Your job contains 1 sequence.
>008461
MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ
LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD
MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC
EKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT
EMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ
KDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISREK
LLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFD
EECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRADKEDKLLDRQRRREKRIKQ
KMKRKRGGLGDDDDEEDEDNASDKDEESMERGRRKKAKIYFDSDSDNDNDERKQNKDDNG
PNIDSISLAEQEALALKLLNSMHS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008461
(564 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2160225 - symbol:AT5G54910 species:3702 "Arabi... 1503 4.0e-154 1
POMBASE|SPAC1093.05 - symbol:SPAC1093.05 "ATP-dependent R... 952 1.7e-103 3
DICTYBASE|DDB_G0284017 - symbol:ddx10 "DEAD/DEAH box heli... 975 2.1e-103 3
ASPGD|ASPL0000061778 - symbol:AN0589 species:162425 "Emer... 959 8.4e-102 2
UNIPROTKB|E9PIF2 - symbol:DDX10 "Probable ATP-dependent R... 978 3.6e-101 2
UNIPROTKB|Q13206 - symbol:DDX10 "Probable ATP-dependent R... 978 3.6e-101 2
UNIPROTKB|F1P0I3 - symbol:DDX10 "Probable ATP-dependent R... 961 1.6e-100 2
UNIPROTKB|Q5ZJF6 - symbol:DDX10 "Probable ATP-dependent R... 961 1.6e-100 2
MGI|MGI:1924841 - symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) bo... 956 3.7e-99 2
RGD|1308990 - symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box po... 957 2.0e-98 2
ZFIN|ZDB-GENE-071022-2 - symbol:ddx10 "DEAD (Asp-Glu-Ala-... 947 1.8e-97 2
UNIPROTKB|Q08DT0 - symbol:DDX10 "Uncharacterized protein"... 962 8.4e-97 1
UNIPROTKB|E2RC35 - symbol:DDX10 "Uncharacterized protein"... 957 2.9e-96 1
UNIPROTKB|A4RGU2 - symbol:DBP4 "ATP-dependent RNA helicas... 865 1.4e-94 3
CGD|CAL0004182 - symbol:HCA4 species:5476 "Candida albica... 862 3.4e-90 2
WB|WBGene00021277 - symbol:Y23H5B.6 species:6239 "Caenorh... 892 2.2e-89 1
SGD|S000003570 - symbol:HCA4 "DEAD box RNA helicase" spec... 825 5.0e-87 2
UNIPROTKB|E2RFA3 - symbol:DDX18 "Uncharacterized protein"... 687 1.2e-67 1
UNIPROTKB|F1RY13 - symbol:DDX18 "Uncharacterized protein"... 686 1.5e-67 1
UNIPROTKB|I3L7B7 - symbol:DDX18 "Uncharacterized protein"... 686 1.5e-67 1
UNIPROTKB|I3L840 - symbol:DDX18 "Uncharacterized protein"... 686 1.5e-67 1
UNIPROTKB|F1MSX0 - symbol:F1MSX0 "Uncharacterized protein... 685 1.9e-67 1
UNIPROTKB|F1N533 - symbol:DDX18 "Uncharacterized protein"... 685 1.9e-67 1
FB|FBgn0030855 - symbol:CG5800 species:7227 "Drosophila m... 660 2.0e-67 2
UNIPROTKB|Q9NVP1 - symbol:DDX18 "ATP-dependent RNA helica... 674 2.8e-66 1
MGI|MGI:1914192 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) bo... 672 4.5e-66 1
RGD|1549712 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box po... 671 5.8e-66 1
UNIPROTKB|D4A824 - symbol:Ddx18 "Protein Ddx18" species:1... 671 5.8e-66 1
UNIPROTKB|F1NEQ3 - symbol:DDX18 "Uncharacterized protein"... 661 6.7e-65 1
ZFIN|ZDB-GENE-030131-9685 - symbol:ddx18 "DEAD (Asp-Glu-A... 657 1.8e-64 1
FB|FBgn0025140 - symbol:pit "pitchoune" species:7227 "Dro... 643 5.4e-63 1
ASPGD|ASPL0000044206 - symbol:AN1949 species:162425 "Emer... 624 5.5e-61 1
POMBASE|SPAC1F7.02c - symbol:has1 "ATP-dependent RNA heli... 622 9.0e-61 1
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli... 618 2.4e-60 1
CGD|CAL0003050 - symbol:HAS1 species:5476 "Candida albica... 616 3.9e-60 1
UNIPROTKB|Q5AK59 - symbol:HAS1 "ATP-dependent RNA helicas... 616 3.9e-60 1
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 615 5.0e-60 1
WB|WBGene00015232 - symbol:B0511.6 species:6239 "Caenorha... 610 1.7e-59 1
TAIR|locus:2086909 - symbol:AT3G18600 species:3702 "Arabi... 589 2.8e-57 1
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ... 585 7.5e-57 1
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep... 585 7.5e-57 1
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi... 581 2.0e-56 1
UNIPROTKB|F1MW45 - symbol:DDX55 "ATP-dependent RNA helica... 533 5.4e-55 2
UNIPROTKB|Q2NL08 - symbol:DDX55 "ATP-dependent RNA helica... 533 5.4e-55 2
UNIPROTKB|Q8NHQ9 - symbol:DDX55 "ATP-dependent RNA helica... 533 2.4e-51 1
UNIPROTKB|F1RFL5 - symbol:DDX55 "Uncharacterized protein"... 528 8.3e-51 1
UNIPROTKB|F1P8J6 - symbol:DDX55 "Uncharacterized protein"... 526 1.3e-50 1
UNIPROTKB|F6XWM4 - symbol:DDX55 "Uncharacterized protein"... 526 1.3e-50 1
TAIR|locus:2825324 - symbol:AT1G71370 species:3702 "Arabi... 503 1.8e-50 2
UNIPROTKB|F1NJA0 - symbol:DDX55 "ATP-dependent RNA helica... 524 2.2e-50 1
UNIPROTKB|Q5ZLN8 - symbol:DDX55 "ATP-dependent RNA helica... 524 2.2e-50 1
MGI|MGI:1915098 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) bo... 510 6.7e-49 1
RGD|2324094 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box po... 507 1.4e-48 1
DICTYBASE|DDB_G0291588 - symbol:ddx55 "DEAD/DEAH box heli... 479 7.7e-48 2
UNIPROTKB|E2R316 - symbol:DDX55 "Uncharacterized protein"... 496 2.0e-47 1
FB|FBgn0037561 - symbol:CG9630 species:7227 "Drosophila m... 471 6.8e-47 2
UNIPROTKB|H7C452 - symbol:DDX18 "ATP-dependent RNA helica... 285 5.7e-46 2
ZFIN|ZDB-GENE-021212-1 - symbol:ddx55 "DEAD (Asp-Glu-Ala-... 482 6.2e-46 1
TAIR|locus:2153564 - symbol:AT5G05450 species:3702 "Arabi... 465 3.9e-44 1
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 436 4.6e-41 1
TAIR|locus:2159527 - symbol:STRS2 "STRESS RESPONSE SUPPRE... 423 1.1e-39 1
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 417 4.8e-39 1
POMBASE|SPBC24C6.02 - symbol:SPBC24C6.02 "ATP-dependent R... 395 6.7e-39 2
ASPGD|ASPL0000034540 - symbol:spb4 species:162425 "Emeric... 401 1.2e-38 2
WB|WBGene00013983 - symbol:ZK512.2 species:6239 "Caenorha... 410 2.6e-38 1
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 407 5.5e-38 1
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 407 5.5e-38 1
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 407 5.5e-38 1
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 407 5.5e-38 1
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 407 5.5e-38 1
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 385 7.3e-38 2
UNIPROTKB|F5H5U2 - symbol:DDX55 "ATP-dependent RNA helica... 326 8.6e-38 2
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 403 1.5e-37 1
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 403 1.5e-37 1
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 374 1.0e-36 2
TAIR|locus:2159517 - symbol:PDE340 "PIGMENT DEFECTIVE 340... 400 2.8e-36 1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 369 9.9e-36 3
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 369 9.9e-36 3
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 391 2.0e-35 1
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 375 1.3e-34 1
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 370 4.6e-34 1
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 376 7.9e-34 1
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 376 7.9e-34 1
UNIPROTKB|Q81JK1 - symbol:BAS5307 "ATP-dependent RNA heli... 351 1.0e-33 2
TIGR_CMR|BA_5703 - symbol:BA_5703 "ATP-dependent RNA heli... 351 1.0e-33 2
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 370 6.0e-33 2
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 369 6.6e-33 1
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 373 8.4e-33 1
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 363 1.1e-32 1
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 371 2.3e-32 1
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 371 2.4e-32 1
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 370 3.2e-32 1
UNIPROTKB|F1SV16 - symbol:F1SV16 "Uncharacterized protein... 350 6.5e-32 1
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 362 6.9e-32 1
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 362 6.9e-32 1
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 367 1.1e-31 1
TAIR|locus:2054688 - symbol:AT2G07750 species:3702 "Arabi... 367 1.3e-31 1
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 360 2.1e-31 1
UNIPROTKB|F1S0U0 - symbol:DDX31 "Uncharacterized protein"... 226 2.2e-31 3
GENEDB_PFALCIPARUM|PFB0860c - symbol:PFB0860c "RNA helica... 357 6.9e-31 1
WARNING: Descriptions of 725 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2160225 [details] [associations]
symbol:AT5G54910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AB005232 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
IPI:IPI00527032 RefSeq:NP_200302.1 UniGene:At.29471
ProteinModelPortal:Q9FFT9 SMR:Q9FFT9 STRING:Q9FFT9 PaxDb:Q9FFT9
PRIDE:Q9FFT9 EnsemblPlants:AT5G54910.1 GeneID:835582
KEGG:ath:AT5G54910 GeneFarm:988 TAIR:At5g54910 InParanoid:Q9FFT9
OMA:PEDGVGC PhylomeDB:Q9FFT9 ProtClustDB:CLSN2686959
Genevestigator:Q9FFT9 GermOnline:AT5G54910 Uniprot:Q9FFT9
Length = 739
Score = 1503 (534.1 bits), Expect = 4.0e-154, P = 4.0e-154
Identities = 295/467 (63%), Positives = 375/467 (80%)
Query: 1 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
+EKE V+E+NILVC PGRLLQHMDETPNF+C QLQILILDEADR+LD FK L+ I+SQ
Sbjct: 186 VEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQ 245
Query: 61 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 120
LPKHRQT LFSATQTK V+DLARLSL+DP+Y+SVH E+VTATP L QT MIVP+E+KLD
Sbjct: 246 LPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLD 305
Query: 121 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 180
MLWSFIK HLNS+ILVFL++ KQVK+V EAF KLRPGIPL L+G+M Q++RM +Y+QF
Sbjct: 306 MLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFI 365
Query: 181 EKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
E++SVLFCTDV +RGLDF+KAVDWVVQVDCPEDVASYIHRVGRTAR+ + G+S+LFLTP+
Sbjct: 366 ERQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPS 425
Query: 241 EMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ 300
E KM+EKL+EAK+PI KAN ++LQ VS LLAALLVKYPD+Q AQ+AFITYLRS+H +
Sbjct: 426 EEKMIEKLQEAKVPIKLIKANNQKLQEVSRLLAALLVKYPDLQGVAQRAFITYLRSIHKR 485
Query: 301 KDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQK-KGKMVPVKPV---LDNAEKEDKLMI 356
+DKE+FDV+KLSI+ FSASLGLPMTP+IRF N K K K V + ++NA++ + ++
Sbjct: 486 RDKEIFDVSKLSIENFSASLGLPMTPRIRFTNLKTKKKGVYESSIAMEIENAQEYEAPLV 545
Query: 357 SREKLLPDNFTEENVD-RDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGT 415
++ LL ++ EE+ + E K +E K + E ++ RV KNKKLKIN+HRP G+
Sbjct: 546 VKKDLLGEDLEEEDFALKPRKEGKVVEKSTKEE--EVLIPGNRVLKNKKLKINLHRPFGS 603
Query: 416 RLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRAD 462
R+V DEE N++ PLA +A V+LD+++ +YYKK+ E+++AD
Sbjct: 604 RVVLDEEGNSLAPLASVAAEAGTEVALDEERMNDYYKKVGAEMRKAD 650
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 952 (340.2 bits), Expect = 1.7e-103, Sum P(3) = 1.7e-103
Identities = 184/330 (55%), Positives = 244/330 (73%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
EKE ++ +NILVCTPGRLLQH+D+ NFD S LQ+LILDEADRILD+GF+ L+AIVS L
Sbjct: 154 EKERLSRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSL 213
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
P HRQT LFSATQTKSV+DLARLSL++P ++SVHE ++TP+ L Q + VPL +KLD+
Sbjct: 214 PVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDI 273
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
L+ FI+ HL K +VFL+SCKQV++V+E F+++RPGI L+ L+G+ KQ R + A+F
Sbjct: 274 LFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTS 333
Query: 182 KRSV-LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
R V LFCTD+ +RGLDF AVDWV+Q+D PEDV +YIHRVGRTARYN G ++L L P+
Sbjct: 334 SRHVVLFCTDIVARGLDF-PAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPS 392
Query: 241 EMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ 300
E L++L KI + + + L L K D+++ QKAFI+YLRS+++Q
Sbjct: 393 EEAFLKRLESKKIAVERINVKDGKKTSIRNQLQNLCFKDNDIKYIGQKAFISYLRSIYLQ 452
Query: 301 KDKEVFDVTKLSIDEFSASLGLPMTPKIRF 330
KDK+VF + KL ++ F+ SLGLP TPKI F
Sbjct: 453 KDKDVFQLDKLPVEAFADSLGLPGTPKITF 482
Score = 69 (29.3 bits), Expect = 1.7e-103, Sum P(3) = 1.7e-103
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 349 EKEDKLMISREKLLPDNFTEENVDRDILETK----DIEDEGKADLLEDVMRATRVKKNKK 404
+ +D L R++L+ N E+ D D L+ K D+ +E + R ++ +KK
Sbjct: 528 KNQDVLAAHRQRLVEVNSDED--DGDFLQVKRVDHDLPEETGERFNANSKRKEKMASSKK 585
Query: 405 LKINVHRPLGTRLVFDEECNTVPPLAM 431
+ ++ ++ FD+E N +P AM
Sbjct: 586 AMLK-YKKSADKVYFDDEGNAIPFYAM 611
Score = 38 (18.4 bits), Expect = 1.7e-103, Sum P(3) = 1.7e-103
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETP 27
E+E + ELN + + H E P
Sbjct: 20 EEEEIEELNSQIEALSETVDHFAELP 45
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 975 (348.3 bits), Expect = 2.1e-103, Sum P(3) = 2.1e-103
Identities = 194/415 (46%), Positives = 284/415 (68%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
EK+ +N +NIL+ TPGRLLQHMDET FDCS L+IL+LDEADRILD+GF K LN+IV L
Sbjct: 256 EKDKINAMNILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVENL 315
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
P+ RQT LFSATQTKS++DLARLSL++P+Y+SV+E+ +T TP L QT ++PLE KL+M
Sbjct: 316 PRERQTLLFSATQTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQTLCVIPLEMKLNM 375
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
L+SFIK HL SKI+VF SCKQV++ E FK L PG L L+G+MKQ R+ ++ FC+
Sbjct: 376 LFSFIKTHLTSKIIVFFASCKQVRFAHETFKLLNPGTTLFPLHGKMKQWTRLEVFEDFCK 435
Query: 182 KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
K++ LF TD+A+RGLDF AV+WV+QVDCP+D+ +YIHRVGRTAR ++ G+S+ L P+
Sbjct: 436 KKAGTLFATDIAARGLDF-PAVEWVIQVDCPDDIETYIHRVGRTARNDAPGQSITILLPS 494
Query: 241 EMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHI 299
E M+ + + K+ + N ++L + L++ L + D+++ AQK+F++YLRSV+
Sbjct: 495 EKDGMVNLMEKQKMKFEILEPNPEKLVSIDSKLSSFLSEKTDLKYLAQKSFVSYLRSVYR 554
Query: 300 QKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKE--DKLMIS 357
Q +KE+F + +L+I+EFS SLGL TP I+F + V+ N +K+ DK
Sbjct: 555 QSNKEIFKIQELNINEFSKSLGLLGTPNIQF-GKASADSKNKSFVVSNIQKQLKDKKSKG 613
Query: 358 REKLLPDNFTEENVDRDILETKDIED-EGKADLLEDVMRATRVKKNKKLKINVHR 411
+ + + +++ +R+ + D ED E +D +D + ++ K N+ +
Sbjct: 614 EKDIDSSDDDDDDEERNKIGNSDDEDSEDDSDFQDDSDDDNKKVTKQQPKTNIEK 668
Score = 47 (21.6 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 522 DSDSDNDNDERKQNKDDN 539
D DS++D+D + + DDN
Sbjct: 637 DEDSEDDSDFQDDSDDDN 654
Score = 44 (20.5 bits), Expect = 2.1e-103, Sum P(3) = 2.1e-103
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 420 DEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRAD 462
++E N + L ++ +V D T Y +K++ E+++ D
Sbjct: 721 NKEKNFINDPTKLKFQESTSVPKDGKLPTSYIEKVKSEVEKGD 763
Score = 44 (20.5 bits), Expect = 9.6e-101, Sum P(2) = 9.6e-101
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 522 DSD--SDNDNDERKQNKDDNGPNIDSI 546
DSD D+D+D +K K NI+ +
Sbjct: 643 DSDFQDDSDDDNKKVTKQQPKTNIEKL 669
Score = 39 (18.8 bits), Expect = 2.1e-103, Sum P(3) = 2.1e-103
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 521 FDSDSDNDNDERKQNKDDNGP 541
++SD D+D+DE ++++ P
Sbjct: 836 YNSD-DDDDDEESESEEQPKP 855
Score = 39 (18.8 bits), Expect = 2.1e-103, Sum P(3) = 2.1e-103
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 522 DSDSDNDNDE---RKQNKDDNGPNIDSIS 547
DSD ++++D+ ++ N DD+ + +S S
Sbjct: 821 DSDDESNDDDVWGQEYNSDDDDDDEESES 849
Score = 38 (18.4 bits), Expect = 9.1e-103, Sum P(3) = 9.1e-103
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 432 LADTKNANVSLDQDQKTEYYKKIREE 457
L D KNANV + QK ++ E+
Sbjct: 669 LFDRKNANVMSETYQKLRTKEEDEED 694
Score = 37 (18.1 bits), Expect = 3.5e-103, Sum P(3) = 3.5e-103
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 520 YFDSDSDNDNDERKQNKDDNGPNIDSI 546
YF + D E +N D+ N D +
Sbjct: 805 YFVPPGEKDPYENGENDSDDESNDDDV 831
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 959 (342.6 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
Identities = 179/332 (53%), Positives = 255/332 (76%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E+E + +NILVCTPGR+LQH+D+T F+ LQ+L+LDEADRI+D+GF+K ++AI+ L
Sbjct: 163 EQERLGRMNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHL 222
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
P RQT LFSATQTK V DLARLSL+DP+Y++VHE + +ATP++LQQ ++ PL QKLD
Sbjct: 223 PPERQTLLFSATQTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYVVTPLPQKLDT 282
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
LWSFI+++L SK +VF++S KQV++V+E+F+ ++PGIPL+ L+GR KQ R+ I +F +
Sbjct: 283 LWSFIRSNLKSKTIVFMSSGKQVRFVYESFRHMQPGIPLLHLHGRQKQGGRLDITTRFSQ 342
Query: 182 -KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
+ +VLF TDVA+RGLDF AVDWV+Q+DCPED +YIHRVGRTARY GR+VLFL P+
Sbjct: 343 AQHAVLFSTDVAARGLDF-PAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPS 401
Query: 241 EMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHI 299
E K ML +L + ++ + + Q + L + K P++++ QKAFI+Y++SV+I
Sbjct: 402 EEKGMLRRLEQKRVTVERINVRANKQQSIKNQLQNMCFKDPELKYLGQKAFISYVKSVYI 461
Query: 300 QKDKEVFDVTKLSIDEFSASLGLPMTPKIRFL 331
QKDKE F++ +L +D+F+ASLGLP P+I+F+
Sbjct: 462 QKDKETFNLKELKLDDFAASLGLPGAPRIKFI 493
Score = 70 (29.7 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
Identities = 28/115 (24%), Positives = 53/115 (46%)
Query: 352 DKLMISREKLLPDNFTEENVDRDILETKD---IEDEGKADLLEDVMRATRVKKNKKLKIN 408
D + + + D+ ++ D E KD ++ K L+ D R ++ K+KK K+
Sbjct: 589 DDALHAEDSSASDSDASDSEAEDHTEKKDPKVVKISDKDTLVIDSKRREKLLKSKK-KLL 647
Query: 409 VHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLD-QDQKTEYYKKIREELKRAD 462
+ GT+LV+D+E N L + D + D ++Q+ + + +RAD
Sbjct: 648 KFKGKGTKLVYDDEGNA-HELYEMEDEEAFKARGDAKEQQARFLAEEAARTQRAD 701
Score = 42 (19.8 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 510 ERGRRKKAKIYF---DSDSDNDNDERKQNKD 537
ER +A Y D +SD + ++KQ K+
Sbjct: 500 ERKNASRATAYLTSGDEESDEEGGKKKQPKE 530
Score = 39 (18.8 bits), Expect = 1.6e-98, Sum P(2) = 1.6e-98
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 523 SDSDNDNDERKQNKDDNGPNIDSIS 547
SDSD + E + + + P + IS
Sbjct: 600 SDSDASDSEAEDHTEKKDPKVVKIS 624
Score = 38 (18.4 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 344 VLDNAEKEDKLMISREKLL 362
V+D+ +E KL+ S++KLL
Sbjct: 630 VIDSKRRE-KLLKSKKKLL 647
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 978 (349.3 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
Identities = 188/369 (50%), Positives = 271/369 (73%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E E +N +NILVCTPGRLLQHMDET +F + LQ+L+LDEADRILD+GF +NA++ L
Sbjct: 184 EAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL 243
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
PK RQT LFSATQTKSV+DLARLSLK+P+Y+ VHE++ +TP L+Q ++ L+QK+ +
Sbjct: 244 PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISV 303
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
L+SF+++HL K +VF +SCK+V+Y++ F +LRPG+ ++ L+GR +Q RRM +Y +F
Sbjct: 304 LYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVR 363
Query: 182 KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
KR+ VLF TD+A+RGLDF AV+WV+Q DCPED +YIHR GRTARY G ++L L P+
Sbjct: 364 KRAAVLFATDIAARGLDF-PAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422
Query: 241 EMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ 300
E M+++L + K+P+ K N ++L V L ++L + D++ RAQ+ F++Y+RSV++
Sbjct: 423 EKAMVQQLLQKKVPVKEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLM 482
Query: 301 KDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISREK 360
KDKEVFDV+KL I E++ SLGL + P++RFL QK K P K ++ + + DK++ R
Sbjct: 483 KDKEVFDVSKLPIPEYALSLGLAVAPRVRFL-QKMQKQ-PTKELVRS--QADKVIEPRAP 538
Query: 361 LLPDNFTEE 369
L ++ EE
Sbjct: 539 SLTNDEVEE 547
Score = 45 (20.9 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 509 MERGRRKKAKIYFDSDSDNDNDERKQNKDD 538
+++G ++ D+D N+E+++ +DD
Sbjct: 559 LQKGGKRLEGTEHRQDNDTGNEEQEEEEDD 588
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 978 (349.3 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
Identities = 188/369 (50%), Positives = 271/369 (73%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E E +N +NILVCTPGRLLQHMDET +F + LQ+L+LDEADRILD+GF +NA++ L
Sbjct: 184 EAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL 243
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
PK RQT LFSATQTKSV+DLARLSLK+P+Y+ VHE++ +TP L+Q ++ L+QK+ +
Sbjct: 244 PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISV 303
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
L+SF+++HL K +VF +SCK+V+Y++ F +LRPG+ ++ L+GR +Q RRM +Y +F
Sbjct: 304 LYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVR 363
Query: 182 KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
KR+ VLF TD+A+RGLDF AV+WV+Q DCPED +YIHR GRTARY G ++L L P+
Sbjct: 364 KRAAVLFATDIAARGLDF-PAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422
Query: 241 EMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ 300
E M+++L + K+P+ K N ++L V L ++L + D++ RAQ+ F++Y+RSV++
Sbjct: 423 EKAMVQQLLQKKVPVKEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLM 482
Query: 301 KDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISREK 360
KDKEVFDV+KL I E++ SLGL + P++RFL QK K P K ++ + + DK++ R
Sbjct: 483 KDKEVFDVSKLPIPEYALSLGLAVAPRVRFL-QKMQKQ-PTKELVRS--QADKVIEPRAP 538
Query: 361 LLPDNFTEE 369
L ++ EE
Sbjct: 539 SLTNDEVEE 547
Score = 45 (20.9 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 509 MERGRRKKAKIYFDSDSDNDNDERKQNKDD 538
+++G ++ D+D N+E+++ +DD
Sbjct: 559 LQKGGKRLEGTEHRQDNDTGNEEQEEEEDD 588
>UNIPROTKB|F1P0I3 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074980 IPI:IPI00595697
OMA:ADKVIEP EMBL:AADN02005060 Ensembl:ENSGALT00000027709
Uniprot:F1P0I3
Length = 875
Score = 961 (343.3 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 182/353 (51%), Positives = 260/353 (73%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E E ++ +N+L+CTPGRLLQHMDET F S LQ+LILDEADRILD+GF +NAI+ L
Sbjct: 188 ESERIHHINMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENL 247
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
PK RQT LFSATQTKSV+DLARLSLKDP+Y+ VHE++ +TP L Q ++ L+ K+++
Sbjct: 248 PKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKINV 307
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
L+SF+++HL K +VF SCK+V+Y+F F KL+PG+P++ L+G+ +Q +RM +Y F
Sbjct: 308 LYSFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVR 367
Query: 182 KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
K++ VLF TD+A+RGLDF AV+WV+Q DCPED +YIHRVGRTARY GG ++L L P+
Sbjct: 368 KKAAVLFATDIAARGLDF-PAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPS 426
Query: 241 EMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHI 299
E K M+E+L + K+P++ K N +++ + + A L + +++ +AQ+ F++YLRSV++
Sbjct: 427 EEKGMVEQLAQRKVPVNEIKINPEKITDIQKRMQAFLAQDQELKEKAQRCFVSYLRSVYL 486
Query: 300 QKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKED 352
K+KEVFDV KL + E++ SLGL M P++RFL QK K + VK + +D
Sbjct: 487 MKNKEVFDVFKLPLAEYALSLGLAMAPRVRFL-QKVQKQLSVKETSERNPLKD 538
Score = 56 (24.8 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 29/117 (24%), Positives = 48/117 (41%)
Query: 346 DNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKL 405
D+ + D L + R D F E+ D L + + + K ++ A ++ K KK
Sbjct: 631 DDTKDLDLLTVKRR----DVFDLESKDSPALNASNSKMKKKTTKTQE---AKKILK-KKF 682
Query: 406 KINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRAD 462
K+N TR+VF E+ V + + A + D K+RE L+ D
Sbjct: 683 KVN------TRIVFTEDGELVQQWPPVQKSGLAKADEEDDASGINLDKVREILREED 733
Score = 40 (19.1 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 443 DQDQKTEYYKKIREE 457
D+ K EY KKI+E+
Sbjct: 733 DKFDKEEYRKKIKEK 747
>UNIPROTKB|Q5ZJF6 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
EMBL:AJ720478 IPI:IPI00595697 RefSeq:NP_001073193.1
UniGene:Gga.15096 HSSP:P26196 ProteinModelPortal:Q5ZJF6 SMR:Q5ZJF6
STRING:Q5ZJF6 GeneID:418965 KEGG:gga:418965 CTD:1662
HOVERGEN:HBG102756 InParanoid:Q5ZJF6 OrthoDB:EOG4BK536
NextBio:20822084 Uniprot:Q5ZJF6
Length = 875
Score = 961 (343.3 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 182/353 (51%), Positives = 260/353 (73%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E E ++ +N+L+CTPGRLLQHMDET F S LQ+LILDEADRILD+GF +NAI+ L
Sbjct: 188 ESERIHHINMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENL 247
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
PK RQT LFSATQTKSV+DLARLSLKDP+Y+ VHE++ +TP L Q ++ L+ K+++
Sbjct: 248 PKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKINV 307
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
L+SF+++HL K +VF SCK+V+Y+F F KL+PG+P++ L+G+ +Q +RM +Y F
Sbjct: 308 LYSFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVR 367
Query: 182 KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
K++ VLF TD+A+RGLDF AV+WV+Q DCPED +YIHRVGRTARY GG ++L L P+
Sbjct: 368 KKAAVLFATDIAARGLDF-PAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPS 426
Query: 241 EMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHI 299
E K M+E+L + K+P++ K N +++ + + A L + +++ +AQ+ F++YLRSV++
Sbjct: 427 EEKGMVEQLAQRKVPVNEIKINPEKITDIQKRMQAFLAQDQELKEKAQRCFVSYLRSVYL 486
Query: 300 QKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKED 352
K+KEVFDV KL + E++ SLGL M P++RFL QK K + VK + +D
Sbjct: 487 MKNKEVFDVFKLPLAEYALSLGLAMAPRVRFL-QKVQKQLSVKETSERNPLKD 538
Score = 56 (24.8 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 29/117 (24%), Positives = 48/117 (41%)
Query: 346 DNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKL 405
D+ + D L + R D F E+ D L + + + K ++ A ++ K KK
Sbjct: 631 DDTKDLDLLTVKRR----DVFDLESKDSPALNASNSKMKKKTTKTQE---AKKILK-KKF 682
Query: 406 KINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRAD 462
K+N TR+VF E+ V + + A + D K+RE L+ D
Sbjct: 683 KVN------TRIVFTEDGELVQQWPPVQKSGLAKADEEDDASGINLDKVREILREED 733
Score = 40 (19.1 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 443 DQDQKTEYYKKIREE 457
D+ K EY KKI+E+
Sbjct: 733 DKFDKEEYRKKIKEK 747
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 956 (341.6 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 191/371 (51%), Positives = 267/371 (71%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E E +N +NILVCTPGRLLQHMDET F + LQ+L+LDEADRILD+GF +NAI+ L
Sbjct: 184 EAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 243
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
PK RQT LFSATQTKSV+DLARLSLKDP+Y+ VHE++ +TP L+Q +I L QK+ +
Sbjct: 244 PKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISV 303
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
L+SF+++HL K +VF +SCK+V+Y++ F +LRPGI ++ L+GR +Q RRM +Y +F
Sbjct: 304 LFSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVR 363
Query: 182 KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
KR+ VLF TD+A+RGLDF AV+WV+Q DCPED +YIHR GRTARY G ++L L P+
Sbjct: 364 KRAAVLFATDIAARGLDF-PAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422
Query: 241 EMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHI 299
E + M+++L + K+P+ K N ++L V L + L + D++ RAQ+ F++Y+RSV++
Sbjct: 423 EEQGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYL 482
Query: 300 QKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISRE 359
KDKEVF+V+KL I E++ SLGL + P+IRFL QK K P ++ N E + R
Sbjct: 483 MKDKEVFNVSKLPITEYALSLGLAVAPRIRFL-QKLEKQ-PSTELVKNPVTE--AVPPRA 538
Query: 360 KLLPDNFTEEN 370
LP++ +E+
Sbjct: 539 PSLPNDEADES 549
Score = 48 (22.0 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 369 ENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPL--GTRLVFDEE 422
E+ + + +TK ++ K + ED R + KK K PL G L DEE
Sbjct: 810 EDTNHKMSDTKKKQETRKRNNTEDDDVRPRSRHGKKAKWETVEPLDTGLSLAEDEE 865
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 957 (341.9 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 189/352 (53%), Positives = 257/352 (73%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E E +N +NILVCTPGRLLQHMDET F + LQ+L+LDEADRILD+GF +NAI+ L
Sbjct: 184 EAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 243
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
PK RQT LFSATQTKSV+DLARLSLKDP+Y+ VHE++ +TP L+Q +I L QK+ +
Sbjct: 244 PKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISV 303
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
L+SF+++HL K +VF +SCK+V+Y++ F +LRPGI ++ L+GR +Q RRM +Y +F
Sbjct: 304 LFSFLRSHLTKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVR 363
Query: 182 KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
KR+ VLF TD+A+RGLDF AV+WV+Q DCPED +YIHR GRTARY G ++L L P+
Sbjct: 364 KRAAVLFATDIAARGLDF-PAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422
Query: 241 EMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHI 299
E + M+++L + K+P+ K N ++L V L + L + D++ RAQ+ F++Y+RSV++
Sbjct: 423 EEQGMVQQLLQKKVPVKEIKINPEKLIDVQKRLESFLAQDQDLKERAQRCFVSYIRSVYL 482
Query: 300 QKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKE 351
KDKEVFDV KL I E++ SLGL + P+IRFL QK K P K + N E
Sbjct: 483 MKDKEVFDVNKLPITEYALSLGLAVAPRIRFL-QKMEKQ-PNKELGKNQVTE 532
Score = 40 (19.1 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 369 ENVDRDILETKDIEDEGKADLLE-DVMRATRVKKNKKLKINVHRPL--GTRLVFDEE 422
E+ + +TK ++ K + E D +R R + KK K PL G L DEE
Sbjct: 809 EDTKHKMSDTKKKQEMRKRNNTEVDDVRP-RSRHGKKAKWETLEPLDTGLSLAEDEE 864
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 947 (338.4 bits), Expect = 1.8e-97, Sum P(2) = 1.8e-97
Identities = 198/440 (45%), Positives = 292/440 (66%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E E ++ NI++CTPGRLLQHMDET F S L +L+LDEADRILD+GF LNAIV L
Sbjct: 185 ESEKIHRTNIIICTPGRLLQHMDETATFHASDLHMLVLDEADRILDMGFADTLNAIVENL 244
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
PK RQT LFSATQT+SV+DLARLSLKDP+Y+ VHE++ +TP L+Q ++ L QK++M
Sbjct: 245 PKSRQTLLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNM 304
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
L+SF+++HL KI+VF CK+V+Y+F F +LRPGI ++ L+G+ +Q +R+ +Y F
Sbjct: 305 LYSFLRSHLQKKIIVFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKRVEVYNDFVR 364
Query: 182 KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
K S VLF TD+A+RGLDF AV+WV+Q DCPED +YIHRVGRTARY GG ++L L P+
Sbjct: 365 KTSAVLFATDIAARGLDF-PAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPS 423
Query: 241 EMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHI 299
E K M+ +L+E K+PI+ + N ++L V L A L + + + RAQ+ F++YLRSV++
Sbjct: 424 EEKGMISQLQEKKVPINKIQVNPEKLMSVQQKLEAFLAQEKEQKERAQRCFVSYLRSVYL 483
Query: 300 QKDKEVFDVTKLSIDEFSASLGLPMTPKIRFL-NQKKGKMVPVKPVLDNA--EKEDKLM- 355
K+K+VFDV +L + E++ SLGL + P++RFL ++ + + A + ED+L
Sbjct: 484 MKNKDVFDVLQLKLPEYAMSLGLAVAPRVRFLLKAQQQRRTAAQDDSSTAGHQSEDELQS 543
Query: 356 ----ISREKLLPD-NFTEENVDRDILETKDI-----EDEGKADLLE-DVMRATRVKKNKK 404
+ ++K + + +EE+ D+D L+ + E++ D E D++ K +
Sbjct: 544 FTAQLQQQKTKSEPSQSEEDKDQDSLKPLSLLCGFNEEDDDDDQREADLLTVKSAKTH-- 601
Query: 405 LKINVHRPLGTRLVFDEECN 424
L V+R + V ++ N
Sbjct: 602 LIPEVNRSIQVESVLSQDLN 621
Score = 41 (19.5 bits), Expect = 1.8e-97, Sum P(2) = 1.8e-97
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 513 RRKKAKIYFDSDSDNDNDERKQNKDD 538
+ K+ K D D D+++D+ + D+
Sbjct: 764 QHKEEKRKADGDDDDNDDDEDEGADE 789
Score = 40 (19.1 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 513 RRKKAKIYFDSDSDNDNDERKQNKDDNGPN 542
+ +K K D D DND+DE + ++ P+
Sbjct: 766 KEEKRKADGDDD-DNDDDEDEGADEEFDPS 794
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
Identities = 189/370 (51%), Positives = 269/370 (72%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E E +N +NILVCTPGRLLQHMDET F + LQ+L+LDEADRILD+GF +NAI+ L
Sbjct: 184 EAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 243
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
PK RQT LFSATQTKSV+DLARLSLK+P+Y+ VHE++ +TP L+Q ++ L+QK+ +
Sbjct: 244 PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISV 303
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
L+SF+++HL K +VF +SCK+V+Y++ F +LRPG+ L+ L+GR +Q RRM +Y +F
Sbjct: 304 LYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSLLALHGRQQQMRRMEVYNEFVR 363
Query: 182 KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
KR+ VLF TD+A+RGLDF AV+WV+Q DCPED +YIHR GRTARY G ++L L P+
Sbjct: 364 KRAAVLFATDIAARGLDF-PAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422
Query: 241 EMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHI 299
E K M+++L + K+P+ K N ++L V L + L + D++ RAQ+ FI+Y+RSV++
Sbjct: 423 EEKGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFISYIRSVYL 482
Query: 300 QKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISRE 359
KDKE+FDV+KL I +++ SLGL + P+IRFL Q+ K P K ++ +++K+ R
Sbjct: 483 MKDKEIFDVSKLPISDYALSLGLAVAPRIRFL-QRMQKQ-PSKELV--VSEDNKVTEPRA 538
Query: 360 KLLPDNFTEE 369
L ++ EE
Sbjct: 539 PSLTNDEVEE 548
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 186/370 (50%), Positives = 269/370 (72%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E E +N +NILVCTPGRLLQHMDET F + LQ+L+LDEADRILD+GF +NAI+ L
Sbjct: 184 EAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 243
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
PK RQT LFSATQTKSV+DLARLSLK+P+Y+ VHE++ +TP L+Q ++ L+QK+ +
Sbjct: 244 PKKRQTLLFSATQTKSVKDLARLSLKNPEYIWVHEKAKYSTPATLEQNYIVCELQQKISV 303
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
L+SF+++HL K +VF +SCK+V+Y++ F +LRPGI ++ L+GR +Q RRM +Y +F
Sbjct: 304 LYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVR 363
Query: 182 KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
KRS VLF TD+A+RGLDF AV+WV+Q DCPED +YIHR GRTARY G ++L L P+
Sbjct: 364 KRSAVLFATDIAARGLDF-PAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS 422
Query: 241 EMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHI 299
E K M+++L + K+P+ K N ++L V L + L + D++ RAQ+ F++Y+RSV++
Sbjct: 423 EEKGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDKDLKERAQRCFVSYIRSVYL 482
Query: 300 QKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISRE 359
K+KE+FDV+ L + E++ SLGL + P++RFL QK K P K ++ ++++++ R
Sbjct: 483 MKNKEIFDVSTLPVPEYALSLGLAVAPRVRFL-QKMQKQ-PTKELM--VSQDNQVIEPRA 538
Query: 360 KLLPDNFTEE 369
L ++ EE
Sbjct: 539 PSLTNDEVEE 548
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 865 (309.6 bits), Expect = 1.4e-94, Sum P(3) = 1.4e-94
Identities = 177/364 (48%), Positives = 253/364 (69%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E E ++ +NIL+ TPGR+LQH+D+T FD LQ+L+LDEADRI+D+GF++ ++A+V L
Sbjct: 164 EAEALSRMNILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHL 223
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
P RQT LFSATQ+K V DLARLSLKDP+Y+SVH E+ TATP+ LQQ ++ PL +KLD
Sbjct: 224 PTTRQTLLFSATQSKKVSDLARLSLKDPEYVSVHAEATTATPSTLQQHYIVTPLPEKLDT 283
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-C 180
LW FIKA+L SK++VFL+S KQV++V+E+F++++PGIPL+ ++GR KQ R+ + +F
Sbjct: 284 LWGFIKANLKSKMVVFLSSGKQVRFVYESFRQMQPGIPLLHMHGRQKQLARLDVTKRFDS 343
Query: 181 EKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
K + LF TDV +RG+DF VDWVVQVD PED YIHRVGRTARY G++V+FL P+
Sbjct: 344 SKHACLFATDVIARGIDFT-GVDWVVQVDAPEDTDDYIHRVGRTARYEREGKAVIFLDPS 402
Query: 241 EMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVH- 298
E ML++L K+PI A + + + L ++ K D+++ AQKAFI+Y R+VH
Sbjct: 403 EEAGMLKRLERKKVPITKVTAKDSKKKSIRDELQSICWKSHDVKYLAQKAFISYARAVHR 462
Query: 299 -IQKDK-------EVFDVTKLSIDEFSASLGLPMTPKIRFL---NQKKGKMVPVKPVLDN 347
++D+ +VF KL ++ F+ S+GL P+I+F + K+ K P P+
Sbjct: 463 ATERDEKHNENSDQVFKFDKLDLEGFAKSMGLAGAPQIKFQKGEDVKRMKNAPRAPLSSG 522
Query: 348 AEKE 351
+E E
Sbjct: 523 SEDE 526
Score = 64 (27.6 bits), Expect = 1.4e-94, Sum P(3) = 1.4e-94
Identities = 29/119 (24%), Positives = 53/119 (44%)
Query: 346 DNAEKEDKLMISREKLLPDNFTEENVDRDI-LETKDIEDEGKADLLEDVMRATRVKKNKK 404
+N E+ED ++ L D E L T D G +L+ D R ++ K+KK
Sbjct: 568 ENDEEED-FFTTKRVLRGDELDEAAGGAGAGLPTAKTIDLGGTELVLDSKRREKLIKSKK 626
Query: 405 LKINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQDQ-KTEYYKKIREELKRAD 462
+ + G +LVFD++ PL L D + + + ++ ++ +++K AD
Sbjct: 627 QLAKL-KGKGQKLVFDDD-GVAHPLYTLQDEDDFKQQGPAEALRKQFVEQEGDKVKEAD 683
Score = 46 (21.3 bits), Expect = 1.1e-92, Sum P(3) = 1.1e-92
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 364 DNFTEENVDRDILETKDIEDEG----KADLLEDVMRATRVKKNKKLK 406
D+F ++ + L + +E EG +AD+ +D A + K+ KKLK
Sbjct: 656 DDFKQQG-PAEALRKQFVEQEGDKVKEADI-DDKALAKQKKREKKLK 700
Score = 45 (20.9 bits), Expect = 1.4e-94, Sum P(3) = 1.4e-94
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 514 RKKAKIYFDSDSDNDNDERK 533
+KK K +F DSD DERK
Sbjct: 754 KKKPKKWFQDDSD---DERK 770
Score = 38 (18.4 bits), Expect = 1.7e-88, Sum P(2) = 1.7e-88
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 351 EDKLMISREKLLPDN-FTEENVDRDILETKDIEDEGKADLLED 392
+D+ R K P F +++ D ++K IE + + D LED
Sbjct: 745 DDESEDERPKKKPKKWFQDDSDDERKPKSKVIELDHEPDTLED 787
>CGD|CAL0004182 [details] [associations]
symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
Uniprot:Q5AF95
Length = 765
Score = 862 (308.5 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 175/339 (51%), Positives = 238/339 (70%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
EKE V+ +NILV TPGR+ QH++E + S LQ+L+LDEADR LD+GFKK ++ I+ L
Sbjct: 163 EKERVSRMNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHL 222
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVH-EESVTATPNRLQQTAMIVPLEQKLD 120
P RQT LFSATQ++SV DLARLSL +P + V ++ V+ATP L+Q + VPL++KLD
Sbjct: 223 PTTRQTLLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVPLDEKLD 282
Query: 121 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 180
+LWSFIK+HL SKILVF +S KQV+Y +E F+ L+PGI LM LYGR KQ R+ +F
Sbjct: 283 VLWSFIKSHLKSKILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTMKFS 342
Query: 181 E-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 239
+ + + LF TD+ +RGLDF A+DWVVQVDCPED A+Y+HRVGR+AR+ G+S+L L P
Sbjct: 343 QAQHACLFATDIVARGLDF-PAIDWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLMLLP 401
Query: 240 TEMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVH 298
+E + ML++L+ KI K + + L +L K P M++ Q+AFI Y +SVH
Sbjct: 402 SEEEGMLKRLKIHKIEPKLMNIKQKSKKSIRPQLQSLCFKDPVMKNLGQRAFIAYFKSVH 461
Query: 299 IQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGK 337
IQKDK+VF V +L + ++ASLGLP PKI+ + K
Sbjct: 462 IQKDKDVFKVEELPAESYAASLGLPGAPKIKIKGGESNK 500
Score = 57 (25.1 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 365 NFTEENVDRDILETKDIEDEGKADLLEDV---MRATRVKKNKKLKINV-HRPLGTRLVFD 420
N E+ D D + K + E K + L D+ + + KK K + + T+L FD
Sbjct: 557 NSDGESEDEDFMTVKRKDHELKEEELPDLTIPVSKRQAKKALSRKATLASKGNPTKLKFD 616
Query: 421 EECNTVPPLAMLADTKNANVSLD-QDQKTEYYKKIREELKRAD 462
++ + L D + + D + QK E+ K RE +K +D
Sbjct: 617 DD-GVAHAIYELEDEDDFIKAGDAKKQKEEFVNKERETMKISD 658
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 191/471 (40%), Positives = 289/471 (61%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E+ ++ +NI+VCTPGRLLQHMDE C LQ+L+LDEADR+LD+GF K LN+I++ L
Sbjct: 191 ERNRISGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNL 250
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
P RQT LFSATQT++V+DL R+ DP ++SVHE + ATP+ L+Q+ +IV E K++
Sbjct: 251 PAERQTLLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINA 310
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
LWSFI+AH K LVF++SCKQ +++ EAF +LRPG+P+M L+G M Q +R+ + +F E
Sbjct: 311 LWSFIEAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDE 370
Query: 182 -KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
K +VL TDVASRGLDF +DWV+QVDCP + YIHRVGR+AR + G S+L ++P+
Sbjct: 371 SKAAVLIATDVASRGLDFEH-IDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPS 429
Query: 241 -EMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHI 299
E M+ KL + IPI K + + V L A+L + +++ AQK+ + YLRS++
Sbjct: 430 QEEAMIGKLEKHSIPIEELKIHPDAMSDVRVKLRAILAESQELKEYAQKSIVAYLRSIYT 489
Query: 300 QKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQK---KGKMVPVKPVLDNAEKEDKLMI 356
KDK+VFDV + + S GL P++RFLN+K G+ + K V + E+E+ ++
Sbjct: 490 MKDKKVFDVEAIDAAALADSFGLVSVPRVRFLNKKAKKSGEKLMEKEVKE--EEEEASLV 547
Query: 357 SREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTR 416
+ + D+ V + E + I++E A+ + ++ + K K LK V + +
Sbjct: 548 GKFAIDEDDEDIFTVKKPTGEPEQIKEEEAAEKISNIT----ISKTKPLKKAVTKVSAAK 603
Query: 417 LVFDEEC--NTVPPLAMLADTKNANVSLDQDQKTEY---YKKIREELKRAD 462
+ +++ NT D + + T Y +K R+E+K D
Sbjct: 604 KILNKKLKVNTKKTFGA-EDDELEELEEGPSTITSYGLDIEKARQEIKSGD 653
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 825 (295.5 bits), Expect = 5.0e-87, Sum P(2) = 5.0e-87
Identities = 177/344 (51%), Positives = 240/344 (69%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E E ++ +NIL+ TPGR+LQH+D+ + S LQ+L+LDEADR LD+GFKK L+AIVS L
Sbjct: 156 ELERISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTL 215
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEE---SVT---ATPNRLQQTAMIVPL 115
RQT LFSATQ++SV DLARLSL D + + H+ SV +TP LQQ + VPL
