Query 008461
Match_columns 564
No_of_seqs 424 out of 2656
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i5x_A ATP-dependent RNA helic 100.0 2.3E-41 7.7E-46 374.7 23.0 319 7-332 200-540 (563)
2 2db3_A ATP-dependent RNA helic 100.0 3.3E-40 1.1E-44 355.5 27.9 228 7-241 178-408 (434)
3 3sqw_A ATP-dependent RNA helic 100.0 8.7E-41 3E-45 372.4 23.6 319 7-332 149-489 (579)
4 2j0s_A ATP-dependent RNA helic 100.0 3.2E-38 1.1E-42 334.5 26.5 249 7-261 154-405 (410)
5 1s2m_A Putative ATP-dependent 100.0 7.4E-37 2.5E-41 322.6 29.9 247 7-260 138-386 (400)
6 3eiq_A Eukaryotic initiation f 100.0 1E-37 3.4E-42 330.0 22.3 249 7-261 158-409 (414)
7 2i4i_A ATP-dependent RNA helic 100.0 2E-37 6.8E-42 328.4 24.4 238 7-250 150-393 (417)
8 3fht_A ATP-dependent RNA helic 100.0 7.7E-37 2.6E-41 322.6 28.0 249 7-260 142-401 (412)
9 1xti_A Probable ATP-dependent 100.0 1.8E-36 6.1E-41 318.0 29.9 250 7-261 127-380 (391)
10 3pey_A ATP-dependent RNA helic 100.0 3.2E-36 1.1E-40 315.3 29.6 260 7-274 120-391 (395)
11 3fmp_B ATP-dependent RNA helic 100.0 2.3E-38 7.9E-43 344.1 7.4 247 7-258 209-466 (479)
12 1hv8_A Putative ATP-dependent 100.0 1.1E-35 3.7E-40 308.2 26.9 242 7-259 122-365 (367)
13 1fuu_A Yeast initiation factor 100.0 2E-36 6.8E-41 317.6 8.4 247 8-260 138-387 (394)
14 2z0m_A 337AA long hypothetical 100.0 5.5E-34 1.9E-38 292.4 20.9 229 6-250 103-332 (337)
15 1oyw_A RECQ helicase, ATP-depe 100.0 6.1E-33 2.1E-37 306.1 22.4 233 7-251 114-354 (523)
16 2v1x_A ATP-dependent DNA helic 100.0 7.9E-33 2.7E-37 309.3 23.0 237 6-250 134-384 (591)
17 3fho_A ATP-dependent RNA helic 100.0 9.5E-34 3.3E-38 311.2 15.2 248 7-260 234-492 (508)
18 3oiy_A Reverse gyrase helicase 100.0 9.7E-33 3.3E-37 293.9 18.2 219 8-250 117-373 (414)
19 3l9o_A ATP-dependent RNA helic 100.0 8.3E-31 2.8E-35 310.9 22.3 239 7-251 265-609 (1108)
20 1tf5_A Preprotein translocase 100.0 2.2E-31 7.4E-36 302.0 13.5 232 7-242 171-547 (844)
21 4ddu_A Reverse gyrase; topoiso 100.0 8.7E-31 3E-35 310.6 18.4 223 7-251 173-501 (1104)
22 2xgj_A ATP-dependent RNA helic 100.0 9.3E-29 3.2E-33 291.0 29.7 237 8-251 168-511 (1010)
23 2whx_A Serine protease/ntpase/ 100.0 1.7E-31 5.7E-36 299.9 5.0 287 8-327 254-569 (618)
24 1yks_A Genome polyprotein [con 100.0 2E-32 6.9E-37 295.8 -3.6 285 12-327 71-390 (440)
25 4a2p_A RIG-I, retinoic acid in 100.0 2.7E-29 9.3E-34 275.4 21.1 125 116-243 371-511 (556)
26 1wp9_A ATP-dependent RNA helic 100.0 1.3E-28 4.5E-33 262.3 23.7 231 8-243 101-478 (494)
27 3tbk_A RIG-I helicase domain; 100.0 4.5E-29 1.5E-33 272.9 17.8 129 116-247 370-514 (555)
28 2fsf_A Preprotein translocase 100.0 1.5E-29 5.1E-34 286.4 13.7 129 110-242 418-585 (853)
29 2jlq_A Serine protease subunit 100.0 4E-30 1.4E-34 278.5 8.3 287 7-327 86-402 (451)
30 1gku_B Reverse gyrase, TOP-RG; 100.0 8.5E-30 2.9E-34 301.6 11.7 221 8-251 155-465 (1054)
31 2va8_A SSO2462, SKI2-type heli 100.0 6.5E-28 2.2E-32 274.9 26.7 223 7-242 120-410 (715)
32 2hjv_A ATP-dependent RNA helic 100.0 4.5E-28 1.5E-32 226.7 20.8 154 101-257 5-160 (163)
33 2ykg_A Probable ATP-dependent 100.0 1.1E-28 3.7E-33 279.5 18.1 131 115-248 378-524 (696)
34 2zj8_A DNA helicase, putative 100.0 3.5E-28 1.2E-32 277.5 21.8 231 6-248 112-396 (720)
35 2p6r_A Afuhel308 helicase; pro 100.0 9.6E-28 3.3E-32 273.1 24.9 226 6-243 112-391 (702)
