Query 008461
Match_columns 564
No_of_seqs 424 out of 2656
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 12:27:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0343 RNA Helicase [RNA proc 100.0 2E-111 4E-116 883.1 36.8 538 1-560 183-757 (758)
2 KOG0342 ATP-dependent RNA heli 100.0 1.9E-66 4.1E-71 540.8 27.5 323 7-334 204-529 (543)
3 KOG0345 ATP-dependent RNA heli 100.0 1.1E-66 2.3E-71 539.4 25.5 326 6-333 129-457 (567)
4 KOG0348 ATP-dependent RNA heli 100.0 1.6E-60 3.6E-65 498.7 21.0 329 2-331 255-666 (708)
5 KOG0330 ATP-dependent RNA heli 100.0 2.2E-51 4.8E-56 417.6 19.3 240 7-251 178-418 (476)
6 KOG0338 ATP-dependent RNA heli 100.0 3.2E-49 7E-54 412.0 18.4 274 6-284 300-588 (691)
7 COG0513 SrmB Superfamily II DN 100.0 6.7E-48 1.5E-52 424.9 24.9 240 8-251 150-392 (513)
8 KOG0331 ATP-dependent RNA heli 100.0 1.7E-47 3.7E-52 410.5 22.0 239 6-248 213-456 (519)
9 KOG0328 Predicted ATP-dependen 100.0 3.2E-45 7E-50 359.2 19.5 249 7-261 144-395 (400)
10 KOG0333 U5 snRNP-like RNA heli 100.0 1.3E-44 2.9E-49 378.8 20.3 236 7-248 371-632 (673)
11 KOG0326 ATP-dependent RNA heli 100.0 3E-44 6.5E-49 357.3 18.4 247 7-260 202-450 (459)
12 KOG0340 ATP-dependent RNA heli 100.0 6.6E-44 1.4E-48 359.5 17.7 251 7-260 124-382 (442)
13 PRK11634 ATP-dependent RNA hel 100.0 3.7E-41 8E-46 378.6 31.8 249 7-261 124-374 (629)
14 PRK11776 ATP-dependent RNA hel 100.0 3.4E-41 7.4E-46 368.0 26.4 243 7-256 122-366 (460)
15 PRK04837 ATP-dependent RNA hel 100.0 3.5E-41 7.6E-46 364.1 25.2 239 7-251 132-373 (423)
16 KOG0336 ATP-dependent RNA heli 100.0 3E-41 6.6E-46 344.5 17.8 238 7-249 342-581 (629)
17 PRK10590 ATP-dependent RNA hel 100.0 3.5E-40 7.5E-45 359.7 26.2 239 7-251 124-363 (456)
18 PTZ00110 helicase; Provisional 100.0 3.7E-40 8E-45 366.3 26.7 238 7-249 252-493 (545)
19 PRK04537 ATP-dependent RNA hel 100.0 5.4E-40 1.2E-44 366.5 26.1 240 7-251 133-375 (572)
20 KOG0341 DEAD-box protein abstr 100.0 1.6E-41 3.5E-46 344.5 10.6 236 6-248 300-537 (610)
21 KOG0335 ATP-dependent RNA heli 100.0 1.7E-40 3.6E-45 351.5 18.7 237 6-247 200-451 (482)
22 PLN00206 DEAD-box ATP-dependen 100.0 3E-39 6.4E-44 357.4 26.5 237 7-249 245-484 (518)
23 PRK11192 ATP-dependent RNA hel 100.0 5.4E-39 1.2E-43 348.0 26.9 238 7-250 122-362 (434)
24 KOG0346 RNA helicase [RNA proc 100.0 1.3E-38 2.8E-43 328.2 19.2 239 7-249 144-419 (569)
25 PRK01297 ATP-dependent RNA hel 100.0 8E-38 1.7E-42 342.8 26.5 239 7-251 212-453 (475)
26 KOG0347 RNA helicase [RNA proc 100.0 9.3E-40 2E-44 343.8 10.5 239 7-251 312-581 (731)
27 KOG0339 ATP-dependent RNA heli 100.0 4.5E-38 9.8E-43 328.2 20.5 236 7-248 345-583 (731)
28 KOG0332 ATP-dependent RNA heli 100.0 3.8E-38 8.2E-43 319.4 17.6 238 9-251 208-455 (477)
29 KOG0327 Translation initiation 100.0 8.9E-38 1.9E-42 319.0 18.7 248 7-262 144-393 (397)
30 PTZ00424 helicase 45; Provisio 100.0 5.2E-37 1.1E-41 328.5 25.3 246 7-258 145-393 (401)
31 KOG0350 DEAD-box ATP-dependent 100.0 3.2E-37 6.9E-42 322.1 18.0 243 8-251 270-552 (620)
32 KOG4284 DEAD box protein [Tran 100.0 1.6E-36 3.5E-41 323.4 18.2 234 3-242 138-381 (980)
33 KOG0337 ATP-dependent RNA heli 100.0 2E-36 4.4E-41 310.8 15.7 311 7-328 139-470 (529)
34 KOG0334 RNA helicase [RNA proc 100.0 8.7E-35 1.9E-39 326.6 16.9 238 7-249 487-729 (997)
35 TIGR00614 recQ_fam ATP-depende 100.0 3.2E-33 6.9E-38 306.1 26.4 233 7-250 100-343 (470)
36 TIGR03817 DECH_helic helicase/ 100.0 8.9E-33 1.9E-37 316.2 25.1 265 7-280 128-429 (742)
37 PLN03137 ATP-dependent DNA hel 100.0 1.3E-32 2.8E-37 316.0 25.1 235 7-251 551-798 (1195)
38 PRK11057 ATP-dependent DNA hel 100.0 1.6E-32 3.5E-37 308.9 23.6 233 7-251 114-354 (607)
39 KOG0344 ATP-dependent RNA heli 100.0 1.8E-32 4E-37 292.4 16.2 239 8-250 262-505 (593)
40 TIGR01389 recQ ATP-dependent D 100.0 3E-31 6.4E-36 298.3 24.8 235 7-253 102-344 (591)
41 PRK09751 putative ATP-dependen 100.0 3.2E-29 6.9E-34 298.2 27.3 266 7-280 98-428 (1490)
42 PRK13767 ATP-dependent helicas 100.0 7.2E-29 1.6E-33 289.0 26.0 266 7-280 145-441 (876)
43 TIGR01970 DEAH_box_HrpB ATP-de 100.0 7.3E-29 1.6E-33 284.8 23.6 224 7-243 89-339 (819)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 8.9E-29 1.9E-33 280.6 22.5 216 7-239 134-390 (844)
45 TIGR00580 mfd transcription-re 100.0 4.1E-28 8.8E-33 281.4 25.1 216 7-240 553-770 (926)
46 PHA02653 RNA helicase NPH-II; 100.0 8.7E-28 1.9E-32 270.4 23.7 220 7-246 273-520 (675)
47 PRK11664 ATP-dependent RNA hel 100.0 5.4E-28 1.2E-32 278.0 22.2 223 7-242 92-341 (812)
48 COG0514 RecQ Superfamily II DN 100.0 3.8E-28 8.3E-33 265.7 19.4 235 7-254 106-351 (590)
49 TIGR01587 cas3_core CRISPR-ass 100.0 5.4E-28 1.2E-32 255.4 19.1 224 8-239 94-335 (358)
50 PRK10689 transcription-repair 100.0 2E-27 4.3E-32 280.9 25.9 214 7-239 702-918 (1147)
51 KOG0329 ATP-dependent RNA heli 100.0 2.7E-29 5.9E-34 244.1 7.3 206 7-251 160-367 (387)
52 PRK02362 ski2-like helicase; P 100.0 5.2E-27 1.1E-31 270.0 26.6 229 6-241 111-398 (737)
53 PRK10917 ATP-dependent DNA hel 100.0 2.5E-27 5.4E-32 269.9 22.9 271 7-296 363-659 (681)
54 PRK00254 ski2-like helicase; P 99.9 2E-26 4.4E-31 264.5 26.6 236 6-248 112-397 (720)
55 PRK11131 ATP-dependent RNA hel 99.9 1.4E-26 3.1E-31 271.6 23.1 223 7-243 162-414 (1294)
56 TIGR00643 recG ATP-dependent D 99.9 5.2E-26 1.1E-30 257.3 23.4 214 6-237 336-563 (630)
57 PRK01172 ski2-like helicase; P 99.9 1.2E-25 2.5E-30 256.7 24.7 242 6-256 109-396 (674)
58 KOG0349 Putative DEAD-box RNA 99.9 2.7E-26 5.8E-31 236.5 12.2 232 6-241 337-616 (725)
59 TIGR01967 DEAH_box_HrpA ATP-de 99.9 1.1E-24 2.5E-29 256.4 22.4 222 7-242 155-406 (1283)
60 PRK09401 reverse gyrase; Revie 99.9 3.8E-25 8.3E-30 262.2 18.5 201 7-226 178-430 (1176)
61 COG1201 Lhr Lhr-like helicases 99.9 5.9E-24 1.3E-28 240.3 23.4 260 7-280 122-405 (814)
62 TIGR03158 cas3_cyano CRISPR-as 99.9 2.2E-23 4.9E-28 220.8 22.0 209 7-225 112-357 (357)
63 PHA02558 uvsW UvsW helicase; P 99.9 2.1E-23 4.5E-28 230.3 20.0 219 8-237 201-449 (501)
64 PRK14701 reverse gyrase; Provi 99.9 6.4E-24 1.4E-28 256.8 17.1 228 7-251 177-467 (1638)
65 TIGR01054 rgy reverse gyrase. 99.9 2.3E-23 5E-28 247.3 21.5 186 7-211 177-408 (1171)
66 PRK09200 preprotein translocas 99.9 2.8E-23 6E-28 235.8 18.5 129 111-242 406-543 (790)
67 TIGR03714 secA2 accessory Sec 99.9 1.3E-22 2.8E-27 228.5 19.1 129 110-243 401-540 (762)
68 PRK04914 ATP-dependent helicas 99.9 4.3E-22 9.2E-27 230.9 23.8 160 117-278 479-646 (956)
69 PRK13766 Hef nuclease; Provisi 99.9 6.5E-22 1.4E-26 229.3 25.1 122 117-242 347-481 (773)
70 COG1111 MPH1 ERCC4-like helica 99.9 6E-22 1.3E-26 209.4 21.4 124 118-243 349-484 (542)
71 KOG0351 ATP-dependent DNA heli 99.9 3.7E-22 7.9E-27 229.8 19.7 236 8-252 356-604 (941)
72 PRK12898 secA preprotein trans 99.9 1E-21 2.2E-26 218.9 20.3 200 35-243 356-589 (656)
73 COG1202 Superfamily II helicas 99.9 3.8E-22 8.3E-27 212.1 15.3 219 8-240 315-553 (830)
74 KOG0352 ATP-dependent DNA heli 99.9 8.8E-22 1.9E-26 203.2 15.7 232 8-251 113-373 (641)
75 TIGR00963 secA preprotein tran 99.9 2.1E-21 4.5E-26 217.7 18.7 126 113-243 385-520 (745)
76 COG1204 Superfamily II helicas 99.9 9.4E-21 2E-25 216.3 20.1 243 4-251 118-420 (766)
77 TIGR00603 rad25 DNA repair hel 99.8 3.7E-20 8E-25 208.7 20.7 223 8-243 343-610 (732)
78 TIGR00595 priA primosomal prot 99.8 1.1E-19 2.4E-24 200.3 20.0 229 6-248 74-389 (505)
79 PRK05580 primosome assembly pr 99.8 3.1E-19 6.7E-24 203.3 20.5 231 6-249 239-558 (679)
80 PRK09694 helicase Cas3; Provis 99.8 7.3E-19 1.6E-23 202.9 21.8 216 9-229 411-664 (878)
81 KOG0354 DEAD-box like helicase 99.8 1.2E-18 2.5E-23 193.7 20.5 109 131-242 413-531 (746)
82 TIGR00631 uvrb excinuclease AB 99.8 7.2E-19 1.6E-23 198.7 19.0 134 114-251 423-564 (655)
83 COG1200 RecG RecG-like helicas 99.8 4.9E-18 1.1E-22 186.5 22.7 273 5-296 362-661 (677)
84 COG1205 Distinct helicase fami 99.8 1.7E-18 3.7E-23 200.2 20.0 276 5-286 164-474 (851)
85 PRK05298 excinuclease ABC subu 99.8 2.8E-18 6.1E-23 194.6 17.4 128 115-246 428-563 (652)
86 KOG0947 Cytoplasmic exosomal R 99.8 8.6E-18 1.9E-22 187.2 20.4 236 8-248 379-733 (1248)
87 cd00079 HELICc Helicase superf 99.8 1E-17 2.3E-22 149.8 14.1 126 107-236 3-131 (131)
88 KOG0952 DNA/RNA helicase MER3/ 99.8 1.4E-17 3.1E-22 187.3 17.9 242 6-255 209-506 (1230)
89 PRK12906 secA preprotein trans 99.7 2.7E-17 5.8E-22 186.3 18.2 203 33-242 321-555 (796)
90 KOG0948 Nuclear exosomal RNA h 99.7 4.7E-18 1E-22 185.3 11.2 234 8-248 211-548 (1041)
91 PRK12900 secA preprotein trans 99.7 3.8E-17 8.2E-22 186.3 18.6 202 33-243 479-714 (1025)
92 KOG0353 ATP-dependent DNA heli 99.7 3.7E-17 8E-22 167.0 14.6 236 7-248 185-475 (695)
93 COG1643 HrpA HrpA-like helicas 99.7 7.1E-17 1.5E-21 184.4 16.0 226 4-241 135-388 (845)
94 PRK12904 preprotein translocas 99.7 1.9E-16 4.1E-21 180.1 19.1 127 112-242 409-575 (830)
95 COG1197 Mfd Transcription-repa 99.7 2.5E-16 5.5E-21 181.4 19.8 216 5-240 694-913 (1139)
96 COG4098 comFA Superfamily II D 99.7 2.7E-15 5.8E-20 152.4 21.7 228 8-249 185-425 (441)
97 KOG0951 RNA helicase BRR2, DEA 99.7 3.5E-16 7.6E-21 178.1 15.9 246 5-257 408-719 (1674)
98 COG4581 Superfamily II RNA hel 99.7 1.1E-15 2.3E-20 176.1 19.0 228 7-241 204-538 (1041)
99 KOG0922 DEAH-box RNA helicase 99.7 1.3E-15 2.9E-20 166.1 18.3 223 7-242 139-392 (674)
100 PRK13104 secA preprotein trans 99.7 1.1E-15 2.4E-20 174.1 17.8 128 112-242 423-589 (896)
101 COG1061 SSL2 DNA or RNA helica 99.7 1.1E-15 2.4E-20 166.4 16.8 207 10-227 124-376 (442)
102 KOG0950 DNA polymerase theta/e 99.7 1.3E-15 2.9E-20 170.9 17.2 238 7-253 314-624 (1008)
103 COG1203 CRISPR-associated heli 99.7 6.2E-16 1.3E-20 177.9 14.9 233 9-248 311-558 (733)
104 PF00271 Helicase_C: Helicase 99.7 2.7E-16 5.9E-21 129.6 8.5 72 156-228 6-78 (78)
105 PRK11448 hsdR type I restricti 99.6 6.4E-15 1.4E-19 174.7 20.8 213 8-229 511-802 (1123)
106 PLN03142 Probable chromatin-re 99.6 2.6E-14 5.7E-19 167.1 20.6 129 118-249 472-610 (1033)
107 KOG0923 mRNA splicing factor A 99.6 6.9E-14 1.5E-18 151.6 17.8 231 7-252 354-616 (902)
108 PF13959 DUF4217: Domain of un 99.5 1.2E-14 2.6E-19 116.4 6.8 64 267-330 1-65 (65)
109 smart00490 HELICc helicase sup 99.5 4.3E-14 9.2E-19 115.9 8.2 80 146-228 2-82 (82)
110 COG0556 UvrB Helicase subunit 99.5 4.1E-13 8.9E-18 143.3 16.8 171 64-248 386-565 (663)
111 KOG0920 ATP-dependent RNA heli 99.5 2.4E-13 5.3E-18 155.4 15.5 234 3-243 259-547 (924)
112 KOG0924 mRNA splicing factor A 99.5 5.6E-13 1.2E-17 144.9 13.8 221 8-240 445-697 (1042)
113 COG1198 PriA Primosomal protei 99.4 7.4E-12 1.6E-16 141.7 18.7 237 1-250 289-613 (730)
114 PRK13107 preprotein translocas 99.4 6.2E-12 1.3E-16 143.6 17.6 201 35-242 332-593 (908)
115 KOG4150 Predicted ATP-dependen 99.4 1.2E-11 2.6E-16 132.3 17.7 285 8-297 384-701 (1034)
116 KOG0926 DEAH-box RNA helicase 99.4 1.5E-12 3.2E-17 143.7 9.6 224 3-239 344-703 (1172)
117 COG1110 Reverse gyrase [DNA re 99.3 1.1E-10 2.4E-15 132.6 18.0 189 3-211 176-416 (1187)
118 KOG0949 Predicted helicase, DE 99.2 2.2E-10 4.8E-15 129.0 14.7 80 160-241 965-1049(1330)
119 PF06862 DUF1253: Protein of u 99.2 2.4E-09 5.2E-14 115.3 22.0 239 7-249 130-424 (442)
120 COG4096 HsdR Type I site-speci 99.2 1.8E-10 3.9E-15 129.1 13.6 212 7-227 255-525 (875)
121 KOG0385 Chromatin remodeling c 99.1 1.6E-09 3.5E-14 119.9 18.7 141 118-262 472-622 (971)
122 KOG0925 mRNA splicing factor A 99.1 5.7E-10 1.2E-14 118.2 14.0 210 13-240 141-387 (699)
123 cd00268 DEADc DEAD-box helicas 99.1 2E-10 4.4E-15 111.3 8.8 85 7-92 118-202 (203)
124 PRK12903 secA preprotein trans 99.1 3.7E-09 8E-14 120.3 17.8 200 33-242 307-541 (925)
125 KOG0384 Chromodomain-helicase 99.0 1.7E-09 3.8E-14 124.6 13.3 118 131-251 699-824 (1373)
126 TIGR00348 hsdR type I site-spe 99.0 1.2E-08 2.7E-13 116.7 18.9 95 131-227 514-634 (667)
127 TIGR02562 cas3_yersinia CRISPR 99.0 1.6E-08 3.4E-13 117.2 18.5 217 8-229 562-881 (1110)
128 KOG0953 Mitochondrial RNA heli 98.9 7.2E-09 1.6E-13 111.6 12.8 222 33-281 275-513 (700)
129 PRK12326 preprotein translocas 98.9 4.2E-08 9.1E-13 110.4 19.1 202 35-243 310-550 (764)
130 PF00270 DEAD: DEAD/DEAH box h 98.9 3.5E-09 7.7E-14 99.0 7.4 73 7-80 94-168 (169)
131 PRK12899 secA preprotein trans 98.9 5.5E-08 1.2E-12 112.0 17.2 200 35-242 451-683 (970)
132 KOG0390 DNA repair protein, SN 98.8 1.4E-07 3E-12 107.1 19.2 100 135-236 598-701 (776)
133 KOG1123 RNA polymerase II tran 98.8 3.8E-08 8.2E-13 104.8 12.7 209 7-229 389-636 (776)
134 PRK12901 secA preprotein trans 98.8 1.3E-07 2.8E-12 109.4 17.7 201 33-242 509-743 (1112)
135 KOG0387 Transcription-coupled 98.8 1.5E-07 3.3E-12 105.1 17.4 124 117-242 530-660 (923)
136 PRK13103 secA preprotein trans 98.7 2.9E-07 6.2E-12 106.0 17.5 200 35-242 332-593 (913)
137 TIGR01407 dinG_rel DnaQ family 98.7 2.1E-07 4.6E-12 109.5 16.1 107 130-240 673-814 (850)
138 KOG0392 SNF2 family DNA-depend 98.6 7E-07 1.5E-11 103.5 15.1 124 118-242 1311-1456(1549)
139 CHL00122 secA preprotein trans 98.6 1.5E-06 3.3E-11 99.7 16.8 161 33-199 305-491 (870)
140 KOG0951 RNA helicase BRR2, DEA 98.5 1.4E-06 3E-11 101.3 14.3 232 7-255 1233-1509(1674)
141 PRK14873 primosome assembly pr 98.5 4.1E-06 8.8E-11 95.6 17.7 220 3-248 235-546 (665)
142 KOG1000 Chromatin remodeling p 98.4 2.3E-06 5.1E-11 91.4 11.8 98 131-231 492-592 (689)
143 PRK12902 secA preprotein trans 98.4 9E-06 2E-10 93.5 16.3 158 35-198 322-505 (939)
144 PRK08074 bifunctional ATP-depe 98.3 1E-05 2.2E-10 96.2 16.2 108 130-240 751-893 (928)
145 KOG2340 Uncharacterized conser 98.3 3.7E-06 8E-11 90.6 10.3 238 7-248 384-676 (698)
146 smart00487 DEXDc DEAD-like hel 98.3 2.3E-06 5E-11 80.5 7.7 86 9-95 106-191 (201)
147 COG4889 Predicted helicase [Ge 98.2 1.3E-06 2.8E-11 98.3 3.9 96 132-228 461-573 (1518)
148 COG1199 DinG Rad3-related DNA 98.1 3.6E-05 7.7E-10 88.3 13.9 113 121-239 470-616 (654)
149 TIGR00596 rad1 DNA repair prot 98.1 8.8E-05 1.9E-09 86.3 16.7 41 7-48 6-46 (814)
150 PRK07246 bifunctional ATP-depe 98.0 0.00011 2.4E-09 86.3 15.9 105 130-240 646-783 (820)
151 PF13307 Helicase_C_2: Helicas 98.0 1.8E-05 4E-10 75.1 7.2 110 124-239 3-149 (167)
152 KOG0386 Chromatin remodeling c 97.9 4E-05 8.7E-10 88.0 9.3 117 117-236 710-832 (1157)
153 TIGR00604 rad3 DNA repair heli 97.8 0.00041 8.9E-09 80.4 16.8 80 130-212 521-615 (705)
154 PRK11747 dinG ATP-dependent DN 97.8 0.00035 7.6E-09 80.8 15.6 75 131-211 534-615 (697)
155 KOG0389 SNF2 family DNA-depend 97.8 0.00011 2.4E-09 82.8 10.6 138 117-257 761-906 (941)
156 cd00046 DEXDc DEAD-like helica 97.8 5.2E-05 1.1E-09 67.0 6.7 68 6-74 77-144 (144)
157 PF02399 Herpes_ori_bp: Origin 97.7 0.00049 1.1E-08 78.9 14.3 215 9-240 122-388 (824)
158 COG0653 SecA Preprotein transl 97.7 0.00027 5.8E-09 81.3 12.2 125 113-241 409-546 (822)
159 COG0553 HepA Superfamily II DN 97.7 0.00025 5.4E-09 83.3 11.9 122 117-241 692-823 (866)
160 KOG0388 SNF2 family DNA-depend 97.6 0.00022 4.7E-09 79.4 9.8 128 118-248 1029-1164(1185)
161 KOG0391 SNF2 family DNA-depend 97.6 0.00039 8.5E-09 80.9 10.9 124 116-247 1262-1396(1958)
162 TIGR03117 cas_csf4 CRISPR-asso 97.4 0.0033 7.2E-08 71.5 15.9 88 120-212 460-561 (636)
163 KOG1015 Transcription regulato 97.4 0.00038 8.2E-09 79.6 8.0 120 116-236 1125-1271(1567)
164 KOG0921 Dosage compensation co 97.1 0.0013 2.7E-08 75.3 8.0 108 130-239 642-773 (1282)
165 KOG1002 Nucleotide excision re 96.8 0.0055 1.2E-07 66.3 9.0 131 118-251 621-761 (791)
166 PF04851 ResIII: Type III rest 96.4 0.0032 6.9E-08 59.1 4.1 64 7-75 110-183 (184)
167 smart00492 HELICc3 helicase su 96.2 0.027 5.8E-07 52.2 8.8 46 166-212 30-79 (141)
168 smart00491 HELICc2 helicase su 95.9 0.03 6.6E-07 51.9 7.9 41 171-212 32-80 (142)
169 PRK12899 secA preprotein trans 95.8 0.0051 1.1E-07 71.9 2.8 39 8-47 183-229 (970)
170 COG0610 Type I site-specific r 95.3 0.36 7.7E-06 58.1 15.6 105 131-238 519-651 (962)
171 PF07652 Flavi_DEAD: Flaviviru 95.2 0.071 1.5E-06 49.5 7.3 68 7-78 71-140 (148)
172 KOG4439 RNA polymerase II tran 95.1 0.099 2.1E-06 59.1 9.6 115 118-235 730-851 (901)
173 PF14617 CMS1: U3-containing 9 94.8 0.031 6.7E-07 56.7 4.2 36 7-43 176-211 (252)
174 KOG1016 Predicted DNA helicase 94.4 0.091 2E-06 59.8 7.1 107 131-238 719-845 (1387)
175 PF13871 Helicase_C_4: Helicas 94.0 0.18 3.9E-06 51.9 7.9 76 174-250 52-140 (278)
176 PRK10917 ATP-dependent DNA hel 94.0 0.24 5.2E-06 57.5 9.8 78 131-209 310-391 (681)
177 PRK05580 primosome assembly pr 92.7 0.64 1.4E-05 54.0 10.5 91 117-210 174-267 (679)
178 PF00176 SNF2_N: SNF2 family N 92.6 0.19 4.1E-06 51.1 5.5 64 6-75 105-173 (299)
179 COG1110 Reverse gyrase [DNA re 92.2 0.46 9.9E-06 56.1 8.3 76 117-192 111-191 (1187)
180 TIGR00643 recG ATP-dependent D 92.0 0.62 1.3E-05 53.6 9.3 77 131-208 284-364 (630)
181 TIGR00595 priA primosomal prot 91.9 0.86 1.9E-05 51.0 10.0 76 131-209 25-101 (505)
182 PRK14873 primosome assembly pr 91.3 0.88 1.9E-05 52.6 9.4 93 116-210 171-266 (665)
183 KOG0701 dsRNA-specific nucleas 91.1 0.19 4E-06 62.3 3.9 93 134-228 295-399 (1606)
184 TIGR00580 mfd transcription-re 90.9 1 2.3E-05 53.9 9.9 78 131-209 500-581 (926)
185 KOG0952 DNA/RNA helicase MER3/ 90.9 0.071 1.5E-06 62.6 0.1 142 6-153 1018-1175(1230)
186 PRK10689 transcription-repair 90.6 1.2 2.6E-05 54.6 10.2 77 130-207 648-728 (1147)
187 COG0513 SrmB Superfamily II DN 89.5 1.2 2.5E-05 50.1 8.3 70 134-207 102-180 (513)
188 PRK13107 preprotein translocas 89.4 0.16 3.5E-06 59.6 1.4 41 7-47 170-216 (908)
189 PF13872 AAA_34: P-loop contai 88.9 0.47 1E-05 49.3 4.2 73 8-81 136-227 (303)
190 KOG1133 Helicase of the DEAD s 88.1 14 0.00031 42.4 15.3 93 116-212 611-720 (821)
191 PRK11634 ATP-dependent RNA hel 87.6 2.1 4.5E-05 49.3 8.9 73 131-207 74-155 (629)
192 KOG0331 ATP-dependent RNA heli 87.5 12 0.00025 42.0 14.1 188 131-332 165-373 (519)
193 cd00268 DEADc DEAD-box helicas 87.3 3.9 8.4E-05 39.2 9.4 74 130-207 68-149 (203)
194 PF10593 Z1: Z1 domain; Inter 86.3 1.8 3.9E-05 43.7 6.6 87 157-249 110-202 (239)
195 PRK11776 ATP-dependent RNA hel 85.1 3.2 6.9E-05 45.7 8.5 76 131-210 72-156 (460)
196 COG1198 PriA Primosomal protei 84.6 2.5 5.4E-05 49.2 7.4 92 113-207 225-319 (730)
197 KOG3089 Predicted DEAD-box-con 82.9 1.2 2.6E-05 44.0 3.4 33 7-40 195-227 (271)
198 TIGR01054 rgy reverse gyrase. 82.7 3.8 8.3E-05 50.5 8.4 61 131-191 121-187 (1171)
199 TIGR03117 cas_csf4 CRISPR-asso 82.6 1.3 2.8E-05 50.8 4.1 42 6-48 180-221 (636)
200 KOG0343 RNA Helicase [RNA proc 82.5 3.8 8.2E-05 45.8 7.3 37 368-409 566-602 (758)
201 PF00270 DEAD: DEAD/DEAH box h 82.4 16 0.00035 33.4 10.8 74 130-207 43-125 (169)
202 PRK14701 reverse gyrase; Provi 81.8 4.6 9.9E-05 51.4 8.7 62 130-191 121-187 (1638)
203 smart00489 DEXDc3 DEAD-like he 81.5 0.96 2.1E-05 46.9 2.4 44 4-48 207-251 (289)
204 smart00488 DEXDc2 DEAD-like he 81.5 0.96 2.1E-05 46.9 2.4 44 4-48 207-251 (289)
205 KOG0389 SNF2 family DNA-depend 80.8 6.3 0.00014 45.8 8.5 66 127-195 444-512 (941)
206 KOG0339 ATP-dependent RNA heli 80.6 16 0.00036 40.6 11.2 179 131-325 295-493 (731)
207 KOG0347 RNA helicase [RNA proc 79.3 3.6 7.8E-05 45.9 5.8 54 134-190 266-321 (731)
208 PF06733 DEAD_2: DEAD_2; Inte 78.9 0.7 1.5E-05 43.8 0.3 43 5-48 116-160 (174)
209 COG1200 RecG RecG-like helicas 77.0 12 0.00025 43.0 9.2 76 131-207 311-390 (677)
210 PRK11192 ATP-dependent RNA hel 76.4 9 0.0002 41.7 8.1 75 131-209 73-155 (434)
211 TIGR00631 uvrb excinuclease AB 75.1 22 0.00047 41.3 11.0 114 110-225 34-177 (655)
212 KOG1001 Helicase-like transcri 73.0 0.66 1.4E-05 53.5 -1.9 99 133-234 541-642 (674)
213 PRK04537 ATP-dependent RNA hel 72.9 9.9 0.00021 43.3 7.5 72 132-207 85-165 (572)
214 COG3421 Uncharacterized protei 72.2 27 0.00058 39.8 10.2 71 7-77 80-168 (812)
215 KOG0391 SNF2 family DNA-depend 71.5 4 8.6E-05 49.2 3.9 68 7-80 714-782 (1958)
216 PRK11747 dinG ATP-dependent DN 70.5 3.6 7.9E-05 47.9 3.4 44 5-48 216-261 (697)
217 PRK04837 ATP-dependent RNA hel 70.5 16 0.00034 39.7 8.2 74 132-209 84-165 (423)
218 TIGR01407 dinG_rel DnaQ family 70.1 3.6 7.9E-05 49.1 3.4 43 5-48 413-455 (850)
219 COG1197 Mfd Transcription-repa 69.4 23 0.0005 43.1 9.6 78 129-207 641-722 (1139)
220 PRK01297 ATP-dependent RNA hel 67.3 29 0.00063 38.4 9.6 72 132-207 163-243 (475)
221 PF02463 SMC_N: RecF/RecN/SMC 67.3 7.7 0.00017 37.9 4.5 42 32-73 157-198 (220)
222 PRK10590 ATP-dependent RNA hel 66.7 21 0.00045 39.3 8.3 73 132-208 76-156 (456)
223 PRK13766 Hef nuclease; Provisi 66.3 30 0.00066 40.7 10.0 78 129-211 56-141 (773)
224 COG3973 Superfamily I DNA and 65.7 40 0.00088 38.5 10.0 75 117-211 641-717 (747)
225 PRK07246 bifunctional ATP-depe 65.5 5.4 0.00012 47.4 3.5 42 5-48 410-451 (820)
226 PF09848 DUF2075: Uncharacteri 65.4 6.7 0.00014 41.7 3.9 30 31-60 81-117 (352)
227 cd06533 Glyco_transf_WecG_TagA 64.6 51 0.0011 31.3 9.4 70 117-187 33-104 (171)
228 PRK08074 bifunctional ATP-depe 64.3 5.4 0.00012 48.1 3.3 43 5-48 428-470 (928)
229 TIGR00614 recQ_fam ATP-depende 63.6 20 0.00044 39.6 7.4 59 131-191 51-110 (470)
230 PRK09401 reverse gyrase; Revie 63.2 32 0.00069 42.7 9.5 76 130-207 122-207 (1176)
231 KOG0338 ATP-dependent RNA heli 63.2 66 0.0014 36.1 10.8 72 131-206 252-332 (691)
232 KOG1513 Nuclear helicase MOP-3 63.0 6.4 0.00014 45.7 3.3 62 176-238 850-921 (1300)
233 cd00046 DEXDc DEAD-like helica 63.0 37 0.00081 29.0 7.7 59 130-191 29-88 (144)
234 PF03808 Glyco_tran_WecB: Glyc 61.7 59 0.0013 30.8 9.3 70 117-187 35-106 (172)
235 TIGR01389 recQ ATP-dependent D 61.4 24 0.00052 40.3 7.7 58 131-190 53-111 (591)
236 TIGR00696 wecB_tagA_cpsF bacte 60.2 71 0.0015 30.7 9.6 56 131-186 48-104 (177)
237 KOG0330 ATP-dependent RNA heli 59.7 36 0.00078 36.8 7.9 100 118-221 116-232 (476)
238 smart00450 RHOD Rhodanese Homo 59.4 16 0.00034 29.8 4.4 39 129-169 54-93 (100)
239 PF13401 AAA_22: AAA domain; P 58.8 17 0.00037 31.9 4.8 36 35-73 89-124 (131)
240 TIGR00963 secA preprotein tran 58.2 39 0.00085 39.7 8.6 63 124-191 90-154 (745)
241 PTZ00110 helicase; Provisional 58.1 29 0.00062 39.3 7.5 74 132-209 204-285 (545)
242 KOG0989 Replication factor C, 57.9 14 0.00031 38.7 4.5 47 29-76 125-171 (346)
243 cd01524 RHOD_Pyr_redox Member 57.1 15 0.00033 30.4 3.9 37 131-169 51-87 (90)
244 smart00487 DEXDc DEAD-like hel 56.8 56 0.0012 29.9 8.2 72 131-207 54-135 (201)
245 PRK05642 DNA replication initi 56.6 17 0.00036 36.4 4.8 68 8-76 73-141 (234)
246 TIGR03817 DECH_helic helicase/ 56.1 34 0.00073 40.4 7.8 92 129-225 79-188 (742)
247 COG1922 WecG Teichoic acid bio 54.4 1.4E+02 0.0031 30.5 10.9 56 132-187 109-166 (253)
248 KOG1132 Helicase of the DEAD s 54.2 1.8E+02 0.0039 34.7 12.9 83 128-212 558-656 (945)
249 PRK15483 type III restriction- 54.1 13 0.00029 44.6 4.1 67 183-250 502-578 (986)
250 PRK05298 excinuclease ABC subu 54.1 1E+02 0.0023 35.7 11.3 111 113-225 40-180 (652)
251 COG0052 RpsB Ribosomal protein 53.1 50 0.0011 33.5 7.3 38 117-154 48-86 (252)
252 KOG0385 Chromatin remodeling c 52.1 53 0.0012 38.5 8.1 58 130-190 216-275 (971)
253 COG1199 DinG Rad3-related DNA 51.8 13 0.00028 42.8 3.5 43 7-49 193-236 (654)
254 PRK12902 secA preprotein trans 51.6 8.7 0.00019 45.6 2.0 44 3-46 169-218 (939)
255 PLN03025 replication factor C 50.3 39 0.00084 35.3 6.5 39 32-71 98-136 (319)
256 PHA02544 44 clamp loader, smal 50.2 28 0.0006 36.0 5.4 40 32-71 99-138 (316)
257 PRK12323 DNA polymerase III su 50.1 25 0.00054 40.8 5.2 40 32-72 123-162 (700)
258 PRK06893 DNA replication initi 49.8 17 0.00037 36.1 3.6 47 31-77 89-137 (229)
259 KOG0329 ATP-dependent RNA heli 49.7 56 0.0012 33.4 7.0 89 132-224 111-213 (387)
260 PF07517 SecA_DEAD: SecA DEAD- 49.7 15 0.00032 37.8 3.1 38 9-46 167-210 (266)
261 cd01523 RHOD_Lact_B Member of 49.6 18 0.0004 30.5 3.3 38 130-169 60-97 (100)
262 COG4098 comFA Superfamily II D 49.6 1E+02 0.0022 33.0 9.2 127 111-251 122-254 (441)
263 PF15586 Imm47: Immunity prote 47.9 33 0.00072 30.7 4.7 50 8-62 44-93 (116)
264 PRK06526 transposase; Provisio 46.5 34 0.00075 34.7 5.2 71 7-77 125-204 (254)
265 PRK07764 DNA polymerase III su 46.4 20 0.00043 42.7 3.9 39 32-71 119-157 (824)
266 KOG0348 ATP-dependent RNA heli 46.1 33 0.00072 38.5 5.2 88 131-223 211-317 (708)
267 cd00561 CobA_CobO_BtuR ATP:cor 45.4 33 0.00072 32.4 4.6 54 31-84 93-148 (159)
268 KOG0350 DEAD-box ATP-dependent 45.0 62 0.0013 36.2 7.0 73 132-207 216-301 (620)
269 cd01518 RHOD_YceA Member of th 43.7 41 0.0009 28.3 4.6 39 129-169 59-98 (101)
270 TIGR00604 rad3 DNA repair heli 43.5 12 0.00027 43.6 1.7 44 4-48 191-235 (705)
271 PRK11057 ATP-dependent DNA hel 43.5 65 0.0014 37.0 7.5 58 131-190 65-123 (607)
272 PRK08727 hypothetical protein; 43.0 35 0.00076 34.0 4.6 69 8-77 69-139 (233)
273 PF05621 TniB: Bacterial TniB 42.9 21 0.00046 37.3 3.1 36 32-67 144-181 (302)
274 cd01529 4RHOD_Repeats Member o 42.5 42 0.0009 28.0 4.4 37 130-168 55-92 (96)
275 PRK04296 thymidine kinase; Pro 42.3 48 0.001 31.9 5.3 54 13-74 62-115 (190)
276 PLN00206 DEAD-box ATP-dependen 42.3 72 0.0016 35.8 7.5 74 131-208 196-277 (518)
277 cd01449 TST_Repeat_2 Thiosulfa 42.2 36 0.00079 29.4 4.1 37 130-168 77-114 (118)
278 PRK09751 putative ATP-dependen 42.0 77 0.0017 40.3 8.2 75 131-209 37-132 (1490)
279 PF13086 AAA_11: AAA domain; P 41.2 9.6 0.00021 36.7 0.2 38 5-47 167-206 (236)
280 PRK13104 secA preprotein trans 40.7 1.1E+02 0.0024 36.8 8.7 60 127-191 119-180 (896)
281 PRK07003 DNA polymerase III su 40.3 29 0.00063 40.9 3.9 39 32-71 118-156 (830)
282 PRK12898 secA preprotein trans 39.6 1E+02 0.0023 35.8 8.2 66 127-198 140-207 (656)
283 COG1111 MPH1 ERCC4-like helica 39.5 1.1E+02 0.0023 34.3 7.9 83 123-211 51-141 (542)
284 TIGR00678 holB DNA polymerase 39.5 43 0.00092 31.8 4.5 37 32-69 95-131 (188)
285 PRK14958 DNA polymerase III su 38.9 36 0.00079 38.2 4.4 39 32-71 118-156 (509)
286 cd01526 RHOD_ThiF Member of th 38.8 33 0.00072 30.3 3.3 38 130-169 71-110 (122)
287 PRK07940 DNA polymerase III su 38.4 70 0.0015 34.7 6.4 43 32-76 116-158 (394)
288 PF13177 DNA_pol3_delta2: DNA 38.0 38 0.00083 31.7 3.8 43 32-75 101-143 (162)
289 TIGR00708 cobA cob(I)alamin ad 37.9 38 0.00083 32.5 3.8 53 32-84 96-150 (173)
290 PF13173 AAA_14: AAA domain 37.5 40 0.00087 29.9 3.7 38 33-73 61-98 (128)
291 KOG0345 ATP-dependent RNA heli 37.4 81 0.0017 35.0 6.4 71 133-207 81-163 (567)
292 KOG0991 Replication factor C, 37.2 58 0.0013 33.1 4.9 45 31-76 111-155 (333)
293 PRK12422 chromosomal replicati 37.0 66 0.0014 35.6 5.9 73 8-80 169-251 (445)
294 PRK09112 DNA polymerase III su 36.9 53 0.0011 35.1 5.1 39 32-71 140-178 (351)
295 PF12846 AAA_10: AAA-like doma 36.5 30 0.00064 34.8 3.0 44 32-76 219-263 (304)
296 cd01520 RHOD_YbbB Member of th 36.4 40 0.00086 30.1 3.5 38 130-169 85-123 (128)
297 KOG0335 ATP-dependent RNA heli 36.2 72 0.0016 35.5 6.0 70 132-206 153-231 (482)
298 COG3587 Restriction endonuclea 35.9 57 0.0012 38.7 5.2 68 182-250 483-563 (985)
299 PRK09111 DNA polymerase III su 35.5 81 0.0018 36.3 6.5 39 32-71 131-169 (598)
300 cd01534 4RHOD_Repeat_3 Member 35.3 43 0.00093 27.9 3.3 36 131-168 56-91 (95)
301 PRK14952 DNA polymerase III su 35.1 70 0.0015 36.7 5.9 42 32-75 117-158 (584)
302 cd01525 RHOD_Kc Member of the 35.1 56 0.0012 27.5 4.1 36 131-168 65-101 (105)
303 cd01448 TST_Repeat_1 Thiosulfa 35.0 54 0.0012 28.6 4.1 38 130-169 78-117 (122)
304 COG1196 Smc Chromosome segrega 34.8 36 0.00078 42.3 3.8 67 7-73 1048-1128(1163)
305 cd01533 4RHOD_Repeat_2 Member 34.7 72 0.0016 27.3 4.8 37 131-169 66-104 (109)
306 PTZ00424 helicase 45; Provisio 34.6 1.7E+02 0.0037 31.1 8.6 75 131-209 96-178 (401)
307 cd01519 RHOD_HSP67B2 Member of 34.4 45 0.00096 28.2 3.3 36 131-168 66-102 (106)
308 TIGR03420 DnaA_homol_Hda DnaA 34.2 43 0.00093 32.5 3.6 44 32-75 89-133 (226)
309 PHA03371 circ protein; Provisi 34.1 33 0.00072 34.2 2.7 46 191-237 29-88 (240)
310 PRK05986 cob(I)alamin adenolsy 33.6 54 0.0012 32.0 4.1 54 31-84 113-168 (191)
311 KOG0298 DEAD box-containing he 33.5 62 0.0013 39.9 5.2 94 131-230 1221-1314(1394)
312 cd01444 GlpE_ST GlpE sulfurtra 33.5 58 0.0013 26.8 3.8 37 130-168 55-92 (96)
313 PRK07414 cob(I)yrinic acid a,c 33.5 49 0.0011 31.9 3.7 53 32-84 114-168 (178)
314 PRK07399 DNA polymerase III su 33.2 1.1E+02 0.0023 32.2 6.5 39 32-72 123-161 (314)
315 PRK07413 hypothetical protein; 33.1 1.8E+02 0.0039 31.6 8.3 53 32-84 124-178 (382)
316 PRK08084 DNA replication initi 33.0 39 0.00085 33.7 3.2 45 32-76 96-142 (235)
317 PRK04132 replication factor C 32.6 81 0.0018 37.8 6.0 37 33-70 630-666 (846)
318 PRK02362 ski2-like helicase; P 32.4 64 0.0014 37.9 5.2 73 130-209 66-145 (737)
319 PRK14969 DNA polymerase III su 32.4 64 0.0014 36.4 5.0 39 32-71 118-156 (527)
320 COG0497 RecN ATPase involved i 32.1 43 0.00093 37.9 3.5 41 33-73 453-493 (557)
321 PF10141 ssDNA-exonuc_C: Singl 32.0 94 0.002 30.2 5.5 82 200-325 50-131 (195)
322 PRK14086 dnaA chromosomal repl 31.6 73 0.0016 36.7 5.3 72 8-79 344-425 (617)
323 PRK14974 cell division protein 31.0 1E+02 0.0022 32.8 5.9 55 32-86 221-276 (336)
324 cd00158 RHOD Rhodanese Homolog 31.0 79 0.0017 25.2 4.2 39 129-168 48-86 (89)
325 PRK14961 DNA polymerase III su 30.9 73 0.0016 34.0 5.0 38 32-70 118-155 (363)
326 PRK08181 transposase; Validate 30.6 1.2E+02 0.0026 31.2 6.2 70 7-76 133-211 (269)
327 PF00004 AAA: ATPase family as 30.6 71 0.0015 27.6 4.1 16 34-49 59-74 (132)
328 PRK14088 dnaA chromosomal repl 30.6 86 0.0019 34.5 5.5 73 8-80 160-243 (440)
329 PF09805 Nop25: Nucleolar prot 30.5 1.6E+02 0.0035 27.1 6.5 9 414-422 10-18 (137)
330 cd01447 Polysulfide_ST Polysul 30.4 43 0.00094 28.0 2.6 37 131-169 61-98 (103)
331 cd01521 RHOD_PspE2 Member of t 30.4 64 0.0014 27.8 3.7 37 131-169 64-102 (110)
332 PRK00254 ski2-like helicase; P 30.2 1.4E+02 0.0029 35.1 7.4 72 131-209 68-146 (720)
333 cd01532 4RHOD_Repeat_1 Member 30.1 82 0.0018 26.1 4.2 36 131-168 50-88 (92)
334 PRK12904 preprotein translocas 30.0 1.6E+02 0.0036 35.1 7.9 65 121-190 112-178 (830)
335 cd01528 RHOD_2 Member of the R 29.9 64 0.0014 27.2 3.6 38 130-169 57-95 (101)
336 PRK09200 preprotein translocas 29.9 1.7E+02 0.0037 34.9 8.0 63 123-190 111-176 (790)
337 PRK14087 dnaA chromosomal repl 29.6 72 0.0016 35.3 4.8 72 7-78 170-253 (450)
338 PRK08451 DNA polymerase III su 29.5 60 0.0013 36.8 4.1 39 32-71 116-154 (535)
339 cd01527 RHOD_YgaP Member of th 29.5 70 0.0015 26.7 3.7 37 131-169 54-91 (99)
340 PF12683 DUF3798: Protein of u 29.4 1.4E+02 0.003 30.8 6.3 126 66-215 4-144 (275)
341 PLN03137 ATP-dependent DNA hel 29.0 1.5E+02 0.0032 36.8 7.4 58 131-190 500-560 (1195)
342 PRK06620 hypothetical protein; 28.9 69 0.0015 31.6 4.0 40 33-76 85-125 (214)
343 cd00009 AAA The AAA+ (ATPases 28.5 83 0.0018 27.0 4.2 30 31-61 82-111 (151)
344 PRK13767 ATP-dependent helicas 28.5 1.6E+02 0.0035 35.5 7.7 74 132-209 85-180 (876)
345 PF14617 CMS1: U3-containing 9 28.2 2E+02 0.0044 29.3 7.3 88 132-223 127-235 (252)
346 PRK14951 DNA polymerase III su 27.9 98 0.0021 35.7 5.6 43 32-76 123-165 (618)
347 PRK08116 hypothetical protein; 27.5 1.5E+02 0.0032 30.3 6.3 70 8-78 142-225 (268)
348 PRK00440 rfc replication facto 27.4 88 0.0019 32.0 4.8 38 33-71 102-139 (319)
349 PRK08903 DnaA regulatory inact 27.3 1.8E+02 0.0039 28.3 6.8 44 32-76 89-133 (227)
350 PRK04841 transcriptional regul 27.3 77 0.0017 37.7 4.8 42 35-76 123-164 (903)
351 PTZ00254 40S ribosomal protein 27.1 61 0.0013 33.0 3.3 38 117-154 56-93 (249)
352 COG2909 MalT ATP-dependent tra 27.0 81 0.0018 37.5 4.7 43 34-76 130-172 (894)
353 PRK10869 recombination and rep 26.6 86 0.0019 35.7 4.8 41 32-72 451-491 (553)
354 PRK14960 DNA polymerase III su 26.6 82 0.0018 36.7 4.6 39 32-71 117-155 (702)
355 PRK14964 DNA polymerase III su 26.4 1.2E+02 0.0026 34.1 5.7 38 32-70 115-152 (491)
356 PRK14957 DNA polymerase III su 26.3 88 0.0019 35.6 4.7 39 32-71 118-156 (546)
357 KOG2894 Uncharacterized conser 26.2 1.5E+02 0.0032 30.6 5.8 28 456-483 86-113 (331)
358 PRK12402 replication factor C 26.0 98 0.0021 32.0 4.8 39 32-71 124-162 (337)
359 PRK14965 DNA polymerase III su 25.9 1.2E+02 0.0026 34.7 5.8 39 32-71 118-156 (576)
360 PF02572 CobA_CobO_BtuR: ATP:c 25.9 74 0.0016 30.5 3.5 54 31-84 94-149 (172)
361 PRK07471 DNA polymerase III su 25.9 72 0.0016 34.3 3.8 41 32-73 140-180 (365)
362 PRK07994 DNA polymerase III su 25.8 81 0.0017 36.6 4.4 38 32-70 118-155 (647)
363 COG0553 HepA Superfamily II DN 25.7 44 0.00096 39.3 2.4 73 9-84 448-521 (866)
364 PF13304 AAA_21: AAA domain; P 25.5 95 0.0021 29.4 4.3 38 35-72 259-297 (303)
365 KOG1001 Helicase-like transcri 25.4 94 0.002 36.3 4.9 66 3-76 229-294 (674)
366 cd01445 TST_Repeats Thiosulfat 25.3 1.1E+02 0.0024 27.9 4.4 49 118-168 82-134 (138)
367 PRK14949 DNA polymerase III su 25.0 81 0.0018 38.0 4.2 43 32-76 118-160 (944)
368 PRK08691 DNA polymerase III su 24.7 1.1E+02 0.0024 35.8 5.3 39 32-71 118-156 (709)
369 PRK14955 DNA polymerase III su 24.6 1.4E+02 0.0029 32.4 5.7 40 32-73 126-165 (397)
370 COG4555 NatA ABC-type Na+ tran 24.5 1.4E+02 0.0031 29.8 5.1 53 31-83 149-201 (245)
371 KOG0342 ATP-dependent RNA heli 24.0 1.6E+02 0.0035 32.8 6.0 87 131-222 154-259 (543)
372 PRK14953 DNA polymerase III su 23.9 1.3E+02 0.0029 33.6 5.6 30 32-62 118-147 (486)
373 TIGR01448 recD_rel helicase, p 23.8 85 0.0018 37.0 4.2 37 33-73 416-452 (720)
374 COG1205 Distinct helicase fami 23.7 2.6E+02 0.0057 33.7 8.2 125 120-249 105-253 (851)
375 PF01637 Arch_ATPase: Archaeal 23.7 1E+02 0.0022 29.4 4.1 56 14-74 104-165 (234)
376 cd01120 RecA-like_NTPases RecA 23.6 68 0.0015 28.6 2.7 45 32-76 84-138 (165)
377 TIGR00824 EIIA-man PTS system, 23.3 2.7E+02 0.0058 24.6 6.4 75 9-84 2-78 (116)
378 KOG0990 Replication factor C, 23.2 63 0.0014 34.2 2.6 38 33-71 131-168 (360)
379 cd01535 4RHOD_Repeat_4 Member 23.1 2E+02 0.0044 26.4 5.8 37 131-169 49-86 (145)
380 PRK00149 dnaA chromosomal repl 23.0 67 0.0014 35.3 3.0 72 8-79 178-259 (450)
381 PRK13103 secA preprotein trans 22.9 3.3E+02 0.0071 33.0 8.6 69 119-192 111-181 (913)
382 PRK05320 rhodanese superfamily 22.8 1.3E+02 0.0029 30.5 4.9 39 130-170 174-213 (257)
383 TIGR00634 recN DNA repair prot 22.7 1.1E+02 0.0023 34.9 4.6 84 33-127 462-545 (563)
384 cd03239 ABC_SMC_head The struc 22.6 1.2E+02 0.0026 28.9 4.3 42 32-73 115-157 (178)
385 KOG1513 Nuclear helicase MOP-3 22.4 95 0.0021 36.7 4.0 51 35-86 407-469 (1300)
386 PRK15483 type III restriction- 22.3 1.7E+02 0.0037 35.6 6.3 65 8-76 162-240 (986)
387 PHA03368 DNA packaging termina 22.2 80 0.0017 36.7 3.4 44 29-76 348-392 (738)
388 KOG0352 ATP-dependent DNA heli 22.2 1.3E+02 0.0029 33.1 4.8 57 132-190 62-121 (641)
389 COG2519 GCD14 tRNA(1-methylade 22.2 2.8E+02 0.0061 28.4 6.9 113 40-154 93-211 (256)
390 PRK10536 hypothetical protein; 22.1 1E+02 0.0023 31.6 3.9 33 35-71 178-210 (262)
391 PF00308 Bac_DnaA: Bacterial d 22.1 1E+02 0.0022 30.4 3.8 72 7-78 63-144 (219)
392 TIGR00362 DnaA chromosomal rep 21.8 70 0.0015 34.6 2.8 70 8-77 166-245 (405)
393 KOG0386 Chromatin remodeling c 21.8 1.1E+02 0.0024 37.0 4.4 57 131-190 444-501 (1157)
394 PRK10287 thiosulfate:cyanide s 21.6 1.7E+02 0.0038 25.3 4.8 36 131-168 60-95 (104)
395 PF00581 Rhodanese: Rhodanese- 21.6 1.2E+02 0.0025 25.4 3.7 37 131-169 67-109 (113)
396 PLN02160 thiosulfate sulfurtra 21.6 1.3E+02 0.0028 27.4 4.1 38 130-169 80-118 (136)
397 PRK04020 rps2P 30S ribosomal p 21.5 3.3E+02 0.0071 26.9 7.1 37 117-154 53-89 (204)
398 COG0470 HolB ATPase involved i 21.5 78 0.0017 32.4 3.0 40 32-72 108-147 (325)
399 TIGR02881 spore_V_K stage V sp 21.4 1.4E+02 0.003 30.1 4.8 44 35-78 107-155 (261)
400 TIGR01128 holA DNA polymerase 21.4 2.5E+02 0.0055 28.4 6.8 56 18-75 33-88 (302)
401 PRK04195 replication factor C 21.3 1.7E+02 0.0036 32.6 5.7 39 33-71 98-137 (482)
402 COG2109 BtuR ATP:corrinoid ade 21.3 1.6E+02 0.0036 28.8 4.8 54 32-85 121-176 (198)
403 PRK11054 helD DNA helicase IV; 21.2 1.4E+03 0.03 26.9 14.8 74 131-211 534-611 (684)
404 PF03354 Terminase_1: Phage Te 20.8 1.1E+02 0.0023 34.1 4.0 40 32-72 122-161 (477)
405 KOG2963 RNA-binding protein re 20.8 3E+02 0.0064 29.4 6.9 12 474-485 351-362 (405)
406 PRK07952 DNA replication prote 20.5 2.6E+02 0.0056 28.3 6.4 71 8-78 127-209 (244)
407 cd02767 MopB_ydeP The MopB_yde 20.4 2.8E+02 0.006 31.7 7.4 123 109-242 77-203 (574)
408 PF14424 Toxin-deaminase: The 20.4 2.3E+02 0.0049 26.0 5.4 47 120-166 82-133 (133)
409 PF13604 AAA_30: AAA domain; P 20.1 1.1E+02 0.0025 29.5 3.6 39 31-73 91-130 (196)
410 PRK05563 DNA polymerase III su 20.0 1.4E+02 0.0031 33.9 5.0 30 32-62 118-147 (559)
411 PRK03692 putative UDP-N-acetyl 20.0 6.6E+02 0.014 25.3 9.2 55 131-186 105-161 (243)
412 PRK14971 DNA polymerase III su 20.0 2E+02 0.0043 33.2 6.1 41 31-73 119-159 (614)
No 1
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2e-111 Score=883.09 Aligned_cols=538 Identities=50% Similarity=0.784 Sum_probs=457.0
Q ss_pred CcccccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHH
Q 008461 1 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQD 80 (564)
Q Consensus 1 ~Ek~r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~ 80 (564)
+|+.|++++||||||||||||||++++.|++++|+||||||||||+||||..+|+.|++++|+.+||+|||||++.++.+
T Consensus 183 ~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkd 262 (758)
T KOG0343|consen 183 FELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKD 262 (758)
T ss_pred HHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCe
Q 008461 81 LARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPL 160 (564)
Q Consensus 81 l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v 160 (564)
++++++.+|.||+++......+|.+|+|+|++++...|+++||+||++|...++|||++||++|.|+|+.|++++||+++
T Consensus 263 LaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l 342 (758)
T KOG0343|consen 263 LARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPL 342 (758)
T ss_pred HHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCce
Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCc
Q 008461 161 MCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 239 (564)
Q Consensus 161 ~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~ 239 (564)
++|||+|+|..|..++.+|-. ...||||||+++||||| |+|+||||||||.++++||||+|||+|++..|.++++++|
T Consensus 343 ~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF-paVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~p 421 (758)
T KOG0343|consen 343 LALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF-PAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTP 421 (758)
T ss_pred eeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC-cccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcc
Confidence 999999999999999999999 99999999999999999 8999999999999999999999999999999999999999
Q ss_pred chHH-HHHHHHHcCCCccccccccccchhHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHH
Q 008461 240 TEMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSA 318 (564)
Q Consensus 240 ~e~~-~l~~L~~~~i~i~~~~~~~~~~~~i~~~l~~~~~~~~~l~~~a~~af~sy~rs~~~~~~k~if~~~~l~l~~~A~ 318 (564)
++.+ |+..|+.++||+..+.+++.++.++..+++++|+++|+|++.||+||+||+||+|.++++.+|++..+++.+||.
T Consensus 422 sEeE~~l~~Lq~k~I~i~~i~i~~~k~~~i~~~l~~ll~~~~eLk~~aqka~isY~rsi~~~rdK~~f~~~~l~~~afa~ 501 (758)
T KOG0343|consen 422 SEEEAMLKKLQKKKIPIKEIKIDPEKLTSIRNKLEALLAKDPELKEYAQKAFISYLRSIYLMRDKRVFDVEKLDIEAFAD 501 (758)
T ss_pred hhHHHHHHHHHHcCCCHHhhccCHHHhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhhccchhhcchhccHHHHHH
Confidence 9955 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCc-ccccccccCCCCCCCCcccchhhhhhhhccccccCCCCCCCCCCCCCcceecccccccc-----ccc-h-
Q 008461 319 SLGLPMTPK-IRFLNQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGK-----ADL-L- 390 (564)
Q Consensus 319 s~GL~~~P~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~- 390 (564)
||||+++|+ ++|+++..++++ ++++.+. .-.+++++..+++|||+|||+|...+ +++ .
T Consensus 502 s~Gl~~~p~~~~~l~~~~k~~~-~~~l~e~-------------~~~~eeee~~~~ed~f~vK~~dvlge~~~l~ee~~~e 567 (758)
T KOG0343|consen 502 SLGLPGTPRIVRFLNKKAKKQG-IEQLMEQ-------------SVDEEEEEATDDEDFFKVKKHDVLGEPEQLKEEDAAE 567 (758)
T ss_pred hcCCCCCchhccchhhHHHhcC-hHhhhhh-------------hccchhhhccchhhhhheeccccccchhhhhhhhhhh
Confidence 999999999 999987666655 4444111 00000111113445555555333221 000 0
Q ss_pred ----hhh-------hhhhhhhhcccccccccCCCCceEEecCCCCCCCcchhhhhhh---ccCCCcchhHHHHHHHHHHH
Q 008461 391 ----EDV-------MRATRVKKNKKLKINVHRPLGTRLVFDEECNTVPPLAMLADTK---NANVSLDQDQKTEYYKKIRE 456 (564)
Q Consensus 391 ----~~~-------~~~~~~~~~k~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 456 (564)
..+ .+..|.+..||+++ +..++|+|++|||||++++.|. +..+. ..|+ +.+....|+.++++
T Consensus 568 k~d~~~~svkk~~k~~~tKva~aKKa~~-k~~kvnsK~~FddEGe~~~~~~-~~~e~~~~~~~~--d~~~~g~~l~k~~a 643 (758)
T KOG0343|consen 568 KEDNDFISVKKKDKKRVTKVALAKKALK-KNLKVNSKLTFDDEGELAPEYE-QMPETITSKAGD--DDDTGGINLEKAKA 643 (758)
T ss_pred cccCCCceeccchhhhHHHHHHHHHHHH-HhhccCceeeecCccccchhhh-hchhhhhhhccC--chhhccchHHHHHH
Confidence 000 12345666666665 5556799999999999999994 44333 3355 66777788999999
Q ss_pred HHHHhcHHhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-----ccccc----CCCCccchhhhccCCcccccccCCCCCC
Q 008461 457 ELKRADKEDKLLDRQRRREKRIKQKMKRKRGGLGDDDD-----EEDED----NASDKDEESMERGRRKKAKIYFDSDSDN 527 (564)
Q Consensus 457 ~~~~~d~~dk~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 527 (564)
+|+++|++||+++|+++++||+++++++|+.++++.++ +.+++ .||++ ++|++|+|+|+|++....+++
T Consensus 644 ~l~~~D~~DK~~~kek~~ek~r~k~~k~rr~aeea~~~e~e~~e~d~~~~~~~gs~d--D~d~s~lPd~dk~~kk~~~d~ 721 (758)
T KOG0343|consen 644 ELKEEDKEDKKRFKEKRKEKRREKLEKERRRAEEANEEEAEAEEEDGDFVDWSGSED--DPDISWLPDPDKVRKKKESDS 721 (758)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhccCchhcccCCcc--cCCcccCCChhhhhhccccCc
Confidence 99999999999999999999999999998876543111 11221 24444 499999999998887666555
Q ss_pred chhhhhcC----CCCCCCCCCCCCHHHHHHHHHHhHh
Q 008461 528 DNDERKQN----KDDNGPNIDSISLAEQEALALKLLN 560 (564)
Q Consensus 528 ~~~~~~~~----~~~~~~~~~~~~~~~~e~~~~~ll~ 560 (564)
++.+.+.. ...+..+ .+.+++|+|++|+++..
T Consensus 722 de~e~k~~s~~~~~g~k~~-~~~~~eD~e~~~~k~~~ 757 (758)
T KOG0343|consen 722 DENEGKIQSALAADGIKEV-SNSSVEDVEPLALKLKK 757 (758)
T ss_pred hhhcccccccccccccccc-CCcchhhcchhhHHhhc
Confidence 55432221 1233334 78999999999999865
No 2
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.9e-66 Score=540.83 Aligned_cols=323 Identities=38% Similarity=0.697 Sum_probs=312.7
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.++||+|+|||||++||.+++.|-..+++++|+||||+++++||...+..|+..+|+++|++|||||+|..|.++++..+
T Consensus 204 k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L 283 (543)
T KOG0342|consen 204 KGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGAL 283 (543)
T ss_pred ccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C-CCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc
Q 008461 87 K-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLN-SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 164 (564)
Q Consensus 87 ~-~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~-~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH 164 (564)
+ +|.+|.+.......|...+.|.|++++...++..|+.+|+.+.+ .++||||+||..+.+++++|..+ .++|..+|
T Consensus 284 ~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~--dlpv~eiH 361 (543)
T KOG0342|consen 284 KRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI--DLPVLEIH 361 (543)
T ss_pred cCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc--CCchhhhh
Confidence 7 59999999999999999999999999999999999999999987 99999999999999999999975 99999999
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 165 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 165 g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
|+++|..|..++.+|++ +..|||||||+|||+|| |+|+||||||+|.++.+||||+|||||.|+.|.+++|+.|.|..
T Consensus 362 gk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~-P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~ 440 (543)
T KOG0342|consen 362 GKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDI-PDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELG 440 (543)
T ss_pred cCCcccccchHHHHHhhcccceEEecchhhccCCC-CCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHH
Confidence 99999999999999999 99999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccccccccccchhHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHhcCCC
Q 008461 244 MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLP 323 (564)
Q Consensus 244 ~l~~L~~~~i~i~~~~~~~~~~~~i~~~l~~~~~~~~~l~~~a~~af~sy~rs~~~~~~k~if~~~~l~l~~~A~s~GL~ 323 (564)
|++.|+ ++|+++.++.+.....++.+++.++.++..+++.|+.||.+|++.|..++.+.+|+++.+++.++|.|||++
T Consensus 441 Flr~LK--~lpl~~~e~~~~~~~~v~~~~~~li~~~y~~~~aak~ay~syl~~y~s~slk~~~~~~~l~La~~~~s~gf~ 518 (543)
T KOG0342|consen 441 FLRYLK--KLPLEEFEFPPLKPEDVQSQLEKLISKNYSLKEAAKEAYKSYLGAYNSHSLKDIFNVNLLELAAVAKSFGFS 518 (543)
T ss_pred HHHHHh--hCCCcccCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccchhhhcccccchhhHHHHHHHcCCC
Confidence 999998 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccc
Q 008461 324 MTPKIRFLNQK 334 (564)
Q Consensus 324 ~~P~i~~~~~~ 334 (564)
.||.+...-..
T Consensus 519 ~pp~v~~~i~~ 529 (543)
T KOG0342|consen 519 VPPAVDLKIDG 529 (543)
T ss_pred CCccceeeccc
Confidence 99999886543
No 3
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-66 Score=539.37 Aligned_cols=326 Identities=37% Similarity=0.590 Sum_probs=308.7
Q ss_pred cCCCcEEEEcHHHHHHHHhc-CCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 6 VNELNILVCTPGRLLQHMDE-TPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~-~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
..++||+|||||||++++.+ ...+++.+|++|||||||+|++|||...++.|++.||++|+|.|||||++..+.+|++.
T Consensus 129 ee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~ra 208 (567)
T KOG0345|consen 129 EEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARA 208 (567)
T ss_pred HhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHh
Confidence 35899999999999999987 34567789999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 164 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH 164 (564)
+++||..|.+...+...+|..+..+|++|+...|+..|..+|.++...++||||+||..|++++..|..+.+.++++.+|
T Consensus 209 GLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iH 288 (567)
T KOG0345|consen 209 GLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIH 288 (567)
T ss_pred hccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEec
Confidence 99999999999988888999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 165 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 165 g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
|.|++..|..++..|+. ...||+|||+++||||| |+|+||||||+|.+++.|+||+|||||+|+.|.+|+|+.|.|..
T Consensus 289 GK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDi-p~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~a 367 (567)
T KOG0345|consen 289 GKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDI-PGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEA 367 (567)
T ss_pred chhcchhHHHHHHHHHhccCceEEeehhhhccCCC-CCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHH
Confidence 99999999999999999 99999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcC-CCccccccccccchhHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHhcCC
Q 008461 244 MLEKLREAK-IPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGL 322 (564)
Q Consensus 244 ~l~~L~~~~-i~i~~~~~~~~~~~~i~~~l~~~~~~~~~l~~~a~~af~sy~rs~~~~~~k~if~~~~l~l~~~A~s~GL 322 (564)
|+..|.-++ ++++.+........ +.+.+.+++..+..+.+.+.+||+||+|+|..|.+..||.++.||++.+|.+|||
T Consensus 368 YveFl~i~~~v~le~~~~e~~~~~-~~~~ir~~~~~DR~~~dkG~kAFVS~VraY~~H~cs~Ifr~kdLd~~~lA~~YgL 446 (567)
T KOG0345|consen 368 YVEFLRIKGKVELERIDTEKASLS-VYQDIRSIISKDRAVLDKGLKAFVSHVRAYKKHHCSYIFRLKDLDLGKLATLYGL 446 (567)
T ss_pred HHHHHHhcCccchhhhcccccchh-HHHHHHHHhcccHHHHhhhHHHHHHHHHHHhhcceeEEEeecCCcHHHHHHHHHH
Confidence 999999885 66677666544433 6788999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccc
Q 008461 323 PMTPKIRFLNQ 333 (564)
Q Consensus 323 ~~~P~i~~~~~ 333 (564)
...|+|+++++
T Consensus 447 l~lP~M~Elk~ 457 (567)
T KOG0345|consen 447 LRLPKMPELKQ 457 (567)
T ss_pred HhCCCcHHHhh
Confidence 99999999875
No 4
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-60 Score=498.74 Aligned_cols=329 Identities=36% Similarity=0.587 Sum_probs=290.6
Q ss_pred cccccC-CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhC-------------CCCCcE
Q 008461 2 EKEHVN-ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL-------------PKHRQT 67 (564)
Q Consensus 2 Ek~r~~-~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l-------------p~~~Q~ 67 (564)
||+|++ |+||||+|||||++||.++..|.+++|++|||||||+|+++||..++..|+..+ |...|.
T Consensus 255 EKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~ 334 (708)
T KOG0348|consen 255 EKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQN 334 (708)
T ss_pred HHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHh
Confidence 788887 899999999999999999999999999999999999999999999999999876 335799
Q ss_pred EEEeccCChhHHHHHHHhcCCCCccccccc-----------------------ccccCCccceeEEEEcCcccHHHHHHH
Q 008461 68 FLFSATQTKSVQDLARLSLKDPQYLSVHEE-----------------------SVTATPNRLQQTAMIVPLEQKLDMLWS 124 (564)
Q Consensus 68 llfSATl~~~v~~l~~~~l~~p~~i~v~~~-----------------------~~~~~p~~l~q~~~~~~~~~Kl~~L~~ 124 (564)
+|+|||++..|..|+.+.|++|.+|..... .....|..|.|+|+++|+.-++-+|..
T Consensus 335 mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa 414 (708)
T KOG0348|consen 335 MLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAA 414 (708)
T ss_pred HhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHH
Confidence 999999999999999999999999983210 114678899999999999999999999
Q ss_pred HHHHcC----CCcEEEEeCChHHHHHHHHHHHhhC--------------------CCCCeeeccCCCCHHHHHHHHHHHh
Q 008461 125 FIKAHL----NSKILVFLTSCKQVKYVFEAFKKLR--------------------PGIPLMCLYGRMKQDRRMAIYAQFC 180 (564)
Q Consensus 125 ~L~~~~----~~k~IVF~~t~k~v~~l~e~L~~l~--------------------~gi~v~~lHg~m~~~~R~~i~~~F~ 180 (564)
+|.+.. ..++|||++||..|+|.|..|.... -+..++.|||+|+|++|..+++.|+
T Consensus 415 ~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs 494 (708)
T KOG0348|consen 415 LLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFS 494 (708)
T ss_pred HHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhc
Confidence 997653 6799999999999999999997642 1345789999999999999999999
Q ss_pred c-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHHHHcCCCccccc
Q 008461 181 E-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTK 259 (564)
Q Consensus 181 ~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~~i~i~~~~ 259 (564)
. ...||+||||++||||+ |.|+||||||+|.++++|+||||||+|+|..|.+++|+.|+|.+|++.|+.+.+.+.+..
T Consensus 495 ~~~~~VLLcTDVAaRGLDl-P~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~ 573 (708)
T KOG0348|consen 495 HSRRAVLLCTDVAARGLDL-PHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFD 573 (708)
T ss_pred cccceEEEehhhhhccCCC-CCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccc
Confidence 9 88899999999999999 899999999999999999999999999999999999999999999999988865543322
Q ss_pred c------------------ccccchhHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcc--cccccccccCCCHHHHHHh
Q 008461 260 A------------------NTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ--KDKEVFDVTKLSIDEFSAS 319 (564)
Q Consensus 260 ~------------------~~~~~~~i~~~l~~~~~~~~~l~~~a~~af~sy~rs~~~~--~~k~if~~~~l~l~~~A~s 319 (564)
. ......+++..++.++..++.++.+|.+||+||+|.|..+ ..+.||++..|+++++|+|
T Consensus 574 ~~~~l~~~~~~~~k~~~~e~~~~at~~q~~~e~~~~~~~~~~~~a~kaf~S~vr~Yath~~elk~iFnvr~lHlGH~AKS 653 (708)
T KOG0348|consen 574 MEILLPAFKPRKDKAKTKEWQERATTLQLNLERLVVGDEAMKNLAKKAFVSWVRAYATHPSELKSIFNVRFLHLGHVAKS 653 (708)
T ss_pred hhhhhhhcCcccccccchhhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhChhhhccceehhhhhhhHHHHh
Confidence 1 1123345667888999999999999999999999998665 5789999999999999999
Q ss_pred cCCCCCC-ccccc
Q 008461 320 LGLPMTP-KIRFL 331 (564)
Q Consensus 320 ~GL~~~P-~i~~~ 331 (564)
|||.++| ++.-.
T Consensus 654 FaLReaP~k~~g~ 666 (708)
T KOG0348|consen 654 FALREAPGKLSGK 666 (708)
T ss_pred hHhhhcchhhhcc
Confidence 9999999 54443
No 5
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-51 Score=417.60 Aligned_cols=240 Identities=40% Similarity=0.675 Sum_probs=230.8
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
..|+|||||||||++||.++..|++..|++||+||||+++++.|...++.|+..+|..+|++|||||+|..+..+.+.++
T Consensus 178 kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl 257 (476)
T KOG0330|consen 178 KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASL 257 (476)
T ss_pred cCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
.+|..|.+. +...+...+.|+|+.++...|-.+|..+++...+..+||||+||..++++.-.|+.+ |+.+..+||.
T Consensus 258 ~~p~~v~~s--~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l--g~~a~~LhGq 333 (476)
T KOG0330|consen 258 DNPVKVAVS--SKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL--GFQAIPLHGQ 333 (476)
T ss_pred CCCeEEecc--chhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc--Ccceecccch
Confidence 999888764 456788899999999999999999999999999999999999999999999999986 9999999999
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHH
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l 245 (564)
|+|..|...++.|++ ...||||||+++||||+ |.|++|||||+|.+..+||||+|||||+|++|.+|.|++..|.+.+
T Consensus 334 msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDi-p~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~ 412 (476)
T KOG0330|consen 334 MSQSKRLGALNKFKAGARSILVCTDVASRGLDI-PHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELV 412 (476)
T ss_pred hhHHHHHHHHHHHhccCCcEEEecchhcccCCC-CCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHH
Confidence 999999999999999 99999999999999999 9999999999999999999999999999999999999999999988
Q ss_pred HHHHHc
Q 008461 246 EKLREA 251 (564)
Q Consensus 246 ~~L~~~ 251 (564)
.+|+..
T Consensus 413 qrIE~~ 418 (476)
T KOG0330|consen 413 QRIEHA 418 (476)
T ss_pred HHHHHH
Confidence 888775
No 6
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-49 Score=411.96 Aligned_cols=274 Identities=34% Similarity=0.558 Sum_probs=239.2
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHh
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
..+|+|+|+|||||.+||.+.++|+++++.+||+|||||||+.||...|+.|+..+|+++|++|||||++..|.+|+.++
T Consensus 300 Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slS 379 (691)
T KOG0338|consen 300 RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLS 379 (691)
T ss_pred hhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccccCCccceeEEEEcCc---ccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeee
Q 008461 86 LKDPQYLSVHEESVTATPNRLQQTAMIVPL---EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC 162 (564)
Q Consensus 86 l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~---~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~ 162 (564)
|++|..|.+.+.. .++..|.|.|+.+.+ ..+-..|.+++......++|||+.|+++|..+.-+|--+ |+.+..
T Consensus 380 L~kPvrifvd~~~--~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl--gl~agE 455 (691)
T KOG0338|consen 380 LNKPVRIFVDPNK--DTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLL--GLKAGE 455 (691)
T ss_pred cCCCeEEEeCCcc--ccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHh--hchhhh
Confidence 9999999887654 456778888886653 357788889998887899999999999999999888765 999999
Q ss_pred ccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcch
Q 008461 163 LYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241 (564)
Q Consensus 163 lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e 241 (564)
+||.++|.+|...++.|+. .+.||||||+++||||| ++|..||||+||.+...|+||+|||+|+|+.|.++.|+..++
T Consensus 456 lHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI-~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 456 LHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDI-EGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred hcccccHHHHHHHHHHHHhccCCEEEEechhhccCCc-cceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEecccc
Confidence 9999999999999999999 99999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-----------CCCccccccccccchhHHHHHHHHHhcChhHHH
Q 008461 242 MKMLEKLREA-----------KIPIHFTKANTKRLQPVSGLLAALLVKYPDMQH 284 (564)
Q Consensus 242 ~~~l~~L~~~-----------~i~i~~~~~~~~~~~~i~~~l~~~~~~~~~l~~ 284 (564)
..+|+.+... .||...+.-....+..+...++.++....+-++
T Consensus 535 RkllK~iik~~~~a~~klk~R~i~~~~Iek~~~~ieemE~~iq~vl~eE~~eke 588 (691)
T KOG0338|consen 535 RKLLKEIIKSSTKAGSKLKNRNIPPEVIEKFRKKIEEMEDTIQAVLDEEREEKE 588 (691)
T ss_pred HHHHHHHHhhhhhcccchhhcCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9988887554 233333332233444555555555554444333
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-48 Score=424.87 Aligned_cols=240 Identities=36% Similarity=0.603 Sum_probs=228.0
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhcC
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK 87 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l~ 87 (564)
+++|||||||||++|+.+. .++++++.++|+||||+|++|||...+..|+..+|.++|+++||||+|..+..+++.++.
T Consensus 150 ~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~ 228 (513)
T COG0513 150 GVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLN 228 (513)
T ss_pred CCCEEEECccHHHHHHHcC-CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcc
Confidence 5999999999999999987 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccccCCccceeEEEEcCccc-HHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 88 DPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 88 ~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~-Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
+|..+.+.......++..+.|.|+.++... |+..|+.++......++||||+|+..|+.++..|... |+.+..+||+
T Consensus 229 ~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~--g~~~~~lhG~ 306 (513)
T COG0513 229 DPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR--GFKVAALHGD 306 (513)
T ss_pred CCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC--CCeEEEecCC
Confidence 999888876665568899999999999876 9999999999888889999999999999999999985 8999999999
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcc-hHHH
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT-EMKM 244 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~-e~~~ 244 (564)
|+|.+|..+++.|++ ...||||||+++||||| |+|++|||||+|.+++.|+||+|||||+|+.|.+++|+++. |...
T Consensus 307 l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi-~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~ 385 (513)
T COG0513 307 LPQEERDRALEKFKDGELRVLVATDVAARGLDI-PDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKK 385 (513)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEechhhccCCc-cccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHH
Confidence 999999999999999 99999999999999999 99999999999999999999999999999999999999986 6778
Q ss_pred HHHHHHc
Q 008461 245 LEKLREA 251 (564)
Q Consensus 245 l~~L~~~ 251 (564)
+..++..