Sbjct: 216 SPSRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPL 275
Query: 116 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAI 175
KLD+L+SFIK+HL K++VFL+S KQV +V+E F+K++PGI LM L+GR KQ R
Sbjct: 276 ADKLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTET 335
Query: 176 YAQFCEKRSV-LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSV 234
+F + V LF TDV +RG+DF AVDWVVQVDCPEDV +YIHRVGR ARY G+S+
Sbjct: 336 LDKFNRAQQVCLFATDVVARGIDF-PAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSL 394
Query: 235 LFLTPTEMK-MLEKLREAKI-P--IHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAF 290
+ LTP E + L++L KI P ++ ++ K ++P L +LL K P++++ QKAF
Sbjct: 395 IMLTPQEQEAFLKRLNARKIEPGKLNIKQSKKKSIKPQ---LQSLLFKDPELKYLGQKAF 451
Query: 291 ITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQK 334
I+Y+RS+++QKDK+VF +L +EF+ SLGLP PKI+ K
Sbjct: 452 ISYVRSIYVQKDKQVFKFDELPTEEFAYSLGLPGAPKIKMKGMK 495
Score = 64 (27.6 bits), Expect = 5.0e-87, Sum P(2) = 5.0e-87
Identities = 28/112 (25%), Positives = 54/112 (48%)
Query: 349 EKEDKLMISREKL-LPDNFTEENVDRDILETKDIEDE-GKADL----LEDVMRATRVKKN 402
E++++ ++S L + +E+ D D + K + E +A+L L RA + +
Sbjct: 539 ERKNQTILSEHYLNITKAQAQEDEDDDFISVKRKDHEINEAELPALTLPTSRRAQKKALS 598
Query: 403 KKLKINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQD-QKTEYYKK 453
KK + + ++L+FD+E P+ L D + + D + QKTE+ K
Sbjct: 599 KKASL-ASKGNASKLIFDDE-GEAHPVYELEDEEEFHKRGDAEVQKTEFLTK 648
Score = 42 (19.8 bits), Expect = 1.0e-84, Sum P(2) = 1.0e-84
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 430 AMLADTKNANVSLDQDQKTEYYKKIREELKR 460
A++AD N + + +++K E +K E ++R
Sbjct: 651 AVMADIDNIDKQVAKEKKQEKKRKRLEAMRR 681
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
Identities = 139/336 (41%), Positives = 213/336 (63%)
Query: 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+ LP RQ
Sbjct: 299 NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 358
Query: 67 TFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
T LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q ++ P E++ +L++F
Sbjct: 359 TMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTF 418
Query: 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 184
+K + K++VF +SCK VKY +E + +P++ ++GR KQ++R + QFC S
Sbjct: 419 LKKNRKKKLMVFFSSCKSVKYHYELLNYI--DLPVLAIHGRQKQNKRTTTFFQFCNADSG 476
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEMK 243
+L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+
Sbjct: 477 ILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILHPEELG 535
Query: 244 MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDK 303
L L+++K+P+ + + ++ + L L+ K + AQ+A+ +Y+R+ K
Sbjct: 536 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLK 595
Query: 304 EVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 338
++F+V L++ + + S G + P + +N GK+
Sbjct: 596 QIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNDGKL 631
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 139/336 (41%), Positives = 213/336 (63%)
Query: 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+ LP RQ
Sbjct: 301 NGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 360
Query: 67 TFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
T LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q ++ P E++ +L++F
Sbjct: 361 TMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTF 420
Query: 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 184
+K + K++VF +SCK VKY +E + +P++ ++GR KQ++R + QFC S
Sbjct: 421 LKKNRKKKLMVFFSSCKSVKYHYELLNYI--DLPVLAIHGRQKQNKRTTTFFQFCNADSG 478
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEMK 243
+L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+
Sbjct: 479 ILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELG 537
Query: 244 MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDK 303
L L+++K+P+ + + ++ + L L+ K + AQ+A+ +Y+R+ K
Sbjct: 538 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLK 597
Query: 304 EVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 338
++F+V L++ + + S G + P + +N GK+
Sbjct: 598 QIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNDGKV 633
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 139/336 (41%), Positives = 213/336 (63%)
Query: 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+ LP RQ
Sbjct: 326 NGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 385
Query: 67 TFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
T LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q ++ P E++ +L++F
Sbjct: 386 TMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTF 445
Query: 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 184
+K + K++VF +SCK VKY +E + +P++ ++GR KQ++R + QFC S
Sbjct: 446 LKKNRKKKLMVFFSSCKSVKYHYELLNYI--DLPVLAIHGRQKQNKRTTTFFQFCNADSG 503
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEMK 243
+L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+
Sbjct: 504 ILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELG 562
Query: 244 MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDK 303
L L+++K+P+ + + ++ + L L+ K + AQ+A+ +Y+R+ K
Sbjct: 563 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLK 622
Query: 304 EVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 338
++F+V L++ + + S G + P + +N GK+
Sbjct: 623 QIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNDGKV 658
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 139/336 (41%), Positives = 213/336 (63%)
Query: 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+ LP RQ
Sbjct: 297 NGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 356
Query: 67 TFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
T LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q ++ P E++ +L++F
Sbjct: 357 TMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTF 416
Query: 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 184
+K + K++VF +SCK VKY +E + +P++ ++GR KQ++R + QFC S
Sbjct: 417 LKKNRKKKLMVFFSSCKSVKYHYELLNYI--DLPVLAIHGRQKQNKRTTTFFQFCNADSG 474
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEMK 243
+L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+
Sbjct: 475 ILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELG 533
Query: 244 MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDK 303
L L+++K+P+ + + ++ + L L+ K + AQ+A+ +Y+R+ K
Sbjct: 534 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLK 593
Query: 304 EVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 338
++F+V L++ + + S G + P + +N GK+
Sbjct: 594 QIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNDGKV 629
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 139/336 (41%), Positives = 213/336 (63%)
Query: 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+ LP RQ
Sbjct: 304 NGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 363
Query: 67 TFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
T LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q ++ P E++ +L++F
Sbjct: 364 TMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTF 423
Query: 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 184
+K + K++VF +SCK VKY +E + +P++ ++GR KQ++R + QFC S
Sbjct: 424 LKKNRKKKLMVFFSSCKSVKYHYELLNYI--DLPVLAIHGRQKQNKRTTTFFQFCNADSG 481
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEMK 243
+L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+
Sbjct: 482 ILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELG 540
Query: 244 MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDK 303
L L+++K+P+ + + ++ + L L+ K + AQ+A+ +Y+R+ K
Sbjct: 541 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLK 600
Query: 304 EVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 338
++F+V L++ + + S G + P + +N GK+
Sbjct: 601 QIFNVNNLNLPQVALSFGFKVPPFVDLNVNTNDGKV 636
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 139/336 (41%), Positives = 213/336 (63%)
Query: 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+ LP RQ
Sbjct: 300 NGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 359
Query: 67 TFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
T LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q ++ P E++ +L++F
Sbjct: 360 TMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTF 419
Query: 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 184
+K + K++VF +SCK VKY +E + +P++ ++GR KQ++R + QFC S
Sbjct: 420 LKKNRKKKLMVFFSSCKSVKYHYELLNYI--DLPVLAIHGRQKQNKRTTTFFQFCNADSG 477
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEMK 243
+L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+
Sbjct: 478 ILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELG 536
Query: 244 MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDK 303
L L+++K+P+ + + ++ + L L+ K + AQ+A+ +Y+R+ K
Sbjct: 537 FLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLK 596
Query: 304 EVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 338
++F+V L++ + + S G + P + +N GK+
Sbjct: 597 QIFNVNNLNLPQVALSFGFKVPPFVDLNVNTNDGKV 632
>FB|FBgn0030855 [details] [associations]
symbol:CG5800 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007526 "larval somatic muscle development"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0022008 EMBL:AE014298
GO:GO:0006200 GO:GO:0003723 GO:GO:0007526 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 OMA:ADKVIEP HSSP:P10081 EMBL:AY119628
RefSeq:NP_573230.1 UniGene:Dm.13464 SMR:Q9VX34 STRING:Q9VX34
EnsemblMetazoa:FBtr0074453 GeneID:32742 KEGG:dme:Dmel_CG5800
UCSC:CG5800-RA FlyBase:FBgn0030855 InParanoid:Q9VX34
OrthoDB:EOG4MCVFH GenomeRNAi:32742 NextBio:780142 Uniprot:Q9VX34
Length = 826
Score = 660 (237.4 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 135/256 (52%), Positives = 175/256 (68%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E+ +++ NIL+CTPGRLLQHMDE P F+ S +++L+LDEADR LD+GF+K LN+I+
Sbjct: 187 ERTRMDQCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENF 246
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSV-----HEE-----------SVTATPNR 105
P RQT LFSATQT +VQDLARL+LKDP Y+ EE +V A P
Sbjct: 247 PPVRQTLLFSATQTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPEL 306
Query: 106 LQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 165
LQQ+ +++ LE K+ MLWSFIK HL KI+VF+ SCKQ KY++E F KLRPG PL+ LYG
Sbjct: 307 LQQSYVVLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYG 366
Query: 166 RMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTA 225
+ QDRR+AIY F K V+ + + AV+WVVQ+DCPEDV+ YIHR GR+A
Sbjct: 367 TLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSA 426
Query: 226 RYNSGGRSVLFLTPTE 241
R + G +L LTP+E
Sbjct: 427 RNKTRGECLLVLTPSE 442
Score = 609 (219.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 132/307 (42%), Positives = 200/307 (65%)
Query: 98 SVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPG 157
+V A P LQQ+ +++ LE K+ MLWSFIK HL KI+VF+ SCKQ KY++E F KLRPG
Sbjct: 299 AVLAVPELLQQSYVVLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPG 358
Query: 158 IPLMCLYGRMKQDRRMAIYAQFCEKRSV-LFCTDVASRGLDFNKAVDWVVQVDCPEDVAS 216
PL+ LYG + QDRR+AIY F K V +F TDVASRGLDF AV+WVVQ+DCPEDV+
Sbjct: 359 SPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDF-PAVNWVVQLDCPEDVSQ 417
Query: 217 YIHRVGRTARYNSGGRSVLFLTPTEMK-MLEKLREA-KIPIHFTKANTKRLQPVSGLLAA 274
YIHR GR+AR + G +L LTP+E + M+ L+E I I + + K+L + A
Sbjct: 418 YIHRAGRSARNKTRGECLLVLTPSEEEYMISALKEQLNIDIRCVQIDPKKLFSPRVKIEA 477
Query: 275 LLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQ- 333
L ++P+++ AQ+AF++Y++SV + ++K +F+V L +D F+ SLGL +TP++ FL +
Sbjct: 478 FLAQFPELRATAQRAFLSYIKSVFLMRNKRLFNVFSLDLDAFAQSLGLAVTPRVPFLEKF 537
Query: 334 --KKGKMVPVKPVLDNAEKEDKLM--ISREKLLP--DNFTEENVDRDILETK--DIEDEG 385
++ ++ K DNA+ + L+ +++++ D E + D D ++ K D + EG
Sbjct: 538 LWRQKQLQQQKEQGDNAKSINPLLSKLTKQQSFGGGDEDEENSDDEDFIKVKRKDHDVEG 597
Query: 386 KADLLED 392
+ L++
Sbjct: 598 EPVKLDE 604
Score = 43 (20.2 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 514 RKKAKIYFDSDSDNDNDERKQNKDDNGPNIDSIS 547
RKKA+ ++ +DE +Q DDN + S S
Sbjct: 716 RKKAE-----EAKGSDDEEEQQDDDNADDAGSES 744
Score = 41 (19.5 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 508 SMERGRRKKAKIYFDSDSDNDNDERKQNK 536
++++ + +K+ FD + + D+R Q K
Sbjct: 634 ALKKNLQVNSKLKFDDEGETMADDRSQMK 662
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 137/335 (40%), Positives = 210/335 (62%)
Query: 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+ LP RQ
Sbjct: 300 NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 359
Query: 67 TFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
T LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q ++ P E++ +L++F
Sbjct: 360 TMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTF 419
Query: 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 184
+K + K++VF +SC VKY +E + +P++ ++G+ KQ++R + QFC S
Sbjct: 420 LKKNRKKKLMVFFSSCMSVKYHYELLNYI--DLPVLAIHGKQKQNKRTTTFFQFCNADSG 477
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEMK 243
L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+
Sbjct: 478 TLLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELG 536
Query: 244 MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDK 303
L L+++K+P+ + ++ + L L+ K + AQ+A+ +Y+R+ K
Sbjct: 537 FLRYLKQSKVPLSEFDFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLK 596
Query: 304 EVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGK 337
++F+V L++ + + S G + P + +N +GK
Sbjct: 597 QIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNEGK 631
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 136/337 (40%), Positives = 213/337 (63%)
Query: 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 65
+N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+ LP R
Sbjct: 289 LNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARR 348
Query: 66 QTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS 124
QT LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q ++ P E++ +L++
Sbjct: 349 QTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFT 408
Query: 125 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS 184
F+K + K++VF +SC VKY +E + +P++ ++G+ KQ++R + QFC S
Sbjct: 409 FLKKNRKKKVMVFFSSCMSVKYHYELLNYI--DLPVLAIHGKQKQNKRTTTFFQFCNADS 466
Query: 185 -VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEM 242
+L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+
Sbjct: 467 GILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 525
Query: 243 KMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKD 302
L L+++K+P++ + ++ + L L+ K + AQ+A+ +Y+R+
Sbjct: 526 GFLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSL 585
Query: 303 KEVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 338
K++F+V L++ + + S G + P + ++ GK+
Sbjct: 586 KQIFNVNNLNLPQVALSFGFKVPPFVDLNVSSHDGKL 622
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 136/337 (40%), Positives = 213/337 (63%)
Query: 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 65
+N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+ LP R
Sbjct: 303 LNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARR 362
Query: 66 QTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS 124
QT LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q ++ P E++ +L++
Sbjct: 363 QTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFT 422
Query: 125 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS 184
F+K + K++VF +SC VKY +E + +P++ ++G+ KQ++R + QFC S
Sbjct: 423 FLKKNRKKKVMVFFSSCMSVKYHYELLNYI--DLPVLAIHGKQKQNKRTTTFFQFCNADS 480
Query: 185 -VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEM 242
+L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+
Sbjct: 481 GILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 539
Query: 243 KMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKD 302
L L+++K+P++ + ++ + L L+ K + AQ+A+ +Y+R+
Sbjct: 540 GFLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSL 599
Query: 303 KEVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 338
K++F+V L++ + + S G + P + ++ GK+
Sbjct: 600 KQIFNVNNLNLPQVALSFGFKVPPFVDLNVSSHDGKL 636
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 136/337 (40%), Positives = 213/337 (63%)
Query: 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 65
+N +NI+V TPGRLL HM TP F LQ L++DEADRILDVGF++ L I+ LP R
Sbjct: 291 LNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARR 350
Query: 66 QTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS 124
QT LFSATQT+ V+DLAR+SLK +P Y+ V ++ AT + L+Q ++ P E++ +L++
Sbjct: 351 QTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFT 410
Query: 125 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS 184
F+K + K++VF +SC VKY +E + +P++ ++G+ KQ++R + QFC S
Sbjct: 411 FLKKNRKKKVMVFFSSCMSVKYHYELLNYI--DLPVLAIHGKQKQNKRTTTFFQFCNADS 468
Query: 185 -VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEM 242
+L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+
Sbjct: 469 GILLCTDVAARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 527
Query: 243 KMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKD 302
L L+++K+P++ + ++ + L L+ K + AQ+A+ +Y+R+
Sbjct: 528 GFLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSL 587
Query: 303 KEVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGKM 338
K++F+V L++ + + S G + P + ++ GK+
Sbjct: 588 KQIFNVNNLNLPQVALSFGFKVPPFVDLNVSSHDGKL 624
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 135/337 (40%), Positives = 211/337 (62%)
Query: 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
N +NI+V TPGRLL HM TP F LQ L++DEADRIL+VGF++ + I+ LPK RQ
Sbjct: 287 NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQ 346
Query: 67 TFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
T LFSATQT+ V+DLA++SLK +P Y+ V + TAT + L+Q ++ P E++ +L++F
Sbjct: 347 TMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKETATVDGLEQGYVVCPSEKRFLLLFTF 406
Query: 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 184
+K + K++VF +SC VKY +E + +P++ ++G+ KQ +R + QFC S
Sbjct: 407 LKKNRKKKLMVFFSSCMSVKYHYELLNYI--DLPVLAIHGKQKQTKRTTTFFQFCNAESG 464
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVAS--YIHRVGRTAR-YNSGGRSVLFLTPTE 241
+L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E
Sbjct: 465 ILLCTDVAARGLDIPE-VDWIVQYDPPDDPKQKEYIHRVGRTARGINGRGHALLILRPEE 523
Query: 242 MKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQK 301
+ L L++A++P+ + + ++ + L L+ K + AQ+A+ Y+R+
Sbjct: 524 LGFLRYLKQARVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKAYIRAYDSHS 583
Query: 302 DKEVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKGK 337
K++++V L +++ S S G + P + +N +G+
Sbjct: 584 LKQIYNVGNLDLNKVSLSFGFKVPPYVDLNVNSNQGR 620
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 137/334 (41%), Positives = 209/334 (62%)
Query: 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
N +NILV TPGRLL H+ TP F LQ LI+DEADRIL+VGF++ L I+ LPK RQ
Sbjct: 282 NGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRQ 341
Query: 67 TFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
+ LFSATQT+ V+DLAR+SLK +P Y+ V + TAT L+Q ++ P E++ +L++F
Sbjct: 342 SMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLFTF 401
Query: 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 184
+K + K++VF +SC VK+ +E + +P+M ++G+ KQ +R + QFC S
Sbjct: 402 LKKNRKKKLMVFFSSCMSVKFHYELLNYI--DLPVMAIHGKQKQTKRTTTFFQFCNADSG 459
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEMK 243
+L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+
Sbjct: 460 ILLCTDVAARGLDIPE-VDWIVQFDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELG 518
Query: 244 MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDK 303
L L++AK+P+ + + ++ + L L+ K + AQ+A+ +Y+R+ K
Sbjct: 519 FLRFLKQAKVPLSEFEFSWTKISDIQSQLDKLIEKNYYLHKSAQEAYKSYVRAYDSHSLK 578
Query: 304 EVFDVTKLSIDEFSASLGLPMTPKIRF-LNQKKG 336
++++V L + + + S G + P + ++ KG
Sbjct: 579 QIYNVETLDLPKVAMSFGFKVPPFVDLNVHSSKG 612
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 132/332 (39%), Positives = 212/332 (63%)
Query: 1 MEKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVS 59
+E E + + +NILV TPGRLL H+ +P+F LQ LI+DE DRIL++GF++ L I++
Sbjct: 301 VESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIIN 360
Query: 60 QLPKHRQTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQK 118
LPK RQT LFSATQT ++ L++L+LK +P Y+ VH+ TAT + L+Q ++ P E++
Sbjct: 361 LLPKRRQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKR 420
Query: 119 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQ 178
L +L++F+K + K++VF +SC VKY E F + +P+ ++G+ KQ +R + Q
Sbjct: 421 LLVLFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYI--DLPVTSIHGKQKQTKRTTTFFQ 478
Query: 179 FCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN-SGGRSVLF 236
FC S +L CTDVA+RGLD + VDW+VQ D P+D YIHRVGRTAR + + G ++L
Sbjct: 479 FCNAESGILLCTDVAARGLDIPQ-VDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLL 537
Query: 237 LTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRS 296
+ P E+ L L+ AK+P++ + + +++ + L L+ K + A++AF +Y+R+
Sbjct: 538 MRPEELGFLRYLKAAKVPLNEFEFSWQKIADIQLQLEKLIAKNYFLNQSAKEAFKSYVRA 597
Query: 297 VHIQKDKEVFDVTKLSIDEFSASLGLPMTPKI 328
+ K++F+V L + + S G + P +
Sbjct: 598 YDSHQLKQIFNVNTLDLQAVAKSFGFLVPPVV 629
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 136/332 (40%), Positives = 205/332 (61%)
Query: 2 EKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
E E + + +N+L+ TPGRLL H+ TP F L+ L++DEADRIL+VGF+ + I+
Sbjct: 243 EAEKLTKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKI 302
Query: 61 LPKH-RQTFLFSATQTKSVQDLARLSLKD-PQYLSVHEESVTATPNRLQQTAMIVPLEQK 118
LP RQT LFSATQT V+DLAR+SL+ P Y++V +T L+Q +I +++
Sbjct: 303 LPNEDRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKR 362
Query: 119 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQ 178
+L+SF+K +L KI+VF +SC VKY E + +P++ L+G+ KQ +R + +
Sbjct: 363 FLLLFSFLKRNLKKKIIVFFSSCNCVKYHAELLNYI--DLPVLDLHGKQKQQKRTNTFFE 420
Query: 179 FCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLF 236
FC K+ VL CTDVA+RGLD AVDW++Q D P+D YIHRVGRTAR +G GRS++F
Sbjct: 421 FCNAKQGVLICTDVAARGLDI-PAVDWIIQFDPPDDTRDYIHRVGRTARGANGRGRSLMF 479
Query: 237 LTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRS 296
L P+E+ L+ L+EA++P+ K++ V L L+ + + A+ + +YL++
Sbjct: 480 LQPSEVGFLKYLKEARVPVVEFDFPAKKIVNVQSQLEKLISQNYYLNKSAKDGYRSYLQA 539
Query: 297 VHIQKDKEVFDVTKLSIDEFSASLGLPMTPKI 328
+ VFDV KL + + + S G P+I
Sbjct: 540 YASHSLRSVFDVHKLDLVKVAKSFGFSTPPRI 571
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 132/336 (39%), Positives = 206/336 (61%)
Query: 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-KH 64
V +N+LV TPGRLL H+ T F L+ L++DEADRIL++GF+ + I+ LP ++
Sbjct: 209 VKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSEN 268
Query: 65 RQTFLFSATQTKSVQDLARLSLKD-PQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 123
RQT LFSATQT V+DLAR+SLK P Y++V T+T L+Q ++V +++ +L+
Sbjct: 269 RQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLF 328
Query: 124 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 182
SF+K +L K++VF++SC VKY+ E + +P++ L+G+ KQ RR + +FC +
Sbjct: 329 SFLKRNLKKKVIVFMSSCASVKYMAELLNYI--DLPVLDLHGKQKQQRRTNTFFEFCNAE 386
Query: 183 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFLTPTE 241
+ +L CT+VA+RGLD AVDW+VQ D P+D YIHRVGRTAR G G+S++FL P+E
Sbjct: 387 KGILLCTNVAARGLDI-PAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSE 445
Query: 242 MKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQK 301
+ L L+ AK+ ++ + ++ V L L+ K +Q A+ + +YL++
Sbjct: 446 LGFLRYLKTAKVSLNEFEFPANKVANVQSQLEKLVSKNYYLQQSAKDGYRSYLQAYASYS 505
Query: 302 DKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGK 337
K +FD+ KL + + + S G P + G+
Sbjct: 506 LKSIFDINKLDLAKVAKSFGFAHPPNVNITIGASGR 541
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 132/340 (38%), Positives = 210/340 (61%)
Query: 2 EKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
E+E + + +N+LV TPGRLL H+ T F L+ LI+DEADRIL+VGF++ ++ I+ +
Sbjct: 234 EEERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKK 293
Query: 61 LPKHRQTFLFSATQTKSVQDLARLSLKD-PQYLSVHEESVTATPNRLQQTAMIVPLEQKL 119
+PK RQT LFSATQT+ V D+A++SL + P Y+ V +E +T L+Q ++ P E++
Sbjct: 294 VPKTRQTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERRF 353
Query: 120 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
+L++F+K +L+ KI+VFL+SC VKY E + IP++ L+GR KQ +R + +F
Sbjct: 354 LLLYTFLKKNLSKKIIVFLSSCNAVKYTAELLNYI--DIPVLELHGRQKQQKRTNTFYEF 411
Query: 180 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFL 237
++ +L CTDVA+RGLD +VDW++Q D P+D YIHRVGRTAR GR++LFL
Sbjct: 412 VNAEKGILICTDVAARGLDI-PSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFL 470
Query: 238 TPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSV 297
P E+ L+ L+ AK+P++ + ++ V L ++ + + + A+ A+ Y+ +
Sbjct: 471 LPKELGFLKYLKLAKVPLNEYEFPKSKIANVQDQLEKVVSQNFYLYNSARDAYKAYICAY 530
Query: 298 HIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGK 337
K++FDV L + + + G PK+ GK
Sbjct: 531 ASHSLKDIFDVNALDLQCVAKAFGFLDPPKVNLNVNSSGK 570
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 130/324 (40%), Positives = 204/324 (62%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-KHRQT 67
+N+LV TPGRLL H+ T F S L+ L++DEADRIL++GF+ + I+ LP ++RQ+
Sbjct: 231 VNLLVATPGRLLDHLKNT-QFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQS 289
Query: 68 FLFSATQTKSVQDLARLSLKD-PQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 126
LFSATQT V+DLAR+SL+ P Y++V E +T + L+Q ++ +++ +L+SF+
Sbjct: 290 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFL 349
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
K ++ KI+VFL+SC VK+ E + +P++ L+G+ KQ +R + +FC K+ +
Sbjct: 350 KRNVKKKIIVFLSSCNSVKFYSELLNYI--DLPVLDLHGKQKQQKRTNTFFEFCNAKQGI 407
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFLTPTEMKM 244
L CTDVA+RGLD AVDW+VQ D P+D YIHRVGRTAR G G+S++FLTP+E+
Sbjct: 408 LVCTDVAARGLDI-PAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGF 466
Query: 245 LEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKE 304
L L+ AK+P++ + ++ + L L+ + A+ + YL++ K
Sbjct: 467 LRYLKAAKVPLNEYEFPANKIANIQSQLTKLIKTNYLLNQSAKDGYRAYLQAYASHGLKT 526
Query: 305 VFDVTKLSIDEFSASLGLPMTPKI 328
V+ + KL + + SAS GL P++
Sbjct: 527 VYQIDKLDLKKVSASFGLDQVPRV 550
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 130/324 (40%), Positives = 204/324 (62%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-KHRQT 67
+N+LV TPGRLL H+ T F S L+ L++DEADRIL++GF+ + I+ LP ++RQ+
Sbjct: 231 VNLLVATPGRLLDHLKNT-QFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQS 289
Query: 68 FLFSATQTKSVQDLARLSLKD-PQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 126
LFSATQT V+DLAR+SL+ P Y++V E +T + L+Q ++ +++ +L+SF+
Sbjct: 290 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFL 349
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
K ++ KI+VFL+SC VK+ E + +P++ L+G+ KQ +R + +FC K+ +
Sbjct: 350 KRNVKKKIIVFLSSCNSVKFYSELLNYI--DLPVLDLHGKQKQQKRTNTFFEFCNAKQGI 407
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFLTPTEMKM 244
L CTDVA+RGLD AVDW+VQ D P+D YIHRVGRTAR G G+S++FLTP+E+
Sbjct: 408 LVCTDVAARGLDI-PAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGF 466
Query: 245 LEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKE 304
L L+ AK+P++ + ++ + L L+ + A+ + YL++ K
Sbjct: 467 LRYLKAAKVPLNEYEFPANKIANIQSQLTKLIKTNYLLNQSAKDGYRAYLQAYASHGLKT 526
Query: 305 VFDVTKLSIDEFSASLGLPMTPKI 328
V+ + KL + + SAS GL P++
Sbjct: 527 VYQIDKLDLKKVSASFGLDQVPRV 550
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 129/333 (38%), Positives = 203/333 (60%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH-RQT 67
+N+L+ TPGRLL H+ T F L+ LI+DEADRIL++GF+ + I+ LP RQ+
Sbjct: 165 VNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQS 224
Query: 68 FLFSATQTKSVQDLARLSLKD-PQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 126
LFSATQT V+DLAR+SL+ P +++V E+ +T + L+Q ++ +++ +L+SF+
Sbjct: 225 MLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFL 284
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
K + KI+VFL+SC VKY E + +P++ L+G+ KQ +R + +FC +R +
Sbjct: 285 KRNQKKKIIVFLSSCNSVKYYAELLNYI--DLPVLELHGKQKQQKRTNTFFEFCNAERGI 342
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFLTPTEMKM 244
L CTDVA+RGLD AVDW++Q D P+D YIHRVGRTAR G G+S++FLTP E+
Sbjct: 343 LICTDVAARGLDI-PAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGF 401
Query: 245 LEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKE 304
L L+ +K+P++ + ++ V L L+ + A+ + +YL++ K
Sbjct: 402 LRYLKASKVPLNEYEFPENKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAYASHSLKT 461
Query: 305 VFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGK 337
V+ + KL + + + S G P+ PK+ GK
Sbjct: 462 VYQIDKLDLAKVAKSYGFPVPPKVNITIGASGK 494
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 133/351 (37%), Positives = 211/351 (60%)
Query: 2 EKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
EK+ + + ++ILV TPGRLL H+ T NF ++ LI+DEADRILD+GF+ + ++
Sbjct: 183 EKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRH 242
Query: 61 LPKHRQTFLFSATQTKSVQDLARLSL-KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKL 119
LPK RQ+ LFSAT + V +L +L+L +P +SVHE++ AT LQQ ++ P +++L
Sbjct: 243 LPKQRQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRL 302
Query: 120 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
+L++F+K + K++VF +SC VK+ E + IP M ++G+ KQ +R + QF
Sbjct: 303 LLLFTFLKKNKTKKVMVFFSSCNSVKFHHELLNYI--DIPCMSIHGKQKQQKRTTTFFQF 360
Query: 180 CEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFL 237
C+ + +L CTDVA+RGLD AVDW+VQ D ++ YIHRVGRTAR +G G+++L L
Sbjct: 361 CQAETGILLCTDVAARGLDI-PAVDWIVQYDPTDEPREYIHRVGRTARGTNGSGKALLVL 419
Query: 238 TPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSV 297
P E+ L L+ AK+ ++ + + ++ + L L+ K + A++A+ YLR+
Sbjct: 420 RPEELGFLRYLKAAKVTLNEFEFSWSKVANIQSQLENLISKNYYLNKSAKEAYKCYLRAY 479
Query: 298 HIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNA 348
K++FDVT + + S S G + P + K K V ++ L A
Sbjct: 480 DSHSLKDIFDVTNMDLTAVSKSFGFSVPPFVDLPISNKPK-VEIRSKLSGA 529
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 129/329 (39%), Positives = 197/329 (59%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
N+++ TPGRLL H+ T F L+ L++DEADRIL+ F++ +N I+ LPK RQT L
Sbjct: 213 NLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTAL 272
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSATQT V+DLAR+SL P ++ V + T L+Q +VP +Q+L +L SF+K +
Sbjct: 273 FSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKKN 332
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 188
LN KI+VF ++CK V++ E K + + ++G M Q+RR + F + K+ +L C
Sbjct: 333 LNKKIMVFFSTCKSVQFHTEIMKI--SDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLC 390
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFLTPTEMKMLEK 247
TDVA+RGLD +VDW++Q D P+ YIHRVGRTAR G+++L L P E++ +
Sbjct: 391 TDVAARGLDI-PSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFIRY 449
Query: 248 LREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFD 307
L+ AK+P+ + N KRL V L + K ++ A+ A+ YL + + K++F+
Sbjct: 450 LKAAKVPVKELEFNEKRLSNVQSALEKCVAKDYNLNKLAKDAYRAYLSAYNSHSLKDIFN 509
Query: 308 VTKLSIDEFSASLGLPMTPKIRFLNQKKG 336
V +L + + S PK+ LN + G
Sbjct: 510 VHRLDLLAVAESFCFSSPPKVN-LNIESG 537
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 130/341 (38%), Positives = 206/341 (60%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
+K+ ++ +NIL+ TPGRLL HM T F L LI+DEADR+L +GF++ +N I+ +L
Sbjct: 264 KKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRL 323
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
PK RQT LFSATQT V+ L RLSL+ P ++ V + AT RLQQ +V +++ +
Sbjct: 324 PKKRQTALFSATQTTKVESLIRLSLQKPIFIEVTTK--IATVERLQQGYALVDEDKRFLL 381
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-C 180
L++F+K +++ KI+VF +C V++ + + IP C++G+ KQ++R+ + F
Sbjct: 382 LFTFLKKNMSKKIMVFFNNCMSVQFYNDLLNYI--DIPTYCIHGKKKQNKRLKSFHDFSA 439
Query: 181 EKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTP 239
K ++L CT+VA+RGLD V++++Q D P+D YIHRVGRT R +S G +++FL
Sbjct: 440 AKCAILLCTNVAARGLDIPN-VNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMK 498
Query: 240 TEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHI 299
E+K L L+ IPI+ + +L + + +++ K + A++AF +YL
Sbjct: 499 HELKFLNYLKFYNIPINQFAYDPNKLINIQSHIQSIVTKNFHLHKMAREAFKSYLNGYIT 558
Query: 300 QKDKEVFDVTKLSIDEFSASLGLPMTPKIRF---LNQKKGK 337
K+VFDV L++ S + GL + PK+ LN KK K
Sbjct: 559 YALKDVFDVNNLNLLLTSKNFGLEVPPKVDLNLKLNVKKKK 599
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 130/341 (38%), Positives = 206/341 (60%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
+K+ ++ +NIL+ TPGRLL HM T F L LI+DEADR+L +GF++ +N I+ +L
Sbjct: 264 KKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRL 323
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM 121
PK RQT LFSATQT V+ L RLSL+ P ++ V + AT RLQQ +V +++ +
Sbjct: 324 PKKRQTALFSATQTTKVESLIRLSLQKPIFIEVTTK--IATVERLQQGYALVDEDKRFLL 381
Query: 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-C 180
L++F+K +++ KI+VF +C V++ + + IP C++G+ KQ++R+ + F
Sbjct: 382 LFTFLKKNMSKKIMVFFNNCMSVQFYNDLLNYI--DIPTYCIHGKKKQNKRLKSFHDFSA 439
Query: 181 EKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTP 239
K ++L CT+VA+RGLD V++++Q D P+D YIHRVGRT R +S G +++FL
Sbjct: 440 AKCAILLCTNVAARGLDIPN-VNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMK 498
Query: 240 TEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHI 299
E+K L L+ IPI+ + +L + + +++ K + A++AF +YL
Sbjct: 499 HELKFLNYLKFYNIPINQFAYDPNKLINIQSHIQSIVTKNFHLHKMAREAFKSYLNGYIT 558
Query: 300 QKDKEVFDVTKLSIDEFSASLGLPMTPKIRF---LNQKKGK 337
K+VFDV L++ S + GL + PK+ LN KK K
Sbjct: 559 YALKDVFDVNNLNLLLTSKNFGLEVPPKVDLNLKLNVKKKK 599
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 130/339 (38%), Positives = 200/339 (58%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+N+LV TPGRLL H++ T F L+ L++DEADRIL+ F++ L I++ LPK RQT
Sbjct: 277 VNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTS 336
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSATQ+ V+DLAR+SL P Y+ V E T L+Q +VP +L L +F+K
Sbjct: 337 LFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKR 396
Query: 129 HLNSK-ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VL 186
K I+VF ++CK K+ E F+ ++ + + G + Q++R + QF + + +L
Sbjct: 397 FQGKKKIMVFFSTCKSTKFHAELFRYIK--FDCLEIRGGIDQNKRTPTFLQFIKAETGIL 454
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFLTPTEMKML 245
CT+VA+RGLDF VDW+VQ D P++ YIHRVGRTAR G+++L LTP E+K +
Sbjct: 455 LCTNVAARGLDFPH-VDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFI 513
Query: 246 EKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEV 305
+ L+ AKIP+ + K+L V + L+ + ++ A++A+ TY+ K+V
Sbjct: 514 QYLKAAKIPVEEHEFEEKKLLDVKPFVENLISENYALKESAKEAYKTYISGYDSHSMKDV 573
Query: 306 FDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPV 344
F+V +L++ E + S G PK+ + G +PV
Sbjct: 574 FNVHQLNLTEVATSFGFSDPPKVALKIDRGGYRSKREPV 612
>UNIPROTKB|F1MW45 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 IPI:IPI00726158 UniGene:Bt.74315
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:DAAA02045235
Ensembl:ENSBTAT00000009556 Uniprot:F1MW45
Length = 601
Score = 533 (192.7 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 140/418 (33%), Positives = 226/418 (54%)
Query: 10 NILVCTPGRLLQHMD-ETPNFD---CSQ-LQILILDEADRILDVGFKKALNAIVSQLPKH 64
NI+V TPGRL + D C + L++L+LDEADR+LD+GF+ ++N I+ LPK
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQ 195
Query: 65 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTAMIVPLEQKL 119
R+T LFSATQT+ V++L R L++P +SV E+ V A TP+RL+ M+ ++K
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMVCKADEKF 255
Query: 120 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
+ L F++ H K LVF ++C V+Y +A + L G+ +MC++G+MK +R I+ +F
Sbjct: 256 NQLVHFLRNHKQEKHLVFFSTCACVEYYGKALETLVKGVKIMCIHGKMKY-KRNKIFMEF 314
Query: 180 CEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
+ +S +L CTDV +RG+D + V+WV+Q D P + ++++HR GRTAR GG +++FL
Sbjct: 315 RKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLL 373
Query: 239 PTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLR 295
P E + L K P+ K NT L P L A+ + + + KAF++Y++
Sbjct: 374 PMEESYISFLAINQKCPLQEMKLQKNTADLLPK---LKAMALGDRAVFEKGMKAFVSYVQ 430
Query: 296 SVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKMVPVKPVLDNAEKEDKL 354
+ + +F + L + L PK+ L K+ VPV D +DK+
Sbjct: 431 AYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDVNTDTIPFKDKI 490
Query: 355 MISREKLLPDNFTEENVDRDILETKDIEDEGKADLLED-VMRATRVKKNKKLKINVHR 411
REK E+ + E++G+ +++ + KK KK K+ R
Sbjct: 491 ---REKQRQKQLLEQQ------RKEKTENDGRRKFIKNKAWSKQKAKKEKKKKLTEKR 539
Score = 52 (23.4 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 377 ETKDIEDEGKADLLEDVMRATRVKKNK 403
E D+EDE +LL D + KK K
Sbjct: 543 EGSDVEDEDMEELLNDTRLLKKFKKGK 569
>UNIPROTKB|Q2NL08 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:BC111255 IPI:IPI00726158
RefSeq:NP_001039472.1 UniGene:Bt.74315 PRIDE:Q2NL08 GeneID:508581
KEGG:bta:508581 CTD:57696 HOGENOM:HOG000268803 HOVERGEN:HBG107796
InParanoid:Q2NL08 KO:K14809 OrthoDB:EOG4WH8KN NextBio:20868584
Uniprot:Q2NL08
Length = 601
Score = 533 (192.7 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 140/418 (33%), Positives = 226/418 (54%)
Query: 10 NILVCTPGRLLQHMD-ETPNFD---CSQ-LQILILDEADRILDVGFKKALNAIVSQLPKH 64
NI+V TPGRL + D C + L++L+LDEADR+LD+GF+ ++N I+ LPK
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQ 195
Query: 65 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTAMIVPLEQKL 119
R+T LFSATQT+ V++L R L++P +SV E+ V A TP+RL+ M+ ++K
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMVCKADEKF 255
Query: 120 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
+ L F++ H K LVF ++C V+Y +A + L G+ +MC++G+MK +R I+ +F
Sbjct: 256 NQLVHFLRNHKQEKHLVFFSTCACVEYYGKALETLVKGVKIMCIHGKMKY-KRNKIFMEF 314
Query: 180 CEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
+ +S +L CTDV +RG+D + V+WV+Q D P + ++++HR GRTAR GG +++FL
Sbjct: 315 RKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLL 373
Query: 239 PTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLR 295
P E + L K P+ K NT L P L A+ + + + KAF++Y++
Sbjct: 374 PMEESYISFLAINQKCPLQEMKLQKNTADLLPK---LKAMALGDRAVFEKGMKAFVSYVQ 430
Query: 296 SVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKMVPVKPVLDNAEKEDKL 354
+ + +F + L + L PK+ L K+ VPV D +DK+
Sbjct: 431 AYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDVNTDTIPFKDKI 490
Query: 355 MISREKLLPDNFTEENVDRDILETKDIEDEGKADLLED-VMRATRVKKNKKLKINVHR 411
REK E+ + E++G+ +++ + KK KK K+ R
Sbjct: 491 ---REKQRQKQLLEQQ------RKEKTENDGRRKFIKNKAWSKQKAKKEKKKKLTEKR 539
Score = 52 (23.4 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 377 ETKDIEDEGKADLLEDVMRATRVKKNK 403
E D+EDE +LL D + KK K
Sbjct: 543 EGSDVEDEDMEELLNDTRLLKKFKKGK 569
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 142/419 (33%), Positives = 227/419 (54%)
Query: 10 NILVCTPGRLLQHMD-ETPNFD---CSQ-LQILILDEADRILDVGFKKALNAIVSQLPKH 64
NI+V TPGRL + D C + L +L+LDEADR+LD+GF+ ++N I+ LPK
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195
Query: 65 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTAMIVPLEQKL 119
R+T LFSATQT+ V++L R L++P +SV E+ V A TP+RL+ M+ ++K
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKF 255
Query: 120 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
+ L F++ H K LVF ++C V+Y +A + L G+ +MC++G+MK +R I+ +F
Sbjct: 256 NQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKMKY-KRNKIFMEF 314
Query: 180 CEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
+ +S +L CTDV +RG+D + V+WV+Q D P + ++++HR GRTAR GG +++FL
Sbjct: 315 RKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLL 373
Query: 239 PTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLR 295
P E + L K P+ K NT L P L ++ + + + KAF++Y++
Sbjct: 374 PMEESYINFLAINQKCPLQEMKPQRNTADLLPK---LKSMALADRAVFEKGMKAFVSYVQ 430
Query: 296 SVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKMVPVKPVLDNAEKEDKL 354
+ + +F + L + L PK+ L K+ VPV D +DK+
Sbjct: 431 AYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDVNTDTIPFKDKI 490
Query: 355 MIS-REKLLPDNFTEENVDRDILETKDIEDEGKADLLED-VMRATRVKKNKKLKINVHR 411
R+KLL E+ E+EG+ +++ + KK KK K+N R
Sbjct: 491 REKQRQKLLEQQRREKT-----------ENEGRRKFIKNKAWSKQKAKKEKKKKMNEKR 538
>UNIPROTKB|F1RFL5 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969 OMA:CACVEYW
EMBL:CU468658 RefSeq:XP_001927747.2 UniGene:Ssc.4554
UniGene:Ssc.95961 Ensembl:ENSSSCT00000010713 GeneID:100157342
KEGG:ssc:100157342 Uniprot:F1RFL5
Length = 600
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 143/426 (33%), Positives = 226/426 (53%)
Query: 3 KEHVNELNILVCTPGRLLQHMD-ETPNFD---C-SQLQILILDEADRILDVGFKKALNAI 57
