Query 008460
Match_columns 564
No_of_seqs 148 out of 183
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 12:26:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2428 Uncharacterized conser 100.0 6.5E-64 1.4E-68 523.1 20.1 323 161-519 113-441 (443)
2 PF04004 Leo1: Leo1-like prote 100.0 3.4E-52 7.4E-57 393.6 14.6 162 192-354 1-171 (171)
3 COG5090 TFG2 Transcription ini 74.6 7 0.00015 40.6 6.0 58 265-323 67-136 (297)
4 PF05132 RNA_pol_Rpc4: RNA pol 62.3 21 0.00046 32.9 6.0 57 256-312 71-130 (131)
5 PF10587 EF-1_beta_acid: Eukar 60.5 3.9 8.5E-05 29.4 0.7 12 106-117 1-12 (28)
6 PF14160 FAM110_C: Centrosome- 40.1 5.7 0.00012 36.6 -1.4 16 245-260 88-103 (111)
7 PRK14741 spoVM stage V sporula 39.6 12 0.00027 26.3 0.5 12 191-202 2-13 (26)
8 COG5402 Uncharacterized conser 38.9 31 0.00067 34.5 3.3 21 252-272 126-147 (194)
9 KOG4487 Uncharacterized conser 36.6 51 0.0011 30.3 4.0 53 256-310 42-103 (110)
10 PF08940 DUF1918: Domain of un 27.3 43 0.00094 27.9 1.8 14 256-269 37-51 (58)
11 PF09696 Ctf8: Ctf8; InterPro 23.3 2.2E+02 0.0047 26.4 5.9 48 261-310 54-116 (122)
12 TIGR03054 photo_alph_chp1 puta 23.2 49 0.0011 31.6 1.7 16 253-268 95-110 (135)
13 KOG3122 DNA-directed RNA polym 20.6 1.2E+02 0.0026 32.8 4.0 55 257-311 250-308 (310)
No 1
>KOG2428 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.5e-64 Score=523.11 Aligned_cols=323 Identities=36% Similarity=0.528 Sum_probs=258.7
Q ss_pred cccC-CcCCCCCCCCCeeeecc-CCCCCCCCCceeEeecCCcccccCCCCCCCCCcccCCc--ccccch-hccccccccc
Q 008460 161 EHVE-PKHKEKPVGPPLELEIP-LRPPPADPTKMNMIKVSNIMGIDPKPFDPKTYVEEDTF--VTDESG-AKKRIRLENN 235 (564)
Q Consensus 161 e~~E-~~~~ek~~~~~ldlelP-~~~~p~~~~~l~~lKmPNFLsIeP~PFDPeTFe~e~~~--~~dE~g-~~~rl~~eeN 235 (564)
+.++ +..++.++.++|++.|| +.+++.....+||+||||||+|+|+||||+||+.+..+ .+++.| .+.++++ +|
T Consensus 113 ~~~e~~~e~e~~~e~v~evevp~~~n~~~~~~~~~fvkiPNFLsVep~PfDPetyede~~~~~~~Dee~r~r~klkv-eN 191 (443)
T KOG2428|consen 113 EEQEEAQEKEPPVETVLEVEVPIFVNPDLGKNPSFFVKIPNFLSVEPKPFDPETYEDEFEDEALLDEEGRQRLKLKV-EN 191 (443)
T ss_pred cchhhccccccCCCcceEeecccccCCccCCCccceeecCcccccCCcCCChhhhhhhhhhhhhcccchhhhhhhhh-cc
Confidence 3444 66788899999999999 55554455678999999999999999999999986432 335544 4566665 69
Q ss_pred eEEEeeecCCCCCceecccccEEEeCCCceeeeeccceeeeeccccccCCceEEEeccCceeEEeeeecceEEeecCCCC
Q 008460 236 IVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIPSSLS 315 (564)