T Consensus 386 l~~ie~~ 392 (513)
T COG0513 386 LKRIEKR 392 (513)
T ss_pred HHHHHHH
Confidence 8888776
No 8
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-47 Score=410.52 Aligned_cols=239 Identities=32% Similarity=0.548 Sum_probs=220.7
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhC-CCCCcEEEEeccCChhHHHHHHH
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL-PKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l-p~~~Q~llfSATl~~~v~~l~~~ 84 (564)
.++++|+|||||||++||..+ .++++++.++||||||+|++|||..++..|+..+ ++.+|+++||||+|.++..++..
T Consensus 213 ~~gvdiviaTPGRl~d~le~g-~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~ 291 (519)
T KOG0331|consen 213 ERGVDVVIATPGRLIDLLEEG-SLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAED 291 (519)
T ss_pred hcCCcEEEeCChHHHHHHHcC-CccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHH
Confidence 357999999999999999987 7889999999999999999999999999999999 55679999999999999999999
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc---CCCcEEEEeCChHHHHHHHHHHHhhCCCCCee
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH---LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLM 161 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~---~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~ 161 (564)
++.+|..+.+..........++.|....|+...|...|..+|... ...|+||||+|++.|+.|...|+.. ++++.
T Consensus 292 fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~--~~~a~ 369 (519)
T KOG0331|consen 292 FLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK--GWPAV 369 (519)
T ss_pred HhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc--Cccee
Confidence 999999988876655566788899999999888888888888766 3679999999999999999999874 79999
Q ss_pred eccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcc
Q 008461 162 CLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240 (564)
Q Consensus 162 ~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~ 240 (564)
+|||+.+|.+|..+++.|++ ++.||||||+|+||||| |+|++|||||+|.+++.|+||+|||||+|+.|.+++|++..
T Consensus 370 ~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi-~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~ 448 (519)
T KOG0331|consen 370 AIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDV-PDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSD 448 (519)
T ss_pred eecccccHHHHHHHHHhcccCCcceEEEcccccccCCC-ccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHH
Confidence 99999999999999999999 99999999999999999 99999999999999999999999999999999999999998
Q ss_pred hHHHHHHH
Q 008461 241 EMKMLEKL 248 (564)
Q Consensus 241 e~~~l~~L 248 (564)
+......+
T Consensus 449 ~~~~a~~l 456 (519)
T KOG0331|consen 449 NAKLAREL 456 (519)
T ss_pred HHHHHHHH
Confidence 87655544
No 9
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-45 Score=359.21 Aligned_cols=249 Identities=27% Similarity=0.469 Sum_probs=230.4
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+.+++.|||||+++++... .+....++||||||||.||+.||..++-.|..++|+..|++++|||+|..+.+....++
T Consensus 144 ~G~hvVsGtPGrv~dmikr~-~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfm 222 (400)
T KOG0328|consen 144 YGQHVVSGTPGRVLDMIKRR-SLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFM 222 (400)
T ss_pred ccceEeeCCCchHHHHHHhc-cccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhc
Confidence 47899999999999999876 78889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcc-cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLE-QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 165 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~-~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg 165 (564)
.+|..+.+.... .+...+.|+|+.+..+ +|+++|+++.....-.+++|||||++.|.+|.+-++.. .+.+.++||
T Consensus 223 tdpvrilvkrde--ltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~--nftVssmHG 298 (400)
T KOG0328|consen 223 TDPVRILVKRDE--LTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHG 298 (400)
T ss_pred CCceeEEEecCC--CchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh--CceeeeccC
Confidence 999998886654 4567789999998865 59999999998888899999999999999999999884 889999999
Q ss_pred CCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHH
Q 008461 166 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244 (564)
Q Consensus 166 ~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~ 244 (564)
+|+|.+|..++..|++ +++||+|||+-+||+|+ |.|++|||||+|.+.+.||||+||+||+|+.|.++.|+...+...
T Consensus 299 Dm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv-~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 299 DMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV-QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred CcchhHHHHHHHHhhcCCceEEEEechhhccCCc-ceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHH
Confidence 9999999999999999 99999999999999999 899999999999999999999999999999999999999999998
Q ss_pred HHHHHHc-CCCccccccc
Q 008461 245 LEKLREA-KIPIHFTKAN 261 (564)
Q Consensus 245 l~~L~~~-~i~i~~~~~~ 261 (564)
+..+++. +..|.+++.+
T Consensus 378 lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 378 LRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred HHHHHHHHhhhcccccch
Confidence 8888776 5566655544
No 10
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.3e-44 Score=378.78 Aligned_cols=236 Identities=31% Similarity=0.548 Sum_probs=219.6
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCC----------------------
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKH---------------------- 64 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~---------------------- 64 (564)
.+|.|+|||||||++.|.+. .+-++...+||+||||+|+||||.+.+..||.++|..
T Consensus 371 ~gceiviatPgrLid~Lenr-~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~ 449 (673)
T KOG0333|consen 371 MGCEIVIATPGRLIDSLENR-YLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSS 449 (673)
T ss_pred ccceeeecCchHHHHHHHHH-HHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccc
Confidence 58999999999999999876 6678999999999999999999999999999999741
Q ss_pred ---CcEEEEeccCChhHHHHHHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCCh
Q 008461 65 ---RQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSC 141 (564)
Q Consensus 65 ---~Q~llfSATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~ 141 (564)
+|++.||||+|+.+..+++.++.+|.++.+... ..+...++|.++.++...|...|..+|.++...++|||+|++
T Consensus 450 k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~--gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~k 527 (673)
T KOG0333|consen 450 KKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSA--GKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTK 527 (673)
T ss_pred cceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccC--CCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEech
Confidence 799999999999999999999999999988654 345577899999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHH
Q 008461 142 KQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHR 220 (564)
Q Consensus 142 k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqR 220 (564)
+.|+.|++.|.++ |+.+..|||+-+|++|..++..|+. ..+||||||+++||||+ |+|.+|||||++.+++.|+||
T Consensus 528 k~~d~lAk~LeK~--g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDI-pnVSlVinydmaksieDYtHR 604 (673)
T KOG0333|consen 528 KGADALAKILEKA--GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDI-PNVSLVINYDMAKSIEDYTHR 604 (673)
T ss_pred hhHHHHHHHHhhc--cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCC-CccceeeecchhhhHHHHHHH
Confidence 9999999999996 8999999999999999999999999 99999999999999999 999999999999999999999
Q ss_pred hcccccCCCCceEEEEeCcchHHHHHHH
Q 008461 221 VGRTARYNSGGRSVLFLTPTEMKMLEKL 248 (564)
Q Consensus 221 iGRtgR~g~~G~~il~l~~~e~~~l~~L 248 (564)
||||||+|+.|.++.|+++.+...+..|
T Consensus 605 IGRTgRAGk~GtaiSflt~~dt~v~ydL 632 (673)
T KOG0333|consen 605 IGRTGRAGKSGTAISFLTPADTAVFYDL 632 (673)
T ss_pred hccccccccCceeEEEeccchhHHHHHH
Confidence 9999999999999999999986644333
No 11
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-44 Score=357.29 Aligned_cols=247 Identities=29% Similarity=0.476 Sum_probs=232.8
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
..++++||||||+++++..+ ...+++..++|+||||.|++..|...+..++..+|+++|+++||||+|-.|..+...++
T Consensus 202 ~~VH~~vgTPGRIlDL~~Kg-Va~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l 280 (459)
T KOG0326|consen 202 QTVHLVVGTPGRILDLAKKG-VADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHL 280 (459)
T ss_pred CceEEEEcCChhHHHHHhcc-cccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhc
Confidence 37899999999999988776 55789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
++|..|.+..+ .++..+.|+|..+....|+.+|-.++....-.+.||||||...|+.++.-+.++ |++++++|++
T Consensus 281 ~kPy~INLM~e---Ltl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITel--GyscyyiHak 355 (459)
T KOG0326|consen 281 KKPYEINLMEE---LTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL--GYSCYYIHAK 355 (459)
T ss_pred cCcceeehhhh---hhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhc--cchhhHHHHH
Confidence 99999987654 578899999999999999999999998888889999999999999999999987 9999999999
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHH
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l 245 (564)
|.|+.|..++..|++ .++.|||||++.||||+ ++|++|||||+|.++++|+||+||+||+|..|.+|.+++..+...+
T Consensus 356 M~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDi-qavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L 434 (459)
T KOG0326|consen 356 MAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDI-QAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNL 434 (459)
T ss_pred HHHhhhhhhhhhhhccccceeeehhhhhccccc-ceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhH
Confidence 999999999999999 99999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCCcccccc
Q 008461 246 EKLREA-KIPIHFTKA 260 (564)
Q Consensus 246 ~~L~~~-~i~i~~~~~ 260 (564)
.++++. +-+|++++.
T Consensus 435 ~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 435 YRIEQELGTEIKPIPS 450 (459)
T ss_pred HHHHHHhccccccCCC
Confidence 999887 767776654
No 12
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-44 Score=359.47 Aligned_cols=251 Identities=31% Similarity=0.496 Sum_probs=226.0
Q ss_pred CCCcEEEEcHHHHHHHHhcC---CCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDET---PNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLAR 83 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~---~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~ 83 (564)
.++||+|+|||||.+|+..+ -.+.+++++++|+||||++++.+|...|..|.+-+|..+|+++||||+++.+..+..
T Consensus 124 ~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~ 203 (442)
T KOG0340|consen 124 DRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFG 203 (442)
T ss_pred cCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhc
Confidence 58999999999999999877 244578999999999999999999999999999999999999999999999999888
Q ss_pred HhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCe
Q 008461 84 LSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL---NSKILVFLTSCKQVKYVFEAFKKLRPGIPL 160 (564)
Q Consensus 84 ~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~---~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v 160 (564)
.....+............++..|.|.|+.|+...|-.+|+.+|+... +..++||+||+..|+.++..|+.+ ++.+
T Consensus 204 ~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l--e~r~ 281 (442)
T KOG0340|consen 204 CPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL--EVRV 281 (442)
T ss_pred CCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh--ceee
Confidence 77776543333333445788999999999999999999999997643 578999999999999999999987 8999
Q ss_pred eeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCc
Q 008461 161 MCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 239 (564)
Q Consensus 161 ~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~ 239 (564)
..+||-|+|.+|...+.+|++ ...||||||+++||||| |.|++|||||+|.++.+||||+|||+|+|+.|.+|.|+++
T Consensus 282 ~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI-P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~ 360 (442)
T KOG0340|consen 282 VSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI-PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQ 360 (442)
T ss_pred eehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC-CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEech
Confidence 999999999999999999999 99999999999999999 9999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHc-CCCcccccc
Q 008461 240 TEMKMLEKLREA-KIPIHFTKA 260 (564)
Q Consensus 240 ~e~~~l~~L~~~-~i~i~~~~~ 260 (564)
.+.+.+..+++. +-...+.+.
T Consensus 361 rDv~l~~aiE~~igkKl~e~~~ 382 (442)
T KOG0340|consen 361 RDVELLQAIEEEIGKKLTEYNK 382 (442)
T ss_pred hhHHHHHHHHHHHhcccccccc
Confidence 999999999876 444444443
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.7e-41 Score=378.57 Aligned_cols=249 Identities=33% Similarity=0.512 Sum_probs=227.6
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+++|||||||+|++||... .++++++.+|||||||.|++++|...+..|+..+|..+|+++||||+|..+..++..++
T Consensus 124 ~~~~IVVgTPgrl~d~l~r~-~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l 202 (629)
T PRK11634 124 QGPQIVVGTPGRLLDHLKRG-TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFM 202 (629)
T ss_pred CCCCEEEECHHHHHHHHHcC-CcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHc
Confidence 46899999999999999875 67789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
.+|..+.+.... .+...+.|.|+.+....|...|..+|......++||||+|+..+..+++.|... |+.+..+||+
T Consensus 203 ~~~~~i~i~~~~--~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~--g~~~~~lhgd 278 (629)
T PRK11634 203 KEPQEVRIQSSV--TTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN--GYNSAALNGD 278 (629)
T ss_pred CCCeEEEccCcc--ccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC--CCCEEEeeCC
Confidence 999887665432 344567888888888899999999998877789999999999999999999875 8999999999
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHH
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l 245 (564)
|++.+|..+++.|++ +..||||||+++||||+ |+|++|||||+|.++++|+||+|||||+|+.|.+++|+.+.+..++
T Consensus 279 ~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDi-p~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l 357 (629)
T PRK11634 279 MNQALREQTLERLKDGRLDILIATDVAARGLDV-ERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 (629)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCc-ccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHH
Confidence 999999999999999 99999999999999999 9999999999999999999999999999999999999999998899
Q ss_pred HHHHHc-CCCccccccc
Q 008461 246 EKLREA-KIPIHFTKAN 261 (564)
Q Consensus 246 ~~L~~~-~i~i~~~~~~ 261 (564)
+.++.. ++.+..+.+.
T Consensus 358 ~~ie~~~~~~i~~~~~p 374 (629)
T PRK11634 358 RNIERTMKLTIPEVELP 374 (629)
T ss_pred HHHHHHhCCCcceecCC
Confidence 988775 6666665544
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.4e-41 Score=367.98 Aligned_cols=243 Identities=33% Similarity=0.528 Sum_probs=222.4
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+++|+|||||+|++++.+. .+.++++++|||||||+|+++||...+..++..+|..+|+++||||+|+.+..++..++
T Consensus 122 ~~~~IvV~Tp~rl~~~l~~~-~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~ 200 (460)
T PRK11776 122 HGAHIIVGTPGRILDHLRKG-TLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQ 200 (460)
T ss_pred CCCCEEEEChHHHHHHHHcC-CccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhc
Confidence 47899999999999999865 57789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
.+|..+.+.... ....+.+.|+.++...|+..|..++....+.++||||+|+..++.+++.|... ++.+..+||+
T Consensus 201 ~~~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~--~~~v~~~hg~ 275 (460)
T PRK11776 201 RDPVEVKVESTH---DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ--GFSALALHGD 275 (460)
T ss_pred CCCEEEEECcCC---CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC--CCcEEEEeCC
Confidence 999887765433 23457888888888889999999998888889999999999999999999885 8999999999
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHH
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l 245 (564)
|++.+|..+++.|++ ...|||||++++||||+ |+|++||+||+|.++.+|+||+|||||.|..|.+++|+++.+...+
T Consensus 276 ~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi-~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~ 354 (460)
T PRK11776 276 LEQRDRDQVLVRFANRSCSVLVATDVAARGLDI-KALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRA 354 (460)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEecccccccch-hcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHH
Confidence 999999999999999 99999999999999999 9999999999999999999999999999999999999999998888
Q ss_pred HHHHHc-CCCcc
Q 008461 246 EKLREA-KIPIH 256 (564)
Q Consensus 246 ~~L~~~-~i~i~ 256 (564)
..++.. +.++.
T Consensus 355 ~~i~~~~~~~~~ 366 (460)
T PRK11776 355 NAIEDYLGRKLN 366 (460)
T ss_pred HHHHHHhCCCCc
Confidence 877664 44443
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.5e-41 Score=364.14 Aligned_cols=239 Identities=29% Similarity=0.518 Sum_probs=217.8
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCC--CCcEEEEeccCChhHHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK--HRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~--~~Q~llfSATl~~~v~~l~~~ 84 (564)
.+++|||||||+|++++.+. .+++.++++|||||||+++++||...+..|+..+|. .+|+++||||++..+..++..
T Consensus 132 ~~~~IlV~TP~~l~~~l~~~-~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~ 210 (423)
T PRK04837 132 SGVDILIGTTGRLIDYAKQN-HINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFE 210 (423)
T ss_pred CCCCEEEECHHHHHHHHHcC-CcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHH
Confidence 46899999999999998765 678899999999999999999999999999999984 578899999999999999999
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 164 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH 164 (564)
.+.+|.++.+.... .....+.+.++.+....|+..|..++......++||||+|+..|+.++..|... |+.+..+|
T Consensus 211 ~~~~p~~i~v~~~~--~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~v~~lh 286 (423)
T PRK04837 211 HMNNPEYVEVEPEQ--KTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD--GHRVGLLT 286 (423)
T ss_pred HCCCCEEEEEcCCC--cCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC--CCcEEEec
Confidence 99999888765433 344567777777778889999999998877899999999999999999999874 89999999
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 165 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 165 g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
|+|++.+|..+++.|++ +..||||||+++||||| |+|++||+||+|.++..|+||+|||||.|+.|.+++|+++.+..
T Consensus 287 g~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi-p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~ 365 (423)
T PRK04837 287 GDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI-PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 365 (423)
T ss_pred CCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc-cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHH
Confidence 99999999999999999 99999999999999999 99999999999999999999999999999999999999999888
Q ss_pred HHHHHHHc
Q 008461 244 MLEKLREA 251 (564)
Q Consensus 244 ~l~~L~~~ 251 (564)
.+..+++.
T Consensus 366 ~~~~i~~~ 373 (423)
T PRK04837 366 NLPAIETY 373 (423)
T ss_pred HHHHHHHH
Confidence 88888654
No 16
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-41 Score=344.51 Aligned_cols=238 Identities=32% Similarity=0.494 Sum_probs=219.0
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
++.+|+|||||||.++...+ .+++.++.||||||||+||||||..++..|+--+.+++|+++.|||+|..|..|+..++
T Consensus 342 rgveiiiatPgrlndL~~~n-~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~ 420 (629)
T KOG0336|consen 342 RGVEIIIATPGRLNDLQMDN-VINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYL 420 (629)
T ss_pred cCceEEeeCCchHhhhhhcC-eeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhh
Confidence 58999999999999877665 78899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 165 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~-~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg 165 (564)
++|..+.+..-...+ ...+.|.+++....+|+..+..|+.+.. +.|+||||+.+..+..|..-|.- .|+..-.|||
T Consensus 421 Kep~~v~vGsLdL~a-~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l--~gi~~q~lHG 497 (629)
T KOG0336|consen 421 KEPMIVYVGSLDLVA-VKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCL--KGISSQSLHG 497 (629)
T ss_pred hCceEEEecccceee-eeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhh--cccchhhccC
Confidence 999998887655433 4667888888888899988888888765 68999999999999999998875 5999999999
Q ss_pred CCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHH
Q 008461 166 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244 (564)
Q Consensus 166 ~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~ 244 (564)
+-.|.+|...++.|++ ...||||||+++||||+ |+|++|+|||+|.+++.|+||+|||||+|+.|.++.|++.++..+
T Consensus 498 ~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv-~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 498 NREQSDREMALEDFKSGEVRILVATDLASRGLDV-PDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSM 576 (629)
T ss_pred ChhhhhHHHHHHhhhcCceEEEEEechhhcCCCc-hhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHH
Confidence 9999999999999999 99999999999999999 999999999999999999999999999999999999999998887
Q ss_pred HHHHH
Q 008461 245 LEKLR 249 (564)
Q Consensus 245 l~~L~ 249 (564)
...|.
T Consensus 577 a~eLI 581 (629)
T KOG0336|consen 577 AEELI 581 (629)
T ss_pred HHHHH
Confidence 76653
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.5e-40 Score=359.71 Aligned_cols=239 Identities=31% Similarity=0.509 Sum_probs=218.1
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
++++|+||||++|++++... .+.++++++|||||||++++++|...+..++..+|..+|+++||||++..+..++..++
T Consensus 124 ~~~~IiV~TP~rL~~~~~~~-~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~ 202 (456)
T PRK10590 124 GGVDVLVATPGRLLDLEHQN-AVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLL 202 (456)
T ss_pred CCCcEEEEChHHHHHHHHcC-CcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHc
Confidence 47899999999999988765 56789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
.+|..+.+.... .....+.+++..++...+...|..++......++||||+|+..++.+++.|... ++.+..+||+
T Consensus 203 ~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~ 278 (456)
T PRK10590 203 HNPLEIEVARRN--TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD--GIRSAAIHGN 278 (456)
T ss_pred CCCeEEEEeccc--ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC--CCCEEEEECC
Confidence 999877665432 334567788888888888888888888777789999999999999999999875 8999999999
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHH
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l 245 (564)
|++.+|..+++.|++ ...|||||++++||||| |+|++||+|++|.++.+|+||+|||||.|..|.+++|+++.+..++
T Consensus 279 ~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi-p~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~ 357 (456)
T PRK10590 279 KSQGARTRALADFKSGDIRVLVATDIAARGLDI-EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357 (456)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc-ccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHH
Confidence 999999999999999 99999999999999999 9999999999999999999999999999999999999999998888
Q ss_pred HHHHHc
Q 008461 246 EKLREA 251 (564)
Q Consensus 246 ~~L~~~ 251 (564)
+.++..
T Consensus 358 ~~ie~~ 363 (456)
T PRK10590 358 RDIEKL 363 (456)
T ss_pred HHHHHH
Confidence 877653
No 18
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.7e-40 Score=366.25 Aligned_cols=238 Identities=34% Similarity=0.587 Sum_probs=212.0
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+++|||+|||+|+++|... ..++.++.+|||||||+|+++||...+..|+..+++.+|+++||||+|..+..+++.++
T Consensus 252 ~~~~IlVaTPgrL~d~l~~~-~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~ 330 (545)
T PTZ00110 252 RGVEILIACPGRLIDFLESN-VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLC 330 (545)
T ss_pred cCCCEEEECHHHHHHHHHcC-CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHh
Confidence 46899999999999999875 56789999999999999999999999999999999999999999999999999988877
Q ss_pred C-CCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeec
Q 008461 87 K-DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL 163 (564)
Q Consensus 87 ~-~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~l 163 (564)
. +|..+.+.... ......+.|.+..+....|...|..++... ...++||||+|++.|+.++..|.. .++++..+
T Consensus 331 ~~~~v~i~vg~~~-l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~--~g~~~~~i 407 (545)
T PTZ00110 331 KEEPVHVNVGSLD-LTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRL--DGWPALCI 407 (545)
T ss_pred ccCCEEEEECCCc-cccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHH--cCCcEEEE
Confidence 5 56666554322 233456778888888888899898888765 367999999999999999999986 48999999
Q ss_pred cCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchH
Q 008461 164 YGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 242 (564)
Q Consensus 164 Hg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~ 242 (564)
||+|++.+|..+++.|++ ...|||||++++||||| |+|++||+||+|.++.+|+||+|||||.|+.|.|++|+++.+.
T Consensus 408 hg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi-~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 408 HGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDV-KDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred ECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCc-ccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 999999999999999999 99999999999999999 9999999999999999999999999999999999999999887
Q ss_pred HHHHHHH
Q 008461 243 KMLEKLR 249 (564)
Q Consensus 243 ~~l~~L~ 249 (564)
.....|.
T Consensus 487 ~~~~~l~ 493 (545)
T PTZ00110 487 RLARDLV 493 (545)
T ss_pred HHHHHHH
Confidence 7555553
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.4e-40 Score=366.45 Aligned_cols=240 Identities=30% Similarity=0.515 Sum_probs=218.7
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCC--CCcEEEEeccCChhHHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK--HRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~--~~Q~llfSATl~~~v~~l~~~ 84 (564)
.+++|||+|||+|++++.+...+.+.++++|||||||+|+++||...+..|+..+|. .+|+++||||++..+..++..
T Consensus 133 ~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~ 212 (572)
T PRK04537 133 QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYE 212 (572)
T ss_pred CCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHH
Confidence 468999999999999998766678899999999999999999999999999999987 789999999999999999999
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 164 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH 164 (564)
++.+|..+.+.... .+...+.|.++.+....|+..|..++......++||||+|+..|+.+++.|... ++.+..+|
T Consensus 213 ~l~~p~~i~v~~~~--~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~--g~~v~~lh 288 (572)
T PRK04537 213 HMNEPEKLVVETET--ITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH--GYRVGVLS 288 (572)
T ss_pred HhcCCcEEEecccc--ccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc--CCCEEEEe
Confidence 99888766554332 345667888888888889999999998877889999999999999999999875 89999999
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 165 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 165 g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
|+|++.+|..+++.|++ ...||||||+++||||| |+|++|||||+|.++.+|+||+|||||.|..|.|++|+++.+..
T Consensus 289 g~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDi-p~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~ 367 (572)
T PRK04537 289 GDVPQKKRESLLNRFQKGQLEILVATDVAARGLHI-DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367 (572)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCc-cCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHH
Confidence 99999999999999999 99999999999999999 99999999999999999999999999999999999999998887
Q ss_pred HHHHHHHc
Q 008461 244 MLEKLREA 251 (564)
Q Consensus 244 ~l~~L~~~ 251 (564)
.+..++..
T Consensus 368 ~l~~i~~~ 375 (572)
T PRK04537 368 SLPDIEAY 375 (572)
T ss_pred HHHHHHHH
Confidence 77777554
No 20
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.6e-41 Score=344.51 Aligned_cols=236 Identities=31% Similarity=0.513 Sum_probs=211.4
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHh
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
..+++|+|+|||||.++|... .++++-.++|++||||||+||||...++.|+.++..++||+|||||+|..+..+++..
T Consensus 300 ~~GvHivVATPGRL~DmL~KK-~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSA 378 (610)
T KOG0341|consen 300 RRGVHIVVATPGRLMDMLAKK-IMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSA 378 (610)
T ss_pred hcCeeEEEcCcchHHHHHHHh-hccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhh
Confidence 358999999999999999865 6777888999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccC
Q 008461 86 LKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 165 (564)
Q Consensus 86 l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg 165 (564)
+-.|..|.+..... ..-++.|..-.+..+.|+-.|+..|+.. ..|+||||..+..|..++++|-- .|+.+..+||
T Consensus 379 LVKPvtvNVGRAGA--AsldViQevEyVkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLl--KGVEavaIHG 453 (610)
T KOG0341|consen 379 LVKPVTVNVGRAGA--ASLDVIQEVEYVKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLL--KGVEAVAIHG 453 (610)
T ss_pred cccceEEecccccc--cchhHHHHHHHHHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHH--ccceeEEeec
Confidence 99999988865443 3334445555567788999999998776 58999999999999999999854 5999999999
Q ss_pred CCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH-
Q 008461 166 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK- 243 (564)
Q Consensus 166 ~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~- 243 (564)
|-.|++|...++.|+. +.+||||||+++.|+|| |+|.+|||||+|.++++|+||+|||||.|+.|.+..|++.....
T Consensus 454 GKDQedR~~ai~afr~gkKDVLVATDVASKGLDF-p~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~es 532 (610)
T KOG0341|consen 454 GKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDF-PDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEES 532 (610)
T ss_pred CcchhHHHHHHHHHhcCCCceEEEecchhccCCC-ccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHH
Confidence 9999999999999999 99999999999999999 99999999999999999999999999999999999999986544
Q ss_pred HHHHH
Q 008461 244 MLEKL 248 (564)
Q Consensus 244 ~l~~L 248 (564)
.|-.|
T Consensus 533 vLlDL 537 (610)
T KOG0341|consen 533 VLLDL 537 (610)
T ss_pred HHHHH
Confidence 44333
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-40 Score=351.53 Aligned_cols=237 Identities=34% Similarity=0.525 Sum_probs=212.6
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCc-ccHHHHHHHHHHhCCC----CCcEEEEeccCChhHHH
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPK----HRQTFLFSATQTKSVQD 80 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld-~gf~~~l~~Il~~lp~----~~Q~llfSATl~~~v~~ 80 (564)
.++|||+|||||||.+++..+ .+.++++++|||||||+|+| |||...++.|+..... .+|+++||||.|..+..
T Consensus 200 ~~gcdIlvaTpGrL~d~~e~g-~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~ 278 (482)
T KOG0335|consen 200 KRGCDILVATPGRLKDLIERG-KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQR 278 (482)
T ss_pred ccCccEEEecCchhhhhhhcc-eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhh
Confidence 368999999999999888766 78899999999999999999 9999999999998753 78999999999999999
Q ss_pred HHHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcC----CC-----cEEEEeCChHHHHHHHHHH
Q 008461 81 LARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL----NS-----KILVFLTSCKQVKYVFEAF 151 (564)
Q Consensus 81 l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~----~~-----k~IVF~~t~k~v~~l~e~L 151 (564)
++..++.+- |+.+.......++.++.|.+..|....|...|+.+|.... .. +++|||.|.+.|.++...|
T Consensus 279 l~~~fl~~~-yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l 357 (482)
T KOG0335|consen 279 LAADFLKDN-YIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFL 357 (482)
T ss_pred hHHHHhhcc-ceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHH
Confidence 999988863 3334445556788999999999999999999999997543 23 8999999999999999999
Q ss_pred HhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCC
Q 008461 152 KKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG 230 (564)
Q Consensus 152 ~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~ 230 (564)
.. .++++..+||..+|.+|...++.|+. ...|||||++++||||| |+|++||+||+|.+..+|+||||||||.|+.
T Consensus 358 ~~--~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi-~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~ 434 (482)
T KOG0335|consen 358 SS--NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDI-PNVKHVINYDMPADIDDYVHRIGRTGRVGNG 434 (482)
T ss_pred hc--CCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCC-CCCceeEEeecCcchhhHHHhccccccCCCC
Confidence 87 59999999999999999999999999 99999999999999999 9999999999999999999999999999999
Q ss_pred ceEEEEeCcchHHHHHH
Q 008461 231 GRSVLFLTPTEMKMLEK 247 (564)
Q Consensus 231 G~~il~l~~~e~~~l~~ 247 (564)
|.++.|+........+.
T Consensus 435 G~atsf~n~~~~~i~~~ 451 (482)
T KOG0335|consen 435 GRATSFFNEKNQNIAKA 451 (482)
T ss_pred ceeEEEeccccchhHHH
Confidence 99999999655444433
No 22
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3e-39 Score=357.40 Aligned_cols=237 Identities=26% Similarity=0.470 Sum_probs=211.9
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+++|||||||+|++++... .+.++++.+|||||||+|+++||...+..|+..++ .+|+++||||++..+..++..++
T Consensus 245 ~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~ 322 (518)
T PLN00206 245 QGVELIVGTPGRLIDLLSKH-DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLA 322 (518)
T ss_pred CCCCEEEECHHHHHHHHHcC-CccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhC
Confidence 46899999999999998876 67789999999999999999999999999999996 68999999999999999999999
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 164 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~--~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH 164 (564)
.++..+.+.... .....+.+.++.++...+...|+.++.... ..++||||+|+..++.++..|... .++.+..+|
T Consensus 323 ~~~~~i~~~~~~--~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~-~g~~~~~~H 399 (518)
T PLN00206 323 KDIILISIGNPN--RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV-TGLKALSIH 399 (518)
T ss_pred CCCEEEEeCCCC--CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc-cCcceEEee
Confidence 998877765433 334567788888888888888998887643 468999999999999999999753 488999999
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 165 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 165 g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
|+|++.+|..+++.|++ ...|||||++++||||| |+|++||+||+|.++.+|+||+|||||.|..|.+++|+++.+..
T Consensus 400 g~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDi-p~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~ 478 (518)
T PLN00206 400 GEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDL-LRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRN 478 (518)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCc-ccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHH
Confidence 99999999999999999 99999999999999999 89999999999999999999999999999999999999998876
Q ss_pred HHHHHH
Q 008461 244 MLEKLR 249 (564)
Q Consensus 244 ~l~~L~ 249 (564)
.+..|.
T Consensus 479 ~~~~l~ 484 (518)
T PLN00206 479 LFPELV 484 (518)
T ss_pred HHHHHH
Confidence 555443
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.4e-39 Score=348.05 Aligned_cols=238 Identities=34% Similarity=0.559 Sum_probs=213.4
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCCh-hHHHHHHHh
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK-SVQDLARLS 85 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~-~v~~l~~~~ 85 (564)
++++|||||||+|++++... .+.+.++++|||||||+|+++||...+..|...++...|+++||||++. .+..+....
T Consensus 122 ~~~~IlV~Tp~rl~~~~~~~-~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~ 200 (434)
T PRK11192 122 ENQDIVVATPGRLLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERL 200 (434)
T ss_pred CCCCEEEEChHHHHHHHHcC-CcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHH
Confidence 46899999999999998765 6788999999999999999999999999999999999999999999985 577888888
Q ss_pred cCCCCcccccccccccCCccceeEEEEcC-cccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc
Q 008461 86 LKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 164 (564)
Q Consensus 86 l~~p~~i~v~~~~~~~~p~~l~q~~~~~~-~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH 164 (564)
+.+|..+.+.... .....+.+.+..++ ...|...|..++......++||||+|+..++.++..|.. .++.+..+|
T Consensus 201 ~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~--~~~~~~~l~ 276 (434)
T PRK11192 201 LNDPVEVEAEPSR--RERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRK--AGINCCYLE 276 (434)
T ss_pred ccCCEEEEecCCc--ccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHh--CCCCEEEec
Confidence 8888877654332 33455677777665 467888999998876778999999999999999999987 489999999
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 165 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 165 g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
|+|++.+|..+++.|++ ...|||||++++||||+ |+|++||+||+|.+...|+||+|||||.|..|.+++|++..+..
T Consensus 277 g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDi-p~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~ 355 (434)
T PRK11192 277 GEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDI-DDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHL 355 (434)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEccccccCccC-CCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHH
Confidence 99999999999999999 99999999999999999 99999999999999999999999999999999999999999888
Q ss_pred HHHHHHH
Q 008461 244 MLEKLRE 250 (564)
Q Consensus 244 ~l~~L~~ 250 (564)
++..+..
T Consensus 356 ~~~~i~~ 362 (434)
T PRK11192 356 LLGKIER 362 (434)
T ss_pred HHHHHHH
Confidence 8877754
No 24
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=328.18 Aligned_cols=239 Identities=34% Similarity=0.524 Sum_probs=221.9
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
..|+|+|+||++|+.|+..+....+..|.+||+||||.++..||...+..|.+++|+..|.+++|||++..+..+..+++
T Consensus 144 d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l 223 (569)
T KOG0346|consen 144 DLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFL 223 (569)
T ss_pred cCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhc
Confidence 57999999999999999998777899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc-CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 165 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~-~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg 165 (564)
++|..+.+.+.... .|..++|+++.|...+|+..++.+++-. ..+++|||+||...|-.+--.|.+. |+...+++|
T Consensus 224 ~nPviLkl~e~el~-~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqF--GiksciLNs 300 (569)
T KOG0346|consen 224 HNPVILKLTEGELP-NPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQF--GIKSCILNS 300 (569)
T ss_pred cCCeEEEeccccCC-CcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHh--CcHhhhhcc
Confidence 99999988877654 6899999999999999999999999754 4899999999999999998888874 999999999
Q ss_pred CCCHHHHHHHHHHHhc-cCCeEEEec-----------------------------------ccccCCCcCCCCcEEEEcC
Q 008461 166 RMKQDRRMAIYAQFCE-KRSVLFCTD-----------------------------------VASRGLDFNKAVDWVVQVD 209 (564)
Q Consensus 166 ~m~~~~R~~i~~~F~~-~~~VLVaTd-----------------------------------v~arGLD~pp~V~~VI~~d 209 (564)
.|+...|.-|+++|.. -+.|+|||| -++||||| ..|.+|||||
T Consensus 301 eLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF-~~V~~VlNFD 379 (569)
T KOG0346|consen 301 ELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDF-HHVSNVLNFD 379 (569)
T ss_pred cccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccc-hheeeeeecC
Confidence 9999999999999999 899999999 24899999 9999999999
Q ss_pred CCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHHH
Q 008461 210 CPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLR 249 (564)
Q Consensus 210 ~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~ 249 (564)
+|.++..||||+|||||+++.|.++.|+.|.+..-...|+
T Consensus 380 ~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le 419 (569)
T KOG0346|consen 380 FPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLE 419 (569)
T ss_pred CCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHH
Confidence 9999999999999999999999999999999887334433
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8e-38 Score=342.81 Aligned_cols=239 Identities=33% Similarity=0.536 Sum_probs=215.0
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCC--CCcEEEEeccCChhHHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK--HRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~--~~Q~llfSATl~~~v~~l~~~ 84 (564)
+.++|||+||++|++++... .+.++++++|||||||++++++|...+..|+..++. .+|+++||||++..+..++..
T Consensus 212 ~~~~Iiv~TP~~Ll~~~~~~-~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~ 290 (475)
T PRK01297 212 RFCDILVATPGRLLDFNQRG-EVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQ 290 (475)
T ss_pred CCCCEEEECHHHHHHHHHcC-CcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHH
Confidence 46899999999999888765 566899999999999999999999999999999875 579999999999999999999
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 164 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH 164 (564)
++.+|..+.+.... .....+.+++..+....+...|..++......++||||+++..++.+++.|... ++.+..+|
T Consensus 291 ~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~--~~~~~~~~ 366 (475)
T PRK01297 291 WTTDPAIVEIEPEN--VASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD--GINAAQLS 366 (475)
T ss_pred hccCCEEEEeccCc--CCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEE
Confidence 99999877664433 334556777777788889999999998877789999999999999999999874 88999999
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 165 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 165 g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
|+|++.+|..+++.|++ ...|||||++++||||| |+|++||+|++|.++.+|+||+|||||.|..|.+++|+.+.+..
T Consensus 367 g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi-~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~ 445 (475)
T PRK01297 367 GDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI-DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAF 445 (475)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc-cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHH
Confidence 99999999999999999 99999999999999999 99999999999999999999999999999999999999998877
Q ss_pred HHHHHHHc
Q 008461 244 MLEKLREA 251 (564)
Q Consensus 244 ~l~~L~~~ 251 (564)
++..+++.
T Consensus 446 ~~~~~~~~ 453 (475)
T PRK01297 446 QLPEIEEL 453 (475)
T ss_pred HHHHHHHH
Confidence 78877664
No 26
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-40 Score=343.82 Aligned_cols=239 Identities=34% Similarity=0.522 Sum_probs=205.7
Q ss_pred CCCcEEEEcHHHHHHHHhcCCC--CCCCCcceEEEeccCccCcccHHHHHHHHHHhCC-----CCCcEEEEeccCChhHH
Q 008461 7 NELNILVCTPGRLLQHMDETPN--FDCSQLQILILDEADRILDVGFKKALNAIVSQLP-----KHRQTFLFSATQTKSVQ 79 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~--~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp-----~~~Q~llfSATl~~~v~ 79 (564)
..++|+|||||||+.++.+... -++..+++|||||||||++.|+...+..|+..|. ..+|++.||||++-...
T Consensus 312 ~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~ 391 (731)
T KOG0347|consen 312 QRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQ 391 (731)
T ss_pred cCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhc
Confidence 4799999999999999976533 2578999999999999999999999999998875 36899999999763222
Q ss_pred ---------------------HHH-HHhc-CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEE
Q 008461 80 ---------------------DLA-RLSL-KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILV 136 (564)
Q Consensus 80 ---------------------~l~-~~~l-~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IV 136 (564)
.+. ...+ .+|.+|.+... ..+...+....+.|+..+|--.|+.||..+ ++++||
T Consensus 392 ~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q--~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlV 468 (731)
T KOG0347|consen 392 QPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQ--SATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLV 468 (731)
T ss_pred ChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcc--hhHHHHHHHHhhcCCccccceeEEEEEeec-CCceEE
Confidence 111 1222 35655555433 345566777778899999999999999777 799999
Q ss_pred EeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHh
Q 008461 137 FLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVA 215 (564)
Q Consensus 137 F~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~ 215 (564)
|||+...+..|+-+|..+ +++.+.||+.|.|..|...+++|++ ..+|||||||||||||| |+|.+||+|-.|.+.+
T Consensus 469 F~NsId~vKRLt~~L~~L--~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDI-p~V~HVIHYqVPrtse 545 (731)
T KOG0347|consen 469 FCNSIDCVKRLTVLLNNL--DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDI-PGVQHVIHYQVPRTSE 545 (731)
T ss_pred EechHHHHHHHHHHHhhc--CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCC-CCcceEEEeecCCccc
Confidence 999999999999999987 9999999999999999999999999 99999999999999999 9999999999999999
Q ss_pred hHHHHhcccccCCCCceEEEEeCcchHHHHHHHHHc
Q 008461 216 SYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 251 (564)
Q Consensus 216 ~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~ 251 (564)
.|+||.|||+|++..|.+++|+.|.+...+.+|...
T Consensus 546 iYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~kt 581 (731)
T KOG0347|consen 546 IYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKT 581 (731)
T ss_pred eeEecccccccccCCCeEEEEeChHHhHHHHHHHHH
Confidence 999999999999999999999999998888777553
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-38 Score=328.25 Aligned_cols=236 Identities=33% Similarity=0.512 Sum_probs=213.3
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.++.|||||||||++++.-. ..++.++.+|||||||+|.++||..++..|..++.+++|+|+||||++..+..+++.+|
T Consensus 345 ~g~EivVaTPgRlid~VkmK-atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L 423 (731)
T KOG0339|consen 345 EGAEIVVATPGRLIDMVKMK-ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDIL 423 (731)
T ss_pred cCCeEEEechHHHHHHHHhh-cccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHh
Confidence 58999999999999999866 67899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCCccceeEEEEcC-cccHHHHHHHHHHHcC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLWSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 164 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~-~~~Kl~~L~~~L~~~~-~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH 164 (564)
.+|..+.... .......+.|.+.+|+ ...|+..|+.-|.... .+++|||+.....++.+...|.. .++.|..+|
T Consensus 424 ~dpVrvVqg~--vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lkl--k~~~v~llh 499 (731)
T KOG0339|consen 424 SDPVRVVQGE--VGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKL--KGFNVSLLH 499 (731)
T ss_pred cCCeeEEEee--hhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcc--ccceeeeec
Confidence 9998876652 3344566777777776 4678888887775543 57999999999999999999975 599999999
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 165 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 165 g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
|+|.|.+|.+++.+|+. .+.|||+||+++||+|| |.+..|||||+-.++++|.||+|||||+|..|.++.++++.+..
T Consensus 500 gdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI-~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 500 GDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDI-PSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred CchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCc-cccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHH
Confidence 99999999999999999 89999999999999999 89999999999999999999999999999999999999999887
Q ss_pred HHHHH
Q 008461 244 MLEKL 248 (564)
Q Consensus 244 ~l~~L 248 (564)
+.-.|
T Consensus 579 fAG~L 583 (731)
T KOG0339|consen 579 FAGHL 583 (731)
T ss_pred HhhHH
Confidence 55444
No 28
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-38 Score=319.44 Aligned_cols=238 Identities=26% Similarity=0.472 Sum_probs=217.3
Q ss_pred CcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCc-ccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhcC
Q 008461 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK 87 (564)
Q Consensus 9 ~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld-~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l~ 87 (564)
-.|+|+|||.+++.+.....+++..++++|+||||.+++ .||+++-..|...+|++.|+++||||....+..++...++
T Consensus 208 eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivp 287 (477)
T KOG0332|consen 208 EQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVP 287 (477)
T ss_pred hheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcC
Confidence 579999999999999886788999999999999997775 5899999999999999999999999999999999999999
Q ss_pred CCCcccccccccccCCccceeEEEEcCc-ccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 88 DPQYLSVHEESVTATPNRLQQTAMIVPL-EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 88 ~p~~i~v~~~~~~~~p~~l~q~~~~~~~-~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
+|..+.+..... ....+.|+|+.|+. ..|+..|..+.....-++.||||.|++++.++|..+... |..|.++||+
T Consensus 288 n~n~i~Lk~eel--~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~--Gh~V~~l~G~ 363 (477)
T KOG0332|consen 288 NANVIILKREEL--ALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE--GHQVSLLHGD 363 (477)
T ss_pred CCceeeeehhhc--cccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc--CceeEEeecc
Confidence 998887765543 45678899999985 679999998776666789999999999999999999985 9999999999
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC------CHhhHHHHhcccccCCCCceEEEEeCc
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE------DVASYIHRVGRTARYNSGGRSVLFLTP 239 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~------s~~~YiqRiGRtgR~g~~G~~il~l~~ 239 (564)
|...+|..++..|+. ..+|||+|++++||||+ +.|+.|||||+|. +.++|+||+|||||+|+.|.++.|+..
T Consensus 364 l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv-~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~ 442 (477)
T KOG0332|consen 364 LTVEQRAAIIDRFREGKEKVLITTNVCARGIDV-AQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDD 442 (477)
T ss_pred chhHHHHHHHHHHhcCcceEEEEechhhccccc-ceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecc
Confidence 999999999999999 99999999999999999 8999999999994 899999999999999999999999987
Q ss_pred chHH-HHHHHHHc
Q 008461 240 TEMK-MLEKLREA 251 (564)
Q Consensus 240 ~e~~-~l~~L~~~ 251 (564)
.+.. +++.++++
T Consensus 443 ~~s~~~mn~iq~~ 455 (477)
T KOG0332|consen 443 KDSMNIMNKIQKH 455 (477)
T ss_pred cCcHHHHHHHHHH
Confidence 6655 88888776
No 29
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-38 Score=319.04 Aligned_cols=248 Identities=27% Similarity=0.508 Sum_probs=231.9
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
..++|+|+||||+++++... .+....++++|+||||.++..||...+..|.+++|++.|++++|||+|.++..+.+.++
T Consensus 144 ~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~ 222 (397)
T KOG0327|consen 144 DKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFM 222 (397)
T ss_pred cCceeecCCchhHHHhhccc-cccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhc
Confidence 46899999999999988877 77788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
.+|..+.+.... .+...+.|+|+.+..+.|+.+|+.+.. .-.+.+|||||++.+..+...|.. .++.+.++||.
T Consensus 223 ~~pv~i~vkk~~--ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~--~~~~~s~~~~d 296 (397)
T KOG0327|consen 223 REPVRILVKKDE--LTLEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRA--HGFTVSAIHGD 296 (397)
T ss_pred cCceEEEecchh--hhhhheeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhh--CCceEEEeecc
Confidence 999999887665 567889999999999999999999998 468999999999999999999965 49999999999
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHH
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l 245 (564)
|.+.+|..++..|+. ..+|||+|++++||+|+ ..+..||+|++|....+|+||+||+||+|++|.++.|++..+...+
T Consensus 297 ~~q~~R~~~~~ef~~gssrvlIttdl~argidv-~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~l 375 (397)
T KOG0327|consen 297 MEQNERDTLMREFRSGSSRVLITTDLLARGIDV-QQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDL 375 (397)
T ss_pred cchhhhhHHHHHhhcCCceEEeeccccccccch-hhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHH
Confidence 999999999999999 99999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCCcccccccc
Q 008461 246 EKLREA-KIPIHFTKANT 262 (564)
Q Consensus 246 ~~L~~~-~i~i~~~~~~~ 262 (564)
+.+++. +.+|++++.+.
T Consensus 376 k~ie~~y~~~i~e~p~~~ 393 (397)
T KOG0327|consen 376 KDIEKFYNTPIEELPSNF 393 (397)
T ss_pred HhHHHhcCCcceecccch
Confidence 999876 88888876543
No 30
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.2e-37 Score=328.47 Aligned_cols=246 Identities=28% Similarity=0.523 Sum_probs=216.8
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+++|+|+||++|.+++... .+.++++++||+||||++++.+|...+..++..+++..|++++|||+|+.+..+...++
T Consensus 145 ~~~~Ivv~Tp~~l~~~l~~~-~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 223 (401)
T PTZ00424 145 AGVHMVVGTPGRVYDMIDKR-HLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFM 223 (401)
T ss_pred CCCCEEEECcHHHHHHHHhC-CcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHc
Confidence 35799999999999988765 56789999999999999999999999999999999999999999999999999988888
Q ss_pred CCCCcccccccccccCCccceeEEEEcCc-ccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPL-EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 165 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~-~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg 165 (564)
.+|..+.+.... .....+.++++.++. ..+...+..++......++||||+|+..++.+++.|... ++.+..+||
T Consensus 224 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~--~~~~~~~h~ 299 (401)
T PTZ00424 224 RDPKRILVKKDE--LTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER--DFTVSCMHG 299 (401)
T ss_pred CCCEEEEeCCCC--cccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC--CCcEEEEeC
Confidence 888766554322 234566777777764 457778888887776789999999999999999999874 889999999
Q ss_pred CCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHH
Q 008461 166 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244 (564)
Q Consensus 166 ~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~ 244 (564)
+|++.+|..+++.|++ ...|||||+++++|||+ |+|++||+||+|.+...|+||+||+||.|+.|.|++|+++.+...
T Consensus 300 ~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDi-p~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 300 DMDQKDRDLIMREFRSGSTRVLITTDLLARGIDV-QQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCc-ccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHH
Confidence 9999999999999999 99999999999999999 999999999999999999999999999999999999999999888
Q ss_pred HHHHHHc-CCCcccc
Q 008461 245 LEKLREA-KIPIHFT 258 (564)
Q Consensus 245 l~~L~~~-~i~i~~~ 258 (564)
+..++.. +..++..
T Consensus 379 ~~~~e~~~~~~~~~~ 393 (401)
T PTZ00424 379 LKEIERHYNTQIEEM 393 (401)
T ss_pred HHHHHHHHCCccccc
Confidence 8888664 5555444
No 31
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-37 Score=322.09 Aligned_cols=243 Identities=28% Similarity=0.494 Sum_probs=214.2
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCC-------------------------
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP------------------------- 62 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp------------------------- 62 (564)
.++|||+|||||.+||.+.+.|++.+|+++||||||||++..|+..+..+...+.
T Consensus 270 ~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e 349 (620)
T KOG0350|consen 270 RIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSE 349 (620)
T ss_pred ccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHH
Confidence 4599999999999999999999999999999999999999999887776655431
Q ss_pred ---------CCCcEEEEeccCChhHHHHHHHhcCCCCcccccc--cccccCCccceeEEEEcCcccHHHHHHHHHHHcCC
Q 008461 63 ---------KHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHE--ESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLN 131 (564)
Q Consensus 63 ---------~~~Q~llfSATl~~~v~~l~~~~l~~p~~i~v~~--~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~ 131 (564)
+..+.++||||++..-..+..+-+..|....+.. ......|..+.+.++++....|--.++.+|.....
T Consensus 350 ~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~ 429 (620)
T KOG0350|consen 350 LLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKL 429 (620)
T ss_pred HHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhc
Confidence 1224688999999888889999999997766653 24467899999999999999999999999999989
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEc
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQV 208 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~ 208 (564)
.++|+|+++..++..++..|.-.+ +.+.+.++.|+++...|...++.|.. +..||||||+++||||+ .+|+.||||
T Consensus 430 ~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv-~~v~~VINY 508 (620)
T KOG0350|consen 430 NRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDV-NDVDNVINY 508 (620)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcc-cccceEeec
Confidence 999999999999999999887322 45678889999999999999999999 99999999999999999 899999999
Q ss_pred CCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH-HHHHHHHc
Q 008461 209 DCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK-MLEKLREA 251 (564)
Q Consensus 209 d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~-~l~~L~~~ 251 (564)
|+|.+..+|+||+|||||+|+.|.|+.++...+.. |.+-|...
T Consensus 509 d~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 509 DPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred CCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHh
Confidence 99999999999999999999999999999999888 55555443
No 32
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.6e-36 Score=323.45 Aligned_cols=234 Identities=27% Similarity=0.473 Sum_probs=212.7
Q ss_pred ccccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCc-ccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHH
Q 008461 3 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDL 81 (564)
Q Consensus 3 k~r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld-~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l 81 (564)
+.|+..++|+|||||||++++... .+++++++++||||||.|++ ..|+.+++.|+..||..+|++.||||.|..+..+
T Consensus 138 ~~rlk~~rIvIGtPGRi~qL~el~-~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~ 216 (980)
T KOG4284|consen 138 LIRLKQTRIVIGTPGRIAQLVELG-AMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNL 216 (980)
T ss_pred hhhhhhceEEecCchHHHHHHHhc-CCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHH
Confidence 467889999999999998766654 89999999999999999999 4599999999999999999999999999999999
Q ss_pred HHHhcCCCCcccccccccccCCccceeEEEEcCcc--------cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHh
Q 008461 82 ARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE--------QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKK 153 (564)
Q Consensus 82 ~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~--------~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~ 153 (564)
...++++|..|....... ..-.+.|+|+..+.. .|+..|-.+++..+-.+.||||+....|+-+..+|..
T Consensus 217 Lsk~mrdp~lVr~n~~d~--~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~s 294 (980)
T KOG4284|consen 217 LSKFMRDPALVRFNADDV--QLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKS 294 (980)
T ss_pred HHHHhcccceeecccCCc--eeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhc
Confidence 999999999998866543 345677777766543 4778888888888888999999999999999999987
Q ss_pred hCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCce
Q 008461 154 LRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGR 232 (564)
Q Consensus 154 l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~ 232 (564)
.|+.|.++.|.|+|.+|..++..++. ..+|||+||+.+||||- |.|++|||.|+|.+-.+|.||||||||+|..|.
T Consensus 295 --sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa-~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~ 371 (980)
T KOG4284|consen 295 --SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDA-DNVNLVVNIDAPADEETYFHRIGRAGRFGAHGA 371 (980)
T ss_pred --cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCc-cccceEEecCCCcchHHHHHHhhhcccccccce
Confidence 59999999999999999999999999 99999999999999999 999999999999999999999999999999999
Q ss_pred EEEEeCcchH
Q 008461 233 SVLFLTPTEM 242 (564)
Q Consensus 233 ~il~l~~~e~ 242 (564)
++.|+.....
T Consensus 372 aVT~~~~~~e 381 (980)
T KOG4284|consen 372 AVTLLEDERE 381 (980)
T ss_pred eEEEeccchh
Confidence 9999987655
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-36 Score=310.81 Aligned_cols=311 Identities=29% Similarity=0.414 Sum_probs=252.8
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+++||||||||++.+.. ...+.++.+.|||+||||+|+.|||+.++..|+..+|.++|+++||||+|..+.++++.++
T Consensus 139 ~npDii~ATpgr~~h~~v-em~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl 217 (529)
T KOG0337|consen 139 ENPDIIIATPGRLLHLGV-EMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGL 217 (529)
T ss_pred cCCCEEEecCceeeeeeh-heeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccC
Confidence 379999999999974443 3457899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 165 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~-~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg 165 (564)
.+|..|.+..+. .....++..+..+...+|..+|+.++.... +.++||||+|...|+++...|+.. |+.+..++|
T Consensus 218 ~~p~lVRldvet--kise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~--g~~~s~iys 293 (529)
T KOG0337|consen 218 VPPVLVRLDVET--KISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF--GGEGSDIYS 293 (529)
T ss_pred CCCceEEeehhh--hcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhc--CCCcccccc
Confidence 999998866554 445778889999999999999999998875 468999999999999999999985 899999999
Q ss_pred CCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHH
Q 008461 166 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244 (564)
Q Consensus 166 ~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~ 244 (564)
.|++..|...+..|+. +..+||.||+++||+|+ |..+.|||||+|.+...|+||+||++|+|+.|.+|.|+.+.+..+
T Consensus 294 slD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~di-plldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~y 372 (529)
T KOG0337|consen 294 SLDQEARKINGRDFRGRKTSILVVTDVAARGLDI-PLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPY 372 (529)
T ss_pred ccChHhhhhccccccCCccceEEEehhhhccCCC-ccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchh
Confidence 9999999999999999 99999999999999999 999999999999999999999999999999999999999999987
Q ss_pred HHHHHHc-CCCcccc-------cc--------ccccchhHHHHHHHHHhcChhHHH---HHHHHHHHHHHHHhccccccc
Q 008461 245 LEKLREA-KIPIHFT-------KA--------NTKRLQPVSGLLAALLVKYPDMQH---RAQKAFITYLRSVHIQKDKEV 305 (564)
Q Consensus 245 l~~L~~~-~i~i~~~-------~~--------~~~~~~~i~~~l~~~~~~~~~l~~---~a~~af~sy~rs~~~~~~k~i 305 (564)
+--|... +-|+... +. ++........-.++++..+.++.. .|-+|+.-|.|+-...+...+
T Consensus 373 l~DL~lflgr~~~~~~~~~e~d~~~t~vigr~P~~~v~~~~~~~q~~~~~~~el~~l~~~a~ka~~~y~rtr~~~s~es~ 452 (529)
T KOG0337|consen 373 LLDLQLFLGRPLIFAISHFEYDCDDTTVIGRSPQSLVSLESEGHQSILESNRELQVLARTADKAEMLYTRTRPSPSPESL 452 (529)
T ss_pred hhhhhhhcCCceeeccchhhhccccceeeccCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCHHHH
Confidence 7666554 3222111 10 111112233445566666666554 456677778887654443333
Q ss_pred ccccCCCHHHHHHhcCCCCCCcc
Q 008461 306 FDVTKLSIDEFSASLGLPMTPKI 328 (564)
Q Consensus 306 f~~~~l~l~~~A~s~GL~~~P~i 328 (564)
=..++ +-.+=||+..++-
T Consensus 453 kR~ke-----~~~~~g~~~~~~~ 470 (529)
T KOG0337|consen 453 KRAKE-----MISSKGLHPRFKS 470 (529)
T ss_pred HHHHh-----hhcccCCCccccc
Confidence 33333 3334466655443
No 34
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-35 Score=326.64 Aligned_cols=238 Identities=31% Similarity=0.503 Sum_probs=213.6
Q ss_pred CCCcEEEEcHHHHHHHHhcC--CCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDET--PNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~--~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
+++.|+||||||+++++..+ +..++..+.++|+||||+|+++||.+++..|+.++++.+|+++||||+|..+..+++.
T Consensus 487 Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~ 566 (997)
T KOG0334|consen 487 RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARK 566 (997)
T ss_pred cCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHH
Confidence 46999999999999998654 3344556669999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcC-cccHHHHHHHHHHHcC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCeee
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLWSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC 162 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~-~~~Kl~~L~~~L~~~~-~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~ 162 (564)
.++.|..+.+... ......++|.+.+|+ ...|+..|..+|.... ..++||||.++..|..+...|.+. |+++..
T Consensus 567 vl~~Pveiiv~~~--svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a--g~~~~s 642 (997)
T KOG0334|consen 567 VLKKPVEIIVGGR--SVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA--GYNCDS 642 (997)
T ss_pred hhcCCeeEEEccc--eeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc--Ccchhh
Confidence 9999988777643 345677888999998 8899999999997644 789999999999999999999874 999999
Q ss_pred ccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcch
Q 008461 163 LYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241 (564)
Q Consensus 163 lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e 241 (564)
+||+.+|..|..+++.|++ ...+||||++++||||+ +.+.+|||||||.....|+||+|||||+|+.|.|++|++|.+
T Consensus 643 lHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv-~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 643 LHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDV-KELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred hcCCCchHHHHhHHHHHhccCceEEEehhhhhccccc-ccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHH
Confidence 9999999999999999999 99999999999999999 899999999999999999999999999999999999999966
Q ss_pred HHHHHHHH
Q 008461 242 MKMLEKLR 249 (564)
Q Consensus 242 ~~~l~~L~ 249 (564)
..+...|.
T Consensus 722 ~~~a~dl~ 729 (997)
T KOG0334|consen 722 LKYAGDLC 729 (997)
T ss_pred hhhHHHHH
Confidence 55544443
No 35
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.2e-33 Score=306.11 Aligned_cols=233 Identities=21% Similarity=0.317 Sum_probs=184.0
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCC-CCCCcceEEEeccCccCccc--HHHHHHHH---HHhCCCCCcEEEEeccCChhHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNF-DCSQLQILILDEADRILDVG--FKKALNAI---VSQLPKHRQTFLFSATQTKSVQD 80 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~-~~~~L~~lVlDEAD~lld~g--f~~~l~~I---l~~lp~~~Q~llfSATl~~~v~~ 80 (564)
+.++|+++||+++.........+ ...++.+|||||||++++|| |+..+..| ...+| +.|++++|||+++.+..
T Consensus 100 ~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~ 178 (470)
T TIGR00614 100 GKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFP-NVPIMALTATASPSVRE 178 (470)
T ss_pred CCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcC-CCceEEEecCCCHHHHH
Confidence 46899999999975332100112 45789999999999999998 66665543 44554 78999999999998765
Q ss_pred HHHH--hcCCCCcccccccccccCCccceeEEEEcCc-ccHHHHHHHHHH-HcCCCcEEEEeCChHHHHHHHHHHHhhCC
Q 008461 81 LARL--SLKDPQYLSVHEESVTATPNRLQQTAMIVPL-EQKLDMLWSFIK-AHLNSKILVFLTSCKQVKYVFEAFKKLRP 156 (564)
Q Consensus 81 l~~~--~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~-~~Kl~~L~~~L~-~~~~~k~IVF~~t~k~v~~l~e~L~~l~~ 156 (564)
.... .+.+|..+..... ..++ .|.+.+. ...+..+..++. .+.+..+||||+|++.++.++..|...
T Consensus 179 di~~~l~l~~~~~~~~s~~-----r~nl--~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~-- 249 (470)
T TIGR00614 179 DILRQLNLKNPQIFCTSFD-----RPNL--YYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNL-- 249 (470)
T ss_pred HHHHHcCCCCCcEEeCCCC-----CCCc--EEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhc--
Confidence 4333 3445554432111 1222 2222222 245667777776 344566799999999999999999875
Q ss_pred CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEE
Q 008461 157 GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 235 (564)
Q Consensus 157 gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il 235 (564)
|+.+..+||+|++.+|..+++.|+. ...|||||+++++|||+ |+|++||+|++|.+++.|+||+|||||.|..|.|++
T Consensus 250 g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~-p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~ 328 (470)
T TIGR00614 250 GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINK-PDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHL 328 (470)
T ss_pred CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCc-ccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEE
Confidence 8999999999999999999999999 99999999999999999 999999999999999999999999999999999999
Q ss_pred EeCcchHHHHHHHHH
Q 008461 236 FLTPTEMKMLEKLRE 250 (564)
Q Consensus 236 ~l~~~e~~~l~~L~~ 250 (564)
|+++.+...++.+..
T Consensus 329 ~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 329 FYAPADINRLRRLLM 343 (470)
T ss_pred EechhHHHHHHHHHh
Confidence 999999987777755
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=8.9e-33 Score=316.24 Aligned_cols=265 Identities=17% Similarity=0.230 Sum_probs=196.5
Q ss_pred CCCcEEEEcHHHHHHHHhcC-C--CCCCCCcceEEEeccCccCcccHHHHHHHHHHh-------CCCCCcEEEEeccCCh
Q 008461 7 NELNILVCTPGRLLQHMDET-P--NFDCSQLQILILDEADRILDVGFKKALNAIVSQ-------LPKHRQTFLFSATQTK 76 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~-~--~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~-------lp~~~Q~llfSATl~~ 76 (564)
.+++|||+||++|...+... . ...+++|++|||||||++.+ .|+..+..++.. ++.++|+++||||+++
T Consensus 128 ~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n 206 (742)
T TIGR03817 128 EHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTAD 206 (742)
T ss_pred cCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCC
Confidence 46899999999986433221 1 11268999999999999977 377665555444 4667899999999999
Q ss_pred hHHHHHHHhcCCCCcccccccccccCCccceeEEEEcCc-----------------ccHHHHHHHHHHHcCCCcEEEEeC
Q 008461 77 SVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPL-----------------EQKLDMLWSFIKAHLNSKILVFLT 139 (564)
Q Consensus 77 ~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~-----------------~~Kl~~L~~~L~~~~~~k~IVF~~ 139 (564)
... ++...+..|..+ +.... .|....+.++..+. ..+...+..++.. +.++||||+
T Consensus 207 ~~~-~~~~l~g~~~~~-i~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~ 279 (742)
T TIGR03817 207 PAA-AASRLIGAPVVA-VTEDG---SPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVR 279 (742)
T ss_pred HHH-HHHHHcCCCeEE-ECCCC---CCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcC
Confidence 866 455556666433 22211 12222223222221 2355566666654 579999999
Q ss_pred ChHHHHHHHHHHHhhC----C--CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC
Q 008461 140 SCKQVKYVFEAFKKLR----P--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE 212 (564)
Q Consensus 140 t~k~v~~l~e~L~~l~----~--gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~ 212 (564)
|++.|+.++..+.... + +..+..+||+|.+.+|..++++|++ +..+|||||+++||||| |+|++||||++|.
T Consensus 280 sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI-~~vd~VI~~~~P~ 358 (742)
T TIGR03817 280 SRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDI-SGLDAVVIAGFPG 358 (742)
T ss_pred CHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCc-ccccEEEEeCCCC
Confidence 9999999999887642 1 4578899999999999999999999 99999999999999999 8999999999999
Q ss_pred CHhhHHHHhcccccCCCCceEEEEeC--cchHHHHHHHHHc-CCCccccccccccchhHHHHHHHHHhcCh
Q 008461 213 DVASYIHRVGRTARYNSGGRSVLFLT--PTEMKMLEKLREA-KIPIHFTKANTKRLQPVSGLLAALLVKYP 280 (564)
Q Consensus 213 s~~~YiqRiGRtgR~g~~G~~il~l~--~~e~~~l~~L~~~-~i~i~~~~~~~~~~~~i~~~l~~~~~~~~ 280 (564)
+..+|+||+|||||.|+.|.+++++. +.+..++...+.. +.+++...+++....-+..++...+...|
T Consensus 359 s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~~~~~~n~~il~~hl~~aa~e~~ 429 (742)
T TIGR03817 359 TRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEATVFDPDNPYVLGPHLCCAAAELP 429 (742)
T ss_pred CHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccceeCCCcHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999987 4455566655433 56666666655555555666666665543
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.3e-32 Score=315.99 Aligned_cols=235 Identities=18% Similarity=0.278 Sum_probs=184.6
Q ss_pred CCCcEEEEcHHHHHH--HHhcC-CCC-CCCCcceEEEeccCccCccc--HHHHHHHH--HHhCCCCCcEEEEeccCChhH
Q 008461 7 NELNILVCTPGRLLQ--HMDET-PNF-DCSQLQILILDEADRILDVG--FKKALNAI--VSQLPKHRQTFLFSATQTKSV 78 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~--~L~~~-~~~-~~~~L~~lVlDEAD~lld~g--f~~~l~~I--l~~lp~~~Q~llfSATl~~~v 78 (564)
+.++|||+||++|.. .+.+. ..+ ....+.+|||||||++++|| |+..+..+ +....+..|+++||||++..+
T Consensus 551 g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V 630 (1195)
T PLN03137 551 SKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASV 630 (1195)
T ss_pred CCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHH
Confidence 578999999999852 12111 111 13458999999999999998 88777653 444445789999999999998
Q ss_pred HHHHHHhcC--CCCcccccccccccCCccceeEEEEcCccc-HHHHHHHHHHHc-CCCcEEEEeCChHHHHHHHHHHHhh
Q 008461 79 QDLARLSLK--DPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKL 154 (564)
Q Consensus 79 ~~l~~~~l~--~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~-Kl~~L~~~L~~~-~~~k~IVF~~t~k~v~~l~e~L~~l 154 (564)
...+...+. ++..+.. . ....+ .+|.+++... .+..+..++..+ .....||||+|++.|+.+++.|...
T Consensus 631 ~eDI~~~L~l~~~~vfr~---S--f~RpN--L~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~ 703 (1195)
T PLN03137 631 KEDVVQALGLVNCVVFRQ---S--FNRPN--LWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF 703 (1195)
T ss_pred HHHHHHHcCCCCcEEeec---c--cCccc--eEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC
Confidence 874443333 3322211 1 11122 3444444433 346677777654 3678999999999999999999875
Q ss_pred CCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceE
Q 008461 155 RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 233 (564)
Q Consensus 155 ~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~ 233 (564)
|+.+..|||+|++.+|..+++.|.. ...|||||++++||||+ |+|++||||++|.+++.|+||+|||||.|..|.|
T Consensus 704 --Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDk-PDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~c 780 (1195)
T PLN03137 704 --GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINK-PDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSC 780 (1195)
T ss_pred --CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCc-cCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceE
Confidence 9999999999999999999999999 99999999999999999 9999999999999999999999999999999999
Q ss_pred EEEeCcchHHHHHHHHHc
Q 008461 234 VLFLTPTEMKMLEKLREA 251 (564)
Q Consensus 234 il~l~~~e~~~l~~L~~~ 251 (564)
++|+.+.+...+..|...
T Consensus 781 ILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 781 VLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred EEEecHHHHHHHHHHHhc
Confidence 999999988877777654
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.6e-32 Score=308.92 Aligned_cols=233 Identities=20% Similarity=0.312 Sum_probs=188.3
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCccc--HHHHHH---HHHHhCCCCCcEEEEeccCChhHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG--FKKALN---AIVSQLPKHRQTFLFSATQTKSVQDL 81 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~g--f~~~l~---~Il~~lp~~~Q~llfSATl~~~v~~l 81 (564)
+.++|+++||++|+...... .+...++++|||||||++++|| |+..+. .+...+| +.|++++|||++..+...
T Consensus 114 g~~~il~~tPe~l~~~~~~~-~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p-~~~~v~lTAT~~~~~~~d 191 (607)
T PRK11057 114 GQIKLLYIAPERLMMDNFLE-HLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQD 191 (607)
T ss_pred CCCcEEEEChHHhcChHHHH-HHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCC-CCcEEEEecCCChhHHHH
Confidence 56899999999997322111 2334578999999999999998 665544 4455554 789999999999887653
Q ss_pred H--HHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCC
Q 008461 82 A--RLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIP 159 (564)
Q Consensus 82 ~--~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~ 159 (564)
. .+.+.+|....... ...++ .|.++....++..+..++....+.++||||+|++.|+.++..|... |+.
T Consensus 192 i~~~l~l~~~~~~~~~~-----~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~--g~~ 262 (607)
T PRK11057 192 IVRLLGLNDPLIQISSF-----DRPNI--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR--GIS 262 (607)
T ss_pred HHHHhCCCCeEEEECCC-----CCCcc--eeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC--CCC
Confidence 2 23345554332111 11222 3444555566778888888888899999999999999999999885 899
Q ss_pred eeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeC
Q 008461 160 LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238 (564)
Q Consensus 160 v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~ 238 (564)
+..+||+|++.+|..+++.|+. ...|||||+++++|||+ |+|++||+||+|.+.++|+||+|||||.|..|.|++|++
T Consensus 263 v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDi-p~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~ 341 (607)
T PRK11057 263 AAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINK-PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYD 341 (607)
T ss_pred EEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCC-CCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeC
Confidence 9999999999999999999999 99999999999999999 999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHc
Q 008461 239 PTEMKMLEKLREA 251 (564)
Q Consensus 239 ~~e~~~l~~L~~~ 251 (564)
+.+...++++...
T Consensus 342 ~~d~~~~~~~~~~ 354 (607)
T PRK11057 342 PADMAWLRRCLEE 354 (607)
T ss_pred HHHHHHHHHHHhc
Confidence 9998888777654
No 39
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=292.40 Aligned_cols=239 Identities=30% Similarity=0.454 Sum_probs=215.0
Q ss_pred CCcEEEEcHHHHHHHHhcC-CCCCCCCcceEEEeccCccCcc-cHHHHHHHHHHhCC-CCCcEEEEeccCChhHHHHHHH
Q 008461 8 ELNILVCTPGRLLQHMDET-PNFDCSQLQILILDEADRILDV-GFKKALNAIVSQLP-KHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~-~~~~~~~L~~lVlDEAD~lld~-gf~~~l~~Il~~lp-~~~Q~llfSATl~~~v~~l~~~ 84 (564)
.++|+|+||-||..++... +.++++++.++|+||||++++. +|..++..|+..+. +...+-+||||++..+...+..
T Consensus 262 k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~ 341 (593)
T KOG0344|consen 262 KYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAEL 341 (593)
T ss_pred HHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHH
Confidence 4689999999999999875 3578999999999999999999 99999999999875 3567889999999999999999
Q ss_pred hcCCCCcccccccccccCCccceeEEEEc-CcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeec
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIV-PLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL 163 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~-~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~l 163 (564)
...++..+.+...+.. ...+.|..+.| ....|+..+..++....+.|++||+.+...+..|++.|. .++++.+.++
T Consensus 342 i~~~~~~vivg~~~sa--~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vI 418 (593)
T KOG0344|consen 342 IKSDLKRVIVGLRNSA--NETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELE-IYDNINVDVI 418 (593)
T ss_pred hhccceeEEEecchhH--hhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhh-hccCcceeeE
Confidence 9999988877665532 45566666655 467899999999999899999999999999999999996 4589999999
Q ss_pred cCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchH
Q 008461 164 YGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 242 (564)
Q Consensus 164 Hg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~ 242 (564)
||..++.+|.+++++|+. +..|||||++++||+|| .+|++|||||+|.+...|+||+|||||+|+.|.+|+|++..+.
T Consensus 419 h~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf-~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 419 HGERSQKQRDETMERFRIGKIWVLICTDLLARGIDF-KGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred ecccchhHHHHHHHHHhccCeeEEEehhhhhccccc-cCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccc
Confidence 999999999999999999 99999999999999999 9999999999999999999999999999999999999999888
Q ss_pred HHHHHHHH
Q 008461 243 KMLEKLRE 250 (564)
Q Consensus 243 ~~l~~L~~ 250 (564)
++++.+.+
T Consensus 498 ~~ir~iae 505 (593)
T KOG0344|consen 498 PRIRSIAE 505 (593)
T ss_pred hhhhhHHH
Confidence 87776544
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.98 E-value=3e-31 Score=298.27 Aligned_cols=235 Identities=21% Similarity=0.340 Sum_probs=191.6
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCccc--HHHHHHHH---HHhCCCCCcEEEEeccCChhHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG--FKKALNAI---VSQLPKHRQTFLFSATQTKSVQDL 81 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~g--f~~~l~~I---l~~lp~~~Q~llfSATl~~~v~~l 81 (564)
+.++|+++||++|....... .+...++.+|||||||++++|| |+..+..+ ...+| ..+++++|||++..+...
T Consensus 102 ~~~~il~~tpe~l~~~~~~~-~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~ 179 (591)
T TIGR01389 102 GELKLLYVAPERLEQDYFLN-MLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP-QVPRIALTATADAETRQD 179 (591)
T ss_pred CCCCEEEEChhHhcChHHHH-HHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHH
Confidence 57899999999996433222 2345689999999999999988 66665544 45565 455999999999988765
Q ss_pred HHHhcC--CCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCC
Q 008461 82 ARLSLK--DPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIP 159 (564)
Q Consensus 82 ~~~~l~--~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~ 159 (564)
....+. ++..+.. ........|.+.....+...+..++..+.+.++||||+|++.|+.+++.|... |++
T Consensus 180 i~~~l~~~~~~~~~~-------~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~--g~~ 250 (591)
T TIGR01389 180 IRELLRLADANEFIT-------SFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ--GIS 250 (591)
T ss_pred HHHHcCCCCCCeEec-------CCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC--CCC
Confidence 444443 4432211 11112234444555677888999998887889999999999999999999874 899
Q ss_pred eeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeC
Q 008461 160 LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238 (564)
Q Consensus 160 v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~ 238 (564)
+..+||+|++.+|..+++.|.. ...|||||+++++|||+ |+|++||+|++|.+++.|+||+|||||.|..|.|++++.
T Consensus 251 ~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~-p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~ 329 (591)
T TIGR01389 251 ALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDK-PNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYS 329 (591)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcC-CCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecC
Confidence 9999999999999999999999 99999999999999999 999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHcCC
Q 008461 239 PTEMKMLEKLREAKI 253 (564)
Q Consensus 239 ~~e~~~l~~L~~~~i 253 (564)
+.+...++.+.....
T Consensus 330 ~~d~~~~~~~i~~~~ 344 (591)
T TIGR01389 330 PADIALLKRRIEQSE 344 (591)
T ss_pred HHHHHHHHHHHhccC
Confidence 999988888776543
No 41
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=3.2e-29 Score=298.17 Aligned_cols=266 Identities=17% Similarity=0.215 Sum_probs=185.6
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCccc----HHHHHHHHHHhCCCCCcEEEEeccCChhHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG----FKKALNAIVSQLPKHRQTFLFSATQTKSVQDLA 82 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~g----f~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~ 82 (564)
+.++|||+||++|..+|.+.....++++++|||||+|.|++.. +...+..|...++.+.|+|+||||+++. ..++
T Consensus 98 ~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~-eevA 176 (1490)
T PRK09751 98 NPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSA-SDVA 176 (1490)
T ss_pred CCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCH-HHHH
Confidence 5789999999999887765433458999999999999999764 3455666667778889999999999984 5666
Q ss_pred HHhcC-CCCcccccccccccCCccceeEEEEcCcccH----------------HHHHH-----HHHHH-cCCCcEEEEeC
Q 008461 83 RLSLK-DPQYLSVHEESVTATPNRLQQTAMIVPLEQK----------------LDMLW-----SFIKA-HLNSKILVFLT 139 (564)
Q Consensus 83 ~~~l~-~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~K----------------l~~L~-----~~L~~-~~~~k~IVF~~ 139 (564)
+.... +|..|. .... ..+..+. .++.+..... ...++ .++.. ....++|||||
T Consensus 177 ~~L~g~~pv~Iv-~~~~--~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvN 252 (1490)
T PRK09751 177 AFLGGDRPVTVV-NPPA--MRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTN 252 (1490)
T ss_pred HHhcCCCCEEEE-CCCC--CcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECC
Confidence 54433 344332 1111 1112222 1121111000 11111 12221 12578999999
Q ss_pred ChHHHHHHHHHHHhhCC-------------------------------CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEE
Q 008461 140 SCKQVKYVFEAFKKLRP-------------------------------GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLF 187 (564)
Q Consensus 140 t~k~v~~l~e~L~~l~~-------------------------------gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLV 187 (564)
|++.|+.++..|..... ...+..|||+|++.+|..+++.|++ ..+|||
T Consensus 253 SR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLV 332 (1490)
T PRK09751 253 SRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVV 332 (1490)
T ss_pred CHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEE
Confidence 99999999998876421 1225789999999999999999999 999999
Q ss_pred EecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccC-CCCceEEEEeCcchHH-HHHH---HHHc-CCCccccccc
Q 008461 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY-NSGGRSVLFLTPTEMK-MLEK---LREA-KIPIHFTKAN 261 (564)
Q Consensus 188 aTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~-g~~G~~il~l~~~e~~-~l~~---L~~~-~i~i~~~~~~ 261 (564)
||+++++|||| ++|++||||++|.++.+|+||+|||||. |..+.+++ .+.+.. .+.. ++.. .-.++.+.+.