36 4a4z_A Antiviral helicase SKI2 100.0 6.2E-28 2.1E-32 283.9 23.9 237 7-251 122-505 (997)
37 1t5i_A C_terminal domain of A 100.0 7.1E-28 2.4E-32 227.7 18.8 156 102-260 2-160 (172)
38 1nkt_A Preprotein translocase 100.0 3E-28 1E-32 276.3 18.5 233 7-243 199-620 (922)
39 2rb4_A ATP-dependent RNA helic 100.0 1.1E-27 3.7E-32 226.4 19.1 158 101-261 3-169 (175)
40 4a2q_A RIG-I, retinoic acid in 100.0 2.1E-27 7.1E-32 274.1 23.9 125 116-243 612-752 (797)
41 2z83_A Helicase/nucleoside tri 100.0 1.2E-29 4.1E-34 275.4 2.9 281 9-327 90-404 (459)
42 3eaq_A Heat resistant RNA depe 100.0 4.5E-27 1.5E-31 229.7 20.7 155 103-260 3-159 (212)
43 1fuk_A Eukaryotic initiation f 99.9 3.5E-27 1.2E-31 220.9 18.3 155 104-261 2-159 (165)
44 2p6n_A ATP-dependent RNA helic 99.9 2.8E-27 9.4E-32 227.8 17.9 163 82-250 8-172 (191)
45 4gl2_A Interferon-induced heli 99.9 8.4E-28 2.9E-32 272.4 14.8 105 131-239 400-517 (699)
46 2xau_A PRE-mRNA-splicing facto 99.9 1.7E-27 5.8E-32 273.6 15.4 223 7-242 184-445 (773)
47 3o8b_A HCV NS3 protease/helica 99.9 9.8E-28 3.3E-32 269.2 12.2 199 6-243 295-517 (666)
48 4a2w_A RIG-I, retinoic acid in 99.9 2.7E-26 9.2E-31 269.0 24.1 125 116-243 612-752 (936)
49 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.4E-26 4.9E-31 221.5 16.8 147 101-250 15-163 (185)
50 3i32_A Heat resistant RNA depe 99.9 4.8E-26 1.6E-30 234.2 21.3 153 105-260 2-156 (300)
51 2eyq_A TRCF, transcription-rep 99.9 2.6E-26 9E-31 273.6 20.8 217 7-241 705-923 (1151)
52 2wv9_A Flavivirin protease NS2 99.9 6.8E-27 2.3E-31 264.5 12.1 252 13-297 314-595 (673)
53 4f92_B U5 small nuclear ribonu 99.9 9.8E-26 3.3E-30 276.5 21.2 245 7-257 1019-1325(1724)
54 1gm5_A RECG; helicase, replica 99.9 8E-27 2.7E-31 267.4 10.0 218 7-243 470-700 (780)
55 2v6i_A RNA helicase; membrane, 99.9 6.4E-26 2.2E-30 244.2 13.9 200 8-238 70-289 (431)
56 2fwr_A DNA repair protein RAD2 99.9 3.8E-26 1.3E-30 247.2 10.0 215 8-239 171-453 (472)
57 2d7d_A Uvrabc system protein B 99.9 4.9E-25 1.7E-29 249.3 19.2 215 14-250 320-566 (661)
58 2oca_A DAR protein, ATP-depend 99.9 2E-25 6.8E-30 243.9 14.3 220 7-238 203-453 (510)
59 4f92_B U5 small nuclear ribonu 99.9 2.9E-25 9.8E-30 272.4 16.7 247 5-257 178-490 (1724)
60 2yjt_D ATP-dependent RNA helic 99.9 5.6E-27 1.9E-31 220.7 0.0 148 105-255 3-153 (170)
61 1c4o_A DNA nucleotide excision 99.9 1E-24 3.5E-29 246.8 16.1 214 14-250 314-560 (664)
62 3rc3_A ATP-dependent RNA helic 99.9 5.2E-25 1.8E-29 248.9 12.2 228 7-257 211-462 (677)
63 3h1t_A Type I site-specific re 99.9 2.4E-24 8.2E-29 240.1 16.6 219 7-229 273-545 (590)
64 3dmq_A RNA polymerase-associat 99.9 1.2E-23 4E-28 247.3 18.8 141 115-257 487-633 (968)
65 1z63_A Helicase of the SNF2/RA 99.9 1.8E-21 6.3E-26 212.0 20.1 131 117-249 325-464 (500)
66 3jux_A Protein translocase sub 99.9 1.1E-20 3.8E-25 210.7 20.2 168 66-242 411-589 (822)
67 1z3i_X Similar to RAD54-like; 99.8 2.2E-18 7.4E-23 194.5 23.5 120 118-240 400-528 (644)
68 3mwy_W Chromo domain-containin 99.8 8.6E-19 2.9E-23 202.4 19.0 132 117-251 556-697 (800)
69 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 7.8E-19 2.7E-23 206.4 18.8 237 7-251 374-719 (1038)
70 1z5z_A Helicase of the SNF2/RA 99.7 9E-18 3.1E-22 170.1 14.2 126 113-240 92-224 (271)