KEH NI+V TPGRL + D C L +L+LDEADR+LD+GF+ ++N I
Sbjct: 131 KEHGG--NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTI 188
Query: 58 VSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTAMI 112
+ LPK R+T LFSATQT+ V++L R L++P +SV E+ A TP+RL+ M+
Sbjct: 189 LEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGAAASSTQKTPSRLENYYMV 248
Query: 113 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRR 172
++K + L F++ H K LVF ++C V+Y +A + L + +MC++G+MK +R
Sbjct: 249 CKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEALVRSVKIMCIHGKMKY-KR 307
Query: 173 MAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG 231
I+ +F + +S +L CTDV +RG+D + V+WV+Q D P ++++HR GRTAR GG
Sbjct: 308 NKIFMEFRQLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSSASAFVHRCGRTARIGHGG 366
Query: 232 RSVLFLTPTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGLLAALLVKYPDMQHRAQK 288
+++FL P E + L K P+ K NT L P L ++ + + + K
Sbjct: 367 SALVFLLPMEESYVNFLAINQKCPLQAMKLQKNTVDLLPK---LKSMALADRAVFEKGMK 423
Query: 289 AFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKMVPVKPVLDN 347
AF++Y+++ + +F + L + L PK+ L K+ VPV D
Sbjct: 424 AFVSYVQAYAKHECNLIFRLKDLDFASIARGFALLRMPKMPELRGKQFPDFVPVDVNTDT 483
Query: 348 AEKEDKLMIS-REKLLPDNFTEENVDRDILETKDIEDEGKADLLED-VMRATRVKKNKKL 405
+DK+ R+KLL E+ E+EG+ +++ + KK KK
Sbjct: 484 IPFKDKIREKQRQKLLEQQRKEKT-----------ENEGRRKFIKNKAWSKQKAKKEKKK 532
Query: 406 KINVHR 411
K+N R
Sbjct: 533 KMNEKR 538
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 137/417 (32%), Positives = 226/417 (54%)
Query: 10 NILVCTPGRLLQHMD-ETPNFD---C-SQLQILILDEADRILDVGFKKALNAIVSQLPKH 64
NI+V TPGRL + D C L++L+LDEADR+LD+GF+ ++N I+ LPK
Sbjct: 136 NIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQ 195
Query: 65 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTAMIVPLEQKL 119
R+T LFSATQT+ V+ L R L++P +SV E+ V A TP+RL+ M+ ++K
Sbjct: 196 RRTGLFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKF 255
Query: 120 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
+ L F++ H K L+F ++C V+Y +A + L + +MC++G+MK +R I+ +F
Sbjct: 256 NQLVHFLRNHKQEKHLIFFSTCACVEYYGKALEALVKSVKIMCIHGKMKH-KRNKIFMEF 314
Query: 180 CEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
+ +S +L CTDV +RG+D + V+WV+Q D P ++++HR GRTAR GG +++FL
Sbjct: 315 RKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLL 373
Query: 239 PTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLR 295
P E + L K P+ K NT L P L ++ + + + KAF++Y++
Sbjct: 374 PMEESYVTFLEINQKCPLQEMKLQKNTGDLLPK---LKSMALADRAVFEKGMKAFVSYVQ 430
Query: 296 SVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKMVPVKPVLDNAEKEDKL 354
+ + +F + L + L PK+ L ++ VP +N +DK+
Sbjct: 431 AYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGRQFPDFVPADVDTNNIPFKDKI 490
Query: 355 MISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHR 411
REK ++ ++R E + E+EG+ ++ + KK KK ++N R
Sbjct: 491 ---REKQ-----RQKLLERQRKEKR--ENEGRKNIKNKAWSKQKAKKEKKKRMNEKR 537
>UNIPROTKB|F6XWM4 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969
Ensembl:ENSCAFT00000035837 EMBL:AAEX03014637 OMA:DADNVFA
Uniprot:F6XWM4
Length = 734
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 137/417 (32%), Positives = 226/417 (54%)
Query: 10 NILVCTPGRLLQHMD-ETPNFD---C-SQLQILILDEADRILDVGFKKALNAIVSQLPKH 64
NI+V TPGRL + D C L++L+LDEADR+LD+GF+ ++N I+ LPK
Sbjct: 271 NIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQ 330
Query: 65 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTAMIVPLEQKL 119
R+T LFSATQT+ V+ L R L++P +SV E+ V A TP+RL+ M+ ++K
Sbjct: 331 RRTGLFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKF 390
Query: 120 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
+ L F++ H K L+F ++C V+Y +A + L + +MC++G+MK +R I+ +F
Sbjct: 391 NQLVHFLRNHKQEKHLIFFSTCACVEYYGKALEALVKSVKIMCIHGKMKH-KRNKIFMEF 449
Query: 180 CEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
+ +S +L CTDV +RG+D + V+WV+Q D P ++++HR GRTAR GG +++FL
Sbjct: 450 RKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLL 508
Query: 239 PTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLR 295
P E + L K P+ K NT L P L ++ + + + KAF++Y++
Sbjct: 509 PMEESYVTFLEINQKCPLQEMKLQKNTGDLLPK---LKSMALADRAVFEKGMKAFVSYVQ 565
Query: 296 SVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKMVPVKPVLDNAEKEDKL 354
+ + +F + L + L PK+ L ++ VP +N +DK+
Sbjct: 566 AYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGRQFPDFVPADVDTNNIPFKDKI 625
Query: 355 MISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHR 411
REK ++ ++R E + E+EG+ ++ + KK KK ++N R
Sbjct: 626 ---REKQ-----RQKLLERQRKEKR--ENEGRKNIKNKAWSKQKAKKEKKKRMNEKR 672
>TAIR|locus:2825324 [details] [associations]
symbol:AT1G71370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0003723 EMBL:AC016163 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AK118294 IPI:IPI00527105
RefSeq:NP_177293.1 UniGene:At.70349 ProteinModelPortal:Q8GXD6
SMR:Q8GXD6 PRIDE:Q8GXD6 EnsemblPlants:AT1G71370.1 GeneID:843478
KEGG:ath:AT1G71370 GeneFarm:1028 TAIR:At1g71370 InParanoid:Q8GXD6
OMA:EYLKCEA PhylomeDB:Q8GXD6 ProtClustDB:CLSN2914591
Genevestigator:Q8GXD6 GermOnline:AT1G71370 Uniprot:Q8GXD6
Length = 558
Score = 503 (182.1 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 134/397 (33%), Positives = 207/397 (52%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
N+L+ TPGRL M D L+ILILDEADR+LD+GF+K +N I+S+LPK R+T L
Sbjct: 144 NLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGL 203
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSATQT++V DLA+ L++ + ES + T + L + +QK L + +
Sbjct: 204 FSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQLVHLLIEN 263
Query: 130 LNSKILVFLTSCKQVKY---VFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-V 185
N K++VF +C V Y V L+ I +G+M Q R A F E S V
Sbjct: 264 KNKKLVVFFMTCACVDYWGLVLSKIPTLK-SISFFSTHGKMDQKGRDTALASFTEASSGV 322
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L CTDVA+RGLD +D+VVQ D P+D +IHRVGRTAR GR+++FL P E +
Sbjct: 323 LLCTDVAARGLDI-PGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPKETDYV 381
Query: 246 EKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEV 305
E +R ++P+ K + + V ++ +L +K + + +AF++++R+ +
Sbjct: 382 EFMRIRRVPLQERKCS-ENASDVIPIIRSLAIKDRAVLEKGLQAFVSFVRAYKEHHCSYI 440
Query: 306 FDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMI-SREKLLPD 364
F L I + + G+ P I + Q + +V PV ++ K SREK
Sbjct: 441 FSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKYKNKSREKQRQQ 500
Query: 365 NFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKK 401
N D+ E + + + ++D +A+R +K
Sbjct: 501 NLLARK-DKLQQEKRGKRKKSSKEAVDDSNKASRKRK 536
Score = 39 (18.8 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 510 ERGRRKKAKIYFDSDSDNDNDERK 533
+RG+RKK+ DS+ + +RK
Sbjct: 513 KRGKRKKSSKEAVDDSNKASRKRK 536
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 149/475 (31%), Positives = 242/475 (50%)
Query: 3 KEHVNELNILVCTPGRL----LQHMDETPNFDC-SQLQILILDEADRILDVGFKKALNAI 57
KEH NI+V TPGRL + D C L +L+LDEADR+LD+GF+ +LNAI
Sbjct: 131 KEHGG--NIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAI 188
Query: 58 VSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTAT-----PNRLQQTAMI 112
++ LPK R+T LFSATQT+ V++L R L++P +SV E+ V AT P RL+ MI
Sbjct: 189 LAFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMI 248
Query: 113 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRR 172
++K + L F++ H K LVF ++C V+Y +A + L + +MC++G+MK +R
Sbjct: 249 CKADEKFNQLVHFLRQHKQEKHLVFFSTCACVEYYGKALESLIKQVKIMCIHGKMKH-KR 307
Query: 173 MAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG 231
I+ +F +L CTDV +RG+D + V WV+Q D P ++++HR GRTAR + G
Sbjct: 308 NKIFTEFRRLAGGILVCTDVMARGIDIPE-VHWVLQYDPPSSASAFVHRCGRTARIGNAG 366
Query: 232 RSVLFLTPTEMKMLEKLR-EAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAF 290
+++FL P E + L K P+ + L + L + L + + KAF
Sbjct: 367 SALVFLLPMEESYINFLSINQKCPMQEMQPQRNVLDLLPKLKSMALADRAVFE-KGMKAF 425
Query: 291 ITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVP-VKPVLDNAE 349
++Y+++ + +F + L + L PK+ L +GK P PV N +
Sbjct: 426 VSYIQAYAKHECNLIFRIKDLDFASLAKGFALLKMPKMPEL---RGKCFPDFTPVTVNTD 482
Query: 350 K---EDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRAT-RVKKNKKL 405
+DK +REK ++ +R+ E EGK +++ + + K+ KK
Sbjct: 483 SIPFKDK---NREKQRQKQLEQQRKERE-------ESEGKKKFIKNKSWSKQKAKREKKR 532
Query: 406 KINVHRPL--GTRLVFDEECNTVPPLAMLADTKNANVSLDQDQK--TEYYKKIRE 456
K+ R G+ + ++ + +L K +S ++ +K T K +E
Sbjct: 533 KLTAKRKREEGSDMEDEDMEELLNDTRLLKRLKKGKISEEEFEKRLTGSQSKFKE 587
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 149/475 (31%), Positives = 242/475 (50%)
Query: 3 KEHVNELNILVCTPGRL----LQHMDETPNFDC-SQLQILILDEADRILDVGFKKALNAI 57
KEH NI+V TPGRL + D C L +L+LDEADR+LD+GF+ +LNAI
Sbjct: 131 KEHGG--NIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAI 188
Query: 58 VSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTAT-----PNRLQQTAMI 112
++ LPK R+T LFSATQT+ V++L R L++P +SV E+ V AT P RL+ MI
Sbjct: 189 LAFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMI 248
Query: 113 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRR 172
++K + L F++ H K LVF ++C V+Y +A + L + +MC++G+MK +R
Sbjct: 249 CKADEKFNQLVHFLRQHKQEKHLVFFSTCACVEYYGKALESLIKQVKIMCIHGKMKH-KR 307
Query: 173 MAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG 231
I+ +F +L CTDV +RG+D + V WV+Q D P ++++HR GRTAR + G
Sbjct: 308 NKIFTEFRRLAGGILVCTDVMARGIDIPE-VHWVLQYDPPSSASAFVHRCGRTARIGNAG 366
Query: 232 RSVLFLTPTEMKMLEKLR-EAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAF 290
+++FL P E + L K P+ + L + L + L + + KAF
Sbjct: 367 SALVFLLPMEESYINFLSINQKCPMQEMQPQRNVLDLLPKLKSMALADRAVFE-KGMKAF 425
Query: 291 ITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVP-VKPVLDNAE 349
++Y+++ + +F + L + L PK+ L +GK P PV N +
Sbjct: 426 VSYIQAYAKHECNLIFRIKDLDFASLAKGFALLKMPKMPEL---RGKCFPDFTPVTVNTD 482
Query: 350 K---EDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRAT-RVKKNKKL 405
+DK +REK ++ +R+ E EGK +++ + + K+ KK
Sbjct: 483 SIPFKDK---NREKQRQKQLEQQRKERE-------ESEGKKKFIKNKSWSKQKAKREKKR 532
Query: 406 KINVHRPL--GTRLVFDEECNTVPPLAMLADTKNANVSLDQDQK--TEYYKKIRE 456
K+ R G+ + ++ + +L K +S ++ +K T K +E
Sbjct: 533 KLTAKRKREEGSDMEDEDMEELLNDTRLLKRLKKGKISEEEFEKRLTGSQSKFKE 587
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 141/437 (32%), Positives = 231/437 (52%)
Query: 3 KEHVNELNILVCTPGRLLQHMD-ETPNFD---C-SQLQILILDEADRILDVGFKKALNAI 57
K+H NI+V TPGRL + D C L +L+LDEADR+LD+GF+ ++N I
Sbjct: 131 KQHGG--NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTI 188
Query: 58 VSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTAMI 112
+ LPK R+T LFSATQT+ V++L R L++P +SV E+ V A TP+RL+ MI
Sbjct: 189 LEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMI 248
Query: 113 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRR 172
++K + L F+++ K LVF ++C V+Y +A + L + ++C++G+MK +R
Sbjct: 249 CKADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKMKY-KR 307
Query: 173 MAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG 231
I+ +F + +S +L CTDV +RG+D + V+WV+Q D P + ++++HR GRTAR GG
Sbjct: 308 NKIFMEFRKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSNASAFVHRCGRTARIGHGG 366
Query: 232 RSVLFLTPTEMKMLEKLR-EAKIPIH--FTKANTKRLQPVSGLLAALLVKYPDMQHRAQK 288
+++FL P E + L K P+ + NT L P L A+ + + + K
Sbjct: 367 SALVFLLPMEEAYINFLAINQKCPLQEMSLQRNTIDLLPK---LRAMALADRAVFEKGMK 423
Query: 289 AFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKMVPVKPVLDN 347
AF++++++ + +F + L + L P++ L K+ VPV D
Sbjct: 424 AFVSFVQAYAKHECSLIFRLKDLDFAGLARGFALLRMPRMPELRGKQFPDFVPVDIDTDT 483
Query: 348 AEKEDKLMIS-REKLLPDNFTEENVDRDILETKDIEDEGKADLLED-VMRATRVKKNKKL 405
+DK+ R+KLL E + E+EG+ +++ + KK +K
Sbjct: 484 IPFKDKIREKQRQKLLEQKRKERS-----------ENEGRKKFIKNKAWSKQKAKKERKK 532
Query: 406 KINVHRPLGTRLVFDEE 422
K+N R D+E
Sbjct: 533 KMNAKRKKDEGSDIDDE 549
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 140/437 (32%), Positives = 230/437 (52%)
Query: 3 KEHVNELNILVCTPGRLLQHMD-ETPNFDCSQ----LQILILDEADRILDVGFKKALNAI 57
K+H NI+V TPGRL + D + L +L+LDEADR+LD+GF+ ++N I
Sbjct: 131 KQHGG--NIIVATPGRLEDMFRRKAEGLDLASYVKSLDVLVLDEADRLLDMGFEASINTI 188
Query: 58 VSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTAMI 112
+ LPK R+T LFSATQT+ V++L R L++P +SV E+ V A TP+RL+ MI
Sbjct: 189 LEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMI 248
Query: 113 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRR 172
++K + L F+++ K LVF ++C V+Y +A + L + ++C++G+MK +R
Sbjct: 249 CKADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALVQRVKILCIHGKMKY-KR 307
Query: 173 MAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG 231
I+ +F + +S +L CTDV +RG+D + V+WV+Q D P + ++++HR GRTAR GG
Sbjct: 308 NKIFMEFRKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSNASAFVHRCGRTARIGHGG 366
Query: 232 RSVLFLTPTEMKMLEKLR-EAKIPIH--FTKANTKRLQPVSGLLAALLVKYPDMQHRAQK 288
+++FL P E + L K P+ + NT L P L A+ + + + K
Sbjct: 367 SALVFLLPMEEAYINFLAINQKCPLQEMSLQRNTVDLLPK---LRAMALADRAVFEKGMK 423
Query: 289 AFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK-GKMVPVKPVLDN 347
AF++++++ + +F + L + L P++ L K+ VPV D
Sbjct: 424 AFVSFVQAYAKHECSLIFRLKDLDFAGLARGFALLRMPRMPELKGKQFPDFVPVDIDTDT 483
Query: 348 AEKEDKLMIS-REKLLPDNFTEENVDRDILETKDIEDEGKADLLED-VMRATRVKKNKKL 405
+DK+ R+KLL E E+EG+ +++ + KK +K
Sbjct: 484 IPFKDKIREKQRQKLLEQKRKERT-----------ENEGRRKFIKNKAWSKQKAKKERKK 532
Query: 406 KINVHRPLGTRLVFDEE 422
K+N R D+E
Sbjct: 533 KMNAKRKKDEGSDIDDE 549
>DICTYBASE|DDB_G0291588 [details] [associations]
symbol:ddx55 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0291588 GO:GO:0005524
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14809
OMA:HEKKVET RefSeq:XP_635318.1 ProteinModelPortal:Q54EC2
STRING:Q54EC2 EnsemblProtists:DDB0234215 GeneID:8628262
KEGG:ddi:DDB_G0291588 ProtClustDB:CLSZ2429585 Uniprot:Q54EC2
Length = 663
Score = 479 (173.7 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 127/402 (31%), Positives = 214/402 (53%)
Query: 10 NILVCTPGR----LLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 65
NIL+ TPGR L + + F + ++LILDEADR+LD+GF +N+I+ +LPK R
Sbjct: 180 NILIGTPGRTDEFLTRVVRNDQQFKFKEFEMLILDEADRLLDMGFHLPINSILLKLPKQR 239
Query: 66 QTFLFSATQTKSVQDLARLSLKDP-------QYLSVHEESVTATPNRLQQTAMIVPLEQK 118
+T LFSATQT V++LAR +++P +++ HE+ + P L MIVP+E++
Sbjct: 240 RTGLFSATQTSEVKELARTGMRNPFKVSVSVKHIETHEDQ--SIPTTLDNRYMIVPVEER 297
Query: 119 LDMLWSFIKAHLN-SKILVFLTSCKQVKYVFEAFK--KLRPGIPLMCLYGRMKQDRRMAI 175
L+ L F+ H++ +KI+++ +C V Y F+ + K+ G P L+G+ +R+ +
Sbjct: 298 LNQLVHFLLNHIDKNKIIIYFLTCSTVDYFFKILQSVKVLSGKPFFSLHGKAPHSQRIKV 357
Query: 176 YAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSV 234
+ F + + L TD+A+RGLD VDWV+Q D P+D +++HR+GRTAR G ++
Sbjct: 358 FDSFSQATNGCLLSTDLAARGLDIPN-VDWVLQYDSPQDPKAFVHRIGRTARMGRDGNAL 416
Query: 235 LFLTPTEMKMLEKLREAKIP-IHFTKA-NTKRLQPVSGLLAALLVKYPDMQHRAQKAFIT 292
+FL+P E +E L+ K+P + KA N + P + + ++ + A ++
Sbjct: 417 IFLSPEEDSYIEFLKIKKVPLVEMVKAENVTNVLPE---IKKISFNDREIMEKGVIAMVS 473
Query: 293 YLRSVHIQKDKEVFDVTKLSIDEFSASLGL---PMTPKIR--FLNQKKGKMVPVKPVLDN 347
++R +F +L+I + GL P P+IR L + +L
Sbjct: 474 HVRGYKEHLCPYIFVFHRLNIGLLATGFGLLYLPRMPEIRDKTLIAEWTSGYTKDQILKI 533
Query: 348 AEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADL 389
A KE K +++L N + ++D E +D +E K L
Sbjct: 534 AYKEKKK--EKQRLEKVNKIKLKKEKDAKERQDAINEKKRKL 573
Score = 38 (18.4 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 522 DSDSDNDNDERKQNKDD 538
D++ +N+ DE + ++D
Sbjct: 644 DTEQNNNEDEEDEEEED 660
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 118/334 (35%), Positives = 192/334 (57%)
Query: 10 NILVCTPGRLLQHMD-ETPNFD---C-SQLQILILDEADRILDVGFKKALNAIVSQLPKH 64
NI+V TPGRL + D C L++L+LDEADR+LD+GF+ ++N I+ LPK
Sbjct: 136 NIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQ 195
Query: 65 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTAMIVPLEQKL 119
R+T LFSATQT+ V+ L R L++P +SV E+ V A TP+RL+ M+ ++K
Sbjct: 196 RRTGLFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKF 255
Query: 120 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
+ L F++ H K L+F ++C V+Y +A + L + +MC++G+MK +R I+ +F
Sbjct: 256 NQLVHFLRNHKQEKHLIFFSTCACVEYYGKALEALVKSVKIMCIHGKMKH-KRNKIFMEF 314
Query: 180 CEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
+ +S +L CTDV +RG+D + V+WV+Q D P ++++HR GRTAR GG +++FL
Sbjct: 315 RKLQSGILVCTDVMARGIDIPE-VNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLL 373
Query: 239 PTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLR 295
P E + L K P+ K NT L P L ++ + + + KAF++Y++
Sbjct: 374 PMEESYVTFLEINQKCPLQEMKLQKNTGDLLPK---LKSMALADRAVFEKGMKAFVSYVQ 430
Query: 296 SVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIR 329
+ + +F + + A L +P P++R
Sbjct: 431 AYAKHECNLIFRLKAKILARGFALLRMPKMPELR 464
>FB|FBgn0037561 [details] [associations]
symbol:CG9630 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P10081 KO:K14809
GeneTree:ENSGT00550000074969 EMBL:AY051513 RefSeq:NP_649777.1
UniGene:Dm.1101 ProteinModelPortal:Q9VHU1 SMR:Q9VHU1 IntAct:Q9VHU1
STRING:Q9VHU1 PaxDb:Q9VHU1 PRIDE:Q9VHU1 EnsemblMetazoa:FBtr0081866
GeneID:40974 KEGG:dme:Dmel_CG9630 UCSC:CG9630-RA
FlyBase:FBgn0037561 InParanoid:Q9VHU1 OMA:CACVEYW OrthoDB:EOG4TDZ1Q
PhylomeDB:Q9VHU1 GenomeRNAi:40974 NextBio:821545 Bgee:Q9VHU1
GermOnline:CG9630 Uniprot:Q9VHU1
Length = 613
Score = 471 (170.9 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 120/343 (34%), Positives = 189/343 (55%)
Query: 11 ILVCTPGRL---LQHMDETPNF--DCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 65
ILVCTPGRL Q + N L+ L+LDEADR+LD+GFK ++N I+ LP+ R
Sbjct: 139 ILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPRQR 198
Query: 66 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
+T LFSATQT V DL R L++P +SV E++ TP RLQ IV E K L F
Sbjct: 199 RTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQNFYRIVEPELKFVALLEF 258
Query: 126 IK--AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK- 182
+ A + K++VF +C V+Y EA L P ++ ++G+MK ++R + +F
Sbjct: 259 LSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHGKMK-NKRANVVEKFRNTP 317
Query: 183 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE- 241
++VL CTDV +RGLD + ++WVVQ D P +S++HRVGRTAR + G +++FL P+E
Sbjct: 318 QAVLLCTDVLARGLDVPE-IEWVVQWDPPSTASSFVHRVGRTARQGNEGNALVFLLPSED 376
Query: 242 -----MKMLEKLREAKIPIHFTK---ANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITY 293
+K+ +K+ K+ + K+L V L L + + +AF+++
Sbjct: 377 AYVHFLKINQKVELTKLLTEEAEDADREKKKLPAVLDQLHRLQAADKGVYDKGMRAFVSH 436
Query: 294 LRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKG 336
+R+ + + + L + + + + GL P++ L +G
Sbjct: 437 VRAYTKHECSAILRLKDLDLGKMATAYGLLQLPRMPELKNYQG 479
Score = 37 (18.1 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 441 SLDQDQKTEYYKKIREELKRA 461
S DQ +K + K ++EL++A
Sbjct: 530 SWDQTKKAKLDAKSKKELRKA 550
Score = 37 (18.1 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 379 KDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLG 414
+ E +L D+ R+KKNK + + + +G
Sbjct: 572 QQFSQEDLDELASDIRLFKRLKKNKISEEDFDKAMG 607
>UNIPROTKB|H7C452 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0008026 HGNC:HGNC:2741 ChiTaRS:DDX18
EMBL:AC009312 EMBL:AC009404 ProteinModelPortal:H7C452 PRIDE:H7C452
Ensembl:ENST00000415038 Bgee:H7C452 Uniprot:H7C452
Length = 214
Score = 285 (105.4 bits), Expect = 5.7e-46, Sum P(2) = 5.7e-46
Identities = 56/125 (44%), Positives = 82/125 (65%)
Query: 133 KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDV 191
K++VF +SC VKY +E + +P++ ++G+ KQ++R + QFC S L CTDV
Sbjct: 91 KLMVFFSSCMSVKYHYELLNYI--DLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDV 148
Query: 192 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGRSVLFLTPTEMKMLEKLRE 250
A+RGLD + VDW+VQ D P+D YIHRVGRTAR N G ++L L P E+ L L++
Sbjct: 149 AARGLDIPE-VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQ 207
Query: 251 AKIPI 255
+K+P+
Sbjct: 208 SKVPL 212
Score = 225 (84.3 bits), Expect = 5.7e-46, Sum P(2) = 5.7e-46
Identities = 46/84 (54%), Positives = 60/84 (71%)
Query: 26 TPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85
TP F LQ L++DEADRILDVGF++ L I+ LP RQT LFSATQT+ V+DLAR+S
Sbjct: 2 TPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARIS 61
Query: 86 LK-DPQYLSVHEESVTATPNRLQQ 108
LK +P Y+ V ++ AT + L+Q
Sbjct: 62 LKKEPLYVGVDDDKANATVDGLEQ 85
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 134/420 (31%), Positives = 222/420 (52%)
Query: 1 MEKEHVNELNILVCTPGRLLQHMD-ETPNFDCS----QLQILILDEADRILDVGFKKALN 55
+EK NI++ TPGRL + D + L +L+LDEADR+LD+GF+ +LN
Sbjct: 127 VEKLKTQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLN 186
Query: 56 AIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTA 110
I+ LPK R+T LFSATQT+ ++ L R L++P ++V E+ V A TP +L
Sbjct: 187 TILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNYY 246
Query: 111 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQD 170
+ E+K + L +F++ H + K LVF ++C V+Y +A + L + + C++G+MK
Sbjct: 247 TMCRAEEKFNTLVAFLRQHKHEKQLVFFSTCACVEYFGKALEVLVKNVSIHCIHGKMKH- 305
Query: 171 RRMAIYAQF-CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS 229
+R I+A F K +L CTDV +RG+D + V+WV+Q D P +S++HR GRTAR +
Sbjct: 306 KRNKIFADFRALKSGILVCTDVMARGIDIPE-VNWVLQYDPPSSASSFVHRCGRTARIGN 364
Query: 230 GGRSVLFLTPTEMKMLEKLR-EAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQK 288
G +++FL P E + L K P+ + ++ K + V L A+ + M + +
Sbjct: 365 QGNALVFLLPMEESYVNFLSINQKCPLQ-SFSSVKDVVDVLPKLKAMALGDRAMFEKGMR 423
Query: 289 AFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLD-N 347
AF++Y+++ + +F + L + L PK+ L +GK P D
Sbjct: 424 AFVSYVQAYAKHECSLIFRIKDLDFAALARGFALLRLPKMPEL---RGKTFP-----DFK 475
Query: 348 AEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLED-VMRATRVKKNKKLK 406
AE D I R K D E+ + + E K+ E + + +++ ++KK++K K
Sbjct: 476 AEAIDTDTI-RFK---DKNREKQRQKWLAEQKEKEVPLRKNFIKNKAWSKQKIKKDRKKK 531
>TAIR|locus:2153564 [details] [associations]
symbol:AT5G05450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB010692 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AJ010469 IPI:IPI00516547
PIR:T51344 RefSeq:NP_196164.1 UniGene:At.23004
ProteinModelPortal:Q9FLB0 SMR:Q9FLB0 PaxDb:Q9FLB0 PRIDE:Q9FLB0
EnsemblPlants:AT5G05450.1 GeneID:830428 KEGG:ath:AT5G05450
GeneFarm:935 TAIR:At5g05450 InParanoid:Q9FLB0 OMA:MDSSANI
PhylomeDB:Q9FLB0 ProtClustDB:CLSN2679231 Genevestigator:Q9FLB0
GermOnline:AT5G05450 Uniprot:Q9FLB0
Length = 593
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 132/413 (31%), Positives = 212/413 (51%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
N+L+ TPGRL M+ D L+ILILDEADR+L++GF++ +N I+S+LPK R+T L
Sbjct: 144 NVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGL 203
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTA---------TPNRLQQTAMIVPLEQKLD 120
FSATQT+ V++LA+ L++P + V +S + TP+ L M ++K
Sbjct: 204 FSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKSS 263
Query: 121 MLWSFIKAHLNSKILVFLTSCKQVKY---VFEAFKKLRPGIPLMCLYGRMKQDRRMAIYA 177
L + + + K++VF +C V Y V L+ I L+ ++G MKQ+ R A
Sbjct: 264 QLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALK-SISLIPIHGDMKQNARDKALA 322
Query: 178 QFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 236
F + S L CTDVA+RGLD +D+VVQ D P+D + HR GRTAR GR+++F
Sbjct: 323 SFTKASSGALLCTDVAARGLDI-PGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVF 381
Query: 237 LTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRS 296
L P E +E +R ++P+ K + + V ++ + +K + + KAF++++R+
Sbjct: 382 LLPKEEAYVEFMRIRRVPLEERKCS-EDASDVIPIIRSAAMKDRAVMEKGLKAFVSFVRA 440
Query: 297 VHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGK---MVPVKPV-LDNAEKED 352
+F L I + + GL P + + Q + PV+ V + + +D
Sbjct: 441 YKEHHCSFIFRWKDLEIGKLAMGYGLLYLPSMSEVKQHRLSSEGFTPVEGVKFEEIKFKD 500
Query: 353 KLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKL 405
K REK N R E K +++GK ++ K ++KL
Sbjct: 501 KY---REKQRQQNLQVRKEKRQ--EEK--KEKGKRKRVDASASNDPKKASRKL 546
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 99/245 (40%), Positives = 149/245 (60%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
++++ TPGRL+ HM+ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+TFL
Sbjct: 199 HVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFL 258
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT TK VQ L R +L+DP SV S AT ++LQQ + +P + K L S +
Sbjct: 259 FSATMTKKVQKLQRAALQDPVKCSV--SSKYATVDKLQQFYIFIPSKYKDCYLVSILNEL 316
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFC 188
+ +VF +C + V + L GI + L+G+M Q++R+ +F K RSVL
Sbjct: 317 AGNSFMVFCGTCNNTQRVALLLRNL--GITAIPLHGQMSQNKRLGALNKFKSKSRSVLLA 374
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVASRGLD VD V+ D P YIHRVGRTAR G+S+ F+T ++++ +++
Sbjct: 375 TDVASRGLDIPH-VDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 433
Query: 249 REAKI 253
EA I
Sbjct: 434 -EALI 437
>TAIR|locus:2159527 [details] [associations]
symbol:STRS2 "STRESS RESPONSE SUPPRESSOR 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009414 "response
to water deprivation" evidence=IMP] [GO:0009651 "response to salt
stress" evidence=IMP] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009651 GO:GO:0009409 GO:GO:0009414 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010473 EMBL:AY035114
EMBL:AY142638 IPI:IPI00534387 PIR:T51348 RefSeq:NP_196479.1
UniGene:At.47465 ProteinModelPortal:Q94C75 SMR:Q94C75 STRING:Q94C75
PRIDE:Q94C75 EnsemblPlants:AT5G08620.1 GeneID:830763
KEGG:ath:AT5G08620 GeneFarm:945 TAIR:At5g08620 InParanoid:Q94C75
OMA:RELACQA PhylomeDB:Q94C75 ProtClustDB:CLSN2687472
Genevestigator:Q94C75 GermOnline:AT5G08620 Uniprot:Q94C75
Length = 563
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 113/344 (32%), Positives = 186/344 (54%)
Query: 11 ILVCTPGRLLQHMDETPNFDCSQL--QILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
ILV TPGRL H+D T F + ++L+LDEAD +LD+GF++ + I++ +PK RQTF
Sbjct: 211 ILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTF 270
Query: 69 LFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 127
LFSAT + V+ + ++LK D ++++ +E T ++ Q MI L++ +L+ +K
Sbjct: 271 LFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLK 330
Query: 128 AHLNS----KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR 183
H+ K+++F T+ + V + KL + + ++ R Q R + +F + +
Sbjct: 331 KHITDNVGYKVIIFCTTAMVTRLVADLLGKL--SLNVREIHSRKPQSYRTRVSDEFRKSK 388
Query: 184 SVLFCT-DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 242
S++ T DV++RG+D+ V VVQ+ P D YIHR+GRT R G VL L P E
Sbjct: 389 SIILVTSDVSARGVDYPD-VSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEE 447
Query: 243 KMLEKLREAKIPIHFTKANTKRL--QPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ 300
L +++ +PI TK++ + + V + L+ + A +A++ Y +S Q
Sbjct: 448 YFLSSVKD--LPI--TKSSLPPIDHEAVKKVQKGLIQVEMTNKEAAYQAWLGYYKS---Q 500
Query: 301 KDKEVFDVTKLS--IDEFSASLGLPMTPKI--RFLNQKKGKMVP 340
K K D T+L +EFS S+GL + P I L + K VP
Sbjct: 501 K-KIARDTTRLVELANEFSRSMGLSIPPAIPVNILGKMGLKNVP 543
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 93/245 (37%), Positives = 144/245 (58%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGRL+ H++ T F+ L+ LI+DEADRIL++ F+ L+ I+ +P+ R+T+L
Sbjct: 164 HIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYL 223
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT TK V L R SL+DP +SV S T + L+Q + VP + K L + H
Sbjct: 224 FSATMTKKVSKLERASLRDPARVSV--SSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEH 281
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFC 188
+ +VF +C + ++L G+ + L+G+M Q++R+ +F K R +L C
Sbjct: 282 AGNSAIVFCATCATTMQIAVMLRQL--GMQAVPLHGQMSQEKRLGSLNKFKSKAREILVC 339
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVA+RGLD VD V+ D P Y+HRVGRTAR G ++ +T +++ +K+
Sbjct: 340 TDVAARGLDIPH-VDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKI 398
Query: 249 REAKI 253
EA +
Sbjct: 399 -EANL 402
>POMBASE|SPBC24C6.02 [details] [associations]
symbol:SPBC24C6.02 "ATP-dependent RNA helicase Spb4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC24C6.02 GO:GO:0005524 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809
OMA:CACVEYW OrthoDB:EOG46MFT3 PIR:T39966 RefSeq:NP_595956.1
ProteinModelPortal:O74764 STRING:O74764 EnsemblFungi:SPBC24C6.02.1
GeneID:2540598 KEGG:spo:SPBC24C6.02 NextBio:20801723 Uniprot:O74764
Length = 606
Score = 395 (144.1 bits), Expect = 6.7e-39, Sum P(2) = 6.7e-39
Identities = 106/337 (31%), Positives = 182/337 (54%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
++++ TPGRL + + + L+ILILDEAD ++D+GF++ L +I+SQLPK R+T L
Sbjct: 134 SVVIGTPGRLNEMLS---HISSKHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGL 190
Query: 70 FSATQTKSVQDLARLS-LKDPQYLSVHEESV---TATPNRLQQTAMIVPLEQKLDMLWSF 125
FSAT +V +++ L++ +SV S T TP+ L ++++P K+ +
Sbjct: 191 FSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIPPIYKVQCMIHL 250
Query: 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF--CEKR 183
+ K +VF +SC V+Y F + ++ L+G+ Q R + +F K+
Sbjct: 251 LCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKK 310
Query: 184 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP-TEM 242
+VLF TD+ASRGLD VD+V+Q+D P D S+ HR GR R G +++ L E
Sbjct: 311 TVLFTTDIASRGLDIPN-VDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLNDGREE 369
Query: 243 KMLEKLREAKIPIHFTKANT-------KRLQPVSGLLAALLVKYPDMQHRAQKAFITYLR 295
+ E LR K+PI T+ +T RL+ ++ L ++ K D+ + +AF++++R
Sbjct: 370 EYEELLRVRKVPI--TRIDTPIEALDLSRLKVLTHELRKIVSKDRDLYDKGLRAFVSHVR 427
Query: 296 SVHIQKDKEVFDVTKLSIDEFS---ASLGLPMTPKIR 329
+ +F + L + + + A L LP P+++
Sbjct: 428 AYTKHHASFIFRIKDLDLGQLATAYALLHLPKMPELK 464
Score = 43 (20.2 bits), Expect = 6.7e-39, Sum P(2) = 6.7e-39
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 332 NQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLE 391
N ++ K K L A+K + +++++ +E + D++ D E + ++L E
Sbjct: 530 NTRREKRKSKKEFL-KAQKNEASNNLKQEIVSKAGAQETENDDLI---DEESDALSELEE 585
Query: 392 DVMRATRVKKNKKLK 406
D + +KK+KK K
Sbjct: 586 DYRQ---LKKSKKRK 597
>ASPGD|ASPL0000034540 [details] [associations]
symbol:spb4 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0030686 "90S preribosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000027 "ribosomal large
subunit assembly" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001306 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AACD01000052
HOGENOM:HOG000268803 KO:K14809 OMA:CACVEYW RefSeq:XP_660780.1
ProteinModelPortal:Q5B8F4 STRING:Q5B8F4
EnsemblFungi:CADANIAT00009893 GeneID:2873958 KEGG:ani:AN3176.2
OrthoDB:EOG46MFT3 Uniprot:Q5B8F4
Length = 638
Score = 401 (146.2 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 134/450 (29%), Positives = 213/450 (47%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQ--LQILILDEADRILDVGFKKALNAIVSQLPKHRQT 67
N+LV TPGRLL+ + +P+ C Q ++L+LDEADR+LD+GFK+ L I+ +LPK R+T
Sbjct: 166 NLLVATPGRLLELLS-SPHVYCPQSSFEMLVLDEADRLLDLGFKETLQNILRRLPKQRRT 224
Query: 68 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTAMIVPLEQKLDML 122
LFSA+ +++V + R+ L++P + V + + TP LQ T + P K L
Sbjct: 225 GLFSASVSEAVDQIVRVGLRNPVKVVVKVKGASGVDDKRTPASLQMTYLTQPPTGKFPAL 284
Query: 123 WSFIKA--HLNSKILVFLTSCKQVKYVFEAFKK-LRPGIPLMCLYGRMKQDRRMAIYAQF 179
+ + SK + F+++C V Y+ L L+ L+G+ + R + +F
Sbjct: 285 KHILNSVQPTPSKSIFFVSTCSGVDYLSVILPLILGNDFQLIPLHGKHPANVRQKNFNRF 344
Query: 180 CEKRS--VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 237
+ +L TDVASRGLD +VD VVQ+D P D ++IHR GR R G SV+ L
Sbjct: 345 VNAHNPAILLTTDVASRGLDI-PSVDLVVQIDPPSDPKTFIHRCGRAGRAGRRGLSVVLL 403
Query: 238 TP-TEMKMLEKLREAKIPI----H-FTKANTKRLQPVSGLLAALLVKYPDMQH-RAQKAF 290
P E + L K P+ H T ++ + A +VK H R QKAF
Sbjct: 404 HPGREEDYVSFLEVRKTPVAPFPHPITVSDAEAAAATE--TARKVVKADRAIHDRGQKAF 461
Query: 291 ITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKG-KMVPVKPVLDNAE 349
+++LRS + +F V L + + GL PK+ L KG K + V+ D
Sbjct: 462 VSWLRSYSKHQASSIFRVADLDWEGLGKAWGLLKLPKMPELKNFKGDKTLGVQMDWDTYA 521
Query: 350 KEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINV 409
+DK R L E + + + E ++ E+ R + K+ ++
Sbjct: 522 YKDKQREKRRLELLQEMAESGQQQTTNKKRPNETVAWSNNAEN--RNKKAKRRDMKQVRQ 579
Query: 410 HRPLGTRLVFDEECNTVPPLAMLADTKNAN 439
R ++ +E+ + ML + N
Sbjct: 580 ERKRWEKMTEEEKKKALETEQMLEQIRAKN 609
Score = 37 (18.1 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 510 ERGRRKKAKIYFDSDSDNDNDE 531
E+ R K+A D D++ DE
Sbjct: 611 EQRRLKRAAAKADKDAEEGGDE 632
>WB|WBGene00013983 [details] [associations]
symbol:ZK512.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0017038 "protein import" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000003 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:Z22177 eggNOG:COG0513 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809 PIR:B88549 PIR:S40763
RefSeq:NP_001254980.1 ProteinModelPortal:P34640 SMR:P34640
STRING:P34640 PaxDb:P34640 EnsemblMetazoa:ZK512.2a.1
EnsemblMetazoa:ZK512.2a.2 GeneID:176292 KEGG:cel:CELE_ZK512.2
UCSC:ZK512.2 CTD:176292 WormBase:ZK512.2
GeneTree:ENSGT00550000074969 InParanoid:P34640 OMA:HEKKVET
NextBio:891956 Uniprot:P34640
Length = 578
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 107/387 (27%), Positives = 198/387 (51%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQ---LQILILDEADRILDVGFKKALNAIVSQLPKHR 65
+NILV TPGRL Q + + LQ+L++DEADR ++ F+ + I+S +PK R
Sbjct: 132 VNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQR 191
Query: 66 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
+T LFSATQ K DL L++ + + V +E +A P+ L+ + ++K + F
Sbjct: 192 RTGLFSATQVKEEDDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEF 251
Query: 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 184
I+ + KIL+F SC V+Y ++ F++ PL ++G+ R + F + +
Sbjct: 252 IRQRTDKKILIFFPSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQIKAFSDSTNG 311
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244
V+ TDV +RG+D + +DWV+Q D P+ + ++HR GRTAR G +++ + ++
Sbjct: 312 VMISTDVMARGIDISD-IDWVIQFDLPKHSSWFVHRAGRTARCGREGNALILIASEQLAY 370
Query: 245 LE--------KLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRS 296
+ KL E K+P + N+++ + + + + V + +AF++++ S
Sbjct: 371 VNFLDNHEKVKLDEIKVPTN----NSRKSEELRQKMIKIQVSDRAILEAGTRAFVSHVES 426
Query: 297 VHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAE---KEDK 353
+ + L++ + S L PK+R L+Q+K + + ++ +E + K
Sbjct: 427 YAKHDCHLICSLDDLNVVGLANSYALLRLPKMRELSQRKDLDMFDRSAIETSEIKYADVK 486
Query: 354 LMISREKLLPDNFTEENVDRDILETKD 380
L +RE ++ + E+ V+ L KD
Sbjct: 487 LEANRETVMKEKH-EKKVET--LAAKD 510
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 89/240 (37%), Positives = 142/240 (59%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I++ TPGRL+ H++ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+TFL
Sbjct: 145 HIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFL 204
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT TK VQ L R +LK+P +V S T +LQQ + +P + K L +
Sbjct: 205 FSATMTKQVQKLQRAALKNPVKCAV--SSKYQTVEKLQQYYIFIPSKFKDSYLVYILNEL 262
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFC 188
+ ++F ++C + + L G + L+G+M Q++R+ +F K RS+L
Sbjct: 263 AGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQNKRLGSLNKFKAKARSILLA 320
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVASRGLD VD V+ D P YIHRVGRTAR G+S+ F+T ++++ +++
Sbjct: 321 TDVASRGLDIPH-VDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 379
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 92/254 (36%), Positives = 147/254 (57%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I++ TPGRL+ H++ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+TFL
Sbjct: 146 HIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFL 205
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT TK VQ L R +LK+P +V S T +LQQ + +P + K L +
Sbjct: 206 FSATMTKKVQKLQRAALKNPVKCAV--SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 263
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFC 188
+ ++F ++C + + L G + L+G+M Q +R+ +F K RS+L
Sbjct: 264 AGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQSKRLGSLNKFKAKARSILLA 321
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVASRGLD VD VV D P YIHRVGRTAR G+++ F+T ++++ +++
Sbjct: 322 TDVASRGLDIPH-VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 380
Query: 249 REA---KIPIHFTK 259
K+P+ T+
Sbjct: 381 EHLIGKKLPVFPTQ 394
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 92/254 (36%), Positives = 147/254 (57%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I++ TPGRL+ H++ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+TFL
Sbjct: 170 HIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFL 229
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT TK VQ L R +LK+P +V S T +LQQ + +P + K L +
Sbjct: 230 FSATMTKKVQKLQRAALKNPVKCAV--SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 287
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFC 188
+ ++F ++C + + L G + L+G+M Q +R+ +F K RS+L
Sbjct: 288 AGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQSKRLGSLNKFKAKARSILLA 345
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVASRGLD VD VV D P YIHRVGRTAR G+++ F+T ++++ +++
Sbjct: 346 TDVASRGLDIPH-VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 404
Query: 249 REA---KIPIHFTK 259
K+P+ T+
Sbjct: 405 EHLIGKKLPVFPTQ 418
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 92/254 (36%), Positives = 147/254 (57%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I++ TPGRL+ H++ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+TFL
Sbjct: 144 HIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFL 203
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT TK VQ L R +LK+P +V S T +LQQ + +P + K L +
Sbjct: 204 FSATMTKKVQKLQRAALKNPVKCAV--SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFC 188
+ ++F ++C + + L G + L+G+M Q +R+ +F K RS+L
Sbjct: 262 AGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQSKRLGSLNKFKAKARSILLA 319
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVASRGLD VD VV D P YIHRVGRTAR G+++ F+T ++++ +++
Sbjct: 320 TDVASRGLDIPH-VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
Query: 249 REA---KIPIHFTK 259
K+P+ T+
Sbjct: 379 EHLIGKKLPVFPTQ 392
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 92/254 (36%), Positives = 147/254 (57%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I++ TPGRL+ H++ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+TFL
Sbjct: 144 HIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFL 203
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT TK VQ L R +LK+P +V S T +LQQ + +P + K L +
Sbjct: 204 FSATMTKKVQKLQRAALKNPVKCAV--SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFC 188
+ ++F ++C + + L G + L+G+M Q +R+ +F K RS+L
Sbjct: 262 AGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQSKRLGSLNKFKAKARSILLA 319
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVASRGLD VD VV D P YIHRVGRTAR G+++ F+T ++++ +++
Sbjct: 320 TDVASRGLDIPH-VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
Query: 249 REA---KIPIHFTK 259
K+P+ T+
Sbjct: 379 EHLIGKKLPVFPTQ 392
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 385 (140.6 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 91/250 (36%), Positives = 142/250 (56%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+++V TPGRL HM +T F L+ L+LDEADR+L+ F+K+LN I+ ++P R+TFL
Sbjct: 141 HVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFL 200
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT TK V+ L R L++P + + S +T + L+Q V + K D +I +
Sbjct: 201 FSATMTKKVRKLQRACLRNP--VKIEAASKYSTVDTLKQQYRFVAAKYK-DCYLVYILSE 257
Query: 130 L-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVLF 187
+ S ++F +C +++ + L G + + G+M Q +R+ +F + ++L
Sbjct: 258 MPESTSMIFTRTCDGTRFLALVLRSL--GFRAIPISGQMTQSKRLGALNKFKAGECNILV 315
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK---M 244
CTDVASRGLD +VD V+ D P + YIHRVGRTAR G + + E++
Sbjct: 316 CTDVASRGLDI-PSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQ 374
Query: 245 LEKLREAKIP 254
+EKL K+P
Sbjct: 375 IEKLIGKKLP 384
Score = 37 (18.1 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 515 KKAKIYFDSDSDNDNDERKQNKD 537
++++ + + D N ER NKD
Sbjct: 425 EESERFLGGNKDRGNKERGGNKD 447
>UNIPROTKB|F5H5U2 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AC055713 EMBL:AC117503
HGNC:HGNC:20085 ChiTaRS:DDX55 IPI:IPI01010332
ProteinModelPortal:F5H5U2 SMR:F5H5U2 Ensembl:ENST00000538744
ArrayExpress:F5H5U2 Bgee:F5H5U2 Uniprot:F5H5U2
Length = 569
Score = 326 (119.8 bits), Expect = 8.6e-38, Sum P(2) = 8.6e-38
Identities = 74/185 (40%), Positives = 116/185 (62%)
Query: 10 NILVCTPGRLLQHMD-ETPNFD---CSQ-LQILILDEADRILDVGFKKALNAIVSQLPKH 64
NI+V TPGRL + D C + L +L+LDEADR+LD+GF+ ++N I+ LPK
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195
