-06 Score=79.39 Aligned_cols=101 Identities=12% Similarity=0.127 Sum_probs=75.3
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEE-eecCCCccchhhhhh
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR-LEWGNRDHIEAIKEE 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~-l~w~~~~~~~~~~~~ 450 (564)
....++|||||++.|.-++.++... ..+++.+|.+++..+.+++|+...+.. +++.... .|+ .+.+...
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~---~~i~~~~~gda-----l~~l~~~ 128 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD---DRIELLLGGDA-----LDVLSRL 128 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEEecCcH-----HHHHHhc
Confidence 3478899999999994444444332 358999999999999999999999885 4455554 333 3333334
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..++||+|+. | -.....+..+..+.++| +|+|
T Consensus 129 ~~~~fDliFI-D--adK~~yp~~le~~~~lL-r~GG 160 (219)
T COG4122 129 LDGSFDLVFI-D--ADKADYPEYLERALPLL-RPGG 160 (219)
T ss_pred cCCCccEEEE-e--CChhhCHHHHHHHHHHh-CCCc
Confidence 5689999872 2 35778899999999999 9988
No 332
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=4e-07 Score=75.98 Aligned_cols=81 Identities=23% Similarity=0.305 Sum_probs=58.2
Q ss_pred CCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 371 NPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 371 ~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
....++|+.++|||||+|.+...++......|+++|++|++++.+.+|.+.-.+.. +-+++.-++- .+
T Consensus 43 TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi--dlLqcdildl----------e~ 110 (185)
T KOG3420|consen 43 TYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI--DLLQCDILDL----------EL 110 (185)
T ss_pred hhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh--heeeeeccch----------hc
Confidence 34567999999999999988755555667799999999999999999998765531 1222222211 23
Q ss_pred cCCCccEEEEece
Q 008457 451 NNEGFEVILGTDV 463 (564)
Q Consensus 451 ~~~~fD~Ii~~d~ 463 (564)
..+.||..+.+..
T Consensus 111 ~~g~fDtaviNpp 123 (185)
T KOG3420|consen 111 KGGIFDTAVINPP 123 (185)
T ss_pred cCCeEeeEEecCC
Confidence 3478999886554
No 333
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.45 E-value=8.7e-07 Score=85.89 Aligned_cols=85 Identities=21% Similarity=0.235 Sum_probs=67.3
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCC
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 143 (564)
...+.+.+...++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++... ..+++++++|+....+
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~~----- 89 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVDL----- 89 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCCc-----
Confidence 344445555567899999999999999999998 56899999999999999987653 4579999999865322
Q ss_pred CCceeEEEEccccc
Q 008457 144 PSSIDIVTMVFVLS 157 (564)
Q Consensus 144 ~~~fD~V~~~~vl~ 157 (564)
..||.|+++.-.+
T Consensus 90 -~~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 -PEFNKVVSNLPYQ 102 (258)
T ss_pred -hhceEEEEcCCcc
Confidence 2479999976644
No 334
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.45 E-value=1.2e-06 Score=87.03 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=72.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
++.+|||||||+|..+..++... ..+|+++|+|++|++.+++++...... -++....-|..+. ........ .
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~---~~v~~i~gD~~~~--~~~~~~~~-~ 136 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ---LEVHGICADFTQP--LALPPEPA-A 136 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC---ceEEEEEEcccch--hhhhcccc-c
Confidence 56799999999998888777665 468999999999999999987653321 1233333333221 10000000 1
Q ss_pred CccEEEEe-ceeeC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 454 GFEVILGT-DVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 454 ~fD~Ii~~-d~~y~--~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
..++++.. -++++ .+....+++.+.+.| +|+| .+++....
T Consensus 137 ~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L-~pgG--------~~lig~d~ 179 (301)
T TIGR03438 137 GRRLGFFPGSTIGNFTPEEAVAFLRRIRQLL-GPGG--------GLLIGVDL 179 (301)
T ss_pred CCeEEEEecccccCCCHHHHHHHHHHHHHhc-CCCC--------EEEEeccC
Confidence 13444433 35554 445677999999999 9988 77776544
No 335
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.5e-07 Score=79.17 Aligned_cols=109 Identities=19% Similarity=0.149 Sum_probs=81.8
Q ss_pred HHHHhhhcc--CCCCCeEEEEcCCccccHHHHHHh--CCCcEEEEEeCChHHHHHHHhccccc-----------CCCeeE
Q 008457 64 DKEWGRYFS--GAGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFT-----------ETRVST 128 (564)
Q Consensus 64 ~~~~~~~l~--~~~~~~VLDiGcG~G~~~~~l~~~--~~~~~v~~iD~s~~~l~~a~~~~~~~-----------~~~i~~ 128 (564)
.....+++. ..++.+.||+|+|+|.++..++.. .++..++|||.-++.++.++++..+. ..++.+
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 344445555 489999999999999999988866 35666699999999999999875432 246778
Q ss_pred EEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 129 FVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+.+|.....- ...+||.|++...-. ...+++...|+|||.+++-
T Consensus 149 vvGDgr~g~~----e~a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 149 VVGDGRKGYA----EQAPYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EeCCccccCC----ccCCcceEEEccCcc--------ccHHHHHHhhccCCeEEEe
Confidence 8888764321 567899999975433 3456677788999999984
No 336
>PLN02823 spermine synthase
Probab=98.43 E-value=1.1e-06 Score=87.59 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-----CCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----ETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+.+||.||+|.|..++.+++..+..+++.+|+++.+++.|++.+... ..+++++..|....- .-..++||
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yD 178 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFD 178 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCcc
Confidence 4568999999999999998888655678999999999999999886432 368899999886432 12357899
Q ss_pred EEEEcccccCC---Chh--HHHHHHH-HHHhccCCCeEEEEE
Q 008457 149 IVTMVFVLSAV---SPE--KMSLVLQ-NIKKVLKPTGYVLFR 184 (564)
Q Consensus 149 ~V~~~~vl~~~---~~~--~~~~~l~-~~~r~LkpgG~lii~ 184 (564)
+|++-.. ... +.. --..+++ .+.+.|+|||++++.
T Consensus 179 vIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 179 VIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9998531 111 000 1245787 899999999998764
No 337
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.43 E-value=7e-07 Score=87.21 Aligned_cols=85 Identities=18% Similarity=0.105 Sum_probs=65.0
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 142 (564)
+...+.+.+...++.+|||||||+|.++..+++.. .+|+|+|+++.|++.++++... .+++++++|+....+
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~---- 101 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDL---- 101 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCH----
Confidence 34445555555788899999999999999999984 4899999999999999887642 679999999875432
Q ss_pred CCCceeEEEEccc
Q 008457 143 SPSSIDIVTMVFV 155 (564)
Q Consensus 143 ~~~~fD~V~~~~v 155 (564)
++-.+|.|+++--
T Consensus 102 ~~~~~~~vv~NlP 114 (272)
T PRK00274 102 SELQPLKVVANLP 114 (272)
T ss_pred HHcCcceEEEeCC
Confidence 2211477877643
No 338
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.43 E-value=2.4e-06 Score=77.73 Aligned_cols=138 Identities=20% Similarity=0.162 Sum_probs=86.1
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC--C--------EEEEEcCChhHHHHHHHHHHhcCCCCCCCceEE
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--D--------LVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 433 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~--~--------~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~ 433 (564)
||.-|.......++..|||--||+|.+.+.++.... . ++++.|+++++++.++.|+...+.. ..+.+
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~---~~i~~ 92 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE---DYIDF 92 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C---GGEEE
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC---CceEE
Confidence 444444433445778999999999999877765432 2 3899999999999999999988764 45666
Q ss_pred EEeecCCCccchhhhhhcCCCccEEEEeceeeCCC---------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc
Q 008457 434 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE---------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 434 ~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
...|..+. +...+.+|+|| +|..|... .+..+++.++++| ++ . .+++....+
T Consensus 93 ~~~D~~~l-------~~~~~~~d~Iv-tnPPyG~r~~~~~~~~~ly~~~~~~~~~~l-~~-~--------~v~l~~~~~- 153 (179)
T PF01170_consen 93 IQWDAREL-------PLPDGSVDAIV-TNPPYGRRLGSKKDLEKLYRQFLRELKRVL-KP-R--------AVFLTTSNR- 153 (179)
T ss_dssp EE--GGGG-------GGTTSBSCEEE-EE--STTSHCHHHHHHHHHHHHHHHHHCHS-TT-C--------EEEEEESCC-
T ss_pred Eecchhhc-------ccccCCCCEEE-ECcchhhhccCHHHHHHHHHHHHHHHHHHC-CC-C--------EEEEEECCH-
Confidence 55444322 23456899887 67777643 4455667777777 54 2 455544333
Q ss_pred CChhHHHHHHHHcCCeEEEEcCC
Q 008457 505 VDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 505 ~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
.+...+...+++..+...+
T Consensus 154 ----~~~~~~~~~~~~~~~~~~~ 172 (179)
T PF01170_consen 154 ----ELEKALGLKGWRKRKLYNG 172 (179)
T ss_dssp ----CHHHHHTSTTSEEEEEEET
T ss_pred ----HHHHHhcchhhceEEEEEe
Confidence 2455566668888877644
No 339
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.41 E-value=2.6e-06 Score=80.76 Aligned_cols=141 Identities=15% Similarity=0.150 Sum_probs=92.9
Q ss_pred HHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 366 AVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 366 ~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
.++....++.+|.+|||.|.|+|.++..++.. ...+|+..|..++-.+.+++|++.+++. +.+.+..-|..++..
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~---~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD---DNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC---TTEEEEES-GGCG--
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC---CCceeEecceecccc
Confidence 34445567789999999999999988887753 3459999999999999999999999884 578888877754321
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEE
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD 523 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~ 523 (564)
.+. ....+|.|+ -|+ ......+..+.+.|++++| .+.++..--.-.....+.+++.||.-.+
T Consensus 107 ~~~----~~~~~Davf-LDl----p~Pw~~i~~~~~~L~~~gG---------~i~~fsP~ieQv~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 107 DEE----LESDFDAVF-LDL----PDPWEAIPHAKRALKKPGG---------RICCFSPCIEQVQKTVEALREHGFTDIE 168 (247)
T ss_dssp STT-----TTSEEEEE-EES----SSGGGGHHHHHHHE-EEEE---------EEEEEESSHHHHHHHHHHHHHTTEEEEE
T ss_pred ccc----ccCcccEEE-EeC----CCHHHHHHHHHHHHhcCCc---------eEEEECCCHHHHHHHHHHHHHCCCeeeE
Confidence 111 135788765 344 4455556677777734544 4444444332234678899999998888
Q ss_pred EcCC
Q 008457 524 KWPS 527 (564)
Q Consensus 524 ~~~~ 527 (564)
.+++
T Consensus 169 ~~Ev 172 (247)
T PF08704_consen 169 TVEV 172 (247)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7655
No 340
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.40 E-value=2.6e-06 Score=86.22 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=75.4
Q ss_pred CCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 377 GKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
+.+|||+.||+|..++.++.. ++.+|++.|+|+.+++.+++|++.|+.. .+.+...|.. ..+ .....+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~----~~~v~~~Da~-----~~l-~~~~~~ 114 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE----NIEVPNEDAA-----NVL-RYRNRK 114 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----cEEEEchhHH-----HHH-HHhCCC
Confidence 358999999999999888886 5689999999999999999999999763 3444433221 111 112357
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
||+|.. |. |. ...++++.+-+.+ +++| .++++.+
T Consensus 115 fDvIdl-DP-fG--s~~~fld~al~~~-~~~g--------lL~vTaT 148 (374)
T TIGR00308 115 FHVIDI-DP-FG--TPAPFVDSAIQAS-AERG--------LLLVTAT 148 (374)
T ss_pred CCEEEe-CC-CC--CcHHHHHHHHHhc-ccCC--------EEEEEec
Confidence 998875 87 53 4468888888888 7776 6666643
No 341
>PLN02476 O-methyltransferase
Probab=98.39 E-value=2.6e-06 Score=82.05 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=73.5
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh-
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE- 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~- 450 (564)
..+.++|||||+|+|..+..++... ..+|+.+|.+++.++.+++|++.++.. +++++..-+ ..+.+..+
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~---~~I~li~Gd-----A~e~L~~l~ 187 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS---HKVNVKHGL-----AAESLKSMI 187 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcC-----HHHHHHHHH
Confidence 3467899999999995555554422 458999999999999999999999875 466665432 22333222
Q ss_pred ---cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 451 ---NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 451 ---~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..++||+|+ -|. +...+...++.+.++| +++|
T Consensus 188 ~~~~~~~FD~VF-IDa--~K~~Y~~y~e~~l~lL-~~GG 222 (278)
T PLN02476 188 QNGEGSSYDFAF-VDA--DKRMYQDYFELLLQLV-RVGG 222 (278)
T ss_pred hcccCCCCCEEE-ECC--CHHHHHHHHHHHHHhc-CCCc
Confidence 135899987 333 3567889999999999 9987
No 342
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.39 E-value=7.5e-07 Score=86.40 Aligned_cols=104 Identities=22% Similarity=0.204 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
..++.|||||||+|.++..-++.+ ..+|+++|.|.-+ +.|++....++ +.|+++.+.+.+..+ |.+++|+|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L----P~eKVDiIv 132 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL----PVEKVDIIV 132 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec----CccceeEEe
Confidence 578999999999999998888886 6789999986654 77777654433 457888888865544 468999999
Q ss_pred EcccccCCC-hhHHHHHHHHHHhccCCCeEEEE
Q 008457 152 MVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 152 ~~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii 183 (564)
+-+.=+++- ..-+..+|-.=-+.|+|||.++=
T Consensus 133 SEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 133 SEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred ehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 966444332 12334455555699999999873
No 343
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.39 E-value=8.8e-07 Score=82.20 Aligned_cols=112 Identities=17% Similarity=0.117 Sum_probs=72.1
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
+...+++...+.++.+|||+|||+|..+.+++...+ .+|+++|.++.+++.+++|+...+. .++.+..-|-...
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~----~nv~~~~gdg~~g 135 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI----DNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT----HSEEEEES-GGGT
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc----CceeEEEcchhhc
Confidence 344444445577899999999999977777776532 3799999999999999999998776 3566655442111
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
+ -...+||.|+..-... ... ..+.+.| +++| ++++...
T Consensus 136 -----~--~~~apfD~I~v~~a~~--~ip----~~l~~qL-~~gG--------rLV~pi~ 173 (209)
T PF01135_consen 136 -----W--PEEAPFDRIIVTAAVP--EIP----EALLEQL-KPGG--------RLVAPIG 173 (209)
T ss_dssp -----T--GGG-SEEEEEESSBBS--S------HHHHHTE-EEEE--------EEEEEES
T ss_pred -----c--ccCCCcCEEEEeeccc--hHH----HHHHHhc-CCCc--------EEEEEEc
Confidence 1 1235899998764442 222 3455668 8887 6666544
No 344
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.37 E-value=1.7e-06 Score=84.82 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=68.0
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCC
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~ 141 (564)
...+.+.+...++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++.... ..+++++.+|+....+
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--- 99 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--- 99 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc---
Confidence 344445555578899999999999999999987 568999999999999999876532 3679999999965432
Q ss_pred CCCCceeEEEEcccccCC
Q 008457 142 ISPSSIDIVTMVFVLSAV 159 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~ 159 (564)
..||+|+++.-.+..
T Consensus 100 ---~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 100 ---PYFDVCVANVPYQIS 114 (294)
T ss_pred ---cccCEEEecCCcccC
Confidence 368988886554433
No 345
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.37 E-value=4.9e-06 Score=78.13 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=72.3
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCC-----------CCCc
Q 008457 362 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-----------FLAK 430 (564)
Q Consensus 362 ~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~-----------~~~~ 430 (564)
..|.+++... ...++.+||++|||.|.-+..++.+ +.+|+++|+++.+++.+.. .+++.. ...+
T Consensus 24 ~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~ 98 (218)
T PRK13255 24 PLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGE 98 (218)
T ss_pred HHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCc
Confidence 4556666532 1235679999999999777777665 5579999999999997642 222211 1123
Q ss_pred eEEEEeecCCCccchhhhhhcCCCccEEEEecee--eCCCChHHHHHHHHHHhhccCC
Q 008457 431 LITKRLEWGNRDHIEAIKEENNEGFEVILGTDVS--YIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 431 i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~--y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+.+..-|..+.. ....+.||+|+-.-++ ..++.....++.+.++| +|+|
T Consensus 99 v~~~~~D~~~l~------~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL-~pgG 149 (218)
T PRK13255 99 ITIYCGDFFALT------AADLADVDAVYDRAALIALPEEMRERYVQQLAALL-PAGC 149 (218)
T ss_pred eEEEECcccCCC------cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHc-CCCC
Confidence 444333332210 1112478998865543 34556788999999999 9987
No 346
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.36 E-value=2.1e-06 Score=87.35 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=72.8
Q ss_pred CCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc-CCC
Q 008457 377 GKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-NEG 454 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~-~~~ 454 (564)
+.+|||++||+|.++..++.. +..+|+++|+++.+++.+++|++.|++. .+.+..-|. ..+ +. ..+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~----~~~v~~~Da------~~~--l~~~~~ 125 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE----NEKVFNKDA------NAL--LHEERK 125 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ceEEEhhhH------HHH--HhhcCC
Confidence 468999999999888887664 4469999999999999999999999874 233332222 111 11 357
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
||+|+. |. | ....++++..-..+ +++| .++++.+.
T Consensus 126 fD~V~l-DP-~--Gs~~~~l~~al~~~-~~~g--------ilyvSAtD 160 (382)
T PRK04338 126 FDVVDI-DP-F--GSPAPFLDSAIRSV-KRGG--------LLCVTATD 160 (382)
T ss_pred CCEEEE-CC-C--CCcHHHHHHHHHHh-cCCC--------EEEEEecC
Confidence 999986 65 3 44567888866667 7777 77777443
No 347
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.36 E-value=4.5e-06 Score=80.79 Aligned_cols=71 Identities=20% Similarity=0.183 Sum_probs=57.4
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcc
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~ 136 (564)
+...+.+.+...++.+|||||||+|.++..+++.+ .+|+++|+++.+++.++.+... ..+++++.+|+...
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKV 87 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcC
Confidence 33445555555778999999999999999999985 4699999999999999887643 46788999998653
No 348
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.34 E-value=1.2e-06 Score=80.94 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh-hc
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-EN 451 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-~~ 451 (564)
.+.++|||||||+|.-+..++... ..+|+.+|.+++..+.+++|+...+.. ++|++..-+..+ .+..+.. ..
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~---~~I~~~~gda~~--~l~~l~~~~~ 118 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD---DRIEVIEGDALE--VLPELANDGE 118 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG---GGEEEEES-HHH--HHHHHHHTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC---CcEEEEEeccHh--hHHHHHhccC
Confidence 466799999999994444444322 469999999999999999999998874 577776544321 1222221 12
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.++||+|+. |. ....+...++.+.++| +++|
T Consensus 119 ~~~fD~VFi-Da--~K~~y~~y~~~~~~ll-~~gg 149 (205)
T PF01596_consen 119 EGQFDFVFI-DA--DKRNYLEYFEKALPLL-RPGG 149 (205)
T ss_dssp TTSEEEEEE-ES--TGGGHHHHHHHHHHHE-EEEE
T ss_pred CCceeEEEE-cc--cccchhhHHHHHhhhc-cCCe
Confidence 358999873 33 5677888899999999 9887
No 349
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.34 E-value=2.2e-06 Score=88.83 Aligned_cols=102 Identities=27% Similarity=0.329 Sum_probs=71.2
Q ss_pred CCeEEEEcCCccccHHHHHHhC----CCcEEEEEeCChHHHHHHHhcc--cccCCCeeEEEecCCcccccCCCCCCceeE
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAY----PDVFVYACDFSPRAVNLVMTHK--DFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~----~~~~v~~iD~s~~~l~~a~~~~--~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
...|||||||+|.++...++.. ...+|++++-++.+....+++. ....++|+++.+|+....+ ..++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-----pekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-----PEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-----SS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-----CCceeE
Confidence 6789999999999987776652 2469999999998887765542 2345789999999987655 248999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEE
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVL 182 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~li 182 (564)
|++-..=.....+-....|....|.|||||+++
T Consensus 262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 999332111112345567888899999999876
No 350
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.34 E-value=1.8e-06 Score=88.25 Aligned_cols=102 Identities=10% Similarity=0.046 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|+++....+ .++++.++|+..... . ...+||+|++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~--~-~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFAT--A-QMSAPELVLV 306 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHH--h-cCCCCCEEEE
Confidence 45689999999999999999866 5789999999999999998765443 378999999854221 1 1245999988
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.=--..+ ...+++.+. .++|++.++++.
T Consensus 307 DPPr~G~----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 307 NPPRRGI----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCCCCC----cHHHHHHHH-hcCCCeEEEEEe
Confidence 5221222 123445554 479999988863
No 351
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.31 E-value=4.8e-06 Score=84.34 Aligned_cols=140 Identities=14% Similarity=0.056 Sum_probs=85.9
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
+..|.+++.+.... .+.+|||||||+|.++..++ ..+.+|+++|.++++++.+++|+..|++. ++.+...|..+
T Consensus 183 ~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la-~~~~~v~~vE~~~~av~~a~~n~~~~~~~----~v~~~~~d~~~ 256 (353)
T TIGR02143 183 NIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALA-QNFRRVLATEIAKPSVNAAQYNIAANNID----NVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHH-HhCCEEEEEECCHHHHHHHHHHHHHcCCC----cEEEEEcCHHH
Confidence 34455555443322 23479999999998877554 44579999999999999999999999863 46666555432
Q ss_pred Cccchhhhh---h---c-----CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhH
Q 008457 441 RDHIEAIKE---E---N-----NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS 509 (564)
Q Consensus 441 ~~~~~~~~~---~---~-----~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~ 509 (564)
. +..... + . ...||+|+. |.. .....+.+++.+ + ++++ .+|++.......- +
T Consensus 257 ~--~~~~~~~~~~~~~~~~~~~~~~~d~v~l-DPP-R~G~~~~~l~~l---~-~~~~--------ivYvsC~p~tlaR-D 319 (353)
T TIGR02143 257 F--TQAMNGVREFRRLKGIDLKSYNCSTIFV-DPP-RAGLDPDTCKLV---Q-AYER--------ILYISCNPETLKA-N 319 (353)
T ss_pred H--HHHHhhccccccccccccccCCCCEEEE-CCC-CCCCcHHHHHHH---H-cCCc--------EEEEEcCHHHHHH-H
Confidence 1 110000 0 0 124898775 666 344455555544 4 4554 8888877655432 2
Q ss_pred HHHHHHHcCCeEEEEc
Q 008457 510 MLSAATQCGFRLVDKW 525 (564)
Q Consensus 510 ~~~~~~~~g~~~~~~~ 525 (564)
+ ..+. .|+++.++-
T Consensus 320 l-~~L~-~~Y~l~~v~ 333 (353)
T TIGR02143 320 L-EQLS-ETHRVERFA 333 (353)
T ss_pred H-HHHh-cCcEEEEEE
Confidence 2 2232 358888775
No 352
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.31 E-value=8.9e-06 Score=73.78 Aligned_cols=96 Identities=26% Similarity=0.287 Sum_probs=75.8
Q ss_pred eEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEcccc
Q 008457 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVL 156 (564)
Q Consensus 78 ~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl 156 (564)
+++|||+|.|.-+..|+-.+|..+++.+|....-+...+.-....+ .|+++.+..+.. +....+||+|++..+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-----~~~~~~fd~v~aRAv~ 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-----PEYRESFDVVTARAVA 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-----TTTTT-EEEEEEESSS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-----cccCCCccEEEeehhc
Confidence 8999999999999999999999999999999987766665443333 468888888754 2256899999998873
Q ss_pred cCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 157 SAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 157 ~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.+..++.-+...|++||.+++.
T Consensus 126 ------~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 ------PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp ------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred ------CHHHHHHHHHHhcCCCCEEEEE
Confidence 4567888899999999999875
No 353
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.31 E-value=6.2e-06 Score=78.52 Aligned_cols=102 Identities=24% Similarity=0.265 Sum_probs=75.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
..+..|||+|||+|.++...++.+ ..+|++++. .+|.+.|++..+.+ .++|.++.+.+.+.++ +++.|+|+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-----PEk~DviI 248 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIEL-----PEKVDVII 248 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC-cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccC-----chhccEEE
Confidence 678999999999999998888774 568999997 67889998876543 3678888888866554 36899999
Q ss_pred Eccc-ccCCChhHHHHHHHHHHhccCCCeEEEE
Q 008457 152 MVFV-LSAVSPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 152 ~~~v-l~~~~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
+--. ..-+. +.+....-..++.|||.|.++-
T Consensus 249 SEPMG~mL~N-ERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 249 SEPMGYMLVN-ERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred eccchhhhhh-HHHHHHHHHHHhhcCCCCcccC
Confidence 8322 11222 4445555667799999999863
No 354
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.30 E-value=6.9e-06 Score=80.28 Aligned_cols=117 Identities=18% Similarity=0.208 Sum_probs=86.1
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEe-cCCcccccC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVC-DLISDDLSR 140 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~-d~~~~~~~~ 140 (564)
+...+..+....+|..|||-=||||.++....-. |++++|+|++..|++-|+.+...-+ ....+... |+...