Q Consensus 236 TIRWR~~~d~dG~~~kESNARIVRWSDGSlSL~IGnE~FDI~~~~l~~~d~hLyvrh~s~lLQ~qg~It~kLtfrPtSt~ 315 (564)
|||||+.++.+|..++||||||||||||||||+||||+|||+.+||..+++|||++++++ ||.||+|+++|||+|+||+
T Consensus 192 TVRWR~~~d~~g~~~kESNAriVrWSDGS~SL~lGNEvfDv~~~pl~~~~nhl~vrq~t~-l~~Q~~ik~kltFrP~S~~ 270 (443)
T KOG2428|consen 192 TVRWRERRDKDGNKIKESNARIVRWSDGSMSLHLGNEVFDVYKQPLSGNQNHLFVRQGTG-LQGQAVIKKKLTFRPHSTD 270 (443)
T ss_pred eeeEeeeecCCCCcceeccceEEEecCCceeEeechhHHHhhhcccccCcceeEEecccc-cchhheeeceeEeeccccc
Confidence 999999999999999999999999999999999999999999999999999999999864 8899999999999999999
Q ss_pred cHHHHHHHHHHHhhhccccccc-ceeccCChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccccccccCCCcccccc
Q 008460 316 SNSHRLLTALVDSRHKKVYKVK-NCITDIDPEREKEEKERAESQNIRANVLLNRKREKINRKYTQTVERRRQLSTGYLED 394 (564)
Q Consensus 316 S~tHrrLt~ava~r~~K~~kik-~~it~~DPEleKke~EkaEeErlRa~~kl~RKREk~~rr~~~~~~Rr~gLS~g~LE~ 394 (564)
|.||++||+.|+.+.+|+.+|+ +++++.|||.+|.+++|+|.++|||+.+++.++. +..++++.
T Consensus 271 S~tHrklt~~~a~r~~k~skvk~~~~vg~DPE~~k~~~~KkEee~LRa~~R~~~~~~---------------~~~~~r~~ 335 (443)
T KOG2428|consen 271 SATHRKLTLNRADRSQKTSKVKILTIVGKDPEHEKREREKKEEERLRASRRREQRAL---------------MNPKQREK 335 (443)
T ss_pred hHHHHHHHHHHhhcccccccceeeeeccCCccchhHHHHHHHHHHHHHHHHHHHHHh---------------hcccccCc
Confidence 9999999999999999999999 5689999999999999999999997665332221 12344445
Q ss_pred ccccCCCCCccchhhhHHHhHHHHHHHHHHhHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhcccccccccc
Q 008460 395 ALEEDDETDYHDSRRSRRRFEEELEAEVRAEKRIINAKKPQGHRDIPRKSSTLPAAKSSRRPVDFSESEREESEYETDGE 474 (564)
Q Consensus 395 gldeDDe~d~~~~~r~~~~~~~~~~~~~~~e~r~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 474 (564)
++.+++....|+ ..|..+++.|...+.+|.++|+.. +. ... |-.........+++++..++.+++...+
T Consensus 336 ~~~~e~~~~~~n-----~~~~~~~~~e~e~~~~~~a~k~~~--~~---~~~-~~~~~~d~~~~d~de~sd~e~e~~~~~~ 404 (443)
T KOG2428|consen 336 RYAEEDSDSAYN-----SPTTYDEEEEGEDEIRLAALKNRY--KE---AGQ-SEEETADIEESDEDESSDEEAEKEKREE 404 (443)
T ss_pred ccccCccccccC-----CCCccccccccchhhhhhhhhhhh--cc---ccc-cccccccccccccccccchhHHHHHHHH
Confidence 555555555465 456778899999999999999853 32 122 5677778888899999999999998888
Q ss_pred ccccCcccccCCCCCccchhhHHHHhhhhccccccCCCCchhHhh
Q 008460 475 EDERSPLRKRVEGPEQDYEEEEEEEEEEQEEEPDINRASDDEEEA 519 (564)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (564)
..+.+|..++.++...+|.+..+.+ ..+.++.+++|.