Query: 65 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA-----TPNRLQQTAMIVPLEQKL 119
R+T LFSATQT+ V++L R L++P +SV E+ V A TP+RL+ M+ ++K
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKF 255
Query: 120 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
+ L F++ H K LVF ++C V+Y +A + L G+ +MC++G+MK +R I+ +F
Sbjct: 256 NQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKMKY-KRNKIFMEF 314
Query: 180 CEKRS 184
+ +S
Sbjct: 315 RKLQS 319
Score = 141 (54.7 bits), Expect = 8.6e-38, Sum P(2) = 8.6e-38
Identities = 54/203 (26%), Positives = 90/203 (44%)
Query: 215 ASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLR-EAKIPIHFTKA--NTKRLQPVSGL 271
++++HR GRTAR GG +++FL P E + L K P+ K NT L P
Sbjct: 319 SAFVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQKCPLQEMKPQRNTADLLPK--- 375
Query: 272 LAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFL 331
L ++ + + + KAF++Y+++ + +F + L + L PK+ L
Sbjct: 376 LKSMALADRAVFEKGMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPEL 435
Query: 332 NQKK-GKMVPVKPVLDNAEKEDKLMIS-REKLLPDNFTEENVDRDILETKDIEDEGKADL 389
K+ VPV D +DK+ R+KLL E+ E+EG+
Sbjct: 436 RGKQFPDFVPVDVNTDTIPFKDKIREKQRQKLLEQQRREKT-----------ENEGRRKF 484
Query: 390 LED-VMRATRVKKNKKLKINVHR 411
+++ + KK KK K+N R
Sbjct: 485 IKNKAWSKQKAKKEKKKKMNEKR 507
Score = 62 (26.9 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 357 SREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNK 403
S++K + + N R E DIEDE +LL D ++KK K
Sbjct: 491 SKQKAKKEKKKKMNEKRKREEGSDIEDEDMEELLNDTRLLKKLKKGK 537
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 88/240 (36%), Positives = 143/240 (59%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I++ TPGRL+ H++ F+ ++ L++DEADRIL++ F+ L+ I+ LP+ R+TFL
Sbjct: 181 HIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFL 240
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT TK V+ L R SLKDP + V + T +LQQ+ + +P++ K L +
Sbjct: 241 FSATMTKKVKKLQRASLKDPVKVEVSNKYQTV--EQLQQSYLFIPVKYKDVYLVHILNEL 298
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFC 188
+ ++F ++C + L G+ + L+G+M Q++R+A +F K RS+L
Sbjct: 299 AGNSFMIFCSTCNNTVKTALMLRAL--GLAAIPLHGQMSQNKRLAALNKFKAKNRSILIS 356
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVASRGLD VD VV D P YIHRVGRTAR G+++ ++ ++++ +++
Sbjct: 357 TDVASRGLDIPH-VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 415
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 89/240 (37%), Positives = 141/240 (58%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I++ TPGRL+ H++ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+TFL
Sbjct: 144 HIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFL 203
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT TK VQ L R +LK+P +V S T +LQQ + +P + K L +
Sbjct: 204 FSATMTKKVQKLQRAALKNPVKCAV--SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFC 188
+ ++F ++C + + L G + L+G+M Q +R+ +F K RS+L
Sbjct: 262 AGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQSKRLGSLNKFKAKARSILLA 319
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVASRGLD VD VV D P YIHRVGRTAR G+++ F+T ++++ +++
Sbjct: 320 TDVASRGLDIPH-VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 374 (136.7 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 86/218 (39%), Positives = 127/218 (58%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I++ TPGRL+ H++ T F+ L+ L++DEADRIL++ F+ ++ I+ +P+ R+TFL
Sbjct: 143 HIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFL 202
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT TK VQ L R +LK+P +V S T +LQQ + +P + K L +
Sbjct: 203 FSATMTKKVQKLQRAALKNPVKCAV--SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 260
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFC 188
+ ++F ++C + + L G + L+G+M Q +R+ +F K RS+L
Sbjct: 261 AGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQSKRLGSLNKFKAKARSILLA 318
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR 226
TDVASRGLD VD VV D P YIHRVGRTAR
Sbjct: 319 TDVASRGLDIPH-VDVVVNFDIPTHSKDYIHRVGRTAR 355
Score = 37 (18.1 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 5/16 (31%), Positives = 13/16 (81%)
Query: 530 DERKQNKDDNGPNIDS 545
+++K++++D G N D+
Sbjct: 420 EKKKRSREDTGDNDDT 435
>TAIR|locus:2159517 [details] [associations]
symbol:PDE340 "PIGMENT DEFECTIVE 340" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010474
IPI:IPI00522710 PIR:T51747 RefSeq:NP_196478.2 UniGene:At.32551
ProteinModelPortal:Q9FNM7 SMR:Q9FNM7 STRING:Q9FNM7 PaxDb:Q9FNM7
PRIDE:Q9FNM7 EnsemblPlants:AT5G08610.1 GeneID:830762
KEGG:ath:AT5G08610 GeneFarm:949 TAIR:At5g08610 InParanoid:Q9FNM7
OMA:GRNDRNV PhylomeDB:Q9FNM7 ProtClustDB:CLSN2918084
Genevestigator:Q9FNM7 GermOnline:AT5G08610 Uniprot:Q9FNM7
Length = 850
Score = 400 (145.9 bits), Expect = 2.8e-36, P = 2.8e-36
Identities = 110/348 (31%), Positives = 188/348 (54%)
Query: 7 NELNILVCTPGRLLQHMDETPNFDCSQL--QILILDEADRILDVGFKKALNAIVSQLPKH 64
N ILV TPGRL H++ T F + ++L+LDEAD +LD+GF++ + I++ +PK
Sbjct: 509 NPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQ 568
Query: 65 RQTFLFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 123
RQTFLFSAT + V+ + ++LK D ++++ +E T ++ Q MI L++ +L
Sbjct: 569 RQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLH 628
Query: 124 SFIKAHL----NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
+K H+ + K+++F T+ + V + +L + + ++ R Q R + +F
Sbjct: 629 VLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQL--SLNVREIHSRKPQSYRTRVSDEF 686
Query: 180 CEKRSVLFCT-DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
+ ++++ T DV++RG+D+ V VVQ+ P D YIHR+GRT R G VL L
Sbjct: 687 RKSKAIILVTSDVSARGVDYPD-VSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLA 745
Query: 239 PTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHR--AQKAFITYLRS 296
P E + +++ +PI TK+ + P + + +M+++ A +A++ Y +S
Sbjct: 746 PWEEYFMSSVKD--LPI--TKSPLPPIDPEAVKRVQKGLSQVEMKNKEAAYQAWLGYYKS 801
Query: 297 VHIQKDKEVFDVTKLS--IDEFSASLGLPMTPKI-RFLNQKKG-KMVP 340
QK D T+L +EFS S+GL P I + + K G K VP
Sbjct: 802 ---QK-MIARDTTRLVELANEFSRSMGLDSPPAIPKNVLGKMGLKNVP 845
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 369 (135.0 bits), Expect = 9.9e-36, Sum P(3) = 9.9e-36
Identities = 86/231 (37%), Positives = 136/231 (58%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH-RQTF 68
+I++ TPGRL+ H+ +P+F +Q+L++DEADR+L+ GF+ L I+S +PKH RQT
Sbjct: 252 DIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTL 311
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSFIK 127
LFSAT +QDL +LSL+ P + + A+ LQQ I +Q K +L+ +K
Sbjct: 312 LFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVAS-KLLQQFVRIRKRDQLKPALLYQLLK 370
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVL 186
++S+++VF+ K+ + L G+ + L+G + Q++R+ F VL
Sbjct: 371 G-VSSRVVVFVAR-KETAHRLRIVLGLL-GLKVSELHGALTQEQRLQNVKNFKSLEVPVL 427
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 237
CTD+A+RGLD K ++ V+ D P+ Y+HRVGRTAR G S+ F+
Sbjct: 428 ICTDLAARGLDIPK-IELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFV 477
Score = 46 (21.3 bits), Expect = 9.9e-36, Sum P(3) = 9.9e-36
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 348 AEKEDKLMISREKLLPDNFTEENVDRDILETK 379
AE+ +KL+ S+E ++ + EE +++L +
Sbjct: 506 AEETNKLLESKESVIDEVLEEEKEAKELLRAE 537
Score = 40 (19.1 bits), Expect = 9.9e-36, Sum P(3) = 9.9e-36
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 5 HVNELNILVCTPGRLLQHMDE 25
HVN LNI + G L+ +E
Sbjct: 225 HVNNLNIGLAVGGLNLRQQEE 245
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 369 (135.0 bits), Expect = 9.9e-36, Sum P(3) = 9.9e-36
Identities = 86/231 (37%), Positives = 136/231 (58%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH-RQTF 68
+I++ TPGRL+ H+ +P+F +Q+L++DEADR+L+ GF+ L I+S +PKH RQT
Sbjct: 252 DIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTL 311
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSFIK 127
LFSAT +QDL +LSL+ P + + A+ LQQ I +Q K +L+ +K
Sbjct: 312 LFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVAS-KLLQQFVRIRKRDQLKPALLYQLLK 370
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVL 186
++S+++VF+ K+ + L G+ + L+G + Q++R+ F VL
Sbjct: 371 G-VSSRVVVFVAR-KETAHRLRIVLGLL-GLKVSELHGALTQEQRLQNVKNFKSLEVPVL 427
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 237
CTD+A+RGLD K ++ V+ D P+ Y+HRVGRTAR G S+ F+
Sbjct: 428 ICTDLAARGLDIPK-IELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFV 477
Score = 46 (21.3 bits), Expect = 9.9e-36, Sum P(3) = 9.9e-36
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 348 AEKEDKLMISREKLLPDNFTEENVDRDILETK 379
AE+ +KL+ S+E ++ + EE +++L +
Sbjct: 506 AEETNKLLESKESVIDEVLEEEKEAKELLRAE 537
Score = 40 (19.1 bits), Expect = 9.9e-36, Sum P(3) = 9.9e-36
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 5 HVNELNILVCTPGRLLQHMDE 25
HVN LNI + G L+ +E
Sbjct: 225 HVNNLNIGLAVGGLNLRQQEE 245
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 391 (142.7 bits), Expect = 2.0e-35, P = 2.0e-35
Identities = 129/430 (30%), Positives = 219/430 (50%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
++L+ TPGRL+ H+ TP+F+ SQ++ILILDEADR+LD F++ + I+ RQT L
Sbjct: 324 DVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQTML 383
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIK 127
FSAT ++ V+DLA +SLK P + V+ + A P Q+ I P ++ + ++ + +
Sbjct: 384 FSATMSEEVKDLASVSLKQPVRIFVNSNTDVA-PYLRQEFVRIRPNKEGDREAIVAALLT 442
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVL 186
+++F + KQ + + G+ + L+G + Q +R+ +F +++ +L
Sbjct: 443 RTFQDHVMLFTQTKKQAHRMHILLGLM--GLKVGELHGNLSQTQRLESLRRFKDEQIDIL 500
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVA+RGLD + V V+ P V Y+HRVGRTAR GRSV + TE KML+
Sbjct: 501 VATDVAARGLDI-EGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKMLK 559
Query: 247 KL-REAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEV 305
++ ++AK P+ KA R+ P +++K+ D+ + +K L +K+
Sbjct: 560 EIVKKAKFPV---KA---RVIPQE-----VILKFRDLIEKLEKDVYAVLCLEKEEKEMAH 608
Query: 306 FDVTKLSIDE-FSASLGLPMTPKIRF-LNQ--KKGKMVPVKPVLDNA--EKEDKLMISRE 359
+ S + + S P+ F N+ KK +M D A K+ + ++
Sbjct: 609 SEAQISSAQKRLTKSEDEKQLPRTWFQTNEERKKDRMAKALQDFDLALRGKKKRAQFLKQ 668
Query: 360 KLLPDNFTEENVDRDILETKDI-EDEGKADLLEDVMRAT-RVKKNKK-LKINVHRPLGTR 416
+ EE ++L+++ E K + + RA + +KK LK N + G +
Sbjct: 669 GKRKELTAEERAQLEVLKSQMFAERAAKRERKQKRARAIPEDQPDKKALKKNAGKA-GKK 727
Query: 417 LVFDEEC-NT 425
VFD+E NT
Sbjct: 728 SVFDKELTNT 737
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 90/249 (36%), Positives = 140/249 (56%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGRLL H++ T F L+ L +DEADR+LD+ F ++L+ I+ LP+ R T+L
Sbjct: 166 HIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYL 225
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT + V+ L R SL +P +SV S T + LQ + + +P + K L +
Sbjct: 226 FSATMSTKVESLQRASLSNPVRVSV--SSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEF 283
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFC 188
++F T+ + + V AF G + L+G++ Q R+ +F + R +L
Sbjct: 284 AGQSAIIFTTTVHETQRV--AFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVA 341
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVA+RGLD +VD V D P D +YIHRVGRTAR G ++ F+T ++++ ++
Sbjct: 342 TDVAARGLDI-PSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRI 400
Query: 249 REA---KIP 254
A K+P
Sbjct: 401 EHALSKKLP 409
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 88/245 (35%), Positives = 134/245 (54%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
++LVCTPGRL+ H++ T F L+ LI+DEADR+LD+ F ++ I+ +P R+T L
Sbjct: 166 HVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLL 225
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT T V+ L R SL P ++V S +T + L Q + P + K L +
Sbjct: 226 FSATMTSKVEKLQRASLHQPVRVAV--SSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNEL 283
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 188
+ I++F + + + + L G + L+G++ Q R+ +F RS L
Sbjct: 284 AGNSIIIFARTVNDTQRLAILLRTL--GFSAIPLHGQLSQSNRLGALNKFKSGARSTLVA 341
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVA+RGLD VD V+ D P D +YIHRVGRTAR G+S+ +T +++ ++
Sbjct: 342 TDVAARGLDI-PLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRI 400
Query: 249 REAKI 253
EA I
Sbjct: 401 -EATI 404
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 376 (137.4 bits), Expect = 7.9e-34, P = 7.9e-34
Identities = 119/404 (29%), Positives = 201/404 (49%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+IL+ TPGRL+ H+ P+F S +++LILDEADR+LD F++ + I+ +HRQT L
Sbjct: 303 DILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQTML 362
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIK 127
FSAT T+ V+DLA +SLK+P + V+ + A P Q+ I P + + ++ + +
Sbjct: 363 FSATMTEEVKDLASVSLKNPTRIFVNSNTDVA-PFLRQEFIRIRPNREGDREAIVSALLT 421
Query: 128 AHLNSKILVFLTSCKQVK--YVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-S 184
+++F + KQ ++ LR G L+G + Q +R+ +F +++
Sbjct: 422 RTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGE----LHGNLSQAQRLEALRRFKDEQID 477
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244
+L TDVA+RGLD + V V+ P Y+HRVGRTAR GRSV + E KM
Sbjct: 478 ILVATDVAARGLDI-EGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKM 536
Query: 245 LEKL-REAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDK 303
L+++ + AK P+ KA R+ P +L K +++ +Q+ +
Sbjct: 537 LKEIVKAAKTPV---KA---RILPQDVILK-FREKIENLEKDVYAVLCLEREEREMQQSE 589
Query: 304 EVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISREKLLP 363
+ K ++E + F +++ K K L A +E L + R K
Sbjct: 590 AQINKAKKQLEEGKQEAATKGVERSWFQTREERK----KEKLAKALQEFDLAL-RGKKKR 644
Query: 364 DNFTEENVDRDILETKDIEDEGKADLLEDVMRATRV-KKNKKLK 406
F ++ R T E+ + ++L+ M A R+ K+N+++K
Sbjct: 645 KKFMQDT-QRKAQMTP--EERSQFEILKSQMYAERLAKRNRRVK 685
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 376 (137.4 bits), Expect = 7.9e-34, P = 7.9e-34
Identities = 119/404 (29%), Positives = 201/404 (49%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+IL+ TPGRL+ H+ P+F S +++LILDEADR+LD F++ + I+ +HRQT L
Sbjct: 304 DILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQTML 363
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIK 127
FSAT T+ V+DLA +SLK+P + V+ + A P Q+ I P + + ++ + +
Sbjct: 364 FSATMTEEVKDLASVSLKNPTRIFVNSNTDVA-PFLRQEFIRIRPNREGDREAIVSALLT 422
Query: 128 AHLNSKILVFLTSCKQVK--YVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-S 184
+++F + KQ ++ LR G L+G + Q +R+ +F +++
Sbjct: 423 RTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGE----LHGNLSQAQRLEALRRFKDEQID 478
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244
+L TDVA+RGLD + V V+ P Y+HRVGRTAR GRSV + E KM
Sbjct: 479 ILVATDVAARGLDI-EGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKM 537
Query: 245 LEKL-REAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDK 303
L+++ + AK P+ KA R+ P +L K +++ +Q+ +
Sbjct: 538 LKEIVKAAKTPV---KA---RILPQDVILK-FREKIENLEKDVYAVLCLEREEREMQQSE 590
Query: 304 EVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISREKLLP 363
+ K ++E + F +++ K K L A +E L + R K
Sbjct: 591 AQINKAKKQLEEGKQEAATKGVERSWFQTREERK----KEKLAKALQEFDLAL-RGKKKR 645
Query: 364 DNFTEENVDRDILETKDIEDEGKADLLEDVMRATRV-KKNKKLK 406
F ++ R T E+ + ++L+ M A R+ K+N+++K
Sbjct: 646 KKFMQDT-QRKAQMTP--EERSQFEILKSQMYAERLAKRNRRVK 686
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 351 (128.6 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
Identities = 83/260 (31%), Positives = 140/260 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGR+L H+ E +L+ L++DEAD +L++GF + AI+ +LP R T L
Sbjct: 124 HIVVGTPGRVLDHI-EKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT + V+ L+R + P ++ + +T ++++ T V E+KL +L
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITT--DKIEHTLFEVREEEKLSLLKDVTTIE 240
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 188
++F + + V +V+ ++ P ++G M Q+ R + F + K L
Sbjct: 241 NPDSCIIFCRTQENVDHVYRQLDRVN--YPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVA 298
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVA+RG+D + + V+ D P + SY+HR GRT R + G+++ F+TP E + LE++
Sbjct: 299 TDVAARGIDIDN-ITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357
Query: 249 REAKIPIHFTKANTKRLQPV 268
EA I KAN + V
Sbjct: 358 -EAYIGFAIPKANAPSKEEV 376
Score = 45 (20.9 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 385 GKADLLEDVMRATRVKKNKKLKIN 408
GK L+ VMR T +K K+LK++
Sbjct: 455 GKGPLVLKVMRNTTIK-GKQLKVH 477
Score = 41 (19.5 bits), Expect = 2.7e-33, Sum P(2) = 2.7e-33
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 384 EGKADLLEDVMRATRVKKNKKLKIN 408
+GKA E + +KK+K IN
Sbjct: 378 KGKAAFEEKIQAKPTIKKDKSADIN 402
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 351 (128.6 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
Identities = 83/260 (31%), Positives = 140/260 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGR+L H+ E +L+ L++DEAD +L++GF + AI+ +LP R T L
Sbjct: 124 HIVVGTPGRVLDHI-EKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT + V+ L+R + P ++ + +T ++++ T V E+KL +L
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITT--DKIEHTLFEVREEEKLSLLKDVTTIE 240
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 188
++F + + V +V+ ++ P ++G M Q+ R + F + K L
Sbjct: 241 NPDSCIIFCRTQENVDHVYRQLDRVN--YPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVA 298
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVA+RG+D + + V+ D P + SY+HR GRT R + G+++ F+TP E + LE++
Sbjct: 299 TDVAARGIDIDN-ITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357
Query: 249 REAKIPIHFTKANTKRLQPV 268
EA I KAN + V
Sbjct: 358 -EAYIGFAIPKANAPSKEEV 376
Score = 45 (20.9 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 385 GKADLLEDVMRATRVKKNKKLKIN 408
GK L+ VMR T +K K+LK++
Sbjct: 455 GKGPLVLKVMRNTTIK-GKQLKVH 477
Score = 41 (19.5 bits), Expect = 2.7e-33, Sum P(2) = 2.7e-33
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 384 EGKADLLEDVMRATRVKKNKKLKIN 408
+GKA E + +KK+K IN
Sbjct: 378 KGKAAFEEKIQAKPTIKKDKSADIN 402
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 370 (135.3 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
Identities = 88/250 (35%), Positives = 142/250 (56%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+IL+ TPGRL+ H+ P+F S +++LILDEADR+LD F++ + I+ HRQT L
Sbjct: 341 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 400
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIK 127
FSAT T V+DLA +SLK+P + V+ + A P Q+ I P + + ++ + +
Sbjct: 401 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVA-PFLRQEFIRIRPNREGDREAIVAALLT 459
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVL 186
+++F + KQ + + G+ + L+G + Q +R+ +F +++ +L
Sbjct: 460 RTFTDHVMLFTQTKKQAHRMHILLGLM--GLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVA+RGLD + V V+ P + Y+HRVGRTAR GRSV + E KML+
Sbjct: 518 VATDVAARGLDI-EGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLK 576
Query: 247 KL-REAKIPI 255
++ + AK P+
Sbjct: 577 EIVKAAKAPV 586
Score = 41 (19.5 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
Identities = 16/82 (19%), Positives = 39/82 (47%)
Query: 335 KGKMVPVKPVL---DNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLE 391
K +++P +L D EK +K + + +L + + + I K + ++GK +++
Sbjct: 587 KARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQ 646
Query: 392 DVMRATRVKKNKKLKINVHRPL 413
+ R+ K ++ K + + L
Sbjct: 647 EPERSWFQTKEERKKEKIAKAL 668
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 369 (135.0 bits), Expect = 6.6e-33, P = 6.6e-33
Identities = 86/249 (34%), Positives = 141/249 (56%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+++V TPGR++ H++ T F L+ L++DEADR+LD+ F AL+ I+ +P R T+L
Sbjct: 243 HVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYL 302
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT T ++ L R SL +P ++V + TA + L Q+ M+V K +L +
Sbjct: 303 FSATMTNKIEKLQRASLHNPVRVAVSSKYQTA--DNLVQSMMLVNDGYKNTILIHLLNEF 360
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVLFC 188
+ I+VF + + + L G + L+G++ Q +R+ +F + ++L
Sbjct: 361 MGKSIIVFTRTVAHAQRTALLARIL--GFNAVPLHGQLSQSQRLGSLNKFKSNQANILVA 418
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM---L 245
TDVA+RGLD +VD V+ D P D +YIHRVGRTAR G+S+ +T +++M +
Sbjct: 419 TDVAARGLDI-PSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 477
Query: 246 EKLREAKIP 254
E + K+P
Sbjct: 478 ESVLGKKLP 486
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 373 (136.4 bits), Expect = 8.4e-33, P = 8.4e-33
Identities = 90/250 (36%), Positives = 142/250 (56%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+IL+ TPGRL+ H+ P+F S +++LILDEADR+LD F++ + I+ HRQT L
Sbjct: 307 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 366
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIK 127
FSAT T V+DLA +SLK+P + V+ + A P Q+ I P + + ++ + +
Sbjct: 367 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVA-PFLRQEFIRIRPNREGDREAIVAALLM 425
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVL 186
+++F + KQ + L G+ + L+G + Q +R+ +F +++ +L
Sbjct: 426 RTFTDHVMLFTQTKKQAHRMHILLGLL--GLQVGELHGNLSQTQRLEALRRFKDEQIDIL 483
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVA+RGLD + V V+ P V Y+HRVGRTAR GRSV + E KML+
Sbjct: 484 VATDVAARGLDI-EGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 542
Query: 247 KL-REAKIPI 255
++ + AK P+
Sbjct: 543 EIVKAAKAPV 552
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 363 (132.8 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 88/250 (35%), Positives = 138/250 (55%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-KHRQTF 68
+I++ TPGRL+ H++ T F +L+ L++DEADR+LD+ F L+ I+ +P + R T+
Sbjct: 201 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 260
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT T + L R SL +P +V + T + L QT M+VP K L +
Sbjct: 261 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTV--DTLVQTLMVVPGGLKNTYLIYLLNE 318
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVLF 187
+ +++F + + + L L+G + Q++RM F KRS+L
Sbjct: 319 FIGKTMIIFTRTKANAERLSGLCNLLE--FSATALHGDLNQNQRMGSLDLFKAGKRSILV 376
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEK 247
TDVA+RGLD +VD VV D P D SYIHRVGRTAR G+S+ ++ +++++ +
Sbjct: 377 ATDVAARGLDI-PSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 435
Query: 248 LREA---KIP 254
+ E K+P
Sbjct: 436 IEEVLGKKLP 445
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 371 (135.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 88/250 (35%), Positives = 142/250 (56%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+IL+ TPGRL+ H+ P+F S +++LILDEADR+LD F++ + I+ HRQT L
Sbjct: 310 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 369
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIK 127
FSAT T V+DLA +SLK+P + V+ + A P Q+ I P + + ++ + +
Sbjct: 370 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVA-PFLRQEFVRIRPNREGDREAIVAALLT 428
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVL 186
+++F + KQ + + G+ + L+G + Q +R+ +F +++ +L
Sbjct: 429 RTFTDHVMLFTQTKKQAHRMHILLGLM--GLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVA+RGLD + V V+ P + Y+HRVGRTAR GRSV + E KML+
Sbjct: 487 VATDVAARGLDI-EGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 545
Query: 247 KL-REAKIPI 255
++ + AK P+
Sbjct: 546 EIVKAAKAPV 555
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 371 (135.7 bits), Expect = 2.4e-32, P = 2.4e-32
Identities = 88/250 (35%), Positives = 142/250 (56%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+IL+ TPGRL+ H+ P+F S +++LILDEADR+LD F++ + I+ HRQT L
Sbjct: 331 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 390
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIK 127
FSAT T V+DLA +SLK+P + V+ + A P Q+ I P + + ++ + +
Sbjct: 391 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVA-PFLRQEFVRIRPNREGDREAIVAALLT 449
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVL 186
+++F + KQ + + G+ + L+G + Q +R+ +F +++ +L
Sbjct: 450 RTFTDHVMLFTQTKKQAHRMHILLGLM--GLQVGELHGNLSQTQRLEALRRFKDEQIDIL 507
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVA+RGLD + V V+ P + Y+HRVGRTAR GRSV + E KML+
Sbjct: 508 VATDVAARGLDI-EGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 566
Query: 247 KL-REAKIPI 255
++ + AK P+
Sbjct: 567 EIVKAAKAPV 576
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 370 (135.3 bits), Expect = 3.2e-32, P = 3.2e-32
Identities = 88/250 (35%), Positives = 142/250 (56%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+IL+ TPGRL+ H+ P+F S +++LILDEADR+LD F++ + I+ HRQT L
Sbjct: 310 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 369
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIK 127
FSAT T V+DLA +SLK+P + V+ + A P Q+ I P + + ++ + +
Sbjct: 370 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVA-PFLRQEFIRIRPNREGDREAIVAALLM 428
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVL 186
+++F + KQ + + G+ + L+G + Q +R+ +F +++ +L
Sbjct: 429 RTFTDHVMLFTQTKKQAHRMHILLGLM--GLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVA+RGLD + V V+ P + Y+HRVGRTAR GRSV + E KML+
Sbjct: 487 VATDVAARGLDI-EGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 545
Query: 247 KL-REAKIPI 255
++ + AK P+
Sbjct: 546 EIVKAAKAPV 555
>UNIPROTKB|F1SV16 [details] [associations]
symbol:F1SV16 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074980 EMBL:CU930036
Ensembl:ENSSSCT00000016375 OMA:SAREVPM Uniprot:F1SV16
Length = 301
Score = 350 (128.3 bits), Expect = 6.5e-32, P = 6.5e-32
Identities = 67/97 (69%), Positives = 81/97 (83%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E E +N +NILVCTPGRLLQHMDET F + LQ+L+LDEADRILD+GF +NAI+ L
Sbjct: 184 EAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 243
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEES 98
PK RQT LFSATQTKSV+DLARLSLK+P+Y+ VHE++
Sbjct: 244 PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKA 280
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 362 (132.5 bits), Expect = 6.9e-32, P = 6.9e-32
Identities = 89/255 (34%), Positives = 150/255 (58%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
++IL+ PGRL+ +++ + ++ L+LDEAD++LD+GF+ + IV Q+ RQT
Sbjct: 237 VHILIACPGRLIDLLEQNVT-NLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTL 295
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNR-LQQTAMIVPLEQKLDMLWSFIK 127
++SAT K VQ LA+ K+ Q + V+ S+T T R ++Q ++ +K+ L S ++
Sbjct: 296 MWSATWPKEVQALAKDLCKE-QPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQ 354
Query: 128 AHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 184
N +I+VF+ + K ++ +A + G+P +C++G KQ+ R + +F +S
Sbjct: 355 RIFKDNDRIIVFVETKKNADFITKALRL--DGMPALCIHGDKKQEERRWVLNEFKTGKSP 412
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244
++ TDVASRGLD K V +V+ D P + Y+HR+GRT R S G S FLT + ++
Sbjct: 413 IMIATDVASRGLDI-KNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRL 471
Query: 245 ---LEK-LREAKIPI 255
L K LRE++ P+
Sbjct: 472 AKDLVKILRESEQPV 486
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 362 (132.5 bits), Expect = 6.9e-32, P = 6.9e-32
Identities = 89/255 (34%), Positives = 150/255 (58%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
++IL+ PGRL+ +++ + ++ L+LDEAD++LD+GF+ + IV Q+ RQT
Sbjct: 237 VHILIACPGRLIDLLEQNVT-NLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTL 295
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNR-LQQTAMIVPLEQKLDMLWSFIK 127
++SAT K VQ LA+ K+ Q + V+ S+T T R ++Q ++ +K+ L S ++
Sbjct: 296 MWSATWPKEVQALAKDLCKE-QPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQ 354
Query: 128 AHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 184
N +I+VF+ + K ++ +A + G+P +C++G KQ+ R + +F +S
Sbjct: 355 RIFKDNDRIIVFVETKKNADFITKALRL--DGMPALCIHGDKKQEERRWVLNEFKTGKSP 412
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244
++ TDVASRGLD K V +V+ D P + Y+HR+GRT R S G S FLT + ++
Sbjct: 413 IMIATDVASRGLDI-KNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRL 471
Query: 245 ---LEK-LREAKIPI 255
L K LRE++ P+
Sbjct: 472 AKDLVKILRESEQPV 486
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 367 (134.2 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 121/411 (29%), Positives = 199/411 (48%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGR++ H+ + + D L +LILDEADR+L GF + +V PK RQT L
Sbjct: 290 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTML 349
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD--MLWSFIK 127
FSAT T+ V++L +LSL P LS + S P ++ I + +L S
Sbjct: 350 FSATMTEEVKELVKLSLNKPLRLSA-DPSARRPPGLTEEVVRIRRTREANQEAVLLSLCT 408
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSV-- 185
SK+++F + KQ + + L G+ L+G + Q +R+ F K+ V
Sbjct: 409 RTFKSKVIIF-SGTKQAAHRLKILFGLA-GLKAAELHGNLTQAQRLDSLELF-RKQEVDF 465
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVA+RGLD V V+ CP ++ SY+HRVGRTAR G +V F+T ++ +L
Sbjct: 466 LIATDVAARGLDII-GVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLL 524
Query: 246 E--------KLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSV 297
+ KL+ IP ++ + + +A++ D + +KA + + ++
Sbjct: 525 KVIAKKVGSKLKSRVIPEQSIVKWSQIIDEMEDQYSAVISAERD-ERALRKAEMEFAKAE 583
Query: 298 HIQKDK-EVFDVTKLS--IDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKL 354
++ + + E++ K + + E L + K N G++V D KE K
Sbjct: 584 NMLEHRDEIYARPKRTWFMTEKEKKL-VAQAEKDSAGNPAGGELVSADRAEDLKMKE-KR 641
Query: 355 MISREKLLPDNFTEE-NVDRDILETKDIEDEGKADLLEDVMRATRVKKNKK 404
REK LP + R++LE + E+E + + ++ +R K KK
Sbjct: 642 KREREKNLPRKKRRKLEAAREMLEDNEGEEEEEDEEGDEKRGRSRGKDKKK 692
>TAIR|locus:2054688 [details] [associations]
symbol:AT2G07750 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AC004483 IPI:IPI00546939 PIR:E84488
RefSeq:NP_178818.1 UniGene:At.52694 ProteinModelPortal:O80792
SMR:O80792 PaxDb:O80792 PRIDE:O80792 EnsemblPlants:AT2G07750.1
GeneID:815422 KEGG:ath:AT2G07750 GeneFarm:994 TAIR:At2g07750
InParanoid:O80792 OMA:FRKTALK PhylomeDB:O80792
ProtClustDB:CLSN2713541 Genevestigator:O80792 GermOnline:AT2G07750
Uniprot:O80792
Length = 845
Score = 367 (134.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 95/327 (29%), Positives = 175/327 (53%)
Query: 11 ILVCTPGRLLQHMDETPNFDCS--QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
IL+ TPGRLL H++ L++ I+DEAD +LD+GFK+ + I+ LP+ RQ+
Sbjct: 507 ILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSL 566
Query: 69 LFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 127
LFSAT K V+ +++L LK D Y+ T ++++Q+ ++ P E ++ +K
Sbjct: 567 LFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHESHFHLVPHLLK 626
Query: 128 AHLNS----KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK- 182
H+N+ KI+VF ++ ++ ++++ + + ++ R Q R + +F E
Sbjct: 627 EHINNMPDYKIIVFCSTGMVTSLMYTLLREMK--LNVREIHARKPQLHRTCVSDEFKESN 684
Query: 183 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 242
R +L +DV++RG+++ V V+QV P D YIHR+GRT R GG+ +L + P E
Sbjct: 685 RLILVTSDVSARGMNYPD-VTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWER 743
Query: 243 KMLEKLREAKI-PIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQK 301
L++L++ + PI +++ V +A + ++ A A++ Y SV +
Sbjct: 744 YFLDELKDLPLEPIPAPDLDSRVKHQVDQSMAKIDTS---IKEAAYHAWLGYYNSVR-ET 799
Query: 302 DKEVFDVTKLSIDEFSASLGLPMTPKI 328
++ + +L+ + F S+GL P +
Sbjct: 800 GRDKTTLAELA-NRFCHSIGLEKPPAL 825
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 360 (131.8 bits), Expect = 2.1e-31, P = 2.1e-31
Identities = 82/241 (34%), Positives = 137/241 (56%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+++V +PGR+L H++ T F+ ++ I+DEADR+ F++ +N I+ +PK R T+L
Sbjct: 239 HVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYL 298
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT T V L R SL +P + V S T + L Q + VP + K D ++I
Sbjct: 299 FSATMTSKVAKLQRASLVNP--VKVQVASKYQTVDTLLQQYLFVPFKYK-DCYLAYILNE 355
Query: 130 LNSKI-LVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLF 187
L + ++F ++C + + L G + + G M Q +R+A +F + +S+L
Sbjct: 356 LAGNLTIIFTSTCASSTKIAMMLRNL--GFGAIPINGDMDQGKRLASLNKFKQGTKSILV 413
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEK 247
TDVA+RGLD +VD V+ D P + Y+HRVGRTAR + GR++ +T +++M ++
Sbjct: 414 ATDVAARGLDI-PSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQR 472
Query: 248 L 248
+
Sbjct: 473 I 473
>UNIPROTKB|F1S0U0 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:CU326339
Ensembl:ENSSSCT00000006300 Uniprot:F1S0U0
Length = 784
Score = 226 (84.6 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 60/177 (33%), Positives = 93/177 (52%)
Query: 96 EESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKK-- 153
E+ V P++L+ ++ + QK K + K++VF +SC+ V++ F +
Sbjct: 439 EQHVALVPSKLRLVSLAAFILQKC-------KFEPDQKMIVFFSSCELVEFHHSLFLQTL 491
Query: 154 ------LRPG-IP-------LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDF 198
L PG +P + L+G M+Q+ R A++ +F K VL CTDVA+RGLD
Sbjct: 492 LGGSGALAPGRLPSASPPLTFLRLHGDMEQEERTAVFQEFSRSKAGVLLCTDVAARGLDL 551
Query: 199 NKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPI 255
+ V W+VQ P A Y+HR+GRTAR G S+L L P+E + + L KI +
Sbjct: 552 PQ-VTWIVQYTAPSSPAEYVHRIGRTARIGFQGSSLLILAPSEAEYVNSLASHKIKV 607
Score = 194 (73.4 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 47/102 (46%), Positives = 67/102 (65%)
Query: 2 EKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKK----ALNA 56
EK + + +NIL+ TPGRL+ H+ T N +++ LILDEADR+LD+GF+K LNA
Sbjct: 306 EKARLRKGINILISTPGRLVDHIKSTKNMRFCRIRWLILDEADRLLDLGFEKDIALILNA 365
Query: 57 IVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEES 98
+ ++ P+ RQ L SAT T+ V LA +SL +P +SV E S
Sbjct: 366 VNAERPE-RQNVLLSATLTEGVTRLADISLHEPVRISVLEGS 406
Score = 63 (27.2 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 101 ATPNRLQQTAMIVPLEQKLDMLWSFI----KAHLNSKILVFLTSCKQVKYVFEAF 151
A P L+Q +VP + +L L +FI K + K++VF +SC+ V++ F
Sbjct: 433 AIPVGLEQHVALVPSKLRLVSLAAFILQKCKFEPDQKMIVFFSSCELVEFHHSLF 487
Score = 48 (22.0 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 286 AQKAFITYLRS--VHIQKDKEVFDVTKLSIDEFSASLGLPMTPK 327
A+KA +++R+ + ++ K +F V L + + S GL PK
Sbjct: 668 AKKALQSFVRAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPK 711
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 357 (130.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 85/249 (34%), Positives = 140/249 (56%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
N++V TPGR+L H++ T F+ L+ L+ DEAD++L F+ ++N ++ LP +R TFL
Sbjct: 276 NVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRITFL 335
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT TK+V L + LK+P + V + +T + L +T + +PL+ K L S +
Sbjct: 336 FSATMTKNVAKLKKACLKNP--VKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHY 393
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVLFC 188
I++F +C + + + L G+ +CL+G++ Q++R++ F K ++L
Sbjct: 394 QTRNIIIFTNTCATAQKLNFFCRNL--GLKSICLHGKLTQNQRLSSLNSFKVNKYNILIS 451
Query: 189 TDVASRGLDFNKAVDWVVQVD-CPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK---M 244
T V +RGLD + V+ D C YIHRVGRTAR G+S+ F+T +++
Sbjct: 452 TQVGARGLDLQD-IKIVINFDIC--SCKEYIHRVGRTARAGRSGKSITFVTQYDVENFLA 508
Query: 245 LEKLREAKI 253
+EK KI
Sbjct: 509 IEKQLNKKI 517
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 357 (130.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 85/249 (34%), Positives = 140/249 (56%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
N++V TPGR+L H++ T F+ L+ L+ DEAD++L F+ ++N ++ LP +R TFL
Sbjct: 276 NVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRITFL 335
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT TK+V L + LK+P + V + +T + L +T + +PL+ K L S +
Sbjct: 336 FSATMTKNVAKLKKACLKNP--VKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHY 393
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVLFC 188
I++F +C + + + L G+ +CL+G++ Q++R++ F K ++L
Sbjct: 394 QTRNIIIFTNTCATAQKLNFFCRNL--GLKSICLHGKLTQNQRLSSLNSFKVNKYNILIS 451
Query: 189 TDVASRGLDFNKAVDWVVQVD-CPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK---M 244
T V +RGLD + V+ D C YIHRVGRTAR G+S+ F+T +++
Sbjct: 452 TQVGARGLDLQD-IKIVINFDIC--SCKEYIHRVGRTARAGRSGKSITFVTQYDVENFLA 508
Query: 245 LEKLREAKI 253
+EK KI
Sbjct: 509 IEKQLNKKI 517
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 339 (124.4 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 85/246 (34%), Positives = 133/246 (54%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
L+ILV TPGRLL + ET + + L++ +LDEAD +LD+GF K + +I+S+LPK RQT
Sbjct: 126 LDILVATPGRLLD-LIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTL 184
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT ++ LA L DP + + E+VT + + Q+ + K+ +L++ +
Sbjct: 185 LFSATMPAEIEILAEAILTDPTKIQITAETVTI--DLVNQSVYHLDKSNKVPLLFNILTK 242
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKL--RPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SV 185
K+L+F CK KY + K + I L+ Q R F + V
Sbjct: 243 ADYEKVLIF---CK-TKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRV 298
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVA+RG+D + + V+ + PED +YIHR+GRTAR G ++ F +++ L
Sbjct: 299 LVATDVAARGIDVDN-ITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQL 357
Query: 246 EKLREA 251
+ +
Sbjct: 358 TNIENS 363
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 346 (126.9 bits), Expect = 2.3e-30, Sum P(2) = 2.3e-30
Identities = 86/248 (34%), Positives = 143/248 (57%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGR+L H++ ++ ++LDEAD +L++GF + + AI++ +P+ QT L
Sbjct: 122 HIIVGTPGRILDHINRK-TLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT ++ +A + +PQ++ V + VT PN +QQ + V ++K D+L +
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTM-PN-IQQFYLEVQEKKKFDVLTRLLDIQ 238
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
+VF + ++V + EA LR G ++G + Q +RM++ +F E VL
Sbjct: 239 SPELAIVFGRTKRRVDELSEALN-LR-GYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE---MKML 245
TDVA+RGLD + V V D P+D SY+HR+GRT R G ++LF+TP E +K +
Sbjct: 297 TDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 246 EKLREAKI 253
E+ + K+
Sbjct: 356 ERTTKRKM 363
Score = 39 (18.8 bits), Expect = 2.3e-30, Sum P(2) = 2.3e-30
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 444 QDQKTEYYKKIREEL 458
+++ YYK+I EE+
Sbjct: 391 ENENLAYYKRIAEEM 405
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 346 (126.9 bits), Expect = 2.5e-30, Sum P(2) = 2.5e-30
Identities = 89/243 (36%), Positives = 133/243 (54%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
++++ TPGRL+ H+ L+ILILDEADR+LD+GFK +N IV P +RQT L
Sbjct: 313 DVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTML 372
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP--LEQKLDMLWSFIK 127
FSAT V+ LA+LSL+ P + V + + T Q+ I P L + +L S
Sbjct: 373 FSATLNDEVKTLAKLSLQQPIRVQV-DALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCT 431
Query: 128 AHLNSK-ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SV 185
N ++F S K+V + F + L+G + Q++R QF + + +
Sbjct: 432 RVFNQGGTIIFCRSKKEVHRLRIIFGL--SDLKAAELHGNLSQEQRFDSLQQFRDGQVNY 489
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L +DVASRGLD V V+ + P ++A+YIHRVGRTAR G+S F+T + K+L
Sbjct: 490 LLASDVASRGLDII-GVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLL 548
Query: 246 EKL 248
+ +
Sbjct: 549 KDI 551
Score = 53 (23.7 bits), Expect = 2.5e-30, Sum P(2) = 2.5e-30
Identities = 27/111 (24%), Positives = 48/111 (43%)
Query: 350 KEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINV 409
K +K + EK++ + + +TK ED+ K +L + + V KKLK
Sbjct: 598 KAEKTLDKAEKIISNADANVETPKVWYKTKQEEDKSK-ELWK--IENNIVNPGKKLKA-- 652
Query: 410 HRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKR 460
P+ V N VP + L K+ L + Q+ +++ +EE +R
Sbjct: 653 --PIDVTGV-----NNVPSIKKLKQKKDPYYGLSRKQRR--HRQFKEEFER 694
Score = 40 (19.1 bits), Expect = 5.7e-29, Sum P(2) = 5.7e-29
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 445 DQKTEYYKKI-REELKRAD 462
++ TE K I REE+K AD
Sbjct: 577 EELTEDIKSIVREEMKEAD 595
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 346 (126.9 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 86/248 (34%), Positives = 143/248 (57%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGR+L H++ ++ ++LDEAD +L++GF + + AI++ +P+ QT L
Sbjct: 122 HIIVGTPGRILDHINRK-TLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT ++ +A + +PQ++ V + VT PN +QQ + V ++K D+L +
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTM-PN-IQQFYLEVQEKKKFDVLTRLLDIQ 238
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
+VF + ++V + EA LR G ++G + Q +RM++ +F E VL
Sbjct: 239 SPELAIVFGRTKRRVDELSEALN-LR-GYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE---MKML 245
TDVA+RGLD + V V D P+D SY+HR+GRT R G ++LF+TP E +K +
Sbjct: 297 TDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 246 EKLREAKI 253
E+ + K+
Sbjct: 356 ERTTKRKM 363