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l---- 258 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL---- 258 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC----
Confidence 3344445555688999999999999998877666 8999999999999999999876543 23333333 77543
Q ss_pred CCCCCceeEEEEccc------ccCCC-hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 141 QISPSSIDIVTMVFV------LSAVS-PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 141 ~~~~~~fD~V~~~~v------l~~~~-~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
|+++.++|.|++--- ..-.. .+-...+|+.+.++|++||++++..
T Consensus 259 pl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 259 PLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 467778999999221 11111 2457789999999999999998853
No 355
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.29 E-value=2.5e-06 Score=83.31 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=61.8
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
++.+.+.....++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++|+.. .++.+...|+.+.+ .
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-------~~v~~i~~D~~~~~-~ 101 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-------DNLTIIEGDALKVD-L 101 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-------CceEEEEChhhcCC-H
Confidence 44555544556788999999999998888887754 899999999999999987642 34666666665431 1
Q ss_pred hhhhhhcCCCccEEEEeceeeCCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPE 468 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~ 468 (564)
....+|.|+++ +.|+..
T Consensus 102 ------~~~~~~~vv~N-lPY~is 118 (272)
T PRK00274 102 ------SELQPLKVVAN-LPYNIT 118 (272)
T ss_pred ------HHcCcceEEEe-CCccch
Confidence 11115778766 456553
No 356
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.4e-06 Score=72.71 Aligned_cols=80 Identities=18% Similarity=0.352 Sum_probs=65.2
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.-.+++++|+|||.|-++...+.. ....|+|+|++|+++++++++......++.+.++|+.++.+ ..+.||.++.
T Consensus 46 diEgkkl~DLgcgcGmLs~a~sm~-~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~----~~g~fDtavi 120 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFSMP-KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLEL----KGGIFDTAVI 120 (185)
T ss_pred cccCcchhhhcCchhhhHHHhhcC-CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhc----cCCeEeeEEe
Confidence 357899999999999998555433 34579999999999999999988777888999999987654 4588999999
Q ss_pred ccccc
Q 008457 153 VFVLS 157 (564)
Q Consensus 153 ~~vl~ 157 (564)
+--+.
T Consensus 121 NppFG 125 (185)
T KOG3420|consen 121 NPPFG 125 (185)
T ss_pred cCCCC
Confidence 76543
No 357
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.26 E-value=4.1e-06 Score=82.20 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=65.4
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.+.+.......++.+|||||||+|.++..++.. +.+|+++|+|+.+++.+++++..++.. .++.+..-|..+.
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~---~~v~ii~~Dal~~--- 97 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLA---SKLEVIEGDALKT--- 97 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCC---CcEEEEECCHhhh---
Confidence 445555445567889999999999888877765 468999999999999999998876532 4566666555432
Q ss_pred hhhhhhcCCCccEEEEeceeeCCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPE 468 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~ 468 (564)
....||+|+ +++.|+..
T Consensus 98 ------~~~~~d~Vv-aNlPY~Is 114 (294)
T PTZ00338 98 ------EFPYFDVCV-ANVPYQIS 114 (294)
T ss_pred ------cccccCEEE-ecCCcccC
Confidence 123689877 46677654
No 358
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.26 E-value=4.7e-06 Score=80.80 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=62.5
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
+++.+.+.....++.+|||+|||+|.++..++.. +.+|+++|+++.+++.+++++.. . .++.+..-|..+.
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--~----~~v~ii~~D~~~~-- 87 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--A----GNVEIIEGDALKV-- 87 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--C----CCEEEEEeccccC--
Confidence 3455555555667889999999999888888876 56899999999999999988753 1 3566665554432
Q ss_pred chhhhhhcCCCccEEEEeceeeCC
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIP 467 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~ 467 (564)
....||.|+++-+ |+.
T Consensus 88 -------~~~~~d~Vv~NlP-y~i 103 (258)
T PRK14896 88 -------DLPEFNKVVSNLP-YQI 103 (258)
T ss_pred -------CchhceEEEEcCC-ccc
Confidence 1125798887654 554
No 359
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.24 E-value=1e-05 Score=78.91 Aligned_cols=140 Identities=15% Similarity=0.157 Sum_probs=93.4
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccCCCeeE-EEecCCcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVST-FVCDLISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~-~~~d~~~~~~~~~~ 142 (564)
.++.+.++...+.+|||+|||.|..+-......+ -.+++++|.|+.|++.++.........-.. ......... .
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----~ 98 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF----L 98 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc----c
Confidence 3444444446778999999999987766665544 347999999999999988765432211100 011111110 1
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHH
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
+-...|+|++.++|..++.+....+++++.+.+.+ .|++.+++.+... -...
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf--------------------------~~i~ 150 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF--------------------------RRIA 150 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH--------------------------HHHH
Confidence 22234999999999999877788899999888776 8888887754321 1356
Q ss_pred HHHHHHHhCCCcEE
Q 008457 223 FLTSLFKENGFDVE 236 (564)
Q Consensus 223 ~l~~~l~~aGf~~~ 236 (564)
++++.|.+.|+.++
T Consensus 151 ~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 151 EARDQLLEKGAHVV 164 (274)
T ss_pred HHHHHHhhCCCceE
Confidence 77888888888765
No 360
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.24 E-value=1.4e-05 Score=80.69 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=82.7
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCc-EEEEEeCChHHHHHHHhcccccC---CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDV-FVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~~iD~s~~~l~~a~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.+.+||++=|=||.++.+.+.. |+ +|+++|.|...++.|+++...++ .++.+++.|+...--...-...+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4999999999999999998887 56 89999999999999999876544 457899999854321111134589999
Q ss_pred EEcc-ccc------CCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 151 TMVF-VLS------AVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 151 ~~~~-vl~------~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++-= .+- +--..+...++..+.++|+|||.+++++
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9911 111 1113567788999999999999999864
No 361
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.24 E-value=7.4e-06 Score=76.92 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=60.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHH-HHhcccccCCCeeEEEecCCc---ccccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL-VMTHKDFTETRVSTFVCDLIS---DDLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~-a~~~~~~~~~~i~~~~~d~~~---~~~~~~~~~~~fD~ 149 (564)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+++.|+.. .++... -+.+...++.. ++.. ..-..+|+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~~----v~~~~~~ni~~~~~~~~~--~d~~~~Dv 146 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDER----VKVLERTNIRYVTPADIF--PDFATFDV 146 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCCC----eeEeecCCcccCCHhHcC--CCceeeeE
Confidence 467899999999999999999873 4589999999988765 333321 01122333331 1111 11135676
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+++... ..+..+.+.|+| |.+++.
T Consensus 147 sfiS~~----------~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 147 SFISLI----------SILPELDLLLNP-NDLTLL 170 (228)
T ss_pred EEeehH----------hHHHHHHHHhCc-CeEEEE
Confidence 665332 257789999999 776654
No 362
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.24 E-value=2.6e-06 Score=78.16 Aligned_cols=97 Identities=22% Similarity=0.248 Sum_probs=66.7
Q ss_pred CCCCCeEEEeCCcccHHHHHHHh-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
..++..|||+.||.|.++..++. ..++.|++.|++|.+++.+++|+.+|++. +.+.+...|..+. ...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~---~~i~~~~~D~~~~--------~~~ 167 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE---NRIEVINGDAREF--------LPE 167 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T---TTEEEEES-GGG-----------T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC---CeEEEEcCCHHHh--------cCc
Confidence 34788999999999999888876 34678999999999999999999999885 5677776664322 125
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..||-|++.- +.....++..+..++ +++|
T Consensus 168 ~~~drvim~l----p~~~~~fl~~~~~~~-~~~g 196 (200)
T PF02475_consen 168 GKFDRVIMNL----PESSLEFLDAALSLL-KEGG 196 (200)
T ss_dssp T-EEEEEE------TSSGGGGHHHHHHHE-EEEE
T ss_pred cccCEEEECC----hHHHHHHHHHHHHHh-cCCc
Confidence 6899998643 333446777788888 7655
No 363
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.24 E-value=7.5e-07 Score=78.93 Aligned_cols=104 Identities=18% Similarity=0.304 Sum_probs=75.3
Q ss_pred HHHhhhccC------CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc
Q 008457 65 KEWGRYFSG------AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138 (564)
Q Consensus 65 ~~~~~~l~~------~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~ 138 (564)
..|.+++.. ..+.++||+|+|.|..+..++..+ -+|++.++|..|+.+.+.+.- ++-- ..+..+
T Consensus 96 ~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk~y----nVl~-~~ew~~--- 165 (288)
T KOG3987|consen 96 EQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKKNY----NVLT-EIEWLQ--- 165 (288)
T ss_pred HHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhcCC----ceee-ehhhhh---
Confidence 445555432 345899999999999999888773 469999999999988876532 1110 111111
Q ss_pred cCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCC-CeEEEEE
Q 008457 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKP-TGYVLFR 184 (564)
Q Consensus 139 ~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lkp-gG~lii~ 184 (564)
.+-+||+|.|..+|.-- .++.++|+.+..+|+| .|.+++.
T Consensus 166 ----t~~k~dli~clNlLDRc--~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 166 ----TDVKLDLILCLNLLDRC--FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ----cCceeehHHHHHHHHhh--cChHHHHHHHHHHhccCCCcEEEE
Confidence 23479999999888633 3788999999999999 7888774
No 364
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.23 E-value=3.5e-06 Score=82.00 Aligned_cols=93 Identities=11% Similarity=-0.035 Sum_probs=71.4
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR 140 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~ 140 (564)
.+..++.+.+...++..+||.+||.|.++..+++..+ .++|+|+|.++.+++.|+++... ..++.+++.++.......
T Consensus 6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHH
Confidence 3456667777777889999999999999999999874 68999999999999999988765 568899998886532111
Q ss_pred CCCCCceeEEEEccc
Q 008457 141 QISPSSIDIVTMVFV 155 (564)
Q Consensus 141 ~~~~~~fD~V~~~~v 155 (564)
+-.-.++|.|++...
T Consensus 85 ~~~~~~vDgIl~DLG 99 (296)
T PRK00050 85 AEGLGKVDGILLDLG 99 (296)
T ss_pred HcCCCccCEEEECCC
Confidence 101127898888553
No 365
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.23 E-value=1.3e-05 Score=72.87 Aligned_cols=104 Identities=20% Similarity=0.146 Sum_probs=73.4
Q ss_pred eEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc-hhhhhhcCCCcc
Q 008457 379 KVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI-EAIKEENNEGFE 456 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~-~~~~~~~~~~fD 456 (564)
+|||||||||--+..++.... -.-.-+|.++..+..++..+...+..-.... ..+|....... .........+||
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P---~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPP---LALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCC---eEeecCCCCCccccccccCCCCcc
Confidence 699999999988888777654 4788999999888888887777665321122 23333322110 000012356899
Q ss_pred EEEEeceeeC--CCChHHHHHHHHHHhhccCC
Q 008457 457 VILGTDVSYI--PEAILPLFATAKELTASSNK 486 (564)
Q Consensus 457 ~Ii~~d~~y~--~~~~~~l~~~~~~ll~~~~g 486 (564)
.|+++.+++- .+..+.|++.+.++| +++|
T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L-~~gG 135 (204)
T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLL-KPGG 135 (204)
T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhC-CCCC
Confidence 9999999876 568899999999999 9887
No 366
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=1.4e-05 Score=82.36 Aligned_cols=142 Identities=15% Similarity=0.071 Sum_probs=96.2
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
+..|..++.+.....++.+||||=||.|.++..++ +...+|+++|+++++++.+++|++.|+.. ++.+...+-.+
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i~----N~~f~~~~ae~ 352 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGID----NVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCCC----cEEEEeCCHHH
Confidence 45677777776666678899999999997777666 56779999999999999999999999984 36665443221
Q ss_pred CccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCe
Q 008457 441 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFR 520 (564)
Q Consensus 441 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~ 520 (564)
. ... ......+|+|| -|..--- .-+.+++.+.++- +...+|++...-. ..+-+..+.+.|.+
T Consensus 353 ~--~~~--~~~~~~~d~Vv-vDPPR~G-~~~~~lk~l~~~~----------p~~IvYVSCNP~T--laRDl~~L~~~gy~ 414 (432)
T COG2265 353 F--TPA--WWEGYKPDVVV-VDPPRAG-ADREVLKQLAKLK----------PKRIVYVSCNPAT--LARDLAILASTGYE 414 (432)
T ss_pred H--hhh--ccccCCCCEEE-ECCCCCC-CCHHHHHHHHhcC----------CCcEEEEeCCHHH--HHHHHHHHHhCCeE
Confidence 1 100 01235789887 3433222 2346666666655 2337777755443 33457777788988
Q ss_pred EEEEc
Q 008457 521 LVDKW 525 (564)
Q Consensus 521 ~~~~~ 525 (564)
++++-
T Consensus 415 i~~v~ 419 (432)
T COG2265 415 IERVQ 419 (432)
T ss_pred EEEEE
Confidence 87774
No 367
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.20 E-value=7.6e-06 Score=84.89 Aligned_cols=111 Identities=18% Similarity=0.144 Sum_probs=76.2
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-----CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-----ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-----~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
|.+.........+++.|+++|||+|.|+..++..+ +.+|++++.|+.++..+++.+..|+.. ++|.+..-|-
T Consensus 174 l~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~---~~V~vi~~d~ 250 (448)
T PF05185_consen 174 LKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG---DKVTVIHGDM 250 (448)
T ss_dssp HHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT---TTEEEEES-T
T ss_pred HHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC---CeEEEEeCcc
Confidence 44555444333357899999999998887666543 569999999999998888877888875 6687776554
Q ss_pred CCCccchhhhhhcCCCccEEEEece--eeCCCChHHHHHHHHHHhhccCC
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDV--SYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~--~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.+-. .+.++|+||+=-+ +-..+..+..+....++| +|+|
T Consensus 251 r~v~--------lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfL-kp~G 291 (448)
T PF05185_consen 251 REVE--------LPEKVDIIVSELLGSFGDNELSPECLDAADRFL-KPDG 291 (448)
T ss_dssp TTSC--------HSS-EEEEEE---BTTBTTTSHHHHHHHGGGGE-EEEE
T ss_pred cCCC--------CCCceeEEEEeccCCccccccCHHHHHHHHhhc-CCCC
Confidence 4331 2348999984322 234567788899999999 9877
No 368
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.18 E-value=3.4e-05 Score=76.14 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=71.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
.|.+|||+-||.|.+++.++..+..+|+++|+||.+++++++|+.+|+.. +.+.....|-..- . . ..+.+
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~---~~v~~i~gD~rev-----~-~-~~~~a 257 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE---GRVEPILGDAREV-----A-P-ELGVA 257 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc---ceeeEEeccHHHh-----h-h-ccccC
Confidence 58899999999999999988888777999999999999999999999985 3455554432211 0 1 11679
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
|-|++.-+. .-..++.....++ +++|
T Consensus 258 DrIim~~p~----~a~~fl~~A~~~~-k~~g 283 (341)
T COG2520 258 DRIIMGLPK----SAHEFLPLALELL-KDGG 283 (341)
T ss_pred CEEEeCCCC----cchhhHHHHHHHh-hcCc
Confidence 999865433 3455667777777 6665
No 369
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.18 E-value=1.5e-05 Score=75.51 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=89.5
Q ss_pred CCCeEEEEcCCc--cccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCC-------CC
Q 008457 75 GRKDVLEVGCGA--GNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQ-------IS 143 (564)
Q Consensus 75 ~~~~VLDiGcG~--G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~-------~~ 143 (564)
.-...||||||- -..+...++. .|+.+|+.+|.+|-.+.-++....... ....++++|+...+--+. +.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 667899999993 4556666655 789999999999999988887765332 237899999875432111 11
Q ss_pred CCceeEEEEcccccCCCh-hHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHH
Q 008457 144 PSSIDIVTMVFVLSAVSP-EKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~-~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
-..-=.++...+|||+++ +++..++..++..|.||.+|+++-........ .. .... ..+. ..+...++-+.+
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~-~~-~~~~----~~~~-~~~~~~~~Rs~~ 220 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPE-RA-EALE----AVYA-QAGSPGRPRSRE 220 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHH-HH-HHHH----HHHH-HCCS----B-HH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHH-HH-HHHH----HHHH-cCCCCceecCHH
Confidence 122236777889999985 78999999999999999999998665542211 10 0000 0111 123333455899
Q ss_pred HHHHHHHhCCCcEEEeeeee
Q 008457 223 FLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~~~ 242 (564)
++..+|. ||++++=+...
T Consensus 221 ei~~~f~--g~elvePGlv~ 238 (267)
T PF04672_consen 221 EIAAFFD--GLELVEPGLVP 238 (267)
T ss_dssp HHHHCCT--TSEE-TT-SEE
T ss_pred HHHHHcC--CCccCCCceec
Confidence 9999997 89988754443
No 370
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.17 E-value=9.5e-06 Score=78.53 Aligned_cols=106 Identities=18% Similarity=0.224 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-----CCeeEEEecCCcccccCCCCCCceeE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-----TRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
...+||-||.|.|..++.+++..+-.+++.+|+++..++.+++.+.... .+++.+..|....-- . ...+||+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~--~-~~~~fDv 152 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR--D-CEEKFDV 152 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH--h-CCCcCCE
Confidence 3379999999999999999999777899999999999999999865432 677888888753221 1 2238999
Q ss_pred EEEcccccCCCh---hHHHHHHHHHHhccCCCeEEEEE
Q 008457 150 VTMVFVLSAVSP---EKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 150 V~~~~vl~~~~~---~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
|++-..=. ..+ ---..+++.+++.|+++|+++..
T Consensus 153 Ii~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99944322 110 01267999999999999999985
No 371
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.16 E-value=8.5e-06 Score=78.38 Aligned_cols=107 Identities=12% Similarity=0.062 Sum_probs=81.0
Q ss_pred HHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 366 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 366 ~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
..+.........++|||||+|+|.++..++...+ .+++..|+ |++++.+++ .+++.+...|+-+.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f~~--- 155 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFFDP--- 155 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TTTC---
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHHhh---
Confidence 4444555555677999999999988887777654 49999999 999998888 27889988887622
Q ss_pred hhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccC--CCCCCCCCcEEEEEEee
Q 008457 445 EAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSN--KSLREDQQPAFILCHIF 502 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~--g~~~~~~~~~~~~~~~~ 502 (564)
++. +|+|+.+.++++. +....+++.+...| +|+ | ++++.-..
T Consensus 156 -----~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al-~pg~~g--------~llI~e~~ 201 (241)
T PF00891_consen 156 -----LPV--ADVYLLRHVLHDWSDEDCVKILRNAAAAL-KPGKDG--------RLLIIEMV 201 (241)
T ss_dssp -----CSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHS-EECTTE--------EEEEEEEE
T ss_pred -----hcc--ccceeeehhhhhcchHHHHHHHHHHHHHh-CCCCCC--------eEEEEeec
Confidence 233 9999999999774 46778899999999 986 6 77776665
No 372
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.15 E-value=8e-06 Score=81.33 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=82.0
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCC--CCCceEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP--FLAKLIT 433 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~--~~~~i~~ 433 (564)
--|--+.++..|+.......++.+|||||||-|+-..--......+++++|++++.|+.+++....-.... ...+..+
T Consensus 42 NNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f 121 (331)
T PF03291_consen 42 NNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDF 121 (331)
T ss_dssp HHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECC
T ss_pred hHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccc
Confidence 45878888888876543333788999999998875555555567899999999999999988773211100 0011111
Q ss_pred EE-eecCCCccchhhh-hhcC--CCccEEEEeceeeC----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 434 KR-LEWGNRDHIEAIK-EENN--EGFEVILGTDVSYI----PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 434 ~~-l~w~~~~~~~~~~-~~~~--~~fD~Ii~~d~~y~----~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
.. +-..+.. ...+. .+.+ .+||+|=+.=++++ .+....+++.+..+| +||| .|+.+.+.-
T Consensus 122 ~a~f~~~D~f-~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~L-k~GG--------~FIgT~~d~ 189 (331)
T PF03291_consen 122 IAEFIAADCF-SESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLL-KPGG--------YFIGTTPDS 189 (331)
T ss_dssp EEEEEESTTC-CSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTE-EEEE--------EEEEEEE-H
T ss_pred hhheeccccc-cchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhc-CCCC--------EEEEEecCH
Confidence 11 1122111 11111 1333 49999876654433 345667999999999 9988 888776653
No 373
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.14 E-value=9e-06 Score=75.66 Aligned_cols=90 Identities=22% Similarity=0.200 Sum_probs=72.6
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccccc
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLS 139 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~ 139 (564)
.+...+.+.....++..|||||.|||.++..|++. +.+|+++++++.|+....++....+ ..+++..+|+...++
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~- 121 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL- 121 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-
Confidence 34445555555689999999999999999999999 7899999999999999988876555 788999999987654
Q ss_pred CCCCCCceeEEEEcccccCC
Q 008457 140 RQISPSSIDIVTMVFVLSAV 159 (564)
Q Consensus 140 ~~~~~~~fD~V~~~~vl~~~ 159 (564)
..||.++++.-..-.
T Consensus 122 -----P~fd~cVsNlPyqIS 136 (315)
T KOG0820|consen 122 -----PRFDGCVSNLPYQIS 136 (315)
T ss_pred -----cccceeeccCCcccc
Confidence 368999996654433
No 374
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.13 E-value=1.5e-05 Score=72.94 Aligned_cols=113 Identities=12% Similarity=0.269 Sum_probs=73.5
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCC-------------CCceEE-----
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPF-------------LAKLIT----- 433 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~-------------~~~i~~----- 433 (564)
+.+.++.+||+||-+|.++..++.. ++..|+++|+++..|+.|++|+..-..... ...|..
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 4568889999999999777777765 467899999999999999999875321100 000000
Q ss_pred --EEee-----cCCCc----cchhhhhhcCCCccEEEEecee------eCCCChHHHHHHHHHHhhccCC
Q 008457 434 --KRLE-----WGNRD----HIEAIKEENNEGFEVILGTDVS------YIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 434 --~~l~-----w~~~~----~~~~~~~~~~~~fD~Ii~~d~~------y~~~~~~~l~~~~~~ll~~~~g 486 (564)
...+ |.... +...+.......||+|+|--+- ++.+-+-.+++.+.++| .|+|
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll-~pgG 203 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLL-HPGG 203 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhh-CcCc
Confidence 0000 10000 0011113345689999976442 23557889999999999 9988
No 375
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.13 E-value=5.7e-05 Score=72.34 Aligned_cols=110 Identities=20% Similarity=0.202 Sum_probs=78.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----cCCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
+.+.+||-||.|.|..++.+++..+..+++++|+++.+++.|++.+.. ...+++++..|....-. .....+||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~--~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK--ETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH--TSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH--hccCCccc
Confidence 578999999999999999998775567899999999999999987542 24688999998754211 11222899
Q ss_pred EEEEcccccCCChh--HHHHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSPE--KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~~--~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|+.-..-...+.. --..+++.+++.|+|||++++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99984332211111 13579999999999999999864
No 376
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.13 E-value=1.3e-05 Score=73.49 Aligned_cols=107 Identities=8% Similarity=0.039 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCC-ceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS-SIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~-~fD~V 150 (564)
..+.+|||++||+|.++..++.++. .+|+++|.++.+++.++++....+ .++++++.|+... +....... .||+|
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~-l~~~~~~~~~~dvv 125 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA-LKFLAKKPTFDNVI 125 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH-HHHhhccCCCceEE
Confidence 3578999999999999999998842 489999999999999988765433 3678899998432 11001122 47877
Q ss_pred EEcccccCCChhHHHHHHHHH--HhccCCCeEEEEEe
Q 008457 151 TMVFVLSAVSPEKMSLVLQNI--KKVLKPTGYVLFRD 185 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~--~r~LkpgG~lii~~ 185 (564)
+..=-+.. .....++..+ ..+|+++|.+++..