T Consensus 333 ATssLELGIDI-g~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli--~p~~r~dlle~~~~ve~~l~g~iE~~~~p 409 (1490)
T PRK09751 333 ATSSLELGIDM-GAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLF--FPRTRRDLVDSAVIVECMFAGRLENLTPP 409 (1490)
T ss_pred eCcHHHccCCc-ccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEE--EeCcHHHHHhhHHHHHHHhcCCCCccCCC
Confidence 99999999999 8999999999999999999999999996 23344453 333332 3321 1111 4455666666
Q ss_pred cccchhHHHHHHHHHhcCh
Q 008461 262 TKRLQPVSGLLAALLVKYP 280 (564)
Q Consensus 262 ~~~~~~i~~~l~~~~~~~~ 280 (564)
...+..+.+++.+++...+
T Consensus 410 ~nplDVLaqqiva~a~~~~ 428 (1490)
T PRK09751 410 HNPLDVLAQQTVAAAAMDA 428 (1490)
T ss_pred CChHHHHHHHHHHHHhcCC
Confidence 6677777888888877643
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=7.2e-29 Score=289.04 Aligned_cols=266 Identities=17% Similarity=0.253 Sum_probs=180.6
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCC--CCCCcceEEEeccCccCcccHHHHHHHH----HHhCCCCCcEEEEeccCChhHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNF--DCSQLQILILDEADRILDVGFKKALNAI----VSQLPKHRQTFLFSATQTKSVQD 80 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~--~~~~L~~lVlDEAD~lld~gf~~~l~~I----l~~lp~~~Q~llfSATl~~~v~~ 80 (564)
..++|+||||++|..++... .+ .+.++++||+||||.+++..++..+..+ ....+...|++++|||+++. ..
T Consensus 145 ~~p~IlVtTPE~L~~ll~~~-~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~ 222 (876)
T PRK13767 145 KPPHILITTPESLAILLNSP-KFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EE 222 (876)
T ss_pred CCCCEEEecHHHHHHHhcCh-hHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HH
Confidence 47899999999997666433 33 3689999999999999987666554444 34444678999999999873 34
Q ss_pred HHHHhcCC-----CCcccccccccccCCccceeE-----EEEcCccc----HHHHHHHHHHHcCCCcEEEEeCChHHHHH
Q 008461 81 LARLSLKD-----PQYLSVHEESVTATPNRLQQT-----AMIVPLEQ----KLDMLWSFIKAHLNSKILVFLTSCKQVKY 146 (564)
Q Consensus 81 l~~~~l~~-----p~~i~v~~~~~~~~p~~l~q~-----~~~~~~~~----Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~ 146 (564)
++...... +..+.+..... ..+..+... ........ ....|..++.. +.++||||||+..|+.
T Consensus 223 va~~L~~~~~~~~~r~~~iv~~~~-~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~ 299 (876)
T PRK13767 223 VAKFLVGYEDDGEPRDCEIVDARF-VKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAER 299 (876)
T ss_pred HHHHhcCccccCCCCceEEEccCC-CccceEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHH
Confidence 44332221 11111111100 000001000 00111111 22334444433 5789999999999999
Q ss_pred HHHHHHhhCC----CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHh
Q 008461 147 VFEAFKKLRP----GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRV 221 (564)
Q Consensus 147 l~e~L~~l~~----gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRi 221 (564)
++..|....+ +..+..+||+|++.+|..+++.|++ ..+|||||+++++|||+ |+|++||||++|.++.+|+||+
T Consensus 300 la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDi-p~Vd~VI~~~~P~sv~~ylQRi 378 (876)
T PRK13767 300 VLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDI-GYIDLVVLLGSPKSVSRLLQRI 378 (876)
T ss_pred HHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCC-CCCcEEEEeCCCCCHHHHHHhc
Confidence 9999987543 4679999999999999999999999 99999999999999999 8999999999999999999999
Q ss_pred cccccCC-CCceEEEEeCcchH-H----HHHHHHHcCCCccccccccccchhHHHHHHHHHhcCh
Q 008461 222 GRTARYN-SGGRSVLFLTPTEM-K----MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYP 280 (564)
Q Consensus 222 GRtgR~g-~~G~~il~l~~~e~-~----~l~~L~~~~i~i~~~~~~~~~~~~i~~~l~~~~~~~~ 280 (564)
|||||.+ ..+.++++....+. - +++... .-.++.+......+..+.+++.+++...+
T Consensus 379 GRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~--~~~ie~~~~~~~~~dvl~q~i~~~~~~~~ 441 (876)
T PRK13767 379 GRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAR--EGKIDRVHIPKNPLDVLAQHIVGMAIERP 441 (876)
T ss_pred ccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHH--hCCCCCCCCCCCcHHHHHHHHHHHHHcCC
Confidence 9999874 44556666554332 1 122222 22344554455556667778887776643
No 43
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=7.3e-29 Score=284.81 Aligned_cols=224 Identities=20% Similarity=0.246 Sum_probs=178.9
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccC-ccCcccHHHH-HHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGFKKA-LNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD-~lld~gf~~~-l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
.+++|+|+|||+|++++.+. ..++++++||||||| +.++.+|.-. +..+...++++.|+++||||++... + ..
T Consensus 89 ~~t~I~v~T~G~Llr~l~~d--~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~--l-~~ 163 (819)
T TIGR01970 89 RRTRLEVVTEGILTRMIQDD--PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER--L-SS 163 (819)
T ss_pred CCCcEEEECCcHHHHHHhhC--cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH--H-HH
Confidence 46789999999999999875 457999999999999 6888776543 4566677888999999999999764 3 34
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCcccHH-----HHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhC-CCC
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKL-----DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGI 158 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl-----~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~-~gi 158 (564)
++.++..|.+... ...+.++|..++...++ ..+..++.. ..+.+||||+++..++.+++.|.... +++
T Consensus 164 ~l~~~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~ 237 (819)
T TIGR01970 164 LLPDAPVVESEGR-----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDV 237 (819)
T ss_pred HcCCCcEEEecCc-----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCc
Confidence 5555555543221 11256777766555443 234444443 36789999999999999999998632 578
Q ss_pred CeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC------------------CHhhHHH
Q 008461 159 PLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE------------------DVASYIH 219 (564)
Q Consensus 159 ~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~------------------s~~~Yiq 219 (564)
.++.+||+|++.+|..++..|++ ..+||||||++++|||| |+|++||+++.|. |.++|+|
T Consensus 238 ~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItI-p~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~Q 316 (819)
T TIGR01970 238 LICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTI-EGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQ 316 (819)
T ss_pred EEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccc-cCceEEEEcCcccccccccccCCceeeEEEECHHHHHh
Confidence 89999999999999999999999 89999999999999999 9999999999885 2346999
Q ss_pred HhcccccCCCCceEEEEeCcchHH
Q 008461 220 RVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 220 RiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
|+|||||. ..|.||.|++..+..
T Consensus 317 R~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 317 RAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred hhhhcCCC-CCCEEEEeCCHHHHH
Confidence 99999999 799999999986554
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=8.9e-29 Score=280.59 Aligned_cols=216 Identities=21% Similarity=0.287 Sum_probs=167.5
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCC---------------CCCCcceEEEeccCccCcccHHHHHHHHHHhC--CCC---Cc
Q 008461 7 NELNILVCTPGRLLQHMDETPNF---------------DCSQLQILILDEADRILDVGFKKALNAIVSQL--PKH---RQ 66 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~---------------~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l--p~~---~Q 66 (564)
.+++|||||+ +|+.+...+ .+.++++||||||| +++||...+..|+..+ ++. +|
T Consensus 134 ~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQ 207 (844)
T TIGR02621 134 HRPAVIVGTV----DMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLR 207 (844)
T ss_pred CCCcEEEECH----HHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccce
Confidence 4789999995 555544221 26889999999999 7899999999999975 443 69
Q ss_pred EEEEeccCChhHHHHHHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHH---HcCCCcEEEEeCChHH
Q 008461 67 TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK---AHLNSKILVFLTSCKQ 143 (564)
Q Consensus 67 ~llfSATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~---~~~~~k~IVF~~t~k~ 143 (564)
+++||||++..+..++..++.+|..+.+.... .+...+.+ |+.++...|+..+...+. ...++++||||||++.
T Consensus 208 tLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~--l~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~ 284 (844)
T TIGR02621 208 VVELTATSRTDGPDRTTLLSAEDYKHPVLKKR--LAAKKIVK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKH 284 (844)
T ss_pred EEEEecCCCccHHHHHHHHccCCceeeccccc--ccccceEE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHH
Confidence 99999999999988888888787766554322 23344455 344555555554443331 2346789999999999
Q ss_pred HHHHHHHHHhhCCCCCeeeccCCCCHHHHH-----HHHHHHhc----c--------CCeEEEecccccCCCcCCCCcEEE
Q 008461 144 VKYVFEAFKKLRPGIPLMCLYGRMKQDRRM-----AIYAQFCE----K--------RSVLFCTDVASRGLDFNKAVDWVV 206 (564)
Q Consensus 144 v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~-----~i~~~F~~----~--------~~VLVaTdv~arGLD~pp~V~~VI 206 (564)
|+.+++.|... ++ ..+||+|++.+|. .+++.|++ . ..|||||++++||||| +. ++||
T Consensus 285 Aq~L~~~L~~~--g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDI-d~-d~VI 358 (844)
T TIGR02621 285 VRKVFAKLPKE--KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNI-SA-DHLV 358 (844)
T ss_pred HHHHHHHHHhc--CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccC-Cc-ceEE
Confidence 99999999874 44 8999999999999 88999975 1 4699999999999999 74 8999
Q ss_pred EcCCCCCHhhHHHHhcccccCCCC-ceEEEEeCc
Q 008461 207 QVDCPEDVASYIHRVGRTARYNSG-GRSVLFLTP 239 (564)
Q Consensus 207 ~~d~P~s~~~YiqRiGRtgR~g~~-G~~il~l~~ 239 (564)
++.+| .++|+||+||+||.|+. |..+.++.+
T Consensus 359 ~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 359 CDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred ECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 98877 69999999999999985 444666644
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=4.1e-28 Score=281.39 Aligned_cols=216 Identities=16% Similarity=0.260 Sum_probs=170.9
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
+.++||||||. ++ . ..+.+.+|++|||||+|++ +......+..++.+.|+++||||+++....+.....
T Consensus 553 g~~dIVIGTp~-ll---~--~~v~f~~L~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~ 621 (926)
T TIGR00580 553 GKIDILIGTHK-LL---Q--KDVKFKDLGLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGI 621 (926)
T ss_pred CCceEEEchHH-Hh---h--CCCCcccCCEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcC
Confidence 46999999994 33 2 2467799999999999994 334556677788899999999998887776766666
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
.++..+...... . ..+.+++.......-...+...+. .+.+++||||++..++.+++.|..+.|++.+..+||+
T Consensus 622 ~d~s~I~~~p~~--R--~~V~t~v~~~~~~~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~ 695 (926)
T TIGR00580 622 RDLSIIATPPED--R--LPVRTFVMEYDPELVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQ 695 (926)
T ss_pred CCcEEEecCCCC--c--cceEEEEEecCHHHHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 777666543221 1 123333332222111222222222 3689999999999999999999998889999999999
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC-CHhhHHHHhcccccCCCCceEEEEeCcc
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGGRSVLFLTPT 240 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~-s~~~YiqRiGRtgR~g~~G~~il~l~~~ 240 (564)
|++.+|..++.+|++ +.+|||||+++++|||+ |+|++||++++|. +..+|+||+|||||.|+.|.|++++.+.
T Consensus 696 m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDI-p~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 696 MTENELEEVMLEFYKGEFQVLVCTTIIETGIDI-PNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECChhhccccc-ccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999999999 99999999999999999 9999999999975 7889999999999999999999998653
No 46
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.96 E-value=8.7e-28 Score=270.40 Aligned_cols=220 Identities=18% Similarity=0.227 Sum_probs=168.9
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhC-CCCCcEEEEeccCChhHHHHHHHh
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL-PKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l-p~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
...+|+|+||+.. ...+.++++|||||||.+..++ +.+..++..+ ++.+|+++||||++..+..+ ..+
T Consensus 273 k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~ 341 (675)
T PHA02653 273 KPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEF 341 (675)
T ss_pred CCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHH
Confidence 4678999998731 1246889999999999988876 4555666544 34469999999999888777 467
Q ss_pred cCCCCcccccccccccCCccceeEEEEcCc----------ccHHHHHHHHHHH---cCCCcEEEEeCChHHHHHHHHHHH
Q 008461 86 LKDPQYLSVHEESVTATPNRLQQTAMIVPL----------EQKLDMLWSFIKA---HLNSKILVFLTSCKQVKYVFEAFK 152 (564)
Q Consensus 86 l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~----------~~Kl~~L~~~L~~---~~~~k~IVF~~t~k~v~~l~e~L~ 152 (564)
+.+|..+.+.. .+...++++|+.... ..+. .+...+.. ..++++||||+++..++.+++.|.
T Consensus 342 ~~~p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~~~~k~-~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~ 416 (675)
T PHA02653 342 FPNPAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYIEEEKK-NIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLE 416 (675)
T ss_pred hcCCcEEEeCC----CcCCCeEEEEeecCcccccchhhhHHHHH-HHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHH
Confidence 78888776632 223446677764331 1122 22333332 224689999999999999999998
Q ss_pred hhCCCCCeeeccCCCCHHHHHHHHHHH-hc-cCCeEEEecccccCCCcCCCCcEEEEcC---CCC---------CHhhHH
Q 008461 153 KLRPGIPLMCLYGRMKQDRRMAIYAQF-CE-KRSVLFCTDVASRGLDFNKAVDWVVQVD---CPE---------DVASYI 218 (564)
Q Consensus 153 ~l~~gi~v~~lHg~m~~~~R~~i~~~F-~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d---~P~---------s~~~Yi 218 (564)
...+++.+..+||+|++. .+++++| ++ +.+||||||+++||||| |+|++||++| .|. |.++|+
T Consensus 417 ~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDI-p~V~~VID~G~~k~p~~~~g~~~~iSkasa~ 493 (675)
T PHA02653 417 KRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTI-RNATHVYDTGRVYVPEPFGGKEMFISKSMRT 493 (675)
T ss_pred hhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccc-cCeeEEEECCCccCCCcccCcccccCHHHHH
Confidence 765689999999999985 5677887 56 88999999999999999 9999999999 665 889999
Q ss_pred HHhcccccCCCCceEEEEeCcchHHHHH
Q 008461 219 HRVGRTARYNSGGRSVLFLTPTEMKMLE 246 (564)
Q Consensus 219 qRiGRtgR~g~~G~~il~l~~~e~~~l~ 246 (564)
||+|||||. +.|.|+.|+++.+...+.
T Consensus 494 QRaGRAGR~-~~G~c~rLyt~~~~~pI~ 520 (675)
T PHA02653 494 QRKGRVGRV-SPGTYVYFYDLDLLKPIK 520 (675)
T ss_pred HhccCcCCC-CCCeEEEEECHHHhHHHH
Confidence 999999999 799999999987654333
No 47
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.96 E-value=5.4e-28 Score=278.03 Aligned_cols=223 Identities=20% Similarity=0.285 Sum_probs=176.3
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCc-cCcccHH-HHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADR-ILDVGFK-KALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~-lld~gf~-~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
....|+|+|||+|++++... ..++++++|||||||. .++..+. ..+..++..++++.|+++||||++.. .+. .
T Consensus 92 ~~t~I~v~T~G~Llr~l~~d--~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~--~l~-~ 166 (812)
T PRK11664 92 PNTRLEVVTEGILTRMIQRD--PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND--RLQ-Q 166 (812)
T ss_pred CCCcEEEEChhHHHHHHhhC--CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH--HHH-H
Confidence 35689999999999998865 3579999999999995 5665432 23456677788899999999999875 233 4
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCcccHHH-----HHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhh-CCCC
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD-----MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKL-RPGI 158 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~-----~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l-~~gi 158 (564)
++.++..+.+... ...+.++|+.++...++. .+..++.. ..+.+||||++...++.+++.|... ..++
T Consensus 167 ~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~ 240 (812)
T PRK11664 167 LLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDV 240 (812)
T ss_pred hcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCc
Confidence 4555555543221 112677777666555553 34444443 3689999999999999999999863 2478
Q ss_pred CeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC------------------CHhhHHH
Q 008461 159 PLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE------------------DVASYIH 219 (564)
Q Consensus 159 ~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~------------------s~~~Yiq 219 (564)
.+..+||+|++.+|..++..|++ ..+||||||++++|||| |+|++||+++.|. |.++|+|
T Consensus 241 ~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtI-p~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~Q 319 (812)
T PRK11664 241 LLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTI-EGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQ 319 (812)
T ss_pred eEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccc-cCceEEEECCCcccccccccCCcceeEEEeechhhhhh
Confidence 89999999999999999999999 89999999999999999 9999999988764 3468999
Q ss_pred HhcccccCCCCceEEEEeCcchH
Q 008461 220 RVGRTARYNSGGRSVLFLTPTEM 242 (564)
Q Consensus 220 RiGRtgR~g~~G~~il~l~~~e~ 242 (564)
|+|||||. ..|.||.+++..+.
T Consensus 320 R~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 320 RAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred hccccCCC-CCcEEEEecCHHHH
Confidence 99999999 69999999997655
No 48
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=3.8e-28 Score=265.69 Aligned_cols=235 Identities=23% Similarity=0.354 Sum_probs=185.5
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCccc--HHHHHHHH---HHhCCCCCcEEEEeccCChhHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG--FKKALNAI---VSQLPKHRQTFLFSATQTKSVQDL 81 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~g--f~~~l~~I---l~~lp~~~Q~llfSATl~~~v~~l 81 (564)
+...||.-+|+||..--... .+.-..+.++||||||++++|| |++.+..+ ...+| +.+++.+|||.++.+..-
T Consensus 106 g~~klLyisPErl~~~~f~~-~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~D 183 (590)
T COG0514 106 GQLKLLYISPERLMSPRFLE-LLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDD 183 (590)
T ss_pred CceeEEEECchhhcChHHHH-HHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHH
Confidence 46899999999996321111 1224578899999999999998 88877665 45566 889999999999999884
Q ss_pred H--HHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHH---HcCCCcEEEEeCChHHHHHHHHHHHhhCC
Q 008461 82 A--RLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIK---AHLNSKILVFLTSCKQVKYVFEAFKKLRP 156 (564)
Q Consensus 82 ~--~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~---~~~~~k~IVF~~t~k~v~~l~e~L~~l~~ 156 (564)
+ .+.+..|..+..... ..++ +|-+++...-...+. +|. .+..+..||||.|++.|+.+++.|...
T Consensus 184 I~~~L~l~~~~~~~~sfd-----RpNi--~~~v~~~~~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~-- 253 (590)
T COG0514 184 IREQLGLQDANIFRGSFD-----RPNL--ALKVVEKGEPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN-- 253 (590)
T ss_pred HHHHhcCCCcceEEecCC-----Cchh--hhhhhhcccHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC--
Confidence 4 444555544322211 1222 222222222222222 554 455678999999999999999999985
Q ss_pred CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEE
Q 008461 157 GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 235 (564)
Q Consensus 157 gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il 235 (564)
|+.+..+||||+..+|..+.++|.. +..|+|||.++++|||- |+|+||||||+|.|++.|.|-+|||||.|....|++
T Consensus 254 g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdK-pdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 254 GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDK-PDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCC-CCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEE
Confidence 9999999999999999999999999 99999999999999999 999999999999999999999999999999999999
Q ss_pred EeCcchHHHHHHHHHcCCC
Q 008461 236 FLTPTEMKMLEKLREAKIP 254 (564)
Q Consensus 236 ~l~~~e~~~l~~L~~~~i~ 254 (564)
|+.|.+.....++.+..-+
T Consensus 333 l~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 333 LYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred eeccccHHHHHHHHHhhcc
Confidence 9999999888887765443
No 49
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.96 E-value=5.4e-28 Score=255.36 Aligned_cols=224 Identities=18% Similarity=0.221 Sum_probs=161.1
Q ss_pred CCcEEEEcHHHHHHHHhcCC-C--CCCC--CcceEEEeccCccCcccHHHHHHHHHHhCC-CCCcEEEEeccCChhHHHH
Q 008461 8 ELNILVCTPGRLLQHMDETP-N--FDCS--QLQILILDEADRILDVGFKKALNAIVSQLP-KHRQTFLFSATQTKSVQDL 81 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~-~--~~~~--~L~~lVlDEAD~lld~gf~~~l~~Il~~lp-~~~Q~llfSATl~~~v~~l 81 (564)
...|+|+||++++..+..+. . +.+. ..++|||||||+++++++.. +..++..++ .+.|+++||||+|..+..+
T Consensus 94 ~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i~~SATlp~~l~~~ 172 (358)
T TIGR01587 94 LDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPILLMSATLPKFLKEY 172 (358)
T ss_pred hCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEEEEecCchHHHHHH
Confidence 46799999999988776521 1 1111 23789999999999876554 666666554 4689999999999877766
Q ss_pred HHHhcCCCCcccccccccccCCccceeEEEEcC--cccHHHHHHHHHHHc-CCCcEEEEeCChHHHHHHHHHHHhhCCCC
Q 008461 82 ARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP--LEQKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGI 158 (564)
Q Consensus 82 ~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~--~~~Kl~~L~~~L~~~-~~~k~IVF~~t~k~v~~l~e~L~~l~~gi 158 (564)
+......+......... ......+.+..+. ...+...+..++... .+.++||||+|++.|+.++..|....+..
T Consensus 173 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~ 249 (358)
T TIGR01587 173 AEKIGYVEFNEPLDLKE---ERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEE 249 (358)
T ss_pred HhcCCCcccccCCCCcc---ccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCC
Confidence 65543322111111000 0011122322222 234556666666543 36899999999999999999998865556
Q ss_pred CeeeccCCCCHHHHHHH----HHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCC---
Q 008461 159 PLMCLYGRMKQDRRMAI----YAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG--- 230 (564)
Q Consensus 159 ~v~~lHg~m~~~~R~~i----~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~--- 230 (564)
.+..+||+|++.+|..+ ++.|++ ...|||||+++++|||+ | +++||++.+| +++|+||+||+||.|+.
T Consensus 250 ~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi-~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~ 325 (358)
T TIGR01587 250 EIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDI-S-ADVMITELAP--IDSLIQRLGRLHRYGRKNGE 325 (358)
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceecc-C-CCEEEEcCCC--HHHHHHHhccccCCCCCCCC
Confidence 79999999999999764 889999 88999999999999999 6 8999999877 78999999999999864
Q ss_pred -ceEEEEeCc
Q 008461 231 -GRSVLFLTP 239 (564)
Q Consensus 231 -G~~il~l~~ 239 (564)
|.++++...
T Consensus 326 ~~~~~v~~~~ 335 (358)
T TIGR01587 326 NFEVYIITIA 335 (358)
T ss_pred CCeEEEEeec
Confidence 356666543
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=2e-27 Score=280.93 Aligned_cols=214 Identities=15% Similarity=0.251 Sum_probs=170.0
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
+.++||||||+.+ . ..+.+.++++|||||+|++ |+. ...++..++.++|+++||||+++.+..++..++
T Consensus 702 g~~dIVVgTp~lL----~--~~v~~~~L~lLVIDEahrf---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl 770 (1147)
T PRK10689 702 GKIDILIGTHKLL----Q--SDVKWKDLGLLIVDEEHRF---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770 (1147)
T ss_pred CCCCEEEECHHHH----h--CCCCHhhCCEEEEechhhc---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhC
Confidence 5799999999743 2 2456789999999999996 433 245667788899999999999888888888888
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcc-cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLE-QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 165 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~-~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg 165 (564)
.++..+.+.... ...+.+.+...... .+...+..+. .+++++||||++..++.+++.|....|++.+.++||
T Consensus 771 ~d~~~I~~~p~~----r~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG 843 (1147)
T PRK10689 771 RDLSIIATPPAR----RLAVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG 843 (1147)
T ss_pred CCcEEEecCCCC----CCCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeC
Confidence 888777553321 11233333332221 1222223332 257899999999999999999999888999999999
Q ss_pred CCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCC-CCHhhHHHHhcccccCCCCceEEEEeCc
Q 008461 166 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCP-EDVASYIHRVGRTARYNSGGRSVLFLTP 239 (564)
Q Consensus 166 ~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P-~s~~~YiqRiGRtgR~g~~G~~il~l~~ 239 (564)
+|++.+|..++.+|++ +.+|||||++++||||+ |+|++||..+.. .+..+|+||+|||||.|+.|.|++++.+
T Consensus 844 ~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDI-P~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDI-PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECchhhccccc-ccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 9999999999999999 99999999999999999 999999965543 3667899999999999999999998854
No 51
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.7e-29 Score=244.13 Aligned_cols=206 Identities=27% Similarity=0.507 Sum_probs=178.2
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcc-cHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHh
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV-GFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~-gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
+.|+|+||||||++.+..+. .+++.+++.+||||+|.|+++ ..+..+..|.+..|...|++.||||+++.+.-..+.+
T Consensus 160 ~~PhivVgTPGrilALvr~k-~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kF 238 (387)
T KOG0329|consen 160 NCPHIVVGTPGRILALVRNR-SLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKF 238 (387)
T ss_pred CCCeEEEcCcHHHHHHHHhc-cCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhh
Confidence 47899999999999776665 899999999999999987754 4688999999999999999999999999999999999
Q ss_pred cCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccC
Q 008461 86 LKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 165 (564)
Q Consensus 86 l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg 165 (564)
+.+|..|.+.... ..+...++|+|+.....+|...|..+|....-.+++||+.|.....
T Consensus 239 mQdPmEi~vDdE~-KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~-------------------- 297 (387)
T KOG0329|consen 239 MQDPMEIFVDDEA-KLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRLS-------------------- 297 (387)
T ss_pred hcCchhhhccchh-hhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhhh--------------------
Confidence 9999999887664 4677899999999988888888888887766789999998765511
Q ss_pred CCCHHHHHHHHHHHhccCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH-H
Q 008461 166 RMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK-M 244 (564)
Q Consensus 166 ~m~~~~R~~i~~~F~~~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~-~ 244 (564)
| . .+ ||||++++||+|+ ..|+.|+|||+|.++++|+||+|||||.|..|.+|.|++..+.. .
T Consensus 298 -------------f-~-kr-~vat~lfgrgmdi-ervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~i 360 (387)
T KOG0329|consen 298 -------------F-Q-KR-LVATDLFGRGMDI-ERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKI 360 (387)
T ss_pred -------------h-h-hh-hHHhhhhccccCc-ccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHH
Confidence 2 1 12 8999999999999 99999999999999999999999999999999999999876554 6
Q ss_pred HHHHHHc
Q 008461 245 LEKLREA 251 (564)
Q Consensus 245 l~~L~~~ 251 (564)
|+.+...
T Consensus 361 Ln~vqdR 367 (387)
T KOG0329|consen 361 LNPVQDR 367 (387)
T ss_pred hchhhHh
Confidence 6666553
No 52
>PRK02362 ski2-like helicase; Provisional
Probab=99.95 E-value=5.2e-27 Score=270.02 Aligned_cols=229 Identities=18% Similarity=0.218 Sum_probs=167.7
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhC---CCCCcEEEEeccCChhHHHHH
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL---PKHRQTFLFSATQTKSVQDLA 82 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l---p~~~Q~llfSATl~~~v~~l~ 82 (564)
++.++|+||||+++..++.+.. ..++++++||+||||.+.+.+++..+..++..+ +++.|++++|||+++. .+++
T Consensus 111 l~~~~IiV~Tpek~~~llr~~~-~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la 188 (737)
T PRK02362 111 LGDNDIIVATSEKVDSLLRNGA-PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELA 188 (737)
T ss_pred cCCCCEEEECHHHHHHHHhcCh-hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHH
Confidence 4568999999999988777543 336899999999999999998998888776654 5689999999999874 4555
Q ss_pred HHhcCC-------CCcccccc--cccccCCccceeEEEEcCc-ccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHH
Q 008461 83 RLSLKD-------PQYLSVHE--ESVTATPNRLQQTAMIVPL-EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFK 152 (564)
Q Consensus 83 ~~~l~~-------p~~i~v~~--~~~~~~p~~l~q~~~~~~~-~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~ 152 (564)
.+.... |..+.... ......+. .+..+.++. ...+..+...+. .++++||||+|++.|+.++..|.
T Consensus 189 ~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~ 264 (737)
T PRK02362 189 DWLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAA 264 (737)
T ss_pred HHhCCCcccCCCCCCCCeeeEecCCeecccc--ccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHH
Confidence 443221 11110000 00000000 011111111 223334444443 36899999999999999988776
Q ss_pred hhCC----------------------------------CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCC
Q 008461 153 KLRP----------------------------------GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLD 197 (564)
Q Consensus 153 ~l~~----------------------------------gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD 197 (564)
.... ...+.++||+|++.+|..+++.|++ ...|||||+++++|||
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~Gvn 344 (737)
T PRK02362 265 SALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLN 344 (737)
T ss_pred HHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcC
Confidence 5321 1358899999999999999999999 9999999999999999
Q ss_pred cCCCCcEEEE----cC-----CCCCHhhHHHHhcccccCCCC--ceEEEEeCcch
Q 008461 198 FNKAVDWVVQ----VD-----CPEDVASYIHRVGRTARYNSG--GRSVLFLTPTE 241 (564)
Q Consensus 198 ~pp~V~~VI~----~d-----~P~s~~~YiqRiGRtgR~g~~--G~~il~l~~~e 241 (564)
+ |++++||+ || .|.++.+|+||+|||||.|.. |.+++++.+.+
T Consensus 345 l-Pa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 345 L-PARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred C-CceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 9 99999997 76 688999999999999999864 99999997753
No 53
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.95 E-value=2.5e-27 Score=269.87 Aligned_cols=271 Identities=18% Similarity=0.229 Sum_probs=184.3
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
+.++|+||||+++.. .+.+.+++++|+||+|++. ......+...+..+++++||||+.+....+.....
T Consensus 363 g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrfg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~ 431 (681)
T PRK10917 363 GEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRFG-----VEQRLALREKGENPHVLVMTATPIPRTLAMTAYGD 431 (681)
T ss_pred CCCCEEEchHHHhcc------cchhcccceEEEechhhhh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCC
Confidence 469999999998743 3456899999999999853 23334445556678999999998776544443322
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCC--------hHHHHHHHHHHHhhCC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTS--------CKQVKYVFEAFKKLRP 156 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t--------~k~v~~l~e~L~~l~~ 156 (564)
.++..+.. .. .....+...++.. .+...++.++... .+.+++|||++ +..+..+++.|....+
T Consensus 432 ~~~s~i~~--~p--~~r~~i~~~~~~~---~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~ 504 (681)
T PRK10917 432 LDVSVIDE--LP--PGRKPITTVVIPD---SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP 504 (681)
T ss_pred CceEEEec--CC--CCCCCcEEEEeCc---ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCC
Confidence 22222211 11 1111233333222 2233444444332 36799999984 5567788899888777
Q ss_pred CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC-CHhhHHHHhcccccCCCCceEE
Q 008461 157 GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGGRSV 234 (564)
Q Consensus 157 gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~-s~~~YiqRiGRtgR~g~~G~~i 234 (564)
++.+..+||+|++.+|..++++|++ +..|||||+++++|||+ |++++||++++|. ....|.||+||+||.|..|.|+
T Consensus 505 ~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDi-p~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 505 ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDV-PNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCccc-CCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEE
Confidence 7899999999999999999999999 99999999999999999 9999999999997 6788999999999999999999
Q ss_pred EEeC-c---chHHHHHHHHHc--CCCccccccccccchhHHH----HH----HHHHhcChhHHHHHHHHHHHHHHH
Q 008461 235 LFLT-P---TEMKMLEKLREA--KIPIHFTKANTKRLQPVSG----LL----AALLVKYPDMQHRAQKAFITYLRS 296 (564)
Q Consensus 235 l~l~-~---~e~~~l~~L~~~--~i~i~~~~~~~~~~~~i~~----~l----~~~~~~~~~l~~~a~~af~sy~rs 296 (564)
+++. + .....++.+.+. +..|.+..+....--.+.. -+ -.-+..|.++.+.|+.+...++..
T Consensus 584 ll~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~rg~g~~~g~~q~g~~~~~~~~~~~d~~l~~~a~~~a~~~~~~ 659 (681)
T PRK10917 584 LLYKDPLSETARERLKIMRETNDGFVIAEKDLELRGPGELLGTRQSGLPEFKVADLVRDEELLEEARKDARELLER 659 (681)
T ss_pred EEECCCCChhHHHHHHHHHHhcchHHHHHHhHhhCCCccccCceecCCCCeeEeeHhhhHHHHHHHHHHHHHHHHh
Confidence 9995 4 233356666653 4444333332110000000 00 011234667777777777766664
No 54
>PRK00254 ski2-like helicase; Provisional
Probab=99.95 E-value=2e-26 Score=264.49 Aligned_cols=236 Identities=17% Similarity=0.185 Sum_probs=171.5
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHh
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
++.++|+|+||+++..++.+. ...++++++||+||+|.+.+.+++..+..++..++...|++++|||+++ ..+++.+.
T Consensus 112 ~~~~~IiV~Tpe~~~~ll~~~-~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl 189 (720)
T PRK00254 112 LGKYDIIIATAEKFDSLLRHG-SSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWL 189 (720)
T ss_pred hccCCEEEEcHHHHHHHHhCC-chhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHh
Confidence 457899999999998777654 3347899999999999999999999999999999999999999999987 46666643
Q ss_pred cCCCCcccccccccccCCccceeEEEEcCcc-------cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhC---
Q 008461 86 LKDPQYLSVHEESVTATPNRLQQTAMIVPLE-------QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR--- 155 (564)
Q Consensus 86 l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~-------~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~--- 155 (564)
.. +.+.. .............+.+...+.. .....+...+.. +.++||||+|++.|+.++..+....
T Consensus 190 ~~-~~~~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~vLVF~~sr~~~~~~a~~l~~~~~~~ 265 (720)
T PRK00254 190 NA-ELVVS-DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKK--GKGALVFVNTRRSAEKEALELAKKIKRF 265 (720)
T ss_pred CC-ccccC-CCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHh--CCCEEEEEcChHHHHHHHHHHHHHHHHh
Confidence 32 21111 0000000000011111111111 112334444443 6899999999999988776664310
Q ss_pred ----------------------------CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEE
Q 008461 156 ----------------------------PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVV 206 (564)
Q Consensus 156 ----------------------------~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI 206 (564)
-...+.++||+|++.+|..+++.|++ ..+|||||+++++|||+ |++++||
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvni-pa~~vVI 344 (720)
T PRK00254 266 LTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINL-PAFRVII 344 (720)
T ss_pred cCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCC-CceEEEE
Confidence 01358899999999999999999999 99999999999999999 8999999
Q ss_pred E-------cCCCC-CHhhHHHHhcccccCC--CCceEEEEeCcch-HHHHHHH
Q 008461 207 Q-------VDCPE-DVASYIHRVGRTARYN--SGGRSVLFLTPTE-MKMLEKL 248 (564)
Q Consensus 207 ~-------~d~P~-s~~~YiqRiGRtgR~g--~~G~~il~l~~~e-~~~l~~L 248 (564)
. ++.|. +...|+||+|||||.| ..|.+++++.+.+ ..+++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~ 397 (720)
T PRK00254 345 RDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERY 397 (720)
T ss_pred CCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHH
Confidence 4 55554 5779999999999975 6799999998765 2345444
No 55
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.95 E-value=1.4e-26 Score=271.62 Aligned_cols=223 Identities=20% Similarity=0.342 Sum_probs=168.8
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccC-ccCcccHHHH-HHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGFKKA-LNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD-~lld~gf~~~-l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
.+++|+|||||+|++++...+ .++++++||||||| ++++++|... +..++... ++.|+++||||++. ..+.+.
T Consensus 162 ~~t~I~v~TpG~LL~~l~~d~--~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~--e~fs~~ 236 (1294)
T PRK11131 162 DNTMVKLMTDGILLAEIQQDR--LLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR-PDLKVIITSATIDP--ERFSRH 236 (1294)
T ss_pred CCCCEEEEChHHHHHHHhcCC--ccccCcEEEecCccccccccchHHHHHHHhhhcC-CCceEEEeeCCCCH--HHHHHH
Confidence 468999999999999998654 37999999999999 7999988753 44444332 36899999999974 466766
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCcc------cHHHHHHHHHH---HcCCCcEEEEeCChHHHHHHHHHHHhhC
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLE------QKLDMLWSFIK---AHLNSKILVFLTSCKQVKYVFEAFKKLR 155 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~------~Kl~~L~~~L~---~~~~~k~IVF~~t~k~v~~l~e~L~~l~ 155 (564)
+...| .+.+.... . .+.++|..+... ..+..+...+. ....+.+||||++...++.+++.|....
T Consensus 237 F~~ap-vI~V~Gr~---~--pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~ 310 (1294)
T PRK11131 237 FNNAP-IIEVSGRT---Y--PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLN 310 (1294)
T ss_pred cCCCC-EEEEcCcc---c--cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcC
Confidence 66555 34443211 1 245666655322 22333333322 2346789999999999999999998752
Q ss_pred -CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecccccCCCcCCCCcEEEEcC---------------CC---CCHhh
Q 008461 156 -PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVD---------------CP---EDVAS 216 (564)
Q Consensus 156 -~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~arGLD~pp~V~~VI~~d---------------~P---~s~~~ 216 (564)
+.+.+..+||+|++.+|..++..+ ...+||||||++++|||| |+|++||+++ +| .|.++
T Consensus 311 ~~~~~VlpLhg~Ls~~eQ~~Vf~~~-g~rkIIVATNIAEtSITI-pgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkas 388 (1294)
T PRK11131 311 LRHTEILPLYARLSNSEQNRVFQSH-SGRRIVLATNVAETSLTV-PGIKYVIDPGTARISRYSYRTKVQRLPIEPISQAS 388 (1294)
T ss_pred CCcceEeecccCCCHHHHHHHhccc-CCeeEEEeccHHhhcccc-CcceEEEECCCccccccccccCcccCCeeecCHhh
Confidence 234578999999999999998752 267899999999999999 9999999986 33 46689
Q ss_pred HHHHhcccccCCCCceEEEEeCcchHH
Q 008461 217 YIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 217 YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
|+||+|||||. ..|.||.++++.+..
T Consensus 389 a~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 389 ANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred HhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 99999999999 689999999976543
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.94 E-value=5.2e-26 Score=257.27 Aligned_cols=214 Identities=19% Similarity=0.267 Sum_probs=156.4
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCC--CCCcEEEEeccCChhHHHHHH
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP--KHRQTFLFSATQTKSVQDLAR 83 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp--~~~Q~llfSATl~~~v~~l~~ 83 (564)
.+.++|+||||+++.+ .+.+.+++++|+||+|++... ....+....+ ...|+++||||+.+....+..
T Consensus 336 ~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~ 405 (630)
T TIGR00643 336 SGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFGVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTV 405 (630)
T ss_pred CCCCCEEEecHHHHhc------cccccccceEEEechhhccHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh
Confidence 3568999999998753 356789999999999996432 1122333332 268999999997665433332
Q ss_pred HhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCCh--------HHHHHHHHHHHh
Q 008461 84 LSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSC--------KQVKYVFEAFKK 153 (564)
Q Consensus 84 ~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~--------k~v~~l~e~L~~ 153 (564)
...-+...+... ......+...++ .... ...++..+... .+.+++|||+++ ..++.+++.|..
T Consensus 406 ~~~l~~~~i~~~----p~~r~~i~~~~~--~~~~-~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~ 478 (630)
T TIGR00643 406 YGDLDTSIIDEL----PPGRKPITTVLI--KHDE-KDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKK 478 (630)
T ss_pred cCCcceeeeccC----CCCCCceEEEEe--Ccch-HHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHh
Confidence 211111111110 000112222222 2222 25566666543 367999999875 567788888887
Q ss_pred hCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC-CHhhHHHHhcccccCCCCc
Q 008461 154 LRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGG 231 (564)
Q Consensus 154 l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~-s~~~YiqRiGRtgR~g~~G 231 (564)
..+++.+..+||+|++.+|..+++.|++ +..|||||+++++|||+ |++++||++++|. +...|.||+||+||.|..|
T Consensus 479 ~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDi-P~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g 557 (630)
T TIGR00643 479 AFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDV-PNATVMVIEDAERFGLSQLHQLRGRVGRGDHQS 557 (630)
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCccc-CCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCc
Confidence 6688999999999999999999999999 99999999999999999 9999999999996 6889999999999999999
Q ss_pred eEEEEe
Q 008461 232 RSVLFL 237 (564)
Q Consensus 232 ~~il~l 237 (564)
.|++++
T Consensus 558 ~~il~~ 563 (630)
T TIGR00643 558 YCLLVY 563 (630)
T ss_pred EEEEEE
Confidence 999999
No 57
>PRK01172 ski2-like helicase; Provisional
Probab=99.94 E-value=1.2e-25 Score=256.69 Aligned_cols=242 Identities=17% Similarity=0.221 Sum_probs=168.9
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHh---CCCCCcEEEEeccCChhHHHHH
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ---LPKHRQTFLFSATQTKSVQDLA 82 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~---lp~~~Q~llfSATl~~~v~~l~ 82 (564)
+..++|+|+||+++..++.+.+ ..++++++||+||||++.+.+++..+..++.. +++..|++++|||+++. .+++
T Consensus 109 ~~~~dIiv~Tpek~~~l~~~~~-~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la 186 (674)
T PRK01172 109 IKRYDVVILTSEKADSLIHHDP-YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELA 186 (674)
T ss_pred hccCCEEEECHHHHHHHHhCCh-hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHH
Confidence 3578999999999987776543 34789999999999999998888887777654 45688999999999874 5666
Q ss_pred HHhcCCCCcccccccccccCCccceeEE---EEcC-cccHHHHHHHHHHH--cCCCcEEEEeCChHHHHHHHHHHHhhCC
Q 008461 83 RLSLKDPQYLSVHEESVTATPNRLQQTA---MIVP-LEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRP 156 (564)
Q Consensus 83 ~~~l~~p~~i~v~~~~~~~~p~~l~q~~---~~~~-~~~Kl~~L~~~L~~--~~~~k~IVF~~t~k~v~~l~e~L~~l~~ 156 (564)
.+..... +... ....|......+ ..+. .......+..++.. ..++++||||+|++.++.++..|....+
T Consensus 187 ~wl~~~~--~~~~---~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~ 261 (674)
T PRK01172 187 QWLNASL--IKSN---FRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFP 261 (674)
T ss_pred HHhCCCc--cCCC---CCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhh
Confidence 5432221 1110 001111110000 0111 11111123333433 2368999999999999999988876422
Q ss_pred C-----------------------CCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCC--
Q 008461 157 G-----------------------IPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC-- 210 (564)
Q Consensus 157 g-----------------------i~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~-- 210 (564)
. ..+.++||+|++.+|..+++.|++ ..+|||||+++++|||+ |+. .||+++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvni-pa~-~VII~~~~~ 339 (674)
T PRK01172 262 EFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNL-PAR-LVIVRDITR 339 (674)
T ss_pred hcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCC-cce-EEEEcCceE
Confidence 1 247889999999999999999999 99999999999999999 864 6666554
Q ss_pred -------CCCHhhHHHHhcccccCCC--CceEEEEeCcch-HHHHHHHH-HcCCCcc
Q 008461 211 -------PEDVASYIHRVGRTARYNS--GGRSVLFLTPTE-MKMLEKLR-EAKIPIH 256 (564)
Q Consensus 211 -------P~s~~~YiqRiGRtgR~g~--~G~~il~l~~~e-~~~l~~L~-~~~i~i~ 256 (564)
|.++.+|.||+|||||.|. .|.+++++...+ ...++++. ....|++
T Consensus 340 ~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~ 396 (674)
T PRK01172 340 YGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVI 396 (674)
T ss_pred eCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCcee
Confidence 4588899999999999984 688888877654 34444443 3344443
No 58
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.93 E-value=2.7e-26 Score=236.45 Aligned_cols=232 Identities=26% Similarity=0.433 Sum_probs=183.8
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCC------CCcEEEEeccCCh-hH
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK------HRQTFLFSATQTK-SV 78 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~------~~Q~llfSATl~~-~v 78 (564)
..+.+|+|+|||||++.+..+ .+.+.+..++|+||||.++..|+.+.+..+...+|. ..|.+++|||+.. .|
T Consensus 337 ~~g~~ivvGtpgRl~~~is~g-~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feV 415 (725)
T KOG0349|consen 337 KDGTHIVVGTPGRLLQPISKG-LVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEV 415 (725)
T ss_pred hcCceeeecCchhhhhhhhcc-ceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEe
Confidence 358999999999999988765 677899999999999999999999888888887764 4699999999763 34
Q ss_pred HHHHHHhcCCCCcccccccccccCCccceeEEEEcCcc--c--------------------------------HH-----
Q 008461 79 QDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE--Q--------------------------------KL----- 119 (564)
Q Consensus 79 ~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~--~--------------------------------Kl----- 119 (564)
..+....+.-|..|.+.-. ...|..+.+....+.+. . ..
T Consensus 416 kk~~ervmhfptwVdLkge--D~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkg 493 (725)
T KOG0349|consen 416 KKVGERVMHFPTWVDLKGE--DLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKG 493 (725)
T ss_pred eehhhhhccCceeEecccc--cccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcC
Confidence 4456666667776655322 23344443333322110 0 00
Q ss_pred HHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhC-CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCC
Q 008461 120 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLD 197 (564)
Q Consensus 120 ~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~-~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD 197 (564)
..-...++.+.-.++||||.|+..|+.|...|.+.. ..+++.++||+..+.+|.+.++.|+. ..+.|||||+++||||
T Consensus 494 Ey~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargld 573 (725)
T KOG0349|consen 494 EYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLD 573 (725)
T ss_pred chhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhcccc
Confidence 111223445556789999999999999999998753 24789999999999999999999999 9999999999999999
Q ss_pred cCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcch
Q 008461 198 FNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241 (564)
Q Consensus 198 ~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e 241 (564)
| .++.++||+.+|.+...|+||+||+||+.+-|.+|.++...-
T Consensus 574 i-~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ 616 (725)
T KOG0349|consen 574 I-TGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVP 616 (725)
T ss_pred c-cCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccc
Confidence 9 899999999999999999999999999999999999886543
No 59
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.93 E-value=1.1e-24 Score=256.37 Aligned_cols=222 Identities=20% Similarity=0.329 Sum_probs=169.8
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccC-ccCcccHHHH-HHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGFKKA-LNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD-~lld~gf~~~-l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
.++.|+|+|||+|++++...+. ++++++||||||| +.++.+|.-. +..++...| +.|+|+||||++. ..+++.
T Consensus 155 ~~T~I~~~TdGiLLr~l~~d~~--L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rp-dLKlIlmSATld~--~~fa~~ 229 (1283)
T TIGR01967 155 SNTLVKLMTDGILLAETQQDRF--LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRP-DLKIIITSATIDP--ERFSRH 229 (1283)
T ss_pred CCceeeeccccHHHHHhhhCcc--cccCcEEEEcCcchhhccchhHHHHHHHHHhhCC-CCeEEEEeCCcCH--HHHHHH
Confidence 4678999999999999987653 6899999999999 7999988764 666665554 7899999999974 567777
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCc------ccHHHHHHHHHHH---cCCCcEEEEeCChHHHHHHHHHHHhhC
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPL------EQKLDMLWSFIKA---HLNSKILVFLTSCKQVKYVFEAFKKLR 155 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~------~~Kl~~L~~~L~~---~~~~k~IVF~~t~k~v~~l~e~L~~l~ 155 (564)
+...|. |.+... ..| +...|..... ..+...+...+.. ...+.+|||+++...++.+++.|....
T Consensus 230 F~~apv-I~V~Gr---~~P--Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~ 303 (1283)
T TIGR01967 230 FNNAPI-IEVSGR---TYP--VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRN 303 (1283)
T ss_pred hcCCCE-EEECCC---ccc--ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcC
Confidence 655553 333221 112 3344543321 1233444444432 246899999999999999999998753
Q ss_pred -CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecccccCCCcCCCCcEEEEcCCC------------------CCHhh
Q 008461 156 -PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCP------------------EDVAS 216 (564)
Q Consensus 156 -~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~arGLD~pp~V~~VI~~d~P------------------~s~~~ 216 (564)
+++.++.+||+|++.+|..++..+. ..+||||||++++|||| |+|++||+++++ .|.++
T Consensus 304 ~~~~~VlpLhg~Ls~~eQ~~vf~~~~-~rkIVLATNIAEtSLTI-pgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkas 381 (1283)
T TIGR01967 304 LRHTEILPLYARLSNKEQQRVFQPHS-GRRIVLATNVAETSLTV-PGIHYVIDTGTARISRYSYRTKVQRLPIEPISQAS 381 (1283)
T ss_pred CCCcEEEeccCCCCHHHHHHHhCCCC-CceEEEeccHHHhcccc-CCeeEEEeCCCccccccccccCccccCCccCCHHH
Confidence 3567899999999999999854431 46899999999999999 999999999854 36689
Q ss_pred HHHHhcccccCCCCceEEEEeCcchH
Q 008461 217 YIHRVGRTARYNSGGRSVLFLTPTEM 242 (564)
Q Consensus 217 YiqRiGRtgR~g~~G~~il~l~~~e~ 242 (564)
|+||+|||||.| .|.||.+++..+.
T Consensus 382 a~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 382 ANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred HHHHhhhhCCCC-CceEEEecCHHHH
Confidence 999999999998 9999999987654
No 60
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=3.8e-25 Score=262.16 Aligned_cols=201 Identities=17% Similarity=0.245 Sum_probs=164.0
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCc-----------ccHH-HHHHHHHHhCCC-----------
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-----------VGFK-KALNAIVSQLPK----------- 63 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld-----------~gf~-~~l~~Il~~lp~----------- 63 (564)
+.++|+|||||+|.+++. .+...++++||+||||++++ +||. ..+..++..+|.
T Consensus 178 ~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i 254 (1176)
T PRK09401 178 GDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKI 254 (1176)
T ss_pred CCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHH
Confidence 469999999999999887 35556799999999999996 7885 678888888765
Q ss_pred -------------CCcEEEEeccCChh-HHHHHHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc
Q 008461 64 -------------HRQTFLFSATQTKS-VQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129 (564)
Q Consensus 64 -------------~~Q~llfSATl~~~-v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~ 129 (564)
.+|+++||||+++. +.. ..+.++..+.+... ..+..++.|.|+.++ .+...|..+++..
T Consensus 255 ~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~--~~~~rnI~~~yi~~~--~k~~~L~~ll~~l 327 (1176)
T PRK09401 255 RELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSP--VFYLRNIVDSYIVDE--DSVEKLVELVKRL 327 (1176)
T ss_pred HHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCc--ccccCCceEEEEEcc--cHHHHHHHHHHhc
Confidence 68999999999874 432 12233333333322 335567888888776 6778888888765
Q ss_pred CCCcEEEEeCChHH---HHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEE----ecccccCCCcCCC
Q 008461 130 LNSKILVFLTSCKQ---VKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC----TDVASRGLDFNKA 201 (564)
Q Consensus 130 ~~~k~IVF~~t~k~---v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVa----Tdv~arGLD~pp~ 201 (564)
+.++||||+|+.. |+.+++.|... |+++..+||+| ...+++|++ +.+|||| ||+++||||+ |+
T Consensus 328 -~~~~LIFv~t~~~~~~ae~l~~~L~~~--gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDi-P~ 398 (1176)
T PRK09401 328 -GDGGLIFVPSDKGKEYAEELAEYLEDL--GINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDL-PE 398 (1176)
T ss_pred -CCCEEEEEecccChHHHHHHHHHHHHC--CCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCC-Cc
Confidence 4689999999888 99999999885 99999999999 234599999 9999999 6999999999 88
Q ss_pred -CcEEEEcCCCC------CHhhHHHHhccccc
Q 008461 202 -VDWVVQVDCPE------DVASYIHRVGRTAR 226 (564)
Q Consensus 202 -V~~VI~~d~P~------s~~~YiqRiGRtgR 226 (564)
|++|||||+|. ..+.|.||+||+..
T Consensus 399 ~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 399 RIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred ceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 89999999998 78899999999963
No 61
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.92 E-value=5.9e-24 Score=240.35 Aligned_cols=260 Identities=18% Similarity=0.260 Sum_probs=195.1
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCC--CCCCcceEEEeccCccCcccHHHHHH----HHHHhCCCCCcEEEEeccCChhHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNF--DCSQLQILILDEADRILDVGFKKALN----AIVSQLPKHRQTFLFSATQTKSVQD 80 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~--~~~~L~~lVlDEAD~lld~gf~~~l~----~Il~~lp~~~Q~llfSATl~~~v~~ 80 (564)
+.|+|||+||+.|.-+|... .+ .+.+++++|+||.|.+.+...+.++. .+....+ ..|.+++|||+.+. ..
T Consensus 122 ~PPdILiTTPEsL~lll~~~-~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~ 198 (814)
T COG1201 122 NPPHILITTPESLAILLNSP-KFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG-DFQRIGLSATVGPP-EE 198 (814)
T ss_pred CCCcEEEeChhHHHHHhcCH-HHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HH
Confidence 58999999999996555442 33 37899999999999988765554444 4444445 89999999999964 45
Q ss_pred HHHHhcCC--CCcc-cccccccccCCccceeEEEEc---------CcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHH
Q 008461 81 LARLSLKD--PQYL-SVHEESVTATPNRLQQTAMIV---------PLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVF 148 (564)
Q Consensus 81 l~~~~l~~--p~~i-~v~~~~~~~~p~~l~q~~~~~---------~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~ 148 (564)
.++..... +..| .+... ...+...+.. .....+..++.++++| ..+|||+||+.+++.++
T Consensus 199 varfL~g~~~~~~Iv~~~~~------k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~ 270 (814)
T COG1201 199 VAKFLVGFGDPCEIVDVSAA------KKLEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIFTNTRSGAERLA 270 (814)
T ss_pred HHHHhcCCCCceEEEEcccC------CcceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEEEeChHHHHHHH
Confidence 55554443 3222 22111 1122222211 1123567778888887 49999999999999999
Q ss_pred HHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccc-c
Q 008461 149 EAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTA-R 226 (564)
Q Consensus 149 e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtg-R 226 (564)
..|.++. +..+..+||.++.+.|..+.++|++ ..+++|||+.++-|||+ .+|+.||||..|.++..++||+||+| |
T Consensus 271 ~~L~~~~-~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi-G~vdlVIq~~SP~sV~r~lQRiGRsgHr 348 (814)
T COG1201 271 FRLKKLG-PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI-GDIDLVIQLGSPKSVNRFLQRIGRAGHR 348 (814)
T ss_pred HHHHHhc-CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc-CCceEEEEeCCcHHHHHHhHhccccccc
Confidence 9999874 3889999999999999999999999 99999999999999999 89999999999999999999999999 4
Q ss_pred CCCCceEEEEeCcchHHHHHHHHHc----CCCccccccccccchhHHHHHHHHHhcCh
Q 008461 227 YNSGGRSVLFLTPTEMKMLEKLREA----KIPIHFTKANTKRLQPVSGLLAALLVKYP 280 (564)
Q Consensus 227 ~g~~G~~il~l~~~e~~~l~~L~~~----~i~i~~~~~~~~~~~~i~~~l~~~~~~~~ 280 (564)
.|...+++++.... .++++.+.-. .-.++.+.+....+..+.+++.+++...+
T Consensus 349 ~~~~Skg~ii~~~r-~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~ 405 (814)
T COG1201 349 LGEVSKGIIIAEDR-DDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKV 405 (814)
T ss_pred cCCcccEEEEecCH-HHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCc
Confidence 56667888887773 3344433221 33455677777778888888888887764
No 62
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.91 E-value=2.2e-23 Score=220.77 Aligned_cols=209 Identities=16% Similarity=0.149 Sum_probs=142.9
Q ss_pred CCCcEEEEcHHHHHHHHhcC---CCC----CCCCcceEEEeccCccCcccH-----HHHHHHHHHhCCCCCcEEEEeccC
Q 008461 7 NELNILVCTPGRLLQHMDET---PNF----DCSQLQILILDEADRILDVGF-----KKALNAIVSQLPKHRQTFLFSATQ 74 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~---~~~----~~~~L~~lVlDEAD~lld~gf-----~~~l~~Il~~lp~~~Q~llfSATl 74 (564)
..+.|+++||+.|..++... +.. -+.++++|||||+|.+..++. .-.+..++...+...+++++|||+
T Consensus 112 ~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~ 191 (357)
T TIGR03158 112 STPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATP 191 (357)
T ss_pred CCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCC
Confidence 46889999999986555431 111 147899999999999775432 223344445444467999999999
Q ss_pred ChhHHHHHHHh--cCCCCcccccc-----c-----------ccccCCccceeEEEEcCcccHHHHHHH---HH----HHc
Q 008461 75 TKSVQDLARLS--LKDPQYLSVHE-----E-----------SVTATPNRLQQTAMIVPLEQKLDMLWS---FI----KAH 129 (564)
Q Consensus 75 ~~~v~~l~~~~--l~~p~~i~v~~-----~-----------~~~~~p~~l~q~~~~~~~~~Kl~~L~~---~L----~~~ 129 (564)
++.+....... +..|..+.... . ........+.+.+.. ....+...+.. .+ +..
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~ 270 (357)
T TIGR03158 192 DPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQL 270 (357)
T ss_pred CHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhcc
Confidence 99877766543 33332221111 0 000011245555544 33333333322 22 223
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecccccCCCcCCCCcEEEEcC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVD 209 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~arGLD~pp~V~~VI~~d 209 (564)
.+.++||||||++.++.++..|+....++.+..+||.+++..|..+. +..|||||++++||||| |.+ +|| ++
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-----~~~iLVaTdv~~rGiDi-~~~-~vi-~~ 342 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-----QFDILLGTSTVDVGVDF-KRD-WLI-FS 342 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-----cCCEEEEecHHhcccCC-CCc-eEE-EC
Confidence 46799999999999999999998753456788999999999886432 68899999999999999 765 777 55
Q ss_pred CCCCHhhHHHHhcccc
Q 008461 210 CPEDVASYIHRVGRTA 225 (564)
Q Consensus 210 ~P~s~~~YiqRiGRtg 225 (564)
|.++++|+||+||||
T Consensus 343 -p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 -ARDAAAFWQRLGRLG 357 (357)
T ss_pred -CCCHHHHhhhcccCC
Confidence 899999999999997
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.91 E-value=2.1e-23 Score=230.34 Aligned_cols=219 Identities=15% Similarity=0.203 Sum_probs=154.5
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHH-Hhc
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLAR-LSL 86 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~-~~l 86 (564)
+.+|+|+||++|...... .+.++++||+||||++... .+..++..+++.+++++||||++........ ..+
T Consensus 201 ~~~I~VaT~qsl~~~~~~----~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~ 272 (501)
T PHA02558 201 DAPIVVSTWQSAVKQPKE----WFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDGKANILQYVGL 272 (501)
T ss_pred CCCEEEeeHHHHhhchhh----hccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEeccCCCccccHHHHHHh
Confidence 478999999999754321 3578999999999998754 4567777888788999999998754322111 111
Q ss_pred CCCCccccccccc----ccCCcccee----------------EE-----EEcCcccHHHHHHHHHHHc--CCCcEEEEeC
Q 008461 87 KDPQYLSVHEESV----TATPNRLQQ----------------TA-----MIVPLEQKLDMLWSFIKAH--LNSKILVFLT 139 (564)
Q Consensus 87 ~~p~~i~v~~~~~----~~~p~~l~q----------------~~-----~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~ 139 (564)
-.|....+..... ...+..+.. .| ..+....+...+...+... .+.++||||+
T Consensus 273 fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~ 352 (501)
T PHA02558 273 FGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFK 352 (501)
T ss_pred hCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 1122111110000 000000000 00 0112223333444443322 3578999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEe-cccccCCCcCCCCcEEEEcCCCCCHhhH
Q 008461 140 SCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT-DVASRGLDFNKAVDWVVQVDCPEDVASY 217 (564)
Q Consensus 140 t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaT-dv~arGLD~pp~V~~VI~~d~P~s~~~Y 217 (564)
+.++++.+++.|... |+++..+||+|++.+|..+++.|+. ...||||| +++++|+|+ |++++||++.+|.+...|
T Consensus 353 ~~~h~~~L~~~L~~~--g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Di-p~ld~vIl~~p~~s~~~~ 429 (501)
T PHA02558 353 YVEHGKPLYEMLKKV--YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISI-KNLHHVIFAHPSKSKIIV 429 (501)
T ss_pred EHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccc-ccccEEEEecCCcchhhh
Confidence 999999999999985 8899999999999999999999998 77899998 899999999 899999999999999999
Q ss_pred HHHhcccccCCCCceEEEEe
Q 008461 218 IHRVGRTARYNSGGRSVLFL 237 (564)
Q Consensus 218 iqRiGRtgR~g~~G~~il~l 237 (564)
+||+||++|.+..+...+++
T Consensus 430 ~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 430 LQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred hhhhhccccCCCCCceEEEE
Confidence 99999999998765444444
No 64
>PRK14701 reverse gyrase; Provisional
Probab=99.91 E-value=6.4e-24 Score=256.84 Aligned_cols=228 Identities=15% Similarity=0.198 Sum_probs=177.8
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCc-----------ccHHHHHHH----HHH------------
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-----------VGFKKALNA----IVS------------ 59 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld-----------~gf~~~l~~----Il~------------ 59 (564)
+.++|||+|||+|.+++... .. .++++||+||||+|++ +||...+.. |+.
T Consensus 177 g~~dILV~TPgrL~~~~~~l--~~-~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~ 253 (1638)
T PRK14701 177 GDFDILVTTAQFLARNFPEM--KH-LKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAME 253 (1638)
T ss_pred CCCCEEEECCchhHHhHHHH--hh-CCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhh
Confidence 46999999999999877643 22 6799999999999987 588877764 432
Q ss_pred ----------hCCCCCc-EEEEeccCChhHHHHHHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHH
Q 008461 60 ----------QLPKHRQ-TFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA 128 (564)
Q Consensus 60 ----------~lp~~~Q-~llfSATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~ 128 (564)
.+|+.+| +++||||++.... ... .++++..+.+... ..+..++.|.|+.+....+ ..|..+++.
T Consensus 254 ~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~~~-l~~~~l~f~v~~~--~~~lr~i~~~yi~~~~~~k-~~L~~ll~~ 328 (1638)
T PRK14701 254 KREILNKEIEKIGNKIGCLIVASATGKAKGD-RVK-LYRELLGFEVGSG--RSALRNIVDVYLNPEKIIK-EHVRELLKK 328 (1638)
T ss_pred hhhhhhhhhhhcCCCccEEEEEecCCCchhH-HHH-HhhcCeEEEecCC--CCCCCCcEEEEEECCHHHH-HHHHHHHHh
Confidence 3456666 6779999996421 222 2355555555433 3455678888887765555 578888877
Q ss_pred cCCCcEEEEeCChHHH---HHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEe----cccccCCCcCC
Q 008461 129 HLNSKILVFLTSCKQV---KYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT----DVASRGLDFNK 200 (564)
Q Consensus 129 ~~~~k~IVF~~t~k~v---~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaT----dv~arGLD~pp 200 (564)
. +..+||||+|++.+ +.+++.|... |+++..+||+ |..++++|++ +..||||| ++++||||+ |
T Consensus 329 ~-g~~gIVF~~t~~~~e~ae~la~~L~~~--Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDi-P 399 (1638)
T PRK14701 329 L-GKGGLIFVPIDEGAEKAEEIEKYLLED--GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDL-P 399 (1638)
T ss_pred C-CCCeEEEEeccccchHHHHHHHHHHHC--CCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCcc-C
Confidence 6 57899999998865 8899999885 9999999995 8899999999 99999999 599999999 8
Q ss_pred C-CcEEEEcCCCC---CHhhHHHHh-------------cccccCCCCceEEEEeCcchHHHHHHHHHc
Q 008461 201 A-VDWVVQVDCPE---DVASYIHRV-------------GRTARYNSGGRSVLFLTPTEMKMLEKLREA 251 (564)
Q Consensus 201 ~-V~~VI~~d~P~---s~~~YiqRi-------------GRtgR~g~~G~~il~l~~~e~~~l~~L~~~ 251 (564)
+ |++||+||+|. +++.|.|.. ||+||.|..+.+++...+.+..+++.+...
T Consensus 400 ~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 400 ERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhcc
Confidence 7 99999999999 888777766 999999988888876667776666665444
No 65
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.91 E-value=2.3e-23 Score=247.32 Aligned_cols=186 Identities=18% Similarity=0.307 Sum_probs=144.5
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCc-----------ccHHHH-HHHH-----------------
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-----------VGFKKA-LNAI----------------- 57 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld-----------~gf~~~-l~~I----------------- 57 (564)
++++|||||||+|.+++... .. +++++|+||||+|++ +||... +..|
T Consensus 177 ~~~dIlV~Tp~rL~~~~~~l---~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~ 252 (1171)
T TIGR01054 177 GDFDILITTTMFLSKNYDEL---GP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAK 252 (1171)
T ss_pred CCCCEEEECHHHHHHHHHHh---cC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHH
Confidence 46999999999999888753 22 899999999999998 788763 4444
Q ss_pred -----HHhCCCCCc--EEEEecc-CChhHHHHHHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc
Q 008461 58 -----VSQLPKHRQ--TFLFSAT-QTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH 129 (564)
Q Consensus 58 -----l~~lp~~~Q--~llfSAT-l~~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~ 129 (564)
++.+|+.+| +++|||| .|..+.. .+++++..+.+... ..+..++.+.|+.+.. +...|..+++..
T Consensus 253 ~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~--~~~~r~I~~~~~~~~~--~~~~L~~ll~~l 325 (1171)
T TIGR01054 253 KRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGG--SDTLRNVVDVYVEDED--LKETLLEIVKKL 325 (1171)
T ss_pred HHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCc--cccccceEEEEEeccc--HHHHHHHHHHHc
Confidence 334566666 5679999 5655432 23445544444332 3456678888876553 345677777665
Q ss_pred CCCcEEEEeCCh---HHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEE----ecccccCCCcCCC
Q 008461 130 LNSKILVFLTSC---KQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC----TDVASRGLDFNKA 201 (564)
Q Consensus 130 ~~~k~IVF~~t~---k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVa----Tdv~arGLD~pp~ 201 (564)
+.++||||+|+ +.|+.+++.|... |+++..+||+|++ .+++.|++ +..|||| ||+++||||+ |+
T Consensus 326 -~~~~IVFv~t~~~~~~a~~l~~~L~~~--g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDi-p~ 397 (1171)
T TIGR01054 326 -GTGGIVYVSIDYGKEKAEEIAEFLENH--GVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDL-PE 397 (1171)
T ss_pred -CCCEEEEEeccccHHHHHHHHHHHHhC--CceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCC-Cc
Confidence 57899999999 9999999999875 8999999999973 78999999 9999999 5999999999 88
Q ss_pred -CcEEEEcCCC
Q 008461 202 -VDWVVQVDCP 211 (564)
Q Consensus 202 -V~~VI~~d~P 211 (564)
|++|||||+|
T Consensus 398 ~V~~vI~~~~P 408 (1171)
T TIGR01054 398 RVRYAVFLGVP 408 (1171)
T ss_pred cccEEEEECCC
Confidence 8999999987
No 66
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2.8e-23 Score=235.77 Aligned_cols=129 Identities=22% Similarity=0.261 Sum_probs=113.6
Q ss_pred EEcCcccHHHHHHHHHHH--cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEE
Q 008461 111 MIVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFC 188 (564)
Q Consensus 111 ~~~~~~~Kl~~L~~~L~~--~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVa 188 (564)
+.+....|...|...+.. ..+.++||||+|+..++.++..|... |+++..+||++.+.++..+...+. ...|+||
T Consensus 406 i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~--gi~~~~L~~~~~~~e~~~i~~ag~-~g~VlIA 482 (790)
T PRK09200 406 VFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA--GIPHNLLNAKNAAKEAQIIAEAGQ-KGAVTVA 482 (790)
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--CCCEEEecCCccHHHHHHHHHcCC-CCeEEEE
Confidence 445667899999998865 35789999999999999999999985 999999999999888776665554 4579999
Q ss_pred ecccccCCCcC--CCCc-----EEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchH
Q 008461 189 TDVASRGLDFN--KAVD-----WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 242 (564)
Q Consensus 189 Tdv~arGLD~p--p~V~-----~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~ 242 (564)
||+++||+||+ |+|. +||+|++|.+...|+||+|||||.|.+|.+++|++..+.
T Consensus 483 TdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 483 TNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred ccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 99999999994 4898 999999999999999999999999999999999998654
No 67
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.89 E-value=1.3e-22 Score=228.50 Aligned_cols=129 Identities=20% Similarity=0.213 Sum_probs=112.0
Q ss_pred EEEcCcccHHHHHHHHHHH--cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEE
Q 008461 110 AMIVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLF 187 (564)
Q Consensus 110 ~~~~~~~~Kl~~L~~~L~~--~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLV 187 (564)
.+.+....|...+...+.. ..+.++||||+|+..++.++..|... |+++..+||++.+.+|..+...|+ ...|+|
T Consensus 401 ~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~--gi~~~~L~a~~~~~E~~ii~~ag~-~g~VlI 477 (762)
T TIGR03714 401 KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE--GIPHNLLNAQNAAKEAQIIAEAGQ-KGAVTV 477 (762)
T ss_pred eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC--CCCEEEecCCChHHHHHHHHHcCC-CCeEEE
Confidence 3455667899999998866 34789999999999999999999985 999999999999888766655443 457999
Q ss_pred EecccccCCCcCC---------CCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 188 CTDVASRGLDFNK---------AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 188 aTdv~arGLD~pp---------~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
|||+++||+|| | ++++|++|++|..... +||+|||||.|.+|.+++|++..+.-
T Consensus 478 ATdmAgRGtDI-~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 478 ATSMAGRGTDI-KLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred EccccccccCC-CCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhh
Confidence 99999999999 8 8999999999988777 99999999999999999999986553
No 68
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.89 E-value=4.3e-22 Score=230.88 Aligned_cols=160 Identities=19% Similarity=0.263 Sum_probs=128.3
Q ss_pred cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-c--CCeEEEecccc
Q 008461 117 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K--RSVLFCTDVAS 193 (564)
Q Consensus 117 ~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~--~~VLVaTdv~a 193 (564)
.|+..|..+|+.+.+.|+||||+++..+..+.+.|+.. .|+.+..+||+|++.+|..+++.|++ . ..|||||++++
T Consensus 479 ~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~-~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 479 PRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER-EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc-cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 46778889998888899999999999999999999643 48999999999999999999999997 4 78999999999
Q ss_pred cCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcc---hHHHHHHHHHcCCCcccccccc--ccchhH
Q 008461 194 RGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT---EMKMLEKLREAKIPIHFTKANT--KRLQPV 268 (564)
Q Consensus 194 rGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~---e~~~l~~L~~~~i~i~~~~~~~--~~~~~i 268 (564)
+|+|| +.+++||+||+|+++..|+||+||++|.|+.|.+.+++... -...+..+...++.+-...+.. ......
T Consensus 558 eGlNl-q~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~ 636 (956)
T PRK04914 558 EGRNF-QFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEF 636 (956)
T ss_pred cCCCc-ccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHH
Confidence 99999 99999999999999999999999999999998876666533 2335555556666554433332 223344
Q ss_pred HHHHHHHHhc
Q 008461 269 SGLLAALLVK 278 (564)
Q Consensus 269 ~~~l~~~~~~ 278 (564)
...+...+..
T Consensus 637 ~~~l~~~l~~ 646 (956)
T PRK04914 637 GDELIPYLAS 646 (956)
T ss_pred HHHHHHHHhC
Confidence 4455555543
No 69
>PRK13766 Hef nuclease; Provisional
Probab=99.89 E-value=6.5e-22 Score=229.30 Aligned_cols=122 Identities=30% Similarity=0.453 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHH----cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC--------CCHHHHHHHHHHHhc-cC
Q 008461 117 QKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR--------MKQDRRMAIYAQFCE-KR 183 (564)
Q Consensus 117 ~Kl~~L~~~L~~----~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~--------m~~~~R~~i~~~F~~-~~ 183 (564)
.|+..|..+|.. ..+.++||||+++.+|..+++.|.. .++.+..+||. |++.+|..++..|++ ..
T Consensus 347 pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~--~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~ 424 (773)
T PRK13766 347 PKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK--EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEF 424 (773)
T ss_pred hHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh--CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCC
Confidence 466666666655 4578999999999999999999976 48888888886 999999999999999 99
Q ss_pred CeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchH
Q 008461 184 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 242 (564)
Q Consensus 184 ~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~ 242 (564)
.|||||+++++|+|+ |.+++||+||+|+++..|+||+||+||.|. |.+++++.....
T Consensus 425 ~vLvaT~~~~eGldi-~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~ 481 (773)
T PRK13766 425 NVLVSTSVAEEGLDI-PSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTR 481 (773)
T ss_pred CEEEECChhhcCCCc-ccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCCh
Confidence 999999999999999 899999999999999999999999999865 888888876543
No 70
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=6e-22 Score=209.45 Aligned_cols=124 Identities=27% Similarity=0.339 Sum_probs=105.1
Q ss_pred HHHHHHHHHHH----cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeee-------ccCCCCHHHHHHHHHHHhc-cCCe
Q 008461 118 KLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC-------LYGRMKQDRRMAIYAQFCE-KRSV 185 (564)
Q Consensus 118 Kl~~L~~~L~~----~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~-------lHg~m~~~~R~~i~~~F~~-~~~V 185 (564)
|+..+..+++. +...++|||++.+.+++.+...|....+...+.+ ...||+|.+..++++.|++ .++|
T Consensus 349 Kl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nV 428 (542)
T COG1111 349 KLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNV 428 (542)
T ss_pred cHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceE
Confidence 44455555543 3467999999999999999999998754443111 2247999999999999999 9999
Q ss_pred EEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 186 LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 186 LVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
||||++++.|||+ |.||+||.|++-.|+..+|||.|||||. +.|.++++++.+..+
T Consensus 429 LVaTSVgEEGLDI-p~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrd 484 (542)
T COG1111 429 LVATSVGEEGLDI-PEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRD 484 (542)
T ss_pred EEEcccccccCCC-CcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchH
Confidence 9999999999999 9999999999999999999999999997 899999999987443
No 71
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.89 E-value=3.7e-22 Score=229.78 Aligned_cols=236 Identities=19% Similarity=0.279 Sum_probs=187.9
Q ss_pred CCcEEEEcHHHHHHHHhcC-CCCCCCC---cceEEEeccCccCccc--HHHHHHHH---HHhCCCCCcEEEEeccCChhH
Q 008461 8 ELNILVCTPGRLLQHMDET-PNFDCSQ---LQILILDEADRILDVG--FKKALNAI---VSQLPKHRQTFLFSATQTKSV 78 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~-~~~~~~~---L~~lVlDEAD~lld~g--f~~~l~~I---l~~lp~~~Q~llfSATl~~~v 78 (564)
.+.|+.-||+.+...-.-. ...++.. +.++|+||||++..|| |++.+..+ ....| ...++.+|||.+..|
T Consensus 356 ~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v 434 (941)
T KOG0351|consen 356 IIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP-GVPFIALTATATERV 434 (941)
T ss_pred eEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC-CCCeEEeehhccHHH
Confidence 6899999999885321100 1223344 7899999999999998 77776655 34444 489999999999998
Q ss_pred HH--HHHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHH-cCCCcEEEEeCChHHHHHHHHHHHhhC
Q 008461 79 QD--LARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA-HLNSKILVFLTSCKQVKYVFEAFKKLR 155 (564)
Q Consensus 79 ~~--l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~-~~~~k~IVF~~t~k~v~~l~e~L~~l~ 155 (564)
.. +..+.+.+|..+... ..+.++...+..-........+...++. +....+||||.+++.|+.+...|+..
T Consensus 435 ~~DIi~~L~l~~~~~~~~s-----fnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~- 508 (941)
T KOG0351|consen 435 REDVIRSLGLRNPELFKSS-----FNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL- 508 (941)
T ss_pred HHHHHHHhCCCCcceeccc-----CCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh-
Confidence 87 455667788744221 2234444333332223344444444444 45789999999999999999999986
Q ss_pred CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEE
Q 008461 156 PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSV 234 (564)
Q Consensus 156 ~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~i 234 (564)
|+.+..||+||+..+|..+...|.. +..|+|||=++++|||. |+|+.||+|.+|.+.+.|.|-+|||||.|....|+
T Consensus 509 -~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK-~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~ 586 (941)
T KOG0351|consen 509 -GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDK-PDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCV 586 (941)
T ss_pred -chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCC-CceeEEEECCCchhHHHHHHhccccCcCCCcceeE
Confidence 8999999999999999999999999 99999999999999999 99999999999999999999999999999999999
Q ss_pred EEeCcchHHHHHHHHHcC
Q 008461 235 LFLTPTEMKMLEKLREAK 252 (564)
Q Consensus 235 l~l~~~e~~~l~~L~~~~ 252 (564)
+|+...+...+..|...+
T Consensus 587 l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 587 LLYGYADISELRRLLTSG 604 (941)
T ss_pred EecchhHHHHHHHHHHcc
Confidence 999999988888887776
No 72
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1e-21 Score=218.86 Aligned_cols=200 Identities=15% Similarity=0.180 Sum_probs=157.7
Q ss_pred ceEEEeccC-ccCc-ccHHHHHHHHHHh---CC--CC----------------CcEEEEeccCChhHHHHHHHhcCCCCc
Q 008461 35 QILILDEAD-RILD-VGFKKALNAIVSQ---LP--KH----------------RQTFLFSATQTKSVQDLARLSLKDPQY 91 (564)
Q Consensus 35 ~~lVlDEAD-~lld-~gf~~~l~~Il~~---lp--~~----------------~Q~llfSATl~~~v~~l~~~~l~~p~~ 91 (564)
.++|+||.- +++. ..|..-+...++. ++ +. ..+.+||||.+.....+...+..++..
T Consensus 356 ~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~ 435 (656)
T PRK12898 356 KVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVR 435 (656)
T ss_pred eEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEE
Confidence 566788866 4432 3355555555543 21 11 255799999999888899999888877
Q ss_pred ccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCH
Q 008461 92 LSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 169 (564)
Q Consensus 92 i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~--~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~ 169 (564)
|.++.+.. ....+.++.++...|...|...+.... +.++||||+|+..++.++..|... |+++..|||++.
T Consensus 436 IPt~kp~~----r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~--gi~~~~Lhg~~~- 508 (656)
T PRK12898 436 IPTNRPSQ----RRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREA--GLPHQVLNAKQD- 508 (656)
T ss_pred eCCCCCcc----ceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--CCCEEEeeCCcH-
Confidence 65554331 123445667788889999999997643 678999999999999999999985 999999999865
Q ss_pred HHHHHHHHHHhc-cCCeEEEecccccCCCcCC---CCc-----EEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcc
Q 008461 170 DRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK---AVD-----WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240 (564)
Q Consensus 170 ~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp---~V~-----~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~ 240 (564)
.|...+..|.. ...|+||||+++||+|| + +|. +||+|++|.+...|+||+|||||.|..|.+++|++..