Score = 39 (18.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 444 QDQKTEYYKKIREEL 458
+++ YYK+I EE+
Sbjct: 391 ENENLAYYKRIAEEM 405
Score = 39 (18.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 367 TEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTV 426
T+ +DR T D EG+ L+ + +++T +N + ++ + ++ + + TV
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENEN----LAYYKRIAEEMLEENDSVTV 414
Query: 427 PPLAMLADTKNANVS 441
A+ TK + +
Sbjct: 415 VAAALKMMTKEPDTT 429
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 346 (126.9 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 86/248 (34%), Positives = 143/248 (57%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGR+L H++ ++ ++LDEAD +L++GF + + AI++ +P+ QT L
Sbjct: 122 HIIVGTPGRILDHINRK-TLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT ++ +A + +PQ++ V + VT PN +QQ + V ++K D+L +
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTM-PN-IQQFYLEVQEKKKFDVLTRLLDIQ 238
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
+VF + ++V + EA LR G ++G + Q +RM++ +F E VL
Sbjct: 239 SPELAIVFGRTKRRVDELSEALN-LR-GYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE---MKML 245
TDVA+RGLD + V V D P+D SY+HR+GRT R G ++LF+TP E +K +
Sbjct: 297 TDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 246 EKLREAKI 253
E+ + K+
Sbjct: 356 ERTTKRKM 363
Score = 39 (18.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 444 QDQKTEYYKKIREEL 458
+++ YYK+I EE+
Sbjct: 391 ENENLAYYKRIAEEM 405
Score = 39 (18.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 367 TEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTV 426
T+ +DR T D EG+ L+ + +++T +N + ++ + ++ + + TV
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENEN----LAYYKRIAEEMLEENDSVTV 414
Query: 427 PPLAMLADTKNANVS 441
A+ TK + +
Sbjct: 415 VAAALKMMTKEPDTT 429
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 346 (126.9 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 86/248 (34%), Positives = 143/248 (57%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGR+L H++ ++ ++LDEAD +L++GF + + AI++ +P+ QT L
Sbjct: 122 HIIVGTPGRILDHINRK-TLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT ++ +A + +PQ++ V + VT PN +QQ + V ++K D+L +
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTM-PN-IQQFYLEVQEKKKFDVLTRLLDIQ 238
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
+VF + ++V + EA LR G ++G + Q +RM++ +F E VL
Sbjct: 239 SPELAIVFGRTKRRVDELSEALN-LR-GYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE---MKML 245
TDVA+RGLD + V V D P+D SY+HR+GRT R G ++LF+TP E +K +
Sbjct: 297 TDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 246 EKLREAKI 253
E+ + K+
Sbjct: 356 ERTTKRKM 363
Score = 39 (18.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 444 QDQKTEYYKKIREEL 458
+++ YYK+I EE+
Sbjct: 391 ENENLAYYKRIAEEM 405
Score = 39 (18.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 367 TEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTV 426
T+ +DR T D EG+ L+ + +++T +N + ++ + ++ + + TV
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENEN----LAYYKRIAEEMLEENDSVTV 414
Query: 427 PPLAMLADTKNANVS 441
A+ TK + +
Sbjct: 415 VAAALKMMTKEPDTT 429
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 346 (126.9 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 86/248 (34%), Positives = 143/248 (57%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGR+L H++ ++ ++LDEAD +L++GF + + AI++ +P+ QT L
Sbjct: 122 HIIVGTPGRILDHINRK-TLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT ++ +A + +PQ++ V + VT PN +QQ + V ++K D+L +
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTM-PN-IQQFYLEVQEKKKFDVLTRLLDIQ 238
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
+VF + ++V + EA LR G ++G + Q +RM++ +F E VL
Sbjct: 239 SPELAIVFGRTKRRVDELSEALN-LR-GYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE---MKML 245
TDVA+RGLD + V V D P+D SY+HR+GRT R G ++LF+TP E +K +
Sbjct: 297 TDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 246 EKLREAKI 253
E+ + K+
Sbjct: 356 ERTTKRKM 363
Score = 39 (18.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 444 QDQKTEYYKKIREEL 458
+++ YYK+I EE+
Sbjct: 391 ENENLAYYKRIAEEM 405
Score = 39 (18.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 367 TEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTV 426
T+ +DR T D EG+ L+ + +++T +N + ++ + ++ + + TV
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENEN----LAYYKRIAEEMLEENDSVTV 414
Query: 427 PPLAMLADTKNANVS 441
A+ TK + +
Sbjct: 415 VAAALKMMTKEPDTT 429
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 346 (126.9 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 86/248 (34%), Positives = 143/248 (57%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGR+L H++ ++ ++LDEAD +L++GF + + AI++ +P+ QT L
Sbjct: 122 HIIVGTPGRILDHINRK-TLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT ++ +A + +PQ++ V + VT PN +QQ + V ++K D+L +
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTM-PN-IQQFYLEVQEKKKFDVLTRLLDIQ 238
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
+VF + ++V + EA LR G ++G + Q +RM++ +F E VL
Sbjct: 239 SPELAIVFGRTKRRVDELSEALN-LR-GYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE---MKML 245
TDVA+RGLD + V V D P+D SY+HR+GRT R G ++LF+TP E +K +
Sbjct: 297 TDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 246 EKLREAKI 253
E+ + K+
Sbjct: 356 ERTTKRKM 363
Score = 39 (18.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 444 QDQKTEYYKKIREEL 458
+++ YYK+I EE+
Sbjct: 391 ENENLAYYKRIAEEM 405
Score = 39 (18.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 367 TEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTV 426
T+ +DR T D EG+ L+ + +++T +N + ++ + ++ + + TV
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENEN----LAYYKRIAEEMLEENDSVTV 414
Query: 427 PPLAMLADTKNANVS 441
A+ TK + +
Sbjct: 415 VAAALKMMTKEPDTT 429
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 357 (130.7 bits), Expect = 2.9e-30, P = 2.9e-30
Identities = 89/250 (35%), Positives = 135/250 (54%)
Query: 2 EKEHV--NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVS 59
E+E+V ++++ TPGR + HM + +F L+IL+LDEADR+L+ GF LN I++
Sbjct: 411 EQENVLKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILT 470
Query: 60 QLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP--LEQ 117
+PK RQT LFSAT T SV L R+ L P L V + TA +Q+ + P ++
Sbjct: 471 TIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAV-TLVQEFVRLRPGREDK 529
Query: 118 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYA 177
+L L K +++VF K+ V F L G+ L+G M Q++R+
Sbjct: 530 RLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLL--GLKAAELHGSMSQEQRIKSVE 587
Query: 178 QFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 236
F + + L TD+ASRGLD K V+ V+ + P+ Y+HRVGRTAR GR+
Sbjct: 588 SFRDGNVNFLLATDLASRGLDI-KGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTI 646
Query: 237 LTPTEMKMLE 246
+ K+++
Sbjct: 647 AAEPDRKVVK 656
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 346 (126.9 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 86/248 (34%), Positives = 143/248 (57%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGR+L H++ ++ ++LDEAD +L++GF + + AI++ +P+ QT L
Sbjct: 122 HIIVGTPGRILDHINRK-TLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT ++ +A + +PQ++ V + VT PN +QQ + V ++K D+L +
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTM-PN-IQQFYLEVQEKKKFDVLTRLLDIQ 238
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
+VF + ++V + EA LR G ++G + Q +RM++ +F E VL
Sbjct: 239 SPELAIVFGRTKRRVDELSEALN-LR-GYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE---MKML 245
TDVA+RGLD + V V D P+D SY+HR+GRT R G ++LF+TP E +K +
Sbjct: 297 TDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 246 EKLREAKI 253
E+ + K+
Sbjct: 356 ERTTKRKM 363
Score = 39 (18.8 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 444 QDQKTEYYKKIREEL 458
+++ YYK+I EE+
Sbjct: 391 ENENLAYYKRIAEEM 405
Score = 39 (18.8 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 367 TEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTV 426
T+ +DR T D EG+ L+ + +++T +N + ++ + ++ + + TV
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENEN----LAYYKRIAEEMLEENDSVTV 414
Query: 427 PPLAMLADTKNANVS 441
A+ TK + +
Sbjct: 415 VAAALKMMTKEPDTT 429
>TAIR|locus:2038431 [details] [associations]
symbol:AT1G63250 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 EMBL:AC022355 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 UniGene:At.52694 ProtClustDB:CLSN2713541
IPI:IPI00538833 PIR:C96658 RefSeq:NP_176514.1 UniGene:At.36158
ProteinModelPortal:Q9C8S9 SMR:Q9C8S9 PaxDb:Q9C8S9 PRIDE:Q9C8S9
EnsemblPlants:AT1G63250.1 GeneID:842631 KEGG:ath:AT1G63250
GeneFarm:1027 TAIR:At1g63250 InParanoid:Q9C8S9 OMA:TSSRAHI
PhylomeDB:Q9C8S9 Genevestigator:Q9C8S9 GermOnline:AT1G63250
Uniprot:Q9C8S9
Length = 798
Score = 356 (130.4 bits), Expect = 3.7e-30, P = 3.7e-30
Identities = 94/327 (28%), Positives = 173/327 (52%)
Query: 11 ILVCTPGRLLQHMDETPNFDCS--QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
IL+ TPGRLL H++ L++ I+DEAD +LD+GF++ + I+ LP+ RQ+
Sbjct: 460 ILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSL 519
Query: 69 LFSATQTKSVQDLARLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 127
LFSAT K V+ +++L LK D Y+ T ++++Q+ ++ P E ++ +K
Sbjct: 520 LFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPHESHFHLVPHLLK 579
Query: 128 AHLNS----KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK- 182
H+N+ KI+VF ++ ++ ++++ + + ++ R Q R + +F E
Sbjct: 580 EHINNTPDYKIIVFCSTGMVTSLMYTLLREMK--LNVREIHARKPQLHRTRVSDEFKESN 637
Query: 183 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 242
R +L +DV++RG+++ V V+QV P D YIHR+GRT R GG +L + P E
Sbjct: 638 RLILVTSDVSARGMNYPD-VTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWER 696
Query: 243 KMLEKLREAKI-PIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQK 301
L++L++ + PI ++ V +A + ++ A A++ Y SV +
Sbjct: 697 YFLDELKDLPLEPIPAPDLDSIVKHQVDQSMAKIDTS---IKEAAYHAWLGYYNSVR-ET 752
Query: 302 DKEVFDVTKLSIDEFSASLGLPMTPKI 328
++ + +L+ + F S+GL P +
Sbjct: 753 GRDKTTLAELA-NRFCHSIGLEKPPAL 778
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 332 (121.9 bits), Expect = 6.9e-30, Sum P(2) = 6.9e-30
Identities = 84/252 (33%), Positives = 135/252 (53%)
Query: 6 VNELNILVCTPGRLLQHMDETPNFD--CSQLQILILDEADRILDVGFKKALNAIVSQLPK 63
V+ +I++ TPGR+ ++ P+ S+ + L+LDEADR+LDVGF+ L I LPK
Sbjct: 174 VSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPK 233
Query: 64 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLW 123
RQT LFSAT T ++Q L S + +E T + L Q + + K ++
Sbjct: 234 SRQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTV--DTLTQQFIFEDKDAK-ELYL 290
Query: 124 SFIKAHLNSK----ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
I + + K ++F+++C+ + + +L + + ++ Q R++ ++F
Sbjct: 291 VHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELE--VENIAMHSLNSQSMRLSALSKF 348
Query: 180 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
K +L TDVASRGLD VD V+ D P D Y+HRVGRTAR GG +V +T
Sbjct: 349 KSGKVPILLATDVASRGLDI-PTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIIT 407
Query: 239 PTEMKMLEKLRE 250
T++K++ K+ E
Sbjct: 408 ETDVKLIHKIEE 419
Score = 49 (22.3 bits), Expect = 6.9e-30, Sum P(2) = 6.9e-30
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 328 IRFLNQKKGK-MVPV--KPVLDNAE--KEDKLM-ISREKLLPDNFTEENVDRDILETKDI 381
I + ++ GK M P K + D+ E K K ++ K+L + F ++ DR L+ K +
Sbjct: 414 IHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRRKLKRKTL 473
Query: 382 EDEG 385
D+G
Sbjct: 474 ADKG 477
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 332 (121.9 bits), Expect = 8.7e-30, P = 8.7e-30
Identities = 74/241 (30%), Positives = 134/241 (55%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+++L+ TPGRLL H+ + + +QL L+ DEADR+LD+GF + A++ Q+P RQT
Sbjct: 126 IDVLIATPGRLLDHLRQGA-LNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTL 184
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT S+ ++ L+DP+ + V + + TA +++Q + ++K + + +++
Sbjct: 185 LFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAA--QIEQRVYAIDSDRKTEFVSHLVRS 242
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLF 187
++L+F + + V + KL G+ +G + Q R + +F + VL
Sbjct: 243 KNWQQVLIFSRTKQGVDKLTAQLNKL--GVATQSFHGDLSQGAREKVLQEFKQGLVQVLV 300
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEK 247
TDVA+RGLD + + +V+ + P YIHR+GRT R S G ++ + + +LE+
Sbjct: 301 ATDVAARGLDIAE-LQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEE 359
Query: 248 L 248
+
Sbjct: 360 V 360
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 332 (121.9 bits), Expect = 8.7e-30, P = 8.7e-30
Identities = 74/241 (30%), Positives = 134/241 (55%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+++L+ TPGRLL H+ + + +QL L+ DEADR+LD+GF + A++ Q+P RQT
Sbjct: 126 IDVLIATPGRLLDHLRQGA-LNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTL 184
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT S+ ++ L+DP+ + V + + TA +++Q + ++K + + +++
Sbjct: 185 LFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAA--QIEQRVYAIDSDRKTEFVSHLVRS 242
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLF 187
++L+F + + V + KL G+ +G + Q R + +F + VL
Sbjct: 243 KNWQQVLIFSRTKQGVDKLTAQLNKL--GVATQSFHGDLSQGAREKVLQEFKQGLVQVLV 300
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEK 247
TDVA+RGLD + + +V+ + P YIHR+GRT R S G ++ + + +LE+
Sbjct: 301 ATDVAARGLDIAE-LQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEE 359
Query: 248 L 248
+
Sbjct: 360 V 360
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 349 (127.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 90/246 (36%), Positives = 137/246 (55%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I++ TPGRL+ M E + + ++ L+LDEADR+LD+GF+ + IVSQ+ RQT
Sbjct: 289 VEIVIATPGRLID-MLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTL 347
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
L+SAT + V+ LAR L+DP + + A + + Q IVP +K + L + +K
Sbjct: 348 LWSATWPREVETLARQFLRDPYKAIIGSTDLKANQS-INQVIEIVPTPEKYNRLLTLLKQ 406
Query: 129 HLN-SKILVFLTS---CKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKR 183
++ SKIL+F+ + C QV ++LR G P + ++G Q R + A+F R
Sbjct: 407 LMDGSKILIFVETKRGCDQVT------RQLRMDGWPALAIHGDKTQSERDRVLAEFKSGR 460
Query: 184 S-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 242
S ++ TDVA+RGLD K + VV D P + YIHR+GRT R + G + F T
Sbjct: 461 SPIMTATDVAARGLDV-KDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNA 519
Query: 243 KMLEKL 248
K +L
Sbjct: 520 KFAREL 525
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 334 (122.6 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 85/243 (34%), Positives = 131/243 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
L++LV TPGRLL+H+ N D SQ++ L+LDEADR+LD+GF + ++ + QT
Sbjct: 142 LDVLVATPGRLLEHL-ALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQTL 200
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
+FSAT + V+ LA LK P+ +SV +E+ T+ +++Q V E+K ++L I
Sbjct: 201 MFSATFSDRVKSLANQLLKSPKTISVSKENTTS--GKIKQAVYWVTEERKRELLSELIGV 258
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLF 187
+ ++LVF + + + + K GI +G Q R QF E K VL
Sbjct: 259 NNWQQVLVFAGTKESANTLAKELKL--DGIKAALCHGDKTQGARNKALEQFSEGKVRVLV 316
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEK 247
TDVA+RGLD +VV P Y+HRVGRT R G ++ ++P + + LE
Sbjct: 317 ATDVAARGLDIPDLA-FVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFLEN 375
Query: 248 LRE 250
+ +
Sbjct: 376 IEQ 378
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 352 (129.0 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 85/240 (35%), Positives = 129/240 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
++++ TPGR + HM + +F ++IL+LDEADR+L+ GF LN I++ LPK RQT L
Sbjct: 378 DVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML 437
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP--LEQKLDMLWSFIK 127
FSAT T SV +L R+ L P L V + T Q+ + P E+++ L K
Sbjct: 438 FSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVV-TLTQEFVRLRPGREEKRMGYLVYLCK 496
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVL 186
++++F K + F L G+ L+G M Q +R+ F + K S L
Sbjct: 497 NLYTERVIIFFRQKKIAHHARIIFGLL--GLSCAELHGSMSQIQRIQSVEAFRDGKVSFL 554
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TD+ASRGLD K VD V+ + P+ + Y+HRVGRTAR G ++ + K+++
Sbjct: 555 LATDLASRGLDI-KGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVK 613
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 351 (128.6 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 79/243 (32%), Positives = 144/243 (59%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+++V TPGRL+ H+ +P+F+ S +++L+LDEADR+L+ F+ +N ++ ++RQT L
Sbjct: 271 DVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLL 330
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD---MLWSFI 126
FSAT T+ + +LA +SL+ P + ++E + TA +L+Q + + ++ D M+ + +
Sbjct: 331 FSATMTEEIDELASMSLQKPVKIFINENTDTAL--KLRQEFIRIRAGRETDREAMVAALV 388
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SV 185
+ +VF+ + K + + L GI + + + Q +R+ ++F + V
Sbjct: 389 TRTFQTNTIVFVRTKKDCQRMQILLGLL--GIKVGQMQSSLTQGQRIESLSKFKKAEIDV 446
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TD+ASRGLD + V V+ ++ P+ + YIHRVGRTAR GRS+ + E K+L
Sbjct: 447 LVSTDLASRGLDI-EGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKLL 505
Query: 246 EKL 248
+++
Sbjct: 506 KEI 508
>UNIPROTKB|F1NM06 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:AADN02026504
EMBL:AADN02026505 EMBL:AADN02026506 EMBL:AADN02026507
EMBL:AADN02026508 EMBL:AADN02026509 EMBL:AADN02026510
IPI:IPI00573288 ProteinModelPortal:F1NM06
Ensembl:ENSGALT00000005588 Uniprot:F1NM06
Length = 690
Score = 217 (81.4 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 49/140 (35%), Positives = 78/140 (55%)
Query: 133 KILVFLTSCKQVKYVFEAFKKLRPG----------------IPLMCLYGRMKQDRRMAIY 176
K+++F +SC+QV++ +E + G + + L+G M+Q+ R ++
Sbjct: 378 KMIIFFSSCEQVEFHYELLVNVLSGELESEQPKRSSVSSVQLQFLRLHGNMEQEERTEVF 437
Query: 177 AQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 235
+F + K +L CTDVA+RGLD + V W+VQ + P A YIHR+GRTAR G S+L
Sbjct: 438 QEFLKSKTGILLCTDVAARGLDLPQ-VTWIVQYNAPASPAEYIHRIGRTARIGCHGNSLL 496
Query: 236 FLTPTEMKMLEKLREAKIPI 255
L P+E + + L KI +
Sbjct: 497 VLAPSEAEYVSLLASHKINV 516
Score = 190 (71.9 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 58/163 (35%), Positives = 84/163 (51%)
Query: 2 EKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
EK + + +NIL+ TPGRL+ H+ T + Q LI+DEADRILD+GF+K + I++
Sbjct: 215 EKARLRKGINILISTPGRLVDHIKSTECIHFRRTQWLIIDEADRILDLGFEKDVTVILNA 274
Query: 61 LPKHRQT---FLFSATQTKSVQDLARLSLKDPQYLSVHEE-------------SVTATPN 104
L R+T L SAT T+ V LA +SL DP +S+ +E ++ N
Sbjct: 275 LNAERETRQNVLLSATLTEGVTRLADISLNDPIRISIADEIRESLKPALQTEKEANSSSN 334
Query: 105 RLQQTAMIVPLEQKLDMLWSFIKAHLNSKILV-F-LTSCKQVK 145
R+ Q VP +KL + + + L L F L CK K
Sbjct: 335 RMDQENFAVP--EKLKQYFMMVPSKLRLVTLAAFVLEKCKYEK 375
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 347 (127.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 100/288 (34%), Positives = 154/288 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK-----H 64
++++ TPGRLL +++ + DCSQ+ L+LDEADR+LD GF++ + I+S P
Sbjct: 287 SVIIGTPGRLLDLINDG-SIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGS 345
Query: 65 RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS 124
RQT FSAT +SV+ LA LKDP +++ + + A+ N Q ++ K ML +
Sbjct: 346 RQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDN 405
Query: 125 FIKAHLNS-----KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
++ HL+S KIL+F+ K+ V E L ++ ++G M Q R+ F
Sbjct: 406 LLRKHLSSGGKDDKILIFVLYKKEAARV-EG--TLARKYNVVGIHGDMSQGARLQALNDF 462
Query: 180 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
K VL TDVA+RGLD K V V+ V P + Y+HR+GRT R N+ G ++ F T
Sbjct: 463 KSGKCPVLVATDVAARGLDIPK-VQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFT 521
Query: 239 PTEM----KMLEKLREAK--IPIHFTKANTKRLQPVSGLLAALLVKYP 280
P + +++ LR+AK IP K T ++P + +V P
Sbjct: 522 PQDKSHAGELVNVLRQAKQDIPEGLFKFGTA-VKPKLNAYGSRVVDVP 568
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 329 (120.9 bits), Expect = 2.0e-29, P = 2.0e-29
Identities = 86/254 (33%), Positives = 141/254 (55%)
Query: 3 KEHVNEL----NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIV 58
K+ ++EL +IL+ TPGRLL + T + S ++ L+ DEADR+LD+GFK+ ++ I
Sbjct: 117 KKQISELKVGVDILIATPGRLLDLL-RTESVSLSNIETLVFDEADRMLDMGFKEEIDQIT 175
Query: 59 SQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 118
LPK +QT LFSAT + +++ L +P+ + + E++ A + ++Q V ++K
Sbjct: 176 QYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAA--DDVEQLVYGVDADRK 233
Query: 119 LDMLWSFIKAHLNSK-ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYA 177
+ L SF+ N K +LVF T KQ A + + G+ + ++G Q R
Sbjct: 234 RE-LTSFLIGSRNWKQVLVF-TRTKQCADDL-AKEMTKDGVKSLAIHGDKSQGAREKALH 290
Query: 178 QFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 236
+F E K L TDVA+RG+D K + V+ + P + Y+HR+GRTAR + G +V
Sbjct: 291 EFKEGKVRALIATDVAARGIDI-KGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSL 349
Query: 237 LTPTEMKMLEKLRE 250
++P E +L + E
Sbjct: 350 VSPGEEWLLTAIEE 363
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 329 (120.9 bits), Expect = 2.0e-29, P = 2.0e-29
Identities = 86/254 (33%), Positives = 141/254 (55%)
Query: 3 KEHVNEL----NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIV 58
K+ ++EL +IL+ TPGRLL + T + S ++ L+ DEADR+LD+GFK+ ++ I
Sbjct: 117 KKQISELKVGVDILIATPGRLLDLL-RTESVSLSNIETLVFDEADRMLDMGFKEEIDQIT 175
Query: 59 SQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 118
LPK +QT LFSAT + +++ L +P+ + + E++ A + ++Q V ++K
Sbjct: 176 QYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAA--DDVEQLVYGVDADRK 233
Query: 119 LDMLWSFIKAHLNSK-ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYA 177
+ L SF+ N K +LVF T KQ A + + G+ + ++G Q R
Sbjct: 234 RE-LTSFLIGSRNWKQVLVF-TRTKQCADDL-AKEMTKDGVKSLAIHGDKSQGAREKALH 290
Query: 178 QFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 236
+F E K L TDVA+RG+D K + V+ + P + Y+HR+GRTAR + G +V
Sbjct: 291 EFKEGKVRALIATDVAARGIDI-KGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSL 349
Query: 237 LTPTEMKMLEKLRE 250
++P E +L + E
Sbjct: 350 VSPGEEWLLTAIEE 363
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 328 (120.5 bits), Expect = 2.6e-29, P = 2.6e-29
Identities = 82/249 (32%), Positives = 131/249 (52%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKHRQ 66
++++ TPGRL H+ + F +L+ L+LDEADR+L+ G F L I+ +P RQ
Sbjct: 122 HVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPARRQ 181
Query: 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LDML 122
T LFSAT T ++ +L L++ P + E T + L Q ++VP K + ++
Sbjct: 182 TLLFSATLTDTLNELKSLAMNRPFFWEAASE--VRTVDELDQRYLLVPEAVKDAYLVHLI 239
Query: 123 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 182
+F H + I++F +CK+ + + +K P + L+ MKQ +R A A+F
Sbjct: 240 QTFQDEHEDWSIIIFTKTCKECQILNMMLRKF--SFPSVALHSMMKQRQRFAALAKFKSS 297
Query: 183 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241
+L TDVA+RGLD V V+ + P YIHRVGRTAR G S+ +T +
Sbjct: 298 IFKILIATDVAARGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYD 356
Query: 242 MKMLEKLRE 250
+ ++ + E
Sbjct: 357 IHLVHAIEE 365
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 335 (123.0 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 87/244 (35%), Positives = 130/244 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP--KHRQT 67
+I+V TPGRL H++ + L+LDEADR+L F+ + +I+ LP + RQT
Sbjct: 124 HIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPPPEKRQT 183
Query: 68 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 127
LFSAT TK++ L ++L P ++ + S T + L+Q + +P K L +K
Sbjct: 184 LLFSATMTKNLTKLDSIALNKP-FI-FEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILK 241
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVL 186
H S +VF+ +C V+ V KL IP + L+ + Q R+A F K VL
Sbjct: 242 KHEGSSAIVFVNNCYAVEAVKGMLNKL--DIPSVSLHSFLDQKSRLAALKTFKSGKVKVL 299
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVASRGLD V V+ YIHRVGRTAR+ GR++ F+TP ++ +++
Sbjct: 300 VATDVASRGLDIPD-VQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIK 358
Query: 247 KLRE 250
+ E
Sbjct: 359 GIEE 362
Score = 42 (19.8 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 516 KAKIYFDSDSDNDNDERKQNKDDNGPNIDSI 546
K K +++ +N+N++ K K +N I I
Sbjct: 425 KEKFENNNNDNNNNNKTKTTKPENKKEITKI 455
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 346 (126.9 bits), Expect = 3.1e-29, P = 3.1e-29
Identities = 113/376 (30%), Positives = 189/376 (50%)
Query: 11 ILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70
I+V TPGRLL H+ + D S+L L+LDEAD +L +GF + + I++Q+P+ QT LF
Sbjct: 128 IVVGTPGRLLDHL-KRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186
Query: 71 SATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL 130
SAT ++++ + R +K+PQ + + + SVT P+ + Q+ V +K + L F++A
Sbjct: 187 SATMPEAIRRITRRFMKEPQEVRI-QSSVTTRPD-ISQSYWTVWGMRKNEALVRFLEAED 244
Query: 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFCT 189
++F+ + V EA + R G L G M Q R + + R +L T
Sbjct: 245 FDAAIIFVRTKNATLEVAEALE--RNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302
Query: 190 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL- 248
DVA+RGLD + + VV D P D SY+HR+GRT R GR++LF+ E ++L +
Sbjct: 303 DVAARGLDVER-ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361
Query: 249 REAKIPIHFTKANTKRLQPVSGLLAALLVKYP-DMQHRAQKAFITYLRSVHIQKDKEVFD 307
R K+ I + L L L K+ +Q + + + + R++ + K + +
Sbjct: 362 RTMKLTIPEVELPNAEL-----LGKRRLEKFAAKVQQQLESSDLDQYRAL-LSKIQPTAE 415
Query: 308 VTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFT 367
+L ++ +A+L L M R L P++P + +++D+ R P
Sbjct: 416 GEELDLETLAAAL-LKMAQGERTLIVPPD--APMRPKREFRDRDDRGPRDRNDRGPRGDR 472
Query: 368 EENVDRDILETKDIED 383
E DR E +D+ D
Sbjct: 473 E---DRPRRERRDVGD 485
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 336 (123.3 bits), Expect = 3.3e-29, P = 3.3e-29
Identities = 83/259 (32%), Positives = 142/259 (54%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+++V TPGR++ H++ + ++LDEAD +L++GF + + AI+S +P RQT L
Sbjct: 122 HVIVGTPGRIIDHINRG-TLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL 180
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT ++ +A + +P+ + V + +T PN +QQ + V ++K D+L +
Sbjct: 181 FSATMPDPIRRIAERFMNEPELVKVKAKEMTV-PN-IQQYYLEVHEKKKFDILTRLLDIQ 238
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
+VF + ++V + EA LR G ++G + Q +R+++ +F E +L
Sbjct: 239 APELAIVFGRTKRRVDELAEALN-LR-GYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVA 296
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVA+RGLD + V V D P+D SY+HR+GRT R G ++ F+TP E+ L +
Sbjct: 297 TDVAARGLDIS-GVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI 355
Query: 249 REAKIPIHFTKANTKRLQP 267
TK +R++P
Sbjct: 356 ERT------TKRKMERMKP 368
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 326 (119.8 bits), Expect = 4.3e-29, P = 4.3e-29
Identities = 85/242 (35%), Positives = 134/242 (55%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+ILV TPGRLL+++ E FD +++IL+LDEADR+LD+GF + +N IV++ +QT L
Sbjct: 137 DILVATPGRLLEYI-ENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQTML 195
Query: 70 FSAT-QTKSVQDLARLSLKDPQYL-SVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 127
FSAT ++ VQ A L +P +L S A + Q + KL++L + +K
Sbjct: 196 FSATLESPGVQLFAEEVLNEPVFLESKPSRKEKAVIH--QWLHLADDANHKLNLLVNTLK 253
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVL 186
+ +VF + V+Y+ + K +P + L G+M QD+R +F + VL
Sbjct: 254 QEGVERTVVFANKRETVQYL--SGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVL 311
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVA+RGLD + + V+ D P V YIHR+GRT R G ++ + +M ++
Sbjct: 312 VATDVAARGLDIDD-ISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIG 370
Query: 247 KL 248
K+
Sbjct: 371 KI 372
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 328 (120.5 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 82/249 (32%), Positives = 131/249 (52%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKHRQ 66
++++ TPGRL H+ + F +L+ L+LDEADR+L+ G F L I+ +P RQ
Sbjct: 125 HVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPARRQ 184
Query: 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LDML 122
T LFSAT T ++ +L L++ P + E T + L Q ++VP K + ++
Sbjct: 185 TLLFSATLTDTLNELKSLAMNRPFFWEAASE--VRTVDELDQRYLLVPEAVKDAYLVHLI 242
Query: 123 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 182
+F H + I++F +CK+ + + +K P + L+ MKQ +R A A+F
Sbjct: 243 QTFQDEHEDWSIIIFTKTCKECQILNMMLRKF--SFPSVALHSMMKQRQRFAALAKFKSS 300
Query: 183 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241
+L TDVA+RGLD V V+ + P YIHRVGRTAR G S+ +T +
Sbjct: 301 IFKILIATDVAARGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYD 359
Query: 242 MKMLEKLRE 250
+ ++ + E
Sbjct: 360 IHLVHAIEE 368
Score = 41 (19.5 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 375 ILETKD--IEDEGKADLLEDVMRATRVKKNKKLKINVHRPL 413
ILE KD +E++ KA+L A KKN K + V + L
Sbjct: 420 ILEGKDPDLEEKRKAEL------AKIKKKNNKFREKVQQTL 454
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 321 (118.1 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 86/261 (32%), Positives = 142/261 (54%)
Query: 3 KEHVNEL----NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIV 58
K +N L +ILV TPGRLL +++ + S+++ +LDEADR+LD+GF + I+
Sbjct: 127 KPQINHLRRGVDILVATPGRLLDLVNQGV-LNLSRVEFFVLDEADRMLDMGFLPDIRRIL 185
Query: 59 SQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 118
LP+ RQ LFSAT +K +++L L P + V + A R+ V ++K
Sbjct: 186 KLLPESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAA--RITHVVHPVDRQRK 243
Query: 119 LDMLWSFIKAHLN-SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYA 177
++L SF+ N ++LVF + + + + G+ ++G Q RM
Sbjct: 244 RELL-SFMIGSKNWRQVLVFTRTKHGANRLSQQLES--DGLSSAAIHGNKSQAARMRALT 300
Query: 178 QFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 236
QF + K VL TDVA+RGLD +K + V+ + P+ Y+HRVGRT R ++ G ++
Sbjct: 301 QFKQGKIRVLVATDVAARGLDIDK-LPHVINFELPDAAKDYVHRVGRTGRASNDGVAISL 359
Query: 237 LTPTEMKML---EKLREAKIP 254
++ E+++L EKL ++K+P
Sbjct: 360 VSGDEVRLLRDIEKLLQSKMP 380
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 321 (118.1 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 86/261 (32%), Positives = 142/261 (54%)
Query: 3 KEHVNEL----NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIV 58
K +N L +ILV TPGRLL +++ + S+++ +LDEADR+LD+GF + I+
Sbjct: 127 KPQINHLRRGVDILVATPGRLLDLVNQGV-LNLSRVEFFVLDEADRMLDMGFLPDIRRIL 185
Query: 59 SQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 118
LP+ RQ LFSAT +K +++L L P + V + A R+ V ++K
Sbjct: 186 KLLPESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAA--RITHVVHPVDRQRK 243
Query: 119 LDMLWSFIKAHLN-SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYA 177
++L SF+ N ++LVF + + + + G+ ++G Q RM
Sbjct: 244 RELL-SFMIGSKNWRQVLVFTRTKHGANRLSQQLES--DGLSSAAIHGNKSQAARMRALT 300
Query: 178 QFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 236
QF + K VL TDVA+RGLD +K + V+ + P+ Y+HRVGRT R ++ G ++
Sbjct: 301 QFKQGKIRVLVATDVAARGLDIDK-LPHVINFELPDAAKDYVHRVGRTGRASNDGVAISL 359
Query: 237 LTPTEMKML---EKLREAKIP 254
++ E+++L EKL ++K+P
Sbjct: 360 VSGDEVRLLRDIEKLLQSKMP 380
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 334 (122.6 bits), Expect = 2.1e-28, P = 2.1e-28
Identities = 81/242 (33%), Positives = 131/242 (54%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
NI+V TPGRLL H++ + + +++DEAD +L++GF + +I+S +P QT L
Sbjct: 123 NIIVGTPGRLLDHINRR-TIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 181
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT ++ +A + +P+++ V + +T + +QQ + V +K D L +
Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVS--NIQQFYLEVQERKKFDTLTRLLDIQ 239
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
+VF + ++V + EA LR G ++G + Q +RM +F E VL
Sbjct: 240 SPELAIVFGRTKRRVDELAEALN-LR-GYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVA 297
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVA+RGLD + V V D P+D SY+HR+GRT R G ++ F+TP E ML +
Sbjct: 298 TDVAARGLDIS-GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356
Query: 249 RE 250
+
Sbjct: 357 EQ 358
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 334 (122.6 bits), Expect = 2.2e-28, P = 2.2e-28
Identities = 84/243 (34%), Positives = 129/243 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 214 VEICIATPGRLIDFL-EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 272
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFI 126
++SAT K V+ LA L+D ++V ++A N LQ + + E+ KL L I
Sbjct: 273 MWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEI 332
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
A +K ++F+ + ++ + + R G P MC++G Q R + +F K +
Sbjct: 333 MAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDWVLNEFRSGKAPI 390
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVASRGLD V +V+ D P Y+HR+GRTAR + G + F TP +K
Sbjct: 391 LIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 449
Query: 246 EKL 248
+L
Sbjct: 450 REL 452
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 319 (117.4 bits), Expect = 2.7e-28, P = 2.7e-28
Identities = 89/251 (35%), Positives = 136/251 (54%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGRLL+H+ N S + L+LDEADR+LD+GF + I+ + K RQ L
Sbjct: 126 DIIVATPGRLLEHLTAC-NLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNLL 184
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIK 127
FSAT + +V+ LA + PQ +S +++ TA + + Q ++ P+EQ K ++L I
Sbjct: 185 FSATFSSAVKKLANEMMIKPQVISADKQNTTA--DTVSQ--VVYPVEQRRKRELLSELIG 240
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
++LVF T+ + K+L GIP ++G Q R +F K V
Sbjct: 241 KKNWQQVLVF-TATRDAADTL--VKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRV 297
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L T+VA+RGLD ++++VV D P Y+HR+GRT R G ++ F++ E + L
Sbjct: 298 LVATEVAARGLDI-PSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTL 356
Query: 246 ---EKLREAKI 253
EKL KI
Sbjct: 357 ADIEKLIGQKI 367
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 338 (124.0 bits), Expect = 3.4e-28, P = 3.4e-28
Identities = 84/244 (34%), Positives = 132/244 (54%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 216 VEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 274
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFI 126
++SAT K V+ LA L+D ++V ++A N LQ + + E+ KL L I
Sbjct: 275 MWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEI 334
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
A +K ++F+ + ++ + + R G P MC++G Q R + +F K +
Sbjct: 335 MAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDWVLNEFRSGKAPI 392
Query: 186 LFCTDVASRGLDFN-KAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244
L TDVASRGL F+ + V +V+ D P Y+HR+GRTAR + G + F TP +K
Sbjct: 393 LIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQ 452
Query: 245 LEKL 248
+L
Sbjct: 453 AREL 456
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 335 (123.0 bits), Expect = 4.0e-28, P = 4.0e-28
Identities = 81/241 (33%), Positives = 132/241 (54%)
Query: 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
N I+V TPGRL H+ + + L+LDEAD +L +GF L I +P+ RQ
Sbjct: 124 NGAQIVVATPGRLCDHLRRDEKV-LATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182
Query: 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 126
T LFSAT +S++ +A LKDP+++ + +S T T ++Q ++V +QK + S +
Sbjct: 183 TVLFSATLPQSIRAIAERHLKDPKHVKI--QSKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SV 185
+ +++F+ + KQ + + + G L G + Q++R + + R +
Sbjct: 241 EVEDFDALIMFVRT-KQATLDLASALEAK-GYKAAALNGDIAQNQRERVIDSLKDGRLDI 298
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
+ TDVA+RGLD + + V VD P D SY+HR+GRT R GR++L +TP E +ML
Sbjct: 299 VVATDVAARGLDVPR-ITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRML 357
Query: 246 E 246
+
Sbjct: 358 Q 358
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 329 (120.9 bits), Expect = 4.3e-28, P = 4.3e-28
Identities = 83/249 (33%), Positives = 134/249 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKHRQ 66
+++V TPGRL H+ + + +++Q LI+DEADR+L+ G F K L I+S +P RQ
Sbjct: 122 HVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPAKRQ 181
Query: 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LDML 122
T LFSAT T ++Q L +++ P + H+ V T L Q ++ P + K + ++
Sbjct: 182 TLLFSATLTDTLQQLQSIAMNRPFFWE-HKSDVQ-TVEELDQRFILTPEKVKDAYLVHLI 239
Query: 123 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 182
+F H + I++F +CK + + ++ P + L+ MKQ +R A A+F
Sbjct: 240 QTFQDEHDDWSIIIFTNTCKSCQILTMMLREFN--FPTISLHSMMKQRQRFANLAKFKSN 297
Query: 183 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241
+L TDVA+RGLD V V+ + P YIHRVGRTAR G S+ +T +
Sbjct: 298 VFKILIATDVAARGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYD 356
Query: 242 MKMLEKLRE 250
+ ++ + E
Sbjct: 357 IHLINAIEE 365
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 337 (123.7 bits), Expect = 4.5e-28, P = 4.5e-28
Identities = 84/243 (34%), Positives = 130/243 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 216 VEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 274
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFI 126
++SAT K V+ LA L+D ++V ++A N LQ + + E+ KL L I
Sbjct: 275 MWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEI 334
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
A +K ++F+ + ++ + + R G P MC++G Q R + +F K +
Sbjct: 335 MAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDWVLNEFRSGKAPI 392
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVASRGLD V +V+ D P Y+HR+GRTAR + G + F TP +K
Sbjct: 393 LIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451
Query: 246 EKL 248
+L
Sbjct: 452 REL 454
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 337 (123.7 bits), Expect = 4.5e-28, P = 4.5e-28
Identities = 84/243 (34%), Positives = 130/243 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 216 VEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 274
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFI 126
++SAT K V+ LA L+D ++V ++A N LQ + + E+ KL L I
Sbjct: 275 MWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEI 334
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
A +K ++F+ + ++ + + R G P MC++G Q R + +F K +
Sbjct: 335 MAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDWVLNEFRSGKAPI 392
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVASRGLD V +V+ D P Y+HR+GRTAR + G + F TP +K
Sbjct: 393 LIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451
Query: 246 EKL 248
+L
Sbjct: 452 REL 454
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 337 (123.7 bits), Expect = 4.5e-28, P = 4.5e-28
Identities = 84/243 (34%), Positives = 130/243 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 216 VEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 274
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFI 126
++SAT K V+ LA L+D ++V ++A N LQ + + E+ KL L I
Sbjct: 275 MWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEI 334
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
A +K ++F+ + ++ + + R G P MC++G Q R + +F K +
Sbjct: 335 MAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDWVLNEFRSGKAPI 392
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVASRGLD V +V+ D P Y+HR+GRTAR + G + F TP +K
Sbjct: 393 LIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451
Query: 246 EKL 248
+L
Sbjct: 452 REL 454
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 330 (121.2 bits), Expect = 5.2e-28, P = 5.2e-28
Identities = 80/249 (32%), Positives = 134/249 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKHRQ 66
++++ TPGRL H+ + F +++ L++DEADR+L+ G F L AI++ +P RQ
Sbjct: 122 HVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LDML 122
T LFSAT T ++++L L+ P + ++ T +L Q ++VP + K + ++
Sbjct: 182 TLLFSATLTDTLRELQSLATNQPFFWEA--QAPVRTVEQLDQRYLLVPEKVKDAYLVHLI 239
Query: 123 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 182
+F H + I++F +CK + + +K P + L+ MKQ R A A+F
Sbjct: 240 QNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFN--FPTVALHSMMKQKERFAALAKFKSS 297
Query: 183 -RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241
+L TDVASRGLD V V+ + P YIHRVGRTAR G+++ +T +
Sbjct: 298 IYRILIATDVASRGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356
Query: 242 MKMLEKLRE 250
+ ++ + E
Sbjct: 357 IHLVHAIEE 365
>CGD|CAL0000625 [details] [associations]
symbol:SPB4 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K14809 EMBL:AACQ01000202 EMBL:AACQ01000200
RefSeq:XP_711358.1 RefSeq:XP_711406.1 ProteinModelPortal:Q59NP8
STRING:Q59NP8 GeneID:3647008 GeneID:3647042 KEGG:cal:CaO19.11631