T Consensus 126 ~~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 126 YLDPPFFN---GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 77322221 1223344444 35788999887753
No 377
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=9e-06 Score=74.48 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=69.6
Q ss_pred eEEEeCCcccHHHHHHHhcCC---CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 379 KVLELGCGCGGICSMVAAGSA---DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~~---~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
+|||+|||.|-...-+++... -+|.+.|.+|.+++..++|...+. .++.+..-|...++ ...+...+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-----~~~~afv~Dlt~~~---~~~~~~~~sv 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-----SRVEAFVWDLTSPS---LKEPPEEGSV 145 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-----hhhcccceeccchh---ccCCCCcCcc
Confidence 799999999944444444332 389999999999999999877654 23444444444332 1123567899
Q ss_pred cEEEEeceee--CCCChHHHHHHHHHHhhccCC
Q 008457 456 EVILGTDVSY--IPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~d~~y--~~~~~~~l~~~~~~ll~~~~g 486 (564)
|+|++-=++- +++.....++.+.++| +|+|
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~ll-KPGG 177 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLL-KPGG 177 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHh-CCCc
Confidence 9998543332 3667888999999999 9998
No 378
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.10 E-value=3.6e-05 Score=67.81 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=73.5
Q ss_pred CeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC-cc
Q 008457 378 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG-FE 456 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~-fD 456 (564)
..|+|+.||.|+-++.++.. ..+|+++|+++.-++.++.|++.-+.. ++|.+..-||.+. +..+.... +|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~---~~I~~i~gD~~~~-----~~~~~~~~~~D 71 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVA---DNIDFICGDFFEL-----LKRLKSNKIFD 71 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-G---GGEEEEES-HHHH-----GGGB------S
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEeCCHHHH-----Hhhcccccccc
Confidence 36999999999888888775 568999999999999999999998864 6788888888642 11122222 89
Q ss_pred EEEEece----------eeCC------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHH----
Q 008457 457 VILGTDV----------SYIP------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ---- 516 (564)
Q Consensus 457 ~Ii~~d~----------~y~~------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---- 516 (564)
+|+++.. .|+- -....+++...++. . . ++.+-+|+.+...+.+.+.+
T Consensus 72 ~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t-~-----------n-v~l~LPRn~dl~ql~~~~~~l~~~ 138 (163)
T PF09445_consen 72 VVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT-P-----------N-VVLFLPRNSDLNQLSQLTRELFGP 138 (163)
T ss_dssp EEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S-------------EEEEEETTB-HHHHHHT----T-T
T ss_pred EEEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhhC-C-----------C-EEEEeCCCCCHHHHHHHhccccCC
Confidence 9987642 2322 14555666655555 2 2 23345787777666655322
Q ss_pred -cCCeEEEEc
Q 008457 517 -CGFRLVDKW 525 (564)
Q Consensus 517 -~g~~~~~~~ 525 (564)
..+++++.+
T Consensus 139 ~~~~~v~~~~ 148 (163)
T PF09445_consen 139 SKKCEVEQNY 148 (163)
T ss_dssp TEEEEEEEEE
T ss_pred CCeEEEEEeh
Confidence 235555554
No 379
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=4.5e-05 Score=71.09 Aligned_cols=107 Identities=19% Similarity=0.187 Sum_probs=85.2
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccc--cCCCeeEEEecCCcccccCCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
...+...|+.+|++-|+|+|.++..+++. .|..+++.+|+.....+.|++.++. .++++++...|+....+ ....
T Consensus 98 ~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF--~~ks 175 (314)
T KOG2915|consen 98 LSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF--LIKS 175 (314)
T ss_pred HHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc--cccc
Confidence 34455689999999999999999999988 6788999999999888888887654 45889999999987766 3346
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEE
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
..+|.|+. -+| .+..++..++..||.+|.-++
T Consensus 176 ~~aDaVFL-----DlP--aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 176 LKADAVFL-----DLP--APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cccceEEE-----cCC--ChhhhhhhhHHHhhhcCceEE
Confidence 78999988 333 455678888889998875443
No 380
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=98.08 E-value=2e-06 Score=81.64 Aligned_cols=132 Identities=26% Similarity=0.256 Sum_probs=87.0
Q ss_pred ccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCC
Q 008457 348 HTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF 427 (564)
Q Consensus 348 ~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~ 427 (564)
.....+|..+|+++..|.+++.+++....+.+|.++|||++ +...++++...-|...|-...+.-++..+...+.....
T Consensus 62 ~~~~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~-~~~~~~a~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (262)
T KOG2497|consen 62 FLLARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIA-LKHVLAARVPDCVVTLDSLRCAGLLLEEIILLSRDLSL 140 (262)
T ss_pred HHHHHhccccchHHHHHHHHHhhCcccccccchHhhccCHH-HHHHHHHhcccceecCCccCcHHHHHHHHHhccccccc
Confidence 56688999999999999999999999889999999999998 44445555554455555444444444444444333222
Q ss_pred CCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhcc
Q 008457 428 LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASS 484 (564)
Q Consensus 428 ~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~ 484 (564)
...-+...+.|....... ......+|+|+++|++|. ....+++.++..+|...
T Consensus 141 ~~~~~~~~~~~~~~~~~~---~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~~ 193 (262)
T KOG2497|consen 141 EVRDSAPELNQAFLESKP---ETSQEFTDLLGGADVIYD-TELRHLLETLMTLLLRW 193 (262)
T ss_pred cccccchhHHHHHHhcCc---ccccchhhheeccCeeeh-hhhhHHHHHHHHHHHhc
Confidence 222333333332211111 112335999999999999 88999999999987333
No 381
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.07 E-value=0.00014 Score=67.54 Aligned_cols=154 Identities=19% Similarity=0.205 Sum_probs=97.2
Q ss_pred CCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHh-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCC
Q 008457 351 RSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLA 429 (564)
Q Consensus 351 ~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~ 429 (564)
-+.|.++++.++.-+.|+.++..+ .|++||=+|=.- +.++.++. ..+++|+.+|+++.+++.+++.+...++.
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~gdL-~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~---- 93 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAERGDL-EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP---- 93 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------
T ss_pred cccccccHHHHHHHHHHHHhcCcc-cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc----
Confidence 356788999999999999998765 999999999775 24444443 34679999999999999999999988862
Q ss_pred ceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh--
Q 008457 430 KLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-- 507 (564)
Q Consensus 430 ~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~-- 507 (564)
+++...|..+. .. +...++||+++ .|..|..+.+..++..--..| +..| ...|+++..+..+.
T Consensus 94 -i~~~~~DlR~~-LP----~~~~~~fD~f~-TDPPyT~~G~~LFlsRgi~~L-k~~g-------~~gy~~~~~~~~s~~~ 158 (243)
T PF01861_consen 94 -IEAVHYDLRDP-LP----EELRGKFDVFF-TDPPYTPEGLKLFLSRGIEAL-KGEG-------CAGYFGFTHKEASPDK 158 (243)
T ss_dssp -EEEE---TTS--------TTTSS-BSEEE-E---SSHHHHHHHHHHHHHTB--STT--------EEEEEE-TTT--HHH
T ss_pred -eEEEEeccccc-CC----HHHhcCCCEEE-eCCCCCHHHHHHHHHHHHHHh-CCCC-------ceEEEEEecCcCcHHH
Confidence 78888877654 11 22346999876 899999999999999998999 6533 25677777765433
Q ss_pred -hHHHHHHHHcCCeEEEEc
Q 008457 508 -PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 508 -~~~~~~~~~~g~~~~~~~ 525 (564)
..+.+.+.+.||-+..+.
T Consensus 159 ~~~~Q~~l~~~gl~i~dii 177 (243)
T PF01861_consen 159 WLEVQRFLLEMGLVITDII 177 (243)
T ss_dssp HHHHHHHHHTS--EEEEEE
T ss_pred HHHHHHHHHHCCcCHHHHH
Confidence 246667778999999985
No 382
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.06 E-value=2.8e-05 Score=71.09 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=84.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
.-.++||.|||.|-++--++.....+|-++|..+..++.+++.+..... ....+... .++...+ ...+|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~----~v~~~~~~------gLQ~f~P-~~~~Y 123 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP----RVGEFYCV------GLQDFTP-EEGKY 123 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC----CEEEEEES-------GGG-----TT-E
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC----CcceEEec------CHhhccC-CCCcE
Confidence 5669999999999999888777889999999999999999976554221 11112111 1111111 23599
Q ss_pred cEEEEeceeeC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC--------------ChhHHHHHHHHcCC
Q 008457 456 EVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV--------------DEPSMLSAATQCGF 519 (564)
Q Consensus 456 D~Ii~~d~~y~--~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~--------------~~~~~~~~~~~~g~ 519 (564)
|+|+...|+-+ .+++-.+++.++..| +|+| .+++=-..-.. +...|.+.++++|+
T Consensus 124 DlIW~QW~lghLTD~dlv~fL~RCk~~L-~~~G--------~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl 194 (218)
T PF05891_consen 124 DLIWIQWCLGHLTDEDLVAFLKRCKQAL-KPNG--------VIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGL 194 (218)
T ss_dssp EEEEEES-GGGS-HHHHHHHHHHHHHHE-EEEE--------EEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-
T ss_pred eEEEehHhhccCCHHHHHHHHHHHHHhC-cCCc--------EEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCC
Confidence 99999999866 557888999999999 9987 55543222111 12468888899999
Q ss_pred eEEEEc
Q 008457 520 RLVDKW 525 (564)
Q Consensus 520 ~~~~~~ 525 (564)
++.+.-
T Consensus 195 ~~v~~~ 200 (218)
T PF05891_consen 195 RLVKEE 200 (218)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999864
No 383
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.04 E-value=0.00019 Score=64.30 Aligned_cols=106 Identities=25% Similarity=0.411 Sum_probs=73.6
Q ss_pred EEEEcCCccccHHHHHHhCCC-cEEEEEeCChHHHHHHHhcccccCCC-eeEEEecCCcccccCCCCC-CceeEEEEccc
Q 008457 79 VLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTETR-VSTFVCDLISDDLSRQISP-SSIDIVTMVFV 155 (564)
Q Consensus 79 VLDiGcG~G~~~~~l~~~~~~-~~v~~iD~s~~~l~~a~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~-~~fD~V~~~~v 155 (564)
++|+|||+|... .+....+. ..++++|+++.++..++......... +.+...+.... ..++.. ..||++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG--VLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccC--CCCCCCCCceeEEeeeee
Confidence 999999999976 34443222 47999999999998866554321111 56777776542 124455 48999944444
Q ss_pred ccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCc
Q 008457 156 LSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD 190 (564)
Q Consensus 156 l~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~ 190 (564)
+++.. ....+.++.+.|+|+|.+++.......
T Consensus 129 ~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 129 LHLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hhcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 45553 788999999999999999998766543
No 384
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.03 E-value=3.1e-05 Score=73.73 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=71.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++|||||+++| .+.+.++. ...+|+.+|.+++..+.+++|++..++. ++|.+..-+. .+.+..+.
T Consensus 78 ~~ak~iLEiGT~~G-ySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~---~~I~~~~G~a-----~e~L~~l~ 148 (247)
T PLN02589 78 INAKNTMEIGVYTG-YSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA---HKIDFREGPA-----LPVLDQMI 148 (247)
T ss_pred hCCCEEEEEeChhh-HHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC---CceEEEeccH-----HHHHHHHH
Confidence 36679999999999 55444433 2458999999999999999999998875 5676654432 22332321
Q ss_pred -----CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 452 -----NEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 452 -----~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.++||+|+ .|. +...+...++.+.++| +++|
T Consensus 149 ~~~~~~~~fD~iF-iDa--dK~~Y~~y~~~~l~ll-~~GG 184 (247)
T PLN02589 149 EDGKYHGTFDFIF-VDA--DKDNYINYHKRLIDLV-KVGG 184 (247)
T ss_pred hccccCCcccEEE-ecC--CHHHhHHHHHHHHHhc-CCCe
Confidence 36899987 332 3666788888888999 9887
No 385
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=0.00011 Score=67.86 Aligned_cols=133 Identities=21% Similarity=0.146 Sum_probs=92.6
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc-eeEEEEc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS-IDIVTMV 153 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~-fD~V~~~ 153 (564)
+.+++|||+|.|.-+..|+-.+|+.+|+.+|....-+...+.-....+ .|+++++..+.+... ... ||+|++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-----~~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-----EKKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-----ccccCcEEEee
Confidence 689999999999999999988899999999999877666655544333 568888888754321 122 9999997
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.+ ..+..++.-+..++|+||.+++.-..... . -..+........|+
T Consensus 143 Av------a~L~~l~e~~~pllk~~g~~~~~k~~~~~------------------------~----e~~e~~~a~~~~~~ 188 (215)
T COG0357 143 AV------ASLNVLLELCLPLLKVGGGFLAYKGLAGK------------------------D----ELPEAEKAILPLGG 188 (215)
T ss_pred hc------cchHHHHHHHHHhcccCCcchhhhHHhhh------------------------h----hHHHHHHHHHhhcC
Confidence 76 23455777788999999987652111000 0 13455566667788
Q ss_pred cEEEeeeeeccccc
Q 008457 234 DVEELGLCCKQVEN 247 (564)
Q Consensus 234 ~~~~~~~~~~~~~~ 247 (564)
.+..+.....+...
T Consensus 189 ~~~~~~~~~~p~~~ 202 (215)
T COG0357 189 QVEKVFSLTVPELD 202 (215)
T ss_pred cEEEEEEeecCCCC
Confidence 88776665545443
No 386
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.01 E-value=9.1e-05 Score=71.67 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=50.5
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
++.+.+.....++.+|||+|||+|.++..++..+ .+|+++|.++.+++.++.++.. ..++.+..-|..
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~ 85 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDAL 85 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchh
Confidence 4455544455578899999999998888887766 4699999999999999987643 134555555544
No 387
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.00 E-value=2.3e-05 Score=72.02 Aligned_cols=98 Identities=23% Similarity=0.230 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++..|+|+-||.|.++..+++..++..|+++|++|.+++.+++..... ...+....+|..... +.+.||.|+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~-----~~~~~drvi 174 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL-----PEGKFDRVI 174 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------TT-EEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc-----CccccCEEE
Confidence 6789999999999999999999666889999999999999998876433 356788889985421 368899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEE
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVL 182 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~li 182 (564)
++.--. ...+|..+.+++++||++-
T Consensus 175 m~lp~~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 175 MNLPES------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp E--TSS------GGGGHHHHHHHEEEEEEEE
T ss_pred ECChHH------HHHHHHHHHHHhcCCcEEE
Confidence 855311 2247888999999998863
No 388
>PRK00536 speE spermidine synthase; Provisional
Probab=98.00 E-value=4.1e-05 Score=73.25 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=73.6
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----cCCCeeEEEecCCcccccCCCCCCc
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
....+.+||=||.|.|..++.+++. + .+|+.+|+++.+++.+++.... ...+++.+.. +. .-..++
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~------~~~~~~ 139 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL------DLDIKK 139 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh------hccCCc
Confidence 3467899999999999999999987 3 4999999999999999995432 2345655531 11 112368
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
||+|++-.. ....+++.+++.|+|||.++..
T Consensus 140 fDVIIvDs~-------~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 140 YDLIICLQE-------PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CCEEEEcCC-------CChHHHHHHHHhcCCCcEEEEC
Confidence 999998542 1246889999999999999874
No 389
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=3.1e-05 Score=73.42 Aligned_cols=86 Identities=16% Similarity=0.109 Sum_probs=68.5
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCC
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 143 (564)
...+.+.....++..|||||+|.|.+|..|++. +.+|+++++++.++...++... ...+++.+.+|+...+++.-.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l~- 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDFPSLA- 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcchhhc-
Confidence 345555666677899999999999999999999 6789999999999999998875 457899999999776552110
Q ss_pred CCceeEEEEccc
Q 008457 144 PSSIDIVTMVFV 155 (564)
Q Consensus 144 ~~~fD~V~~~~v 155 (564)
.++.|++|--
T Consensus 95 --~~~~vVaNlP 104 (259)
T COG0030 95 --QPYKVVANLP 104 (259)
T ss_pred --CCCEEEEcCC
Confidence 5677877654
No 390
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.99 E-value=7.5e-06 Score=82.05 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=86.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++..++|+|||.|.....+... ..++++|+|.++..+.++........ ....++.+|+.. .|++++.||.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~----~~fedn~fd~v~ 183 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGK----MPFEDNTFDGVR 183 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhc----CCCCccccCcEE
Confidence 56678999999999998888765 36889999999998888876543222 233345666643 267999999999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+..+.+|.+ +...++++++|+++|||.++..++.
T Consensus 184 ~ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 184 FLEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred EEeecccCC--cHHHHHHHHhcccCCCceEEeHHHH
Confidence 999999996 7889999999999999999997654
No 391
>PLN02823 spermine synthase
Probab=97.96 E-value=0.00013 Score=72.84 Aligned_cols=138 Identities=20% Similarity=0.198 Sum_probs=85.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..++||.||+|.|+++..++.. ...+|+++|+++++++.+++++..+.......++++..-| ...-+ ....++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~D-----a~~~L-~~~~~~ 176 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIND-----ARAEL-EKRDEK 176 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEECh-----hHHHH-hhCCCC
Confidence 4579999999999888777764 4579999999999999999987665322222455555332 12222 223568
Q ss_pred ccEEEEeceeeCCC--------ChHHHHH-HHHHHhhccCCCCCCCCCcEEEEEEeecc---CC--hhHHHHHHHHcCCe
Q 008457 455 FEVILGTDVSYIPE--------AILPLFA-TAKELTASSNKSLREDQQPAFILCHIFRQ---VD--EPSMLSAATQCGFR 520 (564)
Q Consensus 455 fD~Ii~~d~~y~~~--------~~~~l~~-~~~~ll~~~~g~~~~~~~~~~~~~~~~r~---~~--~~~~~~~~~~~g~~ 520 (564)
||+|+ .|+ .++. .-..+++ .+++.| +|+| ++++-..... .. .......+++ -|.
T Consensus 177 yDvIi-~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L-~p~G--------vlv~q~~s~~~~~~~~~~~~i~~tl~~-vF~ 244 (336)
T PLN02823 177 FDVII-GDL-ADPVEGGPCYQLYTKSFYERIVKPKL-NPGG--------IFVTQAGPAGILTHKEVFSSIYNTLRQ-VFK 244 (336)
T ss_pred ccEEE-ecC-CCccccCcchhhccHHHHHHHHHHhc-CCCc--------EEEEeccCcchhccHHHHHHHHHHHHH-hCC
Confidence 99998 564 2321 1235666 889999 9988 6655433211 11 1244555655 355
Q ss_pred EEEEcCCCCCC
Q 008457 521 LVDKWPSKNSA 531 (564)
Q Consensus 521 ~~~~~~~~~~~ 531 (564)
....+....|+
T Consensus 245 ~v~~y~~~vPs 255 (336)
T PLN02823 245 YVVPYTAHVPS 255 (336)
T ss_pred CEEEEEeecCC
Confidence 55555554443
No 392
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.96 E-value=2.3e-05 Score=79.80 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
++.+|||++||+|..+..++...+..+|+++|+++.+++.++++....+ .++.+.+.|+... +. ..+.||+|++.
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~-l~---~~~~fD~V~lD 132 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL-LH---EERKFDVVDID 132 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH-Hh---hcCCCCEEEEC
Confidence 3468999999999999999887544589999999999999998865433 3456788887432 11 04579999984
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
- . - ....++....+.+++||.++++
T Consensus 133 P-~-G----s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 133 P-F-G----SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C-C-C----CcHHHHHHHHHHhcCCCEEEEE
Confidence 3 2 1 2346788877888999999997
No 393
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.96 E-value=7.2e-05 Score=78.00 Aligned_cols=115 Identities=16% Similarity=0.218 Sum_probs=83.4
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeE
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
.+.++.+|||++||.|.=+.+++.... ...+++.|+++..+..++++....+ .++.+...|..... ....+.||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~---~~~~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG---AALPETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh---hhchhhcCe
Confidence 557899999999999999999998743 4689999999999999988876544 45677777764321 112457999
Q ss_pred EEE----cc--cccCC-------Chh-------HHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 150 VTM----VF--VLSAV-------SPE-------KMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 150 V~~----~~--vl~~~-------~~~-------~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
|++ .. ++..- +.+ ....+|..+.++|||||+|+.++=...
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 995 21 22221 111 236789999999999999988754443
No 394
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.96 E-value=5.6e-06 Score=75.84 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCccc----ccCCCC--CCce
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD----LSRQIS--PSSI 147 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~----~~~~~~--~~~f 147 (564)
++.+|||+||++|.|+..++++. +..+|+|+|+.+.. ....+.+.++|+.... +..-+. .+++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----------PLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc----------cccceeeeecccchhhHHHhhhhhccccccCc
Confidence 56999999999999999999885 46899999998751 1123444445543221 111112 2689
Q ss_pred eEEEEcccccCCC---------hhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 148 DIVTMVFVLSAVS---------PEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 148 D~V~~~~vl~~~~---------~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
|+|+|-.+..... .+.....+.-+...|+|||.+++..+.
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 9999966322211 122334445555779999999987655
No 395
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.93 E-value=6.7e-05 Score=68.26 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=76.8
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcE---------EEEEeCChHHHHHHHhcccccC--CCeeEEEec
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVF---------VYACDFSPRAVNLVMTHKDFTE--TRVSTFVCD 132 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~---------v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d 132 (564)
...+..+....++..|||--||+|.+....+...+... ++|.|+++.+++.|+.+....+ ..+.+.+.|
T Consensus 17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 33444455557889999999999999877766644544 8999999999999998875433 457888888
Q ss_pred CCcccccCCCCCCceeEEEEcccccCC-C-----hhHHHHHHHHHHhccCCCeEEEE
Q 008457 133 LISDDLSRQISPSSIDIVTMVFVLSAV-S-----PEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 133 ~~~~~~~~~~~~~~fD~V~~~~vl~~~-~-----~~~~~~~l~~~~r~LkpgG~lii 183 (564)
+.... +.++++|+|+++--...- . .+-...+++++.++|++...+++
T Consensus 97 ~~~l~----~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 97 ARELP----LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGGG----GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred hhhcc----cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 86543 467899999996544321 1 12234677888899999444443
No 396
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.92 E-value=0.00011 Score=66.58 Aligned_cols=130 Identities=15% Similarity=0.215 Sum_probs=80.7
Q ss_pred ceechhHH--HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceE
Q 008457 355 LMLWESAH--LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 432 (564)
Q Consensus 355 ~~~W~~~~--~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~ 432 (564)
...||-.. ...+|+...+ .+..|.|+|||-+.++..+. ...+|...|+-. .| ..|.
T Consensus 52 v~~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva-----------~n------~~Vt 109 (219)
T PF05148_consen 52 VKKWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVA-----------PN------PRVT 109 (219)
T ss_dssp HCTSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH----S---EEEEESS------------SS------TTEE
T ss_pred HhcCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHHhcc--cCceEEEeeccC-----------CC------CCEE
Confidence 45787765 4778887654 56799999999986664332 234699999842 11 1222
Q ss_pred EEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC-ChhHHH
Q 008457 433 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV-DEPSML 511 (564)
Q Consensus 433 ~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~-~~~~~~ 511 (564)
+. |-.+ .|++++.+|++|.+=-+.. .++..++.+..|+| +++| .+.++-...+. ..+.|.
T Consensus 110 ac--dia~-------vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvL-K~~G--------~L~IAEV~SRf~~~~~F~ 170 (219)
T PF05148_consen 110 AC--DIAN-------VPLEDESVDVAVFCLSLMG-TNWPDFIREANRVL-KPGG--------ILKIAEVKSRFENVKQFI 170 (219)
T ss_dssp ES---TTS--------S--TT-EEEEEEES---S-S-HHHHHHHHHHHE-EEEE--------EEEEEEEGGG-S-HHHHH
T ss_pred Ee--cCcc-------CcCCCCceeEEEEEhhhhC-CCcHHHHHHHHhee-ccCc--------EEEEEEecccCcCHHHHH
Confidence 21 1111 1567889999997655554 45899999999999 9988 88888776665 457899
Q ss_pred HHHHHcCCeEEEEc
Q 008457 512 SAATQCGFRLVDKW 525 (564)
Q Consensus 512 ~~~~~~g~~~~~~~ 525 (564)
+.+.+.||++....
T Consensus 171 ~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 171 KALKKLGFKLKSKD 184 (219)
T ss_dssp HHHHCTTEEEEEEE
T ss_pred HHHHHCCCeEEecc
Confidence 99999999999864
No 397
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.91 E-value=0.00045 Score=64.69 Aligned_cols=116 Identities=14% Similarity=0.062 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCC-----------CCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-----------FLA 429 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~-----------~~~ 429 (564)
...|.+|+.... ..++.+||..|||.|.-...++.++. +|+++|+|+.+++.+.+. |++.. ...
T Consensus 29 np~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e---~~~~~~~~~~~~~~~~~~~ 103 (226)
T PRK13256 29 NEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQ---NTINYEVIHGNDYKLYKGD 103 (226)
T ss_pred CHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHH---cCCCcceecccccceeccC
Confidence 455666665532 23678999999999966666666554 699999999999987552 11110 113
Q ss_pred ceEEEEeecCCCccchhhhhhcCCCccEEE--EeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 430 KLITKRLEWGNRDHIEAIKEENNEGFEVIL--GTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 430 ~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii--~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.+.+..-|+-+.+.. .-..++||+|+ ++=|-..++.....++.+.++| +|+|
T Consensus 104 ~i~~~~gD~f~l~~~----~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL-~pgg 157 (226)
T PRK13256 104 DIEIYVADIFNLPKI----ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVC-SNNT 157 (226)
T ss_pred ceEEEEccCcCCCcc----ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHh-CCCc
Confidence 455554444322100 00125799977 3334456788899999999999 9976
No 398
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.91 E-value=4.7e-05 Score=73.85 Aligned_cols=110 Identities=21% Similarity=0.182 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC---CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
..+.+|||+=|=||.++...+..+ ..+|+++|.|..+++.|+++...++ .++++++.|+...--... ..++||+|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~-~~~~fD~I 199 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK-KGGRFDLI 199 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH-HTT-EEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh-cCCCCCEE
Confidence 468999999999999999877652 3479999999999999999875443 578899999854211000 24689999
Q ss_pred EE---cccccCCC-hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 151 TM---VFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 151 ~~---~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++ .+.=.... ..+...++..+.++|+|||.|++..