71 3fmo_B ATP-dependent RNA helic 99.5 1.2E-14 4E-19 149.0 7.7 90 6-95 208-298 (300)
72 3fe2_A Probable ATP-dependent 99.5 4.3E-14 1.5E-18 139.5 7.3 89 7-96 151-239 (242)
73 2pl3_A Probable ATP-dependent 99.5 5.4E-14 1.9E-18 137.8 7.4 90 6-95 144-233 (236)
74 3iuy_A Probable ATP-dependent 99.5 8.1E-14 2.8E-18 135.9 8.0 87 7-94 142-228 (228)
75 3ber_A Probable ATP-dependent 99.4 1.4E-13 4.7E-18 137.0 8.1 88 7-94 160-247 (249)
76 3ly5_A ATP-dependent RNA helic 99.4 1.4E-13 4.9E-18 137.9 8.3 84 7-90 175-258 (262)
77 3bor_A Human initiation factor 99.4 2.8E-13 9.7E-18 133.3 8.5 87 8-95 149-235 (237)
78 1wrb_A DJVLGB; RNA helicase, D 99.4 3E-13 1E-17 134.1 7.8 100 7-109 149-252 (253)
79 1q0u_A Bstdead; DEAD protein, 99.4 3.3E-13 1.1E-17 130.9 7.2 89 7-96 125-213 (219)
80 1vec_A ATP-dependent RNA helic 99.4 7.8E-13 2.7E-17 126.4 9.7 85 7-92 121-205 (206)
81 2ipc_A Preprotein translocase 99.4 1.4E-11 4.7E-16 140.3 21.2 128 112-241 422-699 (997)
82 2oxc_A Probable ATP-dependent 99.4 2.9E-13 9.9E-18 132.5 6.3 88 6-94 140-228 (230)
83 2gxq_A Heat resistant RNA depe 99.4 5.6E-13 1.9E-17 127.3 8.1 87 7-94 119-205 (207)
84 3dkp_A Probable ATP-dependent 99.4 9.7E-13 3.3E-17 129.6 9.4 91 6-96 147-242 (245)
85 1qde_A EIF4A, translation init 99.4 9.4E-13 3.2E-17 127.6 8.7 89 7-96 130-218 (224)
86 1t6n_A Probable ATP-dependent 99.3 1.8E-12 6.2E-17 125.4 7.7 86 7-93 133-219 (220)
87 2vl7_A XPD; helicase, unknown 99.1 6.7E-11 2.3E-15 130.6 7.4 102 130-239 383-520 (540)
88 3llm_A ATP-dependent RNA helic 99.0 3.1E-10 1E-14 111.5 8.1 77 7-90 154-232 (235)
89 3crv_A XPD/RAD3 related DNA he 98.8 1.2E-07 4.2E-12 104.7 19.8 74 130-212 392-473 (551)
90 3b6e_A Interferon-induced heli 98.4 1.5E-07 5.3E-12 89.5 5.1 66 8-73 132-216 (216)
91 1rif_A DAR protein, DNA helica 98.2 7E-07 2.4E-11 89.7 3.9 68 7-82 203-270 (282)
92 4a15_A XPD helicase, ATP-depen 97.9 8.2E-05 2.8E-09 83.3 13.7 111 122-239 440-583 (620)
93 2fz4_A DNA repair protein RAD2 97.7 6E-05 2E-09 74.0 7.0 61 8-77 171-231 (237)
94 3hgt_A HDA1 complex subunit 3; 96.3 0.024 8.1E-07 58.2 11.6 122 114-243 106-240 (328)
95 1gm5_A RECG; helicase, replica 92.5 0.28 9.7E-06 56.1 9.0 80 131-211 417-500 (780)
96 3oiy_A Reverse gyrase helicase 91.2 0.89 3E-05 47.1 10.4 80 130-210 63-148 (414)
97 2eyq_A TRCF, transcription-rep 89.0 1.5 5.2E-05 52.3 11.2 80 129-209 650-733 (1151)
98 2gxq_A Heat resistant RNA depe 87.4 2 6.8E-05 39.5 8.8 73 131-207 72-150 (207)
99 3ber_A Probable ATP-dependent 86.4 2.7 9.3E-05 40.5 9.4 73 131-207 111-192 (249)
100 4ddu_A Reverse gyrase; topoiso 86.1 1.7 5.9E-05 51.6 9.2 79 130-210 120-205 (1104)
101 2oxc_A Probable ATP-dependent 85.8 2 6.8E-05 40.7 8.0 72 131-207 92-172 (230)
102 1t6n_A Probable ATP-dependent 84.3 4.1 0.00014 37.9 9.4 72 132-207 83-164 (220)
103 1vec_A ATP-dependent RNA helic 83.0 3.6 0.00012 37.7 8.3 73 131-207 71-152 (206)
104 3bor_A Human initiation factor 81.4 2.7 9.2E-05 40.0 6.9 73 131-207 98-179 (237)
105 2pl3_A Probable ATP-dependent 80.7 7.2 0.00025 36.7 9.7 73 130-207 96-177 (236)
106 3iuy_A Probable ATP-dependent 80.3 4 0.00014 38.3 7.6 74 130-207 93-173 (228)
107 4a2p_A RIG-I, retinoic acid in 79.7 3.9 0.00013 43.5 8.2 75 131-209 55-138 (556)
108 3fe2_A Probable ATP-dependent 79.6 6 0.00021 37.5 8.8 73 131-207 102-182 (242)