T Consensus 405 kee~~~~~~~~~ees~~~~~~s~~d--------~~~~as~e~~Ed 441 (443)
T KOG2428|consen 405 KEEKLPADGEGREESDEGKDESESD--------KSNRASIEDEED 441 (443)
T ss_pred hhhcccccccccCcccccccccccc--------cccccccccccc
Confidence 8888888887766665444332221 355566665553
No 2
>PF04004 Leo1: Leo1-like protein; InterPro: IPR007149 Members of this family are part of the Paf1/RNA polymerase II complex [, ]. The Paf1 complex probably functions during the elongation phase of transcription [].
Probab=100.00 E-value=3.4e-52 Score=393.56 Aligned_cols=162 Identities=46% Similarity=0.782 Sum_probs=141.2
Q ss_pred eeEeecCCcccccCCCCCCCCCcccC---Ccccccch-hccccccccceEEEeeecCCCCCceecccccEEEeCCCceee
Q 008460 192 MNMIKVSNIMGIDPKPFDPKTYVEED---TFVTDESG-AKKRIRLENNIVRWRTVKNKDGMTSYESNARFVRWSDGSLQL 267 (564)
Q Consensus 192 l~~lKmPNFLsIeP~PFDPeTFe~e~---~~~~dE~g-~~~rl~~eeNTIRWR~~~d~dG~~~kESNARIVRWSDGSlSL 267 (564)
||++||||||+|+|+||||+||+++. ....++.+ .+.++.+ .|||||||+.+.+|+.++||||||||||||||||
T Consensus 1 l~~~k~Pnfl~iep~pFdp~t~~~~~~~~~~~~d~~~~~~~~~~~-~ntIRWR~~~~~~g~~~~eSNAriVrWsDGS~sL 79 (171)
T PF04004_consen 1 LYLLKMPNFLSIEPRPFDPETFEEDEEEEDELKDEEGRERLKLKV-ENTIRWRYSPDETGEKVKESNARIVRWSDGSLSL 79 (171)
T ss_pred CceecCCCcceeCCccCCchhcCCcccccccccchhhhhhhcccc-ccEEEEeecCCCCCCEeeecccEEEEEcCCceEE
Confidence 69999999999999999999998763 22344444 3344444 5999999999889999999999999999999999
Q ss_pred eeccceeee-ecccccc-CCceEEEecc-CceeEEeeeecceEEeecCCCCcHHHHHHHHHHHhhhccccc-ccc-eecc
Q 008460 268 QIGNEVLDI-TVQDAQH-DQAHLFLRHG-KGILQSQGRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYK-VKN-CITD 342 (564)
Q Consensus 268 ~IGnE~FDI-~~~~l~~-~d~hLyvrh~-s~lLQ~qg~It~kLtfrPtSt~S~tHrrLt~ava~r~~K~~k-ik~-~it~ 342 (564)
+||+|+||| ...++.. +++|||++|+ .++|||+|+|+++|+|+|+|++|.+|++|+++|+.++.|.++ +++ ++|+
T Consensus 80 ~iG~E~fdi~~~~~~~~~~~~~L~~~~~~~~~l~~~~~i~~~l~~rP~s~~s~thr~l~~~~~~r~~k~~~~~~~~~~~~ 159 (171)
T PF04004_consen 80 HIGNEVFDIQKKYPLVQDDHNYLFVRHGSSGVLQGQGHITKKLTFRPASTDSATHRRLTQAVASRSSKKQQKVKMLIVTT 159 (171)