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 99 12111111 3566788999999999999988753
No 399
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.90 E-value=5.2e-05 Score=73.48 Aligned_cols=88 Identities=22% Similarity=0.212 Sum_probs=50.2
Q ss_pred CCCeEEEeCCcccHH-HHHHHhcCCCEEEEEcCChhHHHHHHHHHHhc-CCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGI-CSMVAAGSADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l-~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..-++||||+|..++ +++.+....-+++|||+++.+++.|++|++.| ++. ++|.+....=. ...+..+. ...+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~---~~I~l~~~~~~-~~i~~~i~-~~~e 176 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE---SRIELRKQKNP-DNIFDGII-QPNE 176 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T---TTEEEEE--ST--SSTTTST-T--S
T ss_pred cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc---cceEEEEcCCc-cccchhhh-cccc
Confidence 356899999999755 44444455679999999999999999999999 775 67777644311 11222221 2345
Q ss_pred CccEEEEeceeeCCC
Q 008457 454 GFEVILGTDVSYIPE 468 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~ 468 (564)
.||+.+++..+|...
T Consensus 177 ~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 177 RFDFTMCNPPFYSSQ 191 (299)
T ss_dssp -EEEEEE-----SS-
T ss_pred eeeEEecCCccccCh
Confidence 899999998888754
No 400
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.00016 Score=65.80 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC----CCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR----QISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~----~~~~~~fD 148 (564)
.++.+|+|+|+-.|.|+..+++. .++..|+++|+.|- ....++.++++|++..+... .+....+|
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM----------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc----------ccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 67999999999999999998887 34566999999662 12345899999997765322 33455689
Q ss_pred EEEEcccc--------cCCC-hhHHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 149 IVTMVFVL--------SAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 149 ~V~~~~vl--------~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
+|++-..- +|.- ..-...++.-+..+|+|||.+++..+...
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 99983322 2321 12233455566789999999999876543
No 401
>PRK00536 speE spermidine synthase; Provisional
Probab=97.89 E-value=0.00022 Score=68.34 Aligned_cols=131 Identities=10% Similarity=-0.023 Sum_probs=85.4
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
..++||=+|-|-|+....++... .+|+++|+++++++.+++-+-.........++++.. |-. +...++|
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~--------~~~~~~f 140 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLL--------DLDIKKY 140 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhh--------hccCCcC
Confidence 45899999999998888888754 499999999999999998433211112234555543 211 1123689
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeEEEEcCCCCCCC
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDKWPSKNSAS 532 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~ 532 (564)
|+|| .|..|. +.+.+.+++.| +++| .++.-...-.... ......+++ .|..+.-+....|..
T Consensus 141 DVII-vDs~~~----~~fy~~~~~~L-~~~G--------i~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v~~y~~~vp~~ 205 (262)
T PRK00536 141 DLII-CLQEPD----IHKIDGLKRML-KEDG--------VFISVAKHPLLEHVSMQNALKNMGD-FFSIAMPFVAPLRIL 205 (262)
T ss_pred CEEE-EcCCCC----hHHHHHHHHhc-CCCc--------EEEECCCCcccCHHHHHHHHHHHHh-hCCceEEEEecCCCc
Confidence 9998 687655 56778999999 9988 5555333222222 234555555 788666654444443
No 402
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.89 E-value=0.00019 Score=66.32 Aligned_cols=123 Identities=16% Similarity=0.186 Sum_probs=88.0
Q ss_pred EEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCc-eeEEEEccc
Q 008457 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSS-IDIVTMVFV 155 (564)
Q Consensus 79 VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~-fD~V~~~~v 155 (564)
|.||||--|.+...|++.+...+++++|+++.-++.|++.....+ .++++..+|-.. +++.+. .|.|+...+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-----~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-----VLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-----G--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-----ccCCCCCCCEEEEecC
Confidence 689999999999999999766689999999999999999875433 678899998543 234444 788888664
Q ss_pred ccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcE
Q 008457 156 LSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDV 235 (564)
Q Consensus 156 l~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 235 (564)
=. ..+..+|.+....++....|++... -....++++|.+.||.+
T Consensus 76 GG----~lI~~ILe~~~~~~~~~~~lILqP~--------------------------------~~~~~LR~~L~~~gf~I 119 (205)
T PF04816_consen 76 GG----ELIIEILEAGPEKLSSAKRLILQPN--------------------------------THAYELRRWLYENGFEI 119 (205)
T ss_dssp -H----HHHHHHHHHTGGGGTT--EEEEEES--------------------------------S-HHHHHHHHHHTTEEE
T ss_pred CH----HHHHHHHHhhHHHhccCCeEEEeCC--------------------------------CChHHHHHHHHHCCCEE
Confidence 22 4577788888887776667776421 14788999999999999
Q ss_pred EEeeeee
Q 008457 236 EELGLCC 242 (564)
Q Consensus 236 ~~~~~~~ 242 (564)
++-....
T Consensus 120 ~~E~lv~ 126 (205)
T PF04816_consen 120 IDEDLVE 126 (205)
T ss_dssp EEEEEEE
T ss_pred EEeEEEe
Confidence 8766553
No 403
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.86 E-value=0.00024 Score=65.03 Aligned_cols=105 Identities=24% Similarity=0.377 Sum_probs=76.5
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChH----HHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPR----AVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~----~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
+...++.+||-+|+.+|....+++.- .+...|+++++|+. ++..|+++ .|+--+..|+........+- +
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DAr~P~~Y~~lv-~ 142 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDARHPEKYRMLV-E 142 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-TTSGGGGTTTS--
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccCCChHHhhccc-c
Confidence 34478999999999999999999887 55789999999994 45666655 46777888887654433443 4
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.+|+|++--. .+++.+-++.++...||+||.+++.-
T Consensus 143 ~VDvI~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 143 MVDVIFQDVA----QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp -EEEEEEE-S----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccEEEecCC----ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 8999999443 12577889999999999999999863
No 404
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.85 E-value=0.00022 Score=61.59 Aligned_cols=127 Identities=15% Similarity=0.074 Sum_probs=86.2
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 433 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~ 433 (564)
.+-|++-.+|+-|...-+.-.|.-|||+|.|||.+.-..++.+. ..++++++|++.+..+.+.... +.+
T Consensus 28 aI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~---------~~i 98 (194)
T COG3963 28 AILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG---------VNI 98 (194)
T ss_pred eecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC---------ccc
Confidence 34567777888888876666888999999999999988888763 5899999999998877664322 122
Q ss_pred EEeecCCCccchhhhhhcCCCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 434 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 434 ~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
.+.|-. +....+.+.....||.|+++=.+-+-. .--++++.+...| ..+ ++.+-++|.
T Consensus 99 i~gda~--~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl-~~g-------g~lvqftYg 158 (194)
T COG3963 99 INGDAF--DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRL-PAG-------GPLVQFTYG 158 (194)
T ss_pred cccchh--hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhc-CCC-------CeEEEEEec
Confidence 222111 111233445677899999887666533 4456677777777 554 445556655
No 405
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.85 E-value=0.00016 Score=65.86 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=100.2
Q ss_pred CccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCce
Q 008457 352 STGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKL 431 (564)
Q Consensus 352 ~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i 431 (564)
+.+.-.|..+..-+.-+ ...++.+|||-..|-|..++.++.+++.+|+-++.+|.+++++..|=-.-++.. ..+
T Consensus 114 t~~tdP~~Dt~~Kv~~V----~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~--~~i 187 (287)
T COG2521 114 TKGTDPLEDTLAKVELV----KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFE--IAI 187 (287)
T ss_pred ccCcCcHHHHHhhhhee----ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccc--ccc
Confidence 34455566554433322 233789999999999988888888888899999999999999887633322211 122
Q ss_pred EEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC---CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee---ccC
Q 008457 432 ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP---EAILPLFATAKELTASSNKSLREDQQPAFILCHIF---RQV 505 (564)
Q Consensus 432 ~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~---r~~ 505 (564)
++. .+ +..+..+.+.+.+||+||--..=+.. -.-+.+-+.+.++| +++| ...=|+..+- |..
T Consensus 188 ~ii---lG--D~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiL-krgG------rlFHYvG~Pg~ryrG~ 255 (287)
T COG2521 188 KII---LG--DAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRIL-KRGG------RLFHYVGNPGKRYRGL 255 (287)
T ss_pred EEe---cc--cHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHc-CcCC------cEEEEeCCCCcccccC
Confidence 322 22 33455566788899999843332221 13467889999999 9988 2122222222 333
Q ss_pred Ch-hHHHHHHHHcCCeEEEEc
Q 008457 506 DE-PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 506 ~~-~~~~~~~~~~g~~~~~~~ 525 (564)
+. ....+.+++.||.++...
T Consensus 256 d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 256 DLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred ChhHHHHHHHHhcCceeeeee
Confidence 32 467889999999976654
No 406
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=1e-05 Score=68.56 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=63.6
Q ss_pred CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccC
Q 008457 141 QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFS 220 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (564)
+|.+++.|+|++-++++|+..++-..++++++|.|||||+|-++.+...-.-..... ... .... .+.....+....+
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~-~vq-vggp-gpndhP~~r~v~t 118 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQH-DVQ-VGGP-GPNDHPLHRIVKT 118 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhh-hhh-ccCC-CCCCCcHHHHHHH
Confidence 678999999999999999998888999999999999999999987654322111111 000 0000 0000112222447
Q ss_pred HHHHHHHHHhCCCcEEE
Q 008457 221 NDFLTSLFKENGFDVEE 237 (564)
Q Consensus 221 ~~~l~~~l~~aGf~~~~ 237 (564)
...+..++.++||.+.-
T Consensus 119 ~r~m~n~~m~~~~~~kl 135 (185)
T COG4627 119 MRMMFNGFMDAGFVVKL 135 (185)
T ss_pred HHHHHHHHHhhhheehh
Confidence 88888999999997643
No 407
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.84 E-value=0.00012 Score=64.69 Aligned_cols=145 Identities=18% Similarity=0.147 Sum_probs=89.6
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHH----------HHHHHhcccccCCCeeEEEecCCccc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRA----------VNLVMTHKDFTETRVSTFVCDLISDD 137 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~----------l~~a~~~~~~~~~~i~~~~~d~~~~~ 137 (564)
.+....++.+|+|+=.|.|.+++.|+.. .|...|++.-..+.. -..+++.. ..|++.+-.+....
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~---~aN~e~~~~~~~A~- 117 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV---YANVEVIGKPLVAL- 117 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh---hhhhhhhCCccccc-
Confidence 3444589999999999999999999987 566678876554431 11111111 12222222222111
Q ss_pred ccCCCCCCceeEEEEcccccC-----CChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCC
Q 008457 138 LSRQISPSSIDIVTMVFVLSA-----VSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGD 212 (564)
Q Consensus 138 ~~~~~~~~~fD~V~~~~vl~~-----~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (564)
+ +.+..|++..+..-|- ++......+...+++.|||||++++.++......... +
T Consensus 118 ---~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~----------------d 177 (238)
T COG4798 118 ---G-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS----------------D 177 (238)
T ss_pred ---C-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh----------------h
Confidence 1 3445566665333221 2245677899999999999999999887653321111 1
Q ss_pred CceeeccCHHHHHHHHHhCCCcEEE
Q 008457 213 GTRAFYFSNDFLTSLFKENGFDVEE 237 (564)
Q Consensus 213 ~~~~~~~~~~~l~~~l~~aGf~~~~ 237 (564)
....++.+...+....+.+||+...
T Consensus 178 t~~~~ri~~a~V~a~veaaGFkl~a 202 (238)
T COG4798 178 TITLHRIDPAVVIAEVEAAGFKLEA 202 (238)
T ss_pred hhhhcccChHHHHHHHHhhcceeee
Confidence 1122345788999999999998865
No 408
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.83 E-value=3.3e-05 Score=72.40 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHH-HHHHhcCCCC-------CCCceE
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLA-QNVTANLKPP-------FLAKLI 432 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~-~n~~~n~~~~-------~~~~i~ 432 (564)
+..|.+|+.. .....+.+||..|||.|.-...++.+ +.+|+++|+++.+++.+. +|........ ..++|.
T Consensus 23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
T PF05724_consen 23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT 100 (218)
T ss_dssp THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence 5678888776 23346779999999999666666665 458999999999999873 3322111110 123344
Q ss_pred EEEeecCCCccchhhhhhcCCCccEEEEec--eeeCCCChHHHHHHHHHHhhccCCCCCCCCCcE-EEEEEeecc---CC
Q 008457 433 TKRLEWGNRDHIEAIKEENNEGFEVILGTD--VSYIPEAILPLFATAKELTASSNKSLREDQQPA-FILCHIFRQ---VD 506 (564)
Q Consensus 433 ~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d--~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~-~~~~~~~r~---~~ 506 (564)
+..-|.-+. .+...++||+|+=.- |-..++..+...+.+.++| +|+| . ++++..... ..
T Consensus 101 ~~~gDfF~l------~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll-~p~g--------~~lLi~l~~~~~~~~G 165 (218)
T PF05724_consen 101 IYCGDFFEL------PPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLL-KPGG--------RGLLITLEYPQGEMEG 165 (218)
T ss_dssp EEES-TTTG------GGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCE-EEEE--------EEEEEEEES-CSCSSS
T ss_pred EEEcccccC------ChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHh-CCCC--------cEEEEEEEcCCcCCCC
Confidence 544444321 111224799988332 3345788999999999999 9987 4 344433221 11
Q ss_pred h-----hHHHHHHHHcCCeEEEEcC
Q 008457 507 E-----PSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 507 ~-----~~~~~~~~~~g~~~~~~~~ 526 (564)
. ..-+..+-..+|+++.+..
T Consensus 166 PPf~v~~~ev~~l~~~~f~i~~l~~ 190 (218)
T PF05724_consen 166 PPFSVTEEEVRELFGPGFEIEELEE 190 (218)
T ss_dssp SS----HHHHHHHHTTTEEEEEEEE
T ss_pred cCCCCCHHHHHHHhcCCcEEEEEec
Confidence 1 1233333347999888864
No 409
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.81 E-value=2.8e-05 Score=71.19 Aligned_cols=142 Identities=20% Similarity=0.222 Sum_probs=77.2
Q ss_pred hhHHHHHHHHhcCCCCC--CCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEE
Q 008457 359 ESAHLMAAVLARNPTIV--AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK 434 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~--~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~ 434 (564)
.|+..|.+.+....-+. .+.+||||||+.|+.+-.++... ..+|+++|+.+. ... ..+...
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~----~~~~~i 68 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL----QNVSFI 68 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-----TTEEBT
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc----cceeee
Confidence 46777888887766333 45899999999999999999887 579999999765 000 001111
Q ss_pred EeecCCCccchhhhhh---cCCCccEEEEeceeeCC------------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 008457 435 RLEWGNRDHIEAIKEE---NNEGFEVILGTDVSYIP------------EAILPLFATAKELTASSNKSLREDQQPAFILC 499 (564)
Q Consensus 435 ~l~w~~~~~~~~~~~~---~~~~fD~Ii~~d~~y~~------------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~ 499 (564)
..|-.+......+... ...+||+|+ +|+-.+. ......+..+..+| +++| .+++-
T Consensus 69 ~~d~~~~~~~~~i~~~~~~~~~~~dlv~-~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L-~~gG--------~~v~K 138 (181)
T PF01728_consen 69 QGDITNPENIKDIRKLLPESGEKFDLVL-SDMAPNVSGDRNIDEFISIRLILSQLLLALELL-KPGG--------TFVIK 138 (181)
T ss_dssp TGGGEEEEHSHHGGGSHGTTTCSESEEE-E-------SSHHSSHHHHHHHHHHHHHHHHHHH-CTTE--------EEEEE
T ss_pred ecccchhhHHHhhhhhccccccCcceec-cccccCCCCchhhHHHHHHHHHHHHHHHHHhhh-cCCC--------EEEEE
Confidence 1110000111122221 226999987 6773221 12333334455668 8877 66654
Q ss_pred EeeccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 500 HIFRQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 500 ~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
.-..... ..++..+.. .|+.+++...
T Consensus 139 ~~~~~~~-~~~~~~l~~-~F~~v~~~Kp 164 (181)
T PF01728_consen 139 VFKGPEI-EELIYLLKR-CFSKVKIVKP 164 (181)
T ss_dssp ESSSTTS-HHHHHHHHH-HHHHEEEEE-
T ss_pred eccCccH-HHHHHHHHh-CCeEEEEEEC
Confidence 4443333 366766654 6666666643
No 410
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.77 E-value=0.00015 Score=66.43 Aligned_cols=107 Identities=16% Similarity=0.252 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccc--cCCCeeEEEecCCcc--cccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISD--DLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~--~~~~i~~~~~d~~~~--~~~~~~~~~~fD 148 (564)
..++++||||.=||.-+..++...| +.+|+++|+++...+.+.+..+. ....|+++++..... .+......++||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 5689999999999988888887754 68999999999999999765443 347788888876431 112233568999
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.++. .|.- +.-...+.++.+++|+||++++-.
T Consensus 152 faFv----DadK-~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 152 FAFV----DADK-DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEE----ccch-HHHHHHHHHHHhhcccccEEEEec
Confidence 9988 3332 344588999999999999999853
No 411
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00013 Score=74.42 Aligned_cols=137 Identities=10% Similarity=0.110 Sum_probs=89.9
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
++.+|..++.++..+..++.+||+-|||| +.+++++++.++|+++++++++++-|+.|+..|++. +.++..-.
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG-~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis----Na~Fi~gq-- 439 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTG-TIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS----NATFIVGQ-- 439 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCC-ceehhhhccccceeeeecChhhcchhhhcchhcCcc----ceeeeecc--
Confidence 46778888888888889999999999999 666666778899999999999999999999999984 33333220
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHH
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA 514 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 514 (564)
..+.+..+..-.-+.-++|.-.|.-- .-.+..+++.+...- .+ ...+|++...+.. ...+.+.|
T Consensus 440 aE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~-~~--------~rlvyvSCn~~t~-ar~v~~lc 503 (534)
T KOG2187|consen 440 AEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYK-NP--------RRLVYVSCNPHTA-ARNVIDLC 503 (534)
T ss_pred hhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhcc-Cc--------cceEEEEcCHHHh-hhhHHHhh
Confidence 11122222211112345555445433 446667777666655 44 3367776666543 12445554
No 412
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.76 E-value=0.00033 Score=64.56 Aligned_cols=127 Identities=12% Similarity=0.076 Sum_probs=82.6
Q ss_pred eEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccE
Q 008457 379 KVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV 457 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~ 457 (564)
.+||||||.|.....+|... ...++++|+....+..+...+...++ .++.+...|-.. .+..+ ++++++|-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l----~Nv~~~~~da~~--~l~~~--~~~~~v~~ 91 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL----KNVRFLRGDARE--LLRRL--FPPGSVDR 91 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT----SSEEEEES-CTT--HHHHH--STTTSEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc----cceEEEEccHHH--HHhhc--ccCCchhe
Confidence 89999999998877777654 56999999999999998888888766 567776554332 12111 24578887
Q ss_pred EEEe--ceeeCC------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHc--CCeEEE
Q 008457 458 ILGT--DVSYIP------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC--GFRLVD 523 (564)
Q Consensus 458 Ii~~--d~~y~~------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--g~~~~~ 523 (564)
|... |.-.-. -.-+++++.+.++| +++| .+.+.+-...... ...+.+.+. +|+...
T Consensus 92 i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L-~~gG--------~l~~~TD~~~y~~-~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 92 IYINFPDPWPKKRHHKRRLVNPEFLELLARVL-KPGG--------ELYFATDVEEYAE-WMLEQFEESHPGFENIE 157 (195)
T ss_dssp EEEES-----SGGGGGGSTTSHHHHHHHHHHE-EEEE--------EEEEEES-HHHHH-HHHHHHHHHSTTEEEE-
T ss_pred EEEeCCCCCcccchhhhhcCCchHHHHHHHHc-CCCC--------EEEEEeCCHHHHH-HHHHHHHhcCcCeEEcc
Confidence 7632 321111 15688999999999 9988 8877765554433 345555553 677663
No 413
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.75 E-value=0.00018 Score=72.86 Aligned_cols=145 Identities=15% Similarity=0.108 Sum_probs=82.8
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 358 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 358 W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
+..+..|.+++.+.....++ +||||-||+|.++..++. .+++|+++|.++.+++.|++|+..|++ .++.+...+
T Consensus 179 ~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~-~~~~V~gvE~~~~av~~A~~Na~~N~i----~n~~f~~~~ 252 (352)
T PF05958_consen 179 PEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAK-KAKKVIGVEIVEEAVEDARENAKLNGI----DNVEFIRGD 252 (352)
T ss_dssp HHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHC-CSSEEEEEES-HHHHHHHHHHHHHTT------SEEEEE--
T ss_pred HHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHh-hCCeEEEeeCCHHHHHHHHHHHHHcCC----CcceEEEee
Confidence 34566677777665544344 899999999977776654 567899999999999999999999997 456665443
Q ss_pred cCC-------Cccchhhh--hhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh
Q 008457 438 WGN-------RDHIEAIK--EENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP 508 (564)
Q Consensus 438 w~~-------~~~~~~~~--~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~ 508 (564)
-.+ ...+..+. .+....+|+|| .|+.-.-- .+.+++.+. +. ...+|++..+.....
T Consensus 253 ~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vi-lDPPR~G~-~~~~~~~~~----~~--------~~ivYvSCnP~tlaR- 317 (352)
T PF05958_consen 253 AEDFAKALAKAREFNRLKGIDLKSFKFDAVI-LDPPRAGL-DEKVIELIK----KL--------KRIVYVSCNPATLAR- 317 (352)
T ss_dssp SHHCCCHHCCS-GGTTGGGS-GGCTTESEEE-E---TT-S-CHHHHHHHH----HS--------SEEEEEES-HHHHHH-
T ss_pred ccchhHHHHhhHHHHhhhhhhhhhcCCCEEE-EcCCCCCc-hHHHHHHHh----cC--------CeEEEEECCHHHHHH-
Confidence 211 00111111 12234689875 45444332 244455443 33 228888866655432
Q ss_pred HHHHHHHHcCCeEEEEc
Q 008457 509 SMLSAATQCGFRLVDKW 525 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~~ 525 (564)
+ +..+. .|+++.++-
T Consensus 318 D-l~~L~-~~y~~~~v~ 332 (352)
T PF05958_consen 318 D-LKILK-EGYKLEKVQ 332 (352)
T ss_dssp H-HHHHH-CCEEEEEEE
T ss_pred H-HHHHh-hcCEEEEEE
Confidence 2 23343 499998875
No 414
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.71 E-value=0.00011 Score=74.88 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=67.5
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCccc--ccC--CC--------
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDD--LSR--QI-------- 142 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~--~~-------- 142 (564)
+.+|||++||+|.++..+++. ..+|+|+|.++.+++.|+++....+ .+++++++|+.... +.. .+
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 357999999999999988887 3589999999999999998865443 47899999985421 100 00
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
...+||+|+.-=-=.-+ -..+++.+.+ |++.++++.
T Consensus 285 ~~~~~D~v~lDPPR~G~----~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 285 KSYNFSTIFVDPPRAGL----DDETLKLVQA---YERILYISC 320 (362)
T ss_pred cCCCCCEEEECCCCCCC----cHHHHHHHHc---cCCEEEEEe
Confidence 02258999882210111 1234444443 678888763
No 415
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.71 E-value=0.0012 Score=62.93 Aligned_cols=158 Identities=17% Similarity=0.194 Sum_probs=93.2
Q ss_pred hHHHHhhhccC----CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcc---cc--------------
Q 008457 63 LDKEWGRYFSG----AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK---DF-------------- 121 (564)
Q Consensus 63 ~~~~~~~~l~~----~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~---~~-------------- 121 (564)
+..++..++++ ....+||--|||.|+++.-|+.. |..+-|=++|--|+=...-.. ..
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~s 211 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYS 211 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccc
Confidence 33444444443 45789999999999999999988 455666688777753221100 00
Q ss_pred ----------------------cC--CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCC
Q 008457 122 ----------------------TE--TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKP 177 (564)
Q Consensus 122 ----------------------~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lkp 177 (564)
.+ .....-.+|+... ...+-..+.||+|+.++.+.-- .++-.+|..++.+|||
T Consensus 212 n~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~ev-y~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~ 288 (369)
T KOG2798|consen 212 NSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEV-YGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKP 288 (369)
T ss_pred cccccccccccccCccccccccCCCCCCccccccceeEE-ecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccC
Confidence 00 0000011222110 0001122469999998776655 5888999999999999
Q ss_pred CeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 178 TGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 178 gG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
||+++=.-+.........- . ......-++.+++..+.+..||++++..