T Consensus 509 -~rE~~ii~~ag~~g~VlVATdmAgRGtDI-~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 509 -AEEAAIVARAGQRGRITVATNMAGRGTDI-KLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred -HHHHHHHHHcCCCCcEEEEccchhcccCc-CCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechh
Confidence 55566667777 77899999999999999 7 666 9999999999999999999999999999999999986
Q ss_pred hHH
Q 008461 241 EMK 243 (564)
Q Consensus 241 e~~ 243 (564)
|.-
T Consensus 587 D~l 589 (656)
T PRK12898 587 DDL 589 (656)
T ss_pred HHH
Confidence 643
No 73
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.88 E-value=3.8e-22 Score=212.11 Aligned_cols=219 Identities=18% Similarity=0.242 Sum_probs=174.8
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHH---HhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIV---SQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il---~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
..+|||||.+-+- ||.++. -.+.++.++||||+|.|-+...+.-+..++ .++.+..|++.+|||+.+. ..++..
T Consensus 315 dADIIVGTYEGiD-~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~ 391 (830)
T COG1202 315 DADIIVGTYEGID-YLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKK 391 (830)
T ss_pred CCcEEEeechhHH-HHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHH
Confidence 5799999999984 554442 567999999999999998866555555554 4455689999999999986 456655
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcC-cccHHHHHHHHHHHc--------CCCcEEEEeCChHHHHHHHHHHHhhC
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLWSFIKAH--------LNSKILVFLTSCKQVKYVFEAFKKLR 155 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~-~~~Kl~~L~~~L~~~--------~~~k~IVF~~t~k~v~~l~e~L~~l~ 155 (564)
..-++..+ ...|..+..+.+++. ..+|.+.+..+.+.. ..++||||++|++.|..++..|...
T Consensus 392 l~a~lV~y-------~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k- 463 (830)
T COG1202 392 LGAKLVLY-------DERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK- 463 (830)
T ss_pred hCCeeEee-------cCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC-
Confidence 54444322 123555677777776 667888777776532 1579999999999999999999874
Q ss_pred CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEc----CCCC-CHhhHHHHhcccccCCC
Q 008461 156 PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQV----DCPE-DVASYIHRVGRTARYNS 229 (564)
Q Consensus 156 ~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~----d~P~-s~~~YiqRiGRtgR~g~ 229 (564)
|+....+|+||+..+|..+...|.+ ...++|+|-+++.|+|| | .+-||.= +.-| ++..|.|++|||||.+.
T Consensus 464 -G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDF-P-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~y 540 (830)
T COG1202 464 -GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDF-P-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPDY 540 (830)
T ss_pred -CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCC-c-hHHHHHHHHHcccccCCHHHHHHHhcccCCCCc
Confidence 9999999999999999999999999 99999999999999999 7 4666652 2233 89999999999999874
Q ss_pred --CceEEEEeCcc
Q 008461 230 --GGRSVLFLTPT 240 (564)
Q Consensus 230 --~G~~il~l~~~ 240 (564)
.|++++++.|.
T Consensus 541 HdrGkVyllvepg 553 (830)
T COG1202 541 HDRGKVYLLVEPG 553 (830)
T ss_pred ccCceEEEEecCC
Confidence 69999999875
No 74
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.87 E-value=8.8e-22 Score=203.23 Aligned_cols=232 Identities=20% Similarity=0.274 Sum_probs=182.6
Q ss_pred CCcEEEEcHHHHH----HHHhcCCCCCCCCcceEEEeccCccCccc--HHHHHHHH---HHhCCCCCcEEEEeccCChhH
Q 008461 8 ELNILVCTPGRLL----QHMDETPNFDCSQLQILILDEADRILDVG--FKKALNAI---VSQLPKHRQTFLFSATQTKSV 78 (564)
Q Consensus 8 ~~~ILV~TPgrLl----~~L~~~~~~~~~~L~~lVlDEAD~lld~g--f~~~l~~I---l~~lp~~~Q~llfSATl~~~v 78 (564)
...||..||+.-. |-+.++ ..+-.-|.++|+||||++..|| |++++..+ .+.++ ....+.++||.+..|
T Consensus 113 ~~K~LYITPE~AAt~~FQ~lLn~-L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~V 190 (641)
T KOG0352|consen 113 TIKMLYITPEGAATDGFQKLLNG-LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKV 190 (641)
T ss_pred ceeEEEEchhhhhhhhHHHHHHH-HhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCC-CCceEEeecccChhH
Confidence 5678999998642 222222 1223568999999999999998 77665443 44444 788999999999999
Q ss_pred HH--HHHHhcCCCCcccccccccccCCccceeEEEEcC----cccHHHHHHHHHHHcCC-------------CcEEEEeC
Q 008461 79 QD--LARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP----LEQKLDMLWSFIKAHLN-------------SKILVFLT 139 (564)
Q Consensus 79 ~~--l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~----~~~Kl~~L~~~L~~~~~-------------~k~IVF~~ 139 (564)
.+ ...+.|++|+-+. .||.--.+.++.+. ..+-+..|.+|-....+ +--||||.
T Consensus 191 qEDi~~qL~L~~PVAiF-------kTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCR 263 (641)
T KOG0352|consen 191 QEDIAFQLKLRNPVAIF-------KTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCR 263 (641)
T ss_pred HHHHHHHHhhcCcHHhc-------cCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEec
Confidence 87 5677788887653 23332222222222 12344556666544332 34799999
Q ss_pred ChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHH
Q 008461 140 SCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYI 218 (564)
Q Consensus 140 t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~Yi 218 (564)
|+.+|+.++-.+.. .|++...+|+|+...+|.++.+.|.+ +..||+||..+++|+|- |+|++||++++|.++.-|.
T Consensus 264 TR~~cEq~AI~l~~--~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDK-p~VRFViHW~~~qn~AgYY 340 (641)
T KOG0352|consen 264 TRNECEQVAIMLEI--AGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDK-PDVRFVIHWSPSQNLAGYY 340 (641)
T ss_pred cHHHHHHHHHHhhh--cCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCC-cceeEEEecCchhhhHHHH
Confidence 99999999988876 49999999999999999999999999 99999999999999999 9999999999999999999
Q ss_pred HHhcccccCCCCceEEEEeCcchHHHHHHHHHc
Q 008461 219 HRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 251 (564)
Q Consensus 219 qRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~ 251 (564)
|-.||+||.|....|-+++..++...+.+|...
T Consensus 341 QESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 341 QESGRAGRDGKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred HhccccccCCCccceeeeecccchHHHHHHHhh
Confidence 999999999999999999999999988888653
No 75
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.87 E-value=2.1e-21 Score=217.70 Aligned_cols=126 Identities=25% Similarity=0.256 Sum_probs=112.9
Q ss_pred cCcccHHHHHHHHHHH--cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEe
Q 008461 113 VPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 189 (564)
Q Consensus 113 ~~~~~Kl~~L~~~L~~--~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaT 189 (564)
.....|...+...+.. ..+.|+||||+|...++.++..|... |++...+||+ +.+|...+..|.. ...|+|||
T Consensus 385 ~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~--gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIAT 460 (745)
T TIGR00963 385 KTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER--GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIAT 460 (745)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc--CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEe
Confidence 3455688888776633 34889999999999999999999985 9999999998 8899999999999 89999999
Q ss_pred cccccCCCcCCC-------CcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 190 DVASRGLDFNKA-------VDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 190 dv~arGLD~pp~-------V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
|+++||+|| +. .-+||+++.|.+...|.||+|||||.|.+|.+.+|++..+.-
T Consensus 461 nmAgRGtDI-~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 461 NMAGRGTDI-KLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred ccccCCcCC-CccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHH
Confidence 999999999 66 559999999999999999999999999999999999987654
No 76
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.86 E-value=9.4e-21 Score=216.30 Aligned_cols=243 Identities=16% Similarity=0.182 Sum_probs=172.7
Q ss_pred cccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCC---CCcEEEEeccCChhHHH
Q 008461 4 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK---HRQTFLFSATQTKSVQD 80 (564)
Q Consensus 4 ~r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~---~~Q~llfSATl~~~v~~ 80 (564)
+++.+++|||+||+++-..+.+.+. -+..+++|||||+|.+.+...+..+..|+..++. ..|++.+|||+|+. .+
T Consensus 118 ~~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~e 195 (766)
T COG1204 118 ERLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNA-EE 195 (766)
T ss_pred hhhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCH-HH
Confidence 4577899999999999666665544 4689999999999999998778888888776543 47999999999984 66
Q ss_pred HHHHhcCCCCcccccccccccCCccceeEEEEcCccc------HHHHHHHH-HHHc-CCCcEEEEeCChHHHHHHHHHHH
Q 008461 81 LARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ------KLDMLWSF-IKAH-LNSKILVFLTSCKQVKYVFEAFK 152 (564)
Q Consensus 81 l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~------Kl~~L~~~-L~~~-~~~k~IVF~~t~k~v~~l~e~L~ 152 (564)
++.+...++..-....... ..+....+.+....... ..+.++.. +... .++++||||+|++.+...+..+.
T Consensus 196 vA~wL~a~~~~~~~rp~~l-~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~ 274 (766)
T COG1204 196 VADWLNAKLVESDWRPVPL-RRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLR 274 (766)
T ss_pred HHHHhCCcccccCCCCccc-ccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHH
Confidence 7766555554211211111 12222333333333222 12222222 2222 26899999999999998888887
Q ss_pred hhC-------------------C----------------CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCC
Q 008461 153 KLR-------------------P----------------GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGL 196 (564)
Q Consensus 153 ~l~-------------------~----------------gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGL 196 (564)
... . -..++.||+||+...|..+...|+. ..+||+||..+++|+
T Consensus 275 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GV 354 (766)
T COG1204 275 IKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGV 354 (766)
T ss_pred HHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhc
Confidence 310 0 1236889999999999999999999 999999999999999
Q ss_pred CcCCCCcEEEE-----cC-----CCCCHhhHHHHhcccccCCC--CceEEEEeCcch-HHHHHHHHHc
Q 008461 197 DFNKAVDWVVQ-----VD-----CPEDVASYIHRVGRTARYNS--GGRSVLFLTPTE-MKMLEKLREA 251 (564)
Q Consensus 197 D~pp~V~~VI~-----~d-----~P~s~~~YiqRiGRtgR~g~--~G~~il~l~~~e-~~~l~~L~~~ 251 (564)
|+ | .+.||. |+ .+-++-+|+|++|||||.|- .|.++++.+..+ ..++......
T Consensus 355 NL-P-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~ 420 (766)
T COG1204 355 NL-P-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQ 420 (766)
T ss_pred CC-c-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhc
Confidence 99 7 677776 44 45678999999999999884 688888884443 3344444333
No 77
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=3.7e-20 Score=208.66 Aligned_cols=223 Identities=17% Similarity=0.228 Sum_probs=151.4
Q ss_pred CCcEEEEcHHHHHHHHhcC-------CCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHH
Q 008461 8 ELNILVCTPGRLLQHMDET-------PNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQD 80 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~-------~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~ 80 (564)
...|+|+|+..+....... ..+.-..+.+||+||||++... .+..++..+. ....+++|||+...-..
T Consensus 343 ~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~fr~il~~l~-a~~RLGLTATP~ReD~~ 417 (732)
T TIGR00603 343 EAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MFRRVLTIVQ-AHCKLGLTATLVREDDK 417 (732)
T ss_pred CCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HHHHHHHhcC-cCcEEEEeecCcccCCc
Confidence 3679999998764221110 1233356789999999998654 3444555554 45679999998643221
Q ss_pred HHH-HhcCCCCccccccc----ccccCCccce---------------------eEEEEcCcccHHHHHHHHHHHc--CCC
Q 008461 81 LAR-LSLKDPQYLSVHEE----SVTATPNRLQ---------------------QTAMIVPLEQKLDMLWSFIKAH--LNS 132 (564)
Q Consensus 81 l~~-~~l~~p~~i~v~~~----~~~~~p~~l~---------------------q~~~~~~~~~Kl~~L~~~L~~~--~~~ 132 (564)
... .++-.|..+...-. .....+.... ...+......|+..+..+++.+ .+.
T Consensus 418 ~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~ 497 (732)
T TIGR00603 418 ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGD 497 (732)
T ss_pred hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCC
Confidence 111 11112222111100 0000000000 0001122345677777777765 578
Q ss_pred cEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc--cCCeEEEecccccCCCcCCCCcEEEEcCC
Q 008461 133 KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLFCTDVASRGLDFNKAVDWVVQVDC 210 (564)
Q Consensus 133 k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~--~~~VLVaTdv~arGLD~pp~V~~VI~~d~ 210 (564)
++||||.+..++..++..| + +..+||++++.+|..+++.|+. ...+||+|+++.+|||+ |++++||++++
T Consensus 498 kiLVF~~~~~~l~~~a~~L-----~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDl-P~a~vvI~~s~ 569 (732)
T TIGR00603 498 KIIVFSDNVFALKEYAIKL-----G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDL-PEANVLIQISS 569 (732)
T ss_pred eEEEEeCCHHHHHHHHHHc-----C--CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCC-CCCCEEEEeCC
Confidence 9999999999988887766 2 3568999999999999999986 56999999999999999 99999999999
Q ss_pred C-CCHhhHHHHhcccccCCCCceE-------EEEeCcchHH
Q 008461 211 P-EDVASYIHRVGRTARYNSGGRS-------VLFLTPTEMK 243 (564)
Q Consensus 211 P-~s~~~YiqRiGRtgR~g~~G~~-------il~l~~~e~~ 243 (564)
| .+...|+||+||++|.+..|.+ +.|+++...+
T Consensus 570 ~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 570 HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 8 4999999999999999877765 7888876554
No 78
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=1.1e-19 Score=200.31 Aligned_cols=229 Identities=19% Similarity=0.229 Sum_probs=152.2
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCccc---HH---HHHHHHHHhCCCCCcEEEEeccCChhHH
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FK---KALNAIVSQLPKHRQTFLFSATQTKSVQ 79 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~g---f~---~~l~~Il~~lp~~~Q~llfSATl~~~v~ 79 (564)
.+..+|+|||++.+. ..+.++++|||||+|...-.+ .. ..+-..... ..+.+++++|||.+....
T Consensus 74 ~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPsles~ 144 (505)
T TIGR00595 74 NGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPSLESY 144 (505)
T ss_pred cCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCCHHHH
Confidence 356899999999773 356899999999999876432 11 122223333 348899999999664433
Q ss_pred HHHHHhcCCCCcccccccccccCCccceeEEEEcCccc----HHHHHHHHHHHcC--CCcEEEEeCChH-----------
Q 008461 80 DLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ----KLDMLWSFIKAHL--NSKILVFLTSCK----------- 142 (564)
Q Consensus 80 ~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~----Kl~~L~~~L~~~~--~~k~IVF~~t~k----------- 142 (564)
..+. -.....+............. ..++...... --..|+..|.... +.++|||+|++-
T Consensus 145 ~~~~--~g~~~~~~l~~r~~~~~~p~--v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 145 HNAK--QKAYRLLVLTRRVSGRKPPE--VKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred HHHh--cCCeEEeechhhhcCCCCCe--EEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCc
Confidence 3322 12222222211111111111 1122111111 1134555554433 578999966532
Q ss_pred -------------------------------------------------HHHHHHHHHHhhCCCCCeeeccCCCCHHHH-
Q 008461 143 -------------------------------------------------QVKYVFEAFKKLRPGIPLMCLYGRMKQDRR- 172 (564)
Q Consensus 143 -------------------------------------------------~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R- 172 (564)
-++.+.+.|.+.+|+.++..+|+++.+..+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 158889999999999999999999987766
Q ss_pred -HHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCC------CC------CHhhHHHHhcccccCCCCceEEEEeC
Q 008461 173 -MAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC------PE------DVASYIHRVGRTARYNSGGRSVLFLT 238 (564)
Q Consensus 173 -~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~------P~------s~~~YiqRiGRtgR~g~~G~~il~l~ 238 (564)
..+++.|++ +.+|||+|+++++|+|| |+|++|+.+|. |. ....|+|++||+||.+..|.+++...
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~-~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHF-PNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCC-CcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 899999999 99999999999999999 99999965443 32 35689999999999999999997765
Q ss_pred cchHHHHHHH
Q 008461 239 PTEMKMLEKL 248 (564)
Q Consensus 239 ~~e~~~l~~L 248 (564)
..+...+..+
T Consensus 380 ~p~~~~~~~~ 389 (505)
T TIGR00595 380 NPNHPAIQAA 389 (505)
T ss_pred CCCCHHHHHH
Confidence 5444444433
No 79
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.82 E-value=3.1e-19 Score=203.33 Aligned_cols=231 Identities=18% Similarity=0.176 Sum_probs=155.5
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCccc---HHHHHH--HHHHhCCCCCcEEEEeccCChhHHH
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG---FKKALN--AIVSQLPKHRQTFLFSATQTKSVQD 80 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~g---f~~~l~--~Il~~lp~~~Q~llfSATl~~~v~~ 80 (564)
.+.++|+||||+++. ..+.++.+||+||+|...-.+ ...... .++.....+.|++++|||.+.....
T Consensus 239 ~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~~s~~ 310 (679)
T PRK05580 239 RGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSLESLA 310 (679)
T ss_pred cCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCHHHHH
Confidence 357899999999874 457899999999999765332 111122 2333445689999999997755443
Q ss_pred HHHHhcCCCCcccccccccccCCccceeEEEEcCcc-------cHHHHHHHHHHHcC--CCcEEEEeCCh----------
Q 008461 81 LARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE-------QKLDMLWSFIKAHL--NSKILVFLTSC---------- 141 (564)
Q Consensus 81 l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~-------~Kl~~L~~~L~~~~--~~k~IVF~~t~---------- 141 (564)
.+.. .....+.+.......... ....+..... .--..|+..++... +.++|||+|++
T Consensus 311 ~~~~--g~~~~~~l~~r~~~~~~p--~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~ 386 (679)
T PRK05580 311 NAQQ--GRYRLLRLTKRAGGARLP--EVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRD 386 (679)
T ss_pred HHhc--cceeEEEeccccccCCCC--eEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhh
Confidence 3321 122222222111101011 1111111110 01134555554433 56899997741
Q ss_pred --------------------------------------------------HHHHHHHHHHHhhCCCCCeeeccCCCCH--
Q 008461 142 --------------------------------------------------KQVKYVFEAFKKLRPGIPLMCLYGRMKQ-- 169 (564)
Q Consensus 142 --------------------------------------------------k~v~~l~e~L~~l~~gi~v~~lHg~m~~-- 169 (564)
..++.+.+.|.+.+|+.++..+||++.+
T Consensus 387 Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~ 466 (679)
T PRK05580 387 CGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRK 466 (679)
T ss_pred CcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccc
Confidence 1457888899999999999999999874
Q ss_pred HHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCC--CC----------HhhHHHHhcccccCCCCceEEEE
Q 008461 170 DRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCP--ED----------VASYIHRVGRTARYNSGGRSVLF 236 (564)
Q Consensus 170 ~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P--~s----------~~~YiqRiGRtgR~g~~G~~il~ 236 (564)
.++..+++.|++ +.+|||+|+++++|+|| |+|++|+.+|.. -+ ...|+|++||+||.+..|.+++.
T Consensus 467 ~~~~~~l~~f~~g~~~ILVgT~~iakG~d~-p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 467 GALEQLLAQFARGEADILIGTQMLAKGHDF-PNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred hhHHHHHHHHhcCCCCEEEEChhhccCCCC-CCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 678999999999 99999999999999999 999999766543 22 36799999999999999999998
Q ss_pred eCcchHHHHHHHH
Q 008461 237 LTPTEMKMLEKLR 249 (564)
Q Consensus 237 l~~~e~~~l~~L~ 249 (564)
....+...+..+.
T Consensus 546 T~~p~~~~~~~~~ 558 (679)
T PRK05580 546 TYHPEHPVIQALL 558 (679)
T ss_pred eCCCCCHHHHHHH
Confidence 8766555554443
No 80
>PRK09694 helicase Cas3; Provisional
Probab=99.81 E-value=7.3e-19 Score=202.91 Aligned_cols=216 Identities=21% Similarity=0.335 Sum_probs=141.3
Q ss_pred CcEEEEcHHHHHHHHhcCCCCCCCCc----ceEEEeccCccCcccHHHHHHHHHHhCC-CCCcEEEEeccCChhHHH-HH
Q 008461 9 LNILVCTPGRLLQHMDETPNFDCSQL----QILILDEADRILDVGFKKALNAIVSQLP-KHRQTFLFSATQTKSVQD-LA 82 (564)
Q Consensus 9 ~~ILV~TPgrLl~~L~~~~~~~~~~L----~~lVlDEAD~lld~gf~~~l~~Il~~lp-~~~Q~llfSATl~~~v~~-l~ 82 (564)
.+|+|||+.+++..+...+...++.+ ++|||||+|.+ +.-....+..+++.+. ....+|++|||+|..... +.
T Consensus 411 api~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~ 489 (878)
T PRK09694 411 GQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLL 489 (878)
T ss_pred CCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHH
Confidence 68999999999855544332222333 48999999986 4333455666666553 256799999999988765 33
Q ss_pred HHhcCC-C-----Cccccc--c-c---c--cccCCc--cceeEEEE--c--Cc-ccHHHHHHHHHHH-cCCCcEEEEeCC
Q 008461 83 RLSLKD-P-----QYLSVH--E-E---S--VTATPN--RLQQTAMI--V--PL-EQKLDMLWSFIKA-HLNSKILVFLTS 140 (564)
Q Consensus 83 ~~~l~~-p-----~~i~v~--~-~---~--~~~~p~--~l~q~~~~--~--~~-~~Kl~~L~~~L~~-~~~~k~IVF~~t 140 (564)
..+... + .|-.+. . . . ....+. .....+.+ . .. ......+..++.. ..++++||||||
T Consensus 490 ~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NT 569 (878)
T PRK09694 490 DTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNL 569 (878)
T ss_pred HHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECC
Confidence 332111 1 010000 0 0 0 000000 01111111 1 10 1112222233322 236789999999
Q ss_pred hHHHHHHHHHHHhhC-CCCCeeeccCCCCHHHH----HHHHHHH-hc-c---CCeEEEecccccCCCcCCCCcEEEEcCC
Q 008461 141 CKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRR----MAIYAQF-CE-K---RSVLFCTDVASRGLDFNKAVDWVVQVDC 210 (564)
Q Consensus 141 ~k~v~~l~e~L~~l~-~gi~v~~lHg~m~~~~R----~~i~~~F-~~-~---~~VLVaTdv~arGLD~pp~V~~VI~~d~ 210 (564)
++.++.+|+.|+... +...+..+||++.+.+| ..+++.| ++ + ..|||||+++++|||| + ++++|...+
T Consensus 570 V~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d-~DvlItdla 647 (878)
T PRK09694 570 VDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-D-FDWLITQLC 647 (878)
T ss_pred HHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-C-CCeEEECCC
Confidence 999999999998753 23679999999999999 4577888 43 3 4699999999999999 5 899999988
Q ss_pred CCCHhhHHHHhcccccCCC
Q 008461 211 PEDVASYIHRVGRTARYNS 229 (564)
Q Consensus 211 P~s~~~YiqRiGRtgR~g~ 229 (564)
| ++.|+||+||+||.+.
T Consensus 648 P--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 648 P--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred C--HHHHHHHHhccCCCCC
Confidence 8 7899999999999986
No 81
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=193.74 Aligned_cols=109 Identities=23% Similarity=0.360 Sum_probs=95.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHh-hCCCCCeeecc--------CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKK-LRPGIPLMCLY--------GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 200 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~-l~~gi~v~~lH--------g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp 200 (564)
..++||||.++..|..+...|.. ..+|+...++- .+|+|....+++++|+. ..+|||||++++.|||| +
T Consensus 413 dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI-~ 491 (746)
T KOG0354|consen 413 DSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDI-G 491 (746)
T ss_pred CccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCc-c
Confidence 57899999999999999999883 33444443333 38999999999999999 99999999999999999 8
Q ss_pred CCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchH
Q 008461 201 AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 242 (564)
Q Consensus 201 ~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~ 242 (564)
.|++||-||+..++...+||.|| ||+ +.|.++++++..+.
T Consensus 492 ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 492 ECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEV 531 (746)
T ss_pred cccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhH
Confidence 99999999999999999999999 998 67999999985544
No 82
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.80 E-value=7.2e-19 Score=198.69 Aligned_cols=134 Identities=25% Similarity=0.355 Sum_probs=120.7
Q ss_pred CcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec
Q 008461 114 PLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 190 (564)
Q Consensus 114 ~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd 190 (564)
+...++..|+..|+.. .+.++||||+|++.++.+++.|... |+++..+||++++.+|..++..|+. ...|||||+
T Consensus 423 ~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~--gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~ 500 (655)
T TIGR00631 423 PTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL--GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN 500 (655)
T ss_pred eccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh--ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC
Confidence 4556777888877654 3679999999999999999999985 8999999999999999999999999 999999999
Q ss_pred ccccCCCcCCCCcEEEEcC-----CCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHHHHc
Q 008461 191 VASRGLDFNKAVDWVVQVD-----CPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 251 (564)
Q Consensus 191 v~arGLD~pp~V~~VI~~d-----~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~ 251 (564)
++++|+|+ |.+++||++| .|.+..+|+||+|||||. ..|.+++|+...+..+...+.+.
T Consensus 501 ~L~rGfDi-P~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDL-PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeee-CCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 99999999 9999999999 799999999999999998 68999999998887777777654
No 83
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.80 E-value=4.9e-18 Score=186.48 Aligned_cols=273 Identities=20% Similarity=0.261 Sum_probs=192.5
Q ss_pred ccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCC-CCcEEEEeccCChhHHHHHH
Q 008461 5 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPK-HRQTFLFSATQTKSVQDLAR 83 (564)
Q Consensus 5 r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~-~~Q~llfSATl~~~v~~l~~ 83 (564)
..+.++|+|||-.-+.+ ...+.+|.++|+||-|| |+..-+..+..-.. .+.++.||||+-+....+.-
T Consensus 362 ~~G~~~ivVGTHALiQd------~V~F~~LgLVIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~ 430 (677)
T COG1200 362 ASGEIDIVVGTHALIQD------KVEFHNLGLVIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTA 430 (677)
T ss_pred hCCCCCEEEEcchhhhc------ceeecceeEEEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHH
Confidence 34579999999864432 46679999999999999 67777777777776 68999999997765544443
Q ss_pred HhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCCh--------HHHHHHHHHHHh
Q 008461 84 LSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSC--------KQVKYVFEAFKK 153 (564)
Q Consensus 84 ~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~--------k~v~~l~e~L~~ 153 (564)
..--+-..| .+-...++| .+.+++ ...+...++.++... .+.++.|.|+-. ..+..+|+.|..
T Consensus 431 fgDldvS~I--dElP~GRkp---I~T~~i--~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~ 503 (677)
T COG1200 431 FGDLDVSII--DELPPGRKP---ITTVVI--PHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKS 503 (677)
T ss_pred hccccchhh--ccCCCCCCc---eEEEEe--ccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHH
Confidence 322222222 111111222 122222 235566666666543 378899999753 477888999998
Q ss_pred hCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC-CHhhHHHHhcccccCCCCc
Q 008461 154 LRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGG 231 (564)
Q Consensus 154 l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~-s~~~YiqRiGRtgR~g~~G 231 (564)
.+|++.+..+||+|+..++.+++.+|++ ...|||||.|++.|||+ |+.++.|.+++-. ..++..|-.||+||.+..+
T Consensus 504 ~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdV-PnATvMVIe~AERFGLaQLHQLRGRVGRG~~qS 582 (677)
T COG1200 504 FLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDV-PNATVMVIENAERFGLAQLHQLRGRVGRGDLQS 582 (677)
T ss_pred HcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccC-CCCeEEEEechhhhhHHHHHHhccccCCCCcce
Confidence 8899999999999999999999999999 99999999999999999 8999999998754 8999999999999999999
Q ss_pred eEEEEeCcch----HHHHHHHHHc--CCCcccccccccc---c-----hhHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 008461 232 RSVLFLTPTE----MKMLEKLREA--KIPIHFTKANTKR---L-----QPVSGLLAALLVKYPDMQHRAQKAFITYLRS 296 (564)
Q Consensus 232 ~~il~l~~~e----~~~l~~L~~~--~i~i~~~~~~~~~---~-----~~i~~~l~~~~~~~~~l~~~a~~af~sy~rs 296 (564)
.|++++.+.. ...++-|.+. |..|.+.++..+. + .-...-.-+-+..|..+.+.|++.....+.+
T Consensus 583 yC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLklRGpGe~lG~rQSG~~~f~~Adl~~D~~ile~ar~~a~~~~~~ 661 (677)
T COG1200 583 YCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLKLRGPGELLGTRQSGLPEFRVADLVRDYDILEEARKDAAKLLSR 661 (677)
T ss_pred EEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHhccCCccccCCcccCCcceEEeeHHhhHHHHHHHHHHHHHHHhh
Confidence 9999999876 2355555554 6666555443211 0 0000000112334666777776665555543
No 84
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=200.22 Aligned_cols=276 Identities=19% Similarity=0.189 Sum_probs=192.7
Q ss_pred ccCCCcEEEEcHHHHHHHHhcC---CCCCCCCcceEEEeccCccCcccHHHHHHHH-------HHhCCCCCcEEEEeccC
Q 008461 5 HVNELNILVCTPGRLLQHMDET---PNFDCSQLQILILDEADRILDVGFKKALNAI-------VSQLPKHRQTFLFSATQ 74 (564)
Q Consensus 5 r~~~~~ILV~TPgrLl~~L~~~---~~~~~~~L~~lVlDEAD~lld~gf~~~l~~I-------l~~lp~~~Q~llfSATl 74 (564)
+.+.++||++||.+|..++... +.+.+++|++||+||+|..-. .|+..+--+ +...+.+.|+++.|||+
T Consensus 164 ~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG-v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~ 242 (851)
T COG1205 164 IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG-VQGSEVALLLRRLLRRLRRYGSPLQIICTSATL 242 (851)
T ss_pred HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc-cchhHHHHHHHHHHHHHhccCCCceEEEEeccc
Confidence 3578999999999997755433 234478999999999996533 244443333 33345688999999999
Q ss_pred ChhHHHHHHHhcCCCCcccccccccccCCccceeEEEEcC---------cccHHHHHHHHHHHc--CCCcEEEEeCChHH
Q 008461 75 TKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP---------LEQKLDMLWSFIKAH--LNSKILVFLTSCKQ 143 (564)
Q Consensus 75 ~~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~---------~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~ 143 (564)
.+.......+...+.... +... ..|.....++...+ -..+...+..++... .+-++|||+.+++.
T Consensus 243 ~np~e~~~~l~~~~f~~~-v~~~---g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~ 318 (851)
T COG1205 243 ANPGEFAEELFGRDFEVP-VDED---GSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQ 318 (851)
T ss_pred cChHHHHHHhcCCcceee-ccCC---CCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhh
Confidence 998776666665555543 3222 23445555555545 123333333333322 37899999999999
Q ss_pred HHHHHH----HHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC-CHh
Q 008461 144 VKYVFE----AFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE-DVA 215 (564)
Q Consensus 144 v~~l~e----~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~-s~~ 215 (564)
|+.++. .+.... -...+..++|+|...+|..+...|+. +..++++|+.+.-|+|+ .++++||.++.|. +..
T Consensus 319 ~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelgidi-G~ldavi~~g~P~~s~~ 397 (851)
T COG1205 319 VELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDI-GSLDAVIAYGYPGVSVL 397 (851)
T ss_pred hhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceee-hhhhhHhhcCCCCchHH
Confidence 999983 333321 01458899999999999999999999 99999999999999999 9999999999999 899
Q ss_pred hHHHHhcccccCCCCceEEEEeCcchHH--HHHHHHHc---C-CCccccccccccchhHHHHHHHHHhcChhHHHHH
Q 008461 216 SYIHRVGRTARYNSGGRSVLFLTPTEMK--MLEKLREA---K-IPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRA 286 (564)
Q Consensus 216 ~YiqRiGRtgR~g~~G~~il~l~~~e~~--~l~~L~~~---~-i~i~~~~~~~~~~~~i~~~l~~~~~~~~~l~~~a 286 (564)
+|+||+||+||.++.+..++++..+-.. |+..-... + .+.+...++......+..++.......|......
T Consensus 398 ~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~~~~~~~e~~~~~~~n~~~l~~hl~~~~~E~p~~~~~~ 474 (851)
T COG1205 398 SFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLETGFGPVESVRVDDNNEYLLDGHLLCADAELPLKDREL 474 (851)
T ss_pred HHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhhcccCcccccccCCCCcchhhhhHHhhCccCCccchhc
Confidence 9999999999999777777777643222 33222211 2 4556666666655556666666665555443333
No 85
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.78 E-value=2.8e-18 Score=194.65 Aligned_cols=128 Identities=23% Similarity=0.321 Sum_probs=112.4
Q ss_pred cccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecc
Q 008461 115 LEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 191 (564)
Q Consensus 115 ~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv 191 (564)
...++..|...|... .+.++||||+|+..++.+++.|... |+++..+||++++.+|..++..|+. ...|||||++
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~--gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~ 505 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINL 505 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc--ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCH
Confidence 445667777777653 3679999999999999999999885 8999999999999999999999999 9999999999
Q ss_pred cccCCCcCCCCcEEEEcCC-----CCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHH
Q 008461 192 ASRGLDFNKAVDWVVQVDC-----PEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 246 (564)
Q Consensus 192 ~arGLD~pp~V~~VI~~d~-----P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~ 246 (564)
+++|+|+ |++++||++|. |.+..+|+||+|||||. ..|.+++|++..+..+.+
T Consensus 506 L~rGfdl-p~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~ 563 (652)
T PRK05298 506 LREGLDI-PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQK 563 (652)
T ss_pred HhCCccc-cCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHH
Confidence 9999999 99999999985 78999999999999996 789999999964333333
No 86
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.78 E-value=8.6e-18 Score=187.19 Aligned_cols=236 Identities=19% Similarity=0.211 Sum_probs=172.2
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhcC
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK 87 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l~ 87 (564)
...++|+|.+.|..+|.++..+ ++++.+|||||+|.+-|...+-.+..++-++|+..++|++|||.|+.....-+.+-.
T Consensus 379 eAsCLIMTTEILRsMLYrgadl-iRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~EFA~WIGRt 457 (1248)
T KOG0947|consen 379 EASCLIMTTEILRSMLYRGADL-IRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNTLEFADWIGRT 457 (1248)
T ss_pred CcceEeehHHHHHHHHhcccch-hhccceEEEeeeeecccccccccceeeeeeccccceEEEEeccCCChHHHHHHhhhc
Confidence 4679999999999999988554 789999999999999999999999999999999999999999999987654444332
Q ss_pred CCCcccccccccccCCccceeEEEEc------------------------------------------------------
Q 008461 88 DPQYLSVHEESVTATPNRLQQTAMIV------------------------------------------------------ 113 (564)
Q Consensus 88 ~p~~i~v~~~~~~~~p~~l~q~~~~~------------------------------------------------------ 113 (564)
.-..|.|.... ..|.-|.|++..-
T Consensus 458 K~K~IyViST~--kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~ 535 (1248)
T KOG0947|consen 458 KQKTIYVISTS--KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNY 535 (1248)
T ss_pred cCceEEEEecC--CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCC
Confidence 22222221110 1111122111110
Q ss_pred ---------Cc--ccH---HHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhC------------------------
Q 008461 114 ---------PL--EQK---LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR------------------------ 155 (564)
Q Consensus 114 ---------~~--~~K---l~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~------------------------ 155 (564)
+. ..+ ...|+..|+...--|+||||-|++.|+..+++|..+.
T Consensus 536 ~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~ 615 (1248)
T KOG0947|consen 536 HNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGE 615 (1248)
T ss_pred CCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChh
Confidence 00 001 2233334444435699999999999999988886532
Q ss_pred ----C---------CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC---------
Q 008461 156 ----P---------GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE--------- 212 (564)
Q Consensus 156 ----~---------gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~--------- 212 (564)
| .-.++++|||+-+--+.-+.-.|+. -.+|||||..+|+|||. | .++||.-.+-.
T Consensus 616 DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNM-P-ARtvVF~Sl~KhDG~efR~L 693 (1248)
T KOG0947|consen 616 DRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNM-P-ARTVVFSSLRKHDGNEFREL 693 (1248)
T ss_pred hccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCC-C-ceeEEeeehhhccCcceeec
Confidence 1 1137889999999999999999999 88999999999999999 7 67777765542
Q ss_pred CHhhHHHHhcccccCCC--CceEEEEeCcc--hHHHHHHH
Q 008461 213 DVASYIHRVGRTARYNS--GGRSVLFLTPT--EMKMLEKL 248 (564)
Q Consensus 213 s~~~YiqRiGRtgR~g~--~G~~il~l~~~--e~~~l~~L 248 (564)
.+-.|.|++|||||.|- .|.+|++.... +...+++|
T Consensus 694 ~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~l 733 (1248)
T KOG0947|consen 694 LPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRL 733 (1248)
T ss_pred CChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhH
Confidence 68899999999999994 68888887654 33355554
No 87
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.76 E-value=1e-17 Score=149.80 Aligned_cols=126 Identities=35% Similarity=0.580 Sum_probs=113.5
Q ss_pred eeEEEEcCcccHHHHHHHHHHHcC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cC
Q 008461 107 QQTAMIVPLEQKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR 183 (564)
Q Consensus 107 ~q~~~~~~~~~Kl~~L~~~L~~~~--~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~ 183 (564)
.+.|...+ ..|...+..++.... +.++||||++...++.++..|.. ++..+..+||+++...|..++..|.. ..
T Consensus 3 ~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 79 (131)
T cd00079 3 KQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK--PGIKVAALHGDGSQEEREEVLKDFREGEI 79 (131)
T ss_pred EEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh--cCCcEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 34444433 378888999888775 78999999999999999999987 58899999999999999999999999 88
Q ss_pred CeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEE
Q 008461 184 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 236 (564)
Q Consensus 184 ~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~ 236 (564)
.|||||.++++|+|+ |.+++||.+++|++...|+|++||++|.|..|.++++
T Consensus 80 ~ili~t~~~~~G~d~-~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 80 VVLVATDVIARGIDL-PNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cEEEEcChhhcCcCh-hhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999 8999999999999999999999999999998888764
No 88
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=1.4e-17 Score=187.32 Aligned_cols=242 Identities=20% Similarity=0.266 Sum_probs=176.1
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCC---CCCCCcceEEEeccCccCcccHHHHHHHHHHhC-------CCCCcEEEEeccCC
Q 008461 6 VNELNILVCTPGRLLQHMDETPN---FDCSQLQILILDEADRILDVGFKKALNAIVSQL-------PKHRQTFLFSATQT 75 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~---~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l-------p~~~Q~llfSATl~ 75 (564)
+..++|||+||+.+ +.+.+... --++.+.+|||||+|.|-+. .+..+..|+.+. ....+++++|||+|
T Consensus 209 i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEtiVaRtlr~vessqs~IRivgLSATlP 286 (1230)
T KOG0952|consen 209 IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETIVARTLRLVESSQSMIRIVGLSATLP 286 (1230)
T ss_pred HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHHHHHHHHHHHhhhhheEEEEeeccCC
Confidence 56799999999998 66654432 12578899999999976654 577888887654 34678999999999
Q ss_pred hhHHHHHHHhcCCCCcccccccccccCCccceeEEEEcCcc-----------cHHHHHHHHHHHcCCCcEEEEeCChHHH
Q 008461 76 KSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE-----------QKLDMLWSFIKAHLNSKILVFLTSCKQV 144 (564)
Q Consensus 76 ~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~-----------~Kl~~L~~~L~~~~~~k~IVF~~t~k~v 144 (564)
+ ..+++...--||. ..+-.....-.|..+.+.++.++.. -..+.+.+++.. +.+++|||.++..+
T Consensus 287 N-~eDvA~fL~vn~~-~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~--g~qVlvFvhsR~~T 362 (1230)
T KOG0952|consen 287 N-YEDVARFLRVNPY-AGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE--GHQVLVFVHSRNET 362 (1230)
T ss_pred C-HHHHHHHhcCCCc-cceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHc--CCeEEEEEecChHH
Confidence 8 5677776555542 2222222223456677777766544 122344444443 68999999999888
Q ss_pred HHHHHHHHhhC----------CC-----------CCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCC
Q 008461 145 KYVFEAFKKLR----------PG-----------IPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAV 202 (564)
Q Consensus 145 ~~l~e~L~~l~----------~g-----------i~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V 202 (564)
...+..|.+.. ++ ..+..+|+||...+|..+...|.. ...||+||..++.|+|+ | .
T Consensus 363 i~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNL-P-A 440 (1230)
T KOG0952|consen 363 IRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNL-P-A 440 (1230)
T ss_pred HHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCC-c-c
Confidence 87777776531 11 236789999999999999999999 89999999999999999 7 6
Q ss_pred cEEEEcCCCC-----------CHhhHHHHhcccccCC--CCceEEEEeCcchHHHHHHHHHcCCCc
Q 008461 203 DWVVQVDCPE-----------DVASYIHRVGRTARYN--SGGRSVLFLTPTEMKMLEKLREAKIPI 255 (564)
Q Consensus 203 ~~VI~~d~P~-----------s~~~YiqRiGRtgR~g--~~G~~il~l~~~e~~~l~~L~~~~i~i 255 (564)
.+||.-+.+. +.-..+|..|||||.+ ..|.++++.+..-...+..|....-||
T Consensus 441 ~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~pi 506 (1230)
T KOG0952|consen 441 YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPI 506 (1230)
T ss_pred eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChh
Confidence 8888866552 5668899999999964 679999999887777555554443333
No 89
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=2.7e-17 Score=186.25 Aligned_cols=203 Identities=16% Similarity=0.224 Sum_probs=147.0
Q ss_pred CcceEEEeccC-ccCc-ccHHHHHHHHHHh---CC--CC----------------CcEEEEeccCChhHHHHHHHhcCCC
Q 008461 33 QLQILILDEAD-RILD-VGFKKALNAIVSQ---LP--KH----------------RQTFLFSATQTKSVQDLARLSLKDP 89 (564)
Q Consensus 33 ~L~~lVlDEAD-~lld-~gf~~~l~~Il~~---lp--~~----------------~Q~llfSATl~~~v~~l~~~~l~~p 89 (564)
+=.++|+||.- |++. ..|..-+...++. ++ +. ..+.++|+|....-..+...+.-+-
T Consensus 321 d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~v 400 (796)
T PRK12906 321 DGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEV 400 (796)
T ss_pred CCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCE
Confidence 33677788866 4442 3355555555543 11 11 2456888888766666655554433
Q ss_pred CcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCC
Q 008461 90 QYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRM 167 (564)
Q Consensus 90 ~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m 167 (564)
..|..+.+. .... ....+......|...+...+... .+.|+||||+|+..++.++..|.+. |+++..+||++
T Consensus 401 v~IPtnkp~---~r~d-~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~--gi~~~~Lna~~ 474 (796)
T PRK12906 401 ITIPTNRPV---IRKD-SPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA--GIPHAVLNAKN 474 (796)
T ss_pred EEcCCCCCe---eeee-CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC--CCCeeEecCCc
Confidence 222221111 1111 11233445677999999888543 5899999999999999999999985 99999999998
Q ss_pred CHHHHHHHHHHHhccCCeEEEecccccCCCcC--CCCc-----EEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcc
Q 008461 168 KQDRRMAIYAQFCEKRSVLFCTDVASRGLDFN--KAVD-----WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240 (564)
Q Consensus 168 ~~~~R~~i~~~F~~~~~VLVaTdv~arGLD~p--p~V~-----~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~ 240 (564)
.+.++..+...++. ..|+|||++|+||+||+ ++|. +||+++.|.+...|.|++|||||.|.+|.+.+|++..
T Consensus 475 ~~~Ea~ii~~ag~~-g~VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 475 HAKEAEIIMNAGQR-GAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred HHHHHHHHHhcCCC-ceEEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 87766666665554 44999999999999994 3788 9999999999999999999999999999999999987
Q ss_pred hH
Q 008461 241 EM 242 (564)
Q Consensus 241 e~ 242 (564)
|.
T Consensus 554 D~ 555 (796)
T PRK12906 554 DD 555 (796)
T ss_pred ch
Confidence 54
No 90
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=4.7e-18 Score=185.34 Aligned_cols=234 Identities=20% Similarity=0.202 Sum_probs=170.6
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc-
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL- 86 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l- 86 (564)
....||+|.+.|..+|.+++.+ +..+.++|+||+|.|-|...+-.|..-+-.+|++.+.+++|||+|+......+.+-
T Consensus 211 ~ASCLVMTTEILRsMLYRGSEv-mrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI~~i 289 (1041)
T KOG0948|consen 211 DASCLVMTTEILRSMLYRGSEV-MREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWICHI 289 (1041)
T ss_pred CCceeeeHHHHHHHHHhccchH-hheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHHHHH
Confidence 4678999999999999887544 78999999999999999888888888888999999999999999998655433321
Q ss_pred -CCCCcccccccccccCCccceeE---------EEEcCccc-----HHHH------------------------------
Q 008461 87 -KDPQYLSVHEESVTATPNRLQQT---------AMIVPLEQ-----KLDM------------------------------ 121 (564)
Q Consensus 87 -~~p~~i~v~~~~~~~~p~~l~q~---------~~~~~~~~-----Kl~~------------------------------ 121 (564)
+.|..|.-. .. .|..|+|+ |++++... .+..
T Consensus 290 hkQPcHVVYT--dy--RPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~ 365 (1041)
T KOG0948|consen 290 HKQPCHVVYT--DY--RPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKG 365 (1041)
T ss_pred hcCCceEEee--cC--CCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCC
Confidence 233332111 11 12334444 33333321 1111
Q ss_pred --------HHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhC----------------------------CC--------
Q 008461 122 --------LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR----------------------------PG-------- 157 (564)
Q Consensus 122 --------L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~----------------------------~g-------- 157 (564)
+...+-.....|+|||+-|++.|+.++-.+.++. |.
T Consensus 366 ~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL 445 (1041)
T KOG0948|consen 366 PGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLL 445 (1041)
T ss_pred CCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHH
Confidence 1111222234589999999999999987665531 11
Q ss_pred -CCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC---------CHhhHHHHhccccc
Q 008461 158 -IPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE---------DVASYIHRVGRTAR 226 (564)
Q Consensus 158 -i~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~---------s~~~YiqRiGRtgR 226 (564)
-.+.++|||+-+--+..|.-.|.. -.+|||||..++.|||. | ...||....-. +.-.|||+.|||||
T Consensus 446 ~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNM-P-AkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGR 523 (1041)
T KOG0948|consen 446 RRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNM-P-AKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGR 523 (1041)
T ss_pred HhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCC-c-ceeEEEeeccccCCcceeeecccceEEecccccc
Confidence 126789999999999999999999 88999999999999999 7 67777765432 67899999999999
Q ss_pred CCC--CceEEEEeCcchHH-HHHHH
Q 008461 227 YNS--GGRSVLFLTPTEMK-MLEKL 248 (564)
Q Consensus 227 ~g~--~G~~il~l~~~e~~-~l~~L 248 (564)
.|. .|.||+++...-.+ ..+.|
T Consensus 524 RG~DdrGivIlmiDekm~~~~ak~m 548 (1041)
T KOG0948|consen 524 RGIDDRGIVILMIDEKMEPQVAKDM 548 (1041)
T ss_pred cCCCCCceEEEEecCcCCHHHHHHH
Confidence 995 69999999865333 44444
No 91
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=3.8e-17 Score=186.27 Aligned_cols=202 Identities=18% Similarity=0.200 Sum_probs=151.3
Q ss_pred CcceEEEeccC-ccCc-ccHHHHHHHHHHh---CC--CCC----------------cEEEEeccCChhHHHHHHHhcCCC
Q 008461 33 QLQILILDEAD-RILD-VGFKKALNAIVSQ---LP--KHR----------------QTFLFSATQTKSVQDLARLSLKDP 89 (564)
Q Consensus 33 ~L~~lVlDEAD-~lld-~gf~~~l~~Il~~---lp--~~~----------------Q~llfSATl~~~v~~l~~~~l~~p 89 (564)
+=+++|+||.- |++. ..|..-|...++. ++ ... .+.++|+|....-..+...+--+-
T Consensus 479 dgkV~IVDe~TGRim~gRr~sdGLHQaIEaKE~v~i~~e~~t~AtIT~QnfFr~Y~kLaGMTGTA~te~~Ef~~iY~L~V 558 (1025)
T PRK12900 479 NGQVMIVDEFTGRILPGRRYSDGLHQAIEAKENVKIEGETQTMATITIQNFFRLYKKLAGMTGTAETEASEFFEIYKLDV 558 (1025)
T ss_pred CCEEEEEECCCCccCCCCCcchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHHhchhhcccCCCChhHHHHHHHHhCCcE
Confidence 34677889966 5554 2255555555443 11 122 455788888777666766554443
Q ss_pred CcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCC
Q 008461 90 QYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRM 167 (564)
Q Consensus 90 ~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m 167 (564)
..|..+.+.. .... ...+......|+..|...+... .+.|+||||+|+..++.++..|... |+++..||+
T Consensus 559 v~IPTnrP~~---R~D~-~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~--gI~h~vLna-- 630 (1025)
T PRK12900 559 VVIPTNKPIV---RKDM-DDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAK--RIAHNVLNA-- 630 (1025)
T ss_pred EECCCCCCcc---eecC-CCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHc--CCCceeecC--
Confidence 3332222111 1111 1234456678999999999654 5789999999999999999999985 999999997
Q ss_pred CHHHHHHHHHHHhc-cCCeEEEecccccCCCcCC---CCcE-----EEEcCCCCCHhhHHHHhcccccCCCCceEEEEeC
Q 008461 168 KQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK---AVDW-----VVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238 (564)
Q Consensus 168 ~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp---~V~~-----VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~ 238 (564)
.+.+|...+..|.. ...|+||||+|+||+|| + +|.. ||+++.|.+...|.||+|||||.|.+|.+++|++
T Consensus 631 kq~~REa~Iia~AG~~g~VtIATNMAGRGtDI-kl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvS 709 (1025)
T PRK12900 631 KQHDREAEIVAEAGQKGAVTIATNMAGRGTDI-KLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVS 709 (1025)
T ss_pred CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCc-CCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEec
Confidence 68899999999999 89999999999999999 6 4544 4999999999999999999999999999999999
Q ss_pred cchHH
Q 008461 239 PTEMK 243 (564)
Q Consensus 239 ~~e~~ 243 (564)
..+.-
T Consensus 710 leD~L 714 (1025)
T PRK12900 710 LEDEL 714 (1025)
T ss_pred hhHHH
Confidence 87654
No 92
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.73 E-value=3.7e-17 Score=166.96 Aligned_cols=236 Identities=17% Similarity=0.264 Sum_probs=181.4
Q ss_pred CCCcEEEEcHHHHHHH---Hhc-CCCCCCCCcceEEEeccCccCccc--HHHHHH--HHHHhCCCCCcEEEEeccCChhH
Q 008461 7 NELNILVCTPGRLLQH---MDE-TPNFDCSQLQILILDEADRILDVG--FKKALN--AIVSQLPKHRQTFLFSATQTKSV 78 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~---L~~-~~~~~~~~L~~lVlDEAD~lld~g--f~~~l~--~Il~~lp~~~Q~llfSATl~~~v 78 (564)
....+|..||+.+... |.. ...+....+.++.+||+|++..|| |+..+. .|+.+.-++..+++++||.++.|
T Consensus 185 se~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~v 264 (695)
T KOG0353|consen 185 SEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHV 264 (695)
T ss_pred ceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcch
Confidence 3577999999988521 211 124556788999999999999998 665544 45666666899999999999998
Q ss_pred HHHHHHhcCCCCcccccccccccCCccceeEEEEcC--cccHHHHHHHHHHHc-CCCcEEEEeCChHHHHHHHHHHHhhC
Q 008461 79 QDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP--LEQKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLR 155 (564)
Q Consensus 79 ~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~--~~~Kl~~L~~~L~~~-~~~k~IVF~~t~k~v~~l~e~L~~l~ 155 (564)
.+-+...+.--..+..... ....++.+.+..-| .++-+..+..+|+.. .++.-||||-+.+.++.+...|+.+
T Consensus 265 l~d~k~il~ie~~~tf~a~---fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~- 340 (695)
T KOG0353|consen 265 LDDAKDILCIEAAFTFRAG---FNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH- 340 (695)
T ss_pred hhHHHHHHhHHhhheeecc---cCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc-
Confidence 8876655442222222211 11233433333222 234455555666543 3677899999999999999999986
Q ss_pred CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHH---------------
Q 008461 156 PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIH--------------- 219 (564)
Q Consensus 156 ~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~Yiq--------------- 219 (564)
|+....+|+.|.+.+|..+-+.|.. ++.|+|||-.+++|||- |+|++||+..+|.+.+.|.|
T Consensus 341 -gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidk-pdvrfvihhsl~ksienyyqasarillrmtkqknk 418 (695)
T KOG0353|consen 341 -GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDK-PDVRFVIHHSLPKSIENYYQASARILLRMTKQKNK 418 (695)
T ss_pred -CccccccccccCccccccccccccccceEEEEEEeeecccCCC-CCeeEEEecccchhHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999 99999999999999999 99999999999999999999
Q ss_pred ----------------------------HhcccccCCCCceEEEEeCcchHHHHHHH
Q 008461 220 ----------------------------RVGRTARYNSGGRSVLFLTPTEMKMLEKL 248 (564)
Q Consensus 220 ----------------------------RiGRtgR~g~~G~~il~l~~~e~~~l~~L 248 (564)
..||+||.+....||+++.-.+...+..|
T Consensus 419 sdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssm 475 (695)
T KOG0353|consen 419 SDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSM 475 (695)
T ss_pred ccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHH
Confidence 77999999999999999988776644444
No 93
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.71 E-value=7.1e-17 Score=184.39 Aligned_cols=226 Identities=21% Similarity=0.338 Sum_probs=168.1
Q ss_pred cccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccC-ccCcccHH-HHHHHHHHhCCCCCcEEEEeccCChhHHHH
Q 008461 4 EHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGFK-KALNAIVSQLPKHRQTFLFSATQTKSVQDL 81 (564)
Q Consensus 4 ~r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD-~lld~gf~-~~l~~Il~~lp~~~Q~llfSATl~~~v~~l 81 (564)
..-....|-++|.|.|++.+.+.+. ++.+++||||||| |-++..|. ..+..++...+.+..+|++|||+.. ..+
T Consensus 135 ~~s~~Trik~mTdGiLlrei~~D~~--Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~--~rf 210 (845)
T COG1643 135 KVSPRTRIKVMTDGILLREIQNDPL--LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDA--ERF 210 (845)
T ss_pred cCCCCceeEEeccHHHHHHHhhCcc--cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCH--HHH
Confidence 3344678999999999999988754 5899999999999 66666655 3455667777778999999999885 345
Q ss_pred HHHhcCCCCcccccccccccCCccceeEEEEcC-ccc-HHHHHHHHHH---HcCCCcEEEEeCChHHHHHHHHHHHh--h
Q 008461 82 ARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQ-KLDMLWSFIK---AHLNSKILVFLTSCKQVKYVFEAFKK--L 154 (564)
Q Consensus 82 ~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~-~~~-Kl~~L~~~L~---~~~~~k~IVF~~t~k~v~~l~e~L~~--l 154 (564)
...+ .+...+.+.... -| ++.+|.... .+. -...+...+. ....+-+|||++-....+.+++.|.. +
T Consensus 211 s~~f-~~apvi~i~GR~---fP--Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l 284 (845)
T COG1643 211 SAYF-GNAPVIEIEGRT---YP--VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAEL 284 (845)
T ss_pred HHHc-CCCCEEEecCCc---cc--eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccc
Confidence 5544 433334333221 12 333442222 222 2233333333 33478999999999999999999987 3
Q ss_pred CCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCC------------------CCCHh
Q 008461 155 RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC------------------PEDVA 215 (564)
Q Consensus 155 ~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~------------------P~s~~ 215 (564)
.+.+.++++||.|+..+...+|+--.. ..+|++||++++.+|.| |+|.+||.-+. |-|-+
T Consensus 285 ~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI-~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqA 363 (845)
T COG1643 285 GDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTI-PGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKA 363 (845)
T ss_pred cCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceee-CCeEEEecCCcccccccccccCceeeeEEEechh
Confidence 256889999999999999987766666 45699999999999999 99999998654 35788
Q ss_pred hHHHHhcccccCCCCceEEEEeCcch
Q 008461 216 SYIHRVGRTARYNSGGRSVLFLTPTE 241 (564)
Q Consensus 216 ~YiqRiGRtgR~g~~G~~il~l~~~e 241 (564)
+..||.||+||.+ .|.|+-+++..+
T Consensus 364 sA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 364 SADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred hhhhhccccccCC-CceEEEecCHHH
Confidence 9999999999985 899999998643
No 94
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1.9e-16 Score=180.11 Aligned_cols=127 Identities=23% Similarity=0.233 Sum_probs=112.1
Q ss_pred EcCcccHHHHHHHHHHH--cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEE
Q 008461 112 IVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 188 (564)
Q Consensus 112 ~~~~~~Kl~~L~~~L~~--~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVa 188 (564)
......|..++...+.. ..+.|+||||+|...++.++..|... |+++..+||+ +.+|...+..|.. ...|+||
T Consensus 409 ~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~--gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIA 484 (830)
T PRK12904 409 YKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA--GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIA 484 (830)
T ss_pred EECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--CCceEeccCc--hHHHHHHHHHhcCCCceEEEe
Confidence 34556789999998866 55789999999999999999999985 9999999995 8899999999999 9999999
Q ss_pred ecccccCCCcCCC-------------------------------------CcEEEEcCCCCCHhhHHHHhcccccCCCCc
Q 008461 189 TDVASRGLDFNKA-------------------------------------VDWVVQVDCPEDVASYIHRVGRTARYNSGG 231 (564)
Q Consensus 189 Tdv~arGLD~pp~-------------------------------------V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G 231 (564)
||+|+||+||+-+ ==+||-...|.|..--.|-.|||||.|.+|
T Consensus 485 TNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpG 564 (830)
T PRK12904 485 TNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPG 564 (830)
T ss_pred cccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCC
Confidence 9999999999332 118899999999999999999999999999
Q ss_pred eEEEEeCcchH
Q 008461 232 RSVLFLTPTEM 242 (564)
Q Consensus 232 ~~il~l~~~e~ 242 (564)
.+-+|++-.|.
T Consensus 565 ss~f~lSleD~ 575 (830)
T PRK12904 565 SSRFYLSLEDD 575 (830)
T ss_pred ceeEEEEcCcH
Confidence 99999987654
No 95
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.71 E-value=2.5e-16 Score=181.42 Aligned_cols=216 Identities=18% Similarity=0.310 Sum_probs=174.4
Q ss_pred ccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 5 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 5 r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
..|.++|||||- +|+ +..+.+.+|.+|||||=|| |+-.-..-+..+..+.-++-+|||+-+....++-.
T Consensus 694 a~G~vDIvIGTH-rLL-----~kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~ 762 (1139)
T COG1197 694 AEGKVDIVIGTH-RLL-----SKDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLS 762 (1139)
T ss_pred hcCCccEEEech-Hhh-----CCCcEEecCCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHh
Confidence 347899999997 444 2367789999999999999 55555566666667888999999999888888888
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCccc--HHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeee
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQ--KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC 162 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~--Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~ 162 (564)
++++-..|.+.+.+- .| -+.|+ .+... --.++..-|. .++++-..+|..+..+.+.+.|+.+.|...+.+
T Consensus 763 GiRdlSvI~TPP~~R--~p---V~T~V-~~~d~~~ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~v 834 (1139)
T COG1197 763 GIRDLSVIATPPEDR--LP---VKTFV-SEYDDLLIREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAV 834 (1139)
T ss_pred cchhhhhccCCCCCC--cc---eEEEE-ecCChHHHHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEE
Confidence 888887775543321 11 22333 22222 1223333332 268888889999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC-CHhhHHHHhcccccCCCCceEEEEeCcc
Q 008461 163 LYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGGRSVLFLTPT 240 (564)
Q Consensus 163 lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~-s~~~YiqRiGRtgR~g~~G~~il~l~~~ 240 (564)
.||.|+..+-..++..|-+ ..+|||||.+++-|||| |+++.+|.-+.-. ..++..|..||+||.++.|.|++++.+.
T Consensus 835 aHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDI-PnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 835 AHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDI-PNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred eecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCC-CCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 9999999999999999999 99999999999999999 8999999887754 8999999999999999999999999864
No 96
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.69 E-value=2.7e-15 Score=152.43 Aligned_cols=228 Identities=20% Similarity=0.227 Sum_probs=159.0
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhcC
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK 87 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l~ 87 (564)
...++|||...|+..- +.++++|+||+|.+.-..-.....+.-.......-++++|||.|+.+..-+...-.
T Consensus 185 r~plvVaTtHQLlrFk--------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g~~ 256 (441)
T COG4098 185 RAPLVVATTHQLLRFK--------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKILKGNL 256 (441)
T ss_pred cccEEEEehHHHHHHH--------hhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChHHHHHHhhhCCe
Confidence 3679999999987543 34679999999986432212222333344455678999999999876654433222
Q ss_pred CCCcccccccccccCCccceeEEEEcCcccHH------HHHHHHHHHcC--CCcEEEEeCChHHHHHHHHHHHhhCCCCC
Q 008461 88 DPQYLSVHEESVTATPNRLQQTAMIVPLEQKL------DMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIP 159 (564)
Q Consensus 88 ~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl------~~L~~~L~~~~--~~k~IVF~~t~k~v~~l~e~L~~l~~gi~ 159 (564)
.+..+ ... ....|-.+..+...-+...++ ..|...|+.+. +.|++||+++....+.++..|+...|...
T Consensus 257 ~~~kl--p~R-fH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~ 333 (441)
T COG4098 257 RILKL--PAR-FHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKET 333 (441)
T ss_pred eEeec--chh-hcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccc
Confidence 22211 111 111122222233333333333 26777776654 58999999999999999999987778888
Q ss_pred eeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCC--CCHhhHHHHhcccccCCC--CceEE
Q 008461 160 LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCP--EDVASYIHRVGRTARYNS--GGRSV 234 (564)
Q Consensus 160 v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P--~s~~~YiqRiGRtgR~g~--~G~~i 234 (564)
+...|+. ...|.+..+.|++ ...+||+|.+++||+.| |.|+.+|.-.-- .+.+..+|.+||+||.-. .|.++
T Consensus 334 i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTf-p~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~ 410 (441)
T COG4098 334 IASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTF-PNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVL 410 (441)
T ss_pred eeeeecc--CccHHHHHHHHHcCceEEEEEeehhhccccc-ccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEE
Confidence 8889984 5578999999999 99999999999999999 899987754333 588999999999999754 58888
Q ss_pred EEeCcchHHHHHHHH
Q 008461 235 LFLTPTEMKMLEKLR 249 (564)
Q Consensus 235 l~l~~~e~~~l~~L~ 249 (564)
.|-..-...|....+
T Consensus 411 FFH~G~skaM~~A~k 425 (441)
T COG4098 411 FFHYGKSKAMKQARK 425 (441)
T ss_pred EEeccchHHHHHHHH
Confidence 777766665655543
No 97
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.68 E-value=3.5e-16 Score=178.13 Aligned_cols=246 Identities=19% Similarity=0.258 Sum_probs=175.9
Q ss_pred ccCCCcEEEEcHHHHHHHHhcCCCC--CCCCcceEEEeccCccCcccHHHHHHHHHHhC-------CCCCcEEEEeccCC
Q 008461 5 HVNELNILVCTPGRLLQHMDETPNF--DCSQLQILILDEADRILDVGFKKALNAIVSQL-------PKHRQTFLFSATQT 75 (564)
Q Consensus 5 r~~~~~ILV~TPgrLl~~L~~~~~~--~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l-------p~~~Q~llfSATl~ 75 (564)
.+.+..||||||+.. +.+.+...- ..+-++++|+||.|.+-|. .++.+..|+... ....+.+++|||+|
T Consensus 408 qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLP 485 (1674)
T KOG0951|consen 408 QIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLP 485 (1674)
T ss_pred hhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhcccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCC
Confidence 456789999999987 566554211 1345689999999976554 577777776553 23678999999999
Q ss_pred hhHHHHHHHhcCCCCcccccccccccCCccceeEEEEcCcccHHH-------HHH-HHHHHcCCCcEEEEeCChHHHHHH
Q 008461 76 KSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD-------MLW-SFIKAHLNSKILVFLTSCKQVKYV 147 (564)
Q Consensus 76 ~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~-------~L~-~~L~~~~~~k~IVF~~t~k~v~~l 147 (564)
+- .+.+.....+|.-+.....+ -.|..+.|.|+-+.....+. +.+ ..+....+.++|||+.+++.+-..
T Consensus 486 Ny-~DV~~Fl~v~~~glf~fd~s--yRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~kt 562 (1674)
T KOG0951|consen 486 NY-EDVASFLRVDPEGLFYFDSS--YRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKT 562 (1674)
T ss_pred ch-hhhHHHhccCcccccccCcc--cCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHH
Confidence 85 45555444444322221122 23555777777665433222 222 344555578999999999888777
Q ss_pred HHHHHhhC-----------------------------------CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecc
Q 008461 148 FEAFKKLR-----------------------------------PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 191 (564)
Q Consensus 148 ~e~L~~l~-----------------------------------~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv 191 (564)
+..++... -...++++|+||+..+|..+.+.|.. ...|||+|-.
T Consensus 563 A~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstat 642 (1674)
T KOG0951|consen 563 ARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTAT 642 (1674)
T ss_pred HHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehh
Confidence 77665210 12347899999999999999999999 9999999999
Q ss_pred cccCCCcCCCCcEEEE-----cCC------CCCHhhHHHHhcccccCC--CCceEEEEeCcchHHHHHHHHHcCCCccc
Q 008461 192 ASRGLDFNKAVDWVVQ-----VDC------PEDVASYIHRVGRTARYN--SGGRSVLFLTPTEMKMLEKLREAKIPIHF 257 (564)
Q Consensus 192 ~arGLD~pp~V~~VI~-----~d~------P~s~~~YiqRiGRtgR~g--~~G~~il~l~~~e~~~l~~L~~~~i~i~~ 257 (564)
+++|+|+ | .+.||. ||+ +-++...+||.||+||.+ ..|.++++...++..+.-.+....+||+.
T Consensus 643 lawgvnl-p-ahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpies 719 (1674)
T KOG0951|consen 643 LAWGVNL-P-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIES 719 (1674)
T ss_pred hhhhcCC-C-cceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChH
Confidence 9999999 7 577776 333 348999999999999976 46888888888888877777676777654
No 98
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.68 E-value=1.1e-15 Score=176.13 Aligned_cols=228 Identities=17% Similarity=0.163 Sum_probs=171.7
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
+..+|+|+|.+.|..++..+ ...+..+..||+||+|.|.|...+..+..++-++|...|++++|||+|+....-.+...
T Consensus 204 ~~A~clvMTTEILRnMlyrg-~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~ 282 (1041)
T COG4581 204 PDAPCLVMTTEILRNMLYRG-SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQR 282 (1041)
T ss_pred CCCceEEeeHHHHHHHhccC-cccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHh
Confidence 46889999999998888877 56789999999999999999999999999999999999999999999998766555543
Q ss_pred --CCCCcccccccccccCCccceeEEEEc-------CcccH---------------------------------------
Q 008461 87 --KDPQYLSVHEESVTATPNRLQQTAMIV-------PLEQK--------------------------------------- 118 (564)
Q Consensus 87 --~~p~~i~v~~~~~~~~p~~l~q~~~~~-------~~~~K--------------------------------------- 118 (564)
..|.++..... .|.-+.++++.- +...+
T Consensus 283 ~~~~~~~vv~t~~----RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~ 358 (1041)
T COG4581 283 VHSQPIHVVSTEH----RPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALR 358 (1041)
T ss_pred ccCCCeEEEeecC----CCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccC
Confidence 23444433222 233455554432 11110
Q ss_pred --------HHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhC--------------------------CCC------
Q 008461 119 --------LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR--------------------------PGI------ 158 (564)
Q Consensus 119 --------l~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~--------------------------~gi------ 158 (564)
...+...+.....-|+|||+-|++.|+.....+..+- .++
T Consensus 359 ~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~ 438 (1041)
T COG4581 359 GSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILE 438 (1041)
T ss_pred CcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHH
Confidence 0112222333335689999999999988876664210 011
Q ss_pred -------CeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCC---------CCHhhHHHHh
Q 008461 159 -------PLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCP---------EDVASYIHRV 221 (564)
Q Consensus 159 -------~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P---------~s~~~YiqRi 221 (564)
.+.++|+||=+..|..+...|.. -..|+|||.+++.|+|. | +..||.+..- -++..|+|+.
T Consensus 439 ~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNm-P-artvv~~~l~K~dG~~~r~L~~gEy~Qms 516 (1041)
T COG4581 439 ISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINM-P-ARTVVFTSLSKFDGNGHRWLSPGEYTQMS 516 (1041)
T ss_pred HHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCC-c-ccceeeeeeEEecCCceeecChhHHHHhh
Confidence 14589999999999999999999 89999999999999999 7 7888887653 4899999999
Q ss_pred cccccCCC--CceEEEEeCcch
Q 008461 222 GRTARYNS--GGRSVLFLTPTE 241 (564)
Q Consensus 222 GRtgR~g~--~G~~il~l~~~e 241 (564)
||+||.|- .|.+|++-.+..
T Consensus 517 GRAGRRGlD~~G~vI~~~~~~~ 538 (1041)
T COG4581 517 GRAGRRGLDVLGTVIVIEPPFE 538 (1041)
T ss_pred hhhccccccccceEEEecCCCC
Confidence 99999995 688888855543
No 99
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.67 E-value=1.3e-15 Score=166.10 Aligned_cols=223 Identities=22% Similarity=0.351 Sum_probs=161.5
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccC-ccCccc-HHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVG-FKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD-~lld~g-f~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
....|.+.|-|.|+..+...+.+ +..++||||||| |-+.-. .-..|..|+..-+ ...++++|||+... .+...
T Consensus 139 ~~TrikymTDG~LLRE~l~Dp~L--skYsvIIlDEAHERsl~TDiLlGlLKki~~~R~-~LklIimSATlda~--kfS~y 213 (674)
T KOG0922|consen 139 KDTRIKYMTDGMLLREILKDPLL--SKYSVIILDEAHERSLHTDILLGLLKKILKKRP-DLKLIIMSATLDAE--KFSEY 213 (674)
T ss_pred CceeEEEecchHHHHHHhcCCcc--ccccEEEEechhhhhhHHHHHHHHHHHHHhcCC-CceEEEEeeeecHH--HHHHH
Confidence 45789999999999999887655 899999999999 433221 1223444444433 57899999998843 34443
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCcccHH----HHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCC--
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKL----DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGI-- 158 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl----~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi-- 158 (564)
+.+...+.+.-.. --++.+|...+..+-+ .+++.+-....++-+|||.+....++.+++.|.+.....
T Consensus 214 -F~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~ 287 (674)
T KOG0922|consen 214 -FNNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPE 287 (674)
T ss_pred -hcCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccc
Confidence 3443333332111 1134455544443333 333444444557899999999999999999998763222
Q ss_pred ----CeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCC------------------CCCHh
Q 008461 159 ----PLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC------------------PEDVA 215 (564)
Q Consensus 159 ----~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~------------------P~s~~ 215 (564)
-++++||.|+.++...++..-.. ..+|+|||++++..|.| |+|.+||.-+. |-|-+
T Consensus 288 ~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI-~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISka 366 (674)
T KOG0922|consen 288 DCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTI-DGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKA 366 (674)
T ss_pred cCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEe-cceEEEEcCCceEEEeeccccCccceeEEechHH
Confidence 25789999999999999887776 77899999999999999 99999998654 55888
Q ss_pred hHHHHhcccccCCCCceEEEEeCcchH
Q 008461 216 SYIHRVGRTARYNSGGRSVLFLTPTEM 242 (564)
Q Consensus 216 ~YiqRiGRtgR~g~~G~~il~l~~~e~ 242 (564)
+-.||+|||||.| +|+|+-+++.++.
T Consensus 367 sA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 367 SANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred HHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 9999999999986 8999999998654
No 100
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=1.1e-15 Score=174.14 Aligned_cols=128 Identities=17% Similarity=0.175 Sum_probs=110.1
Q ss_pred EcCcccHHHHHHHHHHH--cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEe
Q 008461 112 IVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCT 189 (564)
Q Consensus 112 ~~~~~~Kl~~L~~~L~~--~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaT 189 (564)
......|..++...+.. ..+.|+||||+|...++.++..|... |++...|||++.+.+|..+.+.|+.. .|+|||
T Consensus 423 ~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~--gi~h~vLnak~~q~Ea~iia~Ag~~G-~VtIAT 499 (896)
T PRK13104 423 YLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKE--NIKHQVLNAKFHEKEAQIIAEAGRPG-AVTIAT 499 (896)
T ss_pred EcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc--CCCeEeecCCCChHHHHHHHhCCCCC-cEEEec
Confidence 34456688888777743 34889999999999999999999985 99999999999999999999999985 499999
Q ss_pred cccccCCCcCCC-------------------------------------CcEEEEcCCCCCHhhHHHHhcccccCCCCce
Q 008461 190 DVASRGLDFNKA-------------------------------------VDWVVQVDCPEDVASYIHRVGRTARYNSGGR 232 (564)
Q Consensus 190 dv~arGLD~pp~-------------------------------------V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~ 232 (564)
|+|+||+||.-+ ==+||-...+.|..-=.|-.||+||.|.+|.
T Consensus 500 NmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGs 579 (896)
T PRK13104 500 NMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGS 579 (896)
T ss_pred cCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCc
Confidence 999999999311 1178888899999999999999999999999
Q ss_pred EEEEeCcchH
Q 008461 233 SVLFLTPTEM 242 (564)
Q Consensus 233 ~il~l~~~e~ 242 (564)
+-+|++-.|.
T Consensus 580 s~f~lSleD~ 589 (896)
T PRK13104 580 SRFYLSLEDN 589 (896)
T ss_pred eEEEEEcCcH
Confidence 9999986654
No 101
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.66 E-value=1.1e-15 Score=166.37 Aligned_cols=207 Identities=20% Similarity=0.342 Sum_probs=146.0
Q ss_pred cEEEEcHHHHHHH--HhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHH-HHHHHhc
Q 008461 10 NILVCTPGRLLQH--MDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQ-DLARLSL 86 (564)
Q Consensus 10 ~ILV~TPgrLl~~--L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~-~l~~~~l 86 (564)
.|.|+|-..+... +. .+..+...+||+||||++....|...+..+....+ ++++|||++.... .....+.
T Consensus 124 ~i~vat~qtl~~~~~l~---~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~----~LGLTATp~R~D~~~~~~l~~ 196 (442)
T COG1061 124 KVTVATVQTLARRQLLD---EFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP----RLGLTATPEREDGGRIGDLFD 196 (442)
T ss_pred cEEEEEhHHHhhhhhhh---hhcccccCEEEEEccccCCcHHHHHHHHhhhcccc----eeeeccCceeecCCchhHHHH
Confidence 5999999998764 22 23345789999999999988766655554444433 9999999774431 1111111
Q ss_pred -CCCCcccccccc----cccCCccceeEE------------------------------------EEcCcccHHHHHHHH
Q 008461 87 -KDPQYLSVHEES----VTATPNRLQQTA------------------------------------MIVPLEQKLDMLWSF 125 (564)
Q Consensus 87 -~~p~~i~v~~~~----~~~~p~~l~q~~------------------------------------~~~~~~~Kl~~L~~~ 125 (564)
..|..+...... ....|..+.... .......++..+...
T Consensus 197 ~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (442)
T COG1061 197 LIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGL 276 (442)
T ss_pred hcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHH
Confidence 112211111000 000111000000 011122344455555
Q ss_pred HHHc-CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCc
Q 008461 126 IKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVD 203 (564)
Q Consensus 126 L~~~-~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~ 203 (564)
+..+ ...+++||+++..++..++..|.. +++ +..+.|..++.+|..+++.|+. ...+||++.++..|+|+ |+++
T Consensus 277 ~~~~~~~~~~lif~~~~~~a~~i~~~~~~--~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDi-P~~~ 352 (442)
T COG1061 277 LLKHARGDKTLIFASDVEHAYEIAKLFLA--PGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDI-PDAD 352 (442)
T ss_pred HHHhcCCCcEEEEeccHHHHHHHHHHhcC--CCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecC-CCCc
Confidence 5555 367999999999999999999976 576 8899999999999999999999 99999999999999999 9999
Q ss_pred EEEEcCCCCCHhhHHHHhcccccC
Q 008461 204 WVVQVDCPEDVASYIHRVGRTARY 227 (564)
Q Consensus 204 ~VI~~d~P~s~~~YiqRiGRtgR~ 227 (564)
++|+..++.|...|+||+||.-|.
T Consensus 353 ~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 353 VLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EEEEeCCCCcHHHHHHHhhhhccC
Confidence 999999999999999999999993
No 102
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.66 E-value=1.3e-15 Score=170.94 Aligned_cols=238 Identities=21% Similarity=0.209 Sum_probs=159.5
Q ss_pred CCCcEEEEcHHHHHHHHhcC-CCCCCCCcceEEEeccCccCcccHHHHHHHHHHhC-----CCCCcEEEEeccCChhHHH
Q 008461 7 NELNILVCTPGRLLQHMDET-PNFDCSQLQILILDEADRILDVGFKKALNAIVSQL-----PKHRQTFLFSATQTKSVQD 80 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~-~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l-----p~~~Q~llfSATl~~~v~~ 80 (564)
....|.|||-++=.-.+... ..-++..+.+||+||-|.+.+.|.+..+..++..+ ....|+|++|||+++. ..