109 1qde_A EIF4A, translation init 77.9 2.9 9.9E-05 39.0 5.8 72 131-207 82-161 (224)
110 3ly5_A ATP-dependent RNA helic 76.8 15 0.00052 35.4 10.8 73 131-207 126-207 (262)
111 1wp9_A ATP-dependent RNA helic 76.1 9.6 0.00033 39.0 9.7 75 130-209 51-133 (494)
112 1xti_A Probable ATP-dependent 75.1 7.7 0.00026 39.1 8.5 73 131-207 76-158 (391)
113 3fmo_B ATP-dependent RNA helic 74.0 2.5 8.6E-05 42.1 4.4 70 131-208 162-242 (300)
114 2i4i_A ATP-dependent RNA helic 73.9 15 0.0005 37.4 10.3 72 132-207 102-181 (417)
115 1wrb_A DJVLGB; RNA helicase, D 73.8 8.1 0.00028 36.8 7.8 73 131-207 100-180 (253)
116 2v1x_A ATP-dependent DNA helic 73.2 10 0.00035 41.6 9.4 58 131-190 84-144 (591)
117 1q0u_A Bstdead; DEAD protein, 72.1 2.5 8.6E-05 39.5 3.6 73 131-207 72-156 (219)
118 2db3_A ATP-dependent RNA helic 71.7 17 0.00059 37.8 10.4 73 131-207 129-209 (434)
119 3tbk_A RIG-I helicase domain; 71.5 3.8 0.00013 43.5 5.3 75 131-209 52-135 (555)
120 1oyw_A RECQ helicase, ATP-depe 71.1 8.4 0.00029 41.6 8.0 58 131-190 65-123 (523)
121 1fuu_A Yeast initiation factor 70.0 13 0.00044 37.4 8.7 73 131-208 89-169 (394)
122 1s2m_A Putative ATP-dependent 69.4 12 0.0004 37.9 8.3 75 131-209 89-171 (400)
123 4a2q_A RIG-I, retinoic acid in 69.4 6.6 0.00022 44.6 6.9 74 131-208 296-378 (797)
124 1hv8_A Putative ATP-dependent 68.4 15 0.00052 36.3 8.8 73 130-207 73-153 (367)
125 1c4o_A DNA nucleotide excision 65.2 38 0.0013 37.6 12.0 87 109-196 32-144 (664)
126 1w36_D RECD, exodeoxyribonucle 63.8 5.2 0.00018 44.2 4.5 37 33-73 262-298 (608)
127 1gku_B Reverse gyrase, TOP-RG; 62.4 8.3 0.00028 45.5 6.1 75 131-207 99-181 (1054)
128 3b6e_A Interferon-induced heli 62.3 10 0.00035 34.6 5.7 73 131-207 82-168 (216)
129 2ykg_A Probable ATP-dependent 62.3 16 0.00055 40.3 8.2 74 132-209 62-144 (696)
130 3dkp_A Probable ATP-dependent 59.5 5.2 0.00018 38.0 3.1 73 131-207 98-181 (245)
131 2z0m_A 337AA long hypothetical 59.2 24 0.00083 34.3 8.2 72 131-207 56-135 (337)
132 2j0s_A ATP-dependent RNA helic 57.7 34 0.0012 34.6 9.2 74 130-207 104-185 (410)
133 3hjh_A Transcription-repair-co 57.7 55 0.0019 35.0 11.1 116 107-224 16-148 (483)
134 4gl2_A Interferon-induced heli 56.8 4.9 0.00017 44.5 2.7 72 132-207 57-142 (699)
135 1wv9_A Rhodanese homolog TT165 54.8 12 0.00041 30.1 4.1 35 132-168 54-88 (94)
136 3dmn_A Putative DNA helicase; 54.2 1.2E+02 0.0041 27.1 13.0 78 116-211 44-124 (174)
137 3gk5_A Uncharacterized rhodane 53.5 9.7 0.00033 31.6 3.5 37 131-169 55-91 (108)
138 2d7d_A Uvrabc system protein B 53.4 58 0.002 36.1 10.8 113 108-222 35-177 (661)
139 1sxj_E Activator 1 40 kDa subu 53.4 12 0.00042 37.3 4.9 41 32-73 133-173 (354)
140 3eiq_A Eukaryotic initiation f 52.6 36 0.0012 34.3 8.3 74 130-207 107-189 (414)
141 3g5j_A Putative ATP/GTP bindin 50.4 19 0.00064 30.4 4.9 37 132-170 90-127 (134)
142 3hix_A ALR3790 protein; rhodan 48.8 14 0.00049 30.4 3.8 37 131-169 52-89 (106)
143 2fsf_A Preprotein translocase 48.7 38 0.0013 38.9 8.3 58 128-190 112-171 (853)
144 3foj_A Uncharacterized protein 47.8 12 0.00042 30.3 3.2 36 131-168 56-91 (100)
145 4a2w_A RIG-I, retinoic acid in 47.8 9.4 0.00032 44.4 3.3 74 131-208 296-378 (936)
146 1tf5_A Preprotein translocase 47.7 48 0.0016 38.0 8.9 59 127-190 120-180 (844)