T Consensus 289 GGvWiNlGPLlYHF~d~~g--~------------~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 289 GGVWINLGPLLYHFEDTHG--V------------ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CcEEEeccceeeeccCCCC--C------------cccccccccHHHHHHHHHhcCcEEEEee
Confidence 9998853222111000000 0 0011224689999999999999998754
No 416
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.71 E-value=1.3e-05 Score=71.26 Aligned_cols=120 Identities=21% Similarity=0.294 Sum_probs=83.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
...++||||+|-|-++...+ ....+|.+|++|..|.+.+++- .-| -...++|.+. +-+|
T Consensus 112 ~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk-~yn---------Vl~~~ew~~t----------~~k~ 170 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKK-NYN---------VLTEIEWLQT----------DVKL 170 (288)
T ss_pred CCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhc-CCc---------eeeehhhhhc----------Ccee
Confidence 45799999999996655443 3345799999999998877652 011 1245677654 2389
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhcc-CCCCCCCCCcEEEEEEee-------------------------ccCCh--
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASS-NKSLREDQQPAFILCHIF-------------------------RQVDE-- 507 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~-~g~~~~~~~~~~~~~~~~-------------------------r~~~~-- 507 (564)
|+|.+-.++-.-.+.-.|++-|..+| +| +| +++++..- |...+
T Consensus 171 dli~clNlLDRc~~p~kLL~Di~~vl-~psng--------rvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v 241 (288)
T KOG3987|consen 171 DLILCLNLLDRCFDPFKLLEDIHLVL-APSNG--------RVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEV 241 (288)
T ss_pred ehHHHHHHHHhhcChHHHHHHHHHHh-ccCCC--------cEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHH
Confidence 99999888877778899999999999 77 44 44444322 21111
Q ss_pred hHHHHHHHHcCCeEEEEc
Q 008457 508 PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 508 ~~~~~~~~~~g~~~~~~~ 525 (564)
.+|.+.++.+|++++-..
T Consensus 242 ~~~~e~lr~~g~~veawT 259 (288)
T KOG3987|consen 242 ARFMELLRNCGYRVEAWT 259 (288)
T ss_pred HHHHHHHHhcCchhhhhh
Confidence 367788899999988543
No 417
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.71 E-value=0.0002 Score=71.71 Aligned_cols=126 Identities=14% Similarity=0.214 Sum_probs=79.7
Q ss_pred ccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHh-------CCCcEEEEEeCChHHHHHHHhcccccC---CCeeE
Q 008457 59 DRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-------YPDVFVYACDFSPRAVNLVMTHKDFTE---TRVST 128 (564)
Q Consensus 59 ~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-------~~~~~v~~iD~s~~~l~~a~~~~~~~~---~~i~~ 128 (564)
....+...+.+++...++.+|+|-+||+|.++..+.+. .+..+++|+|+++.++..|+-+..-.+ ....+
T Consensus 30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 30 TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp --HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 34555566677777778889999999999998887763 257899999999999998876542211 22347
Q ss_pred EEecCCcccccCCCCCCceeEEEEcccccCC------------------C-hhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 129 FVCDLISDDLSRQISPSSIDIVTMVFVLSAV------------------S-PEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~------------------~-~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
...|....... .....||+|+++--+.-. + ...-..++..+.+.|++||++.+..+
T Consensus 110 ~~~d~l~~~~~--~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 110 IQGDSLENDKF--IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EES-TTTSHSC--TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccc--ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 77776543221 125789999995322111 0 01223588999999999999877543
No 418
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.70 E-value=0.00035 Score=67.16 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=65.2
Q ss_pred CCeEEEEcCCccccHHHHHH-h-CCCcEEEEEeCChHHHHHHHhccc---ccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 76 RKDVLEVGCGAGNTIFPLIA-A-YPDVFVYACDFSPRAVNLVMTHKD---FTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~-~-~~~~~v~~iD~s~~~l~~a~~~~~---~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
+.+|+=||||.=-++..+.. . .++..|+++|+++++++.+++-.. ....++.|+++|...... .-..||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~----dl~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY----DLKEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G----G----SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc----ccccCCEE
Confidence 46999999998777655544 3 467889999999999999987654 235788999999864322 23589999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+......- ..+.-.++|.++.+.++||+.+++.
T Consensus 197 ~lAalVg~-~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 197 FLAALVGM-DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EE-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEhhhccc-ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 98765442 2346678999999999999998885
No 419
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00025 Score=73.25 Aligned_cols=109 Identities=23% Similarity=0.233 Sum_probs=79.0
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+.+...++.+|||+=||.|.++..|++. ..+|+|+|+++++++.|+++.+.++ .|++|..+++...... ......
T Consensus 286 ~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~-~~~~~~ 362 (432)
T COG2265 286 LEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA-WWEGYK 362 (432)
T ss_pred HHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh-ccccCC
Confidence 34455567899999999999999999976 6789999999999999999887655 5689998887543221 112357
Q ss_pred eeEEEEcccccCCChhHHH-HHHHHHHhccCCCeEEEEEe
Q 008457 147 IDIVTMVFVLSAVSPEKMS-LVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~-~~l~~~~r~LkpgG~lii~~ 185 (564)
+|+|+. --|+.... .+++.+.+ ++|..+++++.
T Consensus 363 ~d~Vvv-----DPPR~G~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 363 PDVVVV-----DPPRAGADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred CCEEEE-----CCCCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence 899988 23333333 34554444 67888888864
No 420
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.69 E-value=9e-05 Score=68.50 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=66.7
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcc----------cccCCCeeEEEecCCccc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK----------DFTETRVSTFVCDLISDD 137 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~----------~~~~~~i~~~~~d~~~~~ 137 (564)
.+.+...++...+|+|||.|......+...+-.+.+||++.+...+.|+... .....++++..+|+...+
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 3444557899999999999999888876653445999999999887776422 112356778888876543
Q ss_pred ccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEE
Q 008457 138 LSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 138 ~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
.... .-...|+|+++... ++ +++...|.++...||+|.+++-
T Consensus 115 ~~~~-~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 115 FVKD-IWSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHH-HGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred hHhh-hhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEE
Confidence 2100 01346999998763 23 4666777888889999888764
No 421
>PRK13699 putative methylase; Provisional
Probab=97.69 E-value=0.0044 Score=58.63 Aligned_cols=56 Identities=18% Similarity=0.022 Sum_probs=42.9
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHh
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTA 421 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~ 421 (564)
|.+.+..... .+|..|||--||+| -.+.++.+.+.+.+++|++++..+.+.+.+..
T Consensus 152 l~~~~i~~~s-~~g~~vlDpf~Gsg-tt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 152 SLQPLIESFT-HPNAIVLDPFAGSG-STCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHhC-CCCCEEEeCCCCCC-HHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 4444443322 27889999999999 66666667778999999999999988887765
No 422
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.69 E-value=7.1e-05 Score=68.15 Aligned_cols=110 Identities=12% Similarity=0.113 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
..+.++||+-||+|.++...+.++ ..+|+.+|.++.++...+++....+ .++..+..|+...-....-...+||+|+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 378999999999999999888884 4589999999999999998875433 3577788886432111111467899999
Q ss_pred EcccccCCChhH-HHHHHHHHH--hccCCCeEEEEEecC
Q 008457 152 MVFVLSAVSPEK-MSLVLQNIK--KVLKPTGYVLFRDYA 187 (564)
Q Consensus 152 ~~~vl~~~~~~~-~~~~l~~~~--r~LkpgG~lii~~~~ 187 (564)
+-=-...- . ...++..+. .+|+++|.+++....
T Consensus 120 lDPPY~~~---~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 120 LDPPYAKG---LYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp E--STTSC---HHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred ECCCcccc---hHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 84322221 2 366777776 899999998886433
No 423
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.68 E-value=4.9e-05 Score=66.59 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
....+.|+|+|+|.++...+.. .-+|++++.+|...+.|.++..-.+ .+++++.+|+...++ +..|+|+|-
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f------e~ADvvicE 103 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF------ENADVVICE 103 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc------cccceeHHH
Confidence 3488999999999998877766 5689999999999999999865433 688999999976543 567999995
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEE
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
..=..+-.+....++..+...||.++.++=
T Consensus 104 mlDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 104 MLDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 533333235667788888889999998874
No 424
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=3.9e-05 Score=65.62 Aligned_cols=132 Identities=20% Similarity=0.196 Sum_probs=86.8
Q ss_pred CCCCeEEEEcCCccccH-HHHHHhCCCcEEEEEeCChHHHHHHHhccccc----CCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTI-FPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~-~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+.+||++|.|--.++ ..++...|...|...|-+...++..++..... ..++.....+.... .+.....+||
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a--qsq~eq~tFD 105 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA--QSQQEQHTFD 105 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh--HHHHhhCccc
Confidence 34688999999954444 44455567788999999999988776643211 11221211111111 1112446899
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHH
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLF 228 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 228 (564)
+|+|..++..- +....+.+.+.+.|+|.|.-++..+-.++ +.+.+.+..
T Consensus 106 iIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~fsPRRg~-----------------------------sL~kF~de~ 154 (201)
T KOG3201|consen 106 IILAADCLFFD--EHHESLVDTIKSLLRPSGRALLFSPRRGQ-----------------------------SLQKFLDEV 154 (201)
T ss_pred EEEeccchhHH--HHHHHHHHHHHHHhCcccceeEecCcccc-----------------------------hHHHHHHHH
Confidence 99999987654 56677889999999999997776443322 466677888
Q ss_pred HhCCCcEEEe
Q 008457 229 KENGFDVEEL 238 (564)
Q Consensus 229 ~~aGf~~~~~ 238 (564)
..+||.+...
T Consensus 155 ~~~gf~v~l~ 164 (201)
T KOG3201|consen 155 GTVGFTVCLE 164 (201)
T ss_pred HhceeEEEec
Confidence 8889887644
No 425
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.68 E-value=7.2e-05 Score=65.59 Aligned_cols=95 Identities=20% Similarity=0.250 Sum_probs=66.3
Q ss_pred CCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 377 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
...+-|||+|+|.++.. ++..+.+|++++.+|...+++++|+..++. .++.+..-|-.+ +.-...|
T Consensus 33 ~d~~~DLGaGsGiLs~~-Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~----~n~evv~gDA~~---------y~fe~AD 98 (252)
T COG4076 33 EDTFADLGAGSGILSVV-AAHAAERVIAIEKDPKRARLAEENLHVPGD----VNWEVVVGDARD---------YDFENAD 98 (252)
T ss_pred hhceeeccCCcchHHHH-HHhhhceEEEEecCcHHHHHhhhcCCCCCC----cceEEEeccccc---------ccccccc
Confidence 36899999999955544 455588999999999999999999977776 456555433221 1123568
Q ss_pred EEEEe--ceeeCCCChHHHHHHHHHHhhccCC
Q 008457 457 VILGT--DVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 457 ~Ii~~--d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+|+|- |+..-.+-.-+.++.+-..| +..+
T Consensus 99 vvicEmlDTaLi~E~qVpV~n~vleFL-r~d~ 129 (252)
T COG4076 99 VVICEMLDTALIEEKQVPVINAVLEFL-RYDP 129 (252)
T ss_pred eeHHHHhhHHhhcccccHHHHHHHHHh-hcCC
Confidence 87743 55555555666777777788 6655
No 426
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00034 Score=62.96 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+||.||-|-|.....+.++.|. +-+-|+..|..++..+...-....++....+-.. +....++++.||-|+.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~We--Dvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWE--DVLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchH--hhhccccccCcceeEee
Confidence 78999999999999988877776554 4457899999999998875444456665555432 22235688999999985
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
..-++. +++..+.+.+.|+|||+|++-+.
T Consensus 177 Ty~e~y--Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 177 TYSELY--EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred chhhHH--HHHHHHHHHHhhhcCCCceEEEe
Confidence 544555 78999999999999999998654
No 427
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.61 E-value=7.2e-05 Score=65.94 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=51.4
Q ss_pred eEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCc-eeEEEE
Q 008457 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSS-IDIVTM 152 (564)
Q Consensus 78 ~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~-fD~V~~ 152 (564)
.|+|+.||.|..+..+++. ..+|+++|+++..++.|+.+...- ..+|.++++|+..... .+.... +|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~--~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLK--RLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGG--GB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHh--hccccccccEEEE
Confidence 6999999999999999998 567999999999999999886543 3689999999865321 122222 799987
No 428
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.58 E-value=0.00075 Score=62.57 Aligned_cols=127 Identities=17% Similarity=0.257 Sum_probs=88.2
Q ss_pred eechhHH--HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEE
Q 008457 356 MLWESAH--LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 433 (564)
Q Consensus 356 ~~W~~~~--~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~ 433 (564)
.-||-.. ++.++|...+ ....|-|+|||-+-++. .-...|+..|+-+ .| .+|.+
T Consensus 161 ~kWP~nPld~ii~~ik~r~---~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a-----------~~------~~V~~ 216 (325)
T KOG3045|consen 161 KKWPENPLDVIIRKIKRRP---KNIVIADFGCGEAKIAS----SERHKVHSFDLVA-----------VN------ERVIA 216 (325)
T ss_pred HhCCCChHHHHHHHHHhCc---CceEEEecccchhhhhh----ccccceeeeeeec-----------CC------Cceee
Confidence 4465543 4666766553 56789999999885543 3345799999832 11 22222
Q ss_pred EEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC-ChhHHHH
Q 008457 434 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV-DEPSMLS 512 (564)
Q Consensus 434 ~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~-~~~~~~~ 512 (564)
..+ .+ .++.+++.|++|.|=-+. ..++..++..+.++| +++| .++++-...+. +...|.+
T Consensus 217 cDm--~~-------vPl~d~svDvaV~CLSLM-gtn~~df~kEa~RiL-k~gG--------~l~IAEv~SRf~dv~~f~r 277 (325)
T KOG3045|consen 217 CDM--RN-------VPLEDESVDVAVFCLSLM-GTNLADFIKEANRIL-KPGG--------LLYIAEVKSRFSDVKGFVR 277 (325)
T ss_pred ccc--cC-------CcCccCcccEEEeeHhhh-cccHHHHHHHHHHHh-ccCc--------eEEEEehhhhcccHHHHHH
Confidence 211 11 156778999998765444 446888999999999 9988 89998877665 4467999
Q ss_pred HHHHcCCeEEEEc
Q 008457 513 AATQCGFRLVDKW 525 (564)
Q Consensus 513 ~~~~~g~~~~~~~ 525 (564)
.+.+.||.+.+..
T Consensus 278 ~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 278 ALTKLGFDVKHKD 290 (325)
T ss_pred HHHHcCCeeeehh
Confidence 9999999999885
No 429
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.58 E-value=0.00011 Score=66.68 Aligned_cols=97 Identities=7% Similarity=0.105 Sum_probs=75.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
....++|||||.|.+.-.+...+..+++.+|.|-.|++.++.. +. ..+.+..+.- +. +..++..+++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qd-------p~i~~~~~v~-DE----E~Ldf~ens~ 138 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QD-------PSIETSYFVG-DE----EFLDFKENSV 138 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CC-------CceEEEEEec-ch----hcccccccch
Confidence 3457999999999999888888888999999999999887763 11 2233333321 11 1124567899
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
|+||++--++...+++.-+..++..| ||.|
T Consensus 139 DLiisSlslHW~NdLPg~m~~ck~~l-KPDg 168 (325)
T KOG2940|consen 139 DLIISSLSLHWTNDLPGSMIQCKLAL-KPDG 168 (325)
T ss_pred hhhhhhhhhhhhccCchHHHHHHHhc-CCCc
Confidence 99999999999999999999999999 9987
No 430
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.57 E-value=7.3e-05 Score=68.67 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=66.3
Q ss_pred CCCeEEEeCCccc----HHHHHHHhc---CC---CEEEEEcCChhHHHHHHHHHHhc----CCC------------C---
Q 008457 376 AGKKVLELGCGCG----GICSMVAAG---SA---DLVVATDGDSIALDLLAQNVTAN----LKP------------P--- 426 (564)
Q Consensus 376 ~~~~vLelG~G~G----~l~~~~~~~---~~---~~v~~tD~~~~~l~~~~~n~~~n----~~~------------~--- 426 (564)
+..+|+-.||+|| .+++++... .. -+|++||+|+.+++.|++-+-.. +++ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999 444444441 12 38999999999999988422111 110 0
Q ss_pred -----CCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceee--CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 008457 427 -----FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY--IPEAILPLFATAKELTASSNKSLREDQQPAFILC 499 (564)
Q Consensus 427 -----~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y--~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~ 499 (564)
....|.+...+..+. ....+.||+|++-+|+- +.+....+++.+.+.| +|+| .+++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~-------~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L-~pgG--------~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDP-------DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSL-KPGG--------YLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGE-EEEE--------EEEE-
T ss_pred eEChHHcCceEEEecccCCC-------CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHc-CCCC--------EEEEe
Confidence 013477777766541 12356999999999863 4667899999999999 9988 77776
Q ss_pred Eeec
Q 008457 500 HIFR 503 (564)
Q Consensus 500 ~~~r 503 (564)
+...
T Consensus 175 ~sE~ 178 (196)
T PF01739_consen 175 HSES 178 (196)
T ss_dssp TT--
T ss_pred cCcc
Confidence 5544
No 431
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.54 E-value=0.00013 Score=71.02 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=73.9
Q ss_pred CCeEEEeCCccc----HHHHHHHhcC-----CCEEEEEcCChhHHHHHHHHHHhc----CCC------------------
Q 008457 377 GKKVLELGCGCG----GICSMVAAGS-----ADLVVATDGDSIALDLLAQNVTAN----LKP------------------ 425 (564)
Q Consensus 377 ~~~vLelG~G~G----~l~~~~~~~~-----~~~v~~tD~~~~~l~~~~~n~~~n----~~~------------------ 425 (564)
.-+|+-.||+|| .+++++.... .-+|+|||+|+.+++.|++-+-.. +++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 4444444321 237999999999999998653110 100
Q ss_pred -----CCCCceEEEEeecCCCccchhhhhh-cCCCccEEEEeceeeC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 008457 426 -----PFLAKLITKRLEWGNRDHIEAIKEE-NNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFI 497 (564)
Q Consensus 426 -----~~~~~i~~~~l~w~~~~~~~~~~~~-~~~~fD~Ii~~d~~y~--~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~ 497 (564)
.....|.+...+..+. ++ ..+.||+|++.+++.+ .+....+++.+.+.| +|+| .++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~-------~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L-~pgG--------~L~ 259 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAK-------QWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLL-KPDG--------LLF 259 (287)
T ss_pred EEEChHHHccCEEEcccCCCC-------CCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHh-CCCc--------EEE
Confidence 0113344544444332 11 2468999999887643 567999999999999 9988 777
Q ss_pred EEEeec
Q 008457 498 LCHIFR 503 (564)
Q Consensus 498 ~~~~~r 503 (564)
+.+...
T Consensus 260 lG~sEs 265 (287)
T PRK10611 260 AGHSEN 265 (287)
T ss_pred EeCccc
Confidence 765433
No 432
>PHA01634 hypothetical protein
Probab=97.54 E-value=0.00042 Score=56.80 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=47.5
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKP 425 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~ 425 (564)
.+.+++|+|+|+++|--++.++.+++++|++.+.++...+.++.|+..|..-
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~ 77 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNIC 77 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheee
Confidence 3589999999999998888888899999999999999999999999998763
No 433
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.53 E-value=0.0007 Score=61.49 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=78.5
Q ss_pred eEEEeCCcccHHHHHHHh--cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 379 KVLELGCGCGGICSMVAA--GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~--~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
+++|+|+|.| ++++.++ ....+|+++|....=+..++.-+..-++ .++.+..-...+ .....+||
T Consensus 51 ~~lDiGSGaG-fPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L----~nv~v~~~R~E~--------~~~~~~fd 117 (184)
T PF02527_consen 51 KVLDIGSGAG-FPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL----SNVEVINGRAEE--------PEYRESFD 117 (184)
T ss_dssp EEEEETSTTT-TTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-----SSEEEEES-HHH--------TTTTT-EE
T ss_pred eEEecCCCCC-ChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC----CCEEEEEeeecc--------cccCCCcc
Confidence 8999999998 6655544 2345899999998877777776666555 346665444332 12457999
Q ss_pred EEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC-h-hHHHHHHHHcCCeEEEEc
Q 008457 457 VILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-E-PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 457 ~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~-~-~~~~~~~~~~g~~~~~~~ 525 (564)
+|++--+ ..+..++..+..++ +++| . +++++-+... + ...-..+...|.++..+-
T Consensus 118 ~v~aRAv----~~l~~l~~~~~~~l-~~~G--------~-~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 118 VVTARAV----APLDKLLELARPLL-KPGG--------R-LLAYKGPDAEEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp EEEEESS----SSHHHHHHHHGGGE-EEEE--------E-EEEEESS--HHHHHTHHHHHHCCCEEEEEEE
T ss_pred EEEeehh----cCHHHHHHHHHHhc-CCCC--------E-EEEEcCCChHHHHHHHHhHHHHhCCEEeeec
Confidence 9986553 46889999999999 8876 4 4444544322 2 344555566778777765
No 434
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.52 E-value=0.00045 Score=61.47 Aligned_cols=104 Identities=21% Similarity=0.213 Sum_probs=77.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
-.+++|||+|+|+|-.+..-++.+ ...|+..|+.|......+-+.+.++..+.+...|... .+..||+++..
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-------~~~~~Dl~Lag 149 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-------SPPAFDLLLAG 149 (218)
T ss_pred cccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-------CCcceeEEEee
Confidence 468999999999998887777663 4579999999999988888887777888888888753 45789999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCC-CeEEEEEecCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKP-TGYVLFRDYAI 188 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~Lkp-gG~lii~~~~~ 188 (564)
.++..-+ .-.+++. ..+.|+. |-.+++-++..
T Consensus 150 Dlfy~~~--~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 150 DLFYNHT--EADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred ceecCch--HHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 9876442 3445666 5555544 44555555444
No 435
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.51 E-value=0.00077 Score=65.50 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=75.9
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCC
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 141 (564)
.+...+.+.+...++..|||||+|.|.++..|++. +.+++++|.++.+.+..+++.. ...+++++.+|+...+....
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhh-hcccceeeecchhccccHHh
Confidence 44455666666678999999999999999999999 4889999999999999998765 45789999999976654321
Q ss_pred CCCCceeEEEEcccccCCChhHHHHHHHHHHhccCC
Q 008457 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKP 177 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lkp 177 (564)
+ .+....|+++--. +++ ..++.++...-+.
T Consensus 94 ~-~~~~~~vv~NlPy-~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 94 L-KNQPLLVVGNLPY-NIS----SPILRKLLELYRF 123 (262)
T ss_dssp C-SSSEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred h-cCCceEEEEEecc-cch----HHHHHHHhhcccc
Confidence 1 2345566665433 442 3455555553333
No 436
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.001 Score=59.71 Aligned_cols=122 Identities=13% Similarity=0.072 Sum_probs=82.7
Q ss_pred hhHHHHhhhccC--CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccc
Q 008457 62 YLDKEWGRYFSG--AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDD 137 (564)
Q Consensus 62 ~~~~~~~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~ 137 (564)
.+.+.+...+.+ -.+.++||+=+|+|.++...+.++ ..+++.+|.+..+....+++..... .+.+++..|+. .-
T Consensus 28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~-~~ 105 (187)
T COG0742 28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL-RA 105 (187)
T ss_pred HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH-HH
Confidence 344444444443 679999999999999999888885 4589999999999999998876544 67788888876 22
Q ss_pred ccCCCCCCceeEEEEcccccCCChhHHHHHHHH--HHhccCCCeEEEEEec
Q 008457 138 LSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQN--IKKVLKPTGYVLFRDY 186 (564)
Q Consensus 138 ~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~--~~r~LkpgG~lii~~~ 186 (564)
+...-..+.||+|+.-=-++.- .-+....+.. -..+|+|+|.+++...
T Consensus 106 L~~~~~~~~FDlVflDPPy~~~-l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 106 LKQLGTREPFDLVFLDPPYAKG-LLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHhcCCCCcccEEEeCCCCccc-hhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 2111122359999994333311 0112233333 5688999999998643
No 437
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.51 E-value=0.00095 Score=63.98 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=81.0
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhc--CCCCCCCceEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTAN--LKPPFLAKLIT 433 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n--~~~~~~~~i~~ 433 (564)
--|=-+.++-.|.. ++..+++||||-||-..-.-..+...++++|+.+..|+.+++....- ......=.+.+
T Consensus 103 NNwIKs~LI~~y~~------~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f 176 (389)
T KOG1975|consen 103 NNWIKSVLINLYTK------RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVF 176 (389)
T ss_pred hHHHHHHHHHHHhc------cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEE
Confidence 44666766666653 56789999999996665555567789999999999999998654421 11000001222
Q ss_pred EEeecCCCccchhhhhhcCCCccEEEEece-eeC---CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 434 KRLEWGNRDHIEAIKEENNEGFEVILGTDV-SYI---PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 434 ~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~-~y~---~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
..-|.... .+..+.+..+.+||+|=+.=+ .|. .+...-+++.+...| +||| +||-+.+..