T Consensus 314 k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~-~l 392 (1008)
T KOG0950|consen 314 KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN-SL 392 (1008)
T ss_pred cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh-HH
Confidence 45789999998765333211 01245789999999999999999888888877642 2346799999999974 33
Q ss_pred HHHHhcCCCCcccccccccccCCccceeEEEEcC--ccc-HHHHHHHH-------------------HHHc--CCCcEEE
Q 008461 81 LARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP--LEQ-KLDMLWSF-------------------IKAH--LNSKILV 136 (564)
Q Consensus 81 l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~--~~~-Kl~~L~~~-------------------L~~~--~~~k~IV 136 (564)
+ ..++....|..-. .|..+..+..+-+ ... +...+..+ .... .+..+||
T Consensus 393 L-~~~L~A~~y~t~f------RPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lv 465 (1008)
T KOG0950|consen 393 L-QDWLDAFVYTTRF------RPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLV 465 (1008)
T ss_pred H-HHHhhhhheeccc------CcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEE
Confidence 3 3333322222100 0111110000000 000 22222211 1111 1457999
Q ss_pred EeCChHHHHHHHHHHHhhC-------------------------C-----------CCCeeeccCCCCHHHHHHHHHHHh
Q 008461 137 FLTSCKQVKYVFEAFKKLR-------------------------P-----------GIPLMCLYGRMKQDRRMAIYAQFC 180 (564)
Q Consensus 137 F~~t~k~v~~l~e~L~~l~-------------------------~-----------gi~v~~lHg~m~~~~R~~i~~~F~ 180 (564)
||++++.|+.++..+.... | ...+.++|.|++.++|..+...|+
T Consensus 466 fc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr 545 (1008)
T KOG0950|consen 466 FCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFR 545 (1008)
T ss_pred EcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHH
Confidence 9999999988876554321 1 234788999999999999999999
Q ss_pred c-cCCeEEEecccccCCCcCCCCcEEEEcCC----CCCHhhHHHHhcccccCCC--CceEEEEeCcchHHHHHHHHHcCC
Q 008461 181 E-KRSVLFCTDVASRGLDFNKAVDWVVQVDC----PEDVASYIHRVGRTARYNS--GGRSVLFLTPTEMKMLEKLREAKI 253 (564)
Q Consensus 181 ~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~----P~s~~~YiqRiGRtgR~g~--~G~~il~l~~~e~~~l~~L~~~~i 253 (564)
. ...|++||+.++.|+++ |+.+++|-.-. +.+.-+|.||+|||||+|- .|.+++++.+.+...+..|....+
T Consensus 546 ~g~i~vl~aTSTlaaGVNL-PArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~ 624 (1008)
T KOG0950|consen 546 EGNIFVLVATSTLAAGVNL-PARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPL 624 (1008)
T ss_pred hcCeEEEEecchhhccCcC-CcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccc
Confidence 9 89999999999999999 87666664322 2478899999999999985 699999999999886656655433
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.66 E-value=6.2e-16 Score=177.88 Aligned_cols=233 Identities=20% Similarity=0.273 Sum_probs=152.5
Q ss_pred CcEEEEcHHHHHHHHhcCCCCC-CC--CcceEEEeccCccCcccHHHHHHHHHHhCC-CCCcEEEEeccCChhHHHHHHH
Q 008461 9 LNILVCTPGRLLQHMDETPNFD-CS--QLQILILDEADRILDVGFKKALNAIVSQLP-KHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 9 ~~ILV~TPgrLl~~L~~~~~~~-~~--~L~~lVlDEAD~lld~gf~~~l~~Il~~lp-~~~Q~llfSATl~~~v~~l~~~ 84 (564)
..++++||-.++-.......+. +. -.+++||||+|.+.+..-...+.+++..+. -+..+|++|||+|+........
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~ 390 (733)
T COG1203 311 LALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKK 390 (733)
T ss_pred ccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHH
Confidence 4567777776654222222222 11 126899999998887642333333333332 2678999999999999987777
Q ss_pred hcCCCCccccccccccc-CCccceeEEEEcCcccH-HHHHHHHH--HHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCe
Q 008461 85 SLKDPQYLSVHEESVTA-TPNRLQQTAMIVPLEQK-LDMLWSFI--KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPL 160 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~-~p~~l~q~~~~~~~~~K-l~~L~~~L--~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v 160 (564)
.+.+...+......... .-..+.+.... ..... ...+...+ ....+.+++|.|||...|..+|..|+...+ ++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v 467 (733)
T COG1203 391 ALGKGREVVENAKFCPKEDEPGLKRKERV-DVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--KV 467 (733)
T ss_pred HHhcccceeccccccccccccccccccch-hhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC--CE
Confidence 66655554432110000 00001111000 00111 00111111 122368999999999999999999998643 79
Q ss_pred eeccCCCCHHHHHHHHHHHh----c-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCC--CCceE
Q 008461 161 MCLYGRMKQDRRMAIYAQFC----E-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN--SGGRS 233 (564)
Q Consensus 161 ~~lHg~m~~~~R~~i~~~F~----~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g--~~G~~ 233 (564)
+.+||++....|.+.+..+. . ...|+|||++++.|||+ +++|+| -=+..+++.|||+||++|.| ..|.+
T Consensus 468 ~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi--dfd~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~ 543 (733)
T COG1203 468 LLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI--DFDVLI--TELAPIDSLIQRAGRVNRHGKKENGKI 543 (733)
T ss_pred EEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc--ccCeee--ecCCCHHHHHHHHHHHhhcccccCCce
Confidence 99999999999999988765 3 67899999999999999 488888 44566999999999999999 57777
Q ss_pred EEEeCcchHHHHHHH
Q 008461 234 VLFLTPTEMKMLEKL 248 (564)
Q Consensus 234 il~l~~~e~~~l~~L 248 (564)
+++............
T Consensus 544 ~v~~~~~~~~~~~~~ 558 (733)
T COG1203 544 YVYNDEERGPYLKYS 558 (733)
T ss_pred eEeecccCCCchhhh
Confidence 777765554444443
No 104
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.66 E-value=2.7e-16 Score=129.61 Aligned_cols=72 Identities=32% Similarity=0.534 Sum_probs=70.2
Q ss_pred CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCC
Q 008461 156 PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN 228 (564)
Q Consensus 156 ~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g 228 (564)
+++.+..+||++++.+|..+++.|.. ...|||||+++++|||+ |.+++||++++|+++..|+|++||+||.|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~-~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDL-PDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTS-TTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccc-cccccccccccCCCHHHHHHHhhcCCCCC
Confidence 59999999999999999999999999 89999999999999999 89999999999999999999999999986
No 105
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.64 E-value=6.4e-15 Score=174.72 Aligned_cols=213 Identities=15% Similarity=0.233 Sum_probs=139.1
Q ss_pred CCcEEEEcHHHHHHHHhcC----CCCCCCCcceEEEeccCccCc---------cc------HHHHHHHHHHhCCCCCcEE
Q 008461 8 ELNILVCTPGRLLQHMDET----PNFDCSQLQILILDEADRILD---------VG------FKKALNAIVSQLPKHRQTF 68 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~----~~~~~~~L~~lVlDEAD~lld---------~g------f~~~l~~Il~~lp~~~Q~l 68 (564)
...|+|||...|...+... ..+.+..+++||+|||||... .+ +...+..++.++ +...|
T Consensus 511 ~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF--dA~~I 588 (1123)
T PRK11448 511 ETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF--DAVKI 588 (1123)
T ss_pred CCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhc--CccEE
Confidence 4689999999987665322 124568899999999999531 11 246778888876 36789
Q ss_pred EEeccCChhHHHHHHHhcCCCCcccccc----ccccc---CCcccee-----------------------EE--EEcCc-
Q 008461 69 LFSATQTKSVQDLARLSLKDPQYLSVHE----ESVTA---TPNRLQQ-----------------------TA--MIVPL- 115 (564)
Q Consensus 69 lfSATl~~~v~~l~~~~l~~p~~i~v~~----~~~~~---~p~~l~q-----------------------~~--~~~~~- 115 (564)
+||||+......+. ..|.+..... ..... .|..+.- .+ -..+.
T Consensus 589 GLTATP~r~t~~~F----G~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~ 664 (1123)
T PRK11448 589 GLTATPALHTTEIF----GEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDE 664 (1123)
T ss_pred EEecCCccchhHHh----CCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHH
Confidence 99999864332211 1222110000 00000 0000000 00 00000
Q ss_pred --------------ccHHHH----HHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhC----CCC---CeeeccCCCCHH
Q 008461 116 --------------EQKLDM----LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR----PGI---PLMCLYGRMKQD 170 (564)
Q Consensus 116 --------------~~Kl~~----L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~----~gi---~v~~lHg~m~~~ 170 (564)
+..... +...+....+.|+||||.++.+|+.+++.|...+ |+. .+..+||+++
T Consensus 665 ~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~-- 742 (1123)
T PRK11448 665 VDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID-- 742 (1123)
T ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--
Confidence 000111 2222222335799999999999999988876542 333 4667899876
Q ss_pred HHHHHHHHHhc-cC-CeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCC
Q 008461 171 RRMAIYAQFCE-KR-SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS 229 (564)
Q Consensus 171 ~R~~i~~~F~~-~~-~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~ 229 (564)
.+..++..|++ .. .|+|+++++++|+|+ |.|++||.+.+|.|...|+||+||+.|...
T Consensus 743 ~~~~li~~Fk~~~~p~IlVsvdmL~TG~Dv-P~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 743 KPDQLIRRFKNERLPNIVVTVDLLTTGIDV-PSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred chHHHHHHHhCCCCCeEEEEecccccCCCc-ccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 46789999998 54 699999999999999 899999999999999999999999999754
No 106
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.60 E-value=2.6e-14 Score=167.09 Aligned_cols=129 Identities=18% Similarity=0.225 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cC---CeEEEecc
Q 008461 118 KLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR---SVLFCTDV 191 (564)
Q Consensus 118 Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~---~VLVaTdv 191 (564)
|+..|..+|... .+.++|||+........|...|.. .|+....+||+++..+|..+++.|.. .. .+|++|.+
T Consensus 472 Kl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~--~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 472 KMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMY--RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred HHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHH--cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 444444444332 267999999999999999998876 48999999999999999999999976 32 47899999
Q ss_pred cccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCce--EEEEeCcc--hHHHHHHHH
Q 008461 192 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGR--SVLFLTPT--EMKMLEKLR 249 (564)
Q Consensus 192 ~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~--~il~l~~~--e~~~l~~L~ 249 (564)
++.|||+ ..+++||+||+||++..+.|++||+-|.|.... ++-|++.. |..++.+..
T Consensus 550 GGlGINL-t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~ 610 (1033)
T PLN03142 550 GGLGINL-ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAY 610 (1033)
T ss_pred cccCCch-hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHH
Confidence 9999999 899999999999999999999999999998654 44555554 333565543
No 107
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.57 E-value=6.9e-14 Score=151.62 Aligned_cols=231 Identities=21% Similarity=0.284 Sum_probs=163.9
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccC-ccCcccHH-HHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGFK-KALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD-~lld~gf~-~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
...-|=++|-|.|+.-+... .++.+.+++|+|||| |-+.-... ..+..|. .+.++..+++.|||+... .+...
T Consensus 354 ekTvlKYMTDGmLlREfL~e--pdLasYSViiiDEAHERTL~TDILfgLvKDIa-r~RpdLKllIsSAT~DAe--kFS~f 428 (902)
T KOG0923|consen 354 EKTVLKYMTDGMLLREFLSE--PDLASYSVIIVDEAHERTLHTDILFGLVKDIA-RFRPDLKLLISSATMDAE--KFSAF 428 (902)
T ss_pred cceeeeeecchhHHHHHhcc--ccccceeEEEeehhhhhhhhhhHHHHHHHHHH-hhCCcceEEeeccccCHH--HHHHh
Confidence 34557899999999887765 456899999999999 55543322 2233333 344588999999998753 33333
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHH-HHc---CCCcEEEEeCChHHHHHHHHHHHhh------
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFI-KAH---LNSKILVFLTSCKQVKYVFEAFKKL------ 154 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L-~~~---~~~k~IVF~~t~k~v~~l~e~L~~l------ 154 (564)
+-.-|.+. +... .. .+.-+|..+|..+-+++.+.-+ +-| +.+-+|||+.-....+.+.+.|..+
T Consensus 429 FDdapIF~-iPGR---Ry--PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGs 502 (902)
T KOG0923|consen 429 FDDAPIFR-IPGR---RY--PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGS 502 (902)
T ss_pred ccCCcEEe-ccCc---cc--ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhcc
Confidence 33334333 3221 11 2455677777777666554433 323 3678999998887777666666543
Q ss_pred -CCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCC------------------CCCH
Q 008461 155 -RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC------------------PEDV 214 (564)
Q Consensus 155 -~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~------------------P~s~ 214 (564)
.+.+-+.++|+.++......|++---. -.+|++||++|+..|.| ++|.+||.-++ |.|-
T Consensus 503 ki~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTI-dgI~yViDpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 503 KIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTI-DGIKYVIDPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred ccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceee-cCeEEEecCccccccCcCCCcCceeEEEeeech
Confidence 245568899999999999999877776 67899999999999999 99999997554 5578
Q ss_pred hhHHHHhcccccCCCCceEEEEeCcchHHHHHHHHHcC
Q 008461 215 ASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAK 252 (564)
Q Consensus 215 ~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~~ 252 (564)
++-.||+||+||.| +|+|+-+++... +...|+...
T Consensus 582 AsA~QRaGRAGRtg-PGKCfRLYt~~a--Y~~eLE~~t 616 (902)
T KOG0923|consen 582 ASANQRAGRAGRTG-PGKCFRLYTAWA--YEHELEEMT 616 (902)
T ss_pred hhhhhhccccCCCC-CCceEEeechhh--hhhhhccCC
Confidence 89999999999997 899999998642 344444433
No 108
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=99.54 E-value=1.2e-14 Score=116.44 Aligned_cols=64 Identities=33% Similarity=0.558 Sum_probs=61.1
Q ss_pred hHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcc-cccccccccCCCHHHHHHhcCCCCCCcccc
Q 008461 267 PVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ-KDKEVFDVTKLSIDEFSASLGLPMTPKIRF 330 (564)
Q Consensus 267 ~i~~~l~~~~~~~~~l~~~a~~af~sy~rs~~~~-~~k~if~~~~l~l~~~A~s~GL~~~P~i~~ 330 (564)
+|+.+++.++.++++++++|++||+||+|+|+.+ .++.||++++||++++|.||||..+|+|+|
T Consensus 1 ~iq~~l~~~~~~d~~l~~lA~~Af~SyvraY~~~~~~k~iF~~~~L~l~~~A~sfGL~~~P~v~~ 65 (65)
T PF13959_consen 1 NIQQKLEKLVAKDRELKELAQKAFVSYVRAYASHKELKDIFNVKKLDLGHLAKSFGLLEAPKVRE 65 (65)
T ss_pred CHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhCCcccCCHHHHHHHcCCCCCCCCCC
Confidence 3678999999999999999999999999999987 999999999999999999999999999986
No 109
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.51 E-value=4.3e-14 Score=115.85 Aligned_cols=80 Identities=44% Similarity=0.624 Sum_probs=74.5
Q ss_pred HHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhccc
Q 008461 146 YVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRT 224 (564)
Q Consensus 146 ~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRt 224 (564)
.+++.|... ++.+..+||++++.+|..++..|.. ...|||+|+++++|+|+ |.+++||.+++|++...|+|++||+
T Consensus 2 ~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~-~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKEL--GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDL-PGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHC--CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcCh-hcCCEEEEeCCCCCHHHHHHhhccc
Confidence 456677664 8899999999999999999999999 88999999999999999 8899999999999999999999999
Q ss_pred ccCC
Q 008461 225 ARYN 228 (564)
Q Consensus 225 gR~g 228 (564)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9986
No 110
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.50 E-value=4.1e-13 Score=143.29 Aligned_cols=171 Identities=24% Similarity=0.292 Sum_probs=132.0
Q ss_pred CCcEEEEeccCChhHHHHHHHhcCCCCcccccccccccCCcc-ceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCC
Q 008461 64 HRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNR-LQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTS 140 (564)
Q Consensus 64 ~~Q~llfSATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~-l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t 140 (564)
..|++++|||+.+.-..... ..++.-. ..|.. +.-.+.+-|....++-|++-|+.. .+.+++|-+-|
T Consensus 386 ~~q~i~VSATPg~~E~e~s~-----~~vveQi-----IRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLT 455 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG-----GNVVEQI-----IRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLT 455 (663)
T ss_pred cCCEEEEECCCChHHHHhcc-----CceeEEe-----ecCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeeh
Confidence 36999999998765322211 1111000 01111 122223445666778888777653 37899999999
Q ss_pred hHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCC-----CCCH
Q 008461 141 CKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC-----PEDV 214 (564)
Q Consensus 141 ~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~-----P~s~ 214 (564)
++.++.|.++|..+ |+.+.++|++...-+|.+++...+. ..+|||.-+++-.|||+ |.|.+|..+|. ..|.
T Consensus 456 KkmAEdLT~Yl~e~--gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDi-PEVsLVAIlDADKeGFLRse 532 (663)
T COG0556 456 KKMAEDLTEYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDL-PEVSLVAILDADKEGFLRSE 532 (663)
T ss_pred HHHHHHHHHHHHhc--CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCC-cceeEEEEeecCcccccccc
Confidence 99999999999996 9999999999999999999999999 99999999999999999 89999999986 4699
Q ss_pred hhHHHHhcccccCCCCceEEEEeCcchHHHHHHH
Q 008461 215 ASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248 (564)
Q Consensus 215 ~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L 248 (564)
.+.||-+|||+|. -.|.+|++...-...|-+.+
T Consensus 533 ~SLIQtIGRAARN-~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 533 RSLIQTIGRAARN-VNGKVILYADKITDSMQKAI 565 (663)
T ss_pred chHHHHHHHHhhc-cCCeEEEEchhhhHHHHHHH
Confidence 9999999999997 57999998876544444444
No 111
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.50 E-value=2.4e-13 Score=155.38 Aligned_cols=234 Identities=19% Similarity=0.274 Sum_probs=160.8
Q ss_pred ccccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccC-ccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHH
Q 008461 3 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDL 81 (564)
Q Consensus 3 k~r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD-~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l 81 (564)
+.+-....+++||.|.|++.|...+ .+.++..||+||+| |=++..|--.+...+-...+..+++|+|||+.. ++
T Consensus 259 ~~~s~~t~L~fcTtGvLLr~L~~~~--~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~da---e~ 333 (924)
T KOG0920|consen 259 SKRSRETRLLFCTTGVLLRRLQSDP--TLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDA---EL 333 (924)
T ss_pred cccCCceeEEEecHHHHHHHhccCc--ccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecch---HH
Confidence 3444567899999999999998754 45899999999999 555655555444444444468999999999883 23
Q ss_pred HHHhcCCCCcccccccccc-----------cC---CccceeE------------EEEcCcccHHHHHHHHHH----HcCC
Q 008461 82 ARLSLKDPQYLSVHEESVT-----------AT---PNRLQQT------------AMIVPLEQKLDMLWSFIK----AHLN 131 (564)
Q Consensus 82 ~~~~l~~p~~i~v~~~~~~-----------~~---p~~l~q~------------~~~~~~~~Kl~~L~~~L~----~~~~ 131 (564)
.+.+..+...+.+...... .+ .....+. .-....+-..+.+..++. ....
T Consensus 334 fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~ 413 (924)
T KOG0920|consen 334 FSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFE 413 (924)
T ss_pred HHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCC
Confidence 3334433333322111000 00 0000000 000111223333443332 2236
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhC---C--CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEE
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLR---P--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWV 205 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~---~--gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~V 205 (564)
+.+|||.+.......+++.|.... + .+-+.++|+.|+..+...++..-.. ..+|++||++|+..|-| ++|-+|
T Consensus 414 GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITI-dDVvyV 492 (924)
T KOG0920|consen 414 GAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITI-DDVVYV 492 (924)
T ss_pred ceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccc-cCeEEE
Confidence 899999999999999999986532 2 2568899999999999999888877 78999999999999999 889999
Q ss_pred EEcCCC------------------CCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 206 VQVDCP------------------EDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 206 I~~d~P------------------~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
|..+.- -+...-.||.|||||. ..|.|+-+++.....
T Consensus 493 IDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 493 IDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred EecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 985531 2667888999999998 689999999876443
No 112
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.46 E-value=5.6e-13 Score=144.89 Aligned_cols=221 Identities=21% Similarity=0.322 Sum_probs=153.4
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccC-ccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD-~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
..-|=+.|-|.||+-.... -.+...++||+|||| |-+.....--+...+-.-..+..+|..|||+.. ..+...+.
T Consensus 445 ~T~IkymTDGiLLrEsL~d--~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a--~kf~nfFg 520 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLKD--RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDA--QKFSNFFG 520 (1042)
T ss_pred ceeEEEeccchHHHHHhhh--hhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccH--HHHHHHhC
Confidence 4557889999998765443 246788999999999 544433222222222223347899999999874 56777766
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHH-HHHHc---CCCcEEEEeCChHHHHHHHHHHHh----h--CC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS-FIKAH---LNSKILVFLTSCKQVKYVFEAFKK----L--RP 156 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~-~L~~~---~~~k~IVF~~t~k~v~~l~e~L~~----l--~~ 156 (564)
.-|.+..-. . ..| ++..|...+.++-+.+... .+.-| ..+-+|||..-...++-.+..+.. + .|
T Consensus 521 n~p~f~IpG-R---TyP--V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~ 594 (1042)
T KOG0924|consen 521 NCPQFTIPG-R---TYP--VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP 594 (1042)
T ss_pred CCceeeecC-C---ccc--eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC
Confidence 566543211 1 112 3344555555544443332 22222 357799999876666555554433 2 14
Q ss_pred --CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCC------------------CCCHh
Q 008461 157 --GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC------------------PEDVA 215 (564)
Q Consensus 157 --gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~------------------P~s~~ 215 (564)
++.|+.+++.|++.-...++..-.. ..+|+|||++|+..|.+ |+|.+||..+. |-|-+
T Consensus 595 ~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi-~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 595 TTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTI-PGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred CCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceee-cceEEEEecCceeeeecccccccceeEEEechhc
Confidence 6789999999999999998887777 78899999999999999 99999998664 56888
Q ss_pred hHHHHhcccccCCCCceEEEEeCcc
Q 008461 216 SYIHRVGRTARYNSGGRSVLFLTPT 240 (564)
Q Consensus 216 ~YiqRiGRtgR~g~~G~~il~l~~~ 240 (564)
.-.||+|||||.| +|.|+-+++..
T Consensus 674 nA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 674 NADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred cchhhccccCCCC-Ccceeeehhhh
Confidence 8999999999986 89999999874
No 113
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.40 E-value=7.4e-12 Score=141.69 Aligned_cols=237 Identities=19% Similarity=0.280 Sum_probs=160.3
Q ss_pred CcccccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccC---cccHHHHHH--HHHHhCCCCCcEEEEeccCC
Q 008461 1 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL---DVGFKKALN--AIVSQLPKHRQTFLFSATQT 75 (564)
Q Consensus 1 ~Ek~r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~ll---d~gf~~~l~--~Il~~lp~~~Q~llfSATl~ 75 (564)
|.+.+.+...|+|||-..|. ..+.+|.+||+||=|--. +.+.+...+ +++..--.+.++||-|||.+
T Consensus 289 W~~~~~G~~~vVIGtRSAlF--------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 289 WRRARRGEARVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred HHHHhcCCceEEEEechhhc--------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC
Confidence 45666788999999998773 568999999999999533 122222222 22333334789999999955
Q ss_pred hhHHHHHHHhcCCCCcccccccccccCCccceeEEEEcCc-ccHH-----HHHHHHHHHcC--CCcEEEEeCCh------
Q 008461 76 KSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPL-EQKL-----DMLWSFIKAHL--NSKILVFLTSC------ 141 (564)
Q Consensus 76 ~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~-~~Kl-----~~L~~~L~~~~--~~k~IVF~~t~------ 141 (564)
++...+..-.....+.+......+.+..+. ++.... .... ..|+..|+.+. +.++|+|+|.+
T Consensus 361 --LES~~~~~~g~y~~~~L~~R~~~a~~p~v~--iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l 436 (730)
T COG1198 361 --LESYANAESGKYKLLRLTNRAGRARLPRVE--IIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLL 436 (730)
T ss_pred --HHHHHhhhcCceEEEEccccccccCCCcce--EEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCcccee
Confidence 444444322222333332222222222222 222221 1111 45666665443 67888886551
Q ss_pred --H----------------------------------------------------HHHHHHHHHHhhCCCCCeeeccCCC
Q 008461 142 --K----------------------------------------------------QVKYVFEAFKKLRPGIPLMCLYGRM 167 (564)
Q Consensus 142 --k----------------------------------------------------~v~~l~e~L~~l~~gi~v~~lHg~m 167 (564)
. -++.+.+.|..++|+.++..+-++.
T Consensus 437 ~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dt 516 (730)
T COG1198 437 LCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDT 516 (730)
T ss_pred ecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEcccc
Confidence 1 2466678888888999999999887
Q ss_pred CHHH--HHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC------------CHhhHHHHhcccccCCCCce
Q 008461 168 KQDR--RMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE------------DVASYIHRVGRTARYNSGGR 232 (564)
Q Consensus 168 ~~~~--R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~------------s~~~YiqRiGRtgR~g~~G~ 232 (564)
.... -...+..|.+ +.+|||.|.+++.|.|| |+|++|...|.-. ....|.|-+||+||.+..|.
T Consensus 517 t~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~f-p~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~ 595 (730)
T COG1198 517 TRRKGALEDLLDQFANGEADILIGTQMIAKGHDF-PNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGE 595 (730)
T ss_pred ccchhhHHHHHHHHhCCCCCeeecchhhhcCCCc-ccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCe
Confidence 6543 4577999999 99999999999999999 9999998877532 46688999999999999999
Q ss_pred EEEEeCcchHHHHHHHHH
Q 008461 233 SVLFLTPTEMKMLEKLRE 250 (564)
Q Consensus 233 ~il~l~~~e~~~l~~L~~ 250 (564)
+++-....+...+..+..
T Consensus 596 VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 596 VVIQTYNPDHPAIQALKR 613 (730)
T ss_pred EEEEeCCCCcHHHHHHHh
Confidence 999988877766666554
No 114
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=6.2e-12 Score=143.56 Aligned_cols=201 Identities=16% Similarity=0.188 Sum_probs=146.6
Q ss_pred ceEEEeccC-ccCc-ccHHHHHHHHHHh---CC--CCC----------------cEEEEeccCChhHHHHHHHhcCCCCc
Q 008461 35 QILILDEAD-RILD-VGFKKALNAIVSQ---LP--KHR----------------QTFLFSATQTKSVQDLARLSLKDPQY 91 (564)
Q Consensus 35 ~~lVlDEAD-~lld-~gf~~~l~~Il~~---lp--~~~----------------Q~llfSATl~~~v~~l~~~~l~~p~~ 91 (564)
.++|+||.- |++. ..|..-|...++. ++ +.. .+.++|+|.......+...+.-+-..
T Consensus 332 ~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~ 411 (908)
T PRK13107 332 EVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVV 411 (908)
T ss_pred EEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEE
Confidence 577899977 5543 2255555555443 21 112 45678888887766666665444433
Q ss_pred ccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCH
Q 008461 92 LSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 169 (564)
Q Consensus 92 i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~ 169 (564)
|..+.+.. ..... ..+......|..++..-+... .+.|+||||+|...++.++..|... |+++..+|+++.+
T Consensus 412 IPTnkp~~---R~d~~-d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~--gi~~~vLnak~~~ 485 (908)
T PRK13107 412 VPTNRPMV---RKDMA-DLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKE--KIPHEVLNAKFHE 485 (908)
T ss_pred CCCCCCcc---ceeCC-CcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHC--CCCeEeccCcccH
Confidence 32222211 11111 123345567888887777543 3889999999999999999999985 9999999999999
Q ss_pred HHHHHHHHHHhccCCeEEEecccccCCCcCCC------------------------------------CcEEEEcCCCCC
Q 008461 170 DRRMAIYAQFCEKRSVLFCTDVASRGLDFNKA------------------------------------VDWVVQVDCPED 213 (564)
Q Consensus 170 ~~R~~i~~~F~~~~~VLVaTdv~arGLD~pp~------------------------------------V~~VI~~d~P~s 213 (564)
.+|..+...|+... |+|||++|+||+||.-+ ==+||-...+.|
T Consensus 486 ~Ea~ii~~Ag~~G~-VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheS 564 (908)
T PRK13107 486 REAEIVAQAGRTGA-VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHES 564 (908)
T ss_pred HHHHHHHhCCCCCc-EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCch
Confidence 99999999998833 99999999999999211 127898999999
Q ss_pred HhhHHHHhcccccCCCCceEEEEeCcchH
Q 008461 214 VASYIHRVGRTARYNSGGRSVLFLTPTEM 242 (564)
Q Consensus 214 ~~~YiqRiGRtgR~g~~G~~il~l~~~e~ 242 (564)
..-=.|-.||+||.|.+|.+.+|++-.|.
T Consensus 565 rRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 565 RRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 99999999999999999999999987654
No 115
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.38 E-value=1.2e-11 Score=132.26 Aligned_cols=285 Identities=14% Similarity=0.144 Sum_probs=190.6
Q ss_pred CCcEEEEcHHHHHHHHhcC-CCC--CCCCcceEEEeccCccCcc-c--HHHHHHHHHHhC-----CCCCcEEEEeccCCh
Q 008461 8 ELNILVCTPGRLLQHMDET-PNF--DCSQLQILILDEADRILDV-G--FKKALNAIVSQL-----PKHRQTFLFSATQTK 76 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~-~~~--~~~~L~~lVlDEAD~lld~-g--f~~~l~~Il~~l-----p~~~Q~llfSATl~~ 76 (564)
+.++|.+.|.........+ ..+ .+-.+.+++.||.|-.+.. | -...+++++..+ ..+.|++-+|||+..
T Consensus 384 ~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~ 463 (1034)
T KOG4150|consen 384 GLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKD 463 (1034)
T ss_pred CcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCC
Confidence 7889999998775443322 111 1345678899999965432 1 234455555433 247899999999998
Q ss_pred hHHHHHHHhcCCCCcccccccccccCCccceeEEEEcCcc---------cHHHHHHHHHHH--cCCCcEEEEeCChHHHH
Q 008461 77 SVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE---------QKLDMLWSFIKA--HLNSKILVFLTSCKQVK 145 (564)
Q Consensus 77 ~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~---------~Kl~~L~~~L~~--~~~~k~IVF~~t~k~v~ 145 (564)
.+.....++.-+-..+ ++.. ..|..-.+++++.|+. .++.....++.. ..+-++|-||.+++.|+
T Consensus 464 ~~~~~~~~~~~~E~~L-i~~D---GSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CE 539 (1034)
T KOG4150|consen 464 RTRLRSELANLSELEL-VTID---GSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCE 539 (1034)
T ss_pred HHHHHHHhcCCcceEE-EEec---CCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHH
Confidence 8877666554433222 2222 2355566666665531 222222222211 12679999999999999
Q ss_pred HHHHHHHhhC----CCC--CeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHH
Q 008461 146 YVFEAFKKLR----PGI--PLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYI 218 (564)
Q Consensus 146 ~l~e~L~~l~----~gi--~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~Yi 218 (564)
.+....+..+ |.. .++.+.||....+|..|...+-. +..-+|||+.++-|||| .+.+.|+..++|.+.+.++
T Consensus 540 L~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDI-G~LDAVl~~GFP~S~aNl~ 618 (1034)
T KOG4150|consen 540 LVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDI-GHLDAVLHLGFPGSIANLW 618 (1034)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcccc-ccceeEEEccCchhHHHHH
Confidence 8876555432 221 36778999999999999988877 89999999999999999 8999999999999999999
Q ss_pred HHhcccccCCCCceEEEEeC--cchHHHHHHHHH-cCCCccccccccccchhHHHHHHHHHhcChhHHHHHHHHHHH-HH
Q 008461 219 HRVGRTARYNSGGRSVLFLT--PTEMKMLEKLRE-AKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFIT-YL 294 (564)
Q Consensus 219 qRiGRtgR~g~~G~~il~l~--~~e~~~l~~L~~-~~i~i~~~~~~~~~~~~i~~~l~~~~~~~~~l~~~a~~af~s-y~ 294 (564)
|..||+||.++...++.+.. |-+..++..-.. .+.|-.++.++-....-+...++.....-|--.+..+..|-+ .+
T Consensus 619 QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~~iL~~HlQCAA~ELPIN~~~D~q~Fg~~~l 698 (1034)
T KOG4150|consen 619 QQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNKHVLMQHLQCAALELPINLQYDQQHFGSGEL 698 (1034)
T ss_pred HHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccHHHHHHHHhHHhhcCccccchhhhhcccHHH
Confidence 99999999998877665554 556656544222 144544555554444555667777666666555556666655 56
Q ss_pred HHH
Q 008461 295 RSV 297 (564)
Q Consensus 295 rs~ 297 (564)
|.+
T Consensus 699 r~I 701 (1034)
T KOG4150|consen 699 RNI 701 (1034)
T ss_pred Hhh
Confidence 644
No 116
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.5e-12 Score=143.67 Aligned_cols=224 Identities=23% Similarity=0.329 Sum_probs=149.7
Q ss_pred ccccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCc-cCcccHHHHHHHHHHh-------CCC------CCcEE
Q 008461 3 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADR-ILDVGFKKALNAIVSQ-------LPK------HRQTF 68 (564)
Q Consensus 3 k~r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~-lld~gf~~~l~~Il~~-------lp~------~~Q~l 68 (564)
..+-...+|.++|-|-|+.-|.+. |-+...++|||||||. -+. .+.|-.+|++ +.+ ...+|
T Consensus 344 ~ti~e~T~IkFMTDGVLLrEi~~D--flL~kYSvIIlDEAHERSvn---TDILiGmLSRiV~LR~k~~ke~~~~kpLKLI 418 (1172)
T KOG0926|consen 344 GTIGEDTSIKFMTDGVLLREIEND--FLLTKYSVIILDEAHERSVN---TDILIGMLSRIVPLRQKYYKEQCQIKPLKLI 418 (1172)
T ss_pred cccCCCceeEEecchHHHHHHHHh--HhhhhceeEEechhhhccch---HHHHHHHHHHHHHHHHHHhhhhcccCceeEE
Confidence 344456889999999999998875 7789999999999994 221 1222222222 222 45789
Q ss_pred EEeccCChhHHHHH---HHhcCCCCcccccccccccCCccceeEEEEcCcc---cHHHHHHHHHHHcCCCcEEEEeCChH
Q 008461 69 LFSATQTKSVQDLA---RLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLE---QKLDMLWSFIKAHLNSKILVFLTSCK 142 (564)
Q Consensus 69 lfSATl~~~v~~l~---~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~---~Kl~~L~~~L~~~~~~k~IVF~~t~k 142 (564)
++|||+-- .++. +++-.-|-.|.+.... -|..+ |+--..+.+ +.+...+.+-+..+.+-+|||+.-..
T Consensus 419 IMSATLRV--sDFtenk~LFpi~pPlikVdARQ---fPVsI-HF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQq 492 (1172)
T KOG0926|consen 419 IMSATLRV--SDFTENKRLFPIPPPLIKVDARQ---FPVSI-HFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQ 492 (1172)
T ss_pred EEeeeEEe--cccccCceecCCCCceeeeeccc---CceEE-EeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChH
Confidence 99999763 3332 2222233344443221 12111 111112221 22233333444556889999999999
Q ss_pred HHHHHHHHHHhhCC------------------------------------------------------------------
Q 008461 143 QVKYVFEAFKKLRP------------------------------------------------------------------ 156 (564)
Q Consensus 143 ~v~~l~e~L~~l~~------------------------------------------------------------------ 156 (564)
.|.+|++.|++.+|
T Consensus 493 EV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~ 572 (1172)
T KOG0926|consen 493 EVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALA 572 (1172)
T ss_pred HHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccc
Confidence 99999999887531
Q ss_pred -------------------------------CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcE
Q 008461 157 -------------------------------GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDW 204 (564)
Q Consensus 157 -------------------------------gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~ 204 (564)
..-|+.|++=++......++..--. ..-|+|||++|+..|.| |+|.+
T Consensus 573 De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTI-PgIkY 651 (1172)
T KOG0926|consen 573 DENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTI-PGIKY 651 (1172)
T ss_pred cccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccccc-CCeeE
Confidence 0116778888888888888777766 55699999999999999 99999
Q ss_pred EEEcCCC------------------CCHhhHHHHhcccccCCCCceEEEEeCc
Q 008461 205 VVQVDCP------------------EDVASYIHRVGRTARYNSGGRSVLFLTP 239 (564)
Q Consensus 205 VI~~d~P------------------~s~~~YiqRiGRtgR~g~~G~~il~l~~ 239 (564)
||..+.- -|-++--||+|||||.| .|.|+-+++.
T Consensus 652 VVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 652 VVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred EEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 9975532 25556679999999997 7999999874
No 117
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.27 E-value=1.1e-10 Score=132.62 Aligned_cols=189 Identities=20% Similarity=0.259 Sum_probs=131.8
Q ss_pred ccccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCccc-----------HHHH-------HHHHHHhC---
Q 008461 3 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG-----------FKKA-------LNAIVSQL--- 61 (564)
Q Consensus 3 k~r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~g-----------f~~~-------l~~Il~~l--- 61 (564)
+...+..+|+|+|..-|...+..-.. -+++++++|.+|.++-.+ |... +..+...+
T Consensus 176 ~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~ 252 (1187)
T COG1110 176 RIESGDFDILITTSQFLSKRFEELSK---LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGE 252 (1187)
T ss_pred HHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhh
Confidence 34456899999999988777765432 367899999999887543 2211 11111111
Q ss_pred ---------------------CCCCcEEEEeccCChhHHH--HHHHhcCCCCcccccccccccCCccceeEEEEcCcccH
Q 008461 62 ---------------------PKHRQTFLFSATQTKSVQD--LARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQK 118 (564)
Q Consensus 62 ---------------------p~~~Q~llfSATl~~~v~~--l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~K 118 (564)
.+..++++.|||..+.-.. +.+..+. ...........++...|+.. .-
T Consensus 253 ~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg------FevG~~~~~LRNIvD~y~~~---~~ 323 (1187)
T COG1110 253 KRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG------FEVGSGGEGLRNIVDIYVES---ES 323 (1187)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC------CccCccchhhhheeeeeccC---cc
Confidence 1236889999997655422 3333222 11222233445666666655 34
Q ss_pred HHHHHHHHHHcCCCcEEEEeCC---hHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec----
Q 008461 119 LDMLWSFIKAHLNSKILVFLTS---CKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD---- 190 (564)
Q Consensus 119 l~~L~~~L~~~~~~k~IVF~~t---~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd---- 190 (564)
...+.++++.. +.-.|||+++ +..++.+++.|+.. |+++..+|++ ....++.|.. +.+|||...
T Consensus 324 ~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~--Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG 395 (1187)
T COG1110 324 LEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSH--GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYG 395 (1187)
T ss_pred HHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhc--CceEEEeecc-----chhhhhhhccCceeEEEEeccccc
Confidence 44555566555 5688999999 89999999999985 9999999983 3788999999 999999864
Q ss_pred ccccCCCcCCCCcEEEEcCCC
Q 008461 191 VASRGLDFNKAVDWVVQVDCP 211 (564)
Q Consensus 191 v~arGLD~pp~V~~VI~~d~P 211 (564)
++.||||+|..+.++|.|++|
T Consensus 396 ~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 396 VLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ceeecCCchhheeEEEEecCC
Confidence 789999998889999999998
No 118
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.19 E-value=2.2e-10 Score=129.05 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=71.1
Q ss_pred eeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCC--CCCHhhHHHHhcccccCCC--CceEE
Q 008461 160 LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC--PEDVASYIHRVGRTARYNS--GGRSV 234 (564)
Q Consensus 160 v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~--P~s~~~YiqRiGRtgR~g~--~G~~i 234 (564)
+.++|++|....|..+.-.|+. ...|||||..++-|||. | |+.||..+- --++-.|.|++|||||.|- .|.++
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNM-P-CrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINM-P-CRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCC-C-ceeEEEeccccccCchhHHhhhccccccccccccceE
Confidence 6789999999999999999999 99999999999999999 7 898888663 4588999999999999984 68888
Q ss_pred EEeCcch
Q 008461 235 LFLTPTE 241 (564)
Q Consensus 235 l~l~~~e 241 (564)
.+--|..
T Consensus 1043 FmgiP~~ 1049 (1330)
T KOG0949|consen 1043 FMGIPRQ 1049 (1330)
T ss_pred EEeCcHH
Confidence 8877753
No 119
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.18 E-value=2.4e-09 Score=115.31 Aligned_cols=239 Identities=18% Similarity=0.240 Sum_probs=175.4
Q ss_pred CCCcEEEEcHHHHHHHHhc----CCCCC-CCCcceEEEeccCccCcccHHHHHHHHHHh---CCC---------------
Q 008461 7 NELNILVCTPGRLLQHMDE----TPNFD-CSQLQILILDEADRILDVGFKKALNAIVSQ---LPK--------------- 63 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~----~~~~~-~~~L~~lVlDEAD~lld~gf~~~l~~Il~~---lp~--------------- 63 (564)
.+.+||||+|=-|...+.. ....+ ++++.++|+|-||.|+-. -...+..++.+ .|+
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQ-NW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~L 208 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQ-NWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYL 208 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHh-hHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Confidence 4689999999988766653 11222 899999999999976533 23444444444 443
Q ss_pred ------CCcEEEEeccCChhHHHHHHHhcCCCC-cccccc-----cccccCCccceeEEEEcCc-------ccHHHHHH-
Q 008461 64 ------HRQTFLFSATQTKSVQDLARLSLKDPQ-YLSVHE-----ESVTATPNRLQQTAMIVPL-------EQKLDMLW- 123 (564)
Q Consensus 64 ------~~Q~llfSATl~~~v~~l~~~~l~~p~-~i~v~~-----~~~~~~p~~l~q~~~~~~~-------~~Kl~~L~- 123 (564)
-+|||+||+..++.+..+.+..+.|.. .+.+.. .........++|.+...+. +.++....
T Consensus 209 dg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~ 288 (442)
T PF06862_consen 209 DGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTK 288 (442)
T ss_pred cCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHH
Confidence 169999999999999999888666543 222211 1123445567777775442 22333222
Q ss_pred ---HHHH-HcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc--ccCC
Q 008461 124 ---SFIK-AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA--SRGL 196 (564)
Q Consensus 124 ---~~L~-~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~--arGL 196 (564)
--|. ....+.+|||++|--.--.+.++|+. .++....+|-..++.+-...-..|.. ...||+.|.=+ -+-.
T Consensus 289 ~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~--~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy 366 (442)
T PF06862_consen 289 KILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKK--ENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRY 366 (442)
T ss_pred HHHHHhhhccCCCcEEEEecchhhhHHHHHHHHh--cCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhc
Confidence 2223 34468999999999998889999986 48999999999999999999999999 99999999854 5667
Q ss_pred CcCCCCcEEEEcCCCCCHhhHHHHhcccccCCC------CceEEEEeCcchHHHHHHHH
Q 008461 197 DFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS------GGRSVLFLTPTEMKMLEKLR 249 (564)
Q Consensus 197 D~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~------~G~~il~l~~~e~~~l~~L~ 249 (564)
.| .+|..||.|.+|..+.-|-..++-.+.... .+.|.++++.-+.-.|+++.
T Consensus 367 ~i-rGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 367 RI-RGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred ee-cCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 78 889999999999999999888865544332 57899999999887777763
No 120
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.18 E-value=1.8e-10 Score=129.08 Aligned_cols=212 Identities=18% Similarity=0.256 Sum_probs=138.7
Q ss_pred CCCcEEEEcHHHHHHHHhcC----CCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDET----PNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLA 82 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~----~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~ 82 (564)
+.+.|.|+|..++...+... ..|....+++||+||||| |.......|+.++..-+|.+ +||+...+..-.
T Consensus 255 ~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~dYFdA~~~gL--TATP~~~~d~~T 328 (875)
T COG4096 255 TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSILDYFDAATQGL--TATPKETIDRST 328 (875)
T ss_pred cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhHHHHHHHHHHHHhh--ccCccccccccc
Confidence 35799999999998776543 456677899999999999 66677778888885333333 888766433211
Q ss_pred HHhc-CCCCccc------------------cccc--ccccCCccc--------------eeEEEEcCcc------cHHH-
Q 008461 83 RLSL-KDPQYLS------------------VHEE--SVTATPNRL--------------QQTAMIVPLE------QKLD- 120 (564)
Q Consensus 83 ~~~l-~~p~~i~------------------v~~~--~~~~~p~~l--------------~q~~~~~~~~------~Kl~- 120 (564)
-.+. ..|.+.. +... .....|..+ .+.|-..+.+ ....
T Consensus 329 ~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~ 408 (875)
T COG4096 329 YGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTET 408 (875)
T ss_pred ccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHH
Confidence 1112 3343321 1100 000011111 1111111111 1112
Q ss_pred ---HHHHHHHH--cC--CCcEEEEeCChHHHHHHHHHHHhhCCCCC---eeeccCCCCHHHHHHHHHHHhc---cCCeEE
Q 008461 121 ---MLWSFIKA--HL--NSKILVFLTSCKQVKYVFEAFKKLRPGIP---LMCLYGRMKQDRRMAIYAQFCE---KRSVLF 187 (564)
Q Consensus 121 ---~L~~~L~~--~~--~~k~IVF~~t~k~v~~l~e~L~~l~~gi~---v~~lHg~m~~~~R~~i~~~F~~---~~~VLV 187 (564)
.+...+.. .. ..||||||.+..+++++.+.|....|... +..+.|+-.+.. ..+..|.. -..|.+
T Consensus 409 V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~Iai 486 (875)
T COG4096 409 VARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAI 486 (875)
T ss_pred HHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhcCCCCceEE
Confidence 23333333 21 46999999999999999999999877644 666777655443 33455544 568999
Q ss_pred EecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccC
Q 008461 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY 227 (564)
Q Consensus 188 aTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~ 227 (564)
+.+++..|||+ |.|-++|.+-.-.|...|+|++||+-|.
T Consensus 487 tvdlL~TGiDv-pev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 487 TVDLLTTGVDV-PEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ehhhhhcCCCc-hheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 99999999999 8899999999999999999999999995
No 121
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.14 E-value=1.6e-09 Score=119.91 Aligned_cols=141 Identities=15% Similarity=0.192 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-c---CCeEEEecc
Q 008461 118 KLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K---RSVLFCTDV 191 (564)
Q Consensus 118 Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~---~~VLVaTdv 191 (564)
|+..|-.+|... .+.+||||..-....+.+-.++.- .++....+-|.++.++|...++.|.. . .-.|++|-+
T Consensus 472 Km~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~--R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 472 KMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCML--RGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred ceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHh--cCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 444444444332 278999999888888877777643 59999999999999999999999988 4 348999999
Q ss_pred cccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCc--eEEEEeCcchHH--HHHHHHHcCCCcccccccc
Q 008461 192 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG--RSVLFLTPTEMK--MLEKLREAKIPIHFTKANT 262 (564)
Q Consensus 192 ~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G--~~il~l~~~e~~--~l~~L~~~~i~i~~~~~~~ 262 (564)
.+-|||+ -+.|.||.||.-|+|..=+|..-||.|.|+.. .++-|++.+..+ .+.+-.. ++.++.+-+..
T Consensus 550 GGLGINL-~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~-KL~Ld~~VIq~ 622 (971)
T KOG0385|consen 550 GGLGINL-TAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAA-KLRLDKLVIQQ 622 (971)
T ss_pred ccccccc-ccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHH-Hhchhhhhhcc
Confidence 9999999 89999999999999999999999999999754 455567766544 4444322 44444444433
No 122
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.13 E-value=5.7e-10 Score=118.18 Aligned_cols=210 Identities=24% Similarity=0.361 Sum_probs=141.6
Q ss_pred EEcHHHHHHHHhcCCCCCCCCcceEEEeccC-ccCcc-cHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhcCCCC
Q 008461 13 VCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDV-GFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQ 90 (564)
Q Consensus 13 V~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD-~lld~-gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l~~p~ 90 (564)
.||-|.|++-..+.+.+ ...++||||||| |-+.. -....+..++..-| +..++.+|||+-.. .+ +.++.++-
T Consensus 141 y~tDgmLlrEams~p~l--~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~a~--Kf-q~yf~n~P 214 (699)
T KOG0925|consen 141 YCTDGMLLREAMSDPLL--GRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMSATLDAE--KF-QRYFGNAP 214 (699)
T ss_pred HhcchHHHHHHhhCccc--ccccEEEechhhhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccchH--HH-HHHhCCCC
Confidence 47778777766666544 789999999999 43322 23345555666665 88999999997643 33 44555555
Q ss_pred cccccccccccCCccceeEEEEcCcccHHHHHHH-HHH---HcCCCcEEEEeCChHHHHHHHHHHHh----hCC---CCC
Q 008461 91 YLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWS-FIK---AHLNSKILVFLTSCKQVKYVFEAFKK----LRP---GIP 159 (564)
Q Consensus 91 ~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~-~L~---~~~~~k~IVF~~t~k~v~~l~e~L~~----l~~---gi~ 159 (564)
.+.+.. .-| ++.+|...+..+.++..+. .+. ...++-++||.......+..++.+.. +.+ .+.
T Consensus 215 ll~vpg----~~P--vEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~ 288 (699)
T KOG0925|consen 215 LLAVPG----THP--VEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLK 288 (699)
T ss_pred eeecCC----CCc--eEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCce
Confidence 555532 112 3345555555555543332 222 33478999999998888877777653 222 346
Q ss_pred eeeccCCCCHHHHHHHHHHHh----c--cCCeEEEecccccCCCcCCCCcEEEEcCC------------------CCCHh
Q 008461 160 LMCLYGRMKQDRRMAIYAQFC----E--KRSVLFCTDVASRGLDFNKAVDWVVQVDC------------------PEDVA 215 (564)
Q Consensus 160 v~~lHg~m~~~~R~~i~~~F~----~--~~~VLVaTdv~arGLD~pp~V~~VI~~d~------------------P~s~~ 215 (564)
|..+| +.....+++--. . ..+|+|+|+++.-.+-+ ++|.+||.-++ |-|..
T Consensus 289 v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslti-dgiv~VIDpGf~kqkVYNPRIRvesllv~PISka 363 (699)
T KOG0925|consen 289 VVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTI-DGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKA 363 (699)
T ss_pred EEecC----chhhccccCCCCcccCCCccceEEEEecchheeeee-ccEEEEecCchhhhcccCcceeeeeeeeccchHh
Confidence 78888 323333333221 1 45799999999999999 89999998664 56888
Q ss_pred hHHHHhcccccCCCCceEEEEeCcc
Q 008461 216 SYIHRVGRTARYNSGGRSVLFLTPT 240 (564)
Q Consensus 216 ~YiqRiGRtgR~g~~G~~il~l~~~ 240 (564)
+-.||+||+||. ++|+|+.+++..
T Consensus 364 sA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 364 SAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred HHHHHhhhccCC-CCCceEEeecHH
Confidence 999999999997 799999999864
No 123
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.11 E-value=2e-10 Score=111.34 Aligned_cols=85 Identities=48% Similarity=0.783 Sum_probs=78.0
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
++++|+||||++|+.++.+. .+.+.+++++|+||||.+.+.+|...+..++..++...|++++|||+++.+..++..++
T Consensus 118 ~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~ 196 (203)
T cd00268 118 RGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFL 196 (203)
T ss_pred CCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHC
Confidence 47899999999999988866 47789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 008461 87 KDPQYL 92 (564)
Q Consensus 87 ~~p~~i 92 (564)
.+|.+|
T Consensus 197 ~~~~~~ 202 (203)
T cd00268 197 RNPVRI 202 (203)
T ss_pred CCCEEe
Confidence 888765
No 124
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.07 E-value=3.7e-09 Score=120.30 Aligned_cols=200 Identities=17% Similarity=0.222 Sum_probs=137.1
Q ss_pred CcceEEEeccC-ccCc-ccHHHHHHHHHHh---CC--CC----------------CcEEEEeccCChhHHHHHHHhcCCC
Q 008461 33 QLQILILDEAD-RILD-VGFKKALNAIVSQ---LP--KH----------------RQTFLFSATQTKSVQDLARLSLKDP 89 (564)
Q Consensus 33 ~L~~lVlDEAD-~lld-~gf~~~l~~Il~~---lp--~~----------------~Q~llfSATl~~~v~~l~~~~l~~p 89 (564)
+=.++|+||.- |++. ..|..-|...++. ++ +. ..+.++|+|....-..+...+.-+-
T Consensus 307 dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~V 386 (925)
T PRK12903 307 DGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRV 386 (925)
T ss_pred CCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCE
Confidence 33677899876 5443 2355555555543 11 11 2456788887766666665554433
Q ss_pred CcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCC
Q 008461 90 QYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRM 167 (564)
Q Consensus 90 ~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m 167 (564)
..|..+.+.. .... ...+......|...+..-+... .+.|+||.|.|...++.++..|.+. |++.-.|++..
T Consensus 387 v~IPTnkP~~---R~D~-~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~--gi~h~vLNAk~ 460 (925)
T PRK12903 387 NVVPTNKPVI---RKDE-PDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEA--NIPHTVLNAKQ 460 (925)
T ss_pred EECCCCCCee---eeeC-CCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--CCCceeecccc
Confidence 3332221111 1111 1123445667888887766543 4789999999999999999999985 89988898863
Q ss_pred CHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCc---------EEEEcCCCCCHhhHHHHhcccccCCCCceEEEEe
Q 008461 168 KQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVD---------WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 237 (564)
Q Consensus 168 ~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~---------~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l 237 (564)
.++..-+-.=.. ...|.|||++|+||.|| . .. +||....|.|..--.|..|||||.|.+|.+-+|+
T Consensus 461 --~e~EA~IIa~AG~~GaVTIATNMAGRGTDI-~-Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l 536 (925)
T PRK12903 461 --NAREAEIIAKAGQKGAITIATNMAGRGTDI-K-LSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI 536 (925)
T ss_pred --hhhHHHHHHhCCCCCeEEEecccccCCcCc-c-CchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEE
Confidence 344443333223 67899999999999999 4 33 9999999999999999999999999999999999
Q ss_pred CcchH
Q 008461 238 TPTEM 242 (564)
Q Consensus 238 ~~~e~ 242 (564)
+-.+.
T Consensus 537 SLeD~ 541 (925)
T PRK12903 537 SLDDQ 541 (925)
T ss_pred ecchH
Confidence 86654
No 125
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.03 E-value=1.7e-09 Score=124.64 Aligned_cols=118 Identities=18% Similarity=0.270 Sum_probs=104.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-c---CCeEEEecccccCCCcCCCCcEEE
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K---RSVLFCTDVASRGLDFNKAVDWVV 206 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~---~~VLVaTdv~arGLD~pp~V~~VI 206 (564)
+.+||||-.-.+....|.++|... +++.-.|-|.+...-|...+..|.. . ...|+||-+.+-|||+ -..|.||
T Consensus 699 GHrVLIFSQMVRmLDIL~eYL~~r--~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINL-atADTVI 775 (1373)
T KOG0384|consen 699 GHRVLIFSQMVRMLDILAEYLSLR--GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINL-ATADTVI 775 (1373)
T ss_pred CceEEEhHHHHHHHHHHHHHHHHc--CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccc-cccceEE
Confidence 689999999999999999999874 9999999999999999999999988 3 4699999999999999 8999999
Q ss_pred EcCCCCCHhhHHHHhcccccCCCC--ceEEEEeCcc--hHHHHHHHHHc
Q 008461 207 QVDCPEDVASYIHRVGRTARYNSG--GRSVLFLTPT--EMKMLEKLREA 251 (564)
Q Consensus 207 ~~d~P~s~~~YiqRiGRtgR~g~~--G~~il~l~~~--e~~~l~~L~~~ 251 (564)
.||.-|+|..=+|..-||-|.|+. -.+|-|++.. |++++.+-..+
T Consensus 776 IFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~K 824 (1373)
T KOG0384|consen 776 IFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLK 824 (1373)
T ss_pred EeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHH
Confidence 999999999999999999999975 4577778865 44577765443
No 126
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.00 E-value=1.2e-08 Score=116.71 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=74.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCC---CCeeeccCCCCHH---------------------HHHHHHHHHhc--cCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPG---IPLMCLYGRMKQD---------------------RRMAIYAQFCE--KRS 184 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~g---i~v~~lHg~m~~~---------------------~R~~i~~~F~~--~~~ 184 (564)
+.+++|||.++..|..+++.|....+. .....++|..... ....++.+|+. ..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 489999999999999999999887554 3455566654332 22468889987 679
Q ss_pred eEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccC
Q 008461 185 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY 227 (564)
Q Consensus 185 VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~ 227 (564)
|||++|++..|.|. |.+++++..-+-. --.++|.+||+.|.
T Consensus 594 ilIVvdmllTGFDa-P~l~tLyldKplk-~h~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDA-PILNTLYLDKPLK-YHGLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCC-CccceEEEecccc-ccHHHHHHHHhccc
Confidence 99999999999999 8888777655444 45689999999993
No 127
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.98 E-value=1.6e-08 Score=117.16 Aligned_cols=217 Identities=22% Similarity=0.226 Sum_probs=127.9
Q ss_pred CCcEEEEcHHHHHHHHh--cCCCCCCC--Cc--ceEEEeccCccCcccHHHHHHHHHHhCC-CCCcEEEEeccCChhHHH
Q 008461 8 ELNILVCTPGRLLQHMD--ETPNFDCS--QL--QILILDEADRILDVGFKKALNAIVSQLP-KHRQTFLFSATQTKSVQD 80 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~--~~~~~~~~--~L--~~lVlDEAD~lld~gf~~~l~~Il~~lp-~~~Q~llfSATl~~~v~~ 80 (564)
...|+|||+..++-... ..+...+. .| +.|||||+|.+-...+ ..|..++..+. -...++++|||+|+.+..
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 56899999999986652 21111111 11 5899999997543322 23444444221 168899999999998876
Q ss_pred HH-HHh----------cCCC---Ccc---ccccc--------------------------ccccCCccceeEEEEcCccc
Q 008461 81 LA-RLS----------LKDP---QYL---SVHEE--------------------------SVTATPNRLQQTAMIVPLEQ 117 (564)
Q Consensus 81 l~-~~~----------l~~p---~~i---~v~~~--------------------------~~~~~p~~l~q~~~~~~~~~ 117 (564)
.. ..+ ...| ..| .+.+. .....|..-.-..+.++...
T Consensus 641 ~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~ 720 (1110)
T TIGR02562 641 TLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLP 720 (1110)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcc
Confidence 32 221 1111 111 11110 01111221122233333321
Q ss_pred -----HHHHHHHHHH--------HcC------CCc---EEEEeCChHHHHHHHHHHHhhCC----CCCeeeccCCCCHHH
Q 008461 118 -----KLDMLWSFIK--------AHL------NSK---ILVFLTSCKQVKYVFEAFKKLRP----GIPLMCLYGRMKQDR 171 (564)
Q Consensus 118 -----Kl~~L~~~L~--------~~~------~~k---~IVF~~t~k~v~~l~e~L~~l~~----gi~v~~lHg~m~~~~ 171 (564)
....+...+. .|. +++ -+|-+++.+.+-.++..|-.+.+ .+.+.+||+......
T Consensus 721 ~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~ 800 (1110)
T TIGR02562 721 RENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLL 800 (1110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHH
Confidence 2223332221 111 122 36667777777777776655432 345888999998888
Q ss_pred HHHHHHHHh----------------------c-----cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhccc
Q 008461 172 RMAIYAQFC----------------------E-----KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRT 224 (564)
Q Consensus 172 R~~i~~~F~----------------------~-----~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRt 224 (564)
|..+.+... + ...|+|||.+++.|+|+ +.+|+| --|.++++.|||+||+
T Consensus 801 Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~--dfd~~~--~~~~~~~sliQ~aGR~ 876 (1110)
T TIGR02562 801 RSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH--DYDWAI--ADPSSMRSIIQLAGRV 876 (1110)
T ss_pred HHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc--cCCeee--eccCcHHHHHHHhhcc
Confidence 877765531 1 23699999999999999 588888 4467899999999999
Q ss_pred ccCCC
Q 008461 225 ARYNS 229 (564)
Q Consensus 225 gR~g~ 229 (564)
.|.|.
T Consensus 877 ~R~~~ 881 (1110)
T TIGR02562 877 NRHRL 881 (1110)
T ss_pred ccccc
Confidence 99875
No 128
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.94 E-value=7.2e-09 Score=111.57 Aligned_cols=222 Identities=18% Similarity=0.239 Sum_probs=137.4
Q ss_pred CcceEEEeccCccCcccHHHHHHH-HHHhCCCCCcEEEEeccCChhHHHHHHHhcCC-CCcccccccccccCCccceeEE
Q 008461 33 QLQILILDEADRILDVGFKKALNA-IVSQLPKHRQTFLFSATQTKSVQDLARLSLKD-PQYLSVHEESVTATPNRLQQTA 110 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~-Il~~lp~~~Q~llfSATl~~~v~~l~~~~l~~-p~~i~v~~~~~~~~p~~l~q~~ 110 (564)
.+++.||||+.+|-|...+..+.. ++........+.+ .+.+.++.+..+.. ...+.+ +.|
T Consensus 275 ~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~~i~k~TGd~vev-------------~~Y 336 (700)
T KOG0953|consen 275 PYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVRKILKMTGDDVEV-------------REY 336 (700)
T ss_pred ceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHHHHHhhcCCeeEE-------------Eee
Confidence 457899999999988766555543 3333322222211 13344444443321 111111 111
Q ss_pred EEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc---cCCeEE
Q 008461 111 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLF 187 (564)
Q Consensus 111 ~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~---~~~VLV 187 (564)
-...+-.-.+.+..-+++..++-+||-|+. +..-.+...+.+. .+..+.+++|+++++.|.+--..|.+ ..+|||
T Consensus 337 eRl~pL~v~~~~~~sl~nlk~GDCvV~FSk-k~I~~~k~kIE~~-g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlV 414 (700)
T KOG0953|consen 337 ERLSPLVVEETALGSLSNLKPGDCVVAFSK-KDIFTVKKKIEKA-GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLV 414 (700)
T ss_pred cccCcceehhhhhhhhccCCCCCeEEEeeh-hhHHHHHHHHHHh-cCcceEEEecCCCCchhHHHHHHhCCCCCccceEE
Confidence 111111222355566666667888887764 4445555556553 24459999999999999999999988 678999
Q ss_pred EecccccCCCcCCCCcEEEEcCCC---------CCHhhHHHHhcccccCCC---CceEEEEeCcchHHHHHHHHHcCCCc
Q 008461 188 CTDVASRGLDFNKAVDWVVQVDCP---------EDVASYIHRVGRTARYNS---GGRSVLFLTPTEMKMLEKLREAKIPI 255 (564)
Q Consensus 188 aTdv~arGLD~pp~V~~VI~~d~P---------~s~~~YiqRiGRtgR~g~---~G~~il~l~~~e~~~l~~L~~~~i~i 255 (564)
|||++++|||+ +|+-||.|++- -+..+..|.+|||||.|. .|.+..|-. .+...|+++.+. |+
T Consensus 415 AsDAIGMGLNL--~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~-eDL~~L~~~l~~--p~ 489 (700)
T KOG0953|consen 415 ASDAIGMGLNL--NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS-EDLKLLKRILKR--PV 489 (700)
T ss_pred eeccccccccc--ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH-hhHHHHHHHHhC--Cc
Confidence 99999999999 59999999974 478899999999999985 465554433 344455555443 33
Q ss_pred cccccccccchhHHHHHHHHHhcChh
Q 008461 256 HFTKANTKRLQPVSGLLAALLVKYPD 281 (564)
Q Consensus 256 ~~~~~~~~~~~~i~~~l~~~~~~~~~ 281 (564)
+++. ..-+-....++..++..-|.
T Consensus 490 epi~--~agl~pt~eqie~fa~~~Pd 513 (700)
T KOG0953|consen 490 EPIK--NAGLWPTDEQIELFAYHLPD 513 (700)
T ss_pred hHHH--hccCCccHHHHHHHHHhCCC
Confidence 3321 12223344566666665554
No 129
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.93 E-value=4.2e-08 Score=110.40 Aligned_cols=202 Identities=16% Similarity=0.184 Sum_probs=138.8
Q ss_pred ceEEEeccC-ccCc-ccHHHHHHHHHHh---CC--CC----------------CcEEEEeccCChhHHHHHHHhcCCCCc
Q 008461 35 QILILDEAD-RILD-VGFKKALNAIVSQ---LP--KH----------------RQTFLFSATQTKSVQDLARLSLKDPQY 91 (564)
Q Consensus 35 ~~lVlDEAD-~lld-~gf~~~l~~Il~~---lp--~~----------------~Q~llfSATl~~~v~~l~~~~l~~p~~ 91 (564)
.++|+||.- |++. ..|..-+...++. ++ +. ..+.++|+|.......+...+.-+-..
T Consensus 310 eV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~ 389 (764)
T PRK12326 310 KVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSV 389 (764)
T ss_pred EEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEE
Confidence 577789876 4442 2344444444432 11 11 246789999988777777766544332
Q ss_pred ccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCH
Q 008461 92 LSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 169 (564)
Q Consensus 92 i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~ 169 (564)
|..+.+. ..... ...+......|..++..-+... .+.|+||.+.|....+.+...|.+. |++...|++....
T Consensus 390 IPtnkp~---~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~--gI~h~vLNAk~~~ 463 (764)
T PRK12326 390 IPPNKPN---IREDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA--GVPAVVLNAKNDA 463 (764)
T ss_pred CCCCCCc---eeecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC--CCcceeeccCchH
Confidence 2222111 11111 1233445667888887776443 4889999999999999999999985 8999999987432
Q ss_pred HHHHHHHHHHhccCCeEEEecccccCCCcCC--------------CCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEE
Q 008461 170 DRRMAIYAQFCEKRSVLFCTDVASRGLDFNK--------------AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 235 (564)
Q Consensus 170 ~~R~~i~~~F~~~~~VLVaTdv~arGLD~pp--------------~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il 235 (564)
.-..++.+--....|.|||++|+||.||.- +==+||....|.|..--.|-.|||||.|.+|.+-+
T Consensus 464 -~EA~IIa~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f 542 (764)
T PRK12326 464 -EEARIIAEAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVF 542 (764)
T ss_pred -hHHHHHHhcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeE
Confidence 223333333336789999999999999921 11289999999999999999999999999999999
Q ss_pred EeCcchHH
Q 008461 236 FLTPTEMK 243 (564)
Q Consensus 236 ~l~~~e~~ 243 (564)
|++-.|.-
T Consensus 543 ~lSleDdl 550 (764)
T PRK12326 543 FVSLEDDV 550 (764)
T ss_pred EEEcchhH
Confidence 99876543
No 130
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.89 E-value=3.5e-09 Score=99.05 Aligned_cols=73 Identities=34% Similarity=0.537 Sum_probs=63.0
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCC--CCCcEEEEeccCChhHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP--KHRQTFLFSATQTKSVQD 80 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp--~~~Q~llfSATl~~~v~~ 80 (564)
++++|+|+||++|+.++..... ++.++++||+||+|.+..+++...+..|+..+. .+.|++++|||++..++.
T Consensus 94 ~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 94 NQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp TTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSSTHHHHH
T ss_pred ccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCChhHhh
Confidence 4799999999999999987533 667799999999999999899999999998873 358999999999976654
No 131
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.86 E-value=5.5e-08 Score=111.98 Aligned_cols=200 Identities=17% Similarity=0.159 Sum_probs=135.7
Q ss_pred ceEEEeccC-ccCc-ccHHHHHHHHHHhC---C--C----------------CCcEEEEeccCChhHHHHHHHhcCCCCc
Q 008461 35 QILILDEAD-RILD-VGFKKALNAIVSQL---P--K----------------HRQTFLFSATQTKSVQDLARLSLKDPQY 91 (564)
Q Consensus 35 ~~lVlDEAD-~lld-~gf~~~l~~Il~~l---p--~----------------~~Q~llfSATl~~~v~~l~~~~l~~p~~ 91 (564)
+++|+||.- |++. ..|..-+...++.- + + -..+.++|+|....-..+...+.-+-..
T Consensus 451 ~V~IVDe~TGR~~~gr~~s~GLhQaiEaKE~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~v~~ 530 (970)
T PRK12899 451 QIVIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRKESQTFATVTLQNFFRLYEKLAGMTGTAITESREFKEIYNLYVLQ 530 (970)
T ss_pred EEEEEeCCCCccCCCCCcchHHHHHHHhhcCCCCCCCceeeeeehHHHHHhhCchhcccCCCCHHHHHHHHHHhCCCEEE
Confidence 577788876 4442 23555555554431 1 1 1256789999877666666555443333
Q ss_pred ccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCH
Q 008461 92 LSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 169 (564)
Q Consensus 92 i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~ 169 (564)
|..+.+.. ..... ..+......|..++..-+... .+.|+||-|.|....+.+...|... |++...|+.. +
T Consensus 531 iPt~kp~~---r~d~~-d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~--gi~h~vLNak--~ 602 (970)
T PRK12899 531 VPTFKPCL---RIDHN-DEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQN--RIEHTVLNAK--N 602 (970)
T ss_pred CCCCCCce---eeeCC-CcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc--CCcceecccc--h
Confidence 32221111 11111 123445567887777666543 4789999999999999999999885 8888888886 3
Q ss_pred HHHH-HHHHHHhccCCeEEEecccccCCCcCCC--C-----cEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcch
Q 008461 170 DRRM-AIYAQFCEKRSVLFCTDVASRGLDFNKA--V-----DWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241 (564)
Q Consensus 170 ~~R~-~i~~~F~~~~~VLVaTdv~arGLD~pp~--V-----~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e 241 (564)
..+. .++..-.....|.|||++|+||.||..+ | =+||....|.|..--.|-.||+||.|.+|.+.+|++-.|
T Consensus 603 ~~~Ea~iia~AG~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 603 HAQEAEIIAGAGKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred hhhHHHHHHhcCCCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 3333 2332222267899999999999999322 1 289999999999999999999999999999999998765
Q ss_pred H
Q 008461 242 M 242 (564)
Q Consensus 242 ~ 242 (564)
.
T Consensus 683 d 683 (970)
T PRK12899 683 R 683 (970)
T ss_pred H
Confidence 4
No 132
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.84 E-value=1.4e-07 Score=107.15 Aligned_cols=100 Identities=17% Similarity=0.278 Sum_probs=87.7
Q ss_pred EEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cC---CeEEEecccccCCCcCCCCcEEEEcCC
Q 008461 135 LVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR---SVLFCTDVASRGLDFNKAVDWVVQVDC 210 (564)
Q Consensus 135 IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~---~VLVaTdv~arGLD~pp~V~~VI~~d~ 210 (564)
.|+++..++...+.+.+..+. |..++.+||.|+..+|..+++.|.+ .. -.|.+|-+.+.||++ =+.+.||.||+
T Consensus 598 ~v~Isny~~tldl~e~~~~~~-g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinL-iGAsRlil~D~ 675 (776)
T KOG0390|consen 598 SVLISNYTQTLDLFEQLCRWR-GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNL-IGASRLILFDP 675 (776)
T ss_pred EEEeccHHHHHHHHHHHHhhc-CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceee-cccceEEEeCC
Confidence 455677788888888888876 9999999999999999999999998 32 367778899999999 89999999999
Q ss_pred CCCHhhHHHHhcccccCCCCceEEEE
Q 008461 211 PEDVASYIHRVGRTARYNSGGRSVLF 236 (564)
Q Consensus 211 P~s~~~YiqRiGRtgR~g~~G~~il~ 236 (564)
+|+|+.=.|.++|+-|.|+.-.|+++
T Consensus 676 dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 676 DWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred CCCchhHHHHHHHhccCCCcceEEEE
Confidence 99999999999999999987665554
No 133
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.81 E-value=3.8e-08 Score=104.84 Aligned_cols=209 Identities=19% Similarity=0.263 Sum_probs=135.9
Q ss_pred CCCcEEEEcHHHHHHHHhcCC--------CCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhH
Q 008461 7 NELNILVCTPGRLLQHMDETP--------NFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSV 78 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~--------~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v 78 (564)
.++.|+|+|...+.. -.... .+.-+...++||||+|.+...-|+..+.-+-.++ -++++||+-.+-
T Consensus 389 ~~~gvvvsTYsMva~-t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc-----KLGLTATLvRED 462 (776)
T KOG1123|consen 389 SGAGVVVTTYSMVAY-TGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC-----KLGLTATLVRED 462 (776)
T ss_pred CCCcEEEEeeehhhh-cccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHh-----hccceeEEeecc
Confidence 478899999976631 11000 1123467899999999999888998888777666 578899975443
Q ss_pred HHHHHH-hcCCCCccccc-----ccc--------------------cccCCccceeEEEEcCcccHHHHHHHHHHHc--C
Q 008461 79 QDLARL-SLKDPQYLSVH-----EES--------------------VTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--L 130 (564)
Q Consensus 79 ~~l~~~-~l~~p~~i~v~-----~~~--------------------~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~ 130 (564)
..+..+ +|-.|..+... ... .......-....+.+-...|+....-+|+-| .
T Consensus 463 dKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~R 542 (776)
T KOG1123|consen 463 DKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERR 542 (776)
T ss_pred ccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhc
Confidence 332211 12222221110 000 0000001111122233345555544445433 4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc--cCCeEEEecccccCCCcCCCCcEEEEc
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLFCTDVASRGLDFNKAVDWVVQV 208 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~--~~~VLVaTdv~arGLD~pp~V~~VI~~ 208 (564)
+.|+|||..+.-.....+--|. --+++|..+|.+|+.|++.|+- ..+.+|-+-+....+|+ |..+++||.
T Consensus 543 gDKiIVFsDnvfALk~YAikl~-------KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDL-PEAnvLIQI 614 (776)
T KOG1123|consen 543 GDKIIVFSDNVFALKEYAIKLG-------KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDL-PEANVLIQI 614 (776)
T ss_pred CCeEEEEeccHHHHHHHHHHcC-------CceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccC-CcccEEEEE
Confidence 7899999987665554443332 2458899999999999999988 78899999999999999 899999998
Q ss_pred CCCC-CHhhHHHHhcccccCCC
Q 008461 209 DCPE-DVASYIHRVGRTARYNS 229 (564)
Q Consensus 209 d~P~-s~~~YiqRiGRtgR~g~ 229 (564)
..-. |..+=.||.||.-|+.+
T Consensus 615 SSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 615 SSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred cccccchHHHHHHHHHHHHHhh
Confidence 8754 77788999999988753
No 134
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=1.3e-07 Score=109.43 Aligned_cols=201 Identities=16% Similarity=0.173 Sum_probs=138.7
Q ss_pred CcceEEEeccC-ccCcc-cHHHHHHHHHHhC-----CCCC----------------cEEEEeccCChhHHHHHHHhcCCC
Q 008461 33 QLQILILDEAD-RILDV-GFKKALNAIVSQL-----PKHR----------------QTFLFSATQTKSVQDLARLSLKDP 89 (564)
Q Consensus 33 ~L~~lVlDEAD-~lld~-gf~~~l~~Il~~l-----p~~~----------------Q~llfSATl~~~v~~l~~~~l~~p 89 (564)
+=+++|+||.- |++.. .|..-|...++.- .... .+-++|+|....-..+...+.-+-
T Consensus 509 dgkV~IVDe~TGRim~gRr~sdGLHQAIEAKE~V~I~~e~qT~AtIT~QnyFR~Y~kLsGMTGTA~tea~Ef~~IY~L~V 588 (1112)
T PRK12901 509 DGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYHKLAGMTGTAETEAGEFWDIYKLDV 588 (1112)
T ss_pred CCEEEEEeCCCCccCCCCccchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCCE
Confidence 33677788876 55532 2555555554431 1122 345788888776666666654443
Q ss_pred CcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCC
Q 008461 90 QYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRM 167 (564)
Q Consensus 90 ~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m 167 (564)
..|..+.+.. ... ....+......|+.++..-+... .+.|+||-+.|....+.+...|... |++.-+|++..
T Consensus 589 v~IPTnrP~~---R~D-~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~--gI~H~VLNAK~ 662 (1112)
T PRK12901 589 VVIPTNRPIA---RKD-KEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMR--KIPHNVLNAKL 662 (1112)
T ss_pred EECCCCCCcc---eec-CCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHc--CCcHHHhhccc
Confidence 3332222111 111 12233445667888888777553 4889999999999999999999985 88888888864
Q ss_pred CHHHHHHHHHHHhc-cCCeEEEecccccCCCcCC--------CCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeC
Q 008461 168 KQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK--------AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238 (564)
Q Consensus 168 ~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp--------~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~ 238 (564)
. .+..-+-.-.. ...|-|||++|+||.|| . +==+||-...|.|..--.|-.||+||.|.+|.+-+|++
T Consensus 663 h--~~EAeIVA~AG~~GaVTIATNMAGRGTDI-kLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 663 H--QKEAEIVAEAGQPGTVTIATNMAGRGTDI-KLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred h--hhHHHHHHhcCCCCcEEEeccCcCCCcCc-ccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEE
Confidence 4 33333333333 77899999999999999 4 12388999999999999999999999999999999998
Q ss_pred cchH
Q 008461 239 PTEM 242 (564)
Q Consensus 239 ~~e~ 242 (564)
-.+.
T Consensus 740 LEDd 743 (1112)
T PRK12901 740 LEDN 743 (1112)
T ss_pred cccH
Confidence 6654
No 135
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.80 E-value=1.5e-07 Score=105.08 Aligned_cols=124 Identities=17% Similarity=0.230 Sum_probs=104.7
Q ss_pred cHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-c--CCeEEEecc
Q 008461 117 QKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K--RSVLFCTDV 191 (564)
Q Consensus 117 ~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~--~~VLVaTdv 191 (564)
.|+..|..+|..- .+.++|+|..|+.....+-..|.. .+|+..+.+-|..+...|..++.+|.. . .-.|++|-+
T Consensus 530 GKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~-~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrv 608 (923)
T KOG0387|consen 530 GKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRR-AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRV 608 (923)
T ss_pred chHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHh-cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecc
Confidence 4777777777643 367999999999999988888875 369999999999999999999999997 3 348899999
Q ss_pred cccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCc--eEEEEeCcchH
Q 008461 192 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG--RSVLFLTPTEM 242 (564)
Q Consensus 192 ~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G--~~il~l~~~e~ 242 (564)
.+-|+|+ -+.+-||.||+-|+|++=.|..-|+-|+|+.- .++-|++....