147 3iwh_A Rhodanese-like domain p 46.4 11 0.00038 31.3 2.7 36 131-168 56-91 (103)
148 3eme_A Rhodanese-like domain p 45.7 12 0.0004 30.6 2.7 36 131-168 56-91 (103)
149 1nkt_A Preprotein translocase 45.4 49 0.0017 38.2 8.5 60 126-190 147-208 (922)
150 2jtq_A Phage shock protein E; 44.3 44 0.0015 25.9 5.9 36 130-168 40-76 (85)
151 2oca_A DAR protein, ATP-depend 43.5 31 0.0011 36.4 6.3 72 131-210 157-234 (510)
152 2ipc_A Preprotein translocase 43.5 61 0.0021 37.6 8.9 60 126-190 115-176 (997)
153 2kjq_A DNAA-related protein; s 42.1 9.6 0.00033 33.7 1.7 41 33-74 83-124 (149)
154 3l9o_A ATP-dependent RNA helic 40.0 41 0.0014 39.9 7.1 65 131-209 227-298 (1108)
155 1gmx_A GLPE protein; transfera 39.5 19 0.00065 29.6 3.1 37 131-169 58-95 (108)
156 2hhg_A Hypothetical protein RP 38.5 22 0.00076 30.5 3.5 38 130-169 85-123 (139)
157 3d1p_A Putative thiosulfate su 38.4 22 0.00075 30.6 3.5 37 131-169 91-128 (139)
158 4a4z_A Antiviral helicase SKI2 38.0 54 0.0019 38.3 7.7 66 130-207 81-153 (997)
159 3kta_B Chromosome segregation 37.8 28 0.00096 31.7 4.2 39 34-72 87-125 (173)
160 2fsx_A RV0390, COG0607: rhodan 37.3 26 0.0009 30.6 3.8 37 130-168 79-116 (148)
161 3ilm_A ALR3790 protein; rhodan 37.1 26 0.00089 30.6 3.8 36 131-168 56-92 (141)
162 4a15_A XPD helicase, ATP-depen 37.0 4.8 0.00016 44.6 -1.4 43 5-48 172-219 (620)
163 1tq1_A AT5G66040, senescence-a 36.9 21 0.00071 30.5 3.0 38 130-169 81-119 (129)
164 3i5x_A ATP-dependent RNA helic 36.4 1E+02 0.0034 32.8 9.0 72 132-207 147-232 (563)
165 3fht_A ATP-dependent RNA helic 36.3 28 0.00096 35.0 4.4 71 131-209 95-176 (412)
166 1jr3_D DNA polymerase III, del 35.5 32 0.0011 34.3 4.6 42 32-74 75-117 (343)
167 2i3b_A HCR-ntpase, human cance 35.4 35 0.0012 31.4 4.6 42 31-75 103-146 (189)
168 2chg_A Replication factor C sm 35.3 58 0.002 29.0 6.0 39 32-71 101-139 (226)
169 3u61_B DNA polymerase accessor 34.4 23 0.0008 34.9 3.3 40 32-71 104-143 (324)
170 3ec2_A DNA replication protein 34.2 28 0.00097 31.0 3.6 45 32-76 99-145 (180)
171 3flh_A Uncharacterized protein 34.1 19 0.00064 30.6 2.2 37 131-169 71-109 (124)
172 3syl_A Protein CBBX; photosynt 34.0 36 0.0012 33.1 4.6 37 35-71 132-176 (309)
173 2l82_A Designed protein OR32; 33.6 1E+02 0.0036 26.0 6.6 46 134-181 5-50 (162)
174 1qxn_A SUD, sulfide dehydrogen 33.5 26 0.00088 30.4 3.1 38 130-169 81-119 (137)
175 3sqw_A ATP-dependent RNA helic 33.4 1.2E+02 0.004 32.6 9.0 72 132-207 96-181 (579)
176 1vee_A Proline-rich protein fa 33.3 33 0.0011 29.4 3.7 36 131-168 74-110 (134)
177 2k0z_A Uncharacterized protein 33.3 39 0.0013 27.8 4.1 38 129-168 54-91 (110)
178 2gno_A DNA polymerase III, gam 33.2 31 0.0011 34.3 4.0 38 32-70 81-118 (305)
179 3pey_A ATP-dependent RNA helic 32.8 50 0.0017 32.8 5.6 71 130-209 74-153 (395)
180 2p6r_A Afuhel308 helicase; pro 32.1 34 0.0012 37.9 4.6 72 131-209 68-146 (702)
181 2fz4_A DNA repair protein RAD2 31.8 91 0.0031 29.4 7.0 60 116-190 119-179 (237)
182 2zj8_A DNA helicase, putative 31.2 39 0.0013 37.6 4.8 72 131-209 68-146 (720)
183 1a5t_A Delta prime, HOLB; zinc 30.8 41 0.0014 33.6 4.5 28 32-60 107-134 (334)
184 3nhv_A BH2092 protein; alpha-b 30.7 26 0.00089 30.7 2.6 37 131-169 72-110 (144)
185 1njg_A DNA polymerase III subu 29.4 40 0.0014 30.5 3.8 38 33-71 126-163 (250)
186 1l8q_A Chromosomal replication 29.4 36 0.0012 33.5 3.8 42 33-75 98-141 (324)