T Consensus 177 ~~~Dc~~~-~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~L-kpGG--------~FIgTiPds 240 (389)
T KOG1975|consen 177 IAADCFKE-RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCL-KPGG--------VFIGTIPDS 240 (389)
T ss_pred EEeccchh-HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhc-CCCc--------EEEEecCcH
Confidence 22222211 111112223456997654322 343 456777889999999 9998 777765543
No 438
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.50 E-value=0.00046 Score=66.29 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=75.8
Q ss_pred CCCeEEEeCCccc----HHHHHHHhcC------CCEEEEEcCChhHHHHHHHHHHh-----cCCCC---------C----
Q 008457 376 AGKKVLELGCGCG----GICSMVAAGS------ADLVVATDGDSIALDLLAQNVTA-----NLKPP---------F---- 427 (564)
Q Consensus 376 ~~~~vLelG~G~G----~l~~~~~~~~------~~~v~~tD~~~~~l~~~~~n~~~-----n~~~~---------~---- 427 (564)
..-+|.-.||+|| .+++++.... .-+|+|||+|..+|+.|+.-+-. -+++. .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4669999999999 4444444433 24899999999999999842221 11110 0
Q ss_pred -------CCceEEEEeecCCCccchhhhhhcCCCccEEEEecee--eCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 008457 428 -------LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVS--YIPEAILPLFATAKELTASSNKSLREDQQPAFIL 498 (564)
Q Consensus 428 -------~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~--y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~ 498 (564)
...|.+..++...+. ...+.||+|+|-+|+ ++...-..+++.++..| +|+| .+++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~-------~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L-~~gG--------~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDS-------PFLGKFDLIFCRNVLIYFDEETQERILRRFADSL-KPGG--------LLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCc-------cccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHh-CCCC--------EEEE
Confidence 122445444443321 134689999999985 34667889999999999 9988 7777
Q ss_pred EEeecc
Q 008457 499 CHIFRQ 504 (564)
Q Consensus 499 ~~~~r~ 504 (564)
.+...-
T Consensus 240 G~sE~~ 245 (268)
T COG1352 240 GHSETI 245 (268)
T ss_pred ccCccc
Confidence 655543
No 439
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.50 E-value=0.00099 Score=69.62 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=75.0
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
+|...+..+...+ .++.+|||++||.|+-+..+++.. ...|++.|+++.-++.+++|++.-++ .++.+...|
T Consensus 99 sS~l~~~~L~~~~--~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~----~nv~v~~~D 172 (470)
T PRK11933 99 SSMLPVAALFADD--NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV----SNVALTHFD 172 (470)
T ss_pred HHHHHHHHhccCC--CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEeCc
Confidence 4444455553332 478899999999999998888754 35899999999999999999998776 344444333
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeC--------------C--C-------ChHHHHHHHHHHhhccCC
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYI--------------P--E-------AILPLFATAKELTASSNK 486 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--------------~--~-------~~~~l~~~~~~ll~~~~g 486 (564)
-.. +....+..||.|+ .|+.-. . + .-..+++...++| +|+|
T Consensus 173 ~~~------~~~~~~~~fD~IL-vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L-kpGG 236 (470)
T PRK11933 173 GRV------FGAALPETFDAIL-LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL-KPGG 236 (470)
T ss_pred hhh------hhhhchhhcCeEE-EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc-CCCc
Confidence 111 1112245799998 222211 1 0 1256777788889 9987
No 440
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.50 E-value=0.0014 Score=64.93 Aligned_cols=129 Identities=20% Similarity=0.233 Sum_probs=94.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.+|.+|||.=+|.|.++..++.... ..|+++|++|.+++.++++...+. ..+..+++|...... .-+.+|.|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~----~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP----ELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh----ccccCCEEE
Confidence 5699999999999999999999842 239999999999999998875443 447888999864321 127899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
.+..- ....++..+.+.+++||++-+.+....+... ......+.....+.
T Consensus 262 m~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~------------------------~~~~~~i~~~~~~~ 311 (341)
T COG2520 262 MGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDDIE------------------------ERPEKRIKSAARKG 311 (341)
T ss_pred eCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhhcc------------------------cchHHHHHHHHhhc
Confidence 96642 2345788888889999999887766533210 01356777777787
Q ss_pred CCcEEE
Q 008457 232 GFDVEE 237 (564)
Q Consensus 232 Gf~~~~ 237 (564)
|++...
T Consensus 312 ~~~~~v 317 (341)
T COG2520 312 GYKVEV 317 (341)
T ss_pred cCcceE
Confidence 765443
No 441
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.0032 Score=58.28 Aligned_cols=145 Identities=22% Similarity=0.229 Sum_probs=91.4
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHH-HHHHHHHHhcCCCCCCCceEEEE
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIAL-DLLAQNVTANLKPPFLAKLITKR 435 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l-~~~~~n~~~n~~~~~~~~i~~~~ 435 (564)
+-.++..|...+....-..+++.|||+|+.||++.-.++..++++|+++|..-.-+ .-+|.+ .++.+.
T Consensus 60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d----------~rV~~~- 128 (245)
T COG1189 60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND----------PRVIVL- 128 (245)
T ss_pred cccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC----------CcEEEE-
Confidence 34568888888888777789999999999999999999999999999999854222 222222 222222
Q ss_pred eecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------
Q 008457 436 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF------------- 502 (564)
Q Consensus 436 l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~------------- 502 (564)
.=.+...+.. +.-.+..|+|+ +|+=|- ++..++..+..++ ++++ .++.-..+
T Consensus 129 -E~tN~r~l~~--~~~~~~~d~~v-~DvSFI--SL~~iLp~l~~l~-~~~~--------~~v~LvKPQFEagr~~v~kkG 193 (245)
T COG1189 129 -ERTNVRYLTP--EDFTEKPDLIV-IDVSFI--SLKLILPALLLLL-KDGG--------DLVLLVKPQFEAGREQVGKKG 193 (245)
T ss_pred -ecCChhhCCH--HHcccCCCeEE-EEeehh--hHHHHHHHHHHhc-CCCc--------eEEEEecchhhhhhhhcCcCc
Confidence 1111110100 11123678776 566554 4777788888888 7765 22222222
Q ss_pred --ccC-----ChhHHHHHHHHcCCeEEEEcCC
Q 008457 503 --RQV-----DEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 503 --r~~-----~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
|.. ....+.+.+.+.||.+..+...
T Consensus 194 vv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 194 VVRDPKLHAEVLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred eecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence 111 1135667777889999998744
No 442
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.0013 Score=59.93 Aligned_cols=147 Identities=20% Similarity=0.214 Sum_probs=96.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCC--EEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD--LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~--~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
.|++.|.+...++.-+.++.+|+||||-.|+-+-.++...+. .|+++|+.|-- . ...+.+...
T Consensus 28 RAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~----~~~V~~iq~ 92 (205)
T COG0293 28 RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------P----IPGVIFLQG 92 (205)
T ss_pred hHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------c----CCCceEEee
Confidence 466777777777754556789999999999888877776543 59999997611 0 134777888
Q ss_pred ecCCCccchhhhhh-cCCCccEEEEeceeeC------------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 437 EWGNRDHIEAIKEE-NNEGFEVILGTDVSYI------------PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 437 ~w~~~~~~~~~~~~-~~~~fD~Ii~~d~~y~------------~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
|....+..+.+... ....+|+|+ +|.--+ .......+......| +++| .|++- ..+
T Consensus 93 d~~~~~~~~~l~~~l~~~~~DvV~-sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL-~~~G--------~fv~K-~fq 161 (205)
T COG0293 93 DITDEDTLEKLLEALGGAPVDVVL-SDMAPNTSGNRSVDHARSMYLCELALEFALEVL-KPGG--------SFVAK-VFQ 161 (205)
T ss_pred eccCccHHHHHHHHcCCCCcceEE-ecCCCCcCCCccccHHHHHHHHHHHHHHHHHee-CCCC--------eEEEE-EEe
Confidence 88877766666553 344569887 454332 123344455666678 8877 55443 455
Q ss_pred cCChhHHHHHHHHcCCeEEEEcCCCCCCC
Q 008457 504 QVDEPSMLSAATQCGFRLVDKWPSKNSAS 532 (564)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 532 (564)
....+.++..++ ..|+.+++....++..
T Consensus 162 g~~~~~~l~~~~-~~F~~v~~~KP~aSR~ 189 (205)
T COG0293 162 GEDFEDLLKALR-RLFRKVKIFKPKASRK 189 (205)
T ss_pred CCCHHHHHHHHH-HhhceeEEecCccccC
Confidence 555556777664 4688777775544443
No 443
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0016 Score=65.95 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=83.1
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCC--CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCC-
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYP--DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISP- 144 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~--~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~- 144 (564)
..+.+.++.+|||+.++.|.=|.++++... +..|+++|.++.-++..+.+....+ .++.....|..... ...+.
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~--~~~~~~ 227 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA--ELLPGG 227 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccc--cccccc
Confidence 456778999999999999999999998854 4667999999999999888876555 34566666654221 11122
Q ss_pred CceeEEEE------ccccc-------CCChh-------HHHHHHHHHHhccCCCeEEEEEe
Q 008457 145 SSIDIVTM------VFVLS-------AVSPE-------KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 145 ~~fD~V~~------~~vl~-------~~~~~-------~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++||.|++ ..++. ..+.. -+..+|....++|||||.|+.++
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 35999998 22331 11111 25678999999999999999864
No 444
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.44 E-value=0.00052 Score=60.03 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=47.2
Q ss_pred eEEEeCCcccHHHHHHHhcCCC-EEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 379 KVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
.|||+|||+|..+..++..+.. +|+++|.+|.+.+.+++|+..|+.. ++.+....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~----~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP----NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC----cEEEEEeeeeC
Confidence 4899999999887777766544 8999999999999999999998763 36666666554
No 445
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.44 E-value=0.0015 Score=62.54 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=84.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
+.++||=||-|.|+....++... ..+|+++|+++.+++.+++-+..........++++..-| ...-++.....+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D-----g~~~l~~~~~~~ 150 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD-----GRKFLKETQEEK 150 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST-----HHHHHHTSSST-
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh-----hHHHHHhccCCc
Confidence 67899999999998877777654 579999999999999999876654332223456654322 222222222228
Q ss_pred ccEEEEeceeeCC-----CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh---HHHHHHHHcCCeEEEEcC
Q 008457 455 FEVILGTDVSYIP-----EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 455 fD~Ii~~d~~y~~-----~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~g~~~~~~~~ 526 (564)
||+|+. |+.-.. -.-..+++.+++.| +++| ++++-......... .....+++... ....+.
T Consensus 151 yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L-~~~G--------v~v~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~~ 219 (246)
T PF01564_consen 151 YDVIIV-DLTDPDGPAPNLFTREFYQLCKRRL-KPDG--------VLVLQAGSPFLHPELFKSILKTLRSVFP-QVKPYT 219 (246)
T ss_dssp EEEEEE-ESSSTTSCGGGGSSHHHHHHHHHHE-EEEE--------EEEEEEEETTTTHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred ccEEEE-eCCCCCCCcccccCHHHHHHHHhhc-CCCc--------EEEEEccCcccchHHHHHHHHHHHHhCC-ceEEEE
Confidence 999984 433211 12468899999999 9988 66665544443432 33455555555 444443
Q ss_pred CCCCC
Q 008457 527 SKNSA 531 (564)
Q Consensus 527 ~~~~~ 531 (564)
...|.
T Consensus 220 ~~vP~ 224 (246)
T PF01564_consen 220 AYVPS 224 (246)
T ss_dssp EECTT
T ss_pred EEcCe
Confidence 43444
No 446
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.41 E-value=0.00044 Score=63.98 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=59.3
Q ss_pred CCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHh-cCCCEEEEEcCChhHHHHHHHHHHhcC-----
Q 008457 350 CRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANL----- 423 (564)
Q Consensus 350 ~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~----- 423 (564)
....|-..+..- ++.+ +...+.++...+|||||.|-+...++. .++.+++++++.+...+.++.+.....
T Consensus 20 ~~~YGEi~~~~~---~~il-~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~ 95 (205)
T PF08123_consen 20 SETYGEISPEFV---SKIL-DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKH 95 (205)
T ss_dssp CCCGGGCHHHHH---HHHH-HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeecCHHHH---HHHH-HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHH
Confidence 345665555433 3333 223456788999999999966655554 356789999999988777765443211
Q ss_pred CCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHH
Q 008457 424 KPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPL 473 (564)
Q Consensus 424 ~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l 473 (564)
......++.....|..+.+..... -...|+|+++...|+++....|
T Consensus 96 ~g~~~~~v~l~~gdfl~~~~~~~~----~s~AdvVf~Nn~~F~~~l~~~L 141 (205)
T PF08123_consen 96 YGKRPGKVELIHGDFLDPDFVKDI----WSDADVVFVNNTCFDPDLNLAL 141 (205)
T ss_dssp CTB---EEEEECS-TTTHHHHHHH----GHC-SEEEE--TTT-HHHHHHH
T ss_pred hhcccccceeeccCccccHhHhhh----hcCCCEEEEeccccCHHHHHHH
Confidence 111124555555554433211111 1257999999998876544444
No 447
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.41 E-value=0.00063 Score=60.76 Aligned_cols=75 Identities=8% Similarity=-0.115 Sum_probs=55.0
Q ss_pred EEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhh
Q 008457 403 VATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTA 482 (564)
Q Consensus 403 ~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~ 482 (564)
+++|+|++|++.++++........ ..++.+..-|-.+. ++.+++||+|+++.++.+..+...+++.+.++|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~-~~~i~~~~~d~~~l-------p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvL- 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSC-YKCIEWIEGDAIDL-------PFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVL- 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccC-CCceEEEEechhhC-------CCCCCCeeEEEecchhhcCCCHHHHHHHHHHHc-
Confidence 479999999999987665322110 12455544433221 345678999999998988889999999999999
Q ss_pred ccCC
Q 008457 483 SSNK 486 (564)
Q Consensus 483 ~~~g 486 (564)
+|+|
T Consensus 72 kpGG 75 (160)
T PLN02232 72 KPGS 75 (160)
T ss_pred CcCe
Confidence 9988
No 448
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.41 E-value=0.00075 Score=72.61 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCccccHHHHHHhCC--------CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccC-CCCC
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYP--------DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSR-QISP 144 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~--------~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~-~~~~ 144 (564)
...+|||.|||+|.++..++.+.+ ..+++|+|+++.++..++....... ..+.+...|........ .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456999999999999988887642 2578999999999999987754332 23344444433211100 0013
Q ss_pred CceeEEEEcc
Q 008457 145 SSIDIVTMVF 154 (564)
Q Consensus 145 ~~fD~V~~~~ 154 (564)
+.||+|++|=
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 5799999953
No 449
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.40 E-value=0.00051 Score=59.89 Aligned_cols=82 Identities=20% Similarity=0.219 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHh----CCCcEEEEEeCChHHHHHHHhcccccC----CCeeEEEecCCcccccCCCCCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA----YPDVFVYACDFSPRAVNLVMTHKDFTE----TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~~iD~s~~~l~~a~~~~~~~~----~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+..+|+|+|||.|.++..|+.. .++.+|+++|.++..++.+..+..... .++.+...++.... ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 98 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-----SSD 98 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-----ccC
Confidence 67899999999999999999881 268999999999999988887654322 34555555443211 245
Q ss_pred ceeEEEEcccccCCC
Q 008457 146 SIDIVTMVFVLSAVS 160 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~ 160 (564)
..++++.-+.-.-++
T Consensus 99 ~~~~~vgLHaCG~Ls 113 (141)
T PF13679_consen 99 PPDILVGLHACGDLS 113 (141)
T ss_pred CCeEEEEeecccchH
Confidence 667777765555443
No 450
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00069 Score=60.96 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=64.5
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc-C--CCEEEEEcCChhHHHHHHHHHHhcCCC------CCCCceEEEEeecCCCccc
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG-S--ADLVVATDGDSIALDLLAQNVTANLKP------PFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~-~--~~~v~~tD~~~~~l~~~~~n~~~n~~~------~~~~~i~~~~l~w~~~~~~ 444 (564)
+.+|.+.||+|+|+|.|+..++.. + +..++++|.-+++++..++|+...--. ...+.+.+..-|-...
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g--- 156 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG--- 156 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc---
Confidence 568999999999999888877743 2 234599999999999999999875421 1123344443332211
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.-...+||.|-.. ...+.+-+.+-.-| +++|
T Consensus 157 ----~~e~a~YDaIhvG------Aaa~~~pq~l~dqL-~~gG 187 (237)
T KOG1661|consen 157 ----YAEQAPYDAIHVG------AAASELPQELLDQL-KPGG 187 (237)
T ss_pred ----CCccCCcceEEEc------cCccccHHHHHHhh-ccCC
Confidence 0123578877643 44555556666667 7766
No 451
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.38 E-value=0.0035 Score=63.32 Aligned_cols=167 Identities=17% Similarity=0.244 Sum_probs=91.0
Q ss_pred CCCeEEEEcCCccccHHHHHH--------h-------CCCcEEEEEeCChHHHHHHHhcccc--------------cCCC
Q 008457 75 GRKDVLEVGCGAGNTIFPLIA--------A-------YPDVFVYACDFSPRAVNLVMTHKDF--------------TETR 125 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~--------~-------~~~~~v~~iD~s~~~l~~a~~~~~~--------------~~~~ 125 (564)
...+|+|+|||+|.++..+.. + -|..+|..-|+-..--...-+.... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 467999999999988765532 1 1357788888644322111111110 0011
Q ss_pred eeEEEecCCcccccCCCCCCceeEEEEcccccCCCh--h----------------------------------HHHHHHH
Q 008457 126 VSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSP--E----------------------------------KMSLVLQ 169 (564)
Q Consensus 126 i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~--~----------------------------------~~~~~l~ 169 (564)
.+...-+...-...=||.++.+++++..++||++. + |...+|+
T Consensus 143 -~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~ 221 (386)
T PLN02668 143 -SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLR 221 (386)
T ss_pred -ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 12222222221222468999999999999999961 1 2334445
Q ss_pred HHHhccCCCeEEEEEecCCCchhhh------h-----hcc-cccccccceee----cCCCceeeccCHHHHHHHHHhCC-
Q 008457 170 NIKKVLKPTGYVLFRDYAIGDLAQE------R-----LTG-KDQKISENFYV----RGDGTRAFYFSNDFLTSLFKENG- 232 (564)
Q Consensus 170 ~~~r~LkpgG~lii~~~~~~~~~~~------~-----~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~aG- 232 (564)
.=.+-|.|||.+++...+..+.... . +.. +..-..++... ..-....|..+.+++++.+++.|
T Consensus 222 ~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gs 301 (386)
T PLN02668 222 ARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGS 301 (386)
T ss_pred HHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCC
Confidence 5567889999999987665321000 0 000 00000000000 01112344669999999999887
Q ss_pred CcEEEeeeee
Q 008457 233 FDVEELGLCC 242 (564)
Q Consensus 233 f~~~~~~~~~ 242 (564)
|.+.++....
T Consensus 302 F~I~~le~~~ 311 (386)
T PLN02668 302 FAIDKLEVFK 311 (386)
T ss_pred EEeeeeEEee
Confidence 6766665543
No 452
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.38 E-value=0.00052 Score=67.07 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=68.8
Q ss_pred chhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC
Q 008457 61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR 140 (564)
Q Consensus 61 ~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~ 140 (564)
..+..+..+.+...++..++|.-+|.|..+..+++..+.++|+|+|.++.+++.|+++......++.++++++....-..
T Consensus 6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHL 85 (305)
T ss_pred chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHH
Confidence 34556777777778889999999999999999999876689999999999999999877544456777777664321100
Q ss_pred -CCCCCceeEEEEcc
Q 008457 141 -QISPSSIDIVTMVF 154 (564)
Q Consensus 141 -~~~~~~fD~V~~~~ 154 (564)
.....++|.|+...
T Consensus 86 ~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 86 DELLVTKIDGILVDL 100 (305)
T ss_pred HhcCCCcccEEEEec
Confidence 11234566666644
No 453
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.35 E-value=0.0038 Score=59.57 Aligned_cols=103 Identities=9% Similarity=0.041 Sum_probs=74.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC---CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS---ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~---~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
..-+||||.||.|--..-++... ..+|.+.|+++..++..++-++.+++. +.+++...|-.+..... .+ .
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~---~i~~f~~~dAfd~~~l~---~l-~ 207 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE---DIARFEQGDAFDRDSLA---AL-D 207 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc---cceEEEecCCCCHhHhh---cc-C
Confidence 45599999999995554444432 369999999999999999999999985 44577766654433222 22 3
Q ss_pred CCccEEEEeceeeC---CCChHHHHHHHHHHhhccCC
Q 008457 453 EGFEVILGTDVSYI---PEAILPLFATAKELTASSNK 486 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~---~~~~~~l~~~~~~ll~~~~g 486 (564)
..++++|.+-++-. ...+...+.-+..++ .|+|
T Consensus 208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al-~pgG 243 (311)
T PF12147_consen 208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARAL-EPGG 243 (311)
T ss_pred CCCCEEEEecchhhCCcHHHHHHHHHHHHHHh-CCCc
Confidence 37899998876543 344667788888888 8887
No 454
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.35 E-value=0.0006 Score=66.55 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=47.0
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
...++..+||.+||.|+.+..++.... .+|+++|.++++++.+++++.. ..++.+..-+.
T Consensus 16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f 77 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNF 77 (296)
T ss_pred CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCH
Confidence 344678999999999999998888753 6899999999999999987643 14555554443
No 455
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.34 E-value=0.00045 Score=60.43 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=47.6
Q ss_pred eEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCC
Q 008457 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLI 134 (564)
Q Consensus 78 ~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~ 134 (564)
.+||||||.|.++..+++.++..+++++|+++.+.+.++++....+ .++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 4899999999999999999888899999999999999988765332 35777776664
No 456
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.0062 Score=60.86 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=75.3
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCC----------------------------------------EE
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD----------------------------------------LV 402 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~----------------------------------------~v 402 (564)
.||.-|.....-..+..++|-=||+|.+.+.++..... .+
T Consensus 178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 34544444334446679999999999999888865421 37
Q ss_pred EEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCC---------ChHHH
Q 008457 403 VATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE---------AILPL 473 (564)
Q Consensus 403 ~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------~~~~l 473 (564)
++.|+++.+++.|+.|+...+.. +.|.+...|-.+.. + +...+|+||++ +.|... .+..+
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~---d~I~f~~~d~~~l~------~-~~~~~gvvI~N-PPYGeRlg~~~~v~~LY~~f 326 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVG---DLIEFKQADATDLK------E-PLEEYGVVISN-PPYGERLGSEALVAKLYREF 326 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCC---ceEEEEEcchhhCC------C-CCCcCCEEEeC-CCcchhcCChhhHHHHHHHH
Confidence 79999999999999999999885 56777766554321 1 11589998854 566532 44556
Q ss_pred HHHHHHHh
Q 008457 474 FATAKELT 481 (564)
Q Consensus 474 ~~~~~~ll 481 (564)
.+++++.+
T Consensus 327 g~~lk~~~ 334 (381)
T COG0116 327 GRTLKRLL 334 (381)
T ss_pred HHHHHHHh
Confidence 66777777
No 457
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.32 E-value=0.0007 Score=67.21 Aligned_cols=98 Identities=20% Similarity=0.157 Sum_probs=67.1
Q ss_pred eEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEE
Q 008457 379 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI 458 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~I 458 (564)
.|||+|+|||+++.+++..++..|++++.=.-|.+++++-+..|+.+ ++|.+..-.= ..++-.+..+-|++
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S---dkI~vInkrS------tev~vg~~~RadI~ 139 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS---DKINVINKRS------TEVKVGGSSRADIA 139 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc---cceeeecccc------ceeeecCcchhhhh
Confidence 69999999998888888888889999998888999999999999986 4455442110 01111122357877
Q ss_pred EEeceee---CCCChHHHHHHHHHHhhccCC
Q 008457 459 LGTDVSY---IPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 459 i~~d~~y---~~~~~~~l~~~~~~ll~~~~g 486 (564)
+..+..- ....++.+-....+|+ +++-
T Consensus 140 v~e~fdtEligeGalps~qhAh~~L~-~~nc 169 (636)
T KOG1501|consen 140 VREDFDTELIGEGALPSLQHAHDMLL-VDNC 169 (636)
T ss_pred hHhhhhhhhhccccchhHHHHHHHhc-ccCC
Confidence 7654322 2335666666666677 6653
No 458
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.0012 Score=58.25 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEe-cCCcccc----cCCCCCCce
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVC-DLISDDL----SRQISPSSI 147 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~-d~~~~~~----~~~~~~~~f 147 (564)
.++.+|||+||..|.|+.-..++ .|...|.|+|+-+ +. ....+.++++ |+.+... ...+|+...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~-p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IE-PPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------cc-CCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 68999999999999999887777 5889999999833 22 2334555555 7765432 224578899
Q ss_pred eEEEEcccccCC--C-------hhHHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 148 DIVTMVFVLSAV--S-------PEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 148 D~V~~~~vl~~~--~-------~~~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
|+|++-+.-... . .+--..++.-....++|+|.++...|...