T Consensus 609 GGLGlNL-TgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 609 GGLGLNL-TGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred ccccccc-ccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcH
Confidence 9999999 88999999999999999999999999999753 34445665433
No 136
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.73 E-value=2.9e-07 Score=106.02 Aligned_cols=200 Identities=18% Similarity=0.196 Sum_probs=137.7
Q ss_pred ceEEEeccC-ccCc-ccHHHHHHHHHHh---CC--CC----------------CcEEEEeccCChhHHHHHHHhcCCCCc
Q 008461 35 QILILDEAD-RILD-VGFKKALNAIVSQ---LP--KH----------------RQTFLFSATQTKSVQDLARLSLKDPQY 91 (564)
Q Consensus 35 ~~lVlDEAD-~lld-~gf~~~l~~Il~~---lp--~~----------------~Q~llfSATl~~~v~~l~~~~l~~p~~ 91 (564)
.++|+||.- |++. ..|..-|...++. ++ +. ..+.++|+|.......+...+.-+-..
T Consensus 332 ~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~ 411 (913)
T PRK13103 332 QVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVV 411 (913)
T ss_pred EEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEE
Confidence 577789866 5543 2355555555443 11 11 245688888877777777666544433
Q ss_pred ccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCH
Q 008461 92 LSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 169 (564)
Q Consensus 92 i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~ 169 (564)
|..+.+.. ..... ..+......|..++..-+... .+.|+||-+.|....+.+...|... |++.-+|+....
T Consensus 412 IPTnkP~~---R~D~~-d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~--gi~h~VLNAk~~- 484 (913)
T PRK13103 412 IPPNKPLA---RKDFN-DLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKE--GIEHKVLNAKYH- 484 (913)
T ss_pred CCCCCCcc---cccCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHc--CCcHHHhccccc-
Confidence 33322211 11111 223455677888888777643 4889999999999999999999985 888888888633
Q ss_pred HHHHHHHHHHhc-cCCeEEEecccccCCCcCCC------------------------------------CcEEEEcCCCC
Q 008461 170 DRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA------------------------------------VDWVVQVDCPE 212 (564)
Q Consensus 170 ~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~------------------------------------V~~VI~~d~P~ 212 (564)
.+..-+-.=.. ...|.|||++|+||.||.-+ ==+||-...|.
T Consensus 485 -~~EA~IIa~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerhe 563 (913)
T PRK13103 485 -EKEAEIIAQAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHE 563 (913)
T ss_pred -hhHHHHHHcCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCc
Confidence 33333333223 67899999999999999211 12789999999
Q ss_pred CHhhHHHHhcccccCCCCceEEEEeCcchH
Q 008461 213 DVASYIHRVGRTARYNSGGRSVLFLTPTEM 242 (564)
Q Consensus 213 s~~~YiqRiGRtgR~g~~G~~il~l~~~e~ 242 (564)
|..-=.|-.|||||.|.+|.+-+|++-.+.
T Consensus 564 SrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 564 SRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred hHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 999999999999999999999999987554
No 137
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.71 E-value=2.1e-07 Score=109.54 Aligned_cols=107 Identities=22% Similarity=0.370 Sum_probs=79.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhh--CCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCc--E
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKL--RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVD--W 204 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l--~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~--~ 204 (564)
.++++||||+|.+..+.++..|... ..++++.. .+.. ..|..+++.|+. ...|||||+.+++|||| |+.. +
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~-~g~~l~~ 748 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDF-PGNGLVC 748 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeeccccc-CCCceEE
Confidence 3679999999999999999999752 23444433 2333 578899999999 88999999999999999 7766 5
Q ss_pred EEEcCCCC------------------------------CHhhHHHHhcccccCCCCceEEEEeCcc
Q 008461 205 VVQVDCPE------------------------------DVASYIHRVGRTARYNSGGRSVLFLTPT 240 (564)
Q Consensus 205 VI~~d~P~------------------------------s~~~YiqRiGRtgR~g~~G~~il~l~~~ 240 (564)
||...+|. ....+.|.+||.=|.....-+++++.+.
T Consensus 749 viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 749 LVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 66666662 1245678889998887654455555543
No 138
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.58 E-value=7e-07 Score=103.46 Aligned_cols=124 Identities=24% Similarity=0.317 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHcC----------------CCcEEEEeCChHHHHHHHHH-HHhhCCCCCeeeccCCCCHHHHHHHHHHHh
Q 008461 118 KLDMLWSFIKAHL----------------NSKILVFLTSCKQVKYVFEA-FKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 180 (564)
Q Consensus 118 Kl~~L~~~L~~~~----------------~~k~IVF~~t~k~v~~l~e~-L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~ 180 (564)
|+.+|..+|..+. ..+++|||.-+...+.+..- |+...|.+.-+.+-|..++.+|.++.++|.
T Consensus 1311 Kl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN 1390 (1549)
T KOG0392|consen 1311 KLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFN 1390 (1549)
T ss_pred hHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhc
Confidence 5556666665432 45899999999999888764 555667888889999999999999999999
Q ss_pred c--cCC-eEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCc--eEEEEeCcchH
Q 008461 181 E--KRS-VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG--RSVLFLTPTEM 242 (564)
Q Consensus 181 ~--~~~-VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G--~~il~l~~~e~ 242 (564)
+ .++ .|++|.|.+-|+|+ -+.|.||.++--|+|..=+|.+-||.|.|+.- .++-+++.+-.
T Consensus 1391 ~DptIDvLlLTThVGGLGLNL-TGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1391 EDPTIDVLLLTTHVGGLGLNL-TGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred CCCceeEEEEeeecccccccc-CCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccH
Confidence 9 455 56678899999999 89999999999999999999999999999753 35556666543
No 139
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.55 E-value=1.5e-06 Score=99.69 Aligned_cols=161 Identities=19% Similarity=0.215 Sum_probs=99.8
Q ss_pred CcceEEEeccC-ccCc-ccHHHHHHHHHHhC---C--CC----------------CcEEEEeccCChhHHHHHHHhcCCC
Q 008461 33 QLQILILDEAD-RILD-VGFKKALNAIVSQL---P--KH----------------RQTFLFSATQTKSVQDLARLSLKDP 89 (564)
Q Consensus 33 ~L~~lVlDEAD-~lld-~gf~~~l~~Il~~l---p--~~----------------~Q~llfSATl~~~v~~l~~~~l~~p 89 (564)
+=.++|+||.- |++. ..|..-+...++.- + +. ..+.++|+|....-..+...+.-+-
T Consensus 305 dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~v 384 (870)
T CHL00122 305 NNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEV 384 (870)
T ss_pred CCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCE
Confidence 33567789865 4432 23555555555431 1 11 2456888888776556666554433
Q ss_pred CcccccccccccCCccceeEEEEcCcccHHHHHHHHHHH--cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCC
Q 008461 90 QYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRM 167 (564)
Q Consensus 90 ~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~--~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m 167 (564)
..|..+.+. ....+ ...+......|..++..-+.. ..+.|+||-|.|....+.+...|... |++.-+|++.-
T Consensus 385 v~IPtnkp~---~R~d~-~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~--gi~h~vLNAk~ 458 (870)
T CHL00122 385 VCIPTHRPM---LRKDL-PDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEY--RLPHQLLNAKP 458 (870)
T ss_pred EECCCCCCc---cceeC-CCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHc--CCccceeeCCC
Confidence 333222111 11111 123344556677777665543 23789999999999999999999885 89989999874
Q ss_pred CHHHHH-HHHHHHhccCCeEEEecccccCCCcC
Q 008461 168 KQDRRM-AIYAQFCEKRSVLFCTDVASRGLDFN 199 (564)
Q Consensus 168 ~~~~R~-~i~~~F~~~~~VLVaTdv~arGLD~p 199 (564)
.+..+. .|+..--....|.|||++|+||.||.
T Consensus 459 ~~~~~EA~IIA~AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 459 ENVRRESEIVAQAGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred ccchhHHHHHHhcCCCCcEEEeccccCCCcCee
Confidence 332333 34444222788999999999999983
No 140
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.49 E-value=1.4e-06 Score=101.29 Aligned_cols=232 Identities=17% Similarity=0.247 Sum_probs=153.8
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHH------HHHHHHHHhCCCCCcEEEEeccCChhHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFK------KALNAIVSQLPKHRQTFLFSATQTKSVQD 80 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~------~~l~~Il~~lp~~~Q~llfSATl~~~v~~ 80 (564)
..-+|+|+||.++ +.+. .++++++.|.||+|.+.+.. + -.+..|-..+-+..+++.+|..+++. .+
T Consensus 1233 ~~~~vii~tpe~~-d~lq-----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana-~d 1304 (1674)
T KOG0951|consen 1233 QKGQVIISTPEQW-DLLQ-----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRYIASQLEKKIRVVALSSSLANA-RD 1304 (1674)
T ss_pred hhcceEEechhHH-HHHh-----hhhhcceEeeehhhhhcccC-CceEEEEeeHHHHHHHHHhheeEEEeehhhccc-hh
Confidence 4568999999998 4553 46889999999999988432 1 12677777888889999999988874 44
Q ss_pred HHHHhcCCCCcccccccccccCCcccee-EEEEcCcccHHH----HHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHh
Q 008461 81 LARLSLKDPQYLSVHEESVTATPNRLQQ-TAMIVPLEQKLD----MLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKK 153 (564)
Q Consensus 81 l~~~~l~~p~~i~v~~~~~~~~p~~l~q-~~~~~~~~~Kl~----~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~ 153 (564)
+ .+......+..... ....|..++. .+-.......+. ..+.-+..+ .+++.+||+++++.|..++-.|-.
T Consensus 1305 ~--ig~s~~~v~Nf~p~-~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~ 1381 (1674)
T KOG0951|consen 1305 L--IGASSSGVFNFSPS-VRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVT 1381 (1674)
T ss_pred h--ccccccceeecCcc-cCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccch
Confidence 4 22222222332222 1222332222 222222222221 122233333 368999999999999888754322
Q ss_pred h--------------------CCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcC---
Q 008461 154 L--------------------RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVD--- 209 (564)
Q Consensus 154 l--------------------~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d--- 209 (564)
. ....+.++=|-+|+......+-.-|.. .+.|+|...- ..|+-. ..+.||..+
T Consensus 1382 ~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~--~~~lVvvmgt~~ 1458 (1674)
T KOG0951|consen 1382 FSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKL--KAHLVVVMGTQY 1458 (1674)
T ss_pred hhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccc--cceEEEEeccee
Confidence 1 012223333889999998889999988 7777777666 788876 367787755
Q ss_pred --------CCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHHHHcCCCc
Q 008461 210 --------CPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPI 255 (564)
Q Consensus 210 --------~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~~i~i 255 (564)
.+.+.....|++|+|.| .|.|+++.....+.+++......+|.
T Consensus 1459 ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lPv 1509 (1674)
T KOG0951|consen 1459 YDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLPV 1509 (1674)
T ss_pred ecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCch
Confidence 35679999999999988 67899999999888888775555553
No 141
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.48 E-value=4.1e-06 Score=95.59 Aligned_cols=220 Identities=12% Similarity=0.157 Sum_probs=125.4
Q ss_pred ccccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccC--c-ccHHHHHHHH--HHhCCCCCcEEEEeccCChh
Q 008461 3 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL--D-VGFKKALNAI--VSQLPKHRQTFLFSATQTKS 77 (564)
Q Consensus 3 k~r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~ll--d-~gf~~~l~~I--l~~lp~~~Q~llfSATl~~~ 77 (564)
+...+...|+|||-.-+. ..+.++.+||+||=|.-. + .+...+...+ +...-.+..+|+.|||.+-+
T Consensus 235 ~~~~G~~~IViGtRSAvF--------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSle 306 (665)
T PRK14873 235 AVLRGQARVVVGTRSAVF--------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAE 306 (665)
T ss_pred HHhCCCCcEEEEcceeEE--------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHH
Confidence 344567899999998763 578999999999998422 1 1222222222 22223478899999997755
Q ss_pred HHHHHHHhcCCCCcccccccccccCCccceeEEEEcCc--------cc---HHHHHHHHHHHcC-CCcEEEEeCC-----
Q 008461 78 VQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPL--------EQ---KLDMLWSFIKAHL-NSKILVFLTS----- 140 (564)
Q Consensus 78 v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~--------~~---Kl~~L~~~L~~~~-~~k~IVF~~t----- 140 (564)
....+... ....+.............+ ..+.... .. --..++..+++.. .+++|||+|.
T Consensus 307 s~~~~~~g--~~~~~~~~~~~~~~~~P~v--~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap 382 (665)
T PRK14873 307 AQALVESG--WAHDLVAPRPVVRARAPRV--RALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVP 382 (665)
T ss_pred HHHHHhcC--cceeeccccccccCCCCeE--EEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCC
Confidence 44443322 1111111111000101111 1111100 00 0123444444332 2388888665
Q ss_pred ---hH---------------------------------------------------HHHHHHHHHHhhCCCCCeeeccCC
Q 008461 141 ---CK---------------------------------------------------QVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 141 ---~k---------------------------------------------------~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
|. -++.+.+.|.+.+|+.++..+-++
T Consensus 383 ~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d 462 (665)
T PRK14873 383 SLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGD 462 (665)
T ss_pred eeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChH
Confidence 11 234555666667777777765432
Q ss_pred CCHHHHHHHHHHHhccCCeEEEec----ccccCCCcCCCCcEEEEcCC------CC------CHhhHHHHhcccccCCCC
Q 008461 167 MKQDRRMAIYAQFCEKRSVLFCTD----VASRGLDFNKAVDWVVQVDC------PE------DVASYIHRVGRTARYNSG 230 (564)
Q Consensus 167 m~~~~R~~i~~~F~~~~~VLVaTd----v~arGLD~pp~V~~VI~~d~------P~------s~~~YiqRiGRtgR~g~~ 230 (564)
.++..|..+.+|||+|. +++ +++++|+.+|. |. ....+.|-+||+||.+..
T Consensus 463 -------~~l~~~~~~~~IlVGTqgaepm~~------g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~ 529 (665)
T PRK14873 463 -------QVVDTVDAGPALVVATPGAEPRVE------GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADG 529 (665)
T ss_pred -------HHHHhhccCCCEEEECCCCccccc------CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCC
Confidence 47888866889999999 666 24667766664 22 455678899999999999
Q ss_pred ceEEEEeCcchHHHHHHH
Q 008461 231 GRSVLFLTPTEMKMLEKL 248 (564)
Q Consensus 231 G~~il~l~~~e~~~l~~L 248 (564)
|.+++...|. ...++.+
T Consensus 530 G~V~iq~~p~-~~~~~~l 546 (665)
T PRK14873 530 GQVVVVAESS-LPTVQAL 546 (665)
T ss_pred CEEEEEeCCC-CHHHHHH
Confidence 9999986443 3444444
No 142
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.38 E-value=2.3e-06 Score=91.44 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=86.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc--cCC-eEEEecccccCCCcCCCCcEEEE
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRS-VLFCTDVASRGLDFNKAVDWVVQ 207 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~--~~~-VLVaTdv~arGLD~pp~V~~VI~ 207 (564)
+.|.+||+.-....+.+...+... ++....+.|..+...|....+.|.. ... .+++-..++.||+| .+.+.||.
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~r--~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~-tAa~~VVF 568 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNKR--KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTL-TAASVVVF 568 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHHc--CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceee-eccceEEE
Confidence 679999999999999999988874 8889999999999999999999987 333 56677889999999 89999999
Q ss_pred cCCCCCHhhHHHHhcccccCCCCc
Q 008461 208 VDCPEDVASYIHRVGRTARYNSGG 231 (564)
Q Consensus 208 ~d~P~s~~~YiqRiGRtgR~g~~G 231 (564)
..+|+++.-.+|.=-|+.|.|...
T Consensus 569 aEL~wnPgvLlQAEDRaHRiGQks 592 (689)
T KOG1000|consen 569 AELHWNPGVLLQAEDRAHRIGQKS 592 (689)
T ss_pred EEecCCCceEEechhhhhhccccc
Confidence 999999999999888888888753
No 143
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.35 E-value=9e-06 Score=93.54 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=100.9
Q ss_pred ceEEEeccC-ccCc-ccHHHHHHHHHHhC---C--CC----------------CcEEEEeccCChhHHHHHHHhcCCCCc
Q 008461 35 QILILDEAD-RILD-VGFKKALNAIVSQL---P--KH----------------RQTFLFSATQTKSVQDLARLSLKDPQY 91 (564)
Q Consensus 35 ~~lVlDEAD-~lld-~gf~~~l~~Il~~l---p--~~----------------~Q~llfSATl~~~v~~l~~~~l~~p~~ 91 (564)
.++|+||.- |++. ..|..-+...++.- + +. ..+.++|+|.......+...+.-+-..
T Consensus 322 ~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~ 401 (939)
T PRK12902 322 EVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTV 401 (939)
T ss_pred EEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEEE
Confidence 566788865 5443 23555555555431 1 11 255688888877666666665444333
Q ss_pred ccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCH
Q 008461 92 LSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 169 (564)
Q Consensus 92 i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~ 169 (564)
|..+.+... ... ...+......|..++..-+... .+.|+||-+.|....+.+...|... |++.-+|++.-.+
T Consensus 402 IPTnkP~~R---~d~-~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~--gi~h~vLNAk~~~ 475 (939)
T PRK12902 402 IPTNRPRRR---QDW-PDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQ--GIPHNLLNAKPEN 475 (939)
T ss_pred cCCCCCeee---ecC-CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHc--CCchheeeCCCcc
Confidence 322222111 111 1123445567888887766542 4899999999999999999999985 8988889987333
Q ss_pred HHHH-HHHHHHhccCCeEEEecccccCCCc
Q 008461 170 DRRM-AIYAQFCEKRSVLFCTDVASRGLDF 198 (564)
Q Consensus 170 ~~R~-~i~~~F~~~~~VLVaTdv~arGLD~ 198 (564)
.++. .|+..--....|-|||++|+||.||
T Consensus 476 ~~~EA~IIa~AG~~GaVTIATNMAGRGTDI 505 (939)
T PRK12902 476 VEREAEIVAQAGRKGAVTIATNMAGRGTDI 505 (939)
T ss_pred hHhHHHHHHhcCCCCcEEEeccCCCCCcCE
Confidence 3333 3444432278899999999999998
No 144
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.31 E-value=1e-05 Score=96.18 Aligned_cols=108 Identities=22% Similarity=0.350 Sum_probs=79.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCC--CcE
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA--VDW 204 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~--V~~ 204 (564)
.++++||||+|.+..+.+++.|..... ++.+.. . ++....|..+++.|+. ...||++|..+..|||| |+ +.+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~-pg~~l~~ 827 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDI-PGDELSC 827 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCcccCcccc-CCCceEE
Confidence 367999999999999999999976422 233332 2 3444567899999998 88899999999999999 65 588
Q ss_pred EEEcCCCC------------------------------CHhhHHHHhcccccCCCCceEEEEeCcc
Q 008461 205 VVQVDCPE------------------------------DVASYIHRVGRTARYNSGGRSVLFLTPT 240 (564)
Q Consensus 205 VI~~d~P~------------------------------s~~~YiqRiGRtgR~g~~G~~il~l~~~ 240 (564)
||...+|. -+..+.|-+||.=|....--+++++.+.
T Consensus 828 viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 828 LVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred EEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 99988763 1334577889988877543345555543
No 145
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=3.7e-06 Score=90.61 Aligned_cols=238 Identities=24% Similarity=0.261 Sum_probs=156.8
Q ss_pred CCCcEEEEcHHHHHHHHhcC----CCCC-CCCcceEEEeccCccCcccHHHHHHHHHHhC---CCC--------------
Q 008461 7 NELNILVCTPGRLLQHMDET----PNFD-CSQLQILILDEADRILDVGFKKALNAIVSQL---PKH-------------- 64 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~----~~~~-~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l---p~~-------------- 64 (564)
...+||||+|=-|.-.+.++ ..++ ++.+.++|+|-||-++-.. ...+..|+.+| |..
T Consensus 384 y~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~DfSRVR~wyL 462 (698)
T KOG2340|consen 384 YKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVDFSRVRMWYL 462 (698)
T ss_pred cccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCChhheehhee
Confidence 46799999998886555432 1232 7899999999999776554 34555555554 331
Q ss_pred -------CcEEEEeccCChhHHHHHHHhcCCCCc-ccccc---c-ccccCCccceeEEE--EcC-----cccHHHHHHHH
Q 008461 65 -------RQTFLFSATQTKSVQDLARLSLKDPQY-LSVHE---E-SVTATPNRLQQTAM--IVP-----LEQKLDMLWSF 125 (564)
Q Consensus 65 -------~Q~llfSATl~~~v~~l~~~~l~~p~~-i~v~~---~-~~~~~p~~l~q~~~--~~~-----~~~Kl~~L~~~ 125 (564)
+||++||+-..+....+...++.|..- +.... . ........+.|.+. .|. .+.++.....-
T Consensus 463 ~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ 542 (698)
T KOG2340|consen 463 DGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDK 542 (698)
T ss_pred ccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHh
Confidence 599999998888777777666554321 11100 0 11111111222211 111 23344433332
Q ss_pred HHH----cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc--ccCCCc
Q 008461 126 IKA----HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA--SRGLDF 198 (564)
Q Consensus 126 L~~----~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~--arGLD~ 198 (564)
|-- ..-..+|||.++--.--.+.++|++. ++....+|---+...-...-+.|-. ...||+-|.-+ -|--+|
T Consensus 543 ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e--~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~i 620 (698)
T KOG2340|consen 543 IMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE--EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHI 620 (698)
T ss_pred hchhhcccccCceEEEecchhhHHHHHHHhhhh--hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhhee
Confidence 211 11356799999999988999999885 6888888877777777777888888 88999999865 577899
Q ss_pred CCCCcEEEEcCCCCCHhhH---HHHhcccccCCC----CceEEEEeCcchHHHHHHH
Q 008461 199 NKAVDWVVQVDCPEDVASY---IHRVGRTARYNS----GGRSVLFLTPTEMKMLEKL 248 (564)
Q Consensus 199 pp~V~~VI~~d~P~s~~~Y---iqRiGRtgR~g~----~G~~il~l~~~e~~~l~~L 248 (564)
.+|..||.|.+|..|.-| +.+.||+.-.|+ .-.|.++++..+.--|..+
T Consensus 621 -kGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 621 -KGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred -cceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 899999999999998766 556677765443 3568888888776554443
No 146
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.26 E-value=2.3e-06 Score=80.54 Aligned_cols=86 Identities=41% Similarity=0.695 Sum_probs=72.9
Q ss_pred CcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhcCC
Q 008461 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKD 88 (564)
Q Consensus 9 ~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l~~ 88 (564)
.+|+++||+++...+.... .....+.++|+||||.+....+...+..++..+++..+++++|||+++.+...+..++.+
T Consensus 106 ~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~ 184 (201)
T smart00487 106 TDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLND 184 (201)
T ss_pred CCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCC
Confidence 3999999999998887653 566788999999999988767888999999999889999999999999999988888876
Q ss_pred CCccccc
Q 008461 89 PQYLSVH 95 (564)
Q Consensus 89 p~~i~v~ 95 (564)
+..+...
T Consensus 185 ~~~~~~~ 191 (201)
T smart00487 185 PVFIDVG 191 (201)
T ss_pred CEEEeCC
Confidence 6555443
No 147
>COG4889 Predicted helicase [General function prediction only]
Probab=98.15 E-value=1.3e-06 Score=98.33 Aligned_cols=96 Identities=22% Similarity=0.327 Sum_probs=75.2
Q ss_pred CcEEEEeCChHHHHHHHHHHHhh-----------CCCCCe--eeccCCCCHHHHHHHHHH---Hhc-cCCeEEEeccccc
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKL-----------RPGIPL--MCLYGRMKQDRRMAIYAQ---FCE-KRSVLFCTDVASR 194 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l-----------~~gi~v--~~lHg~m~~~~R~~i~~~---F~~-~~~VLVaTdv~ar 194 (564)
.+.|-||.+.++...+.+.|... ++++.+ -++.|.|...+|...+.. |.. .++||-.--+++.
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 36789998888877777666442 245444 456689999999544433 233 5678888889999
Q ss_pred CCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCC
Q 008461 195 GLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN 228 (564)
Q Consensus 195 GLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g 228 (564)
|||+ |+.+.||.|++-.+.-..+|.+||+-|..
T Consensus 541 GVDV-PaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 541 GVDV-PALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred CCCc-cccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 9999 99999999999999999999999999964
No 148
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.08 E-value=3.6e-05 Score=88.33 Aligned_cols=113 Identities=25% Similarity=0.295 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cC-CeEEEecccccCCCc
Q 008461 121 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR-SVLFCTDVASRGLDF 198 (564)
Q Consensus 121 ~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~-~VLVaTdv~arGLD~ 198 (564)
.+..++... ++++||||+|....+.+++.+...... -....+|.. .+...++.|.. .. .++|+|..+++||||
T Consensus 470 ~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~-~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 470 YLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERST-LPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCcc-ceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 444444444 569999999999999999999874222 133445543 34489999998 44 899999999999999
Q ss_pred CCC--CcEEEEcCCCC------------------------------CHhhHHHHhcccccCCCCceEEEEeCc
Q 008461 199 NKA--VDWVVQVDCPE------------------------------DVASYIHRVGRTARYNSGGRSVLFLTP 239 (564)
Q Consensus 199 pp~--V~~VI~~d~P~------------------------------s~~~YiqRiGRtgR~g~~G~~il~l~~ 239 (564)
|+ ..+||...+|. ......|-+||.=|.-..--+++++..
T Consensus 545 -~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 545 -PGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred -CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 65 47889988873 355788999999986554334444443
No 149
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.06 E-value=8.8e-05 Score=86.31 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=33.4
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV 48 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~ 48 (564)
..-.|+++||..|.--|..+ .+++..+..||+||||++...
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~-ri~~~~itgiiv~~Ahr~~~~ 46 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTG-IIPPELITGILVLRADRIIES 46 (814)
T ss_pred hcCCEEEEechhhHhHHhcC-CCCHHHccEEEEeeccccccc
Confidence 34579999999987666554 688999999999999998643
No 150
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.99 E-value=0.00011 Score=86.26 Aligned_cols=105 Identities=21% Similarity=0.244 Sum_probs=76.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCC-CCcEEEE
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK-AVDWVVQ 207 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp-~V~~VI~ 207 (564)
.+++++|+|+|.+..+.+++.|... ..++ ...|.-. .|..++++|+. ...||++|..+.+|||+|+ ....||.
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~--~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI 720 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQW--QVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVI 720 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhc--CCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEE
Confidence 4689999999999999999999754 4555 3444221 25668999999 7889999999999999933 3566677
Q ss_pred cCCCC------------------------------CHhhHHHHhcccccCCC-CceEEEEeCcc
Q 008461 208 VDCPE------------------------------DVASYIHRVGRTARYNS-GGRSVLFLTPT 240 (564)
Q Consensus 208 ~d~P~------------------------------s~~~YiqRiGRtgR~g~-~G~~il~l~~~ 240 (564)
..+|- -+..+.|-+||.=|... .| +++++.+.
T Consensus 721 ~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G-vv~ilD~R 783 (820)
T PRK07246 721 TRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS-AVLILDRR 783 (820)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE-EEEEECCc
Confidence 77662 13457788899888765 45 45555543
No 151
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.96 E-value=1.8e-05 Score=75.12 Aligned_cols=110 Identities=25% Similarity=0.444 Sum_probs=73.9
Q ss_pred HHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec--ccccCCCc
Q 008461 124 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD--VASRGLDF 198 (564)
Q Consensus 124 ~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd--v~arGLD~ 198 (564)
.+++. .++.+||||+|....+.+++.+..... ++.++.- ....+..+++.|+. ...||+|+. .++.||||
T Consensus 3 ~l~~~-~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~ 77 (167)
T PF13307_consen 3 ELISA-VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDF 77 (167)
T ss_dssp HHHHC-CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--
T ss_pred HHHhc-CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecC
Confidence 34433 369999999999999999998876421 3333332 24577899999999 888999999 99999999
Q ss_pred CCC--CcEEEEcCCCC----C--------------------------HhhHHHHhcccccCCCCceEEEEeCc
Q 008461 199 NKA--VDWVVQVDCPE----D--------------------------VASYIHRVGRTARYNSGGRSVLFLTP 239 (564)
Q Consensus 199 pp~--V~~VI~~d~P~----s--------------------------~~~YiqRiGRtgR~g~~G~~il~l~~ 239 (564)
|+ +++||...+|. + .....|-+||+-|....--+++++.+
T Consensus 78 -~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 78 -PGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp -ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred -CCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 64 88999999883 1 12345678999998765445555554
No 152
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.88 E-value=4e-05 Score=87.98 Aligned_cols=117 Identities=15% Similarity=0.226 Sum_probs=95.6
Q ss_pred cHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cC---CeEEEec
Q 008461 117 QKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR---SVLFCTD 190 (564)
Q Consensus 117 ~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~---~VLVaTd 190 (564)
.|+..|-.+|-+. .+.+++.||.-..-...+-.+|.- .++..+.+-|.....+|...+..|.. .. ..|++|-
T Consensus 710 GKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~--~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386|consen 710 GKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQI--REYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred cHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhh--hhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeec
Confidence 3455554444332 278999999887777777777764 47888999999999999999999988 43 5889999
Q ss_pred ccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEE
Q 008461 191 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 236 (564)
Q Consensus 191 v~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~ 236 (564)
..+.|+|+ ...+.||.||.-|++-...|+--|+-|.|..-.+-++
T Consensus 788 agglglNl-Qtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~ 832 (1157)
T KOG0386|consen 788 AGGLGLNL-QTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVL 832 (1157)
T ss_pred ccccccch-hhcceEEEecCCCCchhHHHHHHHHHHhhchhheeee
Confidence 99999999 9999999999999999999999999999975444443
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.83 E-value=0.00041 Score=80.44 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=59.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhC------CCCCeeeccCCCCHHHHHHHHHHHhc-----cCCeEEEe--cccccCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLR------PGIPLMCLYGRMKQDRRMAIYAQFCE-----KRSVLFCT--DVASRGL 196 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~------~gi~v~~lHg~m~~~~R~~i~~~F~~-----~~~VLVaT--dv~arGL 196 (564)
.++.+||||+|-...+.+++.+.... .+..++. -+. ....+..+++.|+. ...||+|+ ..++.||
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~-E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGI 598 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFV-ETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGI 598 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEE-eCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcc
Confidence 37899999999999999998876521 1122322 221 12577889999965 34699999 8899999
Q ss_pred CcCCC--CcEEEEcCCCC
Q 008461 197 DFNKA--VDWVVQVDCPE 212 (564)
Q Consensus 197 D~pp~--V~~VI~~d~P~ 212 (564)
|| ++ +++||.+++|.
T Consensus 599 Df-~~~~~r~ViivGlPf 615 (705)
T TIGR00604 599 DF-CDDLGRAVIMVGIPY 615 (705)
T ss_pred cc-CCCCCcEEEEEccCC
Confidence 99 65 79999999985
No 154
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.81 E-value=0.00035 Score=80.79 Aligned_cols=75 Identities=23% Similarity=0.331 Sum_probs=58.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-----cCCeEEEecccccCCCcCCC--Cc
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-----KRSVLFCTDVASRGLDFNKA--VD 203 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-----~~~VLVaTdv~arGLD~pp~--V~ 203 (564)
++.++|||+|.+..+.++..|... .+..++ .+|.. .|..+++.|++ ...||++|..+..|||| |+ ++
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~-~~~~ll-~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~-pGd~l~ 607 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRD-LRLMLL-VQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDL-PGDYLT 607 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHh-cCCcEE-EeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccC-CCCceE
Confidence 556999999999999999998753 234443 45642 46778877764 46799999999999999 66 78
Q ss_pred EEEEcCCC
Q 008461 204 WVVQVDCP 211 (564)
Q Consensus 204 ~VI~~d~P 211 (564)
+||...+|
T Consensus 608 ~vII~kLP 615 (697)
T PRK11747 608 QVIITKIP 615 (697)
T ss_pred EEEEEcCC
Confidence 99998877
No 155
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.79 E-value=0.00011 Score=82.78 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=112.0
Q ss_pred cHHHHHHHHHHHcC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-c--CCeEEEecc
Q 008461 117 QKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K--RSVLFCTDV 191 (564)
Q Consensus 117 ~Kl~~L~~~L~~~~--~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~--~~VLVaTdv 191 (564)
.|...|..+|.... +.++|+|-.=......|-.+|..+ ++....|-|......|..++..|.. + ...|++|-+
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l--~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKA 838 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTL--GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKA 838 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhc--CceEEeecCCccchHHHHHHHhhccCCceEEEEEeecc
Confidence 35566666665432 579999988888888887788775 8999999999999999999999988 3 358999999
Q ss_pred cccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCC--CceEEEEeCcchHH-HHHHHHHcCCCccc
Q 008461 192 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS--GGRSVLFLTPTEMK-MLEKLREAKIPIHF 257 (564)
Q Consensus 192 ~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~--~G~~il~l~~~e~~-~l~~L~~~~i~i~~ 257 (564)
.+-|||+ -..++||.+|+..+|-.=.|.--||.|.|. +-.++-+++.+..+ .+.+|.+.++.++.
T Consensus 839 GG~GINL-t~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~ 906 (941)
T KOG0389|consen 839 GGFGINL-TCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEA 906 (941)
T ss_pred Ccceecc-cccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhh
Confidence 9999999 889999999999999888898888888886 45567778877665 67777776665543
No 156
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.79 E-value=5.2e-05 Score=66.97 Aligned_cols=68 Identities=43% Similarity=0.653 Sum_probs=51.5
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccC
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQ 74 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl 74 (564)
..+.+|+|+|++.+...+.... .....+.++|+||+|.+....+...........+...+++++|||+
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 4578999999999988776542 3456789999999999877654444333444456788999999995
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.71 E-value=0.00049 Score=78.86 Aligned_cols=215 Identities=15% Similarity=0.200 Sum_probs=128.2
Q ss_pred CcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHH-------HHHHhCCCCCcEEEEeccCChhHHHH
Q 008461 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALN-------AIVSQLPKHRQTFLFSATQTKSVQDL 81 (564)
Q Consensus 9 ~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~-------~Il~~lp~~~Q~llfSATl~~~v~~l 81 (564)
.+-++++...|..+-. -.+.+.++|||||+-.++..=|...+. .+...+.....+|++-||+.....++
T Consensus 122 ~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdF 197 (824)
T PF02399_consen 122 YDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDF 197 (824)
T ss_pred cCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHH
Confidence 4667777777754321 135678999999999877654433322 22334455678999999999999998
Q ss_pred HHHhcCCCCc-ccccccc------------------------------cc--c----CCccceeEEEEcCcccHHHHHHH
Q 008461 82 ARLSLKDPQY-LSVHEES------------------------------VT--A----TPNRLQQTAMIVPLEQKLDMLWS 124 (564)
Q Consensus 82 ~~~~l~~p~~-i~v~~~~------------------------------~~--~----~p~~l~q~~~~~~~~~Kl~~L~~ 124 (564)
......+..+ +.+..-. .. . .+.......+......-+..|..
T Consensus 198 l~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~ 277 (824)
T PF02399_consen 198 LASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLA 277 (824)
T ss_pred HHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHH
Confidence 8775443221 1111000 00 0 00000000000111111122222
Q ss_pred HHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc--cCCeEEEecccccCCCcCCCC
Q 008461 125 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLFCTDVASRGLDFNKAV 202 (564)
Q Consensus 125 ~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~--~~~VLVaTdv~arGLD~pp~V 202 (564)
-|. .++++-||++|..-++.+.+..... ...++.++|.-+.. .+ .+ +.+|++-|.++..|++| ...
T Consensus 278 ~L~--~gknIcvfsSt~~~~~~v~~~~~~~--~~~Vl~l~s~~~~~---dv----~~W~~~~VviYT~~itvG~Sf-~~~ 345 (824)
T PF02399_consen 278 RLN--AGKNICVFSSTVSFAEIVARFCARF--TKKVLVLNSTDKLE---DV----ESWKKYDVVIYTPVITVGLSF-EEK 345 (824)
T ss_pred HHh--CCCcEEEEeChHHHHHHHHHHHHhc--CCeEEEEcCCCCcc---cc----ccccceeEEEEeceEEEEecc-chh
Confidence 222 2677888999999999888887764 67788888876655 22 23 68899999999999999 544
Q ss_pred --cEEEEc--CCC--CCHhhHHHHhcccccCCCCceEEEEeCcc
Q 008461 203 --DWVVQV--DCP--EDVASYIHRVGRTARYNSGGRSVLFLTPT 240 (564)
Q Consensus 203 --~~VI~~--d~P--~s~~~YiqRiGRtgR~g~~G~~il~l~~~ 240 (564)
+-|.-| ... .+..+..|++||+-.. .....++.+.+.
T Consensus 346 HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 346 HFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred hceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 333333 222 3566789999999444 456677777664
No 158
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.00027 Score=81.27 Aligned_cols=125 Identities=22% Similarity=0.247 Sum_probs=95.4
Q ss_pred cCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEe
Q 008461 113 VPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 189 (564)
Q Consensus 113 ~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaT 189 (564)
.....|+.++...+... .++|+||-+.+....+.+...|.+. |++...+...-. .|..-+-.+.. ...|-|||
T Consensus 409 ~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~--~i~h~VLNAk~h--~~EA~Iia~AG~~gaVTiAT 484 (822)
T COG0653 409 KTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKA--GIPHNVLNAKNH--AREAEIIAQAGQPGAVTIAT 484 (822)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhc--CCCceeeccccH--HHHHHHHhhcCCCCcccccc
Confidence 34567888888777543 3899999999999999999999975 888777777533 66666667766 77899999
Q ss_pred cccccCCCcCCCCc----------EEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcch
Q 008461 190 DVASRGLDFNKAVD----------WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241 (564)
Q Consensus 190 dv~arGLD~pp~V~----------~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e 241 (564)
++|+||-||--+-. +||-..--.|..-=-|-.||+||.|-+|.+..|++-.+
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 99999999822222 34544444555555588999999999999998887554
No 159
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.67 E-value=0.00025 Score=83.33 Aligned_cols=122 Identities=20% Similarity=0.261 Sum_probs=102.0
Q ss_pred cHHHHHHHHH-HHc--CCC--cEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc---cCCeEEE
Q 008461 117 QKLDMLWSFI-KAH--LNS--KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFC 188 (564)
Q Consensus 117 ~Kl~~L~~~L-~~~--~~~--k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~---~~~VLVa 188 (564)
.|+..+..++ ... .+. ++|||+........+...+... ++..+.++|+++...|...+..|.. ....+++
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~--~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls 769 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKAL--GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLS 769 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhc--CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEE
Confidence 5677777777 222 245 8999999999999999999886 5789999999999999999999998 3457778
Q ss_pred ecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCce--EEEEeCcch
Q 008461 189 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGR--SVLFLTPTE 241 (564)
Q Consensus 189 Tdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~--~il~l~~~e 241 (564)
|.+++.|+|+ -..++||.||+.+++....|...|+.|.|.... ++-+++...
T Consensus 770 ~kagg~glnL-t~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 770 LKAGGLGLNL-TGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ecccccceee-cccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 8899999999 799999999999999999999999999987554 444555443
No 160
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.63 E-value=0.00022 Score=79.40 Aligned_cols=128 Identities=18% Similarity=0.231 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc--cCCeEEEecccc
Q 008461 118 KLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLFCTDVAS 193 (564)
Q Consensus 118 Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~--~~~VLVaTdv~a 193 (564)
|+..|-.+|... .+.++|+|+.-.+....+-++|.. .++..+.+.|......|..++..|.. ..-.|++|-+.+
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~y--r~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVY--RGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHh--hccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 444444444332 278999999999999999999976 48999999999999999999999998 456899999999
Q ss_pred cCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCC--ceEEEEeCcchH--HHHHHH
Q 008461 194 RGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG--GRSVLFLTPTEM--KMLEKL 248 (564)
Q Consensus 194 rGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~--G~~il~l~~~e~--~~l~~L 248 (564)
-||++ -+.+.||.||..|++..-.|...|+.|.|.. -.++-+++.... .++.+-
T Consensus 1107 LGINL-TAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA 1164 (1185)
T KOG0388|consen 1107 LGINL-TAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERA 1164 (1185)
T ss_pred ccccc-cccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHh
Confidence 99999 8999999999999999999999999999964 456666665433 244443
No 161
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.57 E-value=0.00039 Score=80.92 Aligned_cols=124 Identities=20% Similarity=0.319 Sum_probs=94.0
Q ss_pred ccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc--c-CCeEEEeccc
Q 008461 116 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--K-RSVLFCTDVA 192 (564)
Q Consensus 116 ~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~--~-~~VLVaTdv~ 192 (564)
..++..|+.-|+.. +.++|||..-.+..+-|-..|... |+-.+.|.|....++|...+++|.. . .+.|++|-..
T Consensus 1262 LQtLAiLLqQLk~e-ghRvLIfTQMtkmLDVLeqFLnyH--gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1262 LQTLAILLQQLKSE-GHRVLIFTQMTKMLDVLEQFLNYH--GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred HHHHHHHHHHHHhc-CceEEehhHHHHHHHHHHHHHhhc--ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 33444444444444 789999999999888887777654 8888889999999999999999998 2 4688899999
Q ss_pred ccCCCcCCCCcEEEEcCCCCCHh------hHHHHhcccccCCCCceEEEEeCcchHH--HHHH
Q 008461 193 SRGLDFNKAVDWVVQVDCPEDVA------SYIHRVGRTARYNSGGRSVLFLTPTEMK--MLEK 247 (564)
Q Consensus 193 arGLD~pp~V~~VI~~d~P~s~~------~YiqRiGRtgR~g~~G~~il~l~~~e~~--~l~~ 247 (564)
+.|||+ -+.|.||.||.-|++. +..||||+| +.-..|-|++....+ +|++
T Consensus 1339 gvGiNL-tgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRLISe~TIEeniLkk 1396 (1958)
T KOG0391|consen 1339 GVGINL-TGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRLISERTIEENILKK 1396 (1958)
T ss_pred cccccc-ccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEeeccchHHHHHHhh
Confidence 999999 8999999999988765 556666665 334556666655332 4544
No 162
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.41 E-value=0.0033 Score=71.49 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-----cCCeEEEeccccc
Q 008461 120 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-----KRSVLFCTDVASR 194 (564)
Q Consensus 120 ~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-----~~~VLVaTdv~ar 194 (564)
..+..++... ++.++|.|+|.+..+.+++.+.... .++ +.+.|..+ .|...+++|+. ...|||+|+.+..
T Consensus 460 ~~~~~~~~~~-~G~~lvLfTS~~~~~~~~~~l~~~l-~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfwe 534 (636)
T TIGR03117 460 LSTAAILRKA-QGGTLVLTTAFSHISAIGQLVELGI-PAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWT 534 (636)
T ss_pred HHHHHHHHHc-CCCEEEEechHHHHHHHHHHHHhhc-CCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccc
Confidence 3444555444 6799999999999999999997643 233 34456433 45678888987 3689999999999
Q ss_pred CCCc------C---CCCcEEEEcCCCC
Q 008461 195 GLDF------N---KAVDWVVQVDCPE 212 (564)
Q Consensus 195 GLD~------p---p~V~~VI~~d~P~ 212 (564)
|||+ | ..+++||..-+|-
T Consensus 535 GvDv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 535 GIDLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred ccccCCccCCCCCCCcccEEEEEeCCC
Confidence 9999 2 4599999988873
No 163
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.40 E-value=0.00038 Score=79.64 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=99.7
Q ss_pred ccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhh--------------------CCCCCeeeccCCCCHHHHH
Q 008461 116 EQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKL--------------------RPGIPLMCLYGRMKQDRRM 173 (564)
Q Consensus 116 ~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l--------------------~~gi~v~~lHg~m~~~~R~ 173 (564)
..|+-.|+.+|+.. .+.++|||..|......+-.+|... ..|..-+.|.|......|.
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 45777888888654 4899999999988887776666542 1244567888999999999
Q ss_pred HHHHHHhc--cC---CeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEE
Q 008461 174 AIYAQFCE--KR---SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 236 (564)
Q Consensus 174 ~i~~~F~~--~~---~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~ 236 (564)
.....|.. +. ..||+|-+.+-|||+ -+.+-||.||..|++.--+|-+=|+-|+|..-.|+++
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNL-vAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINL-VAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccce-eecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99999988 32 389999999999999 7899999999999999999999999999986666554
No 164
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.10 E-value=0.0013 Score=75.27 Aligned_cols=108 Identities=14% Similarity=0.271 Sum_probs=83.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhh-----CCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCc
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKL-----RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVD 203 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l-----~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~ 203 (564)
..+-++||.+--...-+|+..+... ..-.+++.+|+.+...+...+++.... ..+++++|.++.--+-+ .++.
T Consensus 642 i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTi-dd~v 720 (1282)
T KOG0921|consen 642 IDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITI-DDVV 720 (1282)
T ss_pred CccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeee-ccee
Confidence 3678899999988888877665432 134568889999888888888888877 88999999999999988 7777
Q ss_pred EEEEcCCC------------------CCHhhHHHHhcccccCCCCceEEEEeCc
Q 008461 204 WVVQVDCP------------------EDVASYIHRVGRTARYNSGGRSVLFLTP 239 (564)
Q Consensus 204 ~VI~~d~P------------------~s~~~YiqRiGRtgR~g~~G~~il~l~~ 239 (564)
.||..+.- .+....+||.||+||. +.|.|..+...
T Consensus 721 ~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 721 YVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 77765432 3677889999999987 56777666544
No 165
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.76 E-value=0.0055 Score=66.28 Aligned_cols=131 Identities=18% Similarity=0.174 Sum_probs=99.0
Q ss_pred HHHHHHHHH---HHc-CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc--cCC-eEEEec
Q 008461 118 KLDMLWSFI---KAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRS-VLFCTD 190 (564)
Q Consensus 118 Kl~~L~~~L---~~~-~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~--~~~-VLVaTd 190 (564)
|+.+|..-| ... ..-|.|||..-......+.-.|.+ .|+++.-+-|+|++..|..+++.|++ .+. .|++-.
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~k--aGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGK--AGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhc--cCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 555554433 222 245889998877777777777777 49999999999999999999999999 554 566777
Q ss_pred ccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCC--CceEEEEeCcchHH-HHHHHHHc
Q 008461 191 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS--GGRSVLFLTPTEMK-MLEKLREA 251 (564)
Q Consensus 191 v~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~--~G~~il~l~~~e~~-~l~~L~~~ 251 (564)
+.+..||+ -....|..+|+-|+++-=+|.-.|..|.|+ +-.++.|+.....+ .+-.|.++
T Consensus 699 AGGVALNL-teASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeK 761 (791)
T KOG1002|consen 699 AGGVALNL-TEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEK 761 (791)
T ss_pred cCceEeee-chhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHH
Confidence 77788999 789999999999999988888888888775 55667676665443 44444443
No 166
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=96.42 E-value=0.0032 Score=59.09 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=43.5
Q ss_pred CCCcEEEEcHHHHHHHHhcCCC----------CCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCC
Q 008461 7 NELNILVCTPGRLLQHMDETPN----------FDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 75 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~----------~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~ 75 (564)
...+|+++|...|......... .......+||+||||++.... .+..++. .+...+|+||||+.
T Consensus 110 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 110 NDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp SS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred ccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 4678999999999877654211 123466899999999965443 1555555 45778999999975
No 167
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.19 E-value=0.027 Score=52.18 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHhc-c-CCeEEEecccccCCCcCCC--CcEEEEcCCCC
Q 008461 166 RMKQDRRMAIYAQFCE-K-RSVLFCTDVASRGLDFNKA--VDWVVQVDCPE 212 (564)
Q Consensus 166 ~m~~~~R~~i~~~F~~-~-~~VLVaTdv~arGLD~pp~--V~~VI~~d~P~ 212 (564)
+....+...+++.|+. . ..||++|.-++.|||| |+ +++||...+|.
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~-~g~~~r~vii~glPf 79 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDF-PGDYLRAVIIDGLPF 79 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceec-CCCCeeEEEEEecCC
Confidence 3455567889999998 4 4899999889999999 65 57899988873
No 168
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.94 E-value=0.03 Score=51.85 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=33.7
Q ss_pred HHHHHHHHHhc-cC---CeEEEecc--cccCCCcCCC--CcEEEEcCCCC
Q 008461 171 RRMAIYAQFCE-KR---SVLFCTDV--ASRGLDFNKA--VDWVVQVDCPE 212 (564)
Q Consensus 171 ~R~~i~~~F~~-~~---~VLVaTdv--~arGLD~pp~--V~~VI~~d~P~ 212 (564)
+...+++.|+. .. .||+|+.- ++.|||| |+ +++||.+.+|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~-~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDF-PDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceec-CCCccEEEEEEecCC
Confidence 44788999988 43 79999987 8999999 66 67999999883
No 169
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=95.83 E-value=0.0051 Score=71.90 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=32.1
Q ss_pred CCcEEEEcHHHH-HHHHhcCCCCCCC-------CcceEEEeccCccCc
Q 008461 8 ELNILVCTPGRL-LQHMDETPNFDCS-------QLQILILDEADRILD 47 (564)
Q Consensus 8 ~~~ILV~TPgrL-l~~L~~~~~~~~~-------~L~~lVlDEAD~lld 47 (564)
+++|+||||||| +++|..+ .+.++ .+.++||||||.||-
T Consensus 183 ~~DIVygTPgRLgfDyLrd~-~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 183 QCDVVYGTASEFGFDYLRDN-SIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred CCCEEEECCChhHHHHhhCC-CCCcCHHHhhcccccEEEEechhhhhh
Confidence 699999999999 9999875 34444 568999999998763
No 170
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.26 E-value=0.36 Score=58.13 Aligned_cols=105 Identities=23% Similarity=0.201 Sum_probs=67.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCC-----------------C----eeeccCCCCHHHHHHHHHHH-hc--cCCeE
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGI-----------------P----LMCLYGRMKQDRRMAIYAQF-CE--KRSVL 186 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi-----------------~----v~~lHg~m~~~~R~~i~~~F-~~--~~~VL 186 (564)
+.+++|-|++++.+..+++.+....+.+ . ....|.... ..+.....+| .. ..++|
T Consensus 519 ~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~d~~kil 597 (962)
T COG0610 519 DLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLK-DEKKDLIKRFKLKDDPLDLL 597 (962)
T ss_pred CceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHHH-HHHhhhhhhhcCcCCCCCEE
Confidence 5678888888886666665544432111 0 010122222 2233334443 22 67899
Q ss_pred EEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCC----CCceEEEEeC
Q 008461 187 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN----SGGRSVLFLT 238 (564)
Q Consensus 187 VaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g----~~G~~il~l~ 238 (564)
|.+|++-.|.|- | +-+++=+|-|.---..+|.+-||.|.- ..|..+-|..
T Consensus 598 IV~dmlLTGFDa-P-~L~TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 598 IVVDMLLTGFDA-P-CLNTLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred EEEccccccCCc-c-ccceEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 999999999999 7 666777899998999999999999953 2366665555
No 171
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=95.17 E-value=0.071 Score=49.50 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=42.0
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCccc--HHHHHHHHHHhCCCCCcEEEEeccCChhH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG--FKKALNAIVSQLPKHRQTFLFSATQTKSV 78 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~g--f~~~l~~Il~~lp~~~Q~llfSATl~~~v 78 (564)
++-.|-|+|-+.+.+.+.+. ....+.+++|+||+|..=... +...+...-. . ....+|++|||.|-..
T Consensus 71 g~~~i~vMc~at~~~~~~~p--~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~-~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLLNP--CRLKNYDVIIMDECHFTDPTSIAARGYLRELAE-S-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp SSSSEEEEEHHHHHHHHHTS--SCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH-T-TS-EEEEEESS-TT--
T ss_pred CCCcccccccHHHHHHhcCc--ccccCccEEEEeccccCCHHHHhhheeHHHhhh-c-cCeeEEEEeCCCCCCC
Confidence 46678899999988777663 346899999999999732221 3333333322 2 2467999999988653
No 172
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.14 E-value=0.099 Score=59.09 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHc---CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-c--CC-eEEEec
Q 008461 118 KLDMLWSFIKAH---LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K--RS-VLFCTD 190 (564)
Q Consensus 118 Kl~~L~~~L~~~---~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~--~~-VLVaTd 190 (564)
|+..++..+... .+.+++|...=......+...+.. .|+....+||.....+|..+++.|.. + .. .|++-.
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~--~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLt 807 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQK--GGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLT 807 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhh--CCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEc
Confidence 445555444433 234444433223333344445554 37888999999999999999999987 3 33 566677
Q ss_pred ccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEE
Q 008461 191 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 235 (564)
Q Consensus 191 v~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il 235 (564)
..+.|||+ -+.+++|.+|+-|++.-=-|.+-|.-|+|..-.+++
T Consensus 808 AGGVGLNL-~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 808 AGGVGLNL-IGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred cCcceeee-cccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 77899999 899999999999999999999999999998765554
No 173
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=94.78 E-value=0.031 Score=56.67 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=31.7
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccC
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD 43 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD 43 (564)
+.++|.|||||||..++.++ .+.++++.+||||=-|
T Consensus 176 ~~~~i~vGTP~Rl~kLle~~-~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 176 TRVHIAVGTPGRLSKLLENG-ALSLSNLKRIVLDWSY 211 (252)
T ss_pred CCceEEEeChHHHHHHHHcC-CCCcccCeEEEEcCCc
Confidence 47899999999999999765 7889999999999754
No 174
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=94.42 E-value=0.091 Score=59.82 Aligned_cols=107 Identities=20% Similarity=0.248 Sum_probs=88.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC----C------------CCCeeeccCCCCHHHHHHHHHHHhc--cC--CeEEEec
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR----P------------GIPLMCLYGRMKQDRRMAIYAQFCE--KR--SVLFCTD 190 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~----~------------gi~v~~lHg~m~~~~R~~i~~~F~~--~~--~VLVaTd 190 (564)
+.++|||..+......+-+.+.+.. + ..+-+.+.|..+...|...+++|.. .. -+|++|-
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 5689999999888888888887642 1 1224567888899999999999998 33 4899999
Q ss_pred ccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeC
Q 008461 191 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238 (564)
Q Consensus 191 v~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~ 238 (564)
...-||++ -+.+-+|.||+.|++.--.|.+-|+-|+|....|+++-.
T Consensus 799 ag~lGinL-Isanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 799 AGSLGINL-ISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred ccccccee-eccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 99999999 778899999999999999999999999998777666543
No 175
>PF13871 Helicase_C_4: Helicase_C-like
Probab=94.04 E-value=0.18 Score=51.91 Aligned_cols=76 Identities=24% Similarity=0.373 Sum_probs=57.5
Q ss_pred HHHHHHhc-cCCeEEEecccccCCCcCCC--------CcEEEEcCCCCCHhhHHHHhcccccCCC-CceEEEEeC---cc
Q 008461 174 AIYAQFCE-KRSVLFCTDVASRGLDFNKA--------VDWVVQVDCPEDVASYIHRVGRTARYNS-GGRSVLFLT---PT 240 (564)
Q Consensus 174 ~i~~~F~~-~~~VLVaTdv~arGLD~pp~--------V~~VI~~d~P~s~~~YiqRiGRtgR~g~-~G~~il~l~---~~ 240 (564)
...+.|.+ ...|+|.|+.++.||-+ .+ -++=|.+.+||+++..+|..|||.|.|. .+..+.++. +.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSl-HAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~g 130 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISL-HADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPG 130 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccch-hccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHH
Confidence 56678999 88999999999999998 53 2345678899999999999999999997 444455554 34
Q ss_pred hHHHHHHHHH
Q 008461 241 EMKMLEKLRE 250 (564)
Q Consensus 241 e~~~l~~L~~ 250 (564)
|..+...+..
T Consensus 131 E~Rfas~va~ 140 (278)
T PF13871_consen 131 ERRFASTVAR 140 (278)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 176
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.99 E-value=0.24 Score=57.46 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=67.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecc-cccCCCcCCCCcEEE
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV-ASRGLDFNKAVDWVV 206 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv-~arGLD~pp~V~~VI 206 (564)
+.+++|.++|+.-+..+++.|..+.+ ++.+..+||+++..+|..++....+ ...|+|+|.. +...+.| ..+.+||
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~-~~l~lvV 388 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEF-HNLGLVI 388 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchh-cccceEE
Confidence 57899999999999999999888754 5789999999999999999999999 8999999974 4446788 8899988
Q ss_pred EcC
Q 008461 207 QVD 209 (564)
Q Consensus 207 ~~d 209 (564)
.=.
T Consensus 389 IDE 391 (681)
T PRK10917 389 IDE 391 (681)
T ss_pred Eec
Confidence 533
No 177
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.70 E-value=0.64 Score=53.99 Aligned_cols=91 Identities=15% Similarity=0.209 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccc
Q 008461 117 QKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS 193 (564)
Q Consensus 117 ~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~a 193 (564)
.|....+..+... .+.++||.++|...+..+++.|+..+ |..+..+||+++..+|..++..... ...|+|+|..+.
T Consensus 174 GKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 174 GKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARF-GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh-CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 4554444333221 26789999999999999999998764 6789999999999999999998888 889999997543
Q ss_pred cCCCcCCCCcEEEEcCC
Q 008461 194 RGLDFNKAVDWVVQVDC 210 (564)
Q Consensus 194 rGLD~pp~V~~VI~~d~ 210 (564)
-+.+ .++.+||.-+.
T Consensus 253 -~~p~-~~l~liVvDEe 267 (679)
T PRK05580 253 -FLPF-KNLGLIIVDEE 267 (679)
T ss_pred -cccc-cCCCEEEEECC
Confidence 2556 67888887664
No 178
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=92.62 E-value=0.19 Score=51.09 Aligned_cols=64 Identities=19% Similarity=0.299 Sum_probs=40.4
Q ss_pred cCCCcEEEEcHHHHH-----HHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCC
Q 008461 6 VNELNILVCTPGRLL-----QHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 75 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl-----~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~ 75 (564)
....+|+|+|...+. .... .+.--+.++||+||+|.+-+. .......+..+. ....+++|||+.
T Consensus 105 ~~~~~vvi~ty~~~~~~~~~~~~~---~l~~~~~~~vIvDEaH~~k~~--~s~~~~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 105 LPKYDVVITTYETLRKARKKKDKE---DLKQIKWDRVIVDEAHRLKNK--DSKRYKALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp CCCSSEEEEEHHHHH--TSTHTTH---HHHTSEEEEEEETTGGGGTTT--TSHHHHHHHCCC-ECEEEEE-SS-S
T ss_pred cccceeeecccccccccccccccc---ccccccceeEEEecccccccc--cccccccccccc-cceEEeeccccc
Confidence 457889999999997 1111 111134889999999998433 233333444454 677899999943
No 179
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.17 E-value=0.46 Score=56.12 Aligned_cols=76 Identities=13% Similarity=0.260 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCC---CCeee-ccCCCCHHHHHHHHHHHhc-cCCeEEEecc
Q 008461 117 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPG---IPLMC-LYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 191 (564)
Q Consensus 117 ~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~g---i~v~~-lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv 191 (564)
.-+..+.++.-...++++++.+||..-|..+++-|..+.+. ..+.. +||.|+..++.+++++|.+ ..+|||+|..
T Consensus 111 TTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 111 TTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred hHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 44566667666677899999999999999999998886422 22222 9999999999999999999 9999999986
Q ss_pred c
Q 008461 192 A 192 (564)
Q Consensus 192 ~ 192 (564)
+
T Consensus 191 F 191 (1187)
T COG1110 191 F 191 (1187)
T ss_pred H
Confidence 5
No 180
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=92.04 E-value=0.62 Score=53.60 Aligned_cols=77 Identities=16% Similarity=0.279 Sum_probs=66.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccc-cCCCcCCCCcEEE
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS-RGLDFNKAVDWVV 206 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~a-rGLD~pp~V~~VI 206 (564)
+.+++|.++|+.-+..+++.+..+.+ |+.+..+||+++..+|..++....+ ...|+|+|...- ..+.| ..+.+||
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~-~~l~lvV 362 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEF-KRLALVI 362 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccc-cccceEE
Confidence 57899999999999999999988765 6889999999999999999999998 899999998654 35788 7888888
Q ss_pred Ec
Q 008461 207 QV 208 (564)
Q Consensus 207 ~~ 208 (564)
.=
T Consensus 363 ID 364 (630)
T TIGR00643 363 ID 364 (630)
T ss_pred Ee
Confidence 53
No 181
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.87 E-value=0.86 Score=51.03 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=64.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVD 209 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d 209 (564)
+.++||.+++...+..+++.|+..+ +..+..+||+++..+|..++..... ...|+|+|..+.- +-+ +++.+||.-+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f-~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~-~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF-GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPF-KNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh-CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-Ccc-cCCCEEEEEC
Confidence 6789999999999999999998764 6778999999999999999988888 8899999986542 456 6788888655
No 182
>PRK14873 primosome assembly protein PriA; Provisional
Probab=91.26 E-value=0.88 Score=52.60 Aligned_cols=93 Identities=17% Similarity=0.083 Sum_probs=74.7
Q ss_pred ccHHHHHHHHHHHcC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc
Q 008461 116 EQKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 192 (564)
Q Consensus 116 ~~Kl~~L~~~L~~~~--~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~ 192 (564)
..|....+.++.... ++++||.++....+..+...|+..+++..+..+|++++..+|...+....+ ...|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 356666666665432 678999999999999999999988754779999999999999999999988 88999999865
Q ss_pred ccCCCcCCCCcEEEEcCC
Q 008461 193 SRGLDFNKAVDWVVQVDC 210 (564)
Q Consensus 193 arGLD~pp~V~~VI~~d~ 210 (564)
. =+=| ++..+||..+-
T Consensus 251 v-FaP~-~~LgLIIvdEE 266 (665)
T PRK14873 251 V-FAPV-EDLGLVAIWDD 266 (665)
T ss_pred E-Eecc-CCCCEEEEEcC
Confidence 3 3344 55677877663
No 183
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=91.08 E-value=0.19 Score=62.29 Aligned_cols=93 Identities=19% Similarity=0.324 Sum_probs=71.6
Q ss_pred EEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCC-----------HHHHHHHHHHHhc-cCCeEEEecccccCCCcCCC
Q 008461 134 ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK-----------QDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA 201 (564)
Q Consensus 134 ~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~-----------~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~ 201 (564)
.|+|+.-...+..+++.++... ...+..+-|.+. +..+.+++..|.. ...+|++|.++..|+|+ |.
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~-~~ 372 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIF-SNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDV-PK 372 (1606)
T ss_pred heeecccchHHHHHHHHHHHhh-ccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcch-hh
Confidence 5677877777777777766542 111222333221 3346789999999 99999999999999999 89
Q ss_pred CcEEEEcCCCCCHhhHHHHhcccccCC
Q 008461 202 VDWVVQVDCPEDVASYIHRVGRTARYN 228 (564)
Q Consensus 202 V~~VI~~d~P~s~~~YiqRiGRtgR~g 228 (564)
++.|+.++.|.....|+|+.||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999996654
No 184
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=90.94 E-value=1 Score=53.93 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=66.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCC--CCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecc-cccCCCcCCCCcEEE
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPG--IPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV-ASRGLDFNKAVDWVV 206 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~g--i~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv-~arGLD~pp~V~~VI 206 (564)
+.+++|.++|...|...++.|..+..+ +.+..++|..+..++..++..+.. ...|+|+|.. +...+.| .++.+||
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f-~~L~llV 578 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKF-KDLGLLI 578 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCc-ccCCEEE
Confidence 578999999999999999999886554 567889999999999999999998 8999999984 4556888 8899888
Q ss_pred EcC
Q 008461 207 QVD 209 (564)
Q Consensus 207 ~~d 209 (564)
.=.
T Consensus 579 IDE 581 (926)
T TIGR00580 579 IDE 581 (926)
T ss_pred eec
Confidence 633
No 185
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=90.92 E-value=0.071 Score=62.62 Aligned_cols=142 Identities=20% Similarity=0.203 Sum_probs=78.4
Q ss_pred cCCCcEEEEcHHHHHHHHhcCC-CCCCCCcceEEEeccCccCcccHHHHHHHHH-------HhCCCCCcEEEEeccCChh
Q 008461 6 VNELNILVCTPGRLLQHMDETP-NFDCSQLQILILDEADRILDVGFKKALNAIV-------SQLPKHRQTFLFSATQTKS 77 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~-~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il-------~~lp~~~Q~llfSATl~~~ 77 (564)
+...+|+|+||.+.-.+..+.. .-.++++..+|+||.|.+.+. .++.+..|. ...++..|.+++|.-+. .
T Consensus 1018 v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~-n 1095 (1230)
T KOG0952|consen 1018 VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISSQTEEPVRYLGLSTALA-N 1095 (1230)
T ss_pred eecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCccccCcchhhhhHhhhhh-c
Confidence 3567899999999977766322 123689999999999987654 333333332 23344455555544333 3
Q ss_pred HHHHHHHhcCCCCcccccccccccCCccceeEEE------EcCc-ccHHHHHHHHHHHcC-CCcEEEEeCChHHHHHHHH
Q 008461 78 VQDLARLSLKDPQYLSVHEESVTATPNRLQQTAM------IVPL-EQKLDMLWSFIKAHL-NSKILVFLTSCKQVKYVFE 149 (564)
Q Consensus 78 v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~------~~~~-~~Kl~~L~~~L~~~~-~~k~IVF~~t~k~v~~l~e 149 (564)
..+++.+....+.+ .... ...|..+..++- .|+. .......+..++.+. ..++|||++++++..+-+.
T Consensus 1096 a~dla~wl~~~~~~-nf~~---svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~ 1171 (1230)
T KOG0952|consen 1096 ANDLADWLNIKDMY-NFRP---SVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTAL 1171 (1230)
T ss_pred cHHHHHHhCCCCcC-CCCc---ccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchH
Confidence 45666665544441 1100 011111111111 1121 112223344555554 6899999999998887766
Q ss_pred HHHh
Q 008461 150 AFKK 153 (564)
Q Consensus 150 ~L~~ 153 (564)
.|-.
T Consensus 1172 ~li~ 1175 (1230)
T KOG0952|consen 1172 DLIA 1175 (1230)
T ss_pred hHHh
Confidence 5543
No 186
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.58 E-value=1.2 Score=54.58 Aligned_cols=77 Identities=13% Similarity=0.215 Sum_probs=64.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec-ccccCCCcCCCCcEE
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-VASRGLDFNKAVDWV 205 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd-v~arGLD~pp~V~~V 205 (564)
.+.+++|.++|+..+..++..|..... ++.+..++|..+..++..++..+.. ...|+|+|. ++...+.+ ..+.+|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~-~~L~lL 726 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKW-KDLGLL 726 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCH-hhCCEE
Confidence 367899999999999999999987544 3567889999999999999999988 889999996 44556777 788888
Q ss_pred EE
Q 008461 206 VQ 207 (564)
Q Consensus 206 I~ 207 (564)
|.
T Consensus 727 VI 728 (1147)
T PRK10689 727 IV 728 (1147)
T ss_pred EE
Confidence 85
No 187
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.51 E-value=1.2 Score=50.05 Aligned_cols=70 Identities=20% Similarity=0.398 Sum_probs=57.3
Q ss_pred EEEEeCChHHHHHHHHHHHhhCC---CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----ccccC-CCcCCCCcE
Q 008461 134 ILVFLTSCKQVKYVFEAFKKLRP---GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAVDW 204 (564)
Q Consensus 134 ~IVF~~t~k~v~~l~e~L~~l~~---gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~arG-LD~pp~V~~ 204 (564)
+||+++|+..|..+++.+..+.. ++.+..++||++...+...+.. ...|||||+ .+.+| +++ ..|.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~~~ivVaTPGRllD~i~~~~l~l-~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---GVDIVVATPGRLLDLIKRGKLDL-SGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---CCCEEEECccHHHHHHHcCCcch-hhcCE
Confidence 99999999999999999887643 5678999999988766644443 688999998 56666 888 88999
Q ss_pred EEE
Q 008461 205 VVQ 207 (564)
Q Consensus 205 VI~ 207 (564)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 986
No 188
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=89.45 E-value=0.16 Score=59.65 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=33.3
Q ss_pred CCCcEEEEcHHHH-HHHHhcCCCCCC-----CCcceEEEeccCccCc
Q 008461 7 NELNILVCTPGRL-LQHMDETPNFDC-----SQLQILILDEADRILD 47 (564)
Q Consensus 7 ~~~~ILV~TPgrL-l~~L~~~~~~~~-----~~L~~lVlDEAD~lld 47 (564)
-.++|++|||++| +++|..+-.++. +.+.++|+||||.+|-
T Consensus 170 Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 170 YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 4799999999999 888876633443 7889999999998763
No 189
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=88.88 E-value=0.47 Score=49.30 Aligned_cols=73 Identities=18% Similarity=0.363 Sum_probs=45.2
Q ss_pred CCcEEEEcHHHHHHHHhcC----CCCC-----C-CCc-ceEEEeccCccCcccH--------HHHHHHHHHhCCCCCcEE
Q 008461 8 ELNILVCTPGRLLQHMDET----PNFD-----C-SQL-QILILDEADRILDVGF--------KKALNAIVSQLPKHRQTF 68 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~----~~~~-----~-~~L-~~lVlDEAD~lld~gf--------~~~l~~Il~~lp~~~Q~l 68 (564)
.-.||.+|...|...-... ..+. | .++ .+|||||+|..-...- ...+..+-..+| +.+++
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvv 214 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVV 214 (303)
T ss_pred CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEE
Confidence 3468999988876553211 0100 0 122 4899999998765432 245566677787 55699
Q ss_pred EEeccCChhHHHH
Q 008461 69 LFSATQTKSVQDL 81 (564)
Q Consensus 69 lfSATl~~~v~~l 81 (564)
.+|||-......+
T Consensus 215 Y~SATgasep~Nm 227 (303)
T PF13872_consen 215 YASATGASEPRNM 227 (303)
T ss_pred EecccccCCCcee
Confidence 9999966554433
No 190
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.05 E-value=14 Score=42.38 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=57.4
Q ss_pred ccHHHHHHHHHHH---cCCCcEEEEeCChHHHHHHHHHHHhh-----CCCCCeeeccCCCCHHHHHHHHHHHhc-----c
Q 008461 116 EQKLDMLWSFIKA---HLNSKILVFLTSCKQVKYVFEAFKKL-----RPGIPLMCLYGRMKQDRRMAIYAQFCE-----K 182 (564)
Q Consensus 116 ~~Kl~~L~~~L~~---~~~~k~IVF~~t~k~v~~l~e~L~~l-----~~gi~v~~lHg~m~~~~R~~i~~~F~~-----~ 182 (564)
..-+..|..++.+ ..++-++||++|..-...++..+.+- ..+..-..+-.... -..++..|.. .
T Consensus 611 ~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~ 687 (821)
T KOG1133|consen 611 PEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGR 687 (821)
T ss_pred hHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCC
Confidence 3444445444443 44789999999988777777776641 01122222333323 3456777755 2
Q ss_pred CCeEEEe--cccccCCCcCCC--CcEEEEcCCCC
Q 008461 183 RSVLFCT--DVASRGLDFNKA--VDWVVQVDCPE 212 (564)
Q Consensus 183 ~~VLVaT--dv~arGLD~pp~--V~~VI~~d~P~ 212 (564)
..+|+|- --++.|||| .+ +++||.+++|.
T Consensus 688 GaiLlaVVGGKlSEGINF-~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 688 GAILLAVVGGKLSEGINF-SDDLGRAVVVVGLPY 720 (821)
T ss_pred CeEEEEEecccccccccc-ccccccEEEEeecCC
Confidence 3577764 346899999 44 78999999985
No 191
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=87.65 E-value=2.1 Score=49.30 Aligned_cols=73 Identities=23% Similarity=0.362 Sum_probs=54.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhh---CCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----ccccC-CCcCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKL---RPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKA 201 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l---~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~arG-LD~pp~ 201 (564)
..++||.|+|+..+..+++.+..+ .+++.+..+||+++...+... +.....|+|+|. .+.++ +++ ..
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~---l~~~~~IVVgTPgrl~d~l~r~~l~l-~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA---LRQGPQIVVGTPGRLLDHLKRGTLDL-SK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHH---hcCCCCEEEECHHHHHHHHHcCCcch-hh
Confidence 458999999999999998876654 368889999999876544332 233678999994 44444 788 78
Q ss_pred CcEEEE
Q 008461 202 VDWVVQ 207 (564)
Q Consensus 202 V~~VI~ 207 (564)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888885
No 192
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.46 E-value=12 Score=41.98 Aligned_cols=188 Identities=16% Similarity=0.252 Sum_probs=109.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCC--eeeccCCCCHHHHHHHHHHHhccCCeEEEec-----ccccC-CCcCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIP--LMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAV 202 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~--v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~arG-LD~pp~V 202 (564)
...+||.++|+..+..++..+.....+.. ..|++|+.+..... ....+...|+|||. .+..| +|+ ..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~---~~l~~gvdiviaTPGRl~d~le~g~~~l-~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQL---RDLERGVDVVIATPGRLIDLLEEGSLNL-SRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHH---HHHhcCCcEEEeCChHHHHHHHcCCccc-cce
Confidence 34699999999999999999888754444 89999998865432 23333678999997 45555 788 788
Q ss_pred cEEEE--------cCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH-HHHHHHHcCCCccccccc-cccchhHHHHH
Q 008461 203 DWVVQ--------VDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK-MLEKLREAKIPIHFTKAN-TKRLQPVSGLL 272 (564)
Q Consensus 203 ~~VI~--------~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~-~l~~L~~~~i~i~~~~~~-~~~~~~i~~~l 272 (564)
.++|. .++-..+...++.++|+-| .-..+...-|.+.. +-..+...-+.+.....+ .....++. ++
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r---Qtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~-qi 316 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR---QTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIR-QI 316 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc---cEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchh-hh
Confidence 88885 4455678889999998877 22333334455555 222232222222222221 11112222 22
Q ss_pred HHHHhcChhHHHHHH-HHHHHHHHHHhc-cccc-ccccccCCCHHHHHHhcCCCCCCcccccc
Q 008461 273 AALLVKYPDMQHRAQ-KAFITYLRSVHI-QKDK-EVFDVTKLSIDEFSASLGLPMTPKIRFLN 332 (564)
Q Consensus 273 ~~~~~~~~~l~~~a~-~af~sy~rs~~~-~~~k-~if~~~~l~l~~~A~s~GL~~~P~i~~~~ 332 (564)
...|. + .+. +-....++.++. ...| -||--.+...++++..+.-..-|.+.+-.
T Consensus 317 ve~~~---~---~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHG 373 (519)
T KOG0331|consen 317 VEVCD---E---TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHG 373 (519)
T ss_pred hhhcC---H---HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecc
Confidence 21121 1 111 123345555552 2222 46777777788888876655555555543
No 193
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=87.26 E-value=3.9 Score=39.17 Aligned_cols=74 Identities=19% Similarity=0.358 Sum_probs=53.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----ccccC-CCcCCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKA 201 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~arG-LD~pp~ 201 (564)
.+.++||.++|...+......+.... .++.+..++|+.+...+... +.....|+|+|. .+.++ .++ +.
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~l~~~~~~~-~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK---LKRGPHIVVATPGRLLDLLERGKLDL-SK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hcCCCCEEEEChHHHHHHHHcCCCCh-hh
Confidence 45689999999999998888776653 36778889999887655432 224678999995 22233 566 67
Q ss_pred CcEEEE
Q 008461 202 VDWVVQ 207 (564)
Q Consensus 202 V~~VI~ 207 (564)
+++||.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 888774
No 194
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=86.34 E-value=1.8 Score=43.70 Aligned_cols=87 Identities=9% Similarity=0.155 Sum_probs=65.6
Q ss_pred CCCeeeccCCCCHHHHHHHHHHHhc-c----CCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccc-cCCCC
Q 008461 157 GIPLMCLYGRMKQDRRMAIYAQFCE-K----RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTA-RYNSG 230 (564)
Q Consensus 157 gi~v~~lHg~m~~~~R~~i~~~F~~-~----~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtg-R~g~~ 230 (564)
++.+..++++.+... -.|.. . ..|+|.=+.++||+-| ++........-|...++++||.=--| |.|-.
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTl-eGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~ 183 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTL-EGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYE 183 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeE-CCcEEEEecCCCchHHHHHHHhhcccCCcccc
Confidence 377777776554432 33444 2 6799999999999999 99998888899999999999876566 66667
Q ss_pred ceEEEEeCcchHHHHHHHH
Q 008461 231 GRSVLFLTPTEMKMLEKLR 249 (564)
Q Consensus 231 G~~il~l~~~e~~~l~~L~ 249 (564)
+.|=+++++.-...+..+.
T Consensus 184 dl~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 184 DLCRIYMPEELYDWFRHIA 202 (239)
T ss_pred cceEEecCHHHHHHHHHHH
Confidence 8888888876555555543
No 195
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=85.13 E-value=3.2 Score=45.66 Aligned_cols=76 Identities=17% Similarity=0.279 Sum_probs=56.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhh---CCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----cccc-CCCcCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKL---RPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASR-GLDFNKA 201 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l---~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~ar-GLD~pp~ 201 (564)
..++||.++|+..+..+++.++.+ .+++.+..++|+.+...+.. .+.....|+|||. .+.+ .+++ ..
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~---~l~~~~~IvV~Tp~rl~~~l~~~~~~l-~~ 147 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQID---SLEHGAHIIVGTPGRILDHLRKGTLDL-DA 147 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHH---HhcCCCCEEEEChHHHHHHHHcCCccH-HH
Confidence 347999999999999999888765 24678899999998765543 2334678999994 4443 5788 88
Q ss_pred CcEEEEcCC
Q 008461 202 VDWVVQVDC 210 (564)
Q Consensus 202 V~~VI~~d~ 210 (564)
+.+||.=++
T Consensus 148 l~~lViDEa 156 (460)
T PRK11776 148 LNTLVLDEA 156 (460)
T ss_pred CCEEEEECH
Confidence 999986443
No 196
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=84.58 E-value=2.5 Score=49.23 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=73.7
Q ss_pred cCcccHHHHHHHHHHHcC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEe
Q 008461 113 VPLEQKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 189 (564)
Q Consensus 113 ~~~~~Kl~~L~~~L~~~~--~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaT 189 (564)
+.-..|.+..+.++.... ++.+||.++-......+...|+..+ |.++..+|+++++.+|..+..+..+ ...|+|.|
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rF-g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARF-GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHh-CCChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 344567777777776543 6799999999999999999998875 6899999999999999999999999 99999999
Q ss_pred cccccCCCcCCCCcEEEE
Q 008461 190 DVASRGLDFNKAVDWVVQ 207 (564)
Q Consensus 190 dv~arGLD~pp~V~~VI~ 207 (564)
-.+- =.=| ++.-+||.