187 2fwr_A DNA repair protein RAD2 29.3 79 0.0027 32.7 6.6 59 117-190 120-179 (472)
188 4ag6_A VIRB4 ATPase, type IV s 29.2 30 0.001 35.4 3.2 42 34-76 263-307 (392)
189 3mwy_W Chromo domain-containin 29.0 86 0.003 35.4 7.3 62 129-191 284-354 (800)
190 1z63_A Helicase of the SNF2/RA 28.3 75 0.0026 33.2 6.2 54 128-191 83-137 (500)
191 3te6_A Regulatory protein SIR3 27.8 49 0.0017 33.3 4.4 40 33-75 132-174 (318)
192 2xgj_A ATP-dependent RNA helic 27.1 89 0.003 36.6 7.0 65 130-207 128-198 (1010)
193 2va8_A SSO2462, SKI2-type heli 26.7 40 0.0014 37.4 3.9 72 131-209 75-153 (715)
194 3fmp_B ATP-dependent RNA helic 26.4 36 0.0012 35.5 3.3 69 132-208 163-242 (479)
195 2z4s_A Chromosomal replication 25.8 56 0.0019 34.2 4.6 40 33-72 194-235 (440)
196 1urh_A 3-mercaptopyruvate sulf 25.5 50 0.0017 31.9 3.9 38 130-169 229-267 (280)
197 1g5t_A COB(I)alamin adenosyltr 25.2 44 0.0015 31.3 3.3 53 32-84 119-173 (196)
198 2p65_A Hypothetical protein PF 25.0 19 0.00064 31.6 0.6 13 34-46 116-128 (187)
199 3i2v_A Adenylyltransferase and 24.5 58 0.002 27.0 3.7 37 133-169 74-115 (127)
200 3h4m_A Proteasome-activating n 24.4 40 0.0014 32.4 2.9 39 35-73 112-163 (285)
201 2r2a_A Uncharacterized protein 24.3 27 0.00091 32.6 1.6 40 34-73 88-132 (199)
202 4f67_A UPF0176 protein LPG2838 24.3 65 0.0022 31.5 4.5 43 125-169 175-218 (265)
203 1rif_A DAR protein, DNA helica 24.1 1.1E+02 0.0037 29.3 6.1 69 131-207 157-231 (282)
204 3fho_A ATP-dependent RNA helic 23.3 1.1E+02 0.0039 32.2 6.6 69 131-208 189-266 (508)
205 2zqk_M Putative translocated i 23.2 42 0.0014 25.7 2.1 22 412-434 24-45 (77)
206 2orw_A Thymidine kinase; TMTK, 22.4 1.3E+02 0.0045 27.1 6.0 36 33-72 76-111 (184)
207 1iqp_A RFCS; clamp loader, ext 22.2 66 0.0023 31.1 4.1 39 32-71 109-147 (327)
208 1jbk_A CLPB protein; beta barr 21.8 81 0.0028 27.2 4.3 26 34-59 116-148 (195)
209 2b8t_A Thymidine kinase; deoxy 21.7 1.9E+02 0.0065 27.3 7.1 56 10-71 68-123 (223)
210 1jql_B DNA polymerase III, del 21.4 3.3E+02 0.011 23.1 8.2 60 14-75 59-118 (140)
211 3e1s_A Exodeoxyribonuclease V, 21.4 52 0.0018 35.9 3.4 37 32-72 278-314 (574)
212 1d2n_A N-ethylmaleimide-sensit 21.1 54 0.0018 31.3 3.1 44 33-76 124-177 (272)
213 1jr3_A DNA polymerase III subu 21.0 84 0.0029 31.1 4.7 38 32-70 118-155 (373)
214 1sxj_C Activator 1 40 kDa subu 20.9 66 0.0023 31.9 3.8 39 32-71 109-147 (340)
215 1sxj_B Activator 1 37 kDa subu 20.9 48 0.0016 32.1 2.7 38 33-71 107-144 (323)
216 2xzm_B RPS0E; ribosome, transl 20.9 60 0.0021 31.5 3.3 37 117-153 51-87 (241)
217 1sxj_D Activator 1 41 kDa subu 20.8 66 0.0023 31.6 3.8 39 32-71 132-170 (353)
218 2v1u_A Cell division control p 20.7 60 0.002 32.2 3.5 28 34-61 131-159 (387)
219 4aby_A DNA repair protein RECN 20.2 69 0.0024 32.6 3.9 39 35-73 317-355 (415)
No 1
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.3e-41 Score=374.67 Aligned_cols=319 Identities=28% Similarity=0.454 Sum_probs=253.9
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCC-------CCCcEEEEeccCChhHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-------KHRQTFLFSATQTKSVQ 79 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp-------~~~Q~llfSATl~~~v~ 79 (564)
.+++|+|||||+|++++.+.....++++++|||||||+++++||...+..|+..++ ..+|+++||||+++.+.