T ss_pred EeccEEEEeccccccccCCcceEEEEcCCcceEEEEEEecccEEEecCCccCHHHHHHHHHHHhhhcccccccccceecc
Confidence 999999999 8888754 6899999998 489999999999999999999999999999999999977654 454 5689
Q ss_pred CChhhHHHHHHH
Q 008460 343 IDPEREKEEKER 354 (564)
Q Consensus 343 ~DPEleKke~Ek 354 (564)
.|||++|+++||
T Consensus 160 ~DPE~~k~~~ek 171 (171)
T PF04004_consen 160 EDPELEKKEAEK 171 (171)
T ss_pred CCHHHHHHHhcC
Confidence 999999999985
No 3
>COG5090 TFG2 Transcription initiation factor IIF, small subunit (RAP30) [Transcription]
Probab=74.60 E-value=7 Score=40.58 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=33.7
Q ss_pred eeeeeccc--------eeeeeccccccCCceEEEeccC-ce---eEEeeeecceEEeecCCCCcHHHHHHH
Q 008460 265 LQLQIGNE--------VLDITVQDAQHDQAHLFLRHGK-GI---LQSQGRILKKMRFIPSSLSSNSHRLLT 323 (564)
Q Consensus 265 lSL~IGnE--------~FDI~~~~l~~~d~hLyvrh~s-~l---LQ~qg~It~kLtfrPtSt~S~tHrrLt 323 (564)
+||.|-|| .||+..++--..+.|+|--..+ .+ --.+|.|.+--.+.|.-.. .-||.+.
T Consensus 67 isLlL~ne~~n~~~P~~ydl~i~~k~v~n~yVfre~et~t~~k~tavvGtV~hEC~V~P~vNd-~Y~r~~q 136 (297)
T COG5090 67 ISLLLSNEFCNGGFPSSYDLKIKPKDVNNYYVFRESETSTHEKNTAVVGTVNHECYVTPEVND-EYLRYKQ 136 (297)
T ss_pred EEEEeccCCccCCCCcceeeeeccccccceEEEecccccccccccceeeeeccceeecccccH-HHHHHHH
Confidence 46666655 4888776643444444421111 11 1136888889999997654 6666653
No 4
>PF05132 RNA_pol_Rpc4: RNA polymerase III RPC4; InterPro: IPR007811 This family comprises a specific subunit for Pol III, the tRNA specific polymerase.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006383 transcription from RNA polymerase III promoter, 0005666 DNA-directed RNA polymerase III complex
Probab=62.27 E-value=21 Score=32.95 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=38.4
Q ss_pred cEEEeCCCceeeeeccceeeeeccccc-cCCceEEEec--cCceeEEeeeecceEEeecC
Q 008460 256 RFVRWSDGSLQLQIGNEVLDITVQDAQ-HDQAHLFLRH--GKGILQSQGRILKKMRFIPS 312 (564)
Q Consensus 256 RIVRWSDGSlSL~IGnE~FDI~~~~l~-~~d~hLyvrh--~s~lLQ~qg~It~kLtfrPt 312 (564)
+|+-.-.|.++|.||+-.|||..-... -.+.-+.+-. ..+-+-+-|.|.++|.+.|.
