Query 008458
Match_columns 564
No_of_seqs 347 out of 1213
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 04:02:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 6.8E-35 2.3E-39 243.5 6.5 76 365-441 1-76 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.6E-34 5.4E-39 242.3 5.1 75 365-440 4-78 (78)
3 2ayd_A WRKY transcription fact 100.0 4E-29 1.4E-33 208.8 5.6 63 214-276 12-75 (76)
4 1wj2_A Probable WRKY transcrip 100.0 4.9E-29 1.7E-33 209.1 5.6 63 214-276 15-78 (78)
5 2rpr_A Flywch-type zinc finger 75.3 1.8 6.3E-05 35.7 3.1 61 365-439 11-74 (87)
6 2rpr_A Flywch-type zinc finger 57.6 5.6 0.00019 32.7 2.5 49 215-275 23-74 (87)
7 1cz6_A Protein (androctonin); 27.7 14 0.00049 24.8 0.2 8 401-408 16-23 (26)
8 1odh_A MGCM1; transcription fa 14.2 88 0.003 29.7 2.5 22 257-278 139-160 (174)
9 1odh_A MGCM1; transcription fa 9.4 2.7E+02 0.0091 26.5 4.0 38 402-442 122-160 (174)
10 1xiw_B T-cell surface glycopro 7.7 64 0.0022 26.4 -0.8 28 217-244 17-54 (79)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=6.8e-35 Score=243.48 Aligned_cols=76 Identities=66% Similarity=1.271 Sum_probs=73.3
Q ss_pred CceeeeccccccCCCccchhhhccCccccCCCCCccccccccCCCCCcceeEEecCCCCCeEEEEEeccCCCCCCCC
Q 008458 365 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTA 441 (564)
Q Consensus 365 prvvv~t~se~d~~dDGy~WRKYGQK~ikGn~~P~RsYYrCt~~gC~a~K~Vqr~~~D~~~~~~TY~G~HnH~~p~~ 441 (564)
.||+|+|.+++++++|||+|||||||.|||+++| |+|||||.+||+|+|+|||+.+|+.+|+|||+|+|||+.|.+
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~P-RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~ 76 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYP-RSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG 76 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSC-EEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCc-eeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence 3799999999999999999999999999999999 999999999999999999999999999999999999999863
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=1.6e-34 Score=242.31 Aligned_cols=75 Identities=79% Similarity=1.317 Sum_probs=69.7
Q ss_pred CceeeeccccccCCCccchhhhccCccccCCCCCccccccccCCCCCcceeEEecCCCCCeEEEEEeccCCCCCCC
Q 008458 365 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPT 440 (564)
Q Consensus 365 prvvv~t~se~d~~dDGy~WRKYGQK~ikGn~~P~RsYYrCt~~gC~a~K~Vqr~~~D~~~~~~TY~G~HnH~~p~ 440 (564)
.+|+|+|.+++++++|||+|||||||.|||+++| |+|||||.+||+|+|+|||+.+|+.+|+|||+|+|||+.|+
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~P-RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYP-RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSC-EEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCe-eEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 4789999999999999999999999999999999 99999999999999999999999999999999999999884
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.95 E-value=4e-29 Score=208.76 Aligned_cols=63 Identities=56% Similarity=1.060 Sum_probs=59.4
Q ss_pred CCCCCCccchhcCccccCCCCCCCCccccCCCccceeeeEEecc-CCcEEEEEecCCCCCCCCC
Q 008458 214 MPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ 276 (564)
Q Consensus 214 ~~~~DGy~WRKYGQK~Ikgs~~PRsYYrCt~~~C~akK~Vers~-Dg~i~~i~Y~G~HnH~~P~ 276 (564)
...+|||+|||||||.|||++|||+|||||+.+|+|+|+|||+. |+++++|+|+|+|||+.|.
T Consensus 12 ~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 12 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 35699999999999999999999999999999999999999975 7899999999999999885
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.95 E-value=4.9e-29 Score=209.10 Aligned_cols=63 Identities=54% Similarity=1.022 Sum_probs=59.0
Q ss_pred CCCCCCccchhcCccccCCCCCCCCccccCCCccceeeeEEec-cCCcEEEEEecCCCCCCCCC
Q 008458 214 MPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHPKPQ 276 (564)
Q Consensus 214 ~~~~DGy~WRKYGQK~Ikgs~~PRsYYrCt~~~C~akK~Vers-~Dg~i~~i~Y~G~HnH~~P~ 276 (564)
.+.+|||+|||||||.|||++|||+|||||+++|+|+|+|||+ .|++++.|+|+|+|||+.|.