KEGG:cal:CaO19.4154 CGD:CAL0005749 Uniprot:Q59NP8
Length = 631
Score = 332 (121.9 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
Identities = 80/246 (32%), Positives = 136/246 (55%)
Query: 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
N+ IL+ TPGR+L+ + + + S L+I+ILDEAD++LD F+K + I+ +LPK R+
Sbjct: 150 NQPQILIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRR 209
Query: 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESV----TATPNRLQQTAMIVPLEQKLDML 122
T LFSAT + + + R + +P + V ++ + +P LQ + M++ E K+ L
Sbjct: 210 TGLFSATISSAGNTIFRTGMNNPVKVQVKSKNYFGEQSNSPKSLQLSYMMINPELKITTL 269
Query: 123 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKL----RPGIPL--MCLYGRMKQDRRMAIY 176
+ + + K +V+ +C VK+ ++ F K+ PL L+G++ R+
Sbjct: 270 LTILSKYQYKKAIVYFPTCTSVKHFYQIFNKVYQQESSDEPLKFFSLHGQLNTKSRLKTL 329
Query: 177 AQFCEK-----RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG 231
F + + +L TDVA+RG+D VD V+Q+D P D ++HR GRT R N G
Sbjct: 330 DNFTQGDINLYKHILMTTDVAARGIDIPD-VDLVIQIDPPTDPNVFLHRCGRTGRANKVG 388
Query: 232 RSVLFL 237
R+++ L
Sbjct: 389 RAIVML 394
Score = 43 (20.2 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 513 RRKKAKIYFDSDSDNDNDERKQNKDD 538
RRK+ KI +++ + ERK+NK D
Sbjct: 546 RRKELKI--KNEAWSSKSERKENKLD 569
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 337 (123.7 bits), Expect = 6.3e-28, P = 6.3e-28
Identities = 84/243 (34%), Positives = 130/243 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 295 VEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 353
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFI 126
++SAT K V+ LA L+D ++V ++A N LQ + + E+ KL L I
Sbjct: 354 MWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEI 413
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
A +K ++F+ + ++ + + R G P MC++G Q R + +F K +
Sbjct: 414 MAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDWVLNEFRSGKAPI 471
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVASRGLD V +V+ D P Y+HR+GRTAR + G + F TP +K
Sbjct: 472 LIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 530
Query: 246 EKL 248
+L
Sbjct: 531 REL 533
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 337 (123.7 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 84/243 (34%), Positives = 130/243 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 295 VEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 353
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFI 126
++SAT K V+ LA L+D ++V ++A N LQ + + E+ KL L I
Sbjct: 354 MWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEI 413
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
A +K ++F+ + ++ + + R G P MC++G Q R + +F K +
Sbjct: 414 MAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDWVLNEFRSGKAPI 471
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVASRGLD V +V+ D P Y+HR+GRTAR + G + F TP +K
Sbjct: 472 LIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 530
Query: 246 EKL 248
+L
Sbjct: 531 REL 533
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 337 (123.7 bits), Expect = 6.5e-28, P = 6.5e-28
Identities = 84/243 (34%), Positives = 130/243 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 297 VEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 355
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFI 126
++SAT K V+ LA L+D ++V ++A N LQ + + E+ KL L I
Sbjct: 356 MWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEI 415
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
A +K ++F+ + ++ + + R G P MC++G Q R + +F K +
Sbjct: 416 MAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDWVLNEFRSGKAPI 473
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVASRGLD V +V+ D P Y+HR+GRTAR + G + F TP +K
Sbjct: 474 LIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 532
Query: 246 EKL 248
+L
Sbjct: 533 REL 535
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 337 (123.7 bits), Expect = 6.5e-28, P = 6.5e-28
Identities = 84/243 (34%), Positives = 130/243 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E+ + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 297 VEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 355
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFI 126
++SAT K V+ LA L+D ++V ++A N LQ + + E+ KL L I
Sbjct: 356 MWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEI 415
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
A +K ++F+ + ++ + + R G P MC++G Q R + +F K +
Sbjct: 416 MAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDWVLNEFRSGKAPI 473
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVASRGLD V +V+ D P Y+HR+GRTAR + G + F TP +K
Sbjct: 474 LIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 532
Query: 246 EKL 248
+L
Sbjct: 533 REL 535
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 336 (123.3 bits), Expect = 6.9e-28, P = 6.9e-28
Identities = 83/232 (35%), Positives = 129/232 (55%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+IL+ TPGRL+ H+ P+F S +++LILDEADR+LD F++ + I+ HRQT L
Sbjct: 339 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSLHRQTML 398
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIK 127
FSAT T V+DLA +SLK+P + V+ + A P Q+ I P + + ++ + +
Sbjct: 399 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVA-PFLRQEFIRIRPNREGDREAIVAALLM 457
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRM--AIYAQFCEKRSV 185
+++F + KQ + + G+ + L+G + Q +R A++ E+ +
Sbjct: 458 RTFTDHVMLFTQTKKQAHRMHILLGLM--GLQVGELHGNLSQTQRXLEALWRFKDEQIDI 515
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 237
L TDVA+RGLD + V V+ P + Y+HRVGRTAR GRSV L
Sbjct: 516 LVATDVAARGLDI-EGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLL 566
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 329 (120.9 bits), Expect = 7.3e-28, P = 7.3e-28
Identities = 80/249 (32%), Positives = 134/249 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKHRQ 66
++++ TPGRL H+ + F +++ L++DEADR+L+ G F L AI++ +P RQ
Sbjct: 122 HVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LDML 122
T LFSAT T ++++L L+ P + ++ +T +L Q ++VP + K + ++
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEA--QAPVSTVEQLDQRYLLVPEKVKDAYLVHLI 239
Query: 123 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 182
F H + I++F +CK + + +K P + L+ MKQ R A A+F
Sbjct: 240 QRFQDEHEDWSIIIFTNTCKTCQILCMMLRKF--SFPTVALHSMMKQKERFAALAKFKSS 297
Query: 183 -RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241
+L TDVASRGLD V V+ + P YIHRVGRTAR G+++ +T +
Sbjct: 298 IYRILIATDVASRGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356
Query: 242 MKMLEKLRE 250
+ ++ + E
Sbjct: 357 IHLVHAIEE 365
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 329 (120.9 bits), Expect = 8.3e-28, P = 8.3e-28
Identities = 80/249 (32%), Positives = 134/249 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKHRQ 66
++++ TPGRL H+ + F +++ L++DEADR+L+ G F L AI++ +P RQ
Sbjct: 122 HVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQ 181
Query: 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LDML 122
T LFSAT T ++++L L+ P + ++ T +L Q ++VP + K + ++
Sbjct: 182 TLLFSATLTDTLKELQGLATNQPFFWEA--QAPVRTVEQLDQRYLLVPEKVKDAYLVHLI 239
Query: 123 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 182
+F H + I++F +CK + + +K P + L+ MKQ R A A+F
Sbjct: 240 QNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFN--FPTVALHSMMKQKERFAALAKFKSS 297
Query: 183 -RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241
+L TDVASRGLD V V+ + P YIHRVGRTAR G+++ +T +
Sbjct: 298 IYRILIATDVASRGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356
Query: 242 MKMLEKLRE 250
+ ++ + E
Sbjct: 357 IHLVHAIEE 365
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 328 (120.5 bits), Expect = 8.9e-28, P = 8.9e-28
Identities = 80/249 (32%), Positives = 134/249 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKHRQ 66
++++ TPGRL H+ + F+ ++Q L++DEADR+L+ G F L I++ +P RQ
Sbjct: 122 HVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARRQ 181
Query: 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LDML 122
T LFSAT T ++++L L+ +P + ++ T +L Q ++VP + K + ++
Sbjct: 182 TLLFSATLTDTLKELQGLATNEPFFWEA--QATVRTVEQLDQRYLLVPEKVKDAYLVHLV 239
Query: 123 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 182
+F + I++F +CK + + +K P + L+ MKQ R A A+F
Sbjct: 240 QTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFN--FPTVALHSMMKQKERFAALAKFKSS 297
Query: 183 -RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241
+L TDVASRGLD V V+ + P YIHRVGRTAR G+++ +T +
Sbjct: 298 IYRILIATDVASRGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356
Query: 242 MKMLEKLRE 250
+ +L + E
Sbjct: 357 IHLLHAIEE 365
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 328 (120.5 bits), Expect = 8.9e-28, P = 8.9e-28
Identities = 81/249 (32%), Positives = 133/249 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALNAIVSQLPKHRQ 66
++++ TPGRL H+ + F+ +++ L+LDEADR+L+ G F L I+S +P RQ
Sbjct: 122 HVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARRQ 181
Query: 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LDML 122
T LFSAT T ++++L L+ P + ++ T +L Q ++VP + K + ++
Sbjct: 182 TLLFSATLTDTLKELQGLATNQPFFWEA--QATVRTVEQLDQRYLLVPEKVKDAYLVHLV 239
Query: 123 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 182
+F + I++F +CK + + +K P + L+ MKQ R A A+F
Sbjct: 240 QTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFN--FPTVALHSMMKQKERFAALARFKSS 297
Query: 183 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241
+L TDVASRGLD V V+ + P YIHRVGRTAR G+++ +T +
Sbjct: 298 TYRILIATDVASRGLDI-PTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356
Query: 242 MKMLEKLRE 250
+ +L + E
Sbjct: 357 IHLLHAIEE 365
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 323 (118.8 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 85/244 (34%), Positives = 127/244 (52%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGRLL H+ D S L ++LDEAD++L GF + I+ + P +QT L
Sbjct: 126 HIVVATPGRLLDHI-RRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT K ++ LA+ + +PQ + V E VT + ++Q + K D L F+
Sbjct: 185 FSATIPKDIKKLAKRYMDEPQMIQVQSEEVTV--DTIEQRVIETTDRAKPDAL-RFVMDR 241
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC--LYGRMKQDRRMAIYAQFCE-KRSVL 186
+ V C+ + + L+ G+ C L+G + Q +R + F E K L
Sbjct: 242 DQPFLAVIF--CRTKVRASKLYDNLK-GLGYNCAELHGDIPQAKRERVMKSFREAKIQYL 298
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVA+RGLD + V V D PEDV SYIHR+GRT R G ++ F+ + K LE
Sbjct: 299 IATDVAARGLDVD-GVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLE 357
Query: 247 KLRE 250
++ +
Sbjct: 358 EIEK 361
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 323 (118.8 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 85/244 (34%), Positives = 127/244 (52%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGRLL H+ D S L ++LDEAD++L GF + I+ + P +QT L
Sbjct: 126 HIVVATPGRLLDHI-RRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT K ++ LA+ + +PQ + V E VT + ++Q + K D L F+
Sbjct: 185 FSATIPKDIKKLAKRYMDEPQMIQVQSEEVTV--DTIEQRVIETTDRAKPDAL-RFVMDR 241
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC--LYGRMKQDRRMAIYAQFCE-KRSVL 186
+ V C+ + + L+ G+ C L+G + Q +R + F E K L
Sbjct: 242 DQPFLAVIF--CRTKVRASKLYDNLK-GLGYNCAELHGDIPQAKRERVMKSFREAKIQYL 298
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVA+RGLD + V V D PEDV SYIHR+GRT R G ++ F+ + K LE
Sbjct: 299 IATDVAARGLDVD-GVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLE 357
Query: 247 KLRE 250
++ +
Sbjct: 358 EIEK 361
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 330 (121.2 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 90/256 (35%), Positives = 136/256 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 139 VEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 197
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFI 126
++SAT K V+ LA LKD ++++ ++A N LQ + V ++KL L I
Sbjct: 198 MWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEI 257
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 184
+ +K +VF+ + ++ E +K+R G P M ++G Q R + +F K
Sbjct: 258 MSEKENKTIVFVETKRRCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 314
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK- 243
+L TDVASRGLD V +V+ D P YIHR+GRTAR G + F TP +K
Sbjct: 315 ILIATDVASRGLDVED-VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 373
Query: 244 ---MLEKLREAKIPIH 256
++ LREA I+
Sbjct: 374 VSDLISVLREANQAIN 389
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 332 (121.9 bits), Expect = 1.9e-27, P = 1.9e-27
Identities = 83/243 (34%), Positives = 128/243 (52%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 219 VEICIATPGRLIDFL-EVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 277
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFI 126
++SAT K V+ LA L+D +++ ++A N LQ + + E+ KL L I
Sbjct: 278 MWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEI 337
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
A +K ++F+ + K+ + + R G P MC++G Q R + +F K +
Sbjct: 338 MAEKENKTIIFVETKKRCDELTRRMR--RDGWPAMCIHGDKSQPERDWVLTEFRSGKAPI 395
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVASRGLD V +V+ D P Y+HR+GRTAR + G + F TP ++
Sbjct: 396 LIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQA 454
Query: 246 EKL 248
L
Sbjct: 455 RDL 457
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 323 (118.8 bits), Expect = 2.1e-27, P = 2.1e-27
Identities = 82/242 (33%), Positives = 133/242 (54%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+ILV TPGR+L H+ + D S+L L+LDEADR+L++GF++AL AI++ P RQT L
Sbjct: 125 HILVGTPGRILDHLSKD-RIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT S++ +A+ ++ + V E+ T + Q + + + L + + H
Sbjct: 184 FSATYPASIEQIAQSVTRNALMIKV--EATHDTSSIRQYFYKVEGSAARDEALETLLLHH 241
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
+ +VF + ++V+ V +A + G ++ L+G M+Q R QF K S+L
Sbjct: 242 QPTSSVVFCNTKREVQNVADALHQ--SGFSVIELHGDMEQRERDQALVQFANKSISILVA 299
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVA+RGLD + +D V D D ++HR+GRT R S G + F + E + ++
Sbjct: 300 TDVAARGLDVDN-LDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI 358
Query: 249 RE 250
E
Sbjct: 359 DE 360
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 330 (121.2 bits), Expect = 2.5e-27, P = 2.5e-27
Identities = 90/256 (35%), Positives = 136/256 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 218 VEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 276
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFI 126
++SAT K V+ LA LKD ++++ ++A N LQ + V ++KL L I
Sbjct: 277 MWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 184
+ +K +VF+ + ++ E +K+R G P M ++G Q R + +F K
Sbjct: 337 MSEKENKTIVFVETKRRCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK- 243
+L TDVASRGLD V +V+ D P YIHR+GRTAR G + F TP +K
Sbjct: 394 ILIATDVASRGLDVED-VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 244 ---MLEKLREAKIPIH 256
++ LREA I+
Sbjct: 453 VSDLISVLREANQAIN 468
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 330 (121.2 bits), Expect = 2.5e-27, P = 2.5e-27
Identities = 90/256 (35%), Positives = 136/256 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 218 VEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 276
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFI 126
++SAT K V+ LA LKD ++++ ++A N LQ + V ++KL L I
Sbjct: 277 MWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 184
+ +K +VF+ + ++ E +K+R G P M ++G Q R + +F K
Sbjct: 337 MSEKENKTIVFVETKRRCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK- 243
+L TDVASRGLD V +V+ D P YIHR+GRTAR G + F TP +K
Sbjct: 394 ILIATDVASRGLDVED-VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 244 ---MLEKLREAKIPIH 256
++ LREA I+
Sbjct: 453 VSDLISVLREANQAIN 468
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 330 (121.2 bits), Expect = 2.5e-27, P = 2.5e-27
Identities = 90/256 (35%), Positives = 136/256 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 218 VEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 276
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFI 126
++SAT K V+ LA LKD ++++ ++A N LQ + V ++KL L I
Sbjct: 277 MWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 184
+ +K +VF+ + ++ E +K+R G P M ++G Q R + +F K
Sbjct: 337 MSEKENKTIVFVETKRRCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK- 243
+L TDVASRGLD V +V+ D P YIHR+GRTAR G + F TP +K
Sbjct: 394 ILIATDVASRGLDVED-VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 244 ---MLEKLREAKIPIH 256
++ LREA I+
Sbjct: 453 VSDLISVLREANQAIN 468
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 330 (121.2 bits), Expect = 2.5e-27, P = 2.5e-27
Identities = 90/256 (35%), Positives = 136/256 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 218 VEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 276
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFI 126
++SAT K V+ LA LKD ++++ ++A N LQ + V ++KL L I
Sbjct: 277 MWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 184
+ +K +VF+ + ++ E +K+R G P M ++G Q R + +F K
Sbjct: 337 MSEKENKTIVFVETKRRCD---ELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAP 393
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK- 243
+L TDVASRGLD V +V+ D P YIHR+GRTAR G + F TP +K
Sbjct: 394 ILIATDVASRGLDVED-VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 244 ---MLEKLREAKIPIH 256
++ LREA I+
Sbjct: 453 VSDLISVLREANQAIN 468
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 330 (121.2 bits), Expect = 2.5e-27, P = 2.5e-27
Identities = 90/256 (35%), Positives = 136/256 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 218 VEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 276
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFI 126
++SAT K V+ LA LKD ++++ ++A N LQ + V ++KL L I
Sbjct: 277 MWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 184
+ +K +VF+ + ++ E +K+R G P M ++G Q R + +F K
Sbjct: 337 MSEKENKTIVFVETKRRCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK- 243
+L TDVASRGLD V +V+ D P YIHR+GRTAR G + F TP +K
Sbjct: 394 ILIATDVASRGLDVED-VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 244 ---MLEKLREAKIPIH 256
++ LREA I+
Sbjct: 453 VSDLISVLREANQAIN 468
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 330 (121.2 bits), Expect = 2.5e-27, P = 2.5e-27
Identities = 90/256 (35%), Positives = 136/256 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 218 VEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 276
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFI 126
++SAT K V+ LA LKD ++++ ++A N LQ + V ++KL L I
Sbjct: 277 MWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 184
+ +K +VF+ + ++ E +K+R G P M ++G Q R + +F K
Sbjct: 337 MSEKENKTIVFVETKRRCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK- 243
+L TDVASRGLD V +V+ D P YIHR+GRTAR G + F TP +K
Sbjct: 394 ILIATDVASRGLDVED-VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 244 ---MLEKLREAKIPIH 256
++ LREA I+
Sbjct: 453 VSDLISVLREANQAIN 468
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 330 (121.2 bits), Expect = 2.5e-27, P = 2.5e-27
Identities = 90/256 (35%), Positives = 136/256 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 218 VEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 276
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFI 126
++SAT K V+ LA LKD ++++ ++A N LQ + V ++KL L I
Sbjct: 277 MWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 184
+ +K +VF+ + ++ E +K+R G P M ++G Q R + +F K
Sbjct: 337 MSEKENKTIVFVETKRRCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK- 243
+L TDVASRGLD V +V+ D P YIHR+GRTAR G + F TP +K
Sbjct: 394 ILIATDVASRGLDVED-VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 244 ---MLEKLREAKIPIH 256
++ LREA I+
Sbjct: 453 VSDLISVLREANQAIN 468
>SGD|S000001894 [details] [associations]
symbol:SPB4 "Putative ATP-dependent RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0000027 "ribosomal
large subunit assembly" evidence=IMP] [GO:0030686 "90S preribosome"
evidence=IDA;IPI] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000470 "maturation of LSU-rRNA" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001894
GO:GO:0005524 GO:GO:0005730 EMBL:D50617 EMBL:BK006940 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030686
GO:GO:0006364 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 GeneTree:ENSGT00550000074969
OMA:MDSSANI OrthoDB:EOG46MFT3 EMBL:X16147 PIR:S14942
RefSeq:NP_116654.1 ProteinModelPortal:P25808 SMR:P25808
DIP:DIP-5423N IntAct:P25808 MINT:MINT-525740 STRING:P25808
PaxDb:P25808 EnsemblFungi:YFL002C GeneID:850549 KEGG:sce:YFL002C
CYGD:YFL002c NextBio:966324 Genevestigator:P25808
GermOnline:YFL002C Uniprot:P25808
Length = 606
Score = 329 (120.9 bits), Expect = 3.2e-27, P = 3.2e-27
Identities = 108/423 (25%), Positives = 200/423 (47%)
Query: 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
N IL+ TPGR+L + + P S ++++DEADR+LD+ F K I+ LPK R+
Sbjct: 140 NRPQILIGTPGRVLDFL-QMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRR 198
Query: 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 126
T LFSAT + D+ + L++P ++V+ ++ P+ L+ +V +KL +L S +
Sbjct: 199 TGLFSATMRSAGSDIFKTGLRNPVRITVNSKN--QAPSSLKLNYCVVNPAEKLQLLVSIL 256
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPG------IPLMCLYGRMKQDRRMAIYAQFC 180
+ K +V+ +C V Y + + L + + L+G+++ R F
Sbjct: 257 NNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFT 316
Query: 181 EK--RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
+ SVLF TDVA+RG+D VD V+Q+D P + ++HR GRT R N G+++ FL
Sbjct: 317 DSLSNSVLFTTDVAARGIDIPD-VDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITFLN 375
Query: 239 P-TEMKMLEKLREAKIPIHFTKANTKRLQP-VSGLLAALLVKYPDMQHRAQKAFITYLRS 296
E + ++ + + K + +++ D + KA++ +++
Sbjct: 376 EGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDFRNWILEDRDRFDKGVKAYVAFIKY 435
Query: 297 VHIQKDKEVFDVTKLSIDEFSASLGL---PMTPKI-RFL-NQKKGKMVPVKPVLDNAEKE 351
+F + L + GL P P+I ++L +K+ + P ++D
Sbjct: 436 YSNHSATSIFRLQSLDYVGIAKLYGLFRLPRMPEITKYLATEKQEGIFPGNWLVDPPVNM 495
Query: 352 DKLMISREKLLPDNF-TEENVDRDILETKDIEDE-GKADLLEDVMRATRVKK-NKKLKIN 408
D+ +K + T +N+ I + K ++ E K +L T+ +K +K K++
Sbjct: 496 DEYKYKDKKREKERQETLKNISL-INDKKKLKSELKKKNLAWSDKTLTKERKLERKEKMS 554
Query: 409 VHR 411
+ R
Sbjct: 555 LKR 557
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 330 (121.2 bits), Expect = 3.3e-27, P = 3.3e-27
Identities = 90/256 (35%), Positives = 136/256 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 275 VEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 333
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFI 126
++SAT K V+ LA LKD ++++ ++A N LQ + V ++KL L I
Sbjct: 334 MWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEI 393
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 184
+ +K +VF+ + ++ E +K+R G P M ++G Q R + +F K
Sbjct: 394 MSEKENKTIVFVETKRRCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 450
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK- 243
+L TDVASRGLD V +V+ D P YIHR+GRTAR G + F TP +K
Sbjct: 451 ILIATDVASRGLDVED-VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 509
Query: 244 ---MLEKLREAKIPIH 256
++ LREA I+
Sbjct: 510 VSDLISVLREANQAIN 525
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 324 (119.1 bits), Expect = 3.4e-27, P = 3.4e-27
Identities = 80/242 (33%), Positives = 131/242 (54%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGRLL H++ + ++LDEAD +L++GF + + +I+S +P QT L
Sbjct: 123 HIIVGTPGRLLDHINRR-TMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLL 181
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT ++ +A + +P+++ V + +T + +QQ + V +K D L +
Sbjct: 182 FSATMPAPIKRIAERFMTNPEHVKVKAKEMTVS--NIQQFYLEVHERKKFDTLTRLLDIQ 239
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
+VF + ++V + EA LR G ++G + Q +RM +F + VL
Sbjct: 240 SPELAIVFGRTKRRVDELTEALN-LR-GYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVA 297
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVA+RGLD + V V D P+D SY+HR+GRT R G ++ F+TP E ML +
Sbjct: 298 TDVAARGLDIS-GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAI 356
Query: 249 RE 250
+
Sbjct: 357 EQ 358
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 331 (121.6 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 81/233 (34%), Positives = 128/233 (54%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I++ TPGR + H+ + +F+ ++IL++DEADR+L+ GF+ LN I+ LP +RQ L
Sbjct: 355 DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLL 414
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD--MLWSFIK 127
FSAT ++ L LSLK P + + AT +L Q + + L +L++ I+
Sbjct: 415 FSATMNSKIKSLVSLSLKKPVRIMIDPPKKAAT--KLTQEFVRIRKRDHLKPALLFNLIR 472
Query: 128 A--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-S 184
K +V + K+ + L G+ + L+G + Q++R+ +F
Sbjct: 473 KLDPTGQKRIVVFVARKETAHRLRIIMGLL-GMSVGELHGSLTQEQRLDSVNKFKNLEVP 531
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 237
VL CTD+ASRGLD K ++ V+ D P+ Y+HRVGRTAR GRSV F+
Sbjct: 532 VLICTDLASRGLDIPK-IEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 583
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 331 (121.6 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 84/248 (33%), Positives = 128/248 (51%)
Query: 2 EKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL 61
E+E +I++ TPGR + HM + F ++I+++DEADR+L+ GF LN I+
Sbjct: 374 EQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQAC 433
Query: 62 PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD- 120
PK RQT LFSAT T V DL RLSL P + V + TA Q+ + P + L
Sbjct: 434 PKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKL-LTQEFVRVRPQRELLRP 492
Query: 121 -MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
ML K + + ++F S K + L + ++G + Q++R+ F
Sbjct: 493 AMLIYLCKELFHRRTIIFFRS-KAFAHKMRVIFGLL-SLNATEIHGSLSQEQRVRALEDF 550
Query: 180 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
+ K + L TDVASRG+D K ++ V+ + P Y+HRVGRTAR GR++
Sbjct: 551 RDGKCNYLLATDVASRGIDI-KGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAG 609
Query: 239 PTEMKMLE 246
+ K+L+
Sbjct: 610 EGDRKVLK 617
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 321 (118.1 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 81/243 (33%), Positives = 132/243 (54%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGR++ H+D D S L +L+LDEADR+L++GF+ L+AI+ Q P+ RQT L
Sbjct: 122 HIIVGTPGRIVDHLDRN-RLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLL 180
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSFIKA 128
FSAT + +Q +A+ + +P + +VT N ++Q + ++ ++ L +
Sbjct: 181 FSATFPEQIQSIAKQIMYNPVMVKA---AVTHEKNTIEQHFYQLDDDKSRMQALQLLLLE 237
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLF 187
H +VF + ++ + V + + L G ++ L+G ++Q R QF K + VL
Sbjct: 238 HKPESAVVFCNTKRETQKVADELEGL--GFSVLALHGDLEQRDRDETLLQFANKSACVLV 295
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEK 247
TDVA+RGLD + A+D V D +IHR+GRT R S G + F + +
Sbjct: 296 ATDVAARGLDID-ALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354
Query: 248 LRE 250
L E
Sbjct: 355 LEE 357
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 321 (118.1 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 81/243 (33%), Positives = 132/243 (54%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGR++ H+D D S L +L+LDEADR+L++GF+ L+AI+ Q P+ RQT L
Sbjct: 122 HIIVGTPGRIVDHLDRN-RLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLL 180
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSFIKA 128
FSAT + +Q +A+ + +P + +VT N ++Q + ++ ++ L +
Sbjct: 181 FSATFPEQIQSIAKQIMYNPVMVKA---AVTHEKNTIEQHFYQLDDDKSRMQALQLLLLE 237
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLF 187
H +VF + ++ + V + + L G ++ L+G ++Q R QF K + VL
Sbjct: 238 HKPESAVVFCNTKRETQKVADELEGL--GFSVLALHGDLEQRDRDETLLQFANKSACVLV 295
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEK 247
TDVA+RGLD + A+D V D +IHR+GRT R S G + F + +
Sbjct: 296 ATDVAARGLDID-ALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354
Query: 248 LRE 250
L E
Sbjct: 355 LEE 357
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 327 (120.2 bits), Expect = 3.9e-27, P = 3.9e-27
Identities = 87/253 (34%), Positives = 134/253 (52%)
Query: 9 LNILVCTPGRLLQHMDE-TPNFD-CSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
++I+V TPGRLL +D T N CS L +LDEADR+LD+GF+ + I+ Q+ RQ
Sbjct: 253 VDIVVATPGRLLDFLDNGTTNMKKCSYL---VLDEADRMLDMGFEPQIKKIIGQIRPDRQ 309
Query: 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP--LEQKLDMLWS 124
T +FSAT K V+ LA KD +L+V + A N Q ++ + KL L +
Sbjct: 310 TLMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMELLN 369
Query: 125 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKR 183
I K ++F+ + ++ + A + R G P +C++G Q R + +F K
Sbjct: 370 HIMNQKECKTIIFVETKRKADELTRAMR--RDGWPTLCIHGDKNQGERDWVLQEFKAGKT 427
Query: 184 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243
++ TDVA+RGLD + + +V+ D P + Y+HR+GRT R + G + F T T
Sbjct: 428 PIMLATDVAARGLDVDD-IKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNAS 486
Query: 244 ----MLEKLREAK 252
+L+ L EAK
Sbjct: 487 KAKDLLKVLDEAK 499
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 314 (115.6 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 82/245 (33%), Positives = 130/245 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ ++V TPGR+L H+ F ++++I+ILDEAD +LD+GF + AI++ L +QT
Sbjct: 120 VEVIVGTPGRILDHIGRK-TFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTL 178
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT ++ + + L Y +V T ++Q +P +K++ L S + +
Sbjct: 179 LFSATLPAPIKTIIKKFLGG--YKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNS 236
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVL 186
L + +VF C+ K V E ++L G L+G M Q R F K +L
Sbjct: 237 ELPIQAIVF---CRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELL 293
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVA+RGLD V V+ D P++ SYIHR+GRT R G+++ + E K+L+
Sbjct: 294 VATDVAARGLDIPD-VSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLK 352
Query: 247 KLREA 251
+ EA
Sbjct: 353 AIEEA 357
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 314 (115.6 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 82/245 (33%), Positives = 130/245 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ ++V TPGR+L H+ F ++++I+ILDEAD +LD+GF + AI++ L +QT
Sbjct: 120 VEVIVGTPGRILDHIGRK-TFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTL 178
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT ++ + + L Y +V T ++Q +P +K++ L S + +
Sbjct: 179 LFSATLPAPIKTIIKKFLGG--YKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNS 236
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVL 186
L + +VF C+ K V E ++L G L+G M Q R F K +L
Sbjct: 237 ELPIQAIVF---CRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELL 293
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVA+RGLD V V+ D P++ SYIHR+GRT R G+++ + E K+L+
Sbjct: 294 VATDVAARGLDIPD-VSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLK 352
Query: 247 KLREA 251
+ EA
Sbjct: 353 AIEEA 357
>TAIR|locus:2064844 [details] [associations]
symbol:AT2G40700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0006406 "mRNA export from
nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0009561 "megagametogenesis" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0042991 "transcription factor
import into nucleus" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
EMBL:AJ010468 IPI:IPI00518934 PIR:G84832 PIR:T51746
RefSeq:NP_181602.1 UniGene:At.47 ProteinModelPortal:Q7XJN0
SMR:Q7XJN0 STRING:Q7XJN0 PaxDb:Q7XJN0 PRIDE:Q7XJN0
EnsemblPlants:AT2G40700.1 GeneID:818665 KEGG:ath:AT2G40700
GeneFarm:934 TAIR:At2g40700 InParanoid:Q7XJN0 OMA:HRFHWIV
PhylomeDB:Q7XJN0 ProtClustDB:CLSN2683635 Genevestigator:Q7XJN0
GermOnline:AT2G40700 Uniprot:Q7XJN0
Length = 609
Score = 209 (78.6 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 42/89 (47%), Positives = 61/89 (68%)
Query: 163 LYGRMKQDRRMAIYAQF-CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRV 221
L+G M+Q+ R + + F EK++VL TDVA+RGLDF K V ++Q DCP + Y+HRV
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPK-VRCIIQYDCPGEATEYVHRV 437
Query: 222 GRTARYNSGGRSVLFLTPTEMKMLEKLRE 250
GRTAR G ++LFL P E+ L++L++
Sbjct: 438 GRTARIGEKGEALLFLQPIEIDYLKELKK 466
Score = 151 (58.2 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 41/105 (39%), Positives = 57/105 (54%)
Query: 2 EKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
EK + + ++IL+ TPGRLL H+ T +F L+ +I DEAD IL++G+ K + I+
Sbjct: 148 EKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKL 207
Query: 61 L--------------PK--HRQTFLFSATQTKSVQDLARLSLKDP 89
L PK +Q L SAT V DLA+LSL DP
Sbjct: 208 LGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDP 252
Score = 63 (27.2 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 272 LAALLVKYPDMQHRAQKAFITYLR--SVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKI 328
L +L P M+ A+ AF++++R + H + K +F V KL + + S L P +
Sbjct: 511 LESLTYAEPKMKSLAKNAFVSWVRGYAAHKGELKSIFVVKKLHLGHVAKSFALREQPSL 569
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 327 (120.2 bits), Expect = 6.1e-27, Sum P(2) = 6.1e-27
Identities = 82/249 (32%), Positives = 133/249 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+++LV PGRLL + + D S ++IL+LDEADR+LD+GF + ++++LP RQ
Sbjct: 130 VDVLVACPGRLLDLAGQG-SVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNL 188
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT +K + DLA L +P+ + V + T R++Q +P K +L I A
Sbjct: 189 LFSATFSKDITDLAGKLLHNPERIEVTPPNTTV--ERIEQRVFRLPASHKRALLAHLITA 246
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVLF 187
++LVF + + E K G+ + ++G Q+ R A F + +L
Sbjct: 247 GAWEQVLVFTRTKHGANRLAEYLDK--HGLSAVAIHGNKSQNARTKALADFKAGEVRILV 304
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML-- 245
TD+A+RGLD ++ + VV + P Y+HR+GRT R G ++ + P E K+L
Sbjct: 305 ATDIAARGLDIDQ-LPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKS 363
Query: 246 -EKLREAKI 253
E++ + KI
Sbjct: 364 IERMTKQKI 372
Score = 39 (18.8 bits), Expect = 6.1e-27, Sum P(2) = 6.1e-27
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 342 KPVLDNAEKEDKLMISREKLLPDNFTEENVD 372
KP +E + R PD F +++VD
Sbjct: 445 KPREGTPAREQRQPTPRADRAPDEFLDDDVD 475
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 320 (117.7 bits), Expect = 6.6e-27, Sum P(2) = 6.6e-27
Identities = 88/273 (32%), Positives = 147/273 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCS---QLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
+++V TPGRL ++ P+ ++Q +LDEADR+L+ + L I + + RQ
Sbjct: 209 HVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEKRQ 268
Query: 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 126
T L SAT T ++ L R+S + P + + +T +RL+Q ++ P+ K L +
Sbjct: 269 TLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVV 328
Query: 127 KAHLN----SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 182
K + S +++F +C++ + + F+ L G + L+ ++ Q +R+A + F K
Sbjct: 329 KNYSEKNPKSSVMIFAQTCRECQALAYMFEGL--GFRVGSLHSQIPQKQRLAALSAFRSK 386
Query: 183 R-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241
V+ CTDVASRGLD VD VV + P+ +YIHRVGR+AR G ++ F+T +
Sbjct: 387 TLQVIICTDVASRGLDIPH-VDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYD 445
Query: 242 MKMLE--------KLREAKI-PIHFTKANTKRL 265
+++L+ KL E K+ P H TK T+ L
Sbjct: 446 VELLQAVEQVIGKKLDELKVSPKHVTKYVTQVL 478
Score = 44 (20.5 bits), Expect = 6.6e-27, Sum P(2) = 6.6e-27
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 348 AEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKK 404
A+KE +L + +K E N +++L + EDE L E MR R+ +K+
Sbjct: 480 AKKEAELKLENQKF--GEKKEINRRKELLMSGMDEDEADRHLEE--MRTRRMTNSKR 532
Score = 43 (20.2 bits), Expect = 8.4e-27, Sum P(2) = 8.4e-27
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 345 LDNAEKEDKLMISREK-LLPDNFTEENVDRDILETK 379
L+N + +K I+R K LL E+ DR + E +
Sbjct: 488 LENQKFGEKKEINRRKELLMSGMDEDEADRHLEEMR 523
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 326 (119.8 bits), Expect = 7.5e-27, P = 7.5e-27
Identities = 89/252 (35%), Positives = 134/252 (53%)
Query: 13 VCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 72
+ TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT ++SA
Sbjct: 222 IATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 280
Query: 73 TQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMI--VPLEQKLDMLWSFIKAHL 130
T K V+ LA LKD ++++ ++A N LQ + V ++KL L I +
Sbjct: 281 TWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEK 340
Query: 131 NSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 188
+K +VF+ + ++ E +K+R G P M ++G Q R + +F K +L
Sbjct: 341 ENKTIVFVETKRRCD---ELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK----M 244
TDVASRGLD V +V+ D P YIHR+GRTAR G + F TP +K +
Sbjct: 398 TDVASRGLDVED-VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDL 456
Query: 245 LEKLREAKIPIH 256
+ LREA I+
Sbjct: 457 ISVLREANQAIN 468
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 328 (120.5 bits), Expect = 8.7e-27, P = 8.7e-27
Identities = 95/275 (34%), Positives = 142/275 (51%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I++ TPGRL+ + E+ + ++ L+LDEADR+LD+GF+ + I+SQ+ RQT
Sbjct: 508 VEIVIATPGRLIDIL-ESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTL 566
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI-K 127
+FSAT K VQ LA L D + + +TA N Q + E+K ML SF+
Sbjct: 567 MFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERML-SFLGS 625
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVL 186
+ K++VF + K V + + G + ++G Q R + +QF ++
Sbjct: 626 VGRDEKVIVFAETRKGVDDLQRVLQF--SGFKSIGIHGNKSQPERDFVLSQFKNGMVPIM 683
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM-- 244
TDVASRGLD K + +VV D P + YIHR+GRTAR + G S LT ++
Sbjct: 684 IATDVASRGLDI-KDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLAN 742
Query: 245 --LEKLREAK--IPIHF--------TKANTKRLQP 267
++ L EAK IPI T +NTK+ P
Sbjct: 743 ELIKVLTEAKQKIPIELSNLSVTPSTSSNTKKFSP 777
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 324 (119.1 bits), Expect = 8.9e-27, P = 8.9e-27
Identities = 78/240 (32%), Positives = 132/240 (55%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ M E + ++ L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 251 VEICIATPGRLID-MLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 309
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
++SAT K VQ L R L DP +++ + A+ + + Q ++ K D L +++
Sbjct: 310 MWSATWPKEVQQLTRDYLNDPIQVTIGSLELAAS-HTITQLVEVIDEFSKRDRLVKHLES 368
Query: 129 HLN---SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 184
LN +KILVF ++ + + + G P + ++G +Q+ R + +F + K S
Sbjct: 369 ALNEKDNKILVFASTKRTCDEITTYLRS--DGWPALAIHGDKEQNERDWVLDEFRKGKTS 426
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244
++ TDVA+RG+D K + V+ D P ++ Y+HR+GRT R + G ++ F T K+
Sbjct: 427 IMVATDVAARGIDV-KGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKL 485
>DICTYBASE|DDB_G0271708 [details] [associations]
symbol:ddx31 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0271708 GO:GO:0005524
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000006
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HSSP:P10081
RefSeq:XP_645498.1 ProteinModelPortal:Q869P0
EnsemblProtists:DDB0234202 GeneID:8618126 KEGG:ddi:DDB_G0271708
OMA:THIQEAS Uniprot:Q869P0
Length = 908
Score = 192 (72.6 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 158 IPLMCLYGRMKQDRRMAIYAQFCEK-RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVAS 216
+P+ L+G + Q R + F +L TDV++RGLD +V+W+VQ D D
Sbjct: 604 VPIFKLHGELDQQTRTKTFFDFKNSPNGILLTTDVSARGLDL-PSVNWIVQYDPCSDTKD 662
Query: 217 YIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANT 262
YIHR+GRTAR + G S+LFL P+E K ++ L + + + K T
Sbjct: 663 YIHRIGRTARLGNQGCSLLFLLPSEKKYIDHLAKFNVSVKEMKVTT 708
Score = 187 (70.9 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 49/148 (33%), Positives = 79/148 (53%)
Query: 2 EKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
EK + + +NILV TPGRLL H+ T +F ++ ILDEAD++LD+GF+K + I++
Sbjct: 324 EKARIRKGINILVATPGRLLDHLQNTQSFPTDNIKWCILDEADKLLDLGFEKDVTTIINL 383
Query: 61 LPKH-------RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAM-I 112
L RQ L SAT ++ + LA LSL P Y+ + + + N Q +
Sbjct: 384 LDSKKRTMKFKRQNILVSATLSEGISRLASLSLTSPVYIGLDSKVLEKGENPFQAAEKEM 443
Query: 113 VPLEQKLDMLWSFI--KAHLNSKILVFL 138
+ ++LD + + K L S ++ F+
Sbjct: 444 LQAPKQLDQFYVEVESKERLTS-LIAFI 470
Score = 62 (26.9 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 65 RQTFLFSATQTKSVQDLARLSLKDPQYLSVH--------------EESVTATPNRLQQTA 110
RQ L SAT ++ + LA LSL P Y+ + E+ + P +L Q