T Consensus 200 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~ 279 (563)
T 3i5x_A 200 LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQ 279 (563)
T ss_dssp HCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHH
T ss_pred CCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHH
Confidence 37899999999999998765334568899999999999999999999999987763 36799999999999999
Q ss_pred HHHHHhcCCCCccccccc--ccccCCccceeEEEEcCc-ccHHH----HHHHHHHH-cCCCcEEEEeCChHHHHHHHHHH
Q 008461 80 DLARLSLKDPQYLSVHEE--SVTATPNRLQQTAMIVPL-EQKLD----MLWSFIKA-HLNSKILVFLTSCKQVKYVFEAF 151 (564)
Q Consensus 80 ~l~~~~l~~p~~i~v~~~--~~~~~p~~l~q~~~~~~~-~~Kl~----~L~~~L~~-~~~~k~IVF~~t~k~v~~l~e~L 151 (564)
.++..++.+|..+.+... ........+.+.+..++. ..++. .+...+.. ..+.++||||+|++.|+.++..|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L 359 (563)
T 3i5x_A 280 KLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL 359 (563)
T ss_dssp HHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHH
Confidence 999999888876654322 222344556666666653 23332 33333333 44779999999999999999999
Q ss_pred HhhCC-CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCC
Q 008461 152 KKLRP-GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS 229 (564)
Q Consensus 152 ~~l~~-gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~ 229 (564)
....+ ++.+..+||+|++.+|..+++.|++ ...|||||+++++|||+ |+|++||+|++|.++..|+||+|||||.|+
T Consensus 360 ~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDi-p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 438 (563)
T 3i5x_A 360 KNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF-PNVHEVLQIGVPSELANYIHRIGRTARSGK 438 (563)
T ss_dssp HHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCC-TTCCEEEEESCCSSTTHHHHHHTTSSCTTC
T ss_pred HHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCc-ccCCEEEEECCCCchhhhhhhcCccccCCC
Confidence 87644 8899999999999999999999999 99999999999999999 999999999999999999999999999999
Q ss_pred CceEEEEeCcchHHHHHHHHHc-CCCccccccccccchhHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcccccccccc
Q 008461 230 GGRSVLFLTPTEMKMLEKLREA-KIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDV 308 (564)
Q Consensus 230 ~G~~il~l~~~e~~~l~~L~~~-~i~i~~~~~~~~~~~~i~~~l~~~~~~~~~l~~~a~~af~sy~rs~~~~~~k~if~~ 308 (564)
.|.|++|+++.+..+++.|... ++++........ ...+...+...+.++++....+.++|++|++++.. .|.+
T Consensus 439 ~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 512 (563)
T 3i5x_A 439 EGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEP-SEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIK-----EYRF 512 (563)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEECC-CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHTHH-----HHTC
T ss_pred CceEEEEEchhHHHHHHHHHHHhCCCcccccccCc-cHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH-----HhCC
Confidence 9999999999999999999876 777766543222 23344556666777888888889999999998752 2333
Q ss_pred cCCC-HHHHHHhcCC-CCCC--cccccc
Q 008461 309 TKLS-IDEFSASLGL-PMTP--KIRFLN 332 (564)
Q Consensus 309 ~~l~-l~~~A~s~GL-~~~P--~i~~~~ 332 (564)
...+ +.++|.+||+ ...| ++++++
T Consensus 513 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 540 (563)
T 3i5x_A 513 SERRILPEIASTYGVLLNDPQLKIPVSR 540 (563)
T ss_dssp CHHHHHHHHHTHHHHHTTCTTCCEEECH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCCcccH
Confidence 3332 5678888884 4555 456644
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-40 Score=355.45 Aligned_cols=228 Identities=29% Similarity=0.493 Sum_probs=209.1
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhC--CCCCcEEEEeccCChhHHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL--PKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l--p~~~Q~llfSATl~~~v~~l~~~ 84 (564)
.+++|+|||||+|++++.+. .+.+.++++|||||||+++++||...+..|+..+ ++.+|+++||||+|..+..++..
T Consensus 178 ~~~~Ivv~Tp~~l~~~l~~~-~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~ 256 (434)
T 2db3_A 178 RGCHVVIATPGRLLDFVDRT-FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGE 256 (434)
T ss_dssp TCCSEEEECHHHHHHHHHTT-SCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHT
T ss_pred cCCCEEEEChHHHHHHHHhC-CcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHH
Confidence 57899999999999999876 5678999999999999999999999999999985 67899999999999999999999
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 164 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH 164 (564)
++.+|..+.+... ......+.+.+..++...|...|..++.... .++||||+|++.++.++..|... ++.+..+|
T Consensus 257 ~l~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~--~~~~~~lh 331 (434)
T 2db3_A 257 FLKNYVFVAIGIV--GGACSDVKQTIYEVNKYAKRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEK--EFPTTSIH 331 (434)
T ss_dssp TCSSCEEEEESST--TCCCTTEEEEEEECCGGGHHHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHT--TCCEEEES
T ss_pred hccCCEEEEeccc--cccccccceEEEEeCcHHHHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhC--CCCEEEEe
Confidence 9999887766433 2345678889999999999999999998875 45999999999999999999985 89999999
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcch
Q 008461 165 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241 (564)
Q Consensus 165 g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e 241 (564)
|++++.+|..+++.|++ ...|||||++++||||+ |+|++||+||+|.++.+|+||+|||||.|+.|.+++|+++.+
T Consensus 332 g~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi-~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~ 408 (434)
T 2db3_A 332 GDRLQSQREQALRDFKNGSMKVLIATSVASRGLDI-KNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408 (434)
T ss_dssp TTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCC-TTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTT
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCc-ccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccc
Confidence 99999999999999999 99999999999999999 999999999999999999999999999999999999999653
No 3
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.7e-41 Score=372.42 Aligned_cols=319 Identities=28% Similarity=0.464 Sum_probs=252.7
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCC-------CCCcEEEEeccCChhHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-------KHRQTFLFSATQTKSVQ 79 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp-------~~~Q~llfSATl~~~v~ 79 (564)
.+++|+|||||+|++++.......++++++|||||||+++++||...+..|+..++ ..+|+++||||+++.+.