T Consensus 15 ~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 15 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 3579999999999999999999999999999999999999996 58899999999999999873
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=75.34 E-value=1.8 Score=35.71 Aligned_cols=61 Identities=18% Similarity=0.390 Sum_probs=38.1
Q ss_pred CceeeeccccccCCCccchhhhccCccccCCCCCccccccccC---CCCCcceeEEecCCCCCeEEEEEeccCCCCCC
Q 008458 365 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTN---AGCPVRKHVERASHDPKAVITTYEGKHNHDVP 439 (564)
Q Consensus 365 prvvv~t~se~d~~dDGy~WRKYGQK~ikGn~~P~RsYYrCt~---~gC~a~K~Vqr~~~D~~~~~~TY~G~HnH~~p 439 (564)
..++.......-++-|||...+--+ . .. +.|.+|+. .+|.|+=.... .+ + .-.+.|||++.
T Consensus 11 ~~fv~s~rG~~~Lv~~Gy~Y~~~~~---~---~~-~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 11 LEFLRTSLGGRFLVHESFLYRKEKA---A---GE-KVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPD 74 (87)
T ss_dssp CEEEEETTTEEEEEETTEEEEEEEE---C---SS-CEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCC
T ss_pred eEEEEcCCCCcEEEECCEEEEeeec---C---CC-cEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCc
Confidence 3454444444457789998776321 1 12 78999995 48999855443 12 2 24688999653
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=57.62 E-value=5.6 Score=32.74 Aligned_cols=49 Identities=16% Similarity=0.357 Sum_probs=31.3
Q ss_pred CCCCCccchhcCccccCCCCCCCCccccCC---CccceeeeEEeccCCcEEEEEecCCCCCCCC
Q 008458 215 PSDDGYNWRKYGQKHVKGSEFPRSYYKCTH---PNCEVKKLFERSHDGQITEIIYKGTHDHPKP 275 (564)
Q Consensus 215 ~~~DGy~WRKYGQK~Ikgs~~PRsYYrCt~---~~C~akK~Vers~Dg~i~~i~Y~G~HnH~~P 275 (564)
..-|||...+--+ ...+.|.+|+. .+|.|+=.... ++ ++..+.|||++.
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE----EEECSCCSSCCC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC----EECCCCcCCCCc
Confidence 4578887665321 23468999986 37999744332 22 446789999753
No 7
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=27.69 E-value=14 Score=24.76 Aligned_cols=8 Identities=75% Similarity=1.501 Sum_probs=6.7
Q ss_pred ccccccCC
Q 008458 401 SYYKCTNA 408 (564)
Q Consensus 401 sYYrCt~~ 408 (564)
+|||||++
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999974
No 8
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=14.25 E-value=88 Score=29.74 Aligned_cols=22 Identities=45% Similarity=0.868 Sum_probs=15.2
Q ss_pred cCCcEEEEEecCCCCCCCCCCC
Q 008458 257 HDGQITEIIYKGTHDHPKPQLS 278 (564)
Q Consensus 257 ~Dg~i~~i~Y~G~HnH~~P~~~ 278 (564)
.||.....--+|.|+||+|...
T Consensus 139 h~~~~ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 139 HDGRFIFFQSKGEHDHPRPETK 160 (174)
T ss_dssp ECSSBEEEEEECCCCSCCCCCH
T ss_pred EcCCEEEEecccccCCCCCCCc
Confidence 4444444456899999999753
No 9
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=9.36 E-value=2.7e+02 Score=26.53 Aligned_cols=38 Identities=26% Similarity=0.558 Sum_probs=25.8
Q ss_pred cccccC-CCCCcceeEEecCCCCCeEEEEEeccCCCCCCCCC
Q 008458 402 YYKCTN-AGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAR 442 (564)
Q Consensus 402 YYrCt~-~gC~a~K~Vqr~~~D~~~~~~TY~G~HnH~~p~~r 442 (564)
-+.|.. -|=|| -|..|- |...+...-+|+|+|+.|.+.
T Consensus 122 ~~~Crgh~GyPV-ThFWrh--~~~~ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 122 LIPCRGHGGFPV-TNFWRH--DGRFIFFQSKGEHDHPRPETK 160 (174)
T ss_dssp EECCCTBTTBCC-EEEEEE--CSSBEEEEEECCCCSCCCCCH
T ss_pred eEeccCcCCCcc-eEEEEE--cCCEEEEecccccCCCCCCCc
Confidence 455653 36666 466663 555566678999999999874
No 10
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=7.73 E-value=64 Score=26.39 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=18.9
Q ss_pred CCCccchhcCccc--------cC--CCCCCCCccccCC
Q 008458 217 DDGYNWRKYGQKH--------VK--GSEFPRSYYKCTH 244 (564)
Q Consensus 217 ~DGy~WRKYGQK~--------Ik--gs~~PRsYYrCt~ 244 (564)
..++.|-|-|... +. ...-||+||.|.-
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~ 54 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNG 54 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecC
Confidence 5668899887641 22 4455999999953
Done!