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 999995432211 1 11122344444567789999999877643
No 459
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.31 E-value=0.0013 Score=64.56 Aligned_cols=87 Identities=21% Similarity=0.262 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.++||+||++|.|+..|+++ +.+|++||..+ |..... ...+|.....|..... | +.+.+|+++|-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l~~~L~-----~~~~V~h~~~d~fr~~---p-~~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-MAQSLM-----DTGQVEHLRADGFKFR---P-PRKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-cCHhhh-----CCCCEEEEeccCcccC---C-CCCCCCEEEEe
Confidence 68999999999999999999998 77999999654 322221 2356777777764432 1 15789999996
Q ss_pred ccccCCChhHHHHHHHHHHhccCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPT 178 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~Lkpg 178 (564)
.+ +.+.++++-+.++|..|
T Consensus 278 mv------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 278 MV------EKPARVAELMAQWLVNG 296 (357)
T ss_pred cc------cCHHHHHHHHHHHHhcC
Confidence 65 34667777788888765
No 460
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.30 E-value=0.00098 Score=67.65 Aligned_cols=101 Identities=10% Similarity=0.121 Sum_probs=77.3
Q ss_pred CCeEEEEcCCccccHHHHHHhCCC-cEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~-~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
+.+|||+.||+|..+..++.+.++ .+|+++|+++.+++.++++..... .++++.+.|+..... .....||+|..-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~---~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR---YRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH---HhCCCCCEEEeC
Confidence 468999999999999999987433 589999999999999998875443 357788888754311 123579999884
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
- + . .+..++..+.+.+++||.++++.
T Consensus 122 P-f-G----s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 P-F-G----TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-C-C----CcHHHHHHHHHhcccCCEEEEEe
Confidence 3 2 2 23468999999999999999973
No 461
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.30 E-value=0.00049 Score=69.80 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=49.0
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLIS 135 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~ 135 (564)
+.+|||++||+|.++..|++.. .+|+|+|+++.+++.|+++....+ .+++++.+|+..
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 3579999999999999998874 489999999999999998875443 368999999854
No 462
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.30 E-value=0.0004 Score=62.81 Aligned_cols=76 Identities=14% Similarity=0.261 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
....|+|.-||.|..+..++.+ ++.|+++|++|.-+..|+.+.+-- +.+|.|+++|+.+.--.+.+....+|+|..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 5678999999999999999998 677999999999999999886532 368999999986532222233334555555
No 463
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.27 E-value=0.0027 Score=58.78 Aligned_cols=131 Identities=14% Similarity=0.109 Sum_probs=81.9
Q ss_pred CCeEEEeCCcccHHHHHHHh--cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 377 GKKVLELGCGCGGICSMVAA--GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~--~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
+.+++|+|+|.| ++++-++ ....+|+.+|-...=+..++.-...-++ .++.+..-.-. .+. ...+
T Consensus 68 ~~~~~DIGSGaG-fPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L----~nv~i~~~RaE------~~~--~~~~ 134 (215)
T COG0357 68 AKRVLDIGSGAG-FPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL----ENVEIVHGRAE------EFG--QEKK 134 (215)
T ss_pred CCEEEEeCCCCC-CchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC----CCeEEehhhHh------hcc--cccc
Confidence 689999999999 6655544 3345799999887666666655554444 23444322211 111 1113
Q ss_pred -ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh-hHHHHHHHHcCCeEEEEcCCCCCCC
Q 008457 455 -FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-PSMLSAATQCGFRLVDKWPSKNSAS 532 (564)
Q Consensus 455 -fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~ 532 (564)
||+|.+-- ...+..++..+..++ +++| .++...-....++ ......+...|+.++.+.....|..
T Consensus 135 ~~D~vtsRA----va~L~~l~e~~~pll-k~~g--------~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~ 201 (215)
T COG0357 135 QYDVVTSRA----VASLNVLLELCLPLL-KVGG--------GFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPEL 201 (215)
T ss_pred cCcEEEeeh----ccchHHHHHHHHHhc-ccCC--------cchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCC
Confidence 99997544 456888999999999 8877 3322222222222 3566777788999999986655555
Q ss_pred C
Q 008457 533 P 533 (564)
Q Consensus 533 ~ 533 (564)
.
T Consensus 202 ~ 202 (215)
T COG0357 202 D 202 (215)
T ss_pred C
Confidence 3
No 464
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.26 E-value=0.0035 Score=58.86 Aligned_cols=110 Identities=9% Similarity=0.014 Sum_probs=74.2
Q ss_pred CeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC-Cc
Q 008457 378 KKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE-GF 455 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~-~f 455 (564)
..+||||||.|......|...+ ..++++|+....+..+.+-+...++. ++.+...| ..+-+..+.+. +.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~----Nlri~~~D-----A~~~l~~~~~~~sl 120 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK----NLRLLCGD-----AVEVLDYLIPDGSL 120 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC----cEEEEcCC-----HHHHHHhcCCCCCe
Confidence 5899999999988777777654 58999999888888887777776652 45554332 12222223344 88
Q ss_pred cEEEEe-ceeeCCC-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC
Q 008457 456 EVILGT-DVSYIPE-------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV 505 (564)
Q Consensus 456 D~Ii~~-d~~y~~~-------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~ 505 (564)
|-|... .-.+... ..+.+++.+++.| +++| .+.+++-....
T Consensus 121 ~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~L-k~gG--------~l~~aTD~~~y 169 (227)
T COG0220 121 DKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKL-KPGG--------VLHFATDNEEY 169 (227)
T ss_pred eEEEEECCCCCCCccccccccCCHHHHHHHHHHc-cCCC--------EEEEEecCHHH
Confidence 877522 1122211 4689999999999 9988 88877555443
No 465
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.26 E-value=0.0017 Score=60.81 Aligned_cols=100 Identities=19% Similarity=0.260 Sum_probs=67.2
Q ss_pred ccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceE
Q 008457 353 TGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 432 (564)
Q Consensus 353 ~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~ 432 (564)
.|.++-.-+.++...+ ....+-+...|||+|-|||.+.-.++.. +++|+|++++|.++..+++.+..-.. .++++
T Consensus 36 ~GQHilkNp~v~~~I~-~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~---~~kLq 110 (315)
T KOG0820|consen 36 FGQHILKNPLVIDQIV-EKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPK---SGKLQ 110 (315)
T ss_pred cchhhhcCHHHHHHHH-hccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCc---cceee
Confidence 3444443344444443 3345568889999999999888777765 56899999999999999987754332 36777
Q ss_pred EEEeecCCCccchhhhhhcCCCccEEEEeceeeCC
Q 008457 433 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP 467 (564)
Q Consensus 433 ~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~ 467 (564)
+..-|.-+.+ ...||++|+ .+.|..
T Consensus 111 V~~gD~lK~d---------~P~fd~cVs-NlPyqI 135 (315)
T KOG0820|consen 111 VLHGDFLKTD---------LPRFDGCVS-NLPYQI 135 (315)
T ss_pred EEecccccCC---------Ccccceeec-cCCccc
Confidence 7776665442 237888774 344443
No 466
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.22 E-value=0.0031 Score=57.71 Aligned_cols=140 Identities=16% Similarity=0.089 Sum_probs=88.0
Q ss_pred hhHHHHHHHHhcCCCCC----CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEE
Q 008457 359 ESAHLMAAVLARNPTIV----AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK 434 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~----~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~ 434 (564)
+++..|.+||....... ...++||+||=+.-.... ....-.|+.+|+++.- -.+.
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~-------------------~~I~ 88 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQH-------------------PGIL 88 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCCC-------------------CCce
Confidence 57888999998743222 235999999974311111 1122369999997510 0112
Q ss_pred EeecCCCccchhhhhhcCCCccEEEEeceeeCC---CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee------ccC
Q 008457 435 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP---EAILPLFATAKELTASSNKSLREDQQPAFILCHIF------RQV 505 (564)
Q Consensus 435 ~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~------r~~ 505 (564)
.-|+-+-... ....++||+|..+=|+-.. ..--.+++.+.++| +++|. ..-|.+++..+. |..
T Consensus 89 qqDFm~rplp----~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL-~~~g~---~~~~~LFlVlP~~Cv~NSRy~ 160 (219)
T PF11968_consen 89 QQDFMERPLP----KNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFL-KPPGL---SLFPSLFLVLPLPCVTNSRYM 160 (219)
T ss_pred eeccccCCCC----CCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHh-CCCCc---cCcceEEEEeCchHhhccccc
Confidence 2233222111 1135699999999887653 45668999999999 98871 112346665554 455
Q ss_pred ChhHHHHHHHHcCCeEEEEcCC
Q 008457 506 DEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 506 ~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
+...|.+.+...||...+....
T Consensus 161 ~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 161 TEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred CHHHHHHHHHhCCcEEEEEEec
Confidence 6678899999999999987543
No 467
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.21 E-value=0.0024 Score=59.16 Aligned_cols=120 Identities=15% Similarity=0.142 Sum_probs=75.0
Q ss_pred EEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC-ccE
Q 008457 380 VLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG-FEV 457 (564)
Q Consensus 380 vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~-fD~ 457 (564)
|.|+||--|.++..++..+. .+|+++|+++.-++.+++|+..+++. +++.++.-| -++ .+.++. .|+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~---~~i~~rlgd-----GL~---~l~~~e~~d~ 69 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE---DRIEVRLGD-----GLE---VLKPGEDVDT 69 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T---TTEEEEE-S-----GGG---G--GGG---E
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc---ccEEEEECC-----ccc---ccCCCCCCCE
Confidence 68999999999999998875 48999999999999999999998875 567766443 122 233333 788
Q ss_pred EEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEE
Q 008457 458 ILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 458 Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
|+.|-+--. ....++......+ +. ...++++-.. ....+..++.+.||.+.+-
T Consensus 70 ivIAGMGG~--lI~~ILe~~~~~~-~~--------~~~lILqP~~---~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 70 IVIAGMGGE--LIIEILEAGPEKL-SS--------AKRLILQPNT---HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp EEEEEE-HH--HHHHHHHHTGGGG-TT----------EEEEEESS----HHHHHHHHHHTTEEEEEE
T ss_pred EEEecCCHH--HHHHHHHhhHHHh-cc--------CCeEEEeCCC---ChHHHHHHHHHCCCEEEEe
Confidence 887654321 2223333332222 11 2367776332 2345788888999998764
No 468
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.20 E-value=0.0014 Score=59.06 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=82.7
Q ss_pred ceechhHH--HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceE
Q 008457 355 LMLWESAH--LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 432 (564)
Q Consensus 355 ~~~W~~~~--~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~ 432 (564)
+.-|+.-+ .+|+-+. .+|.+||++|=|.|.+...+-.....+-+.++.+|++++.++.+.-.. .+++.
T Consensus 83 Mm~WEtpiMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-----k~nVi 152 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-----KENVI 152 (271)
T ss_pred hhhhhhHHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-----ccceE
Confidence 56676654 3444443 488999999999995555555556677788999999999888874332 35677
Q ss_pred EEEeecCCCccchhhhhhcCCCccEEEEecee-eCCCChHHHHHHHHHHhhccCC
Q 008457 433 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVS-YIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 433 ~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~-y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+..-.|.+. + ..++++.||-|. -|+. -.-+++-.+.+.+-+|| ||+|
T Consensus 153 il~g~WeDv--l---~~L~d~~FDGI~-yDTy~e~yEdl~~~hqh~~rLL-kP~g 200 (271)
T KOG1709|consen 153 ILEGRWEDV--L---NTLPDKHFDGIY-YDTYSELYEDLRHFHQHVVRLL-KPEG 200 (271)
T ss_pred EEecchHhh--h---ccccccCcceeE-eechhhHHHHHHHHHHHHhhhc-CCCc
Confidence 778889753 2 246778899876 4544 34456777888999999 9988
No 469
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.20 E-value=0.00073 Score=64.39 Aligned_cols=143 Identities=13% Similarity=0.081 Sum_probs=84.2
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCC-------------CCCC-----------
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLK-------------PPFL----------- 428 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~-------------~~~~----------- 428 (564)
...+|.++||+|||.-....+.+.....+|+++|+.+.-++.+++=+...+. ....
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3447889999999997555555556778999999999888777654433211 0000
Q ss_pred CceE-EEEeecCCCccchhhhhhcCCCccEEEEeceee----CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 429 AKLI-TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY----IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 429 ~~i~-~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y----~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
..|+ +..-|..+...+..... .+.+||+|+++=|+- +.+.+...++.+.++| |||| .++++...+
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~-~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lL-kpGG--------~Lil~~~l~ 202 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVV-LPPKFDCVISSFCLESACKDLDEYRRALRNISSLL-KPGG--------HLILAGVLG 202 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-S-S-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTE-EEEE--------EEEEEEESS
T ss_pred HhhceEEEeeccCCCCCCcccc-CccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHc-CCCc--------EEEEEEEcC
Confidence 1122 22233333322211000 123699999886664 3456777888888899 9988 555544431
Q ss_pred --------------cCChhHHHHHHHHcCCeEEEEc
Q 008457 504 --------------QVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 504 --------------~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
..++....+.+.++||.+++.-
T Consensus 203 ~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 203 STYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp -SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ceeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 2234456788899999998876
No 470
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.18 E-value=0.011 Score=58.28 Aligned_cols=84 Identities=14% Similarity=0.264 Sum_probs=55.3
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEE---eecCCCccchhhhhh
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR---LEWGNRDHIEAIKEE 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~---l~w~~~~~~~~~~~~ 450 (564)
+.+|.++|||||++|+.+..++..+. +|+++|..+ +- .++..+ ++|.... +.|..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~~------~~V~h~~~d~fr~~p---------- 266 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMDT------GQVEHLRADGFKFRP---------- 266 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhCC------CCEEEEeccCcccCC----------
Confidence 46899999999999999998888776 899999754 22 222221 2333332 22211
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhcc
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASS 484 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~ 484 (564)
..+.+|+|+ +|++-.+. .+.+.+..+| ..
T Consensus 267 ~~~~vDwvV-cDmve~P~---rva~lm~~Wl-~~ 295 (357)
T PRK11760 267 PRKNVDWLV-CDMVEKPA---RVAELMAQWL-VN 295 (357)
T ss_pred CCCCCCEEE-EecccCHH---HHHHHHHHHH-hc
Confidence 146899876 78886544 5667777788 44
No 471
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.16 E-value=0.0026 Score=68.50 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=39.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC---------CCEEEEEcCChhHHHHHHHHHHhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS---------ADLVVATDGDSIALDLLAQNVTANL 423 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~---------~~~v~~tD~~~~~l~~~~~n~~~n~ 423 (564)
...+|||.|||+|++...++... ...+++.|+++.++..++.|+...+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 45699999999998887766432 1479999999999999999987654
No 472
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.14 E-value=0.011 Score=57.59 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=68.0
Q ss_pred CeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 378 KKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
++||-||-|.|+....++... ..+++++|+++.+++.+++-+..-.......++++..-| ..+-+.. ...+||
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D-----g~~~v~~-~~~~fD 151 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD-----GVEFLRD-CEEKFD 151 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc-----HHHHHHh-CCCcCC
Confidence 699999999998888888765 579999999999999999866543211112444444221 2222222 233899
Q ss_pred EEEEeceeeCCCC------hHHHHHHHHHHhhccCC
Q 008457 457 VILGTDVSYIPEA------ILPLFATAKELTASSNK 486 (564)
Q Consensus 457 ~Ii~~d~~y~~~~------~~~l~~~~~~ll~~~~g 486 (564)
+|| .|+.-. .. -..+.+.++++| +++|
T Consensus 152 vIi-~D~tdp-~gp~~~Lft~eFy~~~~~~L-~~~G 184 (282)
T COG0421 152 VII-VDSTDP-VGPAEALFTEEFYEGCRRAL-KEDG 184 (282)
T ss_pred EEE-EcCCCC-CCcccccCCHHHHHHHHHhc-CCCc
Confidence 998 343222 22 378899999999 9988
No 473
>PRK11524 putative methyltransferase; Provisional
Probab=97.14 E-value=0.035 Score=54.66 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHh
Q 008457 362 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTA 421 (564)
Q Consensus 362 ~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~ 421 (564)
..|.+.+..... .+|..|||--||+| -.+.+|.+...+.+++|++++.++.+++.+..
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSG-TT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSF-TTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCc-HHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 344555444322 38899999999999 77777777888999999999999999988754
No 474
>PRK10742 putative methyltransferase; Provisional
Probab=97.11 E-value=0.0018 Score=60.85 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=66.7
Q ss_pred CCCC--eEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCC-----CceEEEEeecCCCccchhh
Q 008457 375 VAGK--KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFL-----AKLITKRLEWGNRDHIEAI 447 (564)
Q Consensus 375 ~~~~--~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~-----~~i~~~~l~w~~~~~~~~~ 447 (564)
.++. +|||+-||+|..+..++..++. |+++|.++.+..+++.|+......... .++.+.. .+..+.+
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~-----~da~~~L 158 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH-----ASSLTAL 158 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe-----CcHHHHH
Confidence 3445 8999999999998888888765 999999999999999999874211100 2233322 2233333
Q ss_pred hhhcCCCccEEEEeceeeCCCChHHHHHHHHHHh
Q 008457 448 KEENNEGFEVILGTDVSYIPEAILPLFATAKELT 481 (564)
Q Consensus 448 ~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll 481 (564)
... ...||+|. .|..|-......+.+.=-+++
T Consensus 159 ~~~-~~~fDVVY-lDPMfp~~~ksa~vkk~mr~~ 190 (250)
T PRK10742 159 TDI-TPRPQVVY-LDPMFPHKQKSALVKKEMRVF 190 (250)
T ss_pred hhC-CCCCcEEE-ECCCCCCCccccchhhhHHHH
Confidence 332 34799876 899998776666544444444
No 475
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0023 Score=60.84 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=60.4
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.+.+.......++.+|||||+|.|.++..++..+ ++|+++++|+.+++.+++.... .+++.+..-|--+.+.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d~- 90 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-ARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFDF- 90 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCcc-
Confidence 4444454555568899999999999998888765 4699999999999999887651 1445555444332211
Q ss_pred hhhhhhcCCCccEEEEeceeeCCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPE 468 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~ 468 (564)
.. +. .++.|+ +.+.|+..
T Consensus 91 ~~---l~--~~~~vV-aNlPY~Is 108 (259)
T COG0030 91 PS---LA--QPYKVV-ANLPYNIS 108 (259)
T ss_pred hh---hc--CCCEEE-EcCCCccc
Confidence 10 00 567776 55677755
No 476
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.10 E-value=0.015 Score=53.52 Aligned_cols=155 Identities=20% Similarity=0.267 Sum_probs=92.2
Q ss_pred CccceechhHH-HHHHHHhcC---CCCCCCCeEEEeCCcccHHHHHHHhc-C-CCEEEEEcCChhHHHHHHHHHHhcCCC
Q 008457 352 STGLMLWESAH-LMAAVLARN---PTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKP 425 (564)
Q Consensus 352 ~~G~~~W~~~~-~l~~~l~~~---~~~~~~~~vLelG~G~G~l~~~~~~~-~-~~~v~~tD~~~~~l~~~~~n~~~n~~~ 425 (564)
..+.++|+.-+ .||..++.. ..+.+|.+||=||+++|...+.++-. + ...|.+++.++...+-+-. +....
T Consensus 45 ~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~-la~~R-- 121 (229)
T PF01269_consen 45 KVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLN-LAKKR-- 121 (229)
T ss_dssp -EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH-HHHHS--
T ss_pred ccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHH-HhccC--
Confidence 34678896643 566666543 45668999999999999777777764 3 4589999999966543332 22111
Q ss_pred CCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC
Q 008457 426 PFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV 505 (564)
Q Consensus 426 ~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~ 505 (564)
.+|-..- ++.........+. +.+|+|+ +|+- .+....-++......| +++| .++++.+.|..
T Consensus 122 ---~NIiPIl---~DAr~P~~Y~~lv-~~VDvI~-~DVa-Qp~Qa~I~~~Na~~fL-k~gG--------~~~i~iKa~si 183 (229)
T PF01269_consen 122 ---PNIIPIL---EDARHPEKYRMLV-EMVDVIF-QDVA-QPDQARIAALNARHFL-KPGG--------HLIISIKARSI 183 (229)
T ss_dssp ---TTEEEEE---S-TTSGGGGTTTS---EEEEE-EE-S-STTHHHHHHHHHHHHE-EEEE--------EEEEEEEHHHH
T ss_pred ---Cceeeee---ccCCChHHhhccc-ccccEEE-ecCC-ChHHHHHHHHHHHhhc-cCCc--------EEEEEEecCcc
Confidence 1222111 1111222222222 3677655 5654 5678888999999999 9988 88888888754
Q ss_pred Ch-----hHH---HHHHHHcCCeEEEEcCC
Q 008457 506 DE-----PSM---LSAATQCGFRLVDKWPS 527 (564)
Q Consensus 506 ~~-----~~~---~~~~~~~g~~~~~~~~~ 527 (564)
+. .-| .+.+++.||++.+....
T Consensus 184 D~t~~p~~vf~~e~~~L~~~~~~~~e~i~L 213 (229)
T PF01269_consen 184 DSTADPEEVFAEEVKKLKEEGFKPLEQITL 213 (229)
T ss_dssp -SSSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCChheEecc
Confidence 32 123 46666779999887643
No 477
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.09 E-value=0.0024 Score=62.64 Aligned_cols=114 Identities=19% Similarity=0.188 Sum_probs=82.8
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+.+.++.+|||+.++.|.=+.++++... ...+++.|+++.-+...+.+....+ .++.....|...... ......|
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~--~~~~~~f 157 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDP--KKPESKF 157 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHH--HHHTTTE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccc--ccccccc
Confidence 45668999999999999999999998854 6799999999999998888765444 456666666654311 1123469
Q ss_pred eEEEE---cc---cccCCCh--------------hHHHHHHHHHHhcc----CCCeEEEEEe
Q 008457 148 DIVTM---VF---VLSAVSP--------------EKMSLVLQNIKKVL----KPTGYVLFRD 185 (564)
Q Consensus 148 D~V~~---~~---vl~~~~~--------------~~~~~~l~~~~r~L----kpgG~lii~~ 185 (564)
|.|++ +. ++..-+. .....+|+.+.+.+ ||||+++.++
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 99998 22 2222211 12457899999999 9999999864
No 478
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.08 E-value=0.0029 Score=61.12 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=99.5
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc----cCCCeeEEEecCCcccccC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF----TETRVSTFVCDLISDDLSR 140 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~----~~~~i~~~~~d~~~~~~~~ 140 (564)
..+.+.+. .....|+.+|||-=.-...+.. .++.+++=+|. |+.++.-++.... ...+..++.+|+. .++..
T Consensus 72 ~~i~~~~~-~g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~ 147 (260)
T TIGR00027 72 DFLLAAVA-AGIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPA 147 (260)
T ss_pred HHHHHHHh-cCCcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHH
Confidence 33334443 2345799999987655544422 12566777776 4555544444332 3467788888886 33322
Q ss_pred -----CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhh-hhcccccccccceeecCCCc
Q 008457 141 -----QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE-RLTGKDQKISENFYVRGDGT 214 (564)
Q Consensus 141 -----~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 214 (564)
++..+.--++++-.++.+++++....+|+.+.+...||+.+++.....-..... ........... ......
T Consensus 148 ~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 224 (260)
T TIGR00027 148 ALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAAR---GVDGSG 224 (260)
T ss_pred HHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhh---cccccc
Confidence 233334457888889999999999999999999988999988865443111000 00000000000 001112
Q ss_pred eeeccCHHHHHHHHHhCCCcEEEe
Q 008457 215 RAFYFSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 215 ~~~~~~~~~l~~~l~~aGf~~~~~ 238 (564)
..+.++++++..+|.+.||.....
T Consensus 225 ~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 225 LVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred cccCCChhhHHHHHHHCCCeeecC
Confidence 233568999999999999998654
No 479
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.07 E-value=0.003 Score=59.27 Aligned_cols=93 Identities=22% Similarity=0.352 Sum_probs=67.0
Q ss_pred hhHHHHhhhccC-CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC
Q 008457 62 YLDKEWGRYFSG-AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR 140 (564)
Q Consensus 62 ~~~~~~~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~ 140 (564)
.+...+.+.+.. .++.+|+|||||.--++.......++..++|+|++..+++.........+.+.++...|+...
T Consensus 91 ~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~---- 166 (251)
T PF07091_consen 91 NLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD---- 166 (251)
T ss_dssp GHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS----
T ss_pred hHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc----
Confidence 344444444443 458999999999999888877777788999999999999999887766667788888888653
Q ss_pred CCCCCceeEEEEcccccCC
Q 008457 141 QISPSSIDIVTMVFVLSAV 159 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~ 159 (564)
.+....|+.+..=+++.+
T Consensus 167 -~~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 167 -PPKEPADLALLLKTLPCL 184 (251)
T ss_dssp -HTTSEESEEEEET-HHHH
T ss_pred -CCCCCcchhhHHHHHHHH
Confidence 256789999998888877
No 480
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.07 E-value=0.009 Score=58.33 Aligned_cols=131 Identities=15% Similarity=0.085 Sum_probs=73.0
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
.+...+|||+|||+| .+..++.. ...+++++|.|+.++++++.=+.. .... . ...|... .... ..