T Consensus 71 kL~V~kSGkv~l~iG~~~~dV~~G~~~~FlQevv~i~~~~~~~~~~~LG~v~~k~v~tPd 130 (131)
T PF05132_consen 71 KLRVHKSGKVTLKIGGVVFDVSPGTQCSFLQEVVAIDEEEEEGECYFLGQVSGKFVVTPD 130 (131)
T ss_pred EEEEEeCCcEEEEECCEEEEecCCCCCCchheEEEeeccCCCCeEEEeccccceEEEccC
Confidence 466667899999999999999864422 1222223323 22344567999999999885
No 5
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=60.54 E-value=3.9 Score=29.40 Aligned_cols=12 Identities=50% Similarity=0.858 Sum_probs=9.2
Q ss_pred ccCCCCccchhh
Q 008460 106 VFGDSDEEDVGE 117 (564)
Q Consensus 106 LFGdddDeE~~e 117 (564)
|||+|+++++++
T Consensus 1 LFGSddEeed~e 12 (28)
T PF10587_consen 1 LFGSDDEEEDEE 12 (28)
T ss_pred CCCCccccccHH
Confidence 899988766554
No 6
>PF14160 FAM110_C: Centrosome-associated C terminus
Probab=40.06 E-value=5.7 Score=36.63 Aligned_cols=16 Identities=38% Similarity=0.814 Sum_probs=14.0
Q ss_pred CCCCceecccccEEEe
Q 008460 245 KDGMTSYESNARFVRW 260 (564)
Q Consensus 245 ~dG~~~kESNARIVRW 260 (564)
|.|.-+.|=|||||+|
T Consensus 88 p~~~SIIERNARIIKW 103 (111)
T PF14160_consen 88 PYGVSIIERNARIIKW 103 (111)
T ss_pred CCCCceeeehhHHHHH
Confidence 4467899999999999
No 7
>PRK14741 spoVM stage V sporulation protein M; Provisional
Probab=39.57 E-value=12 Score=26.28 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=10.3
Q ss_pred ceeEeecCCccc
Q 008460 191 KMNMIKVSNIMG 202 (564)
Q Consensus 191 ~l~~lKmPNFLs 202 (564)
+.|.+|+|.||+
T Consensus 2 kfytiklpkflg 13 (26)
T PRK14741 2 KFYTIKLPKFLG 13 (26)
T ss_pred ceEEEeccHHHH
Confidence 468999999986
No 8
>COG5402 Uncharacterized conserved protein [Function unknown]
Probab=38.90 E-value=31 Score=34.46 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=17.7
Q ss_pred cccccEEEeC-CCceeeeeccc
Q 008460 252 ESNARFVRWS-DGSLQLQIGNE 272 (564)
Q Consensus 252 ESNARIVRWS-DGSlSL~IGnE 272 (564)
-=|.+-|-|| |||++++|+-.
T Consensus 126 Al~s~~Vlrs~Dg~~~I~vsp~ 147 (194)
T COG5402 126 ALNSRTVLRSADGSWVITVSPD 147 (194)
T ss_pred heeceeeeeecCCcEEEEECCC
Confidence 3488999999 99999999844
No 9
>KOG4487 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.55 E-value=51 Score=30.32 Aligned_cols=53 Identities=23% Similarity=0.199 Sum_probs=32.2
Q ss_pred cEEEeCCCc-eeeeeccceeeeeccccccCCceEEEe-----c---cCceeEEeeeecceEEee
Q 008460 256 RFVRWSDGS-LQLQIGNEVLDITVQDAQHDQAHLFLR-----H---GKGILQSQGRILKKMRFI 310 (564)
Q Consensus 256 RIVRWSDGS-lSL~IGnE~FDI~~~~l~~~d~hLyvr-----h---~s~lLQ~qg~It~kLtfr 310 (564)
=-+.|+||+ +.+.||+-.++=..-.+. -..|.+. | ...-+...++|..++.|+
T Consensus 42 Gr~c~~D~~q~~~~~G~~~l~G~v~k~~--rpLlvv~Kld~~h~~~k~~~~evv~Vir~KviFK 103 (110)
T KOG4487|consen 42 GRFCEQDGEQTLIRFGSLQLDGEVGKKQ--RPLLVVTKLDVMHFNSKDNKVEVVDVIRYKVIFK 103 (110)
T ss_pred cceeccCCCeEEEEEeeEEEeeeeeeec--ceeEEEEeehhhhhcCCCceEEeeeeEeEEEEec
Confidence 347899999 888899887764322211 0111111 1 123467789999999885
No 10
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=27.27 E-value=43 Score=27.90 Aligned_cols=14 Identities=43% Similarity=0.833 Sum_probs=11.2
Q ss_pred cEEEeCC-Cceeeee
Q 008460 256 RFVRWSD-GSLQLQI 269 (564)
Q Consensus 256 RIVRWSD-GSlSL~I 269 (564)
-+|||+| |-.+|..