Sbjct: 395 RQNILVSATLSEGISRLASLSLTSPVYIGLDSKVLEKGENPFQAAEKEMLQAPKQLDQFY 454
Query: 111 MIVPLEQKLDMLWSFIK 127
+ V +++L L +FI+
Sbjct: 455 VEVESKERLTSLIAFIR 471
Score = 54 (24.1 bits), Expect = 1.7e-12, Sum P(3) = 1.7e-12
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCT 189
NSK++VF +SC V + F ++ + +Q ++ + Q +K S +F T
Sbjct: 492 NSKMIVFFSSCDSVDFHHYMFSNMKMDKERGVKRTKKEQIKQDKLIQQHKQKNSKIFQT 550
Score = 50 (22.7 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 271 LLAALLVKYPDMQHRAQKAFITYLRSVHIQK-D-KEVFDVTKLSIDEFSASLGLPMTP 326
L L+ + A+ A+ ++LRS K D K +F ++ L + S S L TP
Sbjct: 740 LFERFLIYDSKAKEMARCAYQSFLRSYATHKADVKSIFHISYLHLGHVSKSFALRETP 797
Score = 47 (21.6 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 9/38 (23%), Positives = 23/38 (60%)
Query: 509 MERGRRKKAKIY-FDSDSDNDNDERKQNKDDNGPNIDS 545
+++ ++K +KI+ ++SD++ + + D + N DS
Sbjct: 537 IQQHKQKNSKIFQTGNESDDEESDNDDSDDSDSNNSDS 574
Score = 42 (19.8 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 330 FLNQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKAD 388
F N K K VK K+DKL+ ++ F N D E D +D +D
Sbjct: 512 FSNMKMDKERGVKRTKKEQIKQDKLIQQHKQKNSKIFQTGNESDD--EESDNDDSDDSD 568
Score = 40 (19.1 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 522 DSDSDNDNDERKQNKD 537
DSDS+N + E + K+
Sbjct: 566 DSDSNNSDSETDEEKE 581
Score = 38 (18.4 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 522 DSDSDNDNDERKQNKD-DNGPN 542
DS++D + + KQ K+ + PN
Sbjct: 573 DSETDEEKEIEKQIKEATSNPN 594
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 324 (119.1 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 88/255 (34%), Positives = 134/255 (52%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 206 VEICIATPGRLIDFL-EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 264
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFI 126
++SAT K V+ LA LK+ ++++ ++A N LQ + +E+ KL L I
Sbjct: 265 MWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEI 324
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
+ +K +VF+ + ++ + K R G P M ++G Q R + +F K +
Sbjct: 325 MSEKENKTIVFVETKRRCDDLTR--KMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPI 382
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK-- 243
L TDVASRGLD V +V+ D P YIHR+GRTAR G + F TP +K
Sbjct: 383 LIATDVASRGLDVED-VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 441
Query: 244 --MLEKLREAKIPIH 256
++ LREA I+
Sbjct: 442 NDLISVLREANQAIN 456
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 325 (119.5 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 83/243 (34%), Positives = 128/243 (52%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGR+ E+ + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 216 VEICIATPGRI--DFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 273
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFI 126
++SAT K V+ LA L+D ++V ++A N LQ + + E+ KL L I
Sbjct: 274 MWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEI 333
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
A +K ++F+ + ++ + + R G P MC++G Q R + +F K +
Sbjct: 334 MAEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMCIHGDKSQPERDWVLNEFRSGKAPI 391
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVASRGLD V +V+ D P Y+HR+GRTAR + G + F TP +K
Sbjct: 392 LIATDVASRGLDVED-VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 450
Query: 246 EKL 248
+L
Sbjct: 451 REL 453
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 324 (119.1 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 88/255 (34%), Positives = 134/255 (52%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 214 VEICIATPGRLIDFL-EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 272
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFI 126
++SAT K V+ LA LK+ ++++ ++A N LQ + +E+ KL L I
Sbjct: 273 MWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEI 332
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
+ +K +VF+ + ++ + K R G P M ++G Q R + +F K +
Sbjct: 333 MSEKENKTIVFVETKRRCDDLTR--KMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPI 390
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK-- 243
L TDVASRGLD V +V+ D P YIHR+GRTAR G + F TP +K
Sbjct: 391 LIATDVASRGLDVED-VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 449
Query: 244 --MLEKLREAKIPIH 256
++ LREA I+
Sbjct: 450 NDLISVLREANQAIN 464
>ASPGD|ASPL0000028276 [details] [associations]
symbol:AN5623 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001305
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268799
ProteinModelPortal:C8VFX5 EnsemblFungi:CADANIAT00003447 OMA:STIGKMG
Uniprot:C8VFX5
Length = 567
Score = 323 (118.8 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 96/296 (32%), Positives = 149/296 (50%)
Query: 10 NILVCTPGRLLQHMDETPNFD-CSQLQILILDEADRILDVGFKKALNAIVSQLPKHR--- 65
+ILV TPGRL ++ E+ + +Q L+LDEAD +L+ GF + I+ +P
Sbjct: 140 SILVATPGRLKDYLSESETAEKLKDIQTLVLDEADTMLETGFLADVKQILKLIPSKSTGW 199
Query: 66 QTFLFSATQTKSVQDLARLSLKDPQYLSVH--EESVTATPNRLQQTAMIVPLEQKLDMLW 123
Q FSAT V+D+ + L +P Y S+ +++ T R+ Q +++P +
Sbjct: 200 QGMCFSATLPPKVKDVVSVVL-NPGYTSISTVDKNEPPTHERVPQYYVLMPSVAETFTTL 258
Query: 124 SFIKAH---LNSKILVFLTSCKQVKYVFEAFKK-LRPGIPLMCLYGRMKQDRRMAIYAQF 179
S + AH N+KI+VF + V AF L P + + ++ R+ Q R +QF
Sbjct: 259 SSLLAHESKKNTKIIVFGVTANMVALSHSAFANGLTP-LKVFEIHSRLSQSARTRTTSQF 317
Query: 180 CEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
E + +LF +DV RG+DF VD VVQV P + Y+HRVGRTAR + GR+V+ LT
Sbjct: 318 KEADAGILFASDVIGRGMDFPN-VDLVVQVGLPSNAEQYVHRVGRTARAGNDGRAVILLT 376
Query: 239 PTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYL 294
+E L+ R I H A++ S A Y + Q+A+ +Y+
Sbjct: 377 ESESFFLKANRHLPIQPH-PDASSILANATSCSPAVTQAMYAVDETTKQRAYSSYI 431
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 303 (111.7 bits), Expect = 1.7e-26, P = 1.7e-26
Identities = 81/240 (33%), Positives = 128/240 (53%)
Query: 9 LNILVCTPGRLLQHMDETP-NFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQT 67
++ILV TPGRLL + +FD +L +L+LDEADR+LD+GF +N I+ +LP+HRQ
Sbjct: 129 VDILVATPGRLLDMTHQRVLHFD--ELDMLVLDEADRMLDMGFIDDINKIIERLPEHRQN 186
Query: 68 FLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK 127
LFSAT ++ V+ LA+ ++ P +S+ + A+ +++Q + V K +L I
Sbjct: 187 LLFSATMSEEVRGLAKRTIHKPVEISIGADK--ASKPKIEQWLVTVDKANKSALLSHIIT 244
Query: 128 AHLNSKILVFL-TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 185
+ L+F+ T K V + K+ GI ++ QD R I F K
Sbjct: 245 TQNWQQALIFIETKHGAAKLVSQLEKR---GIVAESIHSGRAQDIREKILNDFKSGKIKF 301
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L T +A+RGLD + + V+ D P V YIHR+GRT R + G ++ ++ + L
Sbjct: 302 LVATAIAARGLDIGE-LSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDNFREL 360
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 316 (116.3 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 82/259 (31%), Positives = 139/259 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGR+ QH+ + + L L+LDEADR+LD+GF A+ I+ + P RQT L
Sbjct: 127 HIIVGTPGRIQQHLRKG-SLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPSRRQTLL 185
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT ++ LA ++DPQ +V E+ +++Q + E+++ + +
Sbjct: 186 FSATYPVGIKQLASKFMRDPQ--TVKAEAFH-DDTQIEQRFYEISPEERMSAVTKVLHHF 242
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
+ + F + +QV+ + GI + L+G ++Q R + A F + SVL
Sbjct: 243 RPASCVAFCFTKQQVQETVDHLTA--KGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 300
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVA+RGLD + A+D V+ V+ D +IHRVGRT R G +V + P+E + +
Sbjct: 301 TDVAARGLDID-ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAI 359
Query: 249 REA-KIPIHFTKANTKRLQ 266
+ K P+++ + + + Q
Sbjct: 360 EQLQKAPLNWDQVDNLKSQ 378
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 315 (115.9 bits), Expect = 2.3e-26, P = 2.3e-26
Identities = 80/244 (32%), Positives = 135/244 (55%)
Query: 1 MEKEHVNEL-NILVCTPGRLLQHMDE-TPNFDCSQLQILILDEADRILDVGFKKALNAIV 58
M+++ + +I+V TPGRLL H+ + T + D L L++DEADR+LD+GF A++ ++
Sbjct: 114 MQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDA--LNTLVMDEADRMLDMGFSDAIDDVI 171
Query: 59 SQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 118
P RQT LFSAT +++ ++ +DP L++ +S A P ++Q + K
Sbjct: 172 RFAPASRQTLLFSATWPEAIAAISGRVQRDP--LAIEIDSTDALPP-IEQQFYETSSKGK 228
Query: 119 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQ 178
+ +L + H S +VF + K + V +A ++ G + L+G ++Q R +
Sbjct: 229 IPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEV--GQSALSLHGDLEQRDRDQTLVR 286
Query: 179 FCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 237
F + VL TDVA+RGLD K+++ VV + D ++HR+GRTAR + G ++ F
Sbjct: 287 FANGSARVLVATDVAARGLDI-KSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFC 345
Query: 238 TPTE 241
P E
Sbjct: 346 APEE 349
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 313 (115.2 bits), Expect = 2.3e-26, P = 2.3e-26
Identities = 77/265 (29%), Positives = 143/265 (53%)
Query: 2 EKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
+K + E +++V TPGRL+ ++ + + ++++L++DEADR+ D+GF L I+ +
Sbjct: 117 QKNALKEGADVVVGTPGRLIDYLKQKV-YSLKEIEMLVIDEADRMFDMGFIADLRFILRR 175
Query: 61 LPKH--RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 118
LP + RQ +FSAT + V +LA + P+ ++V E +TA R++Q V ++K
Sbjct: 176 LPPYDKRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTA--ERVEQVLYHVGRKEK 233
Query: 119 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQ 178
+L ++ + ++F+ + ++ +++ E P + G ++Q +R+ I
Sbjct: 234 FPLLLGLLRKEGMERTMIFVNTKREAEFLDERLNA--NDFPCRVISGDVEQRKRLKILED 291
Query: 179 FCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 237
F K ++ TDVASRGL + V V+ D P+D Y+HR+GRTAR + G+++
Sbjct: 292 FKSGKLPIMIATDVASRGLHID-GVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMA 350
Query: 238 TPTEMKMLEKLREA---KIPIHFTK 259
LE + E KIP+ + +
Sbjct: 351 DEDGAFHLEAIHEYIKDKIPVEWAE 375
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 314 (115.6 bits), Expect = 3.0e-26, P = 3.0e-26
Identities = 80/251 (31%), Positives = 136/251 (54%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
++ILV TPGRL + + N D S + L++DEADR+LD+GF + + + + QT
Sbjct: 123 VDILVATPGRLFDIIGQF-NLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTM 181
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT + +V+ L+ L PQ+++V E + +T ++Q V +K ++L +
Sbjct: 182 LFSATYSDAVKQLSHKMLNQPQWVNVAENTTAST---VEQLVYRVDKRRKAELLSELVGR 238
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVLF 187
+ ++LVF ++ + +++ + GI +G Q R + F K VL
Sbjct: 239 NNWRQVLVFASTKECAEHLLQELTL--DGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 296
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML-- 245
TDVA+RGLD +A+ V+ ++ P Y+HR+GRT R GR++ F++P + +ML
Sbjct: 297 ATDVAARGLDI-QALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAE 355
Query: 246 -EKLREAKIPI 255
E L K+P+
Sbjct: 356 IEALIGEKLPV 366
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 314 (115.6 bits), Expect = 3.0e-26, P = 3.0e-26
Identities = 80/251 (31%), Positives = 136/251 (54%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
++ILV TPGRL + + N D S + L++DEADR+LD+GF + + + + QT
Sbjct: 123 VDILVATPGRLFDIIGQF-NLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTM 181
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT + +V+ L+ L PQ+++V E + +T ++Q V +K ++L +
Sbjct: 182 LFSATYSDAVKQLSHKMLNQPQWVNVAENTTAST---VEQLVYRVDKRRKAELLSELVGR 238
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVLF 187
+ ++LVF ++ + +++ + GI +G Q R + F K VL
Sbjct: 239 NNWRQVLVFASTKECAEHLLQELTL--DGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 296
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML-- 245
TDVA+RGLD +A+ V+ ++ P Y+HR+GRT R GR++ F++P + +ML
Sbjct: 297 ATDVAARGLDI-QALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAE 355
Query: 246 -EKLREAKIPI 255
E L K+P+
Sbjct: 356 IEALIGEKLPV 366
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 319 (117.4 bits), Expect = 3.5e-26, P = 3.5e-26
Identities = 87/265 (32%), Positives = 142/265 (53%)
Query: 11 ILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70
++V TPGR++ H+ E D S++ L+LDEAD +L +GF + I+S+ P+++Q LF
Sbjct: 135 VVVGTPGRMIDHL-ERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193
Query: 71 SATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL 130
SAT +++ L+ L DP V ++ TA + Q+ + + +K+D L ++
Sbjct: 194 SATMPPAIRKLSAKYLHDP--FEVTCKAKTAVAENISQS--YIQVARKMDALTRVLEVEP 249
Query: 131 NSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQ-DRRMAIYAQFCEKRSVLFC 188
++VF+ + KQ E +KLR G + G + Q R I A +L
Sbjct: 250 FEAMIVFVRT-KQATE--EIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM---KML 245
TDVA+RGLD + + V+ D P D SY+HR+GRT R G +++F++P E+ K +
Sbjct: 307 TDVAARGLDVER-ISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365
Query: 246 EK-----LREAKIPIHFTKANTKRL 265
EK L EA++P NT+R+
Sbjct: 366 EKATRQTLTEAQLPT-VEDVNTQRV 389
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 315 (115.9 bits), Expect = 3.7e-26, P = 3.7e-26
Identities = 85/288 (29%), Positives = 151/288 (52%)
Query: 2 EKEHVNELNILVCTPGRLLQ-HMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
+K + +++LV TPGRLL + FD ++ +L+LDEADR+LD+GF + +N I+ +
Sbjct: 117 KKRLIEGVDLLVATPGRLLDMYTQRAIRFD--EVSVLVLDEADRMLDMGFIEDINNIIEK 174
Query: 61 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 120
LP+ RQ LFSAT +K V+ LA+ ++ D + + ++ +T ++ Q V ++K
Sbjct: 175 LPEQRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAAST--QIDQWLTTVDKDRKSA 232
Query: 121 MLWSFIKAHLNSKILVFL-TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
+L IK + ++ L+F+ T K V + K+ GI + Q R + F
Sbjct: 233 LLSHLIKENNWAQALIFIQTKHGAAKLVSQLEKR---GIVAEAFHSGRSQAIREQLLIDF 289
Query: 180 -CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
K L T V SRG+D + A++ V+ D P++ YIHR+GRT R + G ++ F++
Sbjct: 290 KAGKVPFLVATGVVSRGIDID-ALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVS 348
Query: 239 PTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRA 286
+ + L + E ++ + N + +P + ++L P R+
Sbjct: 349 KDDFRNLCAI-ERRLGHIIERKNIEGFEPKKAVPISILDFVPKSASRS 395
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 315 (115.9 bits), Expect = 3.7e-26, P = 3.7e-26
Identities = 85/288 (29%), Positives = 151/288 (52%)
Query: 2 EKEHVNELNILVCTPGRLLQ-HMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
+K + +++LV TPGRLL + FD ++ +L+LDEADR+LD+GF + +N I+ +
Sbjct: 117 KKRLIEGVDLLVATPGRLLDMYTQRAIRFD--EVSVLVLDEADRMLDMGFIEDINNIIEK 174
Query: 61 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 120
LP+ RQ LFSAT +K V+ LA+ ++ D + + ++ +T ++ Q V ++K
Sbjct: 175 LPEQRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAAST--QIDQWLTTVDKDRKSA 232
Query: 121 MLWSFIKAHLNSKILVFL-TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
+L IK + ++ L+F+ T K V + K+ GI + Q R + F
Sbjct: 233 LLSHLIKENNWAQALIFIQTKHGAAKLVSQLEKR---GIVAEAFHSGRSQAIREQLLIDF 289
Query: 180 -CEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
K L T V SRG+D + A++ V+ D P++ YIHR+GRT R + G ++ F++
Sbjct: 290 KAGKVPFLVATGVVSRGIDID-ALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVS 348
Query: 239 PTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRA 286
+ + L + E ++ + N + +P + ++L P R+
Sbjct: 349 KDDFRNLCAI-ERRLGHIIERKNIEGFEPKKAVPISILDFVPKSASRS 395
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 317 (116.6 bits), Expect = 5.5e-26, P = 5.5e-26
Identities = 84/250 (33%), Positives = 132/250 (52%)
Query: 3 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 62
++ + + I + TPGRLL +D + ++ L+LDEADR+LD+GF+ + IV Q+
Sbjct: 240 RDLIRGVEICIATPGRLLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 298
Query: 63 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 122
RQT +FSAT K VQ LAR L D ++V + A+ N ++Q +V K L
Sbjct: 299 PDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHN-IKQIVEVVDNADKRARL 357
Query: 123 WSFIKAHL---NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
I+ L ++K+L+F T K+V F + + G P + ++G QD R + +F
Sbjct: 358 GKDIEEVLKDRDNKVLIF-TGTKRVADDITRFLR-QDGWPALAIHGDKAQDERDWVLNEF 415
Query: 180 CEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
+S ++ TDVASRG+D K + V D P + Y+HR+GRT R + G + + T
Sbjct: 416 RTGKSPIMVATDVASRGIDV-KGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFT 474
Query: 239 PTEMKMLEKL 248
K +L
Sbjct: 475 SDNAKQAREL 484
>FB|FBgn0027602 [details] [associations]
symbol:CG8611 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806
GeneTree:ENSGT00550000075041 EMBL:AF145609 RefSeq:NP_573214.1
RefSeq:NP_788922.1 UniGene:Dm.3172 ProteinModelPortal:Q86B47
SMR:Q86B47 IntAct:Q86B47 MINT:MINT-776497 PaxDb:Q86B47 PRIDE:Q86B47
EnsemblMetazoa:FBtr0074440 GeneID:32725 KEGG:dme:Dmel_CG8611
UCSC:CG8611-RB FlyBase:FBgn0027602 InParanoid:Q86B47 OMA:YTERDPE
OrthoDB:EOG47SQVT PhylomeDB:Q86B47 GenomeRNAi:32725 NextBio:780053
Bgee:Q86B47 Uniprot:Q86B47
Length = 975
Score = 193 (73.0 bits), Expect = 5.8e-26, Sum P(3) = 5.8e-26
Identities = 45/112 (40%), Positives = 69/112 (61%)
Query: 2 EKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
EK + + +NIL+ TPGRL+ H+ T +F ++LQ LILDEADR+L++G+++ + +V
Sbjct: 446 EKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEA 505
Query: 61 LPKHR-----------QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTA 101
+ K R Q L SAT T VQ LA L+LK+P Y+ +E+ +A
Sbjct: 506 IDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSDEAASA 557
Score = 179 (68.1 bits), Expect = 5.8e-26, Sum P(3) = 5.8e-26
Identities = 42/103 (40%), Positives = 58/103 (56%)
Query: 154 LRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPE 212
L G+ L+G M Q R ++ F + S VL TDV RG+D + VVQ P+
Sbjct: 675 LLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPD-IKLVVQYTPPQ 733
Query: 213 DVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPI 255
A ++HRVGRTAR GR+VLFLTP+E + + L + +I I
Sbjct: 734 TTADFVHRVGRTARAGRKGRAVLFLTPSEAQFVRHLEKKRIRI 776
Score = 51 (23.0 bits), Expect = 5.8e-26, Sum P(3) = 5.8e-26
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 92 LSVHEESVTAT---PNRLQQTAMIVPLEQKLDMLWSFIKAHLNS-----KILVFLTSCKQ 143
L ++E VT P LQ + ++VP + +L L S + +++ K +VF+++ +
Sbjct: 580 LGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEM 639
Query: 144 VKY 146
V +
Sbjct: 640 VNF 642
Score = 41 (19.5 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 364 DNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLV 418
D + +E ++ +LE D+G + EDV + +N +L V P RLV
Sbjct: 563 DGYQKETIEA-LLEV----DDGLGEYQEDVTGVLSIPENLQLSYVVVPPK-LRLV 611
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 314 (115.6 bits), Expect = 7.5e-26, P = 7.5e-26
Identities = 81/244 (33%), Positives = 136/244 (55%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I++ TPGRL+ M E+ N + ++ L+LDEADR+LD+GF + IVS + RQT
Sbjct: 223 VEIVIATPGRLIDMM-ESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTL 281
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNR-LQQTAMIVPLEQKLDMLWSFIK 127
+SAT K V+ L++ L +P + + + A NR ++Q ++ QK + L ++
Sbjct: 282 YWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKA--NRAIRQIVDVISESQKYNKLVKLLE 339
Query: 128 AHLN-SKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRS- 184
++ S+ILVFL + K + ++LR G P + ++G Q R + ++F +S
Sbjct: 340 DIMDGSRILVFLDTKKGCDQIT---RQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSP 396
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244
++ TDVA+RGLD K V +V+ D P + Y+HR+GRT R + G + F T +
Sbjct: 397 IMTATDVAARGLDV-KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARF 455
Query: 245 LEKL 248
++L
Sbjct: 456 AKEL 459
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 318 (117.0 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 84/252 (33%), Positives = 137/252 (54%)
Query: 2 EKEHVNE--LNILVCTPGRLLQHMDETP-NFD-CSQLQILILDEADRILDVGFKKALNAI 57
E+EH+ + +++++ TPGRLL +++ NF C L LDEADR++D+GF+ + ++
Sbjct: 347 EQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLG---LDEADRLIDLGFEDDIRSV 403
Query: 58 VSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ 117
+ RQT LFSAT K +Q+ AR +L P ++V A N Q+ + P E
Sbjct: 404 LDNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGA-ANLNVTQEVEFVKP-EA 461
Query: 118 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYA 177
K+ L ++ +L+F + K V ++E L + + ++G QD R +
Sbjct: 462 KIVYLLECLQK-TPPPVLIFCENKKDVDDIYEYL--LLKQVEAVSIHGDKSQDERESAIK 518
Query: 178 QFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 236
F E K+ VL TDVAS+GLDF + + V+ D P ++ +YIHR+GRT R + G + F
Sbjct: 519 AFREGKKDVLVATDVASKGLDFPE-IQHVINFDMPREIENYIHRIGRTGRRGNKGVATTF 577
Query: 237 LTP--TEMKMLE 246
+ TE +L+
Sbjct: 578 INKNNTESLLLD 589
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 317 (116.6 bits), Expect = 8.6e-26, P = 8.6e-26
Identities = 88/255 (34%), Positives = 132/255 (51%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ I + TPGRL+ + E + + L+LDEADR+LD+GF+ + IV Q+ RQT
Sbjct: 220 VEICIATPGRLIDFL-EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 278
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP--LEQKLDMLWSFI 126
++SAT K V+ LA LK+ ++V ++A N LQ + E KL L I
Sbjct: 279 MWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEI 338
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSV 185
+ +K ++F+ + ++ + + R G P M ++G Q R + +F K +
Sbjct: 339 MSEKENKTIIFVETKRRCDDLTRRMR--RDGWPAMGIHGDKNQQERDWVLNEFKYGKAPI 396
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK-- 243
L TDVASRGLD V +V+ D P + YIHR+GRTAR G + F TP MK
Sbjct: 397 LIATDVASRGLDVED-VKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQA 455
Query: 244 --MLEKLREAKIPIH 256
++ LREA I+
Sbjct: 456 HDLVSVLREANQAIN 470
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 319 (117.4 bits), Expect = 9.5e-26, P = 9.5e-26
Identities = 86/243 (35%), Positives = 132/243 (54%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I++ TPGRL+ H+ TP+F +++LILDEADR+LD F + + I++ K RQT L
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD---MLWSFI 126
FSAT ++ V+DLA +SL P + V+ A L+Q + + +++ D +L S I
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAF--NLRQEFIRIREDKEGDREPILASLI 398
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SV 185
+ +VF+ + KQ + L G+ L+G + Q +R+ +F E++ V
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLL--GVRAGELHGNLTQQQRLESLKKFKEEQIDV 456
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVA+RGLD V V+ P YIHRVGRTAR G SV E K++
Sbjct: 457 LIATDVAARGLDI-VGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIV 515
Query: 246 EKL 248
+ +
Sbjct: 516 KDI 518
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 311 (114.5 bits), Expect = 9.6e-26, P = 9.6e-26
Identities = 90/283 (31%), Positives = 150/283 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+++LV TPGRLL ++ SQL++ ILDEADR+LD+GF + + +++ LPK RQ
Sbjct: 131 VDVLVATPGRLLDLYNQRA-VKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQNL 189
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT + ++ LA+ + +P +SV E+ TA ++ Q V ++K +L IK
Sbjct: 190 LFSATFSPEIRALAKGMVNNPLEISVDAENSTA--EKVTQWLTAVDKKRKPAVLTHLIKE 247
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCEKR-SVL 186
+ ++LVF T K + K L G+ ++G Q R A F + +L
Sbjct: 248 NNWQQVLVF-TKTKHGAN--KLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKIL 304
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TD+A+RG+D + + VV D P Y+HR+GRTAR + G+++ + E+ +L
Sbjct: 305 VATDIAARGIDID-LLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLW 363
Query: 247 KLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKA 289
+ E I H + ++ P + L + ++K P Q + K+
Sbjct: 364 GI-EHVIQQHIERKVIEKFIPANELGESRVIK-PLKQGKPPKS 404
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 310 (114.2 bits), Expect = 1.2e-25, P = 1.2e-25
Identities = 85/249 (34%), Positives = 132/249 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+ILV TPGRL+ M++ +++ LILDEAD++LD+GF AL AI +P RQT
Sbjct: 132 HILVATPGRLIDLMEQRA-VSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTLF 190
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK-A 128
FSAT K+V+ LA L++P +SV + TA R++Q V +K +L I+
Sbjct: 191 FSATMPKAVESLAATFLRNPAEVSVAPPATTA--GRIEQRVCFVEQPEKASLLIEKIRDP 248
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLF 187
L S I VF + V + K I + ++G Q +R F R +L
Sbjct: 249 ELRSAI-VFTRTKHGADGVVKRLAKA--DIDSVAIHGNKSQSQREKALEAFKAGRVPILV 305
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE---MKM 244
TD+A+RG+ + A+ V+ D P+ ++HR+GRTAR + G ++ F + E ++
Sbjct: 306 ATDIAARGIHVD-ALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTLRA 364
Query: 245 LEKLREAKI 253
+EKL K+
Sbjct: 365 IEKLTGLKL 373
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 308 (113.5 bits), Expect = 1.6e-25, P = 1.6e-25
Identities = 83/267 (31%), Positives = 142/267 (53%)
Query: 10 NILVCTPGRLLQHMDETP-NFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ILV TPGRL+ ++ FD QL+IL+LDEADR+LD+GF + ++ I+ LP+ RQ
Sbjct: 125 DILVATPGRLMDLYNQNAVKFD--QLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT + +++LA+ + +P +SV + TA ++Q +++K DML +K
Sbjct: 183 LFSATFSTEIRELAKGLVNNPVEISVSPANSTA--RTVEQCIYPADVKKKPDMLVKLVKE 240
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVLF 187
++LVF+ + + + G+ ++G Q R A F + +L
Sbjct: 241 GNWQQVLVFMRTKHGANRLATYLNE--QGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML-- 245
TD+A+RG+D + + VV + P+ Y+HR+GRT R G+++ ++ E L
Sbjct: 299 ATDIAARGIDIPQ-LPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357
Query: 246 -EKLREAKIPIHFTKANTKRLQPVSGL 271
E+L +A +P + N +P + L
Sbjct: 358 IERLTQALLP----RVNLAGFEPTNQL 380
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 308 (113.5 bits), Expect = 1.6e-25, P = 1.6e-25
Identities = 83/267 (31%), Positives = 142/267 (53%)
Query: 10 NILVCTPGRLLQHMDETP-NFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ILV TPGRL+ ++ FD QL+IL+LDEADR+LD+GF + ++ I+ LP+ RQ
Sbjct: 125 DILVATPGRLMDLYNQNAVKFD--QLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT + +++LA+ + +P +SV + TA ++Q +++K DML +K
Sbjct: 183 LFSATFSTEIRELAKGLVNNPVEISVSPANSTA--RTVEQCIYPADVKKKPDMLVKLVKE 240
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVLF 187
++LVF+ + + + G+ ++G Q R A F + +L
Sbjct: 241 GNWQQVLVFMRTKHGANRLATYLNE--QGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML-- 245
TD+A+RG+D + + VV + P+ Y+HR+GRT R G+++ ++ E L
Sbjct: 299 ATDIAARGIDIPQ-LPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357
Query: 246 -EKLREAKIPIHFTKANTKRLQPVSGL 271
E+L +A +P + N +P + L
Sbjct: 358 IERLTQALLP----RVNLAGFEPTNQL 380
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 313 (115.2 bits), Expect = 1.6e-25, P = 1.6e-25
Identities = 87/260 (33%), Positives = 139/260 (53%)
Query: 11 ILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70
I++ TPGRL+ M E + ++ L+LDEADR+LD+GF+ + IV Q+ RQT ++
Sbjct: 239 IVIATPGRLID-MLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 297
Query: 71 SATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL 130
SAT K V+ LA L DP + V ++A+ N + Q +V +K D L +++
Sbjct: 298 SATWPKEVKQLAADYLNDPIQVQVGSLELSASHN-ITQIVEVVSDFEKRDRLNKYLETAS 356
Query: 131 NS---KILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCEKRS-V 185
K L+F S K++ + K LR G P + ++G Q R + +F RS +
Sbjct: 357 QDNEYKTLIF-ASTKRM--CDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPI 413
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM--- 242
+ TDVA+RG+D K +++V+ D P ++ Y+HR+GRT R + G ++ F T
Sbjct: 414 MVATDVAARGIDV-KGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLG 472
Query: 243 -KMLEKLREAK--IPIHFTK 259
K++ +REA IP K
Sbjct: 473 AKLISIMREANQNIPPELLK 492
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 316 (116.3 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 86/262 (32%), Positives = 139/262 (53%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGRLL + E N + + +++DEADR+LD+GF+K L I++Q+ K++Q
Sbjct: 479 DIIVATPGRLLDFL-ENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLF 537
Query: 70 FSATQTKSVQDLAR-LSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
+AT + V+ LA DP + + + +TA N Q + ++ K +L ++K
Sbjct: 538 LTATWPEQVRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLL-DWLKE 596
Query: 129 HL-NSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKR-SV 185
+ N+KIL+F C + K+LR + ++G +Q R I + R ++
Sbjct: 597 NYENNKILIF---CDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNI 653
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVASRGLD K + V+ D P + YIHR+GRT R G+S+LF + + M
Sbjct: 654 LVATDVASRGLDI-KNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFS-YDYYMP 711
Query: 246 EKLREAKIPIHFTKANTKRLQP 267
+KL+ AK I + + P
Sbjct: 712 QKLKFAKELIKLLNKTNQTVPP 733
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 313 (115.2 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 84/247 (34%), Positives = 130/247 (52%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
++I+V TPGRL+ +D+ + L +DEADR++D+GF++ + I S RQT
Sbjct: 310 VHIVVATPGRLMDMLDKKI-LTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTL 368
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT K +Q+ AR +L P ++V A+ N QQ V E K+ L ++
Sbjct: 369 LFSATMPKKIQNFARSALVKPVTINVGRAGA-ASMNVTQQVEY-VKQEAKVVYLLDCLQK 426
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRM-AIYAQFCEKRSVLF 187
+L+F + V + E L G+ + ++G Q+ R A+ A K+ VL
Sbjct: 427 TA-PPVLIFAEKKQDVDCIHEYL--LLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLV 483
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT-EMKMLE 246
TDVAS+GLDF V V+ D P+D+ +Y+HR+GRT R N+ G + + T E +L
Sbjct: 484 ATDVASKGLDFPN-VQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLL 542
Query: 247 KLREAKI 253
L+ I
Sbjct: 543 DLKHLLI 549
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 301 (111.0 bits), Expect = 3.2e-25, P = 3.2e-25
Identities = 76/243 (31%), Positives = 130/243 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
++ILV TPGRL++++D+ F + ILI+DEADR+LD+GF + AI + +Q
Sbjct: 124 IDILVATPGRLMEYLDKG-KFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNM 182
Query: 69 LFSAT-QTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLWSFI 126
LFSAT + V AR L DP + + ++ ++ Q + + K +L +
Sbjct: 183 LFSATLEGSGVIRFAREVLNDP--IEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLL 240
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SV 185
K + +VF+ + + V E + L+ GIP + G M+Q +R ++F + +V
Sbjct: 241 KQEDVKRAIVFVKT-RDVVSSLEG-QLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVA+RG+D + + V+ D P +YIHR+GRT R + G ++ +M+++
Sbjct: 299 LLATDVAARGIDIDD-ISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIV 357
Query: 246 EKL 248
K+
Sbjct: 358 GKI 360
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 301 (111.0 bits), Expect = 3.2e-25, P = 3.2e-25
Identities = 76/243 (31%), Positives = 130/243 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
++ILV TPGRL++++D+ F + ILI+DEADR+LD+GF + AI + +Q
Sbjct: 124 IDILVATPGRLMEYLDKG-KFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNM 182
Query: 69 LFSAT-QTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLWSFI 126
LFSAT + V AR L DP + + ++ ++ Q + + K +L +
Sbjct: 183 LFSATLEGSGVIRFAREVLNDP--IEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLL 240
Query: 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SV 185
K + +VF+ + + V E + L+ GIP + G M+Q +R ++F + +V
Sbjct: 241 KQEDVKRAIVFVKT-RDVVSSLEG-QLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVA+RG+D + + V+ D P +YIHR+GRT R + G ++ +M+++
Sbjct: 299 LLATDVAARGIDIDD-ISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIV 357
Query: 246 EKL 248
K+
Sbjct: 358 GKI 360
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 302 (111.4 bits), Expect = 3.8e-25, P = 3.8e-25
Identities = 80/248 (32%), Positives = 128/248 (51%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
++LV TPGRLL + +Q+ +LDEADR+L +GF + L +++ LP+ +QT L
Sbjct: 137 DVLVATPGRLLDLLASNA-LKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLL 195
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT + V+ L L P L H +S + ++Q + V EQK +L IK H
Sbjct: 196 FSATFPEEVRALTTKLLHQP--LEYHLQS--EQESTIEQRVITVNREQKTALLAHLIKQH 251
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
S+ L+F+++ ++ + K GI +G Q R + F SVL
Sbjct: 252 QWSQALIFVSAKNTCNHLAQKLSKR--GISAEVFHGDKAQGARTRVLDGFKNGEISVLIA 309
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK---ML 245
TD+A+RG+D +K + V+ D P A Y+HR+GR+ R G +V ++ E ++
Sbjct: 310 TDIAARGIDIDK-LPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVI 368
Query: 246 EKLREAKI 253
EK + K+
Sbjct: 369 EKKNKIKL 376
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 302 (111.4 bits), Expect = 3.8e-25, P = 3.8e-25
Identities = 80/248 (32%), Positives = 128/248 (51%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
++LV TPGRLL + +Q+ +LDEADR+L +GF + L +++ LP+ +QT L
Sbjct: 137 DVLVATPGRLLDLLASNA-LKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLL 195
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT + V+ L L P L H +S + ++Q + V EQK +L IK H
Sbjct: 196 FSATFPEEVRALTTKLLHQP--LEYHLQS--EQESTIEQRVITVNREQKTALLAHLIKQH 251
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
S+ L+F+++ ++ + K GI +G Q R + F SVL
Sbjct: 252 QWSQALIFVSAKNTCNHLAQKLSKR--GISAEVFHGDKAQGARTRVLDGFKNGEISVLIA 309
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK---ML 245
TD+A+RG+D +K + V+ D P A Y+HR+GR+ R G +V ++ E ++
Sbjct: 310 TDIAARGIDIDK-LPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVI 368
Query: 246 EKLREAKI 253
EK + K+
Sbjct: 369 EKKNKIKL 376
>SGD|S000002602 [details] [associations]
symbol:MSS116 "DEAD-box protein involved splicing of
mitochondrial introns" species:4932 "Saccharomyces cerevisiae"
[GO:0000373 "Group II intron splicing" evidence=IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=IEA;IMP] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0000372 "Group I intron
splicing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0034337 "RNA folding" evidence=IMP] [GO:0033592
"RNA strand annealing activity" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002602
GO:GO:0005524 GO:GO:0006417 GO:GO:0005759 GO:GO:0006397
EMBL:BK006938 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:Z48784 GO:GO:0000373 GO:GO:0000372
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00700000105515 GO:GO:0033592 OrthoDB:EOG437VPN
PIR:S02116 RefSeq:NP_010480.1 PDB:3I5X PDB:3I5Y PDB:3I61 PDB:3I62
PDB:3SQW PDB:3SQX PDB:4DB2 PDB:4DB4 PDBsum:3I5X PDBsum:3I5Y
PDBsum:3I61 PDBsum:3I62 PDBsum:3SQW PDBsum:3SQX PDBsum:4DB2
PDBsum:4DB4 ProteinModelPortal:P15424 SMR:P15424 DIP:DIP-5368N
IntAct:P15424 MINT:MINT-525340 STRING:P15424 PaxDb:P15424
PeptideAtlas:P15424 EnsemblFungi:YDR194C GeneID:851775
KEGG:sce:YDR194C CYGD:YDR194c HOGENOM:HOG000113654 OMA:PEAHENI
EvolutionaryTrace:P15424 NextBio:969573 Genevestigator:P15424
GermOnline:YDR194C GO:GO:0034337 Uniprot:P15424
Length = 664
Score = 312 (114.9 bits), Expect = 4.1e-25, P = 4.1e-25
Identities = 82/269 (30%), Positives = 142/269 (52%)
Query: 1 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
M K + NI++ TPGRL+ +++ N + +LDEADR+L++GF+ L I
Sbjct: 228 MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGI 287
Query: 61 LPKHR-------QTFLFSATQTKSVQDLAR--LSLKDPQYLSVHEESVTATPNRLQQTAM 111
L + +T LFSAT VQ LA ++ K+ +L +++ R+ Q+ +
Sbjct: 288 LNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVV 347
Query: 112 IVP-LEQKLDMLWSFIKAHL-----NSKILVFLTSCKQVKYVFEAFK-KLRPGIPLMCLY 164
I + IK + N K ++F + K ++ K + + +P++ +
Sbjct: 348 ISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFH 407
Query: 165 GRMKQDRRMAIYAQFCEKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGR 223
G++ Q++R ++ +F + S +L CTDV +RG+DF V V+Q+ P ++A+YIHR+GR
Sbjct: 408 GKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPN-VHEVLQIGVPSELANYIHRIGR 466
Query: 224 TARYNSGGRSVLFLTPTEMKMLEKLREAK 252
TAR G SVLF+ E+ + +L +AK
Sbjct: 467 TARSGKEGSSVLFICKDELPFVRELEDAK 495
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 304 (112.1 bits), Expect = 4.5e-25, P = 4.5e-25
Identities = 80/249 (32%), Positives = 128/249 (51%)
Query: 11 ILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70
++V PGRLL H+ + D S+L++L+LDEAD++ D+GF + ++ LP RQT LF
Sbjct: 123 VVVACPGRLLDHIAQG-TIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLF 181
Query: 71 SATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIKA 128
SAT ++ LA+ L DP + V T P + + P+EQ K +L ++
Sbjct: 182 SATMPIDIRTLAQDILVDPVTVQVG----TVAP-AVTVAHALYPVEQHLKTPLLLELLRH 236
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLF 187
+L+F + + K + E +K G L G + Q+RR A F + +L
Sbjct: 237 TDTESVLIFTRTKHRAKRLGEQLEKA--GYRAASLQGNLSQNRRQAALDGFRDGTFQILV 294
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEK 247
TD+A+RG+D ++ V V+ D P+ +YIHR+GRT R G + +T + M+
Sbjct: 295 ATDIAARGIDVSQ-VSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRA 353
Query: 248 L-REAKIPI 255
+ R PI
Sbjct: 354 IERSLGAPI 362
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 311 (114.5 bits), Expect = 4.5e-25, P = 4.5e-25
Identities = 82/244 (33%), Positives = 132/244 (54%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
++I+V TPGRL + + + + L+LDEADR+LD+GF+ + +I RQT
Sbjct: 323 IHIVVATPGRLSDMLTKKI-INLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTL 381
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT + +Q A+ +L P ++V A+ N LQ+ V E KL + ++
Sbjct: 382 LFSATMPRKIQFFAKSALVKPIVVNVGRAGA-ASLNVLQELEF-VRSENKLVRVLECLQK 439
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ-DRRMAIYAQFCEKRSVLF 187
+ K+L+F V ++E L G+ + ++G Q DR I A ++ VL
Sbjct: 440 -TSPKVLIFAEKKVDVDNIYEYL--LVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLV 496
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP-TEMKMLE 246
TDVAS+GLDF + ++ V+ D PED+ +Y+HR+GRT R G + F+ +EM +L
Sbjct: 497 ATDVASKGLDF-QGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLS 555
Query: 247 KLRE 250
L++
Sbjct: 556 DLKQ 559
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 307 (113.1 bits), Expect = 7.2e-25, P = 7.2e-25
Identities = 84/264 (31%), Positives = 138/264 (52%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+++LV TPGRLL + + +QL+IL+LDEADR+LD+GF + + I++ LP RQ
Sbjct: 124 VDVLVATPGRLLDLVQQNA-VKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNL 182
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
+FSAT + +++LA+ + P +SV + AT ++Q V QK +L IK
Sbjct: 183 MFSATFSDEIRELAKGLVNHPVEISVTPRNAAATT--VKQWICPVDKTQKSALLIQLIKQ 240
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLF 187
++LVF + + ++ ++ I ++G Q R A F VL
Sbjct: 241 ENWQQVLVFSRTKHGANRLAKSL--IQAEISAAAIHGNKSQGARTKALADFKSGEVRVLV 298
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEK 247
TD+A+RGLD ++ + VV D P Y+HR+GRT R + G++V ++ E+K+L+
Sbjct: 299 ATDIAARGLDIDQ-LPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKD 357
Query: 248 LREAKIPIHFTKANTKRLQPVSGL 271
+ E I + + PV L
Sbjct: 358 I-ERLINRVLERQEVEGFSPVHAL 380
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 309 (113.8 bits), Expect = 7.5e-25, P = 7.5e-25
Identities = 81/245 (33%), Positives = 122/245 (49%)
Query: 11 ILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70
++V TPGR++ HM LQ L+LDEAD +L +GF + I+ P RQ LF
Sbjct: 127 VIVGTPGRVMDHM-RRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLALF 185
Query: 71 SATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL 130
SAT + ++ +A LK+ +S+ T + ++Q + V KL+ L ++
Sbjct: 186 SATMPEQIKRVANKHLKNATNISIAASHTTV--DSIEQRFVQVSQHNKLEALVRVLEVEN 243
Query: 131 NSKILVFL---TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVL 186
I++F+ SC ++ EA G L+G M Q R Q K +L
Sbjct: 244 TEGIIIFVRTRNSCVELAEKLEA-----RGYASSPLHGDMNQQARERAVEQLKNGKLDIL 298
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVA+RGLD + + VV D P D +Y+HR+GRT R G ++LF+T EM+ML
Sbjct: 299 IATDVAARGLDVER-IGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLR 357
Query: 247 KLREA 251
+ A
Sbjct: 358 TIERA 362
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 310 (114.2 bits), Expect = 8.4e-25, P = 8.4e-25
Identities = 88/245 (35%), Positives = 135/245 (55%)
Query: 9 LNILVCTPGRL--LQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ 66
++I++ TPGRL LQ M+E N + L+LDEADR+LD+GF+ + I+ + RQ
Sbjct: 402 VDIVIATPGRLNDLQ-MNELINL--RSITYLVLDEADRMLDMGFEPQIMKIILDIRPDRQ 458
Query: 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI 126
T + SAT V+ LA+ LKDP + V + A N +QQT + V ++K D ++ FI
Sbjct: 459 TVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAV-NTVQQTVLFVQEDEKKDYVFDFI 517
Query: 127 -KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ-DRRMAIYAQFCEKR- 183
+ K+L+F+ K++K + GI + L+G +Q DR A+ F + R
Sbjct: 518 HRMEPLDKVLIFVG--KKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQ-DFKDGRV 574