T Consensus 31 ~f~P~~vLD~GsGpG-ta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~-~~~~--~-----~~~~~~~-~~~~--~~ 98 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPG-TALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA-GPNN--R-----NAEWRRV-LYRD--FL 98 (274)
T ss_pred CCCCceEEEecCChH-HHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc-cccc--c-----cchhhhh-hhcc--cc
Confidence 467889999999998 55555542 245899999999999988874332 2211 0 0112111 0000 01
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeEEEEc
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~~~~~ 525 (564)
.....|+|+++-++-.-.. ....+.+..+..+. .+.+++.-+-...+- ....+.+.+.|+.+.--.
T Consensus 99 ~~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~--------~~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~APC 167 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPS-AARAELVRSLWNKT--------APVLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAPC 167 (274)
T ss_pred cCCCCcEEEEehhhhcCCc-hHHHHHHHHHHHhc--------cCcEEEEcCCChHHHHHHHHHHHHHhhCCCceECCC
Confidence 1223499999988877555 55555555554111 124444433322221 234455566777776544
No 481
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.01 Score=55.72 Aligned_cols=138 Identities=11% Similarity=0.066 Sum_probs=86.5
Q ss_pred HhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccch
Q 008457 368 LARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE 445 (564)
Q Consensus 368 l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~ 445 (564)
+....+..+|.+|||-|+|+|.++-+++..- ..+++-.|....-.+.+++-....+.. +.+.+..-|.......
T Consensus 97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~---~~vt~~hrDVc~~GF~- 172 (314)
T KOG2915|consen 97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG---DNVTVTHRDVCGSGFL- 172 (314)
T ss_pred HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC---cceEEEEeecccCCcc-
Confidence 3334466789999999999998886666542 358999999887777777777777764 5677777766543211
Q ss_pred hhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 446 AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 446 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.....+|.|. -|+.--++ .+-.+...| +.+| .-++++..--+-.+.-.++++++||--++..
T Consensus 173 ----~ks~~aDaVF-LDlPaPw~----AiPha~~~l-k~~g--------~r~csFSPCIEQvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 173 ----IKSLKADAVF-LDLPAPWE----AIPHAAKIL-KDEG--------GRLCSFSPCIEQVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred ----ccccccceEE-EcCCChhh----hhhhhHHHh-hhcC--------ceEEeccHHHHHHHHHHHHHHhCCCceEEEE
Confidence 1134566553 34433333 334444478 7666 3444444432223456788888888766665
Q ss_pred CC
Q 008457 526 PS 527 (564)
Q Consensus 526 ~~ 527 (564)
++
T Consensus 235 Ev 236 (314)
T KOG2915|consen 235 EV 236 (314)
T ss_pred Ee
Confidence 54
No 482
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.05 E-value=0.0016 Score=66.06 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=47.3
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDL 133 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~ 133 (564)
.+.+...++ +|||+-||.|.++..|+.. ..+|+|+|.++.+++.|+.+....+ .+++|+..++
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 344554444 8999999999999999988 5789999999999999998876544 6789988765
No 483
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.04 E-value=0.00034 Score=57.68 Aligned_cols=99 Identities=25% Similarity=0.258 Sum_probs=43.7
Q ss_pred EEEcCCccccHHHHHHhCCC---cEEEEEeCChH---HHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 80 LEVGCGAGNTIFPLIAAYPD---VFVYACDFSPR---AVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 80 LDiGcG~G~~~~~l~~~~~~---~~v~~iD~s~~---~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
||||+..|..+..+++..+. .+++++|..+. ..+..++ .....+++++.++.... ++ .++.+++|+|+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~-l~-~~~~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDF-LP-SLPDGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHH-HH-HHHH--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHH-HH-HcCCCCEEEEEEC
Confidence 68999999998888775322 37999999994 3333333 12235689999987432 11 2335789999995
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.. |. .+.....++.+.+.|+|||.+++-+
T Consensus 77 g~--H~-~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 77 GD--HS-YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp S------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--CC-HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 53 32 1467778999999999999998753
No 484
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.04 E-value=0.002 Score=65.94 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=64.9
Q ss_pred CeEEEeCCcccHHHHHHHhcCCCEE--EEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 378 KKVLELGCGCGGICSMVAAGSADLV--VATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~~~~v--~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
..+||+|||+|.+++.++.++.-.+ ..-|..+..++.+.+. +++...+.+. ..-.+++++.|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~~~------------s~rLPfp~~~f 182 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER----GVPAMIGVLG------------SQRLPFPSNAF 182 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc----Ccchhhhhhc------------cccccCCccch
Confidence 3799999999999998887764321 1223333334443322 2221111110 11126788899
Q ss_pred cEEEEeceeeCCCCh-HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc
Q 008457 456 EVILGTDVSYIPEAI-LPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~-~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
|+|-++.|+-..... .-++-.+.|+| +|+| .++++.+.-.
T Consensus 183 DmvHcsrc~i~W~~~~g~~l~evdRvL-RpGG--------yfv~S~ppv~ 223 (506)
T PF03141_consen 183 DMVHCSRCLIPWHPNDGFLLFEVDRVL-RPGG--------YFVLSGPPVY 223 (506)
T ss_pred hhhhcccccccchhcccceeehhhhhh-ccCc--------eEEecCCccc
Confidence 999999988664332 45788999999 9998 8888887643
No 485
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0071 Score=54.29 Aligned_cols=108 Identities=20% Similarity=0.352 Sum_probs=77.3
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
++..++.+||=+|+.+|....+.+.-.+...++|+++|+......-..... ..|+--+..|+....-...+ -+..|+|
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-R~Ni~PIL~DA~~P~~Y~~~-Ve~VDvi 149 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-RPNIIPILEDARKPEKYRHL-VEKVDVI 149 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-CCCceeeecccCCcHHhhhh-cccccEE
Confidence 445899999999999999999999887678899999999765433322221 24566677887653322222 2458998
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+.--+ .++...-+..++...||+||.+++.
T Consensus 150 y~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 150 YQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 88322 2356777889999999999977774
No 486
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.95 E-value=0.0095 Score=54.51 Aligned_cols=126 Identities=12% Similarity=0.183 Sum_probs=93.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCC-CCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI-SPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~-~~~~fD~V 150 (564)
..+.++.||||--|++...|.+.++...+++.|+++..++.|.++..... .+++..++|... ++ ++..+|+|
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-----~l~~~d~~d~i 89 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-----VLELEDEIDVI 89 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-----ccCccCCcCEE
Confidence 34556999999999999999999888899999999999999998876543 567777777632 23 34478998
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHh
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 230 (564)
+...+=. ..+..+|.+-.+.|+.=-.+++. ++ -...++++++..
T Consensus 90 vIAGMGG----~lI~~ILee~~~~l~~~~rlILQ-Pn-------------------------------~~~~~LR~~L~~ 133 (226)
T COG2384 90 VIAGMGG----TLIREILEEGKEKLKGVERLILQ-PN-------------------------------IHTYELREWLSA 133 (226)
T ss_pred EEeCCcH----HHHHHHHHHhhhhhcCcceEEEC-CC-------------------------------CCHHHHHHHHHh
Confidence 8865422 35677788887777643344442 11 147889999999
Q ss_pred CCCcEEEeee
Q 008457 231 NGFDVEELGL 240 (564)
Q Consensus 231 aGf~~~~~~~ 240 (564)
.+|.+..-..
T Consensus 134 ~~~~I~~E~i 143 (226)
T COG2384 134 NSYEIKAETI 143 (226)
T ss_pred CCceeeeeee
Confidence 9999876444
No 487
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.0069 Score=56.08 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=88.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++..+||||+.||.|+..+++.+ ..+|+++|..-..++.--+. .+.-+-+...++..... ..+ .+..|+++|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~---d~rV~~~E~tN~r~l~~-~~~-~~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRN---DPRVIVLERTNVRYLTP-EDF-TEKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhc---CCcEEEEecCChhhCCH-HHc-ccCCCeEEEE
Confidence 689999999999999999999884 45899999988665443222 11122334445432211 111 2367899996
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
-++. .+..+|..+..+++|+|.++...-. ..... ...+...=..... ..+---...+.+++++.||
T Consensus 152 vSFI-----SL~~iLp~l~~l~~~~~~~v~LvKP--QFEag-----r~~v~kkGvv~d~--~~~~~v~~~i~~~~~~~g~ 217 (245)
T COG1189 152 VSFI-----SLKLILPALLLLLKDGGDLVLLVKP--QFEAG-----REQVGKKGVVRDP--KLHAEVLSKIENFAKELGF 217 (245)
T ss_pred eehh-----hHHHHHHHHHHhcCCCceEEEEecc--hhhhh-----hhhcCcCceecCc--chHHHHHHHHHHHHhhcCc
Confidence 6544 3567899999999999988774311 11000 0000000000000 1111235778889999999
Q ss_pred cEEEeeee
Q 008457 234 DVEELGLC 241 (564)
Q Consensus 234 ~~~~~~~~ 241 (564)
.+..+...
T Consensus 218 ~~~gl~~S 225 (245)
T COG1189 218 QVKGLIKS 225 (245)
T ss_pred EEeeeEcc
Confidence 98765443
No 488
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.81 E-value=0.0024 Score=63.95 Aligned_cols=106 Identities=19% Similarity=0.162 Sum_probs=63.4
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhc--------CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAG--------SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~--------~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
....+.+|+|-.||+|++...+... ...++++.|+++.++.+++.|+..++... ....+..-|.-..+.
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~--~~~~i~~~d~l~~~~- 119 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN--SNINIIQGDSLENDK- 119 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC--BGCEEEES-TTTSHS-
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc--ccccccccccccccc-
Confidence 4446779999999999887666542 45689999999999999999998876532 122233333221111
Q ss_pred hhhhhhcCCCccEEEEeceeeCC---------------------CChHHHHHHHHHHhhccCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYIP---------------------EAILPLFATAKELTASSNK 486 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~---------------------~~~~~l~~~~~~ll~~~~g 486 (564)
.....+||+||++.+.-.. ..--.++..+-..| +++|
T Consensus 120 ----~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L-k~~G 177 (311)
T PF02384_consen 120 ----FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLL-KPGG 177 (311)
T ss_dssp ----CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTE-EEEE
T ss_pred ----cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhc-cccc
Confidence 0124689999987542111 01124677777888 8877
No 489
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.80 E-value=0.0083 Score=55.19 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=70.3
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh-hh
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI-KE 449 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~-~~ 449 (564)
+...+++||||.=|| .+.++.+. ...+|+++|+++...+....-++..+.. ++|.+..-.-. +.++++ ..
T Consensus 71 ~~~ak~~lelGvfTG-ySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~---~KI~~i~g~a~--esLd~l~~~ 144 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTG-YSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD---HKITFIEGPAL--ESLDELLAD 144 (237)
T ss_pred HhCCceEEEEecccC-HHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc---ceeeeeecchh--hhHHHHHhc
Confidence 347889999999998 44443332 3569999999999999998877777765 45555543221 122222 23
Q ss_pred hcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 450 ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 450 ~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
...+.||+++. | -+..........+-+|+ ++||
T Consensus 145 ~~~~tfDfaFv-D--adK~nY~~y~e~~l~Ll-r~GG 177 (237)
T KOG1663|consen 145 GESGTFDFAFV-D--ADKDNYSNYYERLLRLL-RVGG 177 (237)
T ss_pred CCCCceeEEEE-c--cchHHHHHHHHHHHhhc-cccc
Confidence 46779999872 2 23445557788888999 9887
No 490
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.80 E-value=0.0039 Score=60.63 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=66.7
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
+++-+.+.....++..|||+|+|+|.++..++..+ ++|+++|.++...+.+++.... ..++.+..-|..+.+.
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~------~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS------NPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT------CSSEEEEES-TTTSCG
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh------cccceeeecchhcccc
Confidence 34445444445588999999999999999888776 8999999999999999987652 2567777666554322
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHH
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKE 479 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ 479 (564)
... .......|+++ +.|+. -.+++..+-.
T Consensus 91 ~~~----~~~~~~~vv~N-lPy~i--s~~il~~ll~ 119 (262)
T PF00398_consen 91 YDL----LKNQPLLVVGN-LPYNI--SSPILRKLLE 119 (262)
T ss_dssp GGH----CSSSEEEEEEE-ETGTG--HHHHHHHHHH
T ss_pred HHh----hcCCceEEEEE-ecccc--hHHHHHHHhh
Confidence 211 12344566654 66632 3445544444
No 491
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0023 Score=61.96 Aligned_cols=116 Identities=16% Similarity=0.255 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCc-EEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDV-FVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
....+|||+|.|.|..+..+....|.. .++-++.|+..-+.......... ........|+....++.| ....|++|+
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp-~ad~ytl~i 190 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP-AADLYTLAI 190 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC-ccceeehhh
Confidence 566789999999998877766666654 46778888876655443221100 011112233332222212 234566666
Q ss_pred EcccccCCC-hhHHHHHHHHHHhccCCCeEEEEEecCCCc
Q 008457 152 MVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGD 190 (564)
Q Consensus 152 ~~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~~~ 190 (564)
...-|-+.. +..+...++.+..++.|||.|+|.+.+.+.
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 655443432 344556899999999999999999887654
No 492
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.78 E-value=0.0082 Score=58.60 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcc--c------ccCCCeeEEEecCCcccccCCCCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHK--D------FTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~--~------~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
....+||-+|.|.|--++.+.+. | -.+++-+|++|.|++.++... . -...+++++..|+.+.-- -..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr---~a~ 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLR---TAA 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHH---hhc
Confidence 45678999999999998888775 5 568999999999999998431 1 123578888888754221 134
Q ss_pred CceeEEEEcccccCCC---hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 145 SSIDIVTMVFVLSAVS---PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~---~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+.||.|+.-.-=..-+ +---..+..-+.+.|+++|.+++..
T Consensus 364 ~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 364 DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 5899999832211110 1122357778889999999999853
No 493
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.75 E-value=0.0038 Score=55.89 Aligned_cols=111 Identities=14% Similarity=0.267 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--------CCCeeEEEecCCcccccCCCCCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--------ETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--------~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
++...+.|||||-|.++..|+..+|+.-+.|+++-...-+..+.+.... ..++.....+.... ++.-|..+
T Consensus 59 ~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~-lpn~f~kg 137 (249)
T KOG3115|consen 59 NKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF-LPNFFEKG 137 (249)
T ss_pred cccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh-ccchhhhc
Confidence 4557899999999999999999999999999999887777776654211 12344433333211 01011112
Q ss_pred ceeEEEEcccccCCC------hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 146 SIDIVTMVFVLSAVS------PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~------~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
...-.+..+-=-|+- .--...++.+..-+|++||.++..+
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 222222211111220 0012357788888999999998754
No 494
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.74 E-value=0.0043 Score=60.66 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=54.8
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCC
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLI 134 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~ 134 (564)
.+..+..+.+.+.++...+|.--|.|.++..+++..|+++++|+|.++.+++.|+++......++.++..++.
T Consensus 7 Vll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 7 VLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred ccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 4556777777778999999999999999999999988899999999999999999987655566777666653
No 495
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.69 E-value=0.0072 Score=52.65 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=41.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHh-----cCCCEEEEEcCChhHHHHHHHHHHhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAA-----GSADLVVATDGDSIALDLLAQNVTANL 423 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~-----~~~~~v~~tD~~~~~l~~~~~n~~~n~ 423 (564)
.+..+|+|+|||-|.++..++. ....+|+++|.++..++.+++......
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 4677999999999999888888 566799999999999988887776644
No 496
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.67 E-value=0.07 Score=52.36 Aligned_cols=175 Identities=12% Similarity=0.094 Sum_probs=102.3
Q ss_pred CCCceEEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhc--CCC---CCCCCeEEEeCCcccHHHHHHHh
Q 008457 322 FEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLAR--NPT---IVAGKKVLELGCGCGGICSMVAA 396 (564)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~--~~~---~~~~~~vLelG~G~G~l~~~~~~ 396 (564)
.+.++.+.++-.|.++++....+.+-.+.+.. +|-.. +|. ...-.+||=||-|-|.....+..
T Consensus 242 qspYQ~iVvTr~g~d~rLYldG~LQfsTrDe~------------RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellk 309 (508)
T COG4262 242 QSPYQRIVVTRRGDDLRLYLDGGLQFSTRDEY------------RYHESLVYPALSSVRGARSVLVLGGGDGLALRELLK 309 (508)
T ss_pred cCccceEEEEEecCceEEEEcCceeeeechhh------------hhhheeeecccccccccceEEEEcCCchHHHHHHHh
Confidence 35677788888888888876554421111111 11111 222 22456899999999944455554
Q ss_pred cC-CCEEEEEcCChhHHHHHHHHHHh---cCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC-C---
Q 008457 397 GS-ADLVVATDGDSIALDLLAQNVTA---NLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP-E--- 468 (564)
Q Consensus 397 ~~-~~~v~~tD~~~~~l~~~~~n~~~---n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~-~--- 468 (564)
.. ..+|+.+|++|+|++.+++|... |.......++.+..- |.+.-++. ....||+||. |..--. .
T Consensus 310 yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~d-----DAf~wlr~-a~~~fD~vIV-Dl~DP~tps~~ 382 (508)
T COG4262 310 YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVND-----DAFQWLRT-AADMFDVVIV-DLPDPSTPSIG 382 (508)
T ss_pred CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEec-----cHHHHHHh-hcccccEEEE-eCCCCCCcchh
Confidence 44 56999999999999999976543 333333345555432 22222221 2348999883 322110 0
Q ss_pred --ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh---HHHHHHHHcCCeEEEE
Q 008457 469 --AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVDK 524 (564)
Q Consensus 469 --~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~g~~~~~~ 524 (564)
.-.++-..+++.| +++| .+++....--.+.+ ....+++++|+.+...
T Consensus 383 rlYS~eFY~ll~~~l-~e~G--------l~VvQags~y~tp~vfw~i~aTik~AG~~~~Py 434 (508)
T COG4262 383 RLYSVEFYRLLSRHL-AETG--------LMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPY 434 (508)
T ss_pred hhhhHHHHHHHHHhc-CcCc--------eEEEecCCCccCCceeeeehhHHHhCcceeeee
Confidence 1245667778888 8877 66665444333333 3457788999887654
No 497
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.61 E-value=0.024 Score=55.48 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=77.7
Q ss_pred eEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEE
Q 008457 379 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI 458 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~I 458 (564)
+|+||.||+|++...+...+...|.++|+++.+++..+.|....-. .-++..++.. .+ ...+|+|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~-----~~Di~~~~~~---------~~-~~~~D~l 66 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLI-----EGDITKIDEK---------DF-IPDIDLL 66 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCc-----cCccccCchh---------hc-CCCCCEE
Confidence 6999999999887777766777899999999999999998642100 0111111111 11 3479999
Q ss_pred EEeceeeC----------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC-------hhHHHHHHHHcCCeE
Q 008457 459 LGTDVSYI----------PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-------EPSMLSAATQCGFRL 521 (564)
Q Consensus 459 i~~d~~y~----------~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~-------~~~~~~~~~~~g~~~ 521 (564)
+++-..-. ......|+..+.+++ +. ..|.+++.-...... ...+.+.+.+.|+.+
T Consensus 67 ~~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i-~~-------~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~ 138 (275)
T cd00315 67 TGGFPCQPFSIAGKRKGFEDTRGTLFFEIIRIL-KE-------KKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNV 138 (275)
T ss_pred EeCCCChhhhHHhhcCCCCCchHHHHHHHHHHH-Hh-------cCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEE
Confidence 97753321 122344676677777 33 245666655554321 235677788889988
Q ss_pred EEEc
Q 008457 522 VDKW 525 (564)
Q Consensus 522 ~~~~ 525 (564)
....
T Consensus 139 ~~~~ 142 (275)
T cd00315 139 YWKL 142 (275)
T ss_pred EEEE
Confidence 7663
No 498
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.59 E-value=0.016 Score=49.57 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=58.4
Q ss_pred EEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCC---------hhHHHHHHH
Q 008457 101 FVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVS---------PEKMSLVLQ 169 (564)
Q Consensus 101 ~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~---------~~~~~~~l~ 169 (564)
+|+|+|+-+++++.++++....+ .+++++..+-.. +..-++.+++|+++.|.. ++| ++....+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~--l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN--LDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG--GGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH--HHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHH
Confidence 58999999999999999876543 468887776543 332334468999998764 332 355678899
Q ss_pred HHHhccCCCeEEEEEecCCCc
Q 008457 170 NIKKVLKPTGYVLFRDYAIGD 190 (564)
Q Consensus 170 ~~~r~LkpgG~lii~~~~~~~ 190 (564)
.+.++|+|||.+.+..+...+
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHEEEEEEEEEEE--STC
T ss_pred HHHHhhccCCEEEEEEeCCCC
Confidence 999999999999998766543
No 499
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.025 Score=57.43 Aligned_cols=134 Identities=20% Similarity=0.189 Sum_probs=81.8
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC---CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS---ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~---~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
..+|.+|||+.|+-|+=+..+++.. +..|++.|.++.=++.++.|+..-+.. ++.+...|=...... ..
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~----nv~~~~~d~~~~~~~----~~ 225 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR----NVIVVNKDARRLAEL----LP 225 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC----ceEEEeccccccccc----cc
Confidence 3478999999999998888877754 346799999999999999999987763 334443332111000 01
Q ss_pred cCCCccEEEEe-------------ceeeCC---------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--cCC
Q 008457 451 NNEGFEVILGT-------------DVSYIP---------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--QVD 506 (564)
Q Consensus 451 ~~~~fD~Ii~~-------------d~~y~~---------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--~~~ 506 (564)
...+||.|+.= |+.+.. ..-..+++...++| +|+| +++.++-.- .+.
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~l-k~GG--------~LVYSTCS~~~eEN 296 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLL-KPGG--------VLVYSTCSLTPEEN 296 (355)
T ss_pred ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc-CCCC--------EEEEEccCCchhcC
Confidence 11259999821 122221 13556778888888 9987 444443333 333
Q ss_pred hhHHHHHHHHc-CCeEEEE
Q 008457 507 EPSMLSAATQC-GFRLVDK 524 (564)
Q Consensus 507 ~~~~~~~~~~~-g~~~~~~ 524 (564)
+.-....+++. +++.+.+
T Consensus 297 E~vV~~~L~~~~~~~~~~~ 315 (355)
T COG0144 297 EEVVERFLERHPDFELEPV 315 (355)
T ss_pred HHHHHHHHHhCCCceeecc
Confidence 32233444343 6666655
No 500
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.11 Score=46.90 Aligned_cols=151 Identities=19% Similarity=0.184 Sum_probs=91.9
Q ss_pred ceechhHH-HHHHHHhc---CCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHH-HHHHHhcCCCCCC
Q 008457 355 LMLWESAH-LMAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLL-AQNVTANLKPPFL 428 (564)
Q Consensus 355 ~~~W~~~~-~l~~~l~~---~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~-~~n~~~n~~~~~~ 428 (564)
...|+.-+ .||..++. +..+.+|.+||=||+.+|.-.+.++-.- ...|.+++.++....-+ .---..+++-+
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~P-- 128 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIP-- 128 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCcee--
Confidence 56786643 45555554 2356689999999999997778777653 46899999998665433 22222333211
Q ss_pred CceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh-
Q 008457 429 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE- 507 (564)
Q Consensus 429 ~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~- 507 (564)
.- ++....+....+ -+..|+|. .| +-.+...+-+.......| +++| .++++-+.|..+.
T Consensus 129 -----IL---~DA~~P~~Y~~~-Ve~VDviy-~D-VAQp~Qa~I~~~Na~~FL-k~~G--------~~~i~iKArSIdvT 188 (231)
T COG1889 129 -----IL---EDARKPEKYRHL-VEKVDVIY-QD-VAQPNQAEILADNAEFFL-KKGG--------YVVIAIKARSIDVT 188 (231)
T ss_pred -----ee---cccCCcHHhhhh-cccccEEE-Ee-cCCchHHHHHHHHHHHhc-ccCC--------eEEEEEEeeccccc
Confidence 10 111111111111 12344432 23 123567788889999999 9888 7788888876432
Q ss_pred ---hH----HHHHHHHcCCeEEEEcCC
Q 008457 508 ---PS----MLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 508 ---~~----~~~~~~~~g~~~~~~~~~ 527 (564)
.. -.+.+.+.||++.+....
T Consensus 189 ~dp~~vf~~ev~kL~~~~f~i~e~~~L 215 (231)
T COG1889 189 ADPEEVFKDEVEKLEEGGFEILEVVDL 215 (231)
T ss_pred CCHHHHHHHHHHHHHhcCceeeEEecc
Confidence 22 245677889999998755
Done!