T Consensus 37 Y~VRw~D~Ghe~lv~ 51 (58)
T PF08940_consen 37 YLVRWDDTGHESLVF 51 (58)
T ss_dssp EEEEETTTTEEEEE-
T ss_pred EEEEecCCCcEEEEe
Confidence 4799999 9888863
No 11
>PF09696 Ctf8: Ctf8; InterPro: IPR018607 Ctf8 (chromosome transmissions fidelity 8) is a component of the Ctf18 RFC-like complex which is a DNA clamp loader involved in sister chromatid cohesion.
Probab=23.27 E-value=2.2e+02 Score=26.40 Aligned_cols=48 Identities=21% Similarity=0.159 Sum_probs=31.2
Q ss_pred CCCceeeeec-cceeeeeccccccCCceEEEec--------------cCceeEEeeeecceEEee
Q 008460 261 SDGSLQLQIG-NEVLDITVQDAQHDQAHLFLRH--------------GKGILQSQGRILKKMRFI 310 (564)
Q Consensus 261 SDGSlSL~IG-nE~FDI~~~~l~~~d~hLyvrh--------------~s~lLQ~qg~It~kLtfr 310 (564)
..+..+|+|| +..+.=.+..|. ..++.++- ...-|++.++|+.++.|.
T Consensus 54 ~~~~~~L~IG~~q~L~Gkv~kL~--kPLaVLrk~~~~~~~~~~~~~~~~~e~evv~II~~KiiFk 116 (122)
T PF09696_consen 54 WMKRVTLYIGKHQRLEGKVVKLK--KPLAVLRKRKSNDDSSDDSEEESSTEYEVVDIIRYKIIFK 116 (122)
T ss_pred CCCeEEEEECCCEEEEEEEeccC--CCEEEEEEcccCcccccccCCCCCeEEEEEEeeeeeeEcc
Confidence 4578999999 777654444332 12333321 124688999999999984
No 12
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=23.24 E-value=49 Score=31.59 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=13.4
Q ss_pred ccccEEEeCCCceeee
Q 008460 253 SNARFVRWSDGSLQLQ 268 (564)
Q Consensus 253 SNARIVRWSDGSlSL~ 268 (564)
-=-+|++|+||-+||.
T Consensus 95 ~Pf~L~r~~dGrltL~ 110 (135)
T TIGR03054 95 PPFRLTRYDNGRLTLT 110 (135)
T ss_pred CCEEEEEEeCCcEEEE
Confidence 3458999999999985
No 13
>KOG3122 consensus DNA-directed RNA polymerase III subunit [Transcription]
Probab=20.62 E-value=1.2e+02 Score=32.78 Aligned_cols=55 Identities=20% Similarity=0.397 Sum_probs=36.3
Q ss_pred EEEeCCCceeeeeccceeeeeccccc-cCCceEEEecc---CceeEEeeeecceEEeec
Q 008460 257 FVRWSDGSLQLQIGNEVLDITVQDAQ-HDQAHLFLRHG---KGILQSQGRILKKMRFIP 311 (564)
Q Consensus 257 IVRWSDGSlSL~IGnE~FDI~~~~l~-~~d~hLyvrh~---s~lLQ~qg~It~kLtfrP 311 (564)
|...-=|-++|+||+=.|||+.-... -.+--++|..+ ++=|-.-|+|.++|.+.|
T Consensus 250 llV~KSGrVkLklG~V~fDV~~G~~~~FLQEl~sV~l~d~rs~nm~~LG~v~~klvvTP 308 (310)
T KOG3122|consen 250 LLVYKSGRVKLKLGDVLFDVSMGLDCSFLQELMSVGLGDSRSGNMTLLGSVKKKLVVTP 308 (310)
T ss_pred EEEEecCceEEEecCEEEEeccCchhHhhhhhheeecccccCCceEEeccccceeeeCC
Confidence 55555699999999999999864321 11222333332 343445799999999887
Done!