Query: 184 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243
+L TD+ASRGLD + + V D P +V Y+HRVGRT R G SV +T + +
Sbjct: 575 RILVATDLASRGLDVHD-ITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWR 633
Query: 244 MLEKL 248
+ +L
Sbjct: 634 VAAEL 638
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 298 (110.0 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 86/257 (33%), Positives = 133/257 (51%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
++IL+ TPGRLL H F ++++L+LDEADR+LD+GF L ++ +L RQT
Sbjct: 132 VDILIATPGRLLDHAHVKSLF-LGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTL 190
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM-LWSFIK 127
FSAT ++ +A ++DP + V + TA +QQ M+ P+++K L S++
Sbjct: 191 FFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTA--ETVQQ--MVYPVDKKRKRELLSYLI 246
Query: 128 AHLN-SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSV 185
N ++LVF T +Q KL GI + + G Q R F K
Sbjct: 247 GSKNWQQVLVF-TKTRQGSDALAEELKL-DGIKAVSINGDKSQGARQKALDDFKAGKVRA 304
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE---M 242
L TDVA+RGLD + ++ VV D P Y+HR+GRT R G +V L+ E +
Sbjct: 305 LIATDVAARGLDIAQ-LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQL 363
Query: 243 KMLEKLREAKIPIHFTK 259
+ +E+L ++P + K
Sbjct: 364 EAIERLLNTRLPQEWLK 380
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 298 (110.0 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 86/257 (33%), Positives = 133/257 (51%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
++IL+ TPGRLL H F ++++L+LDEADR+LD+GF L ++ +L RQT
Sbjct: 132 VDILIATPGRLLDHAHVKSLF-LGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTL 190
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDM-LWSFIK 127
FSAT ++ +A ++DP + V + TA +QQ M+ P+++K L S++
Sbjct: 191 FFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTA--ETVQQ--MVYPVDKKRKRELLSYLI 246
Query: 128 AHLN-SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSV 185
N ++LVF T +Q KL GI + + G Q R F K
Sbjct: 247 GSKNWQQVLVF-TKTRQGSDALAEELKL-DGIKAVSINGDKSQGARQKALDDFKAGKVRA 304
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE---M 242
L TDVA+RGLD + ++ VV D P Y+HR+GRT R G +V L+ E +
Sbjct: 305 LIATDVAARGLDIAQ-LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQL 363
Query: 243 KMLEKLREAKIPIHFTK 259
+ +E+L ++P + K
Sbjct: 364 EAIERLLNTRLPQEWLK 380
>CGD|CAL0000117 [details] [associations]
symbol:DBP7 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000117 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
EMBL:AP006852 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 EMBL:AACQ01000156
RefSeq:XP_712474.1 RefSeq:XP_888745.1 ProteinModelPortal:Q59S50
STRING:Q59S50 GeneID:3645903 GeneID:3704147 KEGG:cal:CaO19.6902
KEGG:cal:CaO19_6902 KO:K14806 Uniprot:Q59S50
Length = 727
Score = 168 (64.2 bits), Expect = 1.8e-24, Sum P(4) = 1.8e-24
Identities = 43/118 (36%), Positives = 63/118 (53%)
Query: 2 EKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
EK + + NILV TPGRL H++ T D SQL+ L+LDE D+++++GF+ + I ++
Sbjct: 256 EKARLRKGCNILVATPGRLADHLENTKTLDISQLRWLVLDEGDKLMELGFEDTIAQITAK 315
Query: 61 ----------------LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTAT 102
LP R L SAT +V+ L + LKDP+ +SV SV T
Sbjct: 316 IDSNSKIADTAEKWQGLPSRRINMLCSATLHSNVKKLGSIVLKDPEMISVETASVAGT 373
Score = 147 (56.8 bits), Expect = 1.8e-24, Sum P(4) = 1.8e-24
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 163 LYGRMKQDRRMAIYAQFCEKRS----VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYI 218
L+G + Q R + F + + +LFCTDVASRGLD + V++ D P + ++
Sbjct: 487 LHGSLSQQTRASTLQSFVKDNNSYNKILFCTDVASRGLDLPNVAN-VIEYDPPFTIDDHL 545
Query: 219 HRVGRTARYNSGGRSVLFLTP 239
HR+GR+AR + G + LFL P
Sbjct: 546 HRIGRSARLGNEGNATLFLLP 566
Score = 70 (29.7 bits), Expect = 1.8e-24, Sum P(4) = 1.8e-24
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 286 AQKAFITYLRS--VHIQKDKEVFDVTKLSIDEFSASLGLPMTPK 327
A +AF +++R+ H+ ++E F+V L + + S GL TPK
Sbjct: 640 AVRAFTSHIRAYATHLSSEREFFNVKLLHLGHLAKSFGLRETPK 683
Score = 60 (26.2 bits), Expect = 1.8e-24, Sum P(4) = 1.8e-24
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 98 SVTAT-PNRLQQTAMIVPLEQKL---DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKK 153
+ T+T P++L Q ++VP + +L D L I H + +VF + V + F+ F +
Sbjct: 382 TTTSTAPDQLIQNVVVVPPKLRLVTLDALLLKISKHSAERTIVFFSCSDSVDFHFDVFTR 441
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 303 (111.7 bits), Expect = 2.4e-24, P = 2.4e-24
Identities = 82/255 (32%), Positives = 142/255 (55%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ + + TPGRL+ M E+ + ++ L+LDEADR+LD+GF+ + I+ Q+ RQT
Sbjct: 249 VEVCIATPGRLID-MLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTL 307
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPN-RLQQTAMIVPLEQKLDMLWSFIK 127
++SAT K V+++A L+D ++ V+ S+ + N R+ Q +V +K D + ++
Sbjct: 308 MWSATWPKEVRNMAADFLQD--FIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHME 365
Query: 128 AHLN-----SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEK 182
++ +KIL+F+ + K+V F + + G P + ++G +Q+ R + QF
Sbjct: 366 KVMDGKDSKNKILIFVGT-KRVADEITRFLR-QDGWPALSIHGDKQQNERDWVLDQFKTG 423
Query: 183 RS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241
+S ++ TDVASRG+D + V+ D P + YIHR+GRT R + G ++ F T
Sbjct: 424 KSPIMVATDVASRGIDVRN-ITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTEN 482
Query: 242 MK----MLEKLREAK 252
K +L L+EAK
Sbjct: 483 SKQARDLLGVLQEAK 497
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 298 (110.0 bits), Expect = 2.5e-24, P = 2.5e-24
Identities = 89/251 (35%), Positives = 133/251 (52%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V T GRLLQ++ E NFDC ++ LILDEADR+LD+GF + + I + +QT L
Sbjct: 128 DIVVATTGRLLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLL 186
Query: 70 FSAT-QTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLWSFIK 127
FSAT + ++QD A L+DP +S + T ++ Q LE K +L +K
Sbjct: 187 FSATLEGDAIQDFAERLLEDPVEVSANPS--TRERKKIHQWYYRADDLEHKTALLVHLLK 244
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCEKR-SV 185
++ +VF+ ++ + V E LR GI L G M Q +R + E R +V
Sbjct: 245 QPEATRSIVFV---RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301
Query: 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245
L TDVA+RG+D V V D P +Y+HR+GRTAR G ++ + + +L
Sbjct: 302 LVATDVAARGIDIPD-VSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360
Query: 246 EKL-REAKIPI 255
K+ R + PI
Sbjct: 361 GKVGRYIEEPI 371
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 305 (112.4 bits), Expect = 3.1e-24, P = 3.1e-24
Identities = 86/265 (32%), Positives = 140/265 (52%)
Query: 11 ILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70
I++ TPGRL+ + + + + L+LDEADR+LD+GF+ + IVSQ+ RQT ++
Sbjct: 407 IVIATPGRLIDFLS-AGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 465
Query: 71 SATQTKSVQDLARLSLKDPQYLSVHEESVTATPNR-LQQTAMIVP---LEQKLDMLWSFI 126
SAT K V+ LA L + Y+ ++ S+ + N ++Q + E+KL L S I
Sbjct: 466 SATWPKEVKQLAEDFLGN--YIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDI 523
Query: 127 KAHLNS--KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR 183
S KI++F+ + ++V + + G+ ++G Q R + +F K
Sbjct: 524 YDTSESPGKIIIFVETKRRVDNLVRFIRSF--GVRCGAIHGDKSQSERDFVLREFRSGKS 581
Query: 184 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243
++L TDVA+RGLD + + +V+ D P++ YIHR+GRT R N+ G S F T K
Sbjct: 582 NILVATDVAARGLDVD-GIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAK 640
Query: 244 ----MLEKLREAKIPIHFTKANTKR 264
+++ LREA I+ N R
Sbjct: 641 QAKALVDVLREANQEINPALENLAR 665
>POMBASE|SPBC21H7.04 [details] [associations]
symbol:dbp7 "ATP-dependent RNA helicase Dbp7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC21H7.04
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
HOGENOM:HOG000268799 OrthoDB:EOG4W6S47 PIR:T39930
RefSeq:NP_595929.1 ProteinModelPortal:O60173 STRING:O60173
EnsemblFungi:SPBC21H7.04.1 GeneID:2540518 KEGG:spo:SPBC21H7.04
NextBio:20801645 Uniprot:O60173
Length = 709
Score = 167 (63.8 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 43/113 (38%), Positives = 66/113 (58%)
Query: 2 EKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
EK + + +NIL+ TPGRL H++ T D SQ++ ++LDE DR++D+GF++ L I+S
Sbjct: 262 EKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSY 321
Query: 61 L-------------PKHRQTFLFSATQTKSVQDLARLSLKDPQYL--SVHEES 98
L P + T L SAT +V+ L+ +LKD YL S+ EE+
Sbjct: 322 LESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEET 374
Score = 163 (62.4 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 45/118 (38%), Positives = 60/118 (50%)
Query: 163 LYGRMKQDRRMAIYAQFCEKRS----VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYI 218
L+G + Q R + F +L CTDVA+RGLD VD VVQ D P Y+
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPN-VDLVVQYDAPFSTDDYL 531
Query: 219 HRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQP--VSGLLAA 274
HR+GRTAR G +++FL P E + + L+ + AN QP SGLL+A
Sbjct: 532 HRIGRTARAGHNGAAIMFLLPKESEYINLLKSS------VSANILE-QPNGPSGLLSA 582
Score = 128 (50.1 bits), Expect = 4.6e-20, Sum P(3) = 4.6e-20
Identities = 34/99 (34%), Positives = 58/99 (58%)
Query: 61 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYL--SVHEES---VTATPNRLQQTAMIVPL 115
+P + T L SAT +V+ L+ +LKD YL S+ EE+ + P +L Q ++VP
Sbjct: 335 IPSRKVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYVVVPP 394
Query: 116 EQKLDMLWSFIKAHLNS--KILVFLTSCKQVKYVFEAFK 152
+ +L L + +++H+ S KI++FL+ V + FEAF+
Sbjct: 395 KLRLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAFR 433
Score = 72 (30.4 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 24/105 (22%), Positives = 49/105 (46%)
Query: 272 LAALLVKYPDMQHRAQKAFITYLRS--VHIQKDKEVFDVTKLSIDEFSASLGLPMTP-KI 328
L +++ M++ A++AF +Y+R+ H+ ++ +F++ L + + S L P KI
Sbjct: 605 LERFILENEPMRNIAKRAFTSYVRAYATHLSSERSIFNMRDLHLGHIAKSFALREAPGKI 664
Query: 329 RFLNQKKGKMV--PVKPVLDNAEKEDKLMISREKLLPDNFTEENV 371
N K + V + K+ ++ R K + TE N+
Sbjct: 665 SGANSSKPRKQGGSVDKGKSKSSKDIAALMHR-KAMEHYSTEHNI 708
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 302 (111.4 bits), Expect = 4.8e-24, P = 4.8e-24
Identities = 77/249 (30%), Positives = 128/249 (51%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+++LV PGRLL + + D S ++IL+LDEADR+LD+GF + ++++LP RQ
Sbjct: 130 VDVLVACPGRLLDLAGQG-SVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNL 188
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT + + LA L +P+ + V + T R++Q + K +L I
Sbjct: 189 LFSATFSNDITSLAGKLLHNPERIEVTPPNTTV--ERIEQRVFRLAANHKRSLLAHLITV 246
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVLF 187
++LVF + + E K G+ + ++G Q+ R A F ++
Sbjct: 247 GAWEQVLVFTRTKHGANRLAEYLDK--HGLAAVAIHGNKSQNARTKALADFKAGDVRIMV 304
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML-- 245
TD+A+RGLD ++ + VV + P Y+HR+GRT R G ++ + P E K+L
Sbjct: 305 ATDIAARGLDIDQ-LPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKS 363
Query: 246 -EKLREAKI 253
E++ + KI
Sbjct: 364 IERMTKQKI 372
>ASPGD|ASPL0000056064 [details] [associations]
symbol:AN0204 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AACD01000005
InterPro:IPR025313 Pfam:PF13959 KO:K14806 RefSeq:XP_657808.1
ProteinModelPortal:Q5BGX6 STRING:Q5BGX6
EnsemblFungi:CADANIAT00002528 GeneID:2875981 KEGG:ani:AN0204.2
HOGENOM:HOG000268799 OMA:RAYATHI OrthoDB:EOG4W6S47 Uniprot:Q5BGX6
Length = 778
Score = 182 (69.1 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 55/154 (35%), Positives = 79/154 (51%)
Query: 2 EKEHVNE-LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
EK + + LNILV TPGRL H++ T D S ++ L+LDE DR++++GF+K L I+S+
Sbjct: 282 EKARLRKGLNILVATPGRLADHLENTQALDVSNVRWLVLDEGDRLMELGFEKELQEIISK 341
Query: 61 L------------PKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVH--EESVTATPNRL 106
L P R T L SAT +VQ L +SLKD ++ +E T
Sbjct: 342 LDARQRPSRIPGVPAKRATILCSATLKMNVQKLGEISLKDAVHIKADPADEDGEKTAEDK 401
Query: 107 QQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTS 140
A VP + K ++ + A L LV LT+
Sbjct: 402 DGDAFRVPAQLKQS--YAIVAAKLR---LVTLTA 430
Score = 174 (66.3 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 55/195 (28%), Positives = 96/195 (49%)
Query: 150 AFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR--SVLFCTDVASRGLDFNKAVDWVVQ 207
AF + + L+G + Q R + + F + R SVL CTDVASRGLD VD VV+
Sbjct: 506 AFSNSSNAVTMYKLHGSLPQHVRTSTLSSFAKNRDPSVLICTDVASRGLDLPN-VDLVVE 564
Query: 208 VDCPEDVASYIHRVGRTARYNSGGRSVLFLTP-TEMKMLEKLREAKIP--IHFTKANTKR 264
D ++HR+GRTAR GR+++FL P E +E L+ T++ T
Sbjct: 565 YDPAFSADEHLHRIGRTARLGRDGRALVFLLPGCEENYVEILKRGYRDGGKALTRSTTDD 624
Query: 265 L--QPVSGLLAAL-----LVKY----PDMQHRAQKAFITYLRS--VHIQKDKEVFDVTKL 311
+ + G + + L ++ P+ A++A+ +++R+ H+ ++ +F++ +L
Sbjct: 625 ILKRGFGGNIESQKWQLELERWALDNPEYLEMARRAYQSHIRAYATHVANERHIFNIKEL 684
Query: 312 SIDEFSASLGLPMTP 326
+ + S L P
Sbjct: 685 HLGHLAKSFALRDRP 699
Score = 51 (23.0 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 103 PNRLQQTAMIVPLEQKLDMLWSFIKAHLNSK-----ILVFLTSCKQVKYVFEAF-KKL 154
P +L+Q+ IV + +L L +F+K K ++F++ V + FE F +KL
Sbjct: 409 PAQLKQSYAIVAAKLRLVTLTAFMKRTFMRKGSVMKAIIFVSCADSVNFHFEVFTRKL 466
Score = 45 (20.9 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 512 GRRKKAKIYFDSDSDNDNDERKQNKDD 538
G+++KA Y D+D+D+R D
Sbjct: 727 GKKRKATGYGGGRDDDDDDDRPSATTD 753
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 301 (111.0 bits), Expect = 5.8e-24, P = 5.8e-24
Identities = 74/233 (31%), Positives = 121/233 (51%)
Query: 11 ILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70
++V TPGRL+ H+ + +L++ +LDEAD +L++GF + + I+ +PK Q LF
Sbjct: 137 VVVGTPGRLMDHL-RRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLF 195
Query: 71 SATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL 130
SAT +++ +A LKDP+++ V +V + Q A V K+ L +
Sbjct: 196 SATMPPAIRKIANRFLKDPEHIKV--AAVKKAKANITQYAWKVSGITKMTALERIAEVVE 253
Query: 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 189
+++F+ + + E + R G P + L G + Q +R Q K S+L T
Sbjct: 254 YDAMIIFVRTRNDTVDIAEKLE--RAGYPALALNGDLNQAQRERCIDQMKSGKSSILVAT 311
Query: 190 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 242
DV +RGLD + + V+ D P D +Y+HR+GRT R G S+ F+ P EM
Sbjct: 312 DVVARGLDIPR-ISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREM 363
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 295 (108.9 bits), Expect = 6.6e-24, P = 6.6e-24
Identities = 79/251 (31%), Positives = 129/251 (51%)
Query: 3 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 62
K E + +V TPGR+ H+++ N + L++LILDEADR+LD+GF L AI
Sbjct: 118 KALAKEPHFIVATPGRIADHLEQK-NLFLNGLELLILDEADRMLDLGFAPQLKAINEAAD 176
Query: 63 -KHRQTFLFSATQTKS-VQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKL 119
K RQT +FSAT S + ++A LK+P ++++ + A + Q + L+ K
Sbjct: 177 HKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIG--TAHAEHQDISQRIYLCDHLDHKE 234
Query: 120 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
+L + + ++++F + + + A K G L G +KQ R I QF
Sbjct: 235 ALLSRLLSDESHKQVIIFTATRADTERL--AAKLSAQGFATAALSGELKQAARNQIMDQF 292
Query: 180 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
++ +L TDVASRGLD V V+ D P+ Y+HR+GRT R + G ++ +
Sbjct: 293 ARGQQQILVTTDVASRGLDLLN-VSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVG 351
Query: 239 PTEMKMLEKLR 249
P + +K++
Sbjct: 352 PKDWDSFKKVQ 362
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 295 (108.9 bits), Expect = 6.6e-24, P = 6.6e-24
Identities = 79/251 (31%), Positives = 129/251 (51%)
Query: 3 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 62
K E + +V TPGR+ H+++ N + L++LILDEADR+LD+GF L AI
Sbjct: 118 KALAKEPHFIVATPGRIADHLEQK-NLFLNGLELLILDEADRMLDLGFAPQLKAINEAAD 176
Query: 63 -KHRQTFLFSATQTKS-VQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKL 119
K RQT +FSAT S + ++A LK+P ++++ + A + Q + L+ K
Sbjct: 177 HKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIG--TAHAEHQDISQRIYLCDHLDHKE 234
Query: 120 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179
+L + + ++++F + + + A K G L G +KQ R I QF
Sbjct: 235 ALLSRLLSDESHKQVIIFTATRADTERL--AAKLSAQGFATAALSGELKQAARNQIMDQF 292
Query: 180 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238
++ +L TDVASRGLD V V+ D P+ Y+HR+GRT R + G ++ +
Sbjct: 293 ARGQQQILVTTDVASRGLDLLN-VSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVG 351
Query: 239 PTEMKMLEKLR 249
P + +K++
Sbjct: 352 PKDWDSFKKVQ 362
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 302 (111.4 bits), Expect = 7.0e-24, P = 7.0e-24
Identities = 79/234 (33%), Positives = 131/234 (55%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIV--SQLP--KHR 65
NIL TPGRLL + + ++L+ L+LDEADR+LD+GF++ + ++ S +P + R
Sbjct: 415 NILCATPGRLLDVIRKE-KIGLTKLRYLVLDEADRMLDMGFREDIENLLKSSGMPSKEER 473
Query: 66 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLW 123
QT +FSAT S+Q LAR LK P YL V V + ++Q M++ +++ K D L
Sbjct: 474 QTLMFSATFPSSIQSLAREILK-PDYLFVVVGQVGGACSDVEQ--MVIEVDEFGKKDKLM 530
Query: 124 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR 183
++ + + +VF+ + K+ ++ A + +P ++G +Q R F +
Sbjct: 531 EILQEIGSERTMVFVKTKKKADFI--ATFLCQEKVPSTSIHGDREQKERETALRDFRTGQ 588
Query: 184 S-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 236
V+ T VA+RGLD V +V+ D P+D+ Y+HR+GRT R + GR++ F
Sbjct: 589 CPVIVATSVAARGLDIEN-VSYVINFDIPDDIDEYVHRIGRTGRCGNTGRAISF 641
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 295 (108.9 bits), Expect = 7.3e-24, P = 7.3e-24
Identities = 82/250 (32%), Positives = 132/250 (52%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+++LV TPGRLL ++ Q++IL+LDEADR+LD+GF + ++++LP RQ
Sbjct: 126 VDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNL 184
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
LFSAT + ++ LA L +P + V + TA+ +++ Q V ++K ++L I
Sbjct: 185 LFSATFSDDIKALAEKLLHNPLEIEVARRN-TAS-DQVTQHVHFVDKKRKRELLSHMIGK 242
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLF 187
++LVF + ++ E K GI ++G Q R A F VL
Sbjct: 243 GNWQQVLVFTRTKHGANHLAEQLNK--DGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML-- 245
TD+A+RGLD + + VV + P Y+HR+GRT R + G ++ + E K+L
Sbjct: 301 ATDIAARGLDIEE-LPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 246 -EKLREAKIP 254
EKL + +IP
Sbjct: 360 IEKLLKKEIP 369
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 304 (112.1 bits), Expect = 8.9e-24, P = 8.9e-24
Identities = 78/243 (32%), Positives = 125/243 (51%)
Query: 3 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 62
KE +I+V TPGRL + E D Q+ +L+LDEADR+LD+GF+ + IV+++P
Sbjct: 552 KELERGADIVVATPGRLNDIL-EMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIP 610
Query: 63 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDML 122
RQT +++AT K V+ +A L +P +++ A + Q +VP +K L
Sbjct: 611 PRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRL 670
Query: 123 WSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
+++ SK+++F C + + + + ++G Q R + QF
Sbjct: 671 EQILRSQERGSKVIIF---CSTKRLCDHLARSVGRHFGAVVIHGDKTQGERDWVLNQFRS 727
Query: 182 KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
+S VL TDVA+RGLD K + V+ D P V Y+HR+GRT R + G + F T
Sbjct: 728 GKSCVLIATDVAARGLDI-KDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQ 786
Query: 241 EMK 243
+ K
Sbjct: 787 DWK 789
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 293 (108.2 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 76/261 (29%), Positives = 136/261 (52%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
++++ TPGRLL H+ + D S L+ L+LDEADR+LD+GF+ ++A+++ P RQT L
Sbjct: 125 HVVIGTPGRLLDHL-RRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQTLL 183
Query: 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
FSAT S+ ++ ++P +SV E ++Q V Q+++ + + +
Sbjct: 184 FSATYPDSIAAMSAGVQREPVEVSVDE---VHGEGAIEQVFYEVDSGQRIEAVERILGHY 240
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLFC 188
L+F + + + V A +R G + ++G + Q R + +F + SVL
Sbjct: 241 RPESALIFCNTKLECQEVANALA-VR-GYAALAIHGDLDQRERDRVLVRFANRSASVLVA 298
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TDVA+RGLD K + V+ + + + HR+GRT R G +V +TP E +++ +
Sbjct: 299 TDVAARGLDI-KELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIAAI 357
Query: 249 REAKIPIHFTKANTKRLQPVS 269
+ I + + L P++
Sbjct: 358 ADVPGSI-IARGDLSTLAPLT 377
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 296 (109.3 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 77/245 (31%), Positives = 131/245 (53%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ + + TPGRL+ M E + ++ L+LDEADR+LD+GF+ + I+SQ+ RQT
Sbjct: 264 VEVCIATPGRLID-MLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTC 322
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPN-RLQQTAMIVPLEQKLDMLWSFIK 127
++SAT K V+ LA L + Y+ V+ S+ + N R+ Q ++ +K D + ++
Sbjct: 323 MWSATWPKEVRQLASDFLNN--YIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKHLE 380
Query: 128 AHLNS---KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS 184
+ + K LVF T K++ F + + G P + ++G +Q R + +F +S
Sbjct: 381 KIMENRGNKCLVF-TGTKRIADEITRFLR-QDGWPALSIHGDKQQQERDWVLNEFKTGKS 438
Query: 185 -VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243
++ TDVASRG+D + + V+ D P + Y+HR+GRT R + G ++ F T K
Sbjct: 439 PIMVATDVASRGIDV-RDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAK 497
Query: 244 MLEKL 248
L
Sbjct: 498 QARDL 502
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 298 (110.0 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 87/261 (33%), Positives = 134/261 (51%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ--LP--KHR 65
++LV TPGRL +D + ++ L+LDEADR+LD+GF+ + IV + +P K R
Sbjct: 321 DLLVATPGRLKDLLDRG-KVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPAVKDR 379
Query: 66 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
QT +FSAT + +Q LAR LKD +LSV V +T + Q + V ++K ++
Sbjct: 380 QTLMFSATFPRDIQMLARDFLKDYVFLSVGR--VGSTSENITQKILYVEDDEKKSVILDL 437
Query: 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG-RMKQDRRMAIYAQFCEKRS 184
+ A+ N +VF T K++ + G P ++G R + +R A+ A
Sbjct: 438 LSANENGLTIVF-TETKRMADNLADYL-YDQGFPATAIHGDRSQYEREKALAAFKNGAAP 495
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK- 243
+L T VA+RGLD V V+ D P D+ Y+HR+GRT R + G + F
Sbjct: 496 ILVATAVAARGLDIPN-VSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNV 554
Query: 244 ---MLEKLREA--KIPIHFTK 259
++E L EA ++P TK
Sbjct: 555 VKGLIELLSEANQEVPDFLTK 575
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 300 (110.7 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 79/248 (31%), Positives = 129/248 (52%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
+ +++ TPGRL+ + E N + + L+LDEADR+LD+GF+ + I+ Q+ RQ
Sbjct: 363 VEVIIATPGRLIDFL-ENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVV 421
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE--QKLDMLWSFI 126
++SAT K VQ LA L D +++ +++A N Q + +E Q+L L + I
Sbjct: 422 MWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEI 481
Query: 127 KAHLNS-----KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181
NS KI+VF+ + +V+ + + + G ++G Q+ R ++ F
Sbjct: 482 SPIKNSGNNGNKIIVFVETKIKVEDILQIIRA--EGYNATSIHGDKTQNERDSVLKDFRN 539
Query: 182 -KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
K ++L TDVASRGLD + +V+ D P +Y+HR+GRT R G + F TP
Sbjct: 540 GKSNILIATDVASRGLDVED-LQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPD 598
Query: 241 EMKMLEKL 248
K +L
Sbjct: 599 NAKQAREL 606
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 296 (109.3 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 74/236 (31%), Positives = 122/236 (51%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
+I+V TPGRL + E Q+ L+LDEADR+LD+GF+ + IV ++P RQT +
Sbjct: 282 DIVVATPGRLNDIL-EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLM 340
Query: 70 FSATQTKSVQDLARLSLKDPQYLSV-HEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128
++AT K V+ +A L +P +++ + + + A + Q ++ P+E++ +
Sbjct: 341 YTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQ 400
Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLF 187
SK+++F C + + + L ++G Q R + QF R+ VL
Sbjct: 401 EPGSKVIIF---CSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLV 457
Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243
TDVA+RGLD K + VV D P V Y+HR+GRT R + G++ F + K
Sbjct: 458 ATDVAARGLDV-KDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSK 512
>TAIR|locus:2032338 [details] [associations]
symbol:AT1G71280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0008266
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC016162
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809
IPI:IPI00539204 PIR:E96737 RefSeq:NP_177284.1 UniGene:At.70351
ProteinModelPortal:Q9FVV4 SMR:Q9FVV4 PRIDE:Q9FVV4
EnsemblPlants:AT1G71280.1 GeneID:843469 KEGG:ath:AT1G71280
GeneFarm:1442 TAIR:At1g71280 InParanoid:Q9FVV4 OMA:NDASIVC
PhylomeDB:Q9FVV4 ArrayExpress:Q9FVV4 Genevestigator:Q9FVV4
Uniprot:Q9FVV4
Length = 465
Score = 225 (84.3 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 47/83 (56%), Positives = 62/83 (74%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
N+L+ TPGRL M D L+ILILDEADR+LD+GF+K +N I+S+LPK R+T L
Sbjct: 137 NLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGL 196
Query: 70 FSATQTKSVQDLARLSLKDPQYL 92
FSATQT++V DLA+ L++P YL
Sbjct: 197 FSATQTQAVADLAKAGLRNP-YL 218
Score = 112 (44.5 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 32/86 (37%), Positives = 42/86 (48%)
Query: 116 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKY---VFEAFKKLRPGIPLMCLYGRMKQDRR 172
+QK L + + N K++VF +C V Y V L+ I +G+M Q R
Sbjct: 223 DQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLK-SISFFPTHGKMDQKGR 281
Query: 173 MAIYAQFCEKRS-VLFCTDVASRGLD 197
A F E S VL CTDVA+RGLD
Sbjct: 282 DTALASFTEASSGVLLCTDVAARGLD 307
Score = 82 (33.9 bits), Expect = 6.5e-20, Sum P(2) = 6.5e-20
Identities = 41/182 (22%), Positives = 81/182 (44%)
Query: 232 RSVLFLTPTEMKMLEKLREAKIPIHFTKANT---------KRLQPVSGL--LAALLVKYP 280
+S+ F PT KM +K R+ + FT+A++ R + G+ + +L +K
Sbjct: 265 KSISFF-PTHGKMDQKGRDTALA-SFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDR 322
Query: 281 DMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVP 340
++ + KAF++++R+ + +F L I + + G+ P I + Q + +V
Sbjct: 323 EVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVG 382
Query: 341 VKPVLDNAEKEDKLMI-SREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRV 399
PV ++ K SREK N D+ E + + + ++D +A+R
Sbjct: 383 FTPVQGITFEDIKFKNKSREKQRQQNLLARK-DKLQQEKRGKRKKSSKEAVDDSNKASRK 441
Query: 400 KK 401
+K
Sbjct: 442 RK 443
Score = 39 (18.8 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 510 ERGRRKKAKIYFDSDSDNDNDERK 533
+RG+RKK+ DS+ + +RK
Sbjct: 420 KRGKRKKSSKEAVDDSNKASRKRK 443
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 284 (105.0 bits), Expect = 3.1e-23, P = 3.1e-23
Identities = 75/256 (29%), Positives = 137/256 (53%)
Query: 15 TPGRLLQHMDETPNFDCSQLQILILDEADRILD--VGFKKALNAIVSQLPKHRQTFLFSA 72
TPGR+L M + +Q+L+LDEAD +L +GFK+ + I ++LPK+ Q + SA
Sbjct: 149 TPGRVLD-MIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207
Query: 73 TQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSFIKAHLN 131
T K + ++ R + DP + V + ++ ++Q + V E+ K D L +
Sbjct: 208 TMNKDILEVTRKFMNDPVKILVKRDEISL--EGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
Query: 132 SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRS-VLFCTD 190
++ ++F + K+V ++ + + ++ ++ ++G MKQ+ R + F S VL TD
Sbjct: 266 TQCVIFCNTKKKVDWLSQ--RLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323
Query: 191 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 250
V +RG+D + V V+ D PE + +YIHR+GR+ R+ G ++ F+T ++ L ++ +
Sbjct: 324 VWARGIDVQQ-VSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382
Query: 251 A-KIPIHFTKANTKRL 265
I I+ AN L
Sbjct: 383 FYSIKINPMPANFAEL 398
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 283 (104.7 bits), Expect = 3.7e-23, P = 3.7e-23
Identities = 73/242 (30%), Positives = 128/242 (52%)
Query: 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 65
++ +++LV TPGRL+ + + ++++++LDEADR+LD+GF +++N I+ LP
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVY-FEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV 179
Query: 66 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
Q LFSAT ++ V++LA+ +++DP +S+ A+ + + Q + V + K +L
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQ--ASKSNISQWLITVDKDTKSALLSHL 237
Query: 126 IKAHLNSKILVFL-TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR 183
I + L+F+ T K V + K+ GI + Q R + F K
Sbjct: 238 INEQQWDQALIFIETKHGAAKLVSQLEKR---GIHAEAFHSGRSQAIRAQLLEDFKSGKI 294
Query: 184 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243
L T VA+RG+D ++ + VV D P Y+HR+GRT R + G ++ F++ K
Sbjct: 295 KYLVATGVAARGIDIDQ-LSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353
Query: 244 ML 245
L
Sbjct: 354 NL 355
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 283 (104.7 bits), Expect = 3.7e-23, P = 3.7e-23
Identities = 73/242 (30%), Positives = 128/242 (52%)
Query: 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHR 65
++ +++LV TPGRL+ + + ++++++LDEADR+LD+GF +++N I+ LP
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVY-FEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV 179
Query: 66 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
Q LFSAT ++ V++LA+ +++DP +S+ A+ + + Q + V + K +L
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQ--ASKSNISQWLITVDKDTKSALLSHL 237
Query: 126 IKAHLNSKILVFL-TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR 183
I + L+F+ T K V + K+ GI + Q R + F K
Sbjct: 238 INEQQWDQALIFIETKHGAAKLVSQLEKR---GIHAEAFHSGRSQAIRAQLLEDFKSGKI 294
Query: 184 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243
L T VA+RG+D ++ + VV D P Y+HR+GRT R + G ++ F++ K
Sbjct: 295 KYLVATGVAARGIDIDQ-LSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353
Query: 244 ML 245
L
Sbjct: 354 NL 355
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 295 (108.9 bits), Expect = 4.1e-23, P = 4.1e-23
Identities = 81/244 (33%), Positives = 126/244 (51%)
Query: 11 ILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70
I++CTPGRL + D S + L+LDEADR+LD+GF+ + ++ + RQT +
Sbjct: 409 IIICTPGRL-NDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMT 467
Query: 71 SATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL 130
SAT V+ LA+ +K+P + V + AT + Q ++ K + + SF+K ++
Sbjct: 468 SATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVK-NM 526
Query: 131 NS--KILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQ-DRRMAIYAQFCEKRSVL 186
+S KI++F C + + +L G C++G Q DR AI +L
Sbjct: 527 SSTDKIIIF---CGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRIL 583
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVASRGLD + V+ D P ++ Y+HRVGRT R G S+ F T + M +
Sbjct: 584 VATDVASRGLDIED-ITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAK 642
Query: 247 KLRE 250
+L E
Sbjct: 643 ELIE 646
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 295 (108.9 bits), Expect = 4.2e-23, P = 4.2e-23
Identities = 79/244 (32%), Positives = 127/244 (52%)
Query: 3 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 62
KE ++I+V TPGRL + E Q+ L+LDEADR+LD+GF+ + IV+++P
Sbjct: 346 KEIERGVDIVVATPGRLNDIL-EMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVP 404
Query: 63 KHRQTFLFSATQTKSVQDLARLSLKDPQYLSV-HEESVTATPNRLQQTAMIVPLEQKLDM 121
RQT +++AT K V+ +A L +P +++ + + + A + Q ++ P+E K
Sbjct: 405 TKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPME-KHSR 463
Query: 122 LWSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 180
L +++ SKI++F C + + + L ++G Q R + QF
Sbjct: 464 LEQILRSQEPGSKIIIF---CSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFR 520
Query: 181 EKRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 239
R+ VL TDVA+RGLD K + VV D P V Y+HR+GRT R + G + F
Sbjct: 521 SGRTPVLVATDVAARGLDV-KDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGD 579
Query: 240 TEMK 243
+ K
Sbjct: 580 QDAK 583
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 286 (105.7 bits), Expect = 4.7e-23, P = 4.7e-23
Identities = 79/253 (31%), Positives = 132/253 (52%)
Query: 3 KEHVNEL----NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIV 58
+EH + L +I+V TPGRLL+++D FDC ++ LILDEADR+LD+GF ++ +
Sbjct: 116 QEHADILATTQDIVVATPGRLLEYID-AERFDCRAIEWLILDEADRMLDMGFGPTVDRLS 174
Query: 59 SQLPKHRQTFLFSAT-QTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LE 116
++ +QT LFSAT + + V+ LKDP + V E ++ Q +
Sbjct: 175 TECRWRKQTLLFSATLEGRGVEGFTADLLKDPAH--VDAEPPRRERKKISQWYHRADDMP 232
Query: 117 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIY 176
K+++L + I VFL + +++ + +K + IP + G M QDRR
Sbjct: 233 HKVELLKKILTEQAERSI-VFLKTRERLADLRAELEKAQ--IPCAWIQGEMPQDRRNNAI 289
Query: 177 AQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 235
++F E ++L TDVA+RG+D + V+ D P Y+HR+GRT R G ++
Sbjct: 290 SRFREGDVNILLATDVAARGIDVPD-ISHVINFDLPRSADVYLHRIGRTGRAGKKGIAIS 348
Query: 236 FLTPTEMKMLEKL 248
+ + M+ ++
Sbjct: 349 LVEAHDQPMMARV 361
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 286 (105.7 bits), Expect = 4.7e-23, P = 4.7e-23
Identities = 79/253 (31%), Positives = 132/253 (52%)
Query: 3 KEHVNEL----NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIV 58
+EH + L +I+V TPGRLL+++D FDC ++ LILDEADR+LD+GF ++ +
Sbjct: 116 QEHADILATTQDIVVATPGRLLEYID-AERFDCRAIEWLILDEADRMLDMGFGPTVDRLS 174
Query: 59 SQLPKHRQTFLFSAT-QTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LE 116
++ +QT LFSAT + + V+ LKDP + V E ++ Q +
Sbjct: 175 TECRWRKQTLLFSATLEGRGVEGFTADLLKDPAH--VDAEPPRRERKKISQWYHRADDMP 232
Query: 117 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIY 176
K+++L + I VFL + +++ + +K + IP + G M QDRR
Sbjct: 233 HKVELLKKILTEQAERSI-VFLKTRERLADLRAELEKAQ--IPCAWIQGEMPQDRRNNAI 289
Query: 177 AQFCEKR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 235
++F E ++L TDVA+RG+D + V+ D P Y+HR+GRT R G ++
Sbjct: 290 SRFREGDVNILLATDVAARGIDVPD-ISHVINFDLPRSADVYLHRIGRTGRAGKKGIAIS 348
Query: 236 FLTPTEMKMLEKL 248
+ + M+ ++
Sbjct: 349 LVEAHDQPMMARV 361
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 288 (106.4 bits), Expect = 4.7e-23, P = 4.7e-23
Identities = 73/242 (30%), Positives = 125/242 (51%)
Query: 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
++ +V TPGRL+ +D + D S+L++L+LDEADR+LD+GF ++ I + P RQT
Sbjct: 124 VDFIVATPGRLVDLLDRR-SLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQTL 182
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLWSFIK 127
LF+AT ++ LA L++P+ + + T ++Q + L K +L I
Sbjct: 183 LFTATMDSAMARLAGRLLREPERIDI--AGTKTTHEHIEQRLHVADDLHHKNRLLRHLIT 240
Query: 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVL 186
+ ++F + + + + A + G L+G M Q+ R A + R +L
Sbjct: 241 DESLRRAIIFSATKRDAENL--ALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLL 298
Query: 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246
TDVA+RGLD + V+ D P+ Y+HR+GRT R + G ++ F + E+ L
Sbjct: 299 VATDVAARGLDVT-GISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLA 357
Query: 247 KL 248
++
Sbjct: 358 RI 359
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 297 (109.6 bits), Expect = 4.9e-23, P = 4.9e-23
Identities = 84/256 (32%), Positives = 130/256 (50%)
Query: 11 ILVCTPGRLLQHMDETPN--FDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTF 68
I+VCTPGR++ + + + L+LDEADR+ D+GF+ + I++ + RQT
Sbjct: 544 IVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTV 603
Query: 69 LFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK----LDMLWS 124
LFSAT ++++ LAR LK P ++V SV A+ ++Q + P E K L++L
Sbjct: 604 LFSATFPRAMEALARKVLKKPVEITVGGRSVVAS--EVEQIVEVRPEESKFSRLLELLGE 661
Query: 125 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ-DRRMAIYAQFCEKR 183
L+ + LVF+ + + K G ++G Q DR I
Sbjct: 662 LYNNQLDVRTLVFVDRQESADALLSDLMKR--GYTSNSIHGGKDQHDRDSTISDYKAGVF 719
Query: 184 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243
VL T V +RGLD K++ VV DCP + Y+HRVGRT R G +V F+TP + K
Sbjct: 720 DVLIATSVVARGLDV-KSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEK 778
Query: 244 ----MLEKLREAKIPI 255
+ + L+ +K P+
Sbjct: 779 YAVDIAKALKMSKQPV 794
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 292 (107.8 bits), Expect = 5.1e-23, P = 5.1e-23
Identities = 74/242 (30%), Positives = 123/242 (50%)
Query: 11 ILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70
I+V TPGR++ M E+ + + L++DEADR++++GF++ ++ I + + RQ +
Sbjct: 265 IVVGTPGRIIDFM-ESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQVLYW 323
Query: 71 SATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE-QKLDMLWSFI--- 126
SAT K V A ++ P L + +TA N + Q IVP + K+D L +
Sbjct: 324 SATWPKKVSSFAEKHIRTPIRLQIGSSQLTANKN-ISQKFKIVPTDADKVDALMDTLGEI 382
Query: 127 -KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-S 184
A ++ L+F + K + + + + L+G + Q+RR I F KR
Sbjct: 383 YSADEKAQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLD 442
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244
++ TDVASRGLD K + V+ P D +Y+HR+GRT R + G S L+ +
Sbjct: 443 IVVATDVASRGLDI-KGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNSLDD 501
Query: 245 LE 246
+E
Sbjct: 502 ME 503
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 287 (106.1 bits), Expect = 5.9e-23, P = 5.9e-23
Identities = 73/241 (30%), Positives = 128/241 (53%)
Query: 11 ILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70
++V TPGRLL ++ + ++ L+LDEADR+L++GF + +++ +PK +QT LF
Sbjct: 152 LVVATPGRLLDLCTQS-HISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPKRKQTLLF 210
Query: 71 SATQTKSVQDLA-RLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
SAT +++ LA +L DP L V + A +++ +V K L + +K +
Sbjct: 211 SATLPEALDSLAGKLLTNDP--LKVEASTRNAVVGEIEEQLYLVNKGSKAQALIALLKQY 268
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVLFC 188
++LVF+++ + A + ++ GI L+G Q R A F ++ VL
Sbjct: 269 QWPQVLVFISARDDADAI--AKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVA 326
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TD+ +RG+ + A+ V+ +D P Y+HR+GRTAR + G ++ + EM L +
Sbjct: 327 TDLMARGIHVD-ALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEMPNLTAI 385
Query: 249 R 249
R
Sbjct: 386 R 386
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 287 (106.1 bits), Expect = 5.9e-23, P = 5.9e-23
Identities = 73/241 (30%), Positives = 128/241 (53%)
Query: 11 ILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70
++V TPGRLL ++ + ++ L+LDEADR+L++GF + +++ +PK +QT LF
Sbjct: 152 LVVATPGRLLDLCTQS-HISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPKRKQTLLF 210
Query: 71 SATQTKSVQDLA-RLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129
SAT +++ LA +L DP L V + A +++ +V K L + +K +
Sbjct: 211 SATLPEALDSLAGKLLTNDP--LKVEASTRNAVVGEIEEQLYLVNKGSKAQALIALLKQY 268
Query: 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CEKRSVLFC 188
++LVF+++ + A + ++ GI L+G Q R A F ++ VL
Sbjct: 269 QWPQVLVFISARDDADAI--AKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVA 326
Query: 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248
TD+ +RG+ + A+ V+ +D P Y+HR+GRTAR + G ++ + EM L +
Sbjct: 327 TDLMARGIHVD-ALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEMPNLTAI 385
Query: 249 R 249
R
Sbjct: 386 R 386
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 291 (107.5 bits), Expect = 6.5e-23, P = 6.5e-23
Identities = 85/267 (31%), Positives = 138/267 (51%)
Query: 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVS--QLPK--HR 65
NIL TPGRLL + E +++ L+LDEADR+LD+GF + ++S ++P R
Sbjct: 296 NILCATPGRLLDII-EKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRR 354
Query: 66 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSF 125
QT +FSAT + VQ LA LK Y+ + + + +QQ + VP K D L
Sbjct: 355 QTLMFSATFPEEVQRLAGEFLKT-DYIFLVIGNTCGACSDVQQNILQVPRLSKRDKLIEI 413
Query: 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG-RMKQDRRMAIYAQFCEKRS 184
+++ + +VF+ + K+ Y+ AF + +P ++G R +++R +A+ K
Sbjct: 414 LQSTGGERTMVFVDTKKKADYL-AAFL-CQENLPSTSIHGDREQREREIALRDFRSGKCQ 471
Query: 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE--- 241
+L T VASRGLD V V+ D P + Y+HR+GRT R + G++V F
Sbjct: 472 ILVATSVASRGLDIEN-VQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDDQSDGH 530
Query: 242 --MKMLEKLREAK--IPIHFTKANTKR 264
+L+ L EA+ +P+ + +R
Sbjct: 531 LVQSLLKVLSEAQQEVPVWLEEMAVQR 557
WARNING: HSPs involving 575 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 564 511 0.00087 119 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 825
No. of states in DFA: 611 (65 KB)
Total size of DFA: 276 KB (2146 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 49.76u 0.18s 49.94t Elapsed: 00:00:02
Total cpu time: 49.81u 0.18s 49.99t Elapsed: 00:00:03
Start: Tue May 21 07:10:54 2013 End: Tue May 21 07:10:57 2013
WARNINGS ISSUED: 2