BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008458
         (564 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score =  128 bits (321), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 64/71 (90%), Gaps = 1/71 (1%)

Query: 369 VQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVIT 428
           VQT SEVD+LDDGYRWRKYGQKVV+GNP P RSYYKCT  GC VRKHVERA+ DPKAV+T
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYP-RSYYKCTTPGCGVRKHVERAATDPKAVVT 66

Query: 429 TYEGKHNHDVP 439
           TYEGKHNHD+P
Sbjct: 67  TYEGKHNHDLP 77



 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKP 275
           DDGY WRKYGQK VKG+ +PRSYYKCT P C V+K  ER+  D +     Y+G H+H  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 64/74 (86%), Gaps = 1/74 (1%)

Query: 366 RVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKA 425
           R+VV T +  DI++DGYRWRKYGQK V+G+P P RSYY+C++ GCPV+KHVER+SHD K 
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYP-RSYYRCSSPGCPVKKHVERSSHDTKL 60

Query: 426 VITTYEGKHNHDVP 439
           +ITTYEGKH+HD+P
Sbjct: 61  LITTYEGKHDHDMP 74



 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFER-SHDGQITEIIYKGTHDHPKP 275
           +DGY WRKYGQK VKGS +PRSYY+C+ P C VKK  ER SHD ++    Y+G HDH  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74


>pdb|1O6D|A Chain A, Crystal Structure Of A Hypothetical Protein
          Length = 163

 Score = 30.8 bits (68), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 13/76 (17%)

Query: 224 KYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSA 283
           K G KH +  +F R +  C     E+K    R H G I EI+ K T D     L+ R   
Sbjct: 18  KEGIKHYE--KFLRRF--CKPEVLEIK----RVHRGSIEEIVRKETED-----LTNRILP 64

Query: 284 GNMMSIQEERPDKVSS 299
           G+ + + ++R ++VSS
Sbjct: 65  GSFVMVMDKRGEEVSS 80


>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
 pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
          Length = 464

 Score = 28.5 bits (62), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 252 LFERS----HDGQITE-IIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGS 306
           LF RS    H  ++ E +I   T +    QLS  YS G+ +  Q++ PD +  +  + G 
Sbjct: 243 LFWRSLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSSLMPQKKNPDSLELIRSKAGR 302

Query: 307 MYGQMSHAMET-NGTP 321
           ++G+ +  + T  G P
Sbjct: 303 VFGRCAGLLMTLKGLP 318


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.130    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,287,441
Number of Sequences: 62578
Number of extensions: 664457
Number of successful extensions: 828
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 7
length of query: 564
length of database: 14,973,337
effective HSP length: 104
effective length of query: 460
effective length of database: 8,465,225
effective search space: 3894003500
effective search space used: 3894003500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)