T Consensus 304 RSAl-F~Pf-~~LGLIIv 319 (730)
T COG1198 304 RSAL-FLPF-KNLGLIIV 319 (730)
T ss_pred chhh-cCch-hhccEEEE
Confidence 8542 3344 45566665
No 197
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=82.91 E-value=1.2 Score=44.00 Aligned_cols=33 Identities=30% Similarity=0.582 Sum_probs=29.0
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEe
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILD 40 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlD 40 (564)
+.+++-||||||+.++..++ .|.+.++.+||||
T Consensus 195 ~~v~~gIgTp~Ri~~lv~~~-~f~~~~lk~iIlD 227 (271)
T KOG3089|consen 195 RVVHLGIGTPGRIKELVKQG-GFNLSPLKFIILD 227 (271)
T ss_pred cceeEeecCcHHHHHHHHhc-CCCCCcceeEEee
Confidence 45788999999999888876 5999999999998
No 198
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=82.65 E-value=3.8 Score=50.50 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=51.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CCC---eeeccCCCCHHHHHHHHHHHhc-cCCeEEEecc
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GIP---LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 191 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~---v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv 191 (564)
+.++||.+||+..+..+++.|..+.. ++. ++.+||+++..++...+..+.+ ...|||+|.-
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 67899999999999999998887643 233 3468999999999999999988 7999999984
No 199
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=82.62 E-value=1.3 Score=50.84 Aligned_cols=42 Identities=29% Similarity=0.255 Sum_probs=32.8
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcc
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV 48 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~ 48 (564)
....+|||++..-|+.++..... -+...+++||||||++.+.
T Consensus 180 a~~AdivItNHalL~~~~~~~~~-iLP~~~~lIiDEAH~L~d~ 221 (636)
T TIGR03117 180 ARRCRILFCTHAMLGLAFRDKWG-LLPQPDILIVDEAHLFEQN 221 (636)
T ss_pred cccCCEEEECHHHHHHHhhhhcC-CCCCCCEEEEeCCcchHHH
Confidence 56889999999988876644322 3466899999999998754
No 200
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=82.46 E-value=3.8 Score=45.79 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=26.5
Q ss_pred CCCCCCCcceeccccccccccchhhhhhhhhhhhcccccccc
Q 008461 368 EENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINV 409 (564)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 409 (564)
.++.++||+.|||++|-. -..+..+||++.|++++|.
T Consensus 566 ~ek~d~~~~svkk~~k~~-----~tKva~aKKa~~k~~kvns 602 (758)
T KOG0343|consen 566 AEKEDNDFISVKKKDKKR-----VTKVALAKKALKKNLKVNS 602 (758)
T ss_pred hhcccCCCceeccchhhh-----HHHHHHHHHHHHHhhccCc
Confidence 445578999999999821 1235677888888887763
No 201
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=82.40 E-value=16 Score=33.41 Aligned_cols=74 Identities=12% Similarity=0.276 Sum_probs=53.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHH-HHHHHHHHHhccCCeEEEeccc------ccCCCcCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQD-RRMAIYAQFCEKRSVLFCTDVA------SRGLDFNK 200 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~-~R~~i~~~F~~~~~VLVaTdv~------arGLD~pp 200 (564)
...++||.+++...++.++..+..... ++.+..+||+.+.. .....+ .....|+|+|.-. ...+++ .
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ilv~T~~~l~~~~~~~~~~~-~ 118 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL---SNQADILVTTPEQLLDLISNGKINI-S 118 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH---HTTSSEEEEEHHHHHHHHHTTSSTG-T
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc---cccccccccCcchhhcccccccccc-c
Confidence 345999999999999999999988754 46788899998854 222222 2378999999732 334577 5
Q ss_pred CCcEEEE
Q 008461 201 AVDWVVQ 207 (564)
Q Consensus 201 ~V~~VI~ 207 (564)
.+++||.
T Consensus 119 ~~~~iVi 125 (169)
T PF00270_consen 119 RLSLIVI 125 (169)
T ss_dssp TESEEEE
T ss_pred cceeecc
Confidence 6787775
No 202
>PRK14701 reverse gyrase; Provisional
Probab=81.81 E-value=4.6 Score=51.37 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=53.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhC----CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecc
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLR----PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 191 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~----~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv 191 (564)
.+.++||.+||+..+..++..|..+. .++.+..+||+++..++..+++.+.+ ...|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 35689999999999999999888753 24677899999999999999999988 7999999984
No 203
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=81.48 E-value=0.96 Score=46.86 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=31.5
Q ss_pred cccCCCcEEEEcHHHHHHHHhcCC-CCCCCCcceEEEeccCccCcc
Q 008461 4 EHVNELNILVCTPGRLLQHMDETP-NFDCSQLQILILDEADRILDV 48 (564)
Q Consensus 4 ~r~~~~~ILV~TPgrLl~~L~~~~-~~~~~~L~~lVlDEAD~lld~ 48 (564)
......+|||++..-|++...... ...+ .-.+|||||||.|.+.
T Consensus 207 ~~~~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d~ 251 (289)
T smart00489 207 KAIEFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDNV 251 (289)
T ss_pred HHhhcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHHH
Confidence 345689999999999887664321 2233 3579999999998653
No 204
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=81.48 E-value=0.96 Score=46.86 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=31.5
Q ss_pred cccCCCcEEEEcHHHHHHHHhcCC-CCCCCCcceEEEeccCccCcc
Q 008461 4 EHVNELNILVCTPGRLLQHMDETP-NFDCSQLQILILDEADRILDV 48 (564)
Q Consensus 4 ~r~~~~~ILV~TPgrLl~~L~~~~-~~~~~~L~~lVlDEAD~lld~ 48 (564)
......+|||++..-|++...... ...+ .-.+|||||||.|.+.
T Consensus 207 ~~~~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d~ 251 (289)
T smart00488 207 KAIEFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDNV 251 (289)
T ss_pred HHhhcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHHH
Confidence 345689999999999887664321 2233 3579999999998653
No 205
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=80.85 E-value=6.3 Score=45.76 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=51.9
Q ss_pred HHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc---cCCeEEEecccccC
Q 008461 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTDVASRG 195 (564)
Q Consensus 127 ~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~---~~~VLVaTdv~arG 195 (564)
....++|-||.|++.---.++. .|.++.|.+.|..+|| +|.+|..+-..+.. ..+|||+|--++.|
T Consensus 444 q~g~~gpHLVVvPsSTleNWlr-Ef~kwCPsl~Ve~YyG--Sq~ER~~lR~~i~~~~~~ydVllTTY~la~~ 512 (941)
T KOG0389|consen 444 QIGNPGPHLVVVPSSTLENWLR-EFAKWCPSLKVEPYYG--SQDERRELRERIKKNKDDYDVLLTTYNLAAS 512 (941)
T ss_pred HcCCCCCcEEEecchhHHHHHH-HHHHhCCceEEEeccC--cHHHHHHHHHHHhccCCCccEEEEEeecccC
Confidence 3344788999999876655554 5677889999999999 56899999999987 57899999866544
No 206
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=80.65 E-value=16 Score=40.55 Aligned_cols=179 Identities=16% Similarity=0.254 Sum_probs=95.1
Q ss_pred CCcE-EEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec------ccccCCCcCCC
Q 008461 131 NSKI-LVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD------VASRGLDFNKA 201 (564)
Q Consensus 131 ~~k~-IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd------v~arGLD~pp~ 201 (564)
.+|+ +|.|+|+..+..++...++.. -|+.+.++|||++..+...-++ ...-++|||. +--.|+|| ..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~g~EivVaTPgRlid~VkmKatn~-~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---EGAEIVVATPGRLIDMVKMKATNL-SR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---cCCeEEEechHHHHHHHHhhcccc-ee
Confidence 4565 455699888877776655431 3788999999999876544433 4677999998 33457888 78
Q ss_pred CcEEEEcCCC--------CCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHHHHc--CCCcccccccccc-chhHHH
Q 008461 202 VDWVVQVDCP--------EDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA--KIPIHFTKANTKR-LQPVSG 270 (564)
Q Consensus 202 V~~VI~~d~P--------~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~--~i~i~~~~~~~~~-~~~i~~ 270 (564)
|.+.|.=..- .-+.+..|-+ |.. -.+++|-..-- ..+..|.+. .-|+..+...... -..|.
T Consensus 371 vS~LV~DEadrmfdmGfe~qVrSI~~hi----rpd--rQtllFsaTf~-~kIe~lard~L~dpVrvVqg~vgean~dIT- 442 (731)
T KOG0339|consen 371 VSYLVLDEADRMFDMGFEPQVRSIKQHI----RPD--RQTLLFSATFK-KKIEKLARDILSDPVRVVQGEVGEANEDIT- 442 (731)
T ss_pred eeEEEEechhhhhccccHHHHHHHHhhc----CCc--ceEEEeeccch-HHHHHHHHHHhcCCeeEEEeehhccccchh-
Confidence 8888753221 1233333333 222 23455543322 233333332 2233322221111 11222
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHhcCCCCC
Q 008461 271 LLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMT 325 (564)
Q Consensus 271 ~l~~~~~~~~~l~~~a~~af~sy~rs~~~~~~k~if~~~~l~l~~~A~s~GL~~~ 325 (564)
+....|.+.+.-..+--+..+++ .....--+|--++.+.++++.-|-|.+-
T Consensus 443 Q~V~V~~s~~~Kl~wl~~~L~~f----~S~gkvlifVTKk~~~e~i~a~Lklk~~ 493 (731)
T KOG0339|consen 443 QTVSVCPSEEKKLNWLLRHLVEF----SSEGKVLIFVTKKADAEEIAANLKLKGF 493 (731)
T ss_pred heeeeccCcHHHHHHHHHHhhhh----ccCCcEEEEEeccCCHHHHHHHhccccc
Confidence 22233433333222222222222 2222335788888999999998877654
No 207
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=79.27 E-value=3.6 Score=45.91 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=47.5
Q ss_pred EEEEeCChHHHHHHHHHHHhh--CCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec
Q 008461 134 ILVFLTSCKQVKYVFEAFKKL--RPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 190 (564)
Q Consensus 134 ~IVF~~t~k~v~~l~e~L~~l--~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd 190 (564)
.|||++|+..|..+...|... .+++.++.+-|||.......+++. ...|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~---~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ---RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc---CCCEEEecc
Confidence 899999999999999988775 368899999999999888877766 678999998
No 208
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=78.90 E-value=0.7 Score=43.85 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=27.6
Q ss_pred ccCCCcEEEEcHHHHHHHHhcCC--CCCCCCcceEEEeccCccCcc
Q 008461 5 HVNELNILVCTPGRLLQHMDETP--NFDCSQLQILILDEADRILDV 48 (564)
Q Consensus 5 r~~~~~ILV~TPgrLl~~L~~~~--~~~~~~L~~lVlDEAD~lld~ 48 (564)
.....+|||++..-|++-..... .+.+ +-.+|||||||.|.+.
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~~-~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGIDL-KDNIVIFDEAHNLEDA 160 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT--C-CCEEEEETTGGGCGGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhccccc-cCcEEEEecccchHHH
Confidence 44578999999988765433221 1223 3368999999998764
No 209
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=76.97 E-value=12 Score=43.05 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=68.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc-ccCCCcCCCCcEEE
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA-SRGLDFNKAVDWVV 206 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~-arGLD~pp~V~~VI 206 (564)
+.++.+-++|.=-++..|..|..+++ |+.+..+-|.+....|.++++...+ ...|+|.|-++ -..+.| .+.-+||
T Consensus 311 G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F-~~LgLVI 389 (677)
T COG1200 311 GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEF-HNLGLVI 389 (677)
T ss_pred CCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceee-cceeEEE
Confidence 67999999999999999999888765 7889999999999999999999999 89999999976 567999 7788887
Q ss_pred E
Q 008461 207 Q 207 (564)
Q Consensus 207 ~ 207 (564)
.
T Consensus 390 i 390 (677)
T COG1200 390 I 390 (677)
T ss_pred E
Confidence 4
No 210
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=76.44 E-value=9 Score=41.69 Aligned_cols=75 Identities=13% Similarity=0.297 Sum_probs=55.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec------ccccCCCcCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD------VASRGLDFNKAV 202 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd------v~arGLD~pp~V 202 (564)
..++||.++|+..+..+++.+..+. .++.+..++|+.....+..++ .....|||||. +....+++ ..+
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---~~~~~IlV~Tp~rl~~~~~~~~~~~-~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF---SENQDIVVATPGRLLQYIKEENFDC-RAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh---cCCCCEEEEChHHHHHHHHcCCcCc-ccC
Confidence 3579999999999999888777653 467889999998876654332 23678999997 22345778 788
Q ss_pred cEEEEcC
Q 008461 203 DWVVQVD 209 (564)
Q Consensus 203 ~~VI~~d 209 (564)
++||.=+
T Consensus 149 ~~lViDE 155 (434)
T PRK11192 149 ETLILDE 155 (434)
T ss_pred CEEEEEC
Confidence 8888644
No 211
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=75.09 E-value=22 Score=41.34 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=80.1
Q ss_pred EEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeec-------------------------c
Q 008461 110 AMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL-------------------------Y 164 (564)
Q Consensus 110 ~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~l-------------------------H 164 (564)
..-+....|-..+..++... +.++||.+++...+..+|..|+.++|.-.|..+ .
T Consensus 34 l~Gvtgs~kt~~~a~~~~~~-~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~ 112 (655)
T TIGR00631 34 LLGVTGSGKTFTMANVIAQV-NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASI 112 (655)
T ss_pred EECCCCcHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCC
Confidence 33445556777777777654 689999999999999999999998777545544 1
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCC----CCcEEEEcCCCCCHhhHHHHhcccc
Q 008461 165 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK----AVDWVVQVDCPEDVASYIHRVGRTA 225 (564)
Q Consensus 165 g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp----~V~~VI~~d~P~s~~~YiqRiGRtg 225 (564)
+.--...|..++..+.. ...|+|||-.+-.|+=- | ...+.+..+-..+.+.++.+.-..|
T Consensus 113 ~~~i~~~R~~al~~L~~~~~~ivVasv~~i~~l~~-p~~~~~~~~~l~~G~~i~~~~l~~~Lv~~g 177 (655)
T TIGR00631 113 NDEIERLRHSATRSLLERRDVIVVASVSCIYGLGS-PEEYLKMVLHLEVGKEIDRRELLRRLVELQ 177 (655)
T ss_pred ChHHHHHHHHHHHHHHhCCCeEEEEcHHHhcCCCC-HHHHHhccEEEeCCCCcCHHHHHHHHHHcC
Confidence 22224568888888877 55677777666666642 3 3567777787778888777664443
No 212
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=73.05 E-value=0.66 Score=53.54 Aligned_cols=99 Identities=18% Similarity=0.166 Sum_probs=82.9
Q ss_pred cEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc---cCCeEEEecccccCCCcCCCCcEEEEcC
Q 008461 133 KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTDVASRGLDFNKAVDWVVQVD 209 (564)
Q Consensus 133 k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~---~~~VLVaTdv~arGLD~pp~V~~VI~~d 209 (564)
++|||..-..-...+..-+.. .++....+-|.|....|...+..|.. ....|++.-+..-|+++ -...+|+..|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~--~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnl-t~a~~v~~~d 617 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFF--KGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNL-TAASHVLLMD 617 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhh--cccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhch-hhhhHHHhhc
Confidence 899998877776666665553 47888889999999999999999998 23477889999999999 6799999999
Q ss_pred CCCCHhhHHHHhcccccCCCCceEE
Q 008461 210 CPEDVASYIHRVGRTARYNSGGRSV 234 (564)
Q Consensus 210 ~P~s~~~YiqRiGRtgR~g~~G~~i 234 (564)
+-+++..--|.+-|+-|-|..-.+.
T Consensus 618 ~~wnp~~eeQaidR~hrigq~k~v~ 642 (674)
T KOG1001|consen 618 PWWNPAVEEQAIDRAHRIGQTKPVK 642 (674)
T ss_pred hhcChHHHHHHHHHHHHhcccceee
Confidence 9999999999999999998754433
No 213
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=72.95 E-value=9.9 Score=43.31 Aligned_cols=72 Identities=14% Similarity=0.255 Sum_probs=53.1
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----cccc--CCCcCCCC
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASR--GLDFNKAV 202 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~ar--GLD~pp~V 202 (564)
.++||.++|+..+..+++.+..+. .++.+..+||+.+.......+ .....|||+|. .+.+ .+++ ..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l---~~~~dIiV~TP~rL~~~l~~~~~~~l-~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELL---QQGVDVIIATPGRLIDYVKQHKVVSL-HAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHH---hCCCCEEEECHHHHHHHHHhccccch-hhe
Confidence 589999999999999999887753 356788999998876554333 23678999995 3333 3677 678
Q ss_pred cEEEE
Q 008461 203 DWVVQ 207 (564)
Q Consensus 203 ~~VI~ 207 (564)
.+||.
T Consensus 161 ~~lVi 165 (572)
T PRK04537 161 EICVL 165 (572)
T ss_pred eeeEe
Confidence 87775
No 214
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.22 E-value=27 Score=39.76 Aligned_cols=71 Identities=23% Similarity=0.302 Sum_probs=41.7
Q ss_pred CCCcEEEEcHHHHHHHHhcCC--CC---CCCCcce-EEEeccCccCccc---------HHHHHHHHHH-hC--CCCCcEE
Q 008461 7 NELNILVCTPGRLLQHMDETP--NF---DCSQLQI-LILDEADRILDVG---------FKKALNAIVS-QL--PKHRQTF 68 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~--~~---~~~~L~~-lVlDEAD~lld~g---------f~~~l~~Il~-~l--p~~~Q~l 68 (564)
..++|..+|-..|...+.+.. .+ ++.+..+ ++-||||+|-... -...+...+. .+ .++.-++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~l 159 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLL 159 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceee
Confidence 468899999999976665432 11 2445554 4679999985432 1111222211 11 2345677
Q ss_pred EEeccCChh
Q 008461 69 LFSATQTKS 77 (564)
Q Consensus 69 lfSATl~~~ 77 (564)
.||||.|..
T Consensus 160 ef~at~~k~ 168 (812)
T COG3421 160 EFSATIPKE 168 (812)
T ss_pred hhhhcCCcc
Confidence 899999954
No 215
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=71.52 E-value=4 Score=49.22 Aligned_cols=68 Identities=21% Similarity=0.361 Sum_probs=46.1
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEecc-CChhHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT-QTKSVQD 80 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSAT-l~~~v~~ 80 (564)
+.+||.|++.-.+++-+. .|.-.+.+|+||||||.+-.|. ...+.+++..- ..+.+|++.| +-+++-.
T Consensus 714 naFHVCItSYklv~qd~~---AFkrkrWqyLvLDEaqnIKnfk-sqrWQAllnfn--sqrRLLLtgTPLqNslmE 782 (1958)
T KOG0391|consen 714 NAFHVCITSYKLVFQDLT---AFKRKRWQYLVLDEAQNIKNFK-SQRWQALLNFN--SQRRLLLTGTPLQNSLME 782 (1958)
T ss_pred CeeEEeehhhHHHHhHHH---HHHhhccceeehhhhhhhcchh-HHHHHHHhccc--hhheeeecCCchhhHHHH
Confidence 457899999988877665 3555678999999999987653 33455555543 4556667777 3444433
No 216
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=70.49 E-value=3.6 Score=47.95 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=31.3
Q ss_pred ccCCCcEEEEcHHHHHHHHhc--CCCCCCCCcceEEEeccCccCcc
Q 008461 5 HVNELNILVCTPGRLLQHMDE--TPNFDCSQLQILILDEADRILDV 48 (564)
Q Consensus 5 r~~~~~ILV~TPgrLl~~L~~--~~~~~~~~L~~lVlDEAD~lld~ 48 (564)
+....+|||+.-.-|+.++.. ...+.-....++||||||+|.+.
T Consensus 216 ~a~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d~ 261 (697)
T PRK11747 216 EIDEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPDV 261 (697)
T ss_pred HHhhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHHH
Confidence 346789999999988877743 22222124688999999999754
No 217
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=70.47 E-value=16 Score=39.75 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=53.8
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----cc-ccCCCcCCCCc
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VA-SRGLDFNKAVD 203 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~-arGLD~pp~V~ 203 (564)
.++||.++|+..|..+++.+..+. .++.+..++|+.+...... .+.....|||+|. .+ ...+++ ..+.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~~~~~IlV~TP~~l~~~l~~~~~~l-~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---VLESGVDILIGTTGRLIDYAKQNHINL-GAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccc-cccc
Confidence 579999999999999988776542 3678888999877654433 2233678999997 22 235788 7899
Q ss_pred EEEEcC
Q 008461 204 WVVQVD 209 (564)
Q Consensus 204 ~VI~~d 209 (564)
+||.=.
T Consensus 160 ~lViDE 165 (423)
T PRK04837 160 VVVLDE 165 (423)
T ss_pred EEEEec
Confidence 888643
No 218
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=70.10 E-value=3.6 Score=49.07 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=32.3
Q ss_pred ccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcc
Q 008461 5 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV 48 (564)
Q Consensus 5 r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~ 48 (564)
+....+|||+.-.-|+.++.....+ +....+|||||||+|.+.
T Consensus 413 ~a~~AdivItNHa~L~~~~~~~~~i-lp~~~~lIiDEAH~L~d~ 455 (850)
T TIGR01407 413 NAEQAQILITNHAYLITRLVDNPEL-FPSFRDLIIDEAHHLPDI 455 (850)
T ss_pred HHhcCCEEEecHHHHHHHhhccccc-CCCCCEEEEECcchHHHH
Confidence 3467899999999888877544222 345579999999998763
No 219
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=69.35 E-value=23 Score=43.14 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=66.6
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhhCCCCC--eeeccCCCCHHHHHHHHHHHhc-cCCeEEEec-ccccCCCcCCCCcE
Q 008461 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIP--LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-VASRGLDFNKAVDW 204 (564)
Q Consensus 129 ~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~--v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd-v~arGLD~pp~V~~ 204 (564)
..++++.|.|+|.=-|+..|+.|+..+.+++ |..+..=.+..+...+++...+ +.+|+|.|- +++-+|-| .+.-+
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~F-kdLGL 719 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKF-KDLGL 719 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEE-ecCCe
Confidence 3468999999999999999999999877765 4567777788999999999999 999999998 55777888 77777
Q ss_pred EEE
Q 008461 205 VVQ 207 (564)
Q Consensus 205 VI~ 207 (564)
+|.
T Consensus 720 lII 722 (1139)
T COG1197 720 LII 722 (1139)
T ss_pred EEE
Confidence 775
No 220
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=67.35 E-value=29 Score=38.37 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=53.0
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecc------cccCCCcCCCC
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV------ASRGLDFNKAV 202 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv------~arGLD~pp~V 202 (564)
.++||.++|+..+..++..+..+. .++.+..++|+.+..... ..+.. ...|||+|.- ....+.+ ..+
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l-~~l 238 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEARFCDILVATPGRLLDFNQRGEVHL-DMV 238 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCCCCCEEEECHHHHHHHHHcCCccc-ccC
Confidence 579999999999999998887763 357788899987754332 34445 6789999972 2334666 678
Q ss_pred cEEEE
Q 008461 203 DWVVQ 207 (564)
Q Consensus 203 ~~VI~ 207 (564)
.+||.
T Consensus 239 ~~lVi 243 (475)
T PRK01297 239 EVMVL 243 (475)
T ss_pred ceEEe
Confidence 87775
No 221
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=67.26 E-value=7.7 Score=37.89 Aligned_cols=42 Identities=31% Similarity=0.414 Sum_probs=33.3
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEecc
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 73 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSAT 73 (564)
....++||||+|.-+|......+..++..+.++.|+++.|-.
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~ 198 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHN 198 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 456789999999999999889999999999889999988643
No 222
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=66.73 E-value=21 Score=39.31 Aligned_cols=73 Identities=14% Similarity=0.213 Sum_probs=53.6
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec------ccccCCCcCCCCc
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD------VASRGLDFNKAVD 203 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd------v~arGLD~pp~V~ 203 (564)
.++||.++|+..|..+++.+..+. .++.+..++|+.+...... .+.....|||||. .....+++ ..++
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~IiV~TP~rL~~~~~~~~~~l-~~v~ 151 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLRGGVDVLVATPGRLLDLEHQNAVKL-DQVE 151 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHcCCCcEEEEChHHHHHHHHcCCccc-ccce
Confidence 369999999999999998887653 3566778899988655332 2334778999996 23456788 7888
Q ss_pred EEEEc
Q 008461 204 WVVQV 208 (564)
Q Consensus 204 ~VI~~ 208 (564)
+||.=
T Consensus 152 ~lViD 156 (456)
T PRK10590 152 ILVLD 156 (456)
T ss_pred EEEee
Confidence 88853
No 223
>PRK13766 Hef nuclease; Provisional
Probab=66.26 E-value=30 Score=40.70 Aligned_cols=78 Identities=17% Similarity=0.320 Sum_probs=57.5
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecc------cccCCCcCC
Q 008461 129 HLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV------ASRGLDFNK 200 (564)
Q Consensus 129 ~~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv------~arGLD~pp 200 (564)
..++++||.++|...+...++.|.... ++..+..++|+.+...|..++. ...|+|+|.- ...-+++ .
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~----~~~iiv~T~~~l~~~l~~~~~~~-~ 130 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE----KAKVIVATPQVIENDLIAGRISL-E 130 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh----CCCEEEECHHHHHHHHHcCCCCh-h
Confidence 346899999999999988888887653 2347888999999887764432 4679999963 2345677 6
Q ss_pred CCcEEEEcCCC
Q 008461 201 AVDWVVQVDCP 211 (564)
Q Consensus 201 ~V~~VI~~d~P 211 (564)
.+++||.-.+-
T Consensus 131 ~~~liVvDEaH 141 (773)
T PRK13766 131 DVSLLIFDEAH 141 (773)
T ss_pred hCcEEEEECCc
Confidence 78888876654
No 224
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=65.74 E-value=40 Score=38.48 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc--cCCeEEEeccccc
Q 008461 117 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLFCTDVASR 194 (564)
Q Consensus 117 ~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~--~~~VLVaTdv~ar 194 (564)
++...+..-++......+.|.|.|-.+|..+...|+.. .. ..++..-.+ .....|--.-.+.
T Consensus 641 qr~~~ii~~mkk~~~etiaVi~kt~~d~~~~~d~lre~-~~---------------~r~I~k~nq~f~~~~~vipvy~aK 704 (747)
T COG3973 641 QRNPDIIPRMKKRGSETIAVICKTDHDCKAVMDSLREK-DS---------------QRTIAKENQRFHHGSDVIPVYDAK 704 (747)
T ss_pred HhhHHHHHHHHhcCCCceEEECCcHHHHHHHHHHHhhc-ch---------------hhHHHhhcccccCCceEEEeeecc
Confidence 45666666677777789999999999999999999753 11 122222222 3334444445688
Q ss_pred CCCcCCCCcEEEEcCCC
Q 008461 195 GLDFNKAVDWVVQVDCP 211 (564)
Q Consensus 195 GLD~pp~V~~VI~~d~P 211 (564)
||-| ++||.|||.
T Consensus 705 GlEF----D~viv~d~s 717 (747)
T COG3973 705 GLEF----DHVIVVDPS 717 (747)
T ss_pred ccee----eeEEEecch
Confidence 9998 789999983
No 225
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=65.48 E-value=5.4 Score=47.44 Aligned_cols=42 Identities=14% Similarity=0.385 Sum_probs=32.8
Q ss_pred ccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcc
Q 008461 5 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV 48 (564)
Q Consensus 5 r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~ 48 (564)
+....+|||+.-.-|+.++...+. +...+++||||||++.+.
T Consensus 410 ~a~~AdivItNHall~~~~~~~~~--~p~~~~lIiDEAH~l~~~ 451 (820)
T PRK07246 410 KAKTARLLITNHAYFLTRVQDDKD--FARNKVLVFDEAQKLMLQ 451 (820)
T ss_pred HHHhCCEEEEchHHHHHHHhhccC--CCCCCEEEEECcchhHHH
Confidence 345789999999988887755433 467899999999998743
No 226
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=65.42 E-value=6.7 Score=41.67 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=22.6
Q ss_pred CCCcceEEEeccCccCccc-------HHHHHHHHHHh
Q 008461 31 CSQLQILILDEADRILDVG-------FKKALNAIVSQ 60 (564)
Q Consensus 31 ~~~L~~lVlDEAD~lld~g-------f~~~l~~Il~~ 60 (564)
....++||+||||+|...+ ....|..|+..
T Consensus 81 ~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred CCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 4678999999999998832 24667777766
No 227
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=64.60 E-value=51 Score=31.27 Aligned_cols=70 Identities=11% Similarity=0.230 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeee-ccCCCCHHHHHHHHHHHhc-cCCeEE
Q 008461 117 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC-LYGRMKQDRRMAIYAQFCE-KRSVLF 187 (564)
Q Consensus 117 ~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~-lHg~m~~~~R~~i~~~F~~-~~~VLV 187 (564)
+-+..|+.....+ +.++-++-.+...++.+.+.|++..|++.+.. +||-+...+...+++..+. ..++|+
T Consensus 33 dl~~~ll~~~~~~-~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~ 104 (171)
T cd06533 33 DLMPALLELAAQK-GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILF 104 (171)
T ss_pred HHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 3444555555443 56777777888899999999999999999776 8898888877777777776 555443
No 228
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=64.25 E-value=5.4 Score=48.10 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=32.5
Q ss_pred ccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcc
Q 008461 5 HVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV 48 (564)
Q Consensus 5 r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~ 48 (564)
+....+|||+.-.-|+.++..... -+....++||||||++.+.
T Consensus 428 ~a~~AdivItNHalLl~dl~~~~~-ilp~~~~lViDEAH~l~d~ 470 (928)
T PRK08074 428 RAKFADLVITNHALLLTDLTSEEP-LLPSYEHIIIDEAHHFEEA 470 (928)
T ss_pred HHhcCCEEEECHHHHHHHHhhhcc-cCCCCCeEEEECCchHHHH
Confidence 446789999999988887743322 2466799999999998754
No 229
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.56 E-value=20 Score=39.62 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=52.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecc
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 191 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv 191 (564)
...+||.++++..+...+..|... |+.+..++|+.+..++..++..... ...++++|.-
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~--gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKAS--GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 567999999999998888888774 8999999999999999999999988 8899999973
No 230
>PRK09401 reverse gyrase; Reviewed
Probab=63.23 E-value=32 Score=42.71 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=55.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCC--CCCe--eeccCCCCHHHHHHHHHHHhc-cCCeEEEec-----ccccCCCcC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPL--MCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-----VASRGLDFN 199 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v--~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd-----v~arGLD~p 199 (564)
.+.+++|.+||+..+..+++.|..+.. ++.+ ...||+++..++......+.. ...|+|+|. .+. .+..
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~- 199 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPK- 199 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccc-
Confidence 368899999999999999999988643 2333 344666777778888888888 789999995 222 3443
Q ss_pred CCCcEEEE
Q 008461 200 KAVDWVVQ 207 (564)
Q Consensus 200 p~V~~VI~ 207 (564)
..+++||.
T Consensus 200 ~~~~~lVv 207 (1176)
T PRK09401 200 KKFDFVFV 207 (1176)
T ss_pred cccCEEEE
Confidence 34777764
No 231
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=63.20 E-value=66 Score=36.09 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=51.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhh--CCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecc-------cccCCCcCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKL--RPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-------ASRGLDFNKA 201 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l--~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv-------~arGLD~pp~ 201 (564)
..++||.|+|+..+-.++...+++ +-.+.+...-||++-.....++ ++..+|+|||+- -+.+.++ .+
T Consensus 252 ~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~L---Rs~PDIVIATPGRlIDHlrNs~sf~l-ds 327 (691)
T KOG0338|consen 252 ATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVL---RSRPDIVIATPGRLIDHLRNSPSFNL-DS 327 (691)
T ss_pred ceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHH---hhCCCEEEecchhHHHHhccCCCccc-cc
Confidence 468999999999888888877765 2457788888999987665543 447899999981 1344555 44
Q ss_pred CcEEE
Q 008461 202 VDWVV 206 (564)
Q Consensus 202 V~~VI 206 (564)
|...|
T Consensus 328 iEVLv 332 (691)
T KOG0338|consen 328 IEVLV 332 (691)
T ss_pred eeEEE
Confidence 55444
No 232
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=63.05 E-value=6.4 Score=45.75 Aligned_cols=62 Identities=24% Similarity=0.425 Sum_probs=47.0
Q ss_pred HHHHhc-cCCeEEEecccccCCCcCCCCcEE--------EEcCCCCCHhhHHHHhcccccCCC-CceEEEEeC
Q 008461 176 YAQFCE-KRSVLFCTDVASRGLDFNKAVDWV--------VQVDCPEDVASYIHRVGRTARYNS-GGRSVLFLT 238 (564)
Q Consensus 176 ~~~F~~-~~~VLVaTdv~arGLD~pp~V~~V--------I~~d~P~s~~~YiqRiGRtgR~g~-~G~~il~l~ 238 (564)
-++|.. ...|-|-+..++-||-+ ..-+-| |-+.+||+.+.-||..|||.|.+. .+.-++|+.
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSL-QsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlI 921 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISL-QSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLI 921 (1300)
T ss_pred HhhhccccceeeeeehhhccCcee-ecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEe
Confidence 346666 56677778889999998 654444 457899999999999999999876 455555554
No 233
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=62.96 E-value=37 Score=28.96 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=43.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCC-CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecc
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 191 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~-gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv 191 (564)
...++||++++...+..+.+.+..... +..+..+++........ ........|+++|.-
T Consensus 29 ~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~i~t~~ 88 (144)
T cd00046 29 KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLLSGKTDIVVGTPG 88 (144)
T ss_pred cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHhcCCCCEEEECcH
Confidence 468999999999999999988887643 46778888876655443 111126778888886
No 234
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=61.72 E-value=59 Score=30.83 Aligned_cols=70 Identities=13% Similarity=0.233 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCee-eccCCCCHHHHHHHHHHHhc-cCCeEE
Q 008461 117 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLM-CLYGRMKQDRRMAIYAQFCE-KRSVLF 187 (564)
Q Consensus 117 ~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~-~lHg~m~~~~R~~i~~~F~~-~~~VLV 187 (564)
+-+..|+...... +.++-++-.+...++.+...|....|++.+. .+||-++..+...+++..+. ..+||+
T Consensus 35 dl~~~l~~~~~~~-~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 35 DLFPDLLRRAEQR-GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred HHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 3444555544443 4577777788888899999999999999987 56677888888899988887 665554
No 235
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=61.41 E-value=24 Score=40.25 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=51.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 190 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd 190 (564)
.+.+||.+|+..-+...+..|... |+++..+||+++..++..++..... ...+|++|.
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~--gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAA--GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 467899999999988888888875 8999999999999999999999888 889998885
No 236
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=60.17 E-value=71 Score=30.67 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=44.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeE
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVL 186 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VL 186 (564)
+.++-++-.+...++.+.+.|+..+|++.+...||.+++.+...+.+..+. ..++|
T Consensus 48 ~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil 104 (177)
T TIGR00696 48 KLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIV 104 (177)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 346666667888889999999999999997777999988877777777776 55444
No 237
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=59.70 E-value=36 Score=36.80 Aligned_cols=100 Identities=19% Similarity=0.317 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc---
Q 008461 118 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA--- 192 (564)
Q Consensus 118 Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~--- 192 (564)
-+..|-.+|.......++|.++|+.-+..+.+.|..+.. |+.+.++-|||..... .. ....+..|||||.=.
T Consensus 116 aLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q--~~-~L~kkPhilVaTPGrL~d 192 (476)
T KOG0330|consen 116 ALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQ--AN-QLSKKPHILVATPGRLWD 192 (476)
T ss_pred HHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHH--HH-HhhcCCCEEEeCcHHHHH
Confidence 456666777766677899999999999999999988744 4567889999885422 22 223366789999832
Q ss_pred ----ccCCCcCCCCcEEE--------EcCCCCCHhhHHHHh
Q 008461 193 ----SRGLDFNKAVDWVV--------QVDCPEDVASYIHRV 221 (564)
Q Consensus 193 ----arGLD~pp~V~~VI--------~~d~P~s~~~YiqRi 221 (564)
..|..+ ..+.+.| +.|+-..++.++-++
T Consensus 193 hl~~Tkgf~l-e~lk~LVlDEADrlLd~dF~~~ld~ILk~i 232 (476)
T KOG0330|consen 193 HLENTKGFSL-EQLKFLVLDEADRLLDMDFEEELDYILKVI 232 (476)
T ss_pred HHHhccCccH-HHhHHHhhchHHhhhhhhhHHHHHHHHHhc
Confidence 577776 5555544 344444455444444
No 238
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=59.39 E-value=16 Score=29.84 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=32.3
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-eeeccCCCCH
Q 008461 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 169 (564)
Q Consensus 129 ~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~-v~~lHg~m~~ 169 (564)
....++||||.+...+..++..|... |+. +..|.|++..
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~--G~~~v~~l~GG~~~ 93 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLREL--GFKNVYLLDGGYKE 93 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHc--CCCceEEecCCHHH
Confidence 34689999999998999999999875 665 8899999754
No 239
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=58.83 E-value=17 Score=31.86 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=20.5
Q ss_pred ceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEecc
Q 008461 35 QILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 73 (564)
Q Consensus 35 ~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSAT 73 (564)
.+|||||||++.. ...+..|........-.+++++|
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~ 124 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLVGT 124 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEEES
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEEEC
Confidence 6899999999632 44444444443333333444444
No 240
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=58.23 E-value=39 Score=39.67 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=49.5
Q ss_pred HHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecc
Q 008461 124 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 191 (564)
Q Consensus 124 ~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv 191 (564)
.++....+.++.|.++|..-|...++.+..+.. |+++.++.|+++..+|...+ ...|+++|..
T Consensus 90 a~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y-----~~dIvyGT~~ 154 (745)
T TIGR00963 90 AYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY-----ACDITYGTNN 154 (745)
T ss_pred HHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc-----CCCEEEECCC
Confidence 334444577899999999999988888877643 78899999999987766444 4789999986
No 241
>PTZ00110 helicase; Provisional
Probab=58.09 E-value=29 Score=39.34 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=53.2
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----ccccC-CCcCCCCc
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAVD 203 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~arG-LD~pp~V~ 203 (564)
..+||.++|+..|..+++.+..+. .++.+.+++|+.+..... ..+.....|||+|. .+.++ +++ ..++
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~---~~l~~~~~IlVaTPgrL~d~l~~~~~~l-~~v~ 279 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQI---YALRRGVEILIACPGRLIDFLESNVTNL-RRVT 279 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHH---HHHHcCCCEEEECHHHHHHHHHcCCCCh-hhCc
Confidence 468999999999999998887753 246678888988755432 23334778999995 44444 677 7788
Q ss_pred EEEEcC
Q 008461 204 WVVQVD 209 (564)
Q Consensus 204 ~VI~~d 209 (564)
+||.=.
T Consensus 280 ~lViDE 285 (545)
T PTZ00110 280 YLVLDE 285 (545)
T ss_pred EEEeeh
Confidence 887533
No 242
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=57.87 E-value=14 Score=38.68 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=35.3
Q ss_pred CCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCCh
Q 008461 29 FDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK 76 (564)
Q Consensus 29 ~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~ 76 (564)
..+..++++||||||.|... -+..+...++..+....++|...-++.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChhh
Confidence 34677899999999987654 467788888888877777777665443
No 243
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=57.12 E-value=15 Score=30.40 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=30.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCH
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 169 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~ 169 (564)
..++|+||++...+...+..|+.. |+.+..+.||+..
T Consensus 51 ~~~vvl~c~~g~~a~~~a~~L~~~--G~~v~~l~GG~~~ 87 (90)
T cd01524 51 DKEIIVYCAVGLRGYIAARILTQN--GFKVKNLDGGYKT 87 (90)
T ss_pred CCcEEEEcCCChhHHHHHHHHHHC--CCCEEEecCCHHH
Confidence 578999999988888888888875 6689999999753
No 244
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=56.76 E-value=56 Score=29.87 Aligned_cols=72 Identities=24% Similarity=0.312 Sum_probs=45.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCC---CCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEe-----cccccC-CCcCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPG---IPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT-----DVASRG-LDFNK 200 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~g---i~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaT-----dv~arG-LD~pp 200 (564)
..++||.+++...+..++..+....+. .....+++... ...+..+.. ...|+++| +....+ +.+ .
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~-~ 128 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLEL-S 128 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCH-h
Confidence 478999999999998888888776443 33445555432 334444555 44899999 433333 355 4
Q ss_pred CCcEEEE
Q 008461 201 AVDWVVQ 207 (564)
Q Consensus 201 ~V~~VI~ 207 (564)
.+.++|.
T Consensus 129 ~~~~iIi 135 (201)
T smart00487 129 NVDLVIL 135 (201)
T ss_pred HCCEEEE
Confidence 5666654
No 245
>PRK05642 DNA replication initiation factor; Validated
Probab=56.55 E-value=17 Score=36.37 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=41.4
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcc-cHHHHHHHHHHhCCCCCcEEEEeccCCh
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDV-GFKKALNAIVSQLPKHRQTFLFSATQTK 76 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~-gf~~~l~~Il~~lp~~~Q~llfSATl~~ 76 (564)
+..+++.|...+......- .-.+.+.++||||++|.+... .+...+..++..+......+++++|.++
T Consensus 73 ~~~v~y~~~~~~~~~~~~~-~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 73 GEPAVYLPLAELLDRGPEL-LDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred CCcEEEeeHHHHHhhhHHH-HHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4566666666665432110 002456689999999987543 3566688888776654445666666544
No 246
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=56.07 E-value=34 Score=40.37 Aligned_cols=92 Identities=17% Similarity=0.248 Sum_probs=62.3
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhhC-CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-ccccCC---------C
Q 008461 129 HLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-VASRGL---------D 197 (564)
Q Consensus 129 ~~~~k~IVF~~t~k~v~~l~e~L~~l~-~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-v~arGL---------D 197 (564)
....++||.++|+.-+...+..|..+. .++.+..++|+.+..+|.. .+....|+|+|. .+..++ .
T Consensus 79 ~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~----i~~~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 79 DPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRW----AREHARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHH----HhcCCCEEEEChHHHHHhhccchhHHHHH
Confidence 345689999999999999999888763 3677889999999877632 233678999995 332221 2
Q ss_pred cCCCCcEEEEcCCC-------CCHhhHHHHhcccc
Q 008461 198 FNKAVDWVVQVDCP-------EDVASYIHRVGRTA 225 (564)
Q Consensus 198 ~pp~V~~VI~~d~P-------~s~~~YiqRiGRtg 225 (564)
+ .++++||.=.+- .....++.|+-|..
T Consensus 155 l-~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~ 188 (742)
T TIGR03817 155 L-RRLRYVVIDECHSYRGVFGSHVALVLRRLRRLC 188 (742)
T ss_pred H-hcCCEEEEeChhhccCccHHHHHHHHHHHHHHH
Confidence 5 568888863322 23445566655543
No 247
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=54.40 E-value=1.4e+02 Score=30.47 Aligned_cols=56 Identities=11% Similarity=0.220 Sum_probs=42.7
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc-CCCCHHHHHHHHHHHhc-cCCeEE
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY-GRMKQDRRMAIYAQFCE-KRSVLF 187 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH-g~m~~~~R~~i~~~F~~-~~~VLV 187 (564)
.++-++-.+...++.....+++..|++.+...| |-.+..+...++++... +.+||+
T Consensus 109 ~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~ 166 (253)
T COG1922 109 KRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILL 166 (253)
T ss_pred ceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEE
Confidence 444455566777888888999999988876655 88888888888888887 766664
No 248
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=54.22 E-value=1.8e+02 Score=34.74 Aligned_cols=83 Identities=13% Similarity=0.235 Sum_probs=45.7
Q ss_pred HcCCCcEEEEeCChHHHHHHHHHHHhh-----CCCCCeeeccCCCCHHHHHHHHHHHhc-------cCC--eEEEecccc
Q 008461 128 AHLNSKILVFLTSCKQVKYVFEAFKKL-----RPGIPLMCLYGRMKQDRRMAIYAQFCE-------KRS--VLFCTDVAS 193 (564)
Q Consensus 128 ~~~~~k~IVF~~t~k~v~~l~e~L~~l-----~~gi~v~~lHg~m~~~~R~~i~~~F~~-------~~~--VLVaTdv~a 193 (564)
...+..+|||+++-...+.+....... ..++.-..+-- .+...=.+++..|.+ ... ..||---++
T Consensus 558 rvVp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEP-r~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVS 636 (945)
T KOG1132|consen 558 RVVPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEP-RSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVS 636 (945)
T ss_pred hhcccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceecc-CCccchHHHHHHHHHHhhCccccceEEEEEeccccc
Confidence 334677999999987666653333220 01111111111 122223344555543 112 456677889
Q ss_pred cCCCcCCC--CcEEEEcCCCC
Q 008461 194 RGLDFNKA--VDWVVQVDCPE 212 (564)
Q Consensus 194 rGLD~pp~--V~~VI~~d~P~ 212 (564)
+|||| .+ -+.||..++|.
T Consensus 637 EGlDF-sD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 637 EGLDF-SDDNGRAVIITGLPY 656 (945)
T ss_pred CCCCc-cccCCceeEEecCCC
Confidence 99999 43 56889999883
No 249
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=54.10 E-value=13 Score=44.64 Aligned_cols=67 Identities=22% Similarity=0.278 Sum_probs=51.8
Q ss_pred CCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCC--Cc-----e--EE-EEeCcchHHHHHHHHH
Q 008461 183 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS--GG-----R--SV-LFLTPTEMKMLEKLRE 250 (564)
Q Consensus 183 ~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~--~G-----~--~i-l~l~~~e~~~l~~L~~ 250 (564)
.+.||+-.++..|.|. |.|-.++-+.-..+...-.|.+||.-|.-- .| . .+ ++++.++..|...|..
T Consensus 502 ~~fifs~~al~egwd~-~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~ 578 (986)
T PRK15483 502 RRFLFSKWTLREGWDN-PNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVG 578 (986)
T ss_pred eEEEEEhHHhhhcCCC-CCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHH
Confidence 4689999999999999 889999989988899999999999998531 12 1 23 3344566668888765
No 250
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=54.08 E-value=1e+02 Score=35.75 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=73.9
Q ss_pred cCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeec--------------------cC-----CC
Q 008461 113 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL--------------------YG-----RM 167 (564)
Q Consensus 113 ~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~l--------------------Hg-----~m 167 (564)
++...|-..+..+++.. +.++||.+++...+..++..|..+.|...|..+ +. .-
T Consensus 40 l~gs~ka~lia~l~~~~-~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~ 118 (652)
T PRK05298 40 VTGSGKTFTMANVIARL-QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEE 118 (652)
T ss_pred CCCcHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChH
Confidence 34445555666666543 679999999999999999999888766545444 11 11
Q ss_pred CHHHHHHHHHHHhc-cCCeEEEecccccCCCcCC----CCcEEEEcCCCCCHhhHHHHhcccc
Q 008461 168 KQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK----AVDWVVQVDCPEDVASYIHRVGRTA 225 (564)
Q Consensus 168 ~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp----~V~~VI~~d~P~s~~~YiqRiGRtg 225 (564)
-...|..++..+.. ...|+|||-.+..++=- | ...+.+..+-..+.+.++.+.-..|
T Consensus 119 ~~~~R~~~l~~L~~~~~~ivv~s~~al~~~~~-~~~~~~~~~~l~~G~~i~~~~l~~~L~~~G 180 (652)
T PRK05298 119 IERLRHSATKSLLERRDVIVVASVSCIYGLGS-PEEYLKMVLSLRVGQEIDRRELLRRLVDLQ 180 (652)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcHHHhcCCCC-HHHHHhceEEEeCCCCcCHHHHHHHHHHcC
Confidence 14568888988887 55566666544455431 2 2456777788888888777665444
No 251
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=53.10 E-value=50 Score=33.49 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHcC-CCcEEEEeCChHHHHHHHHHHHhh
Q 008461 117 QKLDMLWSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKL 154 (564)
Q Consensus 117 ~Kl~~L~~~L~~~~-~~k~IVF~~t~k~v~~l~e~L~~l 154 (564)
.++..-+.+++... ....|.|+.|++++......+...
T Consensus 48 ~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~r 86 (252)
T COG0052 48 ERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAER 86 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHH
Confidence 45556667776654 478899999999999888877664
No 252
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=52.06 E-value=53 Score=38.50 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=46.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc--cCCeEEEec
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLFCTD 190 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~--~~~VLVaTd 190 (564)
.++|.||.|+-.-.-.++. .|.+..|+++++++||+ ..+|......+.. ...|+|+|-
T Consensus 216 ~~GPfLVi~P~StL~NW~~-Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 216 IPGPFLVIAPKSTLDNWMN-EFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred CCCCeEEEeeHhhHHHHHH-HHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 3789999999766655554 46667899999999995 5788888888776 678888875
No 253
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=51.75 E-value=13 Score=42.85 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=32.4
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCC-CCCcceEEEeccCccCccc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFD-CSQLQILILDEADRILDVG 49 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~-~~~L~~lVlDEAD~lld~g 49 (564)
..++|+|+++.-++.......... +..-.++|+||||++.+..
T Consensus 193 ~~ad~vv~nh~~~~~~~~~~~~~~~~p~~~v~v~DEAH~l~d~a 236 (654)
T COG1199 193 ENADLVVTNHALLLADVALEESRILLPENDVVVFDEAHNLPDIA 236 (654)
T ss_pred hhCCEEEEccHHHHhHHHhhhhhccCCcccEEEEeccccchHHH
Confidence 468999999999987665442221 4567899999999998753
No 254
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=51.62 E-value=8.7 Score=45.60 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=32.8
Q ss_pred ccccCCCcEEEEcHHHH-----HHHHhcC-CCCCCCCcceEEEeccCccC
Q 008461 3 KEHVNELNILVCTPGRL-----LQHMDET-PNFDCSQLQILILDEADRIL 46 (564)
Q Consensus 3 k~r~~~~~ILV~TPgrL-----l~~L~~~-~~~~~~~L~~lVlDEAD~ll 46 (564)
+...-.++|++||++.| .++|... .....+.+.+.|+||||.+|
T Consensus 169 rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 169 RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 44455899999999998 5666532 22346788999999999765
No 255
>PLN03025 replication factor C subunit; Provisional
Probab=50.35 E-value=39 Score=35.30 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=27.1
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
...+++||||||.|.... +..+..+++..+....+++.+
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 457899999999986543 566777777666555555443
No 256
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=50.16 E-value=28 Score=35.99 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=29.3
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
...++|||||+|.+........+..+++..+.+.++++.|
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 3568999999999844445677778888877666666544
No 257
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.12 E-value=25 Score=40.75 Aligned_cols=40 Identities=18% Similarity=0.421 Sum_probs=26.3
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEec
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 72 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSA 72 (564)
...+++||||+|+|....| +.|.++++.-|....+||.|.
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeC
Confidence 4678999999999876544 344445555455565655543
No 258
>PRK06893 DNA replication initiation factor; Validated
Probab=49.85 E-value=17 Score=36.07 Aligned_cols=47 Identities=15% Similarity=0.293 Sum_probs=31.6
Q ss_pred CCCcceEEEeccCccCc-ccHHHHHHHHHHhCCC-CCcEEEEeccCChh
Q 008461 31 CSQLQILILDEADRILD-VGFKKALNAIVSQLPK-HRQTFLFSATQTKS 77 (564)
Q Consensus 31 ~~~L~~lVlDEAD~lld-~gf~~~l~~Il~~lp~-~~Q~llfSATl~~~ 77 (564)
+.+.++|||||+|.+.. ..+...+..++..+.. ..+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 35678999999998763 3345566666666543 34667788876544
No 259
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=49.74 E-value=56 Score=33.45 Aligned_cols=89 Identities=19% Similarity=0.359 Sum_probs=60.5
Q ss_pred CcEEEEeCChHHHHHH---HHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec------ccccCCCcCCCC
Q 008461 132 SKILVFLTSCKQVKYV---FEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD------VASRGLDFNKAV 202 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l---~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd------v~arGLD~pp~V 202 (564)
-.++|.|.|+..+-.+ |+.|.+..|++.+.++.||++-..-.+++.. -..|+|+|+ +-.+.+++ ..|
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~---~PhivVgTPGrilALvr~k~l~l-k~v 186 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN---CPHIVVGTPGRILALVRNRSLNL-KNV 186 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC---CCeEEEcCcHHHHHHHHhccCch-hhc
Confidence 4689999999877655 4567777899999999999987665555433 567889998 22455777 667
Q ss_pred cEEEEcCCCC-----CHhhHHHHhccc
Q 008461 203 DWVVQVDCPE-----DVASYIHRVGRT 224 (564)
Q Consensus 203 ~~VI~~d~P~-----s~~~YiqRiGRt 224 (564)
.+-|.-.|.. +...-+|-+=|.
T Consensus 187 khFvlDEcdkmle~lDMrRDvQEifr~ 213 (387)
T KOG0329|consen 187 KHFVLDECDKMLEQLDMRRDVQEIFRM 213 (387)
T ss_pred ceeehhhHHHHHHHHHHHHHHHHHhhc
Confidence 6666544432 333445555554
No 260
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=49.66 E-value=15 Score=37.82 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=0.0
Q ss_pred CcEEEEcHHHH-HHHHhcCCCCC-----CCCcceEEEeccCccC
Q 008461 9 LNILVCTPGRL-LQHMDETPNFD-----CSQLQILILDEADRIL 46 (564)
Q Consensus 9 ~~ILV~TPgrL-l~~L~~~~~~~-----~~~L~~lVlDEAD~ll 46 (564)
++|+.||.+.| .+.|..+-... .+.+.++|+||||.++
T Consensus 167 ~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 167 ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
No 261
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=49.63 E-value=18 Score=30.45 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=31.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCH
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 169 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~ 169 (564)
...+++|+|.+...+...+..|... |+.+..+.||+..
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~--G~~~~~l~GG~~~ 97 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAER--GYDVDYLAGGMKA 97 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHc--CceeEEeCCcHHh
Confidence 3578999999988888888999875 8888889999753
No 262
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=49.59 E-value=1e+02 Score=33.01 Aligned_cols=127 Identities=15% Similarity=0.190 Sum_probs=84.2
Q ss_pred EEcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEE
Q 008461 111 MIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFC 188 (564)
Q Consensus 111 ~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVa 188 (564)
..+.-..|.++++.-+... .+..+.+-.+..+.|-.+|..|+..++++.+..+||+-++.-| ..++||
T Consensus 122 ~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr----------~plvVa 191 (441)
T COG4098 122 WAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFR----------APLVVA 191 (441)
T ss_pred EEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhcc----------ccEEEE
Confidence 3445566777777776543 3678888889999999999999999999999999998776433 356666
Q ss_pred ec-ccccCCCcCCCCcEEEEc---CCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHHHHc
Q 008461 189 TD-VASRGLDFNKAVDWVVQV---DCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 251 (564)
Q Consensus 189 Td-v~arGLD~pp~V~~VI~~---d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~ 251 (564)
|. -+- -|..+.+++|.= .+|.+.+..+|-+-+-+|.-. |.-|.+...+.....+.+...
T Consensus 192 TtHQLl---rFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~-g~~IylTATp~k~l~r~~~~g 254 (441)
T COG4098 192 TTHQLL---RFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKE-GATIYLTATPTKKLERKILKG 254 (441)
T ss_pred ehHHHH---HHHhhccEEEEeccccccccCCHHHHHHHHHhhccc-CceEEEecCChHHHHHHhhhC
Confidence 65 222 222345555542 268888999998888888643 443333333334444444443
No 263
>PF15586 Imm47: Immunity protein 47
Probab=47.86 E-value=33 Score=30.71 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=33.3
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCC
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP 62 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp 62 (564)
..+|.||||..|.++..... + +-.=.+||+++.+. ......+..++..+.
T Consensus 44 ~F~v~VcTP~wL~~~~~~~~-~-~~gr~~LIv~~yd~---~~I~~~i~~~i~~c~ 93 (116)
T PF15586_consen 44 YFQVFVCTPKWLSKNCWKPG-I-LWGRHMLIVEEYDY---DEIKKTIERIIESCE 93 (116)
T ss_pred eEEEEEEcHHHHHHhhcCCc-c-eeccceEEEecCCH---HHHHHHHHHHHHHcc
Confidence 47899999999987766542 1 23336899999873 113456666666653
No 264
>PRK06526 transposase; Provisional
Probab=46.51 E-value=34 Score=34.73 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=42.5
Q ss_pred CCCcEEEEcHHHHHHHHhcC---CC-----CCCCCcceEEEeccCccCc-ccHHHHHHHHHHhCCCCCcEEEEeccCChh
Q 008461 7 NELNILVCTPGRLLQHMDET---PN-----FDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKS 77 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~---~~-----~~~~~L~~lVlDEAD~lld-~gf~~~l~~Il~~lp~~~Q~llfSATl~~~ 77 (564)
.+..+++.|...|+..+... .. ..+.+.++|||||++.+.. ..-...+..++........+++.|...+..
T Consensus 125 ~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 125 AGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred CCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 35667777777776655321 01 1245678999999997642 222345666665433345677777765543
No 265
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=46.38 E-value=20 Score=42.71 Aligned_cols=39 Identities=33% Similarity=0.473 Sum_probs=28.3
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
...+++||||||+|...+ .+.|.++|+..|....+||.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 567899999999987654 456667777777666666554
No 266
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=46.10 E-value=33 Score=38.51 Aligned_cols=88 Identities=17% Similarity=0.330 Sum_probs=56.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCC----CeeeccCCCCHHHHHHHHHHHhccCCeEEEec-------ccccCCCcC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGI----PLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-------VASRGLDFN 199 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi----~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-------v~arGLD~p 199 (564)
+.=.||.++|+.-|..+|+.+.++...+ ++..+-|. .|..--.+.+..++|||+|. --...+++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGE----kkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~- 285 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGE----KKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKF- 285 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeeccc----ccccHHHHHhcCceEEEcCchHHHHHHhccchhee-
Confidence 3458999999999999999999874222 22333332 22222234455899999998 12345677
Q ss_pred CCCcEEEE--------cCCCCCHhhHHHHhcc
Q 008461 200 KAVDWVVQ--------VDCPEDVASYIHRVGR 223 (564)
Q Consensus 200 p~V~~VI~--------~d~P~s~~~YiqRiGR 223 (564)
..++|||. +++-.++...+..++-
T Consensus 286 s~LRwlVlDEaDrlleLGfekdit~Il~~v~~ 317 (708)
T KOG0348|consen 286 SRLRWLVLDEADRLLELGFEKDITQILKAVHS 317 (708)
T ss_pred eeeeEEEecchhHHHhccchhhHHHHHHHHhh
Confidence 67899986 3334566666655544
No 267
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=45.37 E-value=33 Score=32.41 Aligned_cols=54 Identities=20% Similarity=0.347 Sum_probs=43.7
Q ss_pred CCCcceEEEeccCccCcccH--HHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 31 CSQLQILILDEADRILDVGF--KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 31 ~~~L~~lVlDEAD~lld~gf--~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
....++|||||+=..+..|+ ...+..++...|...-+|+.+-..|+.+.+++.+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCce
Confidence 35789999999988777774 4677888899998888888888899888777654
No 268
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.99 E-value=62 Score=36.16 Aligned_cols=73 Identities=19% Similarity=0.322 Sum_probs=47.9
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhCCCCCe--eeccCCCCHHHHHHHHHHHhc----cCCeEEEecc-------cccCCCc
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLRPGIPL--MCLYGRMKQDRRMAIYAQFCE----KRSVLFCTDV-------ASRGLDF 198 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~~gi~v--~~lHg~m~~~~R~~i~~~F~~----~~~VLVaTdv-------~arGLD~ 198 (564)
-++||.++|+.-+-.+|..|..+.+|..+ ..+.|.-+ -+.++.+.-.. ..+|||+|.- ...|+|+
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~s--l~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~L 293 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNS--LEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDL 293 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccc--hHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcch
Confidence 47999999999999999999998776554 44444322 22222222222 4589999982 2456666
Q ss_pred CCCCcEEEE
Q 008461 199 NKAVDWVVQ 207 (564)
Q Consensus 199 pp~V~~VI~ 207 (564)
...++.|.
T Consensus 294 -k~LrfLVI 301 (620)
T KOG0350|consen 294 -KHLRFLVI 301 (620)
T ss_pred -hhceEEEe
Confidence 55666554
No 269
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=43.70 E-value=41 Score=28.35 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=29.7
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCCH
Q 008461 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 169 (564)
Q Consensus 129 ~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~~ 169 (564)
....++||||.+-..+...+..|..+ |+ .+..+.||+..
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~--G~~~v~~l~GG~~~ 98 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKER--GFKNVYQLKGGILK 98 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHh--CCcceeeechhHHH
Confidence 44678999999877777777788765 77 48889998753
No 270
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.55 E-value=12 Score=43.61 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=30.2
Q ss_pred cccCCCcEEEEcHHHHHHHHhcC-CCCCCCCcceEEEeccCccCcc
Q 008461 4 EHVNELNILVCTPGRLLQHMDET-PNFDCSQLQILILDEADRILDV 48 (564)
Q Consensus 4 ~r~~~~~ILV~TPgrLl~~L~~~-~~~~~~~L~~lVlDEAD~lld~ 48 (564)
..+..++||||...-|++--... -..++.+ .+|||||||.|.+.
T Consensus 191 ~~~~~advIi~pYnyl~dp~~r~~~~~~l~~-~ivI~DEAHNL~d~ 235 (705)
T TIGR00604 191 KMLPFANIVLLPYQYLLDPKIRSAVSIELKD-SIVIFDEAHNLDNV 235 (705)
T ss_pred HhhhcCCEEEechHHhcCHHHHHHhhccccc-CEEEEECccchHHH
Confidence 34567899999999886543321 1233444 78999999998764
No 271
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=43.46 E-value=65 Score=36.97 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=50.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 190 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd 190 (564)
...+||.++++.-+......|... |+.+.++++.++...+..++..... ...++++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~--gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLAN--GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 467999999999998888888875 8999999999999999889888888 888998885
No 272
>PRK08727 hypothetical protein; Validated
Probab=43.00 E-value=35 Score=33.96 Aligned_cols=69 Identities=7% Similarity=-0.067 Sum_probs=36.4
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCccc-HHHHHHHHHHhCCC-CCcEEEEeccCChh
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG-FKKALNAIVSQLPK-HRQTFLFSATQTKS 77 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~g-f~~~l~~Il~~lp~-~~Q~llfSATl~~~ 77 (564)
+..+++.|...+...+... .-.+.+..+|||||+|.+.... ....+..++..+.. ..++++.|...|..
T Consensus 69 ~~~~~y~~~~~~~~~~~~~-~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 69 GRSSAYLPLQAAAGRLRDA-LEALEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDG 139 (233)
T ss_pred CCcEEEEeHHHhhhhHHHH-HHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhh
Confidence 4455555555544333211 0123567899999999887533 33445555555432 23455444444443
No 273
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=42.93 E-value=21 Score=37.26 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=24.1
Q ss_pred CCcceEEEeccCccCcccHH--HHHHHHHHhCCCCCcE
Q 008461 32 SQLQILILDEADRILDVGFK--KALNAIVSQLPKHRQT 67 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~--~~l~~Il~~lp~~~Q~ 67 (564)
-++++|||||.|.++..... ..+...+.++.+..++
T Consensus 144 ~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC
Confidence 36799999999998876533 3445556666554443
No 274
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=42.49 E-value=42 Score=28.04 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=29.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMK 168 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~ 168 (564)
...++||||++...+...+..|... |+ .+..+.|+|.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~--G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLAL--GGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHc--CCCCEEEeCCCHH
Confidence 3678999999988888888888765 66 6888999874
No 275
>PRK04296 thymidine kinase; Provisional
Probab=42.31 E-value=48 Score=31.87 Aligned_cols=54 Identities=11% Similarity=0.235 Sum_probs=30.9
Q ss_pred EEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccC
Q 008461 13 VCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQ 74 (564)
Q Consensus 13 V~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl 74 (564)
+..+..+++.+.. .-.+.++||||||+.+-. .++..++..+.+.-.++++++-.
T Consensus 62 ~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~~----~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 62 VSSDTDIFELIEE----EGEKIDCVLIDEAQFLDK----EQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred eCChHHHHHHHHh----hCCCCCEEEEEccccCCH----HHHHHHHHHHHHcCCeEEEEecC
Confidence 3444555554433 224678999999986422 33556666644444556665543
No 276
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=42.26 E-value=72 Score=35.81 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=50.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCC--CCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----ccc-cCCCcCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPG--IPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VAS-RGLDFNKAV 202 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~g--i~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~a-rGLD~pp~V 202 (564)
+..+||.++|+.-|..+++.+..+..+ +.+..+.|+....... ..+.....|+|+|. ++. .++++ ..+
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~~~~IiV~TPgrL~~~l~~~~~~l-~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQGVELIVGTPGRLIDLLSKHDIEL-DNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccc-hhe
Confidence 457999999999998888877765433 4556667765543322 22333678999994 443 36788 788
Q ss_pred cEEEEc
Q 008461 203 DWVVQV 208 (564)
Q Consensus 203 ~~VI~~ 208 (564)
.+||.=
T Consensus 272 ~~lViD 277 (518)
T PLN00206 272 SVLVLD 277 (518)
T ss_pred eEEEee
Confidence 888753
No 277
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=42.21 E-value=36 Score=29.42 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=29.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMK 168 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~ 168 (564)
...++||||++...+..++..|..+ |+ .+..+-|++.
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~--G~~~v~~l~GG~~ 114 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELL--GYKNVRLYDGSWS 114 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHc--CCCCeeeeCChHH
Confidence 3679999999988888888888775 76 4778888864
No 278
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=42.05 E-value=77 Score=40.29 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=55.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHh--------------hCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecc-----
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKK--------------LRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV----- 191 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~--------------l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv----- 191 (564)
+.++|+.++++.-+..++..|+. ..+++.+...||+.++.+|...+ ++...|||+|.-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll---~~ppdILVTTPEsL~~L 113 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLT---RNPPDILITTPESLYLM 113 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHh---cCCCCEEEecHHHHHHH
Confidence 35799999999999888887753 12478899999999998886532 226789999982
Q ss_pred c-ccC-CCcCCCCcEEEEcC
Q 008461 192 A-SRG-LDFNKAVDWVVQVD 209 (564)
Q Consensus 192 ~-arG-LD~pp~V~~VI~~d 209 (564)
+ .++ ..| .+|++||.=.
T Consensus 114 Ltsk~r~~L-~~Vr~VIVDE 132 (1490)
T PRK09751 114 LTSRARETL-RGVETVIIDE 132 (1490)
T ss_pred Hhhhhhhhh-ccCCEEEEec
Confidence 2 233 357 7899998743
No 279
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=41.18 E-value=9.6 Score=36.68 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=23.0
Q ss_pred ccCCCcEEEEcHHHHHHHHhcCCCCC-C-CCcceEEEeccCccCc
Q 008461 5 HVNELNILVCTPGRLLQHMDETPNFD-C-SQLQILILDEADRILD 47 (564)
Q Consensus 5 r~~~~~ILV~TPgrLl~~L~~~~~~~-~-~~L~~lVlDEAD~lld 47 (564)
.+..++||+||+...... .+. + ..+++||+|||=.+..
T Consensus 167 ~l~~~~vi~~T~~~~~~~-----~~~~~~~~~d~vIvDEAsq~~e 206 (236)
T PF13086_consen 167 ILKEADVIFTTLSSAASP-----FLSNFKEKFDVVIVDEASQITE 206 (236)
T ss_dssp HHHT-SEEEEETCGGG-C-----CGTT-----SEEEETTGGGS-H
T ss_pred hcccccccccccccchhh-----HhhhhcccCCEEEEeCCCCcch
Confidence 345789999999866221 222 1 2789999999998654
No 280
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=40.69 E-value=1.1e+02 Score=36.77 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=47.5
Q ss_pred HHcCCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecc
Q 008461 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 191 (564)
Q Consensus 127 ~~~~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv 191 (564)
....+..++|.++|..-|...++.+..+. -|+.+.++.|+++...|...+ ...|+++|+-
T Consensus 119 ~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y-----~~dIvygT~g 180 (896)
T PRK13104 119 NAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY-----KADIVYGTNN 180 (896)
T ss_pred HHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh-----CCCEEEECCh
Confidence 33446789999999999998888887754 378899999999988875544 5789999983
No 281
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=40.26 E-value=29 Score=40.88 Aligned_cols=39 Identities=18% Similarity=0.417 Sum_probs=25.8
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
...+++||||+|+|....| +.|..+++.-|....+||.+
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEE
Confidence 4578999999999876543 44555666666555555544
No 282
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=39.55 E-value=1e+02 Score=35.75 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=49.8
Q ss_pred HHcCCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecccccCCCc
Q 008461 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDF 198 (564)
Q Consensus 127 ~~~~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~arGLD~ 198 (564)
....+.+++|.++|..-|...++.+..+. -|+.+.++.|++++..|...+ ...|+++|.- +-|.|+
T Consensus 140 ~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y-----~~dIvygT~~-e~~FDy 207 (656)
T PRK12898 140 AALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY-----GADITYCTNK-ELVFDY 207 (656)
T ss_pred HhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc-----CCCEEEECCC-chhhhh
Confidence 33447899999999999988888777642 478999999999877655432 5688888884 556666
No 283
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=39.55 E-value=1.1e+02 Score=34.33 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=61.0
Q ss_pred HHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec------cccc
Q 008461 123 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD------VASR 194 (564)
Q Consensus 123 ~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd------v~ar 194 (564)
...|....+ ++|+..+|+--|...++.+.+.. |.-.+..+.|..++.+|...+. +.+|+|||+ +.+=
T Consensus 51 ~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~----~~kVfvaTPQvveNDl~~G 125 (542)
T COG1111 51 ANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA----KKKVFVATPQVVENDLKAG 125 (542)
T ss_pred HHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh----hCCEEEeccHHHHhHHhcC
Confidence 345555544 88888999988888888877652 3345789999999999986654 467999997 3343
Q ss_pred CCCcCCCCcEEEEcCCC
Q 008461 195 GLDFNKAVDWVVQVDCP 211 (564)
Q Consensus 195 GLD~pp~V~~VI~~d~P 211 (564)
-||+ .+|.++|.=.+-
T Consensus 126 rid~-~dv~~lifDEAH 141 (542)
T COG1111 126 RIDL-DDVSLLIFDEAH 141 (542)
T ss_pred ccCh-HHceEEEechhh
Confidence 4898 889998865543
No 284
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=39.53 E-value=43 Score=31.82 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=22.6
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEE
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~ll 69 (564)
..-.++||||+|++.... .+.+...++..|+..-+++
T Consensus 95 ~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il 131 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFIL 131 (188)
T ss_pred CCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEE
Confidence 567899999999986532 3445555555443333333
No 285
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.87 E-value=36 Score=38.24 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=27.2
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
.+.+++||||||+|....| +.+..+++..|....+++.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998876543 45556677666666666544
No 286
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=38.78 E-value=33 Score=30.25 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=31.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCC--CeeeccCCCCH
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGI--PLMCLYGRMKQ 169 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi--~v~~lHg~m~~ 169 (564)
...+++|||.+...+...+..|... |+ .+..+.||+..
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~--G~~~~v~~l~GG~~~ 110 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKEL--GLERFVRDIIGGLKA 110 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHc--CCccceeeecchHHH
Confidence 3678999999988888888889876 77 68999999854
No 287
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=38.44 E-value=70 Score=34.75 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=27.0
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCCh
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK 76 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~ 76 (564)
.+.+++||||||+|.... .+.+..+++.-|+.. ++++.+|-+.
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~ 158 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPE 158 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChH
Confidence 567899999999986543 455656665544444 4444454343
No 288
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=37.95 E-value=38 Score=31.72 Aligned_cols=43 Identities=21% Similarity=0.429 Sum_probs=30.7
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCC
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 75 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~ 75 (564)
...+++|||+||.|... ..+.+..+++.-|.+..++|.|....
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 56889999999987654 46777778887776666766665533
No 289
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=37.85 E-value=38 Score=32.49 Aligned_cols=53 Identities=21% Similarity=0.416 Sum_probs=43.1
Q ss_pred CCcceEEEeccCccCcccH--HHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 32 SQLQILILDEADRILDVGF--KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf--~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
...++|||||+=..+..|+ ...+..++...|...-+|+..-..|+.+.+++.+
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 5679999999998777774 3567788888898888888888899888877754
No 290
>PF13173 AAA_14: AAA domain
Probab=37.49 E-value=40 Score=29.94 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=26.7
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEecc
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 73 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSAT 73 (564)
.-.+|||||+|.+.+ +...+..+.... ++.++++.+-.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 456899999999864 577788887765 35566554433
No 291
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=37.37 E-value=81 Score=35.03 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=52.9
Q ss_pred cEEEEeCChHHHHHHHHHHH---hhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec-----cccc---CCCcCC
Q 008461 133 KILVFLTSCKQVKYVFEAFK---KLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-----VASR---GLDFNK 200 (564)
Q Consensus 133 k~IVF~~t~k~v~~l~e~L~---~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd-----v~ar---GLD~pp 200 (564)
-.||..+|+.-+..+.+.+. ...+.+.+..+-||++.. +-+..|++ ..+|||+|+ ++.+ ++++ .
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~-r 156 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSF-R 156 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhhccc-c
Confidence 57999999988877766543 335788899999997764 45677888 889999997 4443 5666 6
Q ss_pred CCcEEEE
Q 008461 201 AVDWVVQ 207 (564)
Q Consensus 201 ~V~~VI~ 207 (564)
++.++|.
T Consensus 157 sLe~LVL 163 (567)
T KOG0345|consen 157 SLEILVL 163 (567)
T ss_pred ccceEEe
Confidence 6777765
No 292
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.16 E-value=58 Score=33.10 Aligned_cols=45 Identities=27% Similarity=0.331 Sum_probs=33.7
Q ss_pred CCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCCh
Q 008461 31 CSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK 76 (564)
Q Consensus 31 ~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~ 76 (564)
....+++||||||.|-+ |-+..++..++...+..++.|...+-.+
T Consensus 111 ~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~s~K 155 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQSEK 155 (333)
T ss_pred CCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcchhh
Confidence 45678999999998765 5678888888888777777666555443
No 293
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=37.00 E-value=66 Score=35.56 Aligned_cols=73 Identities=11% Similarity=0.186 Sum_probs=43.0
Q ss_pred CCcEEEEcHHHHHHHHhcC---CC---C--CCCCcceEEEeccCccCccc-HHHHHHHHHHhC-CCCCcEEEEeccCChh
Q 008461 8 ELNILVCTPGRLLQHMDET---PN---F--DCSQLQILILDEADRILDVG-FKKALNAIVSQL-PKHRQTFLFSATQTKS 77 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~---~~---~--~~~~L~~lVlDEAD~lld~g-f~~~l~~Il~~l-p~~~Q~llfSATl~~~ 77 (564)
+..++..|...+...+... .. + ...+.++|+|||+|.+.... ....+..++..+ ....|+++.|.+.|..
T Consensus 169 ~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 169 GGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQD 248 (445)
T ss_pred CCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHH
Confidence 5677888877665443211 01 0 14678899999999886532 244455555443 2356776666666665
Q ss_pred HHH
Q 008461 78 VQD 80 (564)
Q Consensus 78 v~~ 80 (564)
+..
T Consensus 249 l~~ 251 (445)
T PRK12422 249 LKA 251 (445)
T ss_pred Hhh
Confidence 543
No 294
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=36.94 E-value=53 Score=35.08 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=27.0
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
....++||||||.|-.. -.+.+..+++.-|....++++|
T Consensus 140 g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 56789999999987544 3456666777655555556664
No 295
>PF12846 AAA_10: AAA-like domain
Probab=36.48 E-value=30 Score=34.81 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=28.4
Q ss_pred CCcceEEEeccCccCccc-HHHHHHHHHHhCCCCCcEEEEeccCCh
Q 008461 32 SQLQILILDEADRILDVG-FKKALNAIVSQLPKHRQTFLFSATQTK 76 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~g-f~~~l~~Il~~lp~~~Q~llfSATl~~ 76 (564)
..-.++|+||||.++... +...+..++.... ...+.++-||+..
T Consensus 219 ~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~R-k~g~~~~l~tQ~~ 263 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNPSGAEFLDELLREGR-KYGVGLILATQSP 263 (304)
T ss_pred CceEEEEeCCccccccccchhhhhhHHHHHHH-hcCCEEEEeeCCH
Confidence 344688999999988863 4455556665543 3455666667554
No 296
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=36.41 E-value=40 Score=30.11 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=29.4
Q ss_pred CCCcEEEEeC-ChHHHHHHHHHHHhhCCCCCeeeccCCCCH
Q 008461 130 LNSKILVFLT-SCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 169 (564)
Q Consensus 130 ~~~k~IVF~~-t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~ 169 (564)
...++||||. +...+..++..|..+ |+.+..+.||+..
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~--G~~v~~L~GG~~a 123 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESL--GIDVPLLEGGYKA 123 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHc--CCceeEeCCcHHH
Confidence 3678999996 555666777788765 8889999999764
No 297
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=36.18 E-value=72 Score=35.47 Aligned_cols=70 Identities=17% Similarity=0.437 Sum_probs=48.0
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec-----ccccC-CCcCCCC
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-----VASRG-LDFNKAV 202 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd-----v~arG-LD~pp~V 202 (564)
..+||..||+.-|..+|+.-++.. .++.+...+|+.+ ......+.. .+.|||||. ++.+| |.+ +++
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~----~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l-~~~ 227 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTD----LGAQLRFIKRGCDILVATPGRLKDLIERGKISL-DNC 227 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcc----hhhhhhhhccCccEEEecCchhhhhhhcceeeh-hhC
Confidence 578999999999999999877642 3456677777732 233344555 889999996 45555 555 555
Q ss_pred cEEE
Q 008461 203 DWVV 206 (564)
Q Consensus 203 ~~VI 206 (564)
.++|
T Consensus 228 k~~v 231 (482)
T KOG0335|consen 228 KFLV 231 (482)
T ss_pred cEEE
Confidence 5444
No 298
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=35.86 E-value=57 Score=38.69 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=54.6
Q ss_pred cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCC--CCce-----------EEEEeCcchHHHHHHH
Q 008461 182 KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN--SGGR-----------SVLFLTPTEMKMLEKL 248 (564)
Q Consensus 182 ~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g--~~G~-----------~il~l~~~e~~~l~~L 248 (564)
..+.||+--++-.|.|= |+|=.++-+....|..+=+|.|||.-|.- ..|. -.+++..++..+++.|
T Consensus 483 plRFIFS~waLrEGWDN-PNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 483 PLRFIFSKWALREGWDN-PNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred cceeeeehhHHhhcCCC-CCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 45799999999999997 99999999999999999999999999953 2332 2335556666688887
Q ss_pred HH
Q 008461 249 RE 250 (564)
Q Consensus 249 ~~ 250 (564)
..
T Consensus 562 qk 563 (985)
T COG3587 562 QK 563 (985)
T ss_pred HH
Confidence 65
No 299
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=35.50 E-value=81 Score=36.26 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=26.1
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
...+++||||+|+|.... .+.+...++..|....+||.+
T Consensus 131 a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred CCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 567899999999987543 344555566556565666654
No 300
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=35.31 E-value=43 Score=27.93 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=28.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 168 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~ 168 (564)
+.++++||.+-..+...+..|..+ |+.+..+.||+.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~--G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQM--GWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHc--CCEEEEecCcHH
Confidence 568999999877777777778765 777888899874
No 301
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.11 E-value=70 Score=36.68 Aligned_cols=42 Identities=33% Similarity=0.456 Sum_probs=27.2
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCC
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 75 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~ 75 (564)
...+++||||||+|.... .+.|..+++..|...-+||.+ |-+
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~ 158 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEP 158 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CCh
Confidence 567899999999987543 445555666555555555544 444
No 302
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=35.10 E-value=56 Score=27.54 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=28.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCC-eeeccCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMK 168 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~-v~~lHg~m~ 168 (564)
..+++|+|.+...+..++..|..+ |+. +..+.||+.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~--G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKC--GVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHc--CCCCEEEEeCcHH
Confidence 578999999887788888888775 664 778999875
No 303
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=35.03 E-value=54 Score=28.62 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=29.5
Q ss_pred CCCcEEEEeCC-hHHHHHHHHHHHhhCCCCC-eeeccCCCCH
Q 008461 130 LNSKILVFLTS-CKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 169 (564)
Q Consensus 130 ~~~k~IVF~~t-~k~v~~l~e~L~~l~~gi~-v~~lHg~m~~ 169 (564)
...++||||.+ ...+..++..|... |+. +..+-|++..
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~--G~~~v~~l~GG~~~ 117 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYF--GHENVRVLDGGLQA 117 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHc--CCCCEEEecCCHHH
Confidence 36789999988 57787788888775 654 8888898754
No 304
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=34.79 E-value=36 Score=42.27 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=51.3
Q ss_pred CCCcEEEEcHHHHHHHHhcCC--------------CCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEec
Q 008461 7 NELNILVCTPGRLLQHMDETP--------------NFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 72 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~--------------~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSA 72 (564)
.|+.|.+..||.-.+.|..-+ .+.+....+.||||+|.-||.-....+..++..+.++.|+|+.|-
T Consensus 1048 ~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvITh 1127 (1163)
T COG1196 1048 AGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITH 1127 (1163)
T ss_pred cCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEc
Confidence 378899999998766443211 112445578999999999998888888888888889999999975
Q ss_pred c
Q 008461 73 T 73 (564)
Q Consensus 73 T 73 (564)
-
T Consensus 1128 r 1128 (1163)
T COG1196 1128 R 1128 (1163)
T ss_pred C
Confidence 4
No 305
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=34.65 E-value=72 Score=27.29 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=29.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCC-C-eeeccCCCCH
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGI-P-LMCLYGRMKQ 169 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~-v~~lHg~m~~ 169 (564)
..+++|||.+.......+..|... |+ . +..+.||+..
T Consensus 66 ~~~ivv~C~~G~rs~~a~~~L~~~--G~~~~v~~l~gG~~~ 104 (109)
T cd01533 66 RTPIVVNCAGRTRSIIGAQSLINA--GLPNPVAALRNGTQG 104 (109)
T ss_pred CCeEEEECCCCchHHHHHHHHHHC--CCCcceeEecCCHHH
Confidence 568999998877777777888775 77 3 7889999854
No 306
>PTZ00424 helicase 45; Provisional
Probab=34.60 E-value=1.7e+02 Score=31.08 Aligned_cols=75 Identities=8% Similarity=0.034 Sum_probs=50.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc------ccCCCcCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA------SRGLDFNKAV 202 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~------arGLD~pp~V 202 (564)
..++||+++|+.-+..+++.+.... .++.+..+.|+..... .+..+.....|+|+|.-. .+.+.+ ..+
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l-~~i 171 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRD---DINKLKAGVHMVVGTPGRVYDMIDKRHLRV-DDL 171 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHH---HHHHHcCCCCEEEECcHHHHHHHHhCCccc-ccc
Confidence 5689999999999988888777653 2345566677766432 233344456899999722 234566 678
Q ss_pred cEEEEcC
Q 008461 203 DWVVQVD 209 (564)
Q Consensus 203 ~~VI~~d 209 (564)
++||.=.
T Consensus 172 ~lvViDE 178 (401)
T PTZ00424 172 KLFILDE 178 (401)
T ss_pred cEEEEec
Confidence 8888543
No 307
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=34.43 E-value=45 Score=28.17 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=29.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMK 168 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~ 168 (564)
..++||||.+...+......|..+ |+ .+..+.|++.
T Consensus 66 ~~~ivv~c~~g~~s~~~~~~l~~~--G~~~v~~~~Gg~~ 102 (106)
T cd01519 66 DKELIFYCKAGVRSKAAAELARSL--GYENVGNYPGSWL 102 (106)
T ss_pred CCeEEEECCCcHHHHHHHHHHHHc--CCccceecCCcHH
Confidence 579999999988888888888775 66 4777888874
No 308
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=34.21 E-value=43 Score=32.52 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=26.5
Q ss_pred CCcceEEEeccCccCcc-cHHHHHHHHHHhCCCCCcEEEEeccCC
Q 008461 32 SQLQILILDEADRILDV-GFKKALNAIVSQLPKHRQTFLFSATQT 75 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~-gf~~~l~~Il~~lp~~~Q~llfSATl~ 75 (564)
.+..+|||||+|.+... .....+..++..+......+++|++.+
T Consensus 89 ~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 89 EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 34578999999987653 235566666655432223455555543
No 309
>PHA03371 circ protein; Provisional
Probab=34.15 E-value=33 Score=34.17 Aligned_cols=46 Identities=28% Similarity=0.520 Sum_probs=30.4
Q ss_pred ccccCCCcCCCCcEE-EEcCCCCC-------------HhhHHHHhcccccCCCCceEEEEe
Q 008461 191 VASRGLDFNKAVDWV-VQVDCPED-------------VASYIHRVGRTARYNSGGRSVLFL 237 (564)
Q Consensus 191 v~arGLD~pp~V~~V-I~~d~P~s-------------~~~YiqRiGRtgR~g~~G~~il~l 237 (564)
+++|-||+ |+=+-+ |..|++.+ --.|+|.||||--.|..-+-++++
T Consensus 29 LaGR~vDL-PgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iyl 88 (240)
T PHA03371 29 LAGRTVDL-PGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIYL 88 (240)
T ss_pred hcCcceec-CCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEEE
Confidence 46888999 777777 87777654 446788999985555333333333
No 310
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=33.62 E-value=54 Score=32.03 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=42.9
Q ss_pred CCCcceEEEeccCccCcccH--HHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 31 CSQLQILILDEADRILDVGF--KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 31 ~~~L~~lVlDEAD~lld~gf--~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
-...++|||||+=..++.|+ ...+..++...|...-+|+.--..|+.+.+++.+
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADl 168 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADL 168 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCch
Confidence 35679999999998888885 3567778888887777777777788888877755
No 311
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=33.53 E-value=62 Score=39.92 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=63.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecccccCCCcCCCCcEEEEcCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDC 210 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~arGLD~pp~V~~VI~~d~ 210 (564)
..++|||..-.....-+...|.. .++..... |+ -..-...+..|++-...|+-+...+-|+|+ -...+|++.++
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~--N~I~~~~~-~~--t~d~~dc~~~fk~I~clll~~~~~~~GLNL-~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLM--NLIKKQLD-GE--TEDFDDCIICFKSIDCLLLFVSKGSKGLNL-IEATHVFLVEP 1294 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHh--hhhHhhhc-cC--CcchhhhhhhcccceEEEEEeccCcccccH-Hhhhhhheecc
Confidence 46888888654444444333322 23322211 21 122344555666533456667778999999 88999999999
Q ss_pred CCCHhhHHHHhcccccCCCC
Q 008461 211 PEDVASYIHRVGRTARYNSG 230 (564)
Q Consensus 211 P~s~~~YiqRiGRtgR~g~~ 230 (564)
-.++..=.|.+||+.|.|+.
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~ 1314 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQK 1314 (1394)
T ss_pred ccCchHHHhhhhhhhhcccc
Confidence 99999999999999999974
No 312
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=33.49 E-value=58 Score=26.84 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=30.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMK 168 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~ 168 (564)
...++||+|++...+...+..|... |+ .+..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~--G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREA--GFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHc--CCceEEEcCCCHH
Confidence 3679999999999999999999876 55 5778888864
No 313
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=33.45 E-value=49 Score=31.92 Aligned_cols=53 Identities=17% Similarity=0.326 Sum_probs=42.5
Q ss_pred CCcceEEEeccCccCcccHH--HHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 32 SQLQILILDEADRILDVGFK--KALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~--~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
...++|||||+=..++.|+- ..+..+++..|...-+|+.--..|+.+.+++.+
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~ 168 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQ 168 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCe
Confidence 56799999999988888753 677888888888878888777888887776643
No 314
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=33.16 E-value=1.1e+02 Score=32.22 Aligned_cols=39 Identities=10% Similarity=0.260 Sum_probs=26.8
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEec
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 72 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSA 72 (564)
...+++|||+||.|-.. -.+.+..+++.-| +..++|.|.
T Consensus 123 ~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 123 APRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEEC
Confidence 57799999999987554 3556666676666 554555443
No 315
>PRK07413 hypothetical protein; Validated
Probab=33.14 E-value=1.8e+02 Score=31.56 Aligned_cols=53 Identities=21% Similarity=0.406 Sum_probs=43.3
Q ss_pred CCcceEEEeccCccCcccHH--HHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 32 SQLQILILDEADRILDVGFK--KALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~--~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
...++|||||+-..++.|+- ..+..++...|...-+|+.--..|+.+.+++.+
T Consensus 124 g~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADl 178 (382)
T PRK07413 124 GLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADL 178 (382)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCe
Confidence 56799999999988888753 567788888888888888888899888887764
No 316
>PRK08084 DNA replication initiation factor; Provisional
Probab=33.03 E-value=39 Score=33.67 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=27.0
Q ss_pred CCcceEEEeccCccCc-ccHHHHHHHHHHhCCC-CCcEEEEeccCCh
Q 008461 32 SQLQILILDEADRILD-VGFKKALNAIVSQLPK-HRQTFLFSATQTK 76 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld-~gf~~~l~~Il~~lp~-~~Q~llfSATl~~ 76 (564)
.+.++|||||+|.+.. ..+...+..++..+.. ....+++|++.++
T Consensus 96 ~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 96 EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 3457899999998764 3345566666665432 2324555555443
No 317
>PRK04132 replication factor C small subunit; Provisional
Probab=32.59 E-value=81 Score=37.76 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=26.6
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEE
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llf 70 (564)
+..++||||||+|.. +-+..+..+++..|....+++.
T Consensus 630 ~~KVvIIDEaD~Lt~-~AQnALLk~lEep~~~~~FILi 666 (846)
T PRK04132 630 SFKIIFLDEADALTQ-DAQQALRRTMEMFSSNVRFILS 666 (846)
T ss_pred CCEEEEEECcccCCH-HHHHHHHHHhhCCCCCeEEEEE
Confidence 568999999999865 3466777777776655555555
No 318
>PRK02362 ski2-like helicase; Provisional
Probab=32.41 E-value=64 Score=37.95 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=51.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhC-CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----ccccCC-CcCCCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRGL-DFNKAV 202 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~-~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~arGL-D~pp~V 202 (564)
.+.++|+.+|++.-|...+..|.... .|+.+..++|+...... +.....|+|||. ++..+. -+ ..+
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~------~l~~~~IiV~Tpek~~~llr~~~~~l-~~v 138 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE------WLGDNDIIVATSEKVDSLLRNGAPWL-DDI 138 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc------ccCCCCEEEECHHHHHHHHhcChhhh-hhc
Confidence 36799999999999999999988642 27889999998765321 112568999995 222232 24 568
Q ss_pred cEEEEcC
Q 008461 203 DWVVQVD 209 (564)
Q Consensus 203 ~~VI~~d 209 (564)
.+||.=.
T Consensus 139 ~lvViDE 145 (737)
T PRK02362 139 TCVVVDE 145 (737)
T ss_pred CEEEEEC
Confidence 8888644
No 319
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.36 E-value=64 Score=36.44 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=26.1
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
...+++||||||+|.... .+.+...++..|....++|.+
T Consensus 118 ~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 567899999999887644 334555555555556566554
No 320
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.10 E-value=43 Score=37.93 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=31.6
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEecc
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 73 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSAT 73 (564)
....+||||+|.=....-...+-.-+..+....|++++|--
T Consensus 453 ~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHl 493 (557)
T COG0497 453 DTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHL 493 (557)
T ss_pred CCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecH
Confidence 45689999999744433456777778889999999998754
No 321
>PF10141 ssDNA-exonuc_C: Single-strand DNA-specific exonuclease, C terminal domain; InterPro: IPR018779 This entry represents a domain found at the C terminus of a set of single-stranded DNA-specific exonucleases, including RecJ. Its function has not, as yet, been determined.
Probab=32.05 E-value=94 Score=30.21 Aligned_cols=82 Identities=16% Similarity=0.314 Sum_probs=51.5
Q ss_pred CCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHHHHcCCCccccccccccchhHHHHHHHHHhcC
Q 008461 200 KAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKY 279 (564)
Q Consensus 200 p~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~~i~i~~~~~~~~~~~~i~~~l~~~~~~~ 279 (564)
..++.||.+|||.+.+.+-+.+ . .+.....++++...+..++. ++|
T Consensus 50 ~~~~~lVl~D~P~~~~~l~~~l-~---~~~~~~Iyl~f~~~~~~y~~-----~~P------------------------- 95 (195)
T PF10141_consen 50 ESYDNLVLLDLPPSLEQLKELL-Q---QQQPERIYLLFYQQDSAYFE-----GMP------------------------- 95 (195)
T ss_pred ccCCEEEEEeCCCCHHHHHHHH-H---hCCcceEEEEECCccchhhc-----CCC-------------------------
Confidence 4689999999999999988877 2 34455666666544332221 121
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHhcCCCCC
Q 008461 280 PDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMT 325 (564)
Q Consensus 280 ~~l~~~a~~af~sy~rs~~~~~~k~if~~~~l~l~~~A~s~GL~~~ 325 (564)
. ...|..+++.++.+. -|++.. ++.++|+.+||+..
T Consensus 96 -~-----Re~F~~~Y~~l~~~~---~~~l~~-~~~~La~~l~i~~~ 131 (195)
T PF10141_consen 96 -T-----REQFKKLYKFLKQHP---NFDLKE-QLQALAKYLGISPD 131 (195)
T ss_pred -C-----HHHHHHHHHHHHhCC---CCCHHH-HHHHHHHHHCcCHH
Confidence 1 124556666655543 355554 47789999998654
No 322
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=31.56 E-value=73 Score=36.70 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=44.8
Q ss_pred CCcEEEEcHHHHHHHHhcC---CC---C--CCCCcceEEEeccCccCccc-HHHHHHHHHHhCCC-CCcEEEEeccCChh
Q 008461 8 ELNILVCTPGRLLQHMDET---PN---F--DCSQLQILILDEADRILDVG-FKKALNAIVSQLPK-HRQTFLFSATQTKS 77 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~---~~---~--~~~~L~~lVlDEAD~lld~g-f~~~l~~Il~~lp~-~~Q~llfSATl~~~ 77 (564)
+..+++.|...|+..+... .. | .+.++++||||++|.+.... ....+..++..+.. +.++|+.|-..|..
T Consensus 344 g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 344 GTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred CCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 5678888887776444211 00 1 13567899999999886533 34556666666544 46777766665555
Q ss_pred HH
Q 008461 78 VQ 79 (564)
Q Consensus 78 v~ 79 (564)
+.
T Consensus 424 L~ 425 (617)
T PRK14086 424 LV 425 (617)
T ss_pred hh
Confidence 43
No 323
>PRK14974 cell division protein FtsY; Provisional
Probab=30.98 E-value=1e+02 Score=32.82 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=41.4
Q ss_pred CCcceEEEeccCccC-cccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 32 SQLQILILDEADRIL-DVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 32 ~~L~~lVlDEAD~ll-d~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+.++|++|.|.++. +......+..+...+.+..-++++|||........++.+.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 356799999999876 4456677888887777777788899998776666565543
No 324
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=30.96 E-value=79 Score=25.16 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=30.8
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCC
Q 008461 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 168 (564)
Q Consensus 129 ~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~ 168 (564)
....++||||.+...+..++..|... ....+..+-|++.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~-G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKA-GGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHh-CcccEEEecCChh
Confidence 34689999999999999999999886 2345778888864
No 325
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.87 E-value=73 Score=33.99 Aligned_cols=38 Identities=24% Similarity=0.423 Sum_probs=23.6
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEE
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llf 70 (564)
...+++||||||.+....+ +.+...++..|....+++.
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEE
Confidence 4568999999999875443 3344445544544455554
No 326
>PRK08181 transposase; Validated
Probab=30.61 E-value=1.2e+02 Score=31.17 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=42.6
Q ss_pred CCCcEEEEcHHHHHHHHhcCC---CC-----CCCCcceEEEeccCccCccc-HHHHHHHHHHhCCCCCcEEEEeccCCh
Q 008461 7 NELNILVCTPGRLLQHMDETP---NF-----DCSQLQILILDEADRILDVG-FKKALNAIVSQLPKHRQTFLFSATQTK 76 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~---~~-----~~~~L~~lVlDEAD~lld~g-f~~~l~~Il~~lp~~~Q~llfSATl~~ 76 (564)
.+..+++.|...|+..+.... .+ .+.+.++|||||.+.+.... ....+..|+........+++.|...+.
T Consensus 133 ~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~ 211 (269)
T PRK08181 133 NGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFG 211 (269)
T ss_pred cCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 356677777777776653221 11 14577999999999764433 235667777665444566666555444
No 327
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=30.59 E-value=71 Score=27.61 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.6
Q ss_pred cceEEEeccCccCccc
Q 008461 34 LQILILDEADRILDVG 49 (564)
Q Consensus 34 L~~lVlDEAD~lld~g 49 (564)
-.+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4799999999988765
No 328
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=30.57 E-value=86 Score=34.55 Aligned_cols=73 Identities=14% Similarity=0.366 Sum_probs=41.8
Q ss_pred CCcEEEEcHHHHHHHHhcC---CC---CC--C-CCcceEEEeccCccCccc-HHHHHHHHHHhCCC-CCcEEEEeccCCh
Q 008461 8 ELNILVCTPGRLLQHMDET---PN---FD--C-SQLQILILDEADRILDVG-FKKALNAIVSQLPK-HRQTFLFSATQTK 76 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~---~~---~~--~-~~L~~lVlDEAD~lld~g-f~~~l~~Il~~lp~-~~Q~llfSATl~~ 76 (564)
+..+++.|...++..+... .. |. . .+.++|||||+|.+++.. ....+..++..+.. ..|+++.|...|.
T Consensus 160 ~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~ 239 (440)
T PRK14088 160 DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_pred CCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHH
Confidence 4678888888876554321 00 00 1 257899999999886542 33445555554433 3455555555555
Q ss_pred hHHH
Q 008461 77 SVQD 80 (564)
Q Consensus 77 ~v~~ 80 (564)
.+..
T Consensus 240 ~l~~ 243 (440)
T PRK14088 240 KLSE 243 (440)
T ss_pred HHHH
Confidence 4443
No 329
>PF09805 Nop25: Nucleolar protein 12 (25kDa); InterPro: IPR019186 Nop12 is a novel nucleolar protein required for pre-large subunit rRNA processing and in yeast normal rates of cell growth at low temperatures [].
Probab=30.50 E-value=1.6e+02 Score=27.09 Aligned_cols=9 Identities=44% Similarity=0.774 Sum_probs=6.9
Q ss_pred CceEEecCC
Q 008461 414 GTRLVFDEE 422 (564)
Q Consensus 414 ~~~~~f~~~ 422 (564)
..-|+||++
T Consensus 10 ~~ev~FD~~ 18 (137)
T PF09805_consen 10 KEEVVFDEK 18 (137)
T ss_pred CceEEcChH
Confidence 568999874
No 330
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=30.40 E-value=43 Score=27.97 Aligned_cols=37 Identities=11% Similarity=0.264 Sum_probs=28.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCC-eeeccCCCCH
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 169 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~-v~~lHg~m~~ 169 (564)
..+++|||.+...+...+..|... |+. +..+.|++..
T Consensus 61 ~~~ivv~c~~g~~s~~~~~~l~~~--G~~~v~~l~Gg~~~ 98 (103)
T cd01447 61 DKPFVFYCASGWRSALAGKTLQDM--GLKPVYNIEGGFKD 98 (103)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHc--ChHHhEeecCcHHH
Confidence 578999998877777788888775 665 7788888643
No 331
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=30.39 E-value=64 Score=27.77 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=28.8
Q ss_pred CCcEEEEeCCh--HHHHHHHHHHHhhCCCCCeeeccCCCCH
Q 008461 131 NSKILVFLTSC--KQVKYVFEAFKKLRPGIPLMCLYGRMKQ 169 (564)
Q Consensus 131 ~~k~IVF~~t~--k~v~~l~e~L~~l~~gi~v~~lHg~m~~ 169 (564)
..++||||++. ..+..++..|..+ |+.+..+.|++..
T Consensus 64 ~~~vvvyc~~g~~~~s~~~a~~l~~~--G~~v~~l~GG~~~ 102 (110)
T cd01521 64 EKLFVVYCDGPGCNGATKAALKLAEL--GFPVKEMIGGLDW 102 (110)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHc--CCeEEEecCCHHH
Confidence 67899999864 4677777788775 7788889998754
No 332
>PRK00254 ski2-like helicase; Provisional
Probab=30.20 E-value=1.4e+02 Score=35.14 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=51.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC-CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----ccccC-CCcCCCCc
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAVD 203 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~-~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~arG-LD~pp~V~ 203 (564)
+.++|+.+|++..+...+..|..+. .|+.+..++|+.+...+ +.....|+|+|. ++..+ .-+ ..+.
T Consensus 68 ~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~------~~~~~~IiV~Tpe~~~~ll~~~~~~l-~~l~ 140 (720)
T PRK00254 68 GGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE------WLGKYDIIIATAEKFDSLLRHGSSWI-KDVK 140 (720)
T ss_pred CCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh------hhccCCEEEEcHHHHHHHHhCCchhh-hcCC
Confidence 5789999999999999998887531 37889999999875421 223678999994 22222 335 6788
Q ss_pred EEEEcC
Q 008461 204 WVVQVD 209 (564)
Q Consensus 204 ~VI~~d 209 (564)
+||.=.
T Consensus 141 lvViDE 146 (720)
T PRK00254 141 LVVADE 146 (720)
T ss_pred EEEEcC
Confidence 888644
No 333
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=30.09 E-value=82 Score=26.14 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=27.1
Q ss_pred CCcEEEEeCC--hHHHHHHHHHHHhhCCCC-CeeeccCCCC
Q 008461 131 NSKILVFLTS--CKQVKYVFEAFKKLRPGI-PLMCLYGRMK 168 (564)
Q Consensus 131 ~~k~IVF~~t--~k~v~~l~e~L~~l~~gi-~v~~lHg~m~ 168 (564)
..++||||.+ +..+...+..|... |+ .+..+.||+.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~--G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSEL--GYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHc--CccCEEEccCCHH
Confidence 5789999998 44466777788765 55 5788899875
No 334
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=29.99 E-value=1.6e+02 Score=35.12 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec
Q 008461 121 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 190 (564)
Q Consensus 121 ~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd 190 (564)
.|..++....+..+-|.++|.--|..-++.+..++. |+.+.++.|+++..+|...+. ..|+++|.
T Consensus 112 ~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~-----~dI~ygT~ 178 (830)
T PRK12904 112 TLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA-----ADITYGTN 178 (830)
T ss_pred HHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC-----CCeEEECC
Confidence 333444455567788999998877777776666532 889999999999998877753 67888887
No 335
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=29.91 E-value=64 Score=27.15 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=30.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCCH
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 169 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~~ 169 (564)
...+++|||++...+...+..|... |+ .+..+.||+..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~--G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQ--GFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHc--CCccEEEecCCHHH
Confidence 3679999999987777778888774 66 47889998764
No 336
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=29.87 E-value=1.7e+02 Score=34.89 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=47.2
Q ss_pred HHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCC-HHHHHHHHHHHhccCCeEEEec
Q 008461 123 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMK-QDRRMAIYAQFCEKRSVLFCTD 190 (564)
Q Consensus 123 ~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~-~~~R~~i~~~F~~~~~VLVaTd 190 (564)
..++....+..++|.++|..-|...++.+..+. -|+.+.++.|+++ ..+|..++ ...|+++|.
T Consensus 111 p~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y-----~~dIvygT~ 176 (790)
T PRK09200 111 PLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY-----EADIIYTTN 176 (790)
T ss_pred HHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc-----CCCEEEECC
Confidence 333444557899999999988888777766542 4889999999999 77776332 478999994
No 337
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=29.58 E-value=72 Score=35.26 Aligned_cols=72 Identities=13% Similarity=0.213 Sum_probs=44.3
Q ss_pred CCCcEEEEcHHHHHHHHhcC-----CCC-----CCCCcceEEEeccCccCcc-cHHHHHHHHHHhCCC-CCcEEEEeccC
Q 008461 7 NELNILVCTPGRLLQHMDET-----PNF-----DCSQLQILILDEADRILDV-GFKKALNAIVSQLPK-HRQTFLFSATQ 74 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~-----~~~-----~~~~L~~lVlDEAD~lld~-gf~~~l~~Il~~lp~-~~Q~llfSATl 74 (564)
.+..|++.|+..++..+... ..+ ...+.++|||||+|.+... .....+..++..+.. ..|+++.|-..
T Consensus 170 ~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~ 249 (450)
T PRK14087 170 SDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKS 249 (450)
T ss_pred CCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 35778888888877655321 001 1467889999999987642 234556666655433 34666666665
Q ss_pred ChhH
Q 008461 75 TKSV 78 (564)
Q Consensus 75 ~~~v 78 (564)
|...
T Consensus 250 P~~l 253 (450)
T PRK14087 250 PELL 253 (450)
T ss_pred HHHH
Confidence 5444
No 338
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=29.51 E-value=60 Score=36.80 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=27.4
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
...+++||||||+|.... .+.+..+++..|+...+++++
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 567899999999986543 455666666666666666654
No 339
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=29.51 E-value=70 Score=26.68 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=29.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCCH
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 169 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~~ 169 (564)
..+++|||++...+...+..|.+. |+ .+..+.|++..
T Consensus 54 ~~~iv~~c~~g~~s~~~~~~L~~~--g~~~v~~l~gG~~~ 91 (99)
T cd01527 54 ANAIIFHCRSGMRTQQNAERLAAI--SAGEAYVLEGGLDA 91 (99)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHc--CCccEEEeeCCHHH
Confidence 579999999988788888888775 44 68889998743
No 340
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=29.41 E-value=1.4e+02 Score=30.77 Aligned_cols=126 Identities=15% Similarity=0.175 Sum_probs=68.3
Q ss_pred cEEEEeccCChhHHHH------HHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHH---cCCCcEEE
Q 008461 66 QTFLFSATQTKSVQDL------ARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKA---HLNSKILV 136 (564)
Q Consensus 66 Q~llfSATl~~~v~~l------~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~---~~~~k~IV 136 (564)
.+.+++.|.+..-.++ ...+... .+.|..+.-+...-.+...+-|.. .+.-|+||
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~----------------~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIV 67 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV----------------MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIV 67 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH----------------EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEE
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc----------------eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEE
Confidence 4677888877665542 2222111 233333333333445555555544 45779999
Q ss_pred EeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecccccCCCcCC------CCcEEEEcCC
Q 008461 137 FLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNK------AVDWVVQVDC 210 (564)
Q Consensus 137 F~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~arGLD~pp------~V~~VI~~d~ 210 (564)
|++...-+-..++.+++.+|++- .+.|..... -.++ .+..++.+.+|-.+||-.+ + +....|+|.+
T Consensus 68 v~q~vpGt~~af~kIkekRpDIl--~ia~~~~ED--p~~i---~~~aDi~~~~D~~~~G~~i-~~~Ak~mGAktFVh~sf 139 (275)
T PF12683_consen 68 VSQAVPGTAEAFRKIKEKRPDIL--LIAGEPHED--PEVI---SSAADIVVNPDEISRGYTI-VWAAKKMGAKTFVHYSF 139 (275)
T ss_dssp EE-SS---HHHHHHHHHH-TTSE--EEESS--S---HHHH---HHHSSEEEE--HHHHHHHH-HHHHHHTT-S-EEEEEE
T ss_pred EeCCCcchHHHHHHHHhcCCCeE--EEcCCCcCC--HHHH---hhccCeEeccchhhccHHH-HHHHHHcCCceEEEEec
Confidence 99999988888888888888864 444432211 1111 2257899999999999888 4 5678888888
Q ss_pred CCCHh
Q 008461 211 PEDVA 215 (564)
Q Consensus 211 P~s~~ 215 (564)
|....
T Consensus 140 prhms 144 (275)
T PF12683_consen 140 PRHMS 144 (275)
T ss_dssp TTGGG
T ss_pred hhhcc
Confidence 87766
No 341
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=28.96 E-value=1.5e+02 Score=36.81 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=47.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc---cCCeEEEec
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTD 190 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~---~~~VLVaTd 190 (564)
...+||.++++..+..-...|.. .|+++..+.|+++..++..++..+.. ...||++|.
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~--~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQ--ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHh--CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 45789999999888744444444 38999999999999999999988865 678999998
No 342
>PRK06620 hypothetical protein; Validated
Probab=28.92 E-value=69 Score=31.57 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=23.1
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHhCCC-CCcEEEEeccCCh
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQLPK-HRQTFLFSATQTK 76 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~-~~Q~llfSATl~~ 76 (564)
+.++|+|||+|++-+ ..+..++..+.. ..|+++.|.|.|.
T Consensus 85 ~~d~lliDdi~~~~~----~~lf~l~N~~~e~g~~ilits~~~p~ 125 (214)
T PRK06620 85 KYNAFIIEDIENWQE----PALLHIFNIINEKQKYLLLTSSDKSR 125 (214)
T ss_pred cCCEEEEeccccchH----HHHHHHHHHHHhcCCEEEEEcCCCcc
Confidence 457899999996532 244455554433 3455554445554
No 343
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=28.46 E-value=83 Score=27.04 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=19.4
Q ss_pred CCCcceEEEeccCccCcccHHHHHHHHHHhC
Q 008461 31 CSQLQILILDEADRILDVGFKKALNAIVSQL 61 (564)
Q Consensus 31 ~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l 61 (564)
..+..+||+||++.+.. .....+..++..+
T Consensus 82 ~~~~~~lilDe~~~~~~-~~~~~~~~~i~~~ 111 (151)
T cd00009 82 KAKPGVLFIDEIDSLSR-GAQNALLRVLETL 111 (151)
T ss_pred cCCCeEEEEeChhhhhH-HHHHHHHHHHHhc
Confidence 34568999999998733 2344555555554
No 344
>PRK13767 ATP-dependent helicase; Provisional
Probab=28.45 E-value=1.6e+02 Score=35.51 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=50.3
Q ss_pred CcEEEEeCChHHHHHHHHHHHh--------------hCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc-----
Q 008461 132 SKILVFLTSCKQVKYVFEAFKK--------------LRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA----- 192 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~--------------l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~----- 192 (564)
.++|++++++..+..++..|.. ..+++.+...||+.++.+|...+ +....|||||.--
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l---~~~p~IlVtTPE~L~~ll 161 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML---KKPPHILITTPESLAILL 161 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH---hCCCCEEEecHHHHHHHh
Confidence 4689999999998877764431 11367789999999988775433 2367899999721
Q ss_pred -ccCC--CcCCCCcEEEEcC
Q 008461 193 -SRGL--DFNKAVDWVVQVD 209 (564)
Q Consensus 193 -arGL--D~pp~V~~VI~~d 209 (564)
.... .+ .++++||.=.
T Consensus 162 ~~~~~~~~l-~~l~~VVIDE 180 (876)
T PRK13767 162 NSPKFREKL-RTVKWVIVDE 180 (876)
T ss_pred cChhHHHHH-hcCCEEEEec
Confidence 1111 35 6788888633
No 345
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=28.16 E-value=2e+02 Score=29.30 Aligned_cols=88 Identities=14% Similarity=0.274 Sum_probs=53.4
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhCC-CCCeeeccCC-CCHHHHHHHHHHHhc-cCCeEEEec-----cccc-CCCcCCCC
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGR-MKQDRRMAIYAQFCE-KRSVLFCTD-----VASR-GLDFNKAV 202 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~~-gi~v~~lHg~-m~~~~R~~i~~~F~~-~~~VLVaTd-----v~ar-GLD~pp~V 202 (564)
..+||.|.+--.|-.++..|+.... +..|+-|-+. +.-.+.... .+. ...|.|+|+ ++.. .|.+ ..+
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~---L~~~~~~i~vGTP~Rl~kLle~~~L~l-~~l 202 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKL---LKKTRVHIAVGTPGRLSKLLENGALSL-SNL 202 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHH---HHhCCceEEEeChHHHHHHHHcCCCCc-ccC
Confidence 4688888888888888888876531 3455544443 233333333 344 788999998 2333 3666 566
Q ss_pred cEEEE------------cCCCCCHhhHHHHhcc
Q 008461 203 DWVVQ------------VDCPEDVASYIHRVGR 223 (564)
Q Consensus 203 ~~VI~------------~d~P~s~~~YiqRiGR 223 (564)
.+||. +|+|.....+++-.++
T Consensus 203 ~~ivlD~s~~D~K~~~i~d~~e~~~~l~~lL~~ 235 (252)
T PF14617_consen 203 KRIVLDWSYLDQKKRSIFDIPETREDLWKLLYK 235 (252)
T ss_pred eEEEEcCCccccccccccccHHHHHHHHHHHhh
Confidence 66664 4566666666555444
No 346
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.94 E-value=98 Score=35.74 Aligned_cols=43 Identities=16% Similarity=0.385 Sum_probs=25.5
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCCh
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK 76 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~ 76 (564)
...+++||||+|+|....|. .+..+++.-|....++|.+ |-+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T-td~~ 165 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT-TDPQ 165 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE-CCch
Confidence 46789999999998765433 3444444444444444443 4433
No 347
>PRK08116 hypothetical protein; Validated
Probab=27.50 E-value=1.5e+02 Score=30.34 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=41.4
Q ss_pred CCcEEEEcHHHHHHHHhcCC----------CC-CCCCcceEEEeccC--ccCcccHHHHHHHHHHhC-CCCCcEEEEecc
Q 008461 8 ELNILVCTPGRLLQHMDETP----------NF-DCSQLQILILDEAD--RILDVGFKKALNAIVSQL-PKHRQTFLFSAT 73 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~----------~~-~~~~L~~lVlDEAD--~lld~gf~~~l~~Il~~l-p~~~Q~llfSAT 73 (564)
+..+++.|...|+..+.... .+ .+.+.++||||+.+ ...++. ...+..|+... ....++|+.|..
T Consensus 142 ~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~~~-~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 142 GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTEWA-REKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCHHH-HHHHHHHHHHHHHCCCCEEEECCC
Confidence 45667777666666653210 00 15678999999995 344443 45566676654 334567776665
Q ss_pred CChhH
Q 008461 74 QTKSV 78 (564)
Q Consensus 74 l~~~v 78 (564)
.+..+
T Consensus 221 ~~~eL 225 (268)
T PRK08116 221 SLEEL 225 (268)
T ss_pred CHHHH
Confidence 55443
No 348
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=27.37 E-value=88 Score=31.98 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=26.4
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
..++|||||+|.+... ....+..++...+....+++.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4579999999988653 3456666777766666666654
No 349
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=27.33 E-value=1.8e+02 Score=28.34 Aligned_cols=44 Identities=18% Similarity=0.353 Sum_probs=27.6
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCc-EEEEeccCCh
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ-TFLFSATQTK 76 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q-~llfSATl~~ 76 (564)
.+.++|||||+|.+... -...+..++..+..... +++++++.++
T Consensus 89 ~~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 89 PEAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred ccCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 34578999999987543 34455556655443333 5777777543
No 350
>PRK04841 transcriptional regulator MalT; Provisional
Probab=27.31 E-value=77 Score=37.71 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=35.6
Q ss_pred ceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCCh
Q 008461 35 QILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK 76 (564)
Q Consensus 35 ~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~ 76 (564)
-+||||.+|.+-+......+..++.++|.+..+|+.|-+.|+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 479999999987666777899999999999999898877654
No 351
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=27.07 E-value=61 Score=32.99 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhh
Q 008461 117 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKL 154 (564)
Q Consensus 117 ~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l 154 (564)
.++.....+|.......-|+|++|+.........+...
T Consensus 56 ~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~ 93 (249)
T PTZ00254 56 EKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQY 93 (249)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 34555555665544455578999998888777777653
No 352
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=27.05 E-value=81 Score=37.45 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=39.0
Q ss_pred cceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCCh
Q 008461 34 LQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK 76 (564)
Q Consensus 34 L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~ 76 (564)
.-++|||..|++.+......++.++++.|.+.+.++.|=+.|.
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 3589999999999999999999999999999999999888664
No 353
>PRK10869 recombination and repair protein; Provisional
Probab=26.63 E-value=86 Score=35.65 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=33.0
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEec
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 72 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSA 72 (564)
.+..++||||.+.-++......+..++..+....|+++.|-
T Consensus 451 ~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH 491 (553)
T PRK10869 451 METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTH 491 (553)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 35689999999999988888888888888876677666554
No 354
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.57 E-value=82 Score=36.71 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=26.3
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
...+++||||||+|.... .+.+..+++..|....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 456899999999877654 345666666666555555543
No 355
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.41 E-value=1.2e+02 Score=34.07 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=24.0
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEE
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llf 70 (564)
...+++||||+|.|....| +.+...++.-|+...+++.
T Consensus 115 ~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILA 152 (491)
T ss_pred CCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEE
Confidence 5778999999998866433 3444455554544444443
No 356
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.32 E-value=88 Score=35.58 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=27.1
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
...+++||||||+|.... .+.+..+++..|....+++.+
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 567899999999976643 455666666666565566554
No 357
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=26.22 E-value=1.5e+02 Score=30.56 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=12.9
Q ss_pred HHHHHhcHHhHHHHHHHHHHHHHHHHHH
Q 008461 456 EELKRADKEDKLLDRQRRREKRIKQKMK 483 (564)
Q Consensus 456 ~~~~~~d~~dk~~~~~~~~~~~~~~~~~ 483 (564)
+..+.....+++..++..++|+.++..+
T Consensus 86 qlak~~~~k~q~k~~e~~~eKe~K~~kk 113 (331)
T KOG2894|consen 86 QLAKKKLSKTQQKKRELAREKEEKKEKK 113 (331)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444455555554444433
No 358
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=25.95 E-value=98 Score=31.99 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=26.9
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
....+|||||+|.+.. .....+..++...+...++++.+
T Consensus 124 ~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEEEe
Confidence 3457999999998754 34556777777776666655543
No 359
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.93 E-value=1.2e+02 Score=34.74 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=25.8
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
...+++||||+|+|.... .+.|..+++.-|....+|+.+
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 567899999999876543 455666666655554555444
No 360
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=25.91 E-value=74 Score=30.50 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=36.9
Q ss_pred CCCcceEEEeccCccCcccH--HHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 31 CSQLQILILDEADRILDVGF--KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 31 ~~~L~~lVlDEAD~lld~gf--~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
-...++|||||+=..++.|+ ...+..++...|...-+|+.--..|+.+.+.+.+
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SE
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCe
Confidence 35789999999988777775 4677888888888888888877888888777754
No 361
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=25.90 E-value=72 Score=34.27 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=27.1
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEecc
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 73 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSAT 73 (564)
....++||||||+|-. .-.+.+..+++.-|....++++|..
T Consensus 140 ~~~kVviIDead~m~~-~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 140 GGWRVVIVDTADEMNA-NAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred CCCEEEEEechHhcCH-HHHHHHHHHHhcCCCCeEEEEEECC
Confidence 5678999999998743 3455666666665555555555444
No 362
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=25.82 E-value=81 Score=36.62 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=24.8
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEE
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llf 70 (564)
...+++||||||+|.... .+.+..+++.-|....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 467899999999887654 34444466655544445554
No 363
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=25.72 E-value=44 Score=39.34 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=43.3
Q ss_pred CcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccC-ChhHHHHHHH
Q 008461 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQ-TKSVQDLARL 84 (564)
Q Consensus 9 ~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl-~~~v~~l~~~ 84 (564)
.+|+++|.+.|...+.....+.-....++|+||||++-... .....++. .+.... .+++|.|+ .+.+..+..+
T Consensus 448 ~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~~~~l~-~~~~~~-~~~LtgTPlen~l~eL~sl 521 (866)
T COG0553 448 FDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSEGKALQ-FLKALN-RLDLTGTPLENRLGELWSL 521 (866)
T ss_pred eeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHHHHHHH-HHhhcc-eeeCCCChHhhhHHHHHHH
Confidence 78999999998774322223444577899999999965443 22222222 333222 37778885 4444444443
No 364
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=25.52 E-value=95 Score=29.36 Aligned_cols=38 Identities=24% Similarity=0.462 Sum_probs=31.2
Q ss_pred ceEEEeccCccCcccHHHHHHHHHHhCCC-CCcEEEEec
Q 008461 35 QILILDEADRILDVGFKKALNAIVSQLPK-HRQTFLFSA 72 (564)
Q Consensus 35 ~~lVlDEAD~lld~gf~~~l~~Il~~lp~-~~Q~llfSA 72 (564)
.+++|||.+.-+.......+-.++..+.+ +.|+++.|-
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTH 297 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTH 297 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCc
Confidence 78999999998888888877788877765 789987654
No 365
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=25.42 E-value=94 Score=36.26 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=38.1
Q ss_pred ccccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCCh
Q 008461 3 KEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK 76 (564)
Q Consensus 3 k~r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~ 76 (564)
..-+.+++|+++||+.|-. . .+-.-..-.+|+||||.+-...-. ...-+..+...++. ++|+|...
T Consensus 229 ~~el~~~dVVltTy~il~~----~-~l~~i~w~Riildea~~ikn~~tq--~~~a~~~L~a~~RW-cLtgtPiq 294 (674)
T KOG1001|consen 229 KSELNSYDVVLTTYDILKN----S-PLVKIKWLRIVLDEAHTIKNKDTQ--IFKAVCQLDAKYRW-CLTGTPIQ 294 (674)
T ss_pred cchhcCCceEEeeHHHhhc----c-cccceeEEEEEeccccccCCcchH--hhhhheeeccceee-eecCChhh
Confidence 3445688999999998742 2 222233457899999998776433 22222223323333 45666443
No 366
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=25.28 E-value=1.1e+02 Score=27.90 Aligned_cols=49 Identities=10% Similarity=0.033 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCC---hHHHHHHHHHHHhhCCCC-CeeeccCCCC
Q 008461 118 KLDMLWSFIKAHLNSKILVFLTS---CKQVKYVFEAFKKLRPGI-PLMCLYGRMK 168 (564)
Q Consensus 118 Kl~~L~~~L~~~~~~k~IVF~~t---~k~v~~l~e~L~~l~~gi-~v~~lHg~m~ 168 (564)
.+..++.-+.-....++||||.+ ...+-.++-.|+.+ |+ .+.+|.|++.
T Consensus 82 ~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~--G~~~v~ildGG~~ 134 (138)
T cd01445 82 EFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLC--GHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHc--CCCCeEEeCCCHH
Confidence 33444333333346799999976 44444555566654 54 4788998865
No 367
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.00 E-value=81 Score=37.99 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=27.1
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCCh
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK 76 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~ 76 (564)
...+++||||||+|... -.+.|..+++.-|....+|+. .|-+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa-TTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA-TTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE-CCCch
Confidence 45689999999998543 345555566655555555554 44433
No 368
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=24.71 E-value=1.1e+02 Score=35.75 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=26.2
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
...+++||||+|.|.... .+.+..+++..|....+||.+
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 467899999999876533 345556666656566666554
No 369
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.61 E-value=1.4e+02 Score=32.39 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=23.0
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEecc
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 73 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSAT 73 (564)
..-+++||||||+|.... .+.+...++..|+...++ |.+|
T Consensus 126 ~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t~~I-l~t~ 165 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHAIFI-FATT 165 (397)
T ss_pred CCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCeEEE-EEeC
Confidence 567899999999987543 233334444444333333 4334
No 370
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=24.45 E-value=1.4e+02 Score=29.83 Aligned_cols=53 Identities=25% Similarity=0.427 Sum_probs=43.0
Q ss_pred CCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHH
Q 008461 31 CSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLAR 83 (564)
Q Consensus 31 ~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~ 83 (564)
+.+-+++||||.-.=+|.-....+..++.++...-..++||.-.=.++..++.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCD 201 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCD 201 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhh
Confidence 45678899999998888888889999999998878888888876666665554
No 371
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=23.99 E-value=1.6e+02 Score=32.85 Aligned_cols=87 Identities=18% Similarity=0.265 Sum_probs=55.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhh---CCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecccccCCCc---C-----
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKL---RPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDF---N----- 199 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l---~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~arGLD~---p----- 199 (564)
+-.+||.|+|+.-+-..+..++.+ .+++.+..+-||-... .-.++....+++||||+ +|=+|- +
T Consensus 154 ~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~---~e~~kl~k~~niliATP--GRLlDHlqNt~~f~~ 228 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFS---VEADKLVKGCNILIATP--GRLLDHLQNTSGFLF 228 (543)
T ss_pred CeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccch---HHHHHhhccccEEEeCC--chHHhHhhcCCcchh
Confidence 557999999999888887766654 3567777777775432 22233333789999998 232221 0
Q ss_pred --------CCCcEEEEcCCCCCHhhHHHHhc
Q 008461 200 --------KAVDWVVQVDCPEDVASYIHRVG 222 (564)
Q Consensus 200 --------p~V~~VI~~d~P~s~~~YiqRiG 222 (564)
...|.+...+++.++...+-.++
T Consensus 229 r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp 259 (543)
T KOG0342|consen 229 RNLKCLVLDEADRLLDIGFEEDVEQIIKILP 259 (543)
T ss_pred hccceeEeecchhhhhcccHHHHHHHHHhcc
Confidence 12344444566777777776666
No 372
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.90 E-value=1.3e+02 Score=33.56 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=19.3
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCC
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLP 62 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp 62 (564)
..-.++||||||.|....+ +.+...+...|
T Consensus 118 ~~~KVvIIDEad~Lt~~a~-naLLk~LEepp 147 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAF-NALLKTLEEPP 147 (486)
T ss_pred CCeeEEEEEChhhcCHHHH-HHHHHHHhcCC
Confidence 5678999999998765433 33444444444
No 373
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=23.77 E-value=85 Score=36.95 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=28.5
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEecc
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 73 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSAT 73 (564)
..++||+|||+++-. ..+..++..+|...+++++.-+
T Consensus 416 ~~~llIvDEaSMvd~----~~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 416 DCDLLIVDESSMMDT----WLALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred cCCEEEEeccccCCH----HHHHHHHHhCCCCCEEEEECcc
Confidence 568999999997643 3567778888888888887544
No 374
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=23.69 E-value=2.6e+02 Score=33.66 Aligned_cols=125 Identities=14% Similarity=0.192 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCCcEEEEeCChH----HHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec-c--
Q 008461 120 DMLWSFIKAHLNSKILVFLTSCK----QVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-V-- 191 (564)
Q Consensus 120 ~~L~~~L~~~~~~k~IVF~~t~k----~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd-v-- 191 (564)
..|..+++. ...+.|++.+|.. |++.+.+.......++.+..++|+.++.+|. .+.. ...|||+|. +
T Consensus 105 PIld~~l~~-~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNpdMLh 179 (851)
T COG1205 105 PILDHLLRD-PSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNPDMLH 179 (851)
T ss_pred HHHHHHhhC-cCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCHHHHH
Confidence 444445443 3568899999965 5566666666542268899999999999887 3444 888999876 2
Q ss_pred --cccCCCc----CCCCcEEEEcCC-------CCCHhhHHHHhcccccCCCCceEEEEeCc---chHHHHHHHH
Q 008461 192 --ASRGLDF----NKAVDWVVQVDC-------PEDVASYIHRVGRTARYNSGGRSVLFLTP---TEMKMLEKLR 249 (564)
Q Consensus 192 --~arGLD~----pp~V~~VI~~d~-------P~s~~~YiqRiGRtgR~g~~G~~il~l~~---~e~~~l~~L~ 249 (564)
+-|..+- ...+.+||.=.+ -.++.-.+-|..|-.|.+.....+++.+. +..++...+.
T Consensus 180 ~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~ 253 (851)
T COG1205 180 YLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELF 253 (851)
T ss_pred HHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhc
Confidence 2233322 023555554322 24677777777776665544444444432 3333444443
No 375
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=23.69 E-value=1e+02 Score=29.44 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=31.3
Q ss_pred EcHHHHHHHHhcCCCCCCCCcceEEEeccCccC-c----ccHHHHHHHHHHhCCCC-CcEEEEeccC
Q 008461 14 CTPGRLLQHMDETPNFDCSQLQILILDEADRIL-D----VGFKKALNAIVSQLPKH-RQTFLFSATQ 74 (564)
Q Consensus 14 ~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~ll-d----~gf~~~l~~Il~~lp~~-~Q~llfSATl 74 (564)
.+...++..+..... . -+|||||+|.+. . ..+...+..++..+... ...++++++-
T Consensus 104 ~~l~~~~~~l~~~~~----~-~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 104 SALERLLEKLKKKGK----K-VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp --HHHHHHHHHHCHC----C-EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHHhcCC----c-EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 344455555554311 1 589999999988 1 34666777777774433 3445566664
No 376
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=23.60 E-value=68 Score=28.59 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=28.5
Q ss_pred CCcceEEEeccCccCccc----------HHHHHHHHHHhCCCCCcEEEEeccCCh
Q 008461 32 SQLQILILDEADRILDVG----------FKKALNAIVSQLPKHRQTFLFSATQTK 76 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~g----------f~~~l~~Il~~lp~~~Q~llfSATl~~ 76 (564)
....++||||++.+.+.. ....+..+...+.....++++....+.
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 456799999999875442 235566666666554555555555443
No 377
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=23.31 E-value=2.7e+02 Score=24.56 Aligned_cols=75 Identities=9% Similarity=0.074 Sum_probs=45.2
Q ss_pred CcEEEEcHHHHHHHHhcCCCCCCCCc-ceEEEeccCc-cCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 9 LNILVCTPGRLLQHMDETPNFDCSQL-QILILDEADR-ILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 9 ~~ILV~TPgrLl~~L~~~~~~~~~~L-~~lVlDEAD~-lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
..|+|+|-|.+.+-+.+...+-+... ++-+++ +.. .....|...+..++..++..-++++|+-=+.-.....+..
T Consensus 2 ~~ili~sHG~~A~gl~~s~~~i~G~~~~i~~i~-~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~ 78 (116)
T TIGR00824 2 IAIIISGHGQAAIALLKSAEMIFGEQNNVGAVP-FVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAAR 78 (116)
T ss_pred cEEEEEecHHHHHHHHHHHHHHcCCcCCeEEEE-cCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHH
Confidence 36999999999877765422211111 133333 211 1112378888899999987888998876555555544443
No 378
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=23.19 E-value=63 Score=34.20 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=28.2
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
.++++|+||||.|--. -++.++..+..+..+..+.+.+
T Consensus 131 ~fKlvILDEADaMT~~-AQnALRRviek~t~n~rF~ii~ 168 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD-AQNALRRVIEKYTANTRFATIS 168 (360)
T ss_pred ceeEEEecchhHhhHH-HHHHHHHHHHHhccceEEEEec
Confidence 6899999999976543 4778888888887666665433
No 379
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=23.07 E-value=2e+02 Score=26.40 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=30.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCCH
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 169 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~~ 169 (564)
..++||+|.+...+..++..|... |+ .+..+.||+..
T Consensus 49 ~~~vVv~c~~g~~a~~aa~~L~~~--G~~~v~~L~GG~~a 86 (145)
T cd01535 49 AERYVLTCGSSLLARFAAADLAAL--TVKPVFVLEGGTAA 86 (145)
T ss_pred CCCEEEEeCCChHHHHHHHHHHHc--CCcCeEEecCcHHH
Confidence 578999999998888888888875 44 79999999653
No 380
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=22.99 E-value=67 Score=35.33 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=39.7
Q ss_pred CCcEEEEcHHHHHHHHhc----CC--CC--CCCCcceEEEeccCccCccc-HHHHHHHHHHhCC-CCCcEEEEeccCChh
Q 008461 8 ELNILVCTPGRLLQHMDE----TP--NF--DCSQLQILILDEADRILDVG-FKKALNAIVSQLP-KHRQTFLFSATQTKS 77 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~----~~--~~--~~~~L~~lVlDEAD~lld~g-f~~~l~~Il~~lp-~~~Q~llfSATl~~~ 77 (564)
+..++..|...+...+.. .. .+ .+.+.++|||||+|.+.... ....+..++..+. ...++++.|.+.|..
T Consensus 178 ~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~ 257 (450)
T PRK00149 178 NAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKE 257 (450)
T ss_pred CCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHH
Confidence 456777777766543321 10 00 13467899999999876432 2344555555443 245665555554444
Q ss_pred HH
Q 008461 78 VQ 79 (564)
Q Consensus 78 v~ 79 (564)
+.
T Consensus 258 l~ 259 (450)
T PRK00149 258 LP 259 (450)
T ss_pred HH
Confidence 33
No 381
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=22.88 E-value=3.3e+02 Score=33.00 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc
Q 008461 119 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA 192 (564)
Q Consensus 119 l~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~ 192 (564)
..+|..++....+..+-|.++|.--|+.-++.+..++ -|+.+.++.+++++.+|..++. +.|+++|...
T Consensus 111 vA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~-----~dI~YGT~~e 181 (913)
T PRK13103 111 VGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA-----ADITYGTNNE 181 (913)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc-----CCEEEEcccc
Confidence 4555666666778899999999766666666665543 3889999999999999987766 6788888754
No 382
>PRK05320 rhodanese superfamily protein; Provisional
Probab=22.76 E-value=1.3e+02 Score=30.54 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=32.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCCC-eeeccCCCCHH
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQD 170 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~-v~~lHg~m~~~ 170 (564)
..+++++||.+-..+......|... |+. +..+.||+..-
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~--Gf~~V~~L~GGi~~w 213 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEV--GIDNVYQLEGGILKY 213 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHc--CCcceEEeccCHHHH
Confidence 4688999999999999999999875 774 88999998653
No 383
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=22.68 E-value=1.1e+02 Score=34.92 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=49.9
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhcCCCCcccccccccccCCccceeEEEE
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMI 112 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~ 112 (564)
+..++||||.+.-++......+..++..+...+|++++|-- .. ++. ..+..+ .+.... ......-.+..
T Consensus 462 ~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~--~~---~~~--~ad~~~-~l~k~~---~~~~t~s~i~~ 530 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHL--PQ---VAA--HADAHF-KVEKEG---LDGRTATRVRP 530 (563)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEECh--HH---HHH--hcCeEE-EEEEcc---CCCcEEEEEEE
Confidence 46899999999988888888888888877667777776554 11 222 222222 222111 11112223334
Q ss_pred cCcccHHHHHHHHHH
Q 008461 113 VPLEQKLDMLWSFIK 127 (564)
Q Consensus 113 ~~~~~Kl~~L~~~L~ 127 (564)
.+.+.++..+...|.
T Consensus 531 L~~~~r~~EiArml~ 545 (563)
T TIGR00634 531 LSGEERVAELARMLA 545 (563)
T ss_pred CCccHHHHHHHHHhC
Confidence 566777777777763
No 384
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=22.59 E-value=1.2e+02 Score=28.89 Aligned_cols=42 Identities=19% Similarity=0.353 Sum_probs=30.5
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCC-CCcEEEEecc
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPK-HRQTFLFSAT 73 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~-~~Q~llfSAT 73 (564)
.+-+++++||...-+|......+..++..+.. ..++++.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 56689999999999998877777666665533 3666666543
No 385
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=22.41 E-value=95 Score=36.72 Aligned_cols=51 Identities=22% Similarity=0.390 Sum_probs=34.4
Q ss_pred ceEEEeccCccCc---cc------HHHHHHHHHHhCCCCCcEEEEeccC---ChhHHHHHHHhc
Q 008461 35 QILILDEADRILD---VG------FKKALNAIVSQLPKHRQTFLFSATQ---TKSVQDLARLSL 86 (564)
Q Consensus 35 ~~lVlDEAD~lld---~g------f~~~l~~Il~~lp~~~Q~llfSATl---~~~v~~l~~~~l 86 (564)
.+|||||+|+--. ++ -+..+..+-..|| +.+++..|||= |.++.-+.++.+
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGAsEPrNMaYM~RLGl 469 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGASEPRNMAYMVRLGL 469 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCCCCcchhhhhhhhcc
Confidence 5899999996432 11 3456777777787 78899999983 444444555544
No 386
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=22.33 E-value=1.7e+02 Score=35.59 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=39.9
Q ss_pred CCcEEEEcHHHHHHHHh-c---------CCCCC---CCCc-ceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEecc
Q 008461 8 ELNILVCTPGRLLQHMD-E---------TPNFD---CSQL-QILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 73 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~-~---------~~~~~---~~~L-~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSAT 73 (564)
.++|+|.|-+.|..-.. + +.... +... -+||+||+|++-.. ...+.+| ..+.+.. ++.||||
T Consensus 162 ~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~--~k~~~~i-~~lnpl~-~lrysAT 237 (986)
T PRK15483 162 TIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD--NKFYQAI-EALKPQM-IIRFGAT 237 (986)
T ss_pred ceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--hHHHHHH-HhcCccc-EEEEeee
Confidence 58999999998854211 0 00011 1222 47899999998553 3355666 4443222 6779999
Q ss_pred CCh
Q 008461 74 QTK 76 (564)
Q Consensus 74 l~~ 76 (564)
.+.
T Consensus 238 ~~~ 240 (986)
T PRK15483 238 FPD 240 (986)
T ss_pred cCC
Confidence 987
No 387
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=22.24 E-value=80 Score=36.72 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=30.5
Q ss_pred CCCCCcceEEEeccCccCcccHHHHHHHHHHhC-CCCCcEEEEeccCCh
Q 008461 29 FDCSQLQILILDEADRILDVGFKKALNAIVSQL-PKHRQTFLFSATQTK 76 (564)
Q Consensus 29 ~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l-p~~~Q~llfSATl~~ 76 (564)
..=.+++++|+|||+.+-+. .+..|+-.+ ..+.+++++|.|-+.
T Consensus 348 iRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 348 IRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred ccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCCC
Confidence 33457899999999987764 444444333 237899999988543
No 388
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=22.17 E-value=1.3e+02 Score=33.05 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=47.8
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc---cCCeEEEec
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTD 190 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~---~~~VLVaTd 190 (564)
+=+|||.+-......-...|..+ .+++..|++.|+..+|.+++-.+.. ..++|.-|+
T Consensus 62 gITIV~SPLiALIkDQiDHL~~L--KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITP 121 (641)
T KOG0352|consen 62 GITIVISPLIALIKDQIDHLKRL--KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITP 121 (641)
T ss_pred CeEEEehHHHHHHHHHHHHHHhc--CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEch
Confidence 47899999888777777777776 7899999999999999999999987 456777776
No 389
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=22.17 E-value=2.8e+02 Score=28.39 Aligned_cols=113 Identities=13% Similarity=0.205 Sum_probs=60.1
Q ss_pred eccCccCcccHH--HHHHHHHHhCCCCCcEEEEecc---CChhHHHHHHHhcCCCCcccccccccccCCccceeEEEEcC
Q 008461 40 DEADRILDVGFK--KALNAIVSQLPKHRQTFLFSAT---QTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP 114 (564)
Q Consensus 40 DEAD~lld~gf~--~~l~~Il~~lp~~~Q~llfSAT---l~~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~ 114 (564)
=..+++++.|-+ .--..+...+.+.-+++.+-.- +-....++....+.+...+....-.....+..+...++..+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp 172 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDLP 172 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcCC
Confidence 345555555422 2233333345544555443221 11112223333445543333332222233445555566666
Q ss_pred ccc-HHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhh
Q 008461 115 LEQ-KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKL 154 (564)
Q Consensus 115 ~~~-Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l 154 (564)
..+ -++.+.+.|+. +..+++|++|..|++.+++.|+..
T Consensus 173 ~PW~~le~~~~~Lkp--gg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 173 DPWNVLEHVSDALKP--GGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred ChHHHHHHHHHHhCC--CcEEEEEcCCHHHHHHHHHHHHhc
Confidence 543 44555555544 589999999999999999999874
No 390
>PRK10536 hypothetical protein; Provisional
Probab=22.11 E-value=1e+02 Score=31.57 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=26.9
Q ss_pred ceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 35 QILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 35 ~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
.+||||||+.+- ...+..++..++.+.++++..
T Consensus 178 ~~vIvDEaqn~~----~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 178 AVVILDEAQNVT----AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred CEEEEechhcCC----HHHHHHHHhhcCCCCEEEEeC
Confidence 799999999764 368888999999888877753
No 391
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=22.05 E-value=1e+02 Score=30.39 Aligned_cols=72 Identities=11% Similarity=0.202 Sum_probs=45.6
Q ss_pred CCCcEEEEcHHHHHHHHhcC---CCC-----CCCCcceEEEeccCccCccc-HHHHHHHHHHhCC-CCCcEEEEeccCCh
Q 008461 7 NELNILVCTPGRLLQHMDET---PNF-----DCSQLQILILDEADRILDVG-FKKALNAIVSQLP-KHRQTFLFSATQTK 76 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~---~~~-----~~~~L~~lVlDEAD~lld~g-f~~~l~~Il~~lp-~~~Q~llfSATl~~ 76 (564)
.+..|+..|...+...+... ... .+.+.++||||.+|.+.... ....+..++..+. .+.|+|+.|...|.
T Consensus 63 ~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 63 PGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPS 142 (219)
T ss_dssp TTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TT
T ss_pred ccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCc
Confidence 35678888888876554321 010 14678999999999987643 4556666666653 35677777777766
Q ss_pred hH
Q 008461 77 SV 78 (564)
Q Consensus 77 ~v 78 (564)
.+
T Consensus 143 ~l 144 (219)
T PF00308_consen 143 EL 144 (219)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 392
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=21.80 E-value=70 Score=34.58 Aligned_cols=70 Identities=11% Similarity=0.234 Sum_probs=37.9
Q ss_pred CCcEEEEcHHHHHHHHh----cCC--CC--CCCCcceEEEeccCccCccc-HHHHHHHHHHhCC-CCCcEEEEeccCChh
Q 008461 8 ELNILVCTPGRLLQHMD----ETP--NF--DCSQLQILILDEADRILDVG-FKKALNAIVSQLP-KHRQTFLFSATQTKS 77 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~----~~~--~~--~~~~L~~lVlDEAD~lld~g-f~~~l~~Il~~lp-~~~Q~llfSATl~~~ 77 (564)
+..++..|...+...+. ... .+ .+.+.++|||||+|.+.... ....+..++..+. .+.++++.|...|..
T Consensus 166 ~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~ 245 (405)
T TIGR00362 166 NAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKE 245 (405)
T ss_pred CCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHH
Confidence 45677777766543321 110 00 13457899999999876542 2344555554442 345665544444443
No 393
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=21.77 E-value=1.1e+02 Score=37.00 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=45.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 190 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd 190 (564)
.+|.+|.+++..-+.+..+ |..+.|.+....+-| ++..|.....+.+. +..||++|-
T Consensus 444 ~GP~LvivPlstL~NW~~E-f~kWaPSv~~i~YkG--tp~~R~~l~~qir~gKFnVLlTty 501 (1157)
T KOG0386|consen 444 QGPFLIIVPLSTLVNWSSE-FPKWAPSVQKIQYKG--TPQQRSGLTKQQRHGKFNVLLTTY 501 (1157)
T ss_pred CCCeEEeccccccCCchhh-ccccccceeeeeeeC--CHHHHhhHHHHHhcccceeeeeeH
Confidence 6899999998877766654 556667766666555 78899999999999 999999996
No 394
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=21.64 E-value=1.7e+02 Score=25.31 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=27.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 168 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~ 168 (564)
..++||||++...+...+..|... |+....+.||+.
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~--G~~~v~~~GG~~ 95 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEM--GYTHAENAGGLK 95 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHc--CCCeEEecCCHH
Confidence 467999999988888888888775 766545568765
No 395
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=21.60 E-value=1.2e+02 Score=25.42 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=26.4
Q ss_pred CCcEEEEeCChHHHHHHHHH-----HHhhCCCC-CeeeccCCCCH
Q 008461 131 NSKILVFLTSCKQVKYVFEA-----FKKLRPGI-PLMCLYGRMKQ 169 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~-----L~~l~~gi-~v~~lHg~m~~ 169 (564)
...+||||.+.......... |..+ |+ .+..|.||+..
T Consensus 67 ~~~iv~yc~~~~~~~~~~~~~~~~~l~~~--g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 67 DKDIVFYCSSGWRSGSAAAARVAWILKKL--GFKNVYILDGGFEA 109 (113)
T ss_dssp TSEEEEEESSSCHHHHHHHHHHHHHHHHT--TTSSEEEETTHHHH
T ss_pred cccceeeeecccccchhHHHHHHHHHHHc--CCCCEEEecChHHH
Confidence 56788999766666555555 6664 65 89999998754
No 396
>PLN02160 thiosulfate sulfurtransferase
Probab=21.55 E-value=1.3e+02 Score=27.38 Aligned_cols=38 Identities=16% Similarity=-0.030 Sum_probs=31.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCCH
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 169 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~~ 169 (564)
...++||||.+...+...+..|... |+ .+..+.|++..
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~--G~~~v~~l~GG~~~ 118 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAA--GYKKVRNKGGGYLA 118 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHc--CCCCeeecCCcHHH
Confidence 3578999999999999999999875 66 47788898764
No 397
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=21.54 E-value=3.3e+02 Score=26.93 Aligned_cols=37 Identities=8% Similarity=0.230 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhh
Q 008461 117 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKL 154 (564)
Q Consensus 117 ~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l 154 (564)
.++...+.++... .++-|+|++|+.++..+...+...
T Consensus 53 ~~L~~A~~~i~~~-~~~~ILfVgTk~~~~~~v~k~A~~ 89 (204)
T PRK04020 53 ERIRIAAKFLSRY-EPEKILVVSSRQYGQKPVQKFAEV 89 (204)
T ss_pred HHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 3445555666664 567899999999888777777653
No 398
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=21.50 E-value=78 Score=32.38 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=26.8
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEec
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 72 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSA 72 (564)
...+++||||||.|.. +-.+.+..+++--|.+..+++.+.
T Consensus 108 ~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEcC
Confidence 6789999999998765 235555555555555555555543
No 399
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=21.39 E-value=1.4e+02 Score=30.06 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=24.4
Q ss_pred ceEEEeccCccCccc---H-HHHHHHHHHhCCCC-CcEEEEeccCChhH
Q 008461 35 QILILDEADRILDVG---F-KKALNAIVSQLPKH-RQTFLFSATQTKSV 78 (564)
Q Consensus 35 ~~lVlDEAD~lld~g---f-~~~l~~Il~~lp~~-~Q~llfSATl~~~v 78 (564)
.+|+|||||.|...+ | ...+..++..+... ..++++-|+.+..+
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~ 155 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEM 155 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchh
Confidence 589999999987422 2 24556666655432 22333334444443
No 400
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=21.38 E-value=2.5e+02 Score=28.37 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCC
Q 008461 18 RLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 75 (564)
Q Consensus 18 rLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~ 75 (564)
.|.+.+...+.| ..-+++|++++|.+........+..++...|++..+++++..+.
T Consensus 33 ~l~~~~~~~slf--~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~ 88 (302)
T TIGR01128 33 QLLEEAQTLPLF--SERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLD 88 (302)
T ss_pred HHHHHhhccCcc--cCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCC
Confidence 566666666555 45588999999987643345566677777666666666554333
No 401
>PRK04195 replication factor C large subunit; Provisional
Probab=21.29 E-value=1.7e+02 Score=32.62 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=21.4
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHhCCC-CCcEEEEe
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQLPK-HRQTFLFS 71 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~-~~Q~llfS 71 (564)
.-.+|||||||.|....-...+..++..+.. ...+|+++
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~ 137 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTA 137 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEec
Confidence 5679999999998653222233333333322 34455543
No 402
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=21.29 E-value=1.6e+02 Score=28.80 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=40.3
Q ss_pred CCcceEEEeccCccCcccH--HHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHh
Q 008461 32 SQLQILILDEADRILDVGF--KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf--~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
...++|||||.--.+..|+ ...+..++..-|....+|+..-..|+.+.+++.+.
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 4689999999997777764 35677778877766666666656888888877653
No 403
>PRK11054 helD DNA helicase IV; Provisional
Probab=21.21 E-value=1.4e+03 Score=26.88 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=43.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhh-CCCCCeeeccCCCCHHHHHHHHHHHhc---cCCeEEEecccccCCCcCCCCcEEE
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKL-RPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTDVASRGLDFNKAVDWVV 206 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l-~~gi~v~~lHg~m~~~~R~~i~~~F~~---~~~VLVaTdv~arGLD~pp~V~~VI 206 (564)
..+.++.+.+ ..++.+.+.+... .++-.+++|.-. ...+..++..... ...|.|.|--++.|+.| ++||
T Consensus 534 ~~p~v~~~~~-~~~~~il~~l~~~~~~~~~I~IL~R~--~~~~~~~l~~~~~~~~~~~i~~~T~h~sKGLEf----D~Vi 606 (684)
T PRK11054 534 DKKAVTLLPE-DQLEALLDKLSGYAKPDERILLLARY--HHLRPALLDKAATRWPKLQIDFMTIHASKGQQA----DYVI 606 (684)
T ss_pred CCceEEEeCC-HHHHHHHHHHHHhhcCCCcEEEEEec--hhhHHHHHHHHHhhcccCCeEEEehhhhcCCcC----CEEE
Confidence 3455555554 4566666666543 234455555432 1122234444443 44799999999999998 6788
Q ss_pred EcCCC
Q 008461 207 QVDCP 211 (564)
Q Consensus 207 ~~d~P 211 (564)
.+++.
T Consensus 607 I~g~~ 611 (684)
T PRK11054 607 ILGLQ 611 (684)
T ss_pred EecCC
Confidence 77654
No 404
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.77 E-value=1.1e+02 Score=34.12 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=25.0
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEec
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 72 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSA 72 (564)
.+..++|+||+|.+-+......+..-.... ++.+++.+|.
T Consensus 122 ~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r-~~pl~~~IST 161 (477)
T PF03354_consen 122 LNPSLAIFDELHAHKDDELYDALESGMGAR-PNPLIIIIST 161 (477)
T ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhhccC-CCceEEEEeC
Confidence 356899999999987754444444444443 3556665543
No 405
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.77 E-value=3e+02 Score=29.44 Aligned_cols=12 Identities=17% Similarity=0.606 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q 008461 474 REKRIKQKMKRK 485 (564)
Q Consensus 474 ~~~~~~~~~~~~ 485 (564)
++.+++++..++
T Consensus 351 ~~~k~~~~~e~~ 362 (405)
T KOG2963|consen 351 KEAKKERKLEKR 362 (405)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 406
>PRK07952 DNA replication protein DnaC; Validated
Probab=20.50 E-value=2.6e+02 Score=28.28 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=43.9
Q ss_pred CCcEEEEcHHHHHHHHhcC---CCC-------CCCCcceEEEeccCccCcccHHH-HHHHHHHhC-CCCCcEEEEeccCC
Q 008461 8 ELNILVCTPGRLLQHMDET---PNF-------DCSQLQILILDEADRILDVGFKK-ALNAIVSQL-PKHRQTFLFSATQT 75 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~---~~~-------~~~~L~~lVlDEAD~lld~gf~~-~l~~Il~~l-p~~~Q~llfSATl~ 75 (564)
+..+++.|...|+..+... ... .+.+.++|||||++......+.. .+..|+..- .....|++.|---+
T Consensus 127 g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~ 206 (244)
T PRK07952 127 GKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNM 206 (244)
T ss_pred CCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCH
Confidence 5677777877777655431 000 14678999999999866544443 566676653 33567777766544
Q ss_pred hhH
Q 008461 76 KSV 78 (564)
Q Consensus 76 ~~v 78 (564)
..+
T Consensus 207 ~~l 209 (244)
T PRK07952 207 EEM 209 (244)
T ss_pred HHH
Confidence 433
No 407
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=20.42 E-value=2.8e+02 Score=31.74 Aligned_cols=123 Identities=11% Similarity=0.166 Sum_probs=67.2
Q ss_pred EEEEcCcccHHHHHHHHHHHcCCCcEEEEeCCh--HHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeE
Q 008461 109 TAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSC--KQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVL 186 (564)
Q Consensus 109 ~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~--k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VL 186 (564)
.|..++-++-++.+...|+...+..+++|++.. ....+++..|-... |.+....++.|+.......+..-- ..-
T Consensus 77 ~~~~ISWDEAl~~IA~kL~~~~~~~~~~y~sg~~snE~~~l~q~f~r~l-Gt~n~~~~s~~C~~~~~~al~~~~---G~~ 152 (574)
T cd02767 77 HYRPISWDEAFAEIAARLRALDPDRAAFYTSGRASNEAAYLYQLFARAY-GTNNLPDCSNMCHEPSSVGLKKSI---GVG 152 (574)
T ss_pred CEEEecHHHHHHHHHHHHhhhCCCcEEEEecCCCccHHHHHHHHHHHHh-CCCCcCCCCCCcchHHHhHHHHhc---CCC
Confidence 577778888889998888877666666666433 33345566554432 544445567777654433322211 111
Q ss_pred EEecccccCCCcCCCCcEEEEcCCC--CCHhhHHHHhcccccCCCCceEEEEeCcchH
Q 008461 187 FCTDVASRGLDFNKAVDWVVQVDCP--EDVASYIHRVGRTARYNSGGRSVLFLTPTEM 242 (564)
Q Consensus 187 VaTdv~arGLD~pp~V~~VI~~d~P--~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~ 242 (564)
..|..+. || ...++||.++.- .+.-...+++-. +| +.|.-|+.+.|...
T Consensus 153 ~~t~~~~---Di-~~ad~Il~~G~Np~~~~p~~~~~l~~-A~--~rGakIIvIdP~~~ 203 (574)
T cd02767 153 KGTVSLE---DF-EHTDLIFFIGQNPGTNHPRMLHYLRE-AK--KRGGKIIVINPLRE 203 (574)
T ss_pred CCCCCHH---HH-hcCCEEEEEcCChhhhcHHHHHHHHH-HH--HCCCEEEEECCCcc
Confidence 1121111 66 678888888752 222234444422 22 34566777788544
No 408
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=20.37 E-value=2.3e+02 Score=25.97 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCC---CcEEEEe--CChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 120 DMLWSFIKAHLN---SKILVFL--TSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 120 ~~L~~~L~~~~~---~k~IVF~--~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
..|..-|..... +.+-+|+ ..|..|..+.+.|+..+|++.+..+|+.
T Consensus 82 ~~ia~~l~~~~~~~~G~i~l~te~~pC~SC~~vi~qF~~~~pni~~~v~~~~ 133 (133)
T PF14424_consen 82 EDIAKKLGDNPDPSGGTIDLFTELPPCESCSNVIEQFKKDFPNIKVNVVYNN 133 (133)
T ss_pred HHHHHHhccccccCCceEEEEecCCcChhHHHHHHHHHHHCCCcEEEEecCC
Confidence 444444433332 6777887 5699999999999999999999998873
No 409
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=20.13 E-value=1.1e+02 Score=29.46 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=24.9
Q ss_pred CCCcceEEEeccCccCcccHHHHHHHHHHhCCC-CCcEEEEecc
Q 008461 31 CSQLQILILDEADRILDVGFKKALNAIVSQLPK-HRQTFLFSAT 73 (564)
Q Consensus 31 ~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~-~~Q~llfSAT 73 (564)
+.+..+||||||-.+. ...+..++...+. ..+++++--+
T Consensus 91 ~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp -TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE-T
T ss_pred CCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEECCc
Confidence 4566899999998754 3467777887776 5667666544
No 410
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=20.03 E-value=1.4e+02 Score=33.90 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=19.1
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCC
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLP 62 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp 62 (564)
..-+++||||+|+|....| +.+..+++.-|
T Consensus 118 ~~~kViIIDE~~~Lt~~a~-naLLKtLEepp 147 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAF-NALLKTLEEPP 147 (559)
T ss_pred CCeEEEEEECcccCCHHHH-HHHHHHhcCCC
Confidence 5678999999998865432 23333444433
No 411
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=20.01 E-value=6.6e+02 Score=25.35 Aligned_cols=55 Identities=5% Similarity=0.173 Sum_probs=39.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCee-eccCCCCHHHHHHHHHHHhc-cCCeE
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLM-CLYGRMKQDRRMAIYAQFCE-KRSVL 186 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~-~lHg~m~~~~R~~i~~~F~~-~~~VL 186 (564)
+.++-++-.+...++.+.+.|+... ++.+. .+||-..+.+...+.+.... +.++|
T Consensus 105 ~~~v~llG~~~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil 161 (243)
T PRK03692 105 GTPVFLVGGKPEVLAQTEAKLRTQW-NVNIVGSQDGYFTPEQRQALFERIHASGAKIV 161 (243)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHh-CCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 4566666677788899999998876 77754 67788877777777777765 55444
No 412
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.01 E-value=2e+02 Score=33.25 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=26.0
Q ss_pred CCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEecc
Q 008461 31 CSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 73 (564)
Q Consensus 31 ~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSAT 73 (564)
...-+++||||||+|.... .+.+..+++..|... +++|.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeC
Confidence 3677899999999986532 445555666555443 3444444
Done!