T Consensus 149 ~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~ 228 (579)
T 3sqw_A 149 LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQ 228 (579)
T ss_dssp HCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHH
T ss_pred CCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHH
Confidence 36899999999999999765344578899999999999999999999999988764 36799999999999999
Q ss_pred HHHHHhcCCCCccccccc--ccccCCccceeEEEEcCc-ccHH----HHHHHHHHH-cCCCcEEEEeCChHHHHHHHHHH
Q 008461 80 DLARLSLKDPQYLSVHEE--SVTATPNRLQQTAMIVPL-EQKL----DMLWSFIKA-HLNSKILVFLTSCKQVKYVFEAF 151 (564)
Q Consensus 80 ~l~~~~l~~p~~i~v~~~--~~~~~p~~l~q~~~~~~~-~~Kl----~~L~~~L~~-~~~~k~IVF~~t~k~v~~l~e~L 151 (564)
.++..++.+|..+.+... ........+.+.+..++. ..+. ..+...+.. ..+.++||||+|+..|+.++..|
T Consensus 229 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L 308 (579)
T 3sqw_A 229 KLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL 308 (579)
T ss_dssp HHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHH
Confidence 999999988876654322 222344556666666654 2222 333334433 44689999999999999999999
Q ss_pred HhhCC-CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCC
Q 008461 152 KKLRP-GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS 229 (564)
Q Consensus 152 ~~l~~-gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~ 229 (564)
....+ ++.+..+||+|++.+|..+++.|+. ...|||||+++++|||+ |+|++||+|++|.++..|+||+|||||.|+
T Consensus 309 ~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDi-p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 387 (579)
T 3sqw_A 309 KNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF-PNVHEVLQIGVPSELANYIHRIGRTARSGK 387 (579)
T ss_dssp HHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCC-TTCCEEEEESCCSSTTHHHHHHTTSSCTTC
T ss_pred HHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCc-ccCCEEEEcCCCCCHHHhhhhccccccCCC
Confidence 87644 8899999999999999999999999 99999999999999999 999999999999999999999999999999
Q ss_pred CceEEEEeCcchHHHHHHHHHc-CCCccccccccccchhHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcccccccccc
Q 008461 230 GGRSVLFLTPTEMKMLEKLREA-KIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDV 308 (564)
Q Consensus 230 ~G~~il~l~~~e~~~l~~L~~~-~i~i~~~~~~~~~~~~i~~~l~~~~~~~~~l~~~a~~af~sy~rs~~~~~~k~if~~ 308 (564)
.|.|++|+++.+..+++.|+.. ++++....... ....+...+...+..+++....+.+++++|++++. ..+.+
T Consensus 388 ~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 461 (579)
T 3sqw_A 388 EGSSVLFICKDELPFVRELEDAKNIVIAKQEKYE-PSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCI-----KEYRF 461 (579)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEEC-CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-----HHHTC
T ss_pred CceEEEEEcccHHHHHHHHHHHhCCCcccccCCC-ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----HHhCC
Confidence 9999999999999999999876 66665543322 22334556666777777777888889999998864 23333
Q ss_pred cCCC-HHHHHHhcCC-CCCC--cccccc
Q 008461 309 TKLS-IDEFSASLGL-PMTP--KIRFLN 332 (564)
Q Consensus 309 ~~l~-l~~~A~s~GL-~~~P--~i~~~~ 332 (564)
...+ +..+|..||+ ...| ++++.+
T Consensus 462 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 489 (579)
T 3sqw_A 462 SERRILPEIASTYGVLLNDPQLKIPVSR 489 (579)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTCCEEECH
T ss_pred CcccHHHHHHHHHHHHhCCCCCCCccch
Confidence 4443 4778888885 3445 566544
No 4
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.2e-38 Score=334.53 Aligned_cols=249 Identities=26% Similarity=0.472 Sum_probs=223.4
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+++|+|+|||+|++++... .+.+.++++||+||||++++++|...+..++..+++..|++++|||++..+..+...++
T Consensus 154 ~~~~ivv~Tp~~l~~~l~~~-~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 232 (410)
T 2j0s_A 154 YGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFM 232 (410)
T ss_dssp HCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTC
T ss_pred cCCCEEEcCHHHHHHHHHhC-CccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHc
Confidence 36799999999999998875 56788999999999999999999999999999999999999999999999888888888
Q ss_pred CCCCcccccccccccCCccceeEEEEcCccc-HHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 165 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~-Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg 165 (564)
.+|..+.+... ...+..+.+.+..++... +...|..++......++||||+|++.++.+++.|... ++.+..+||
T Consensus 233 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~ 308 (410)
T 2j0s_A 233 TDPIRILVKRD--ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHG 308 (410)
T ss_dssp SSCEEECCCGG--GCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECT
T ss_pred CCCEEEEecCc--cccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC--CCceEEeeC
Confidence 88877655433 234566777777776544 8999999998888889999999999999999999885 889999999
Q ss_pred CCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHH
Q 008461 166 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244 (564)
Q Consensus 166 ~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~ 244 (564)
+|++.+|..+++.|++ ...|||||+++++|||+ |++++||+||+|.++..|+||+||+||.|+.|.+++|+++.+...
T Consensus 309 ~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi-~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (410)
T 2j0s_A 309 DMPQKERESIMKEFRSGASRVLISTDVWARGLDV-PQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRI 387 (410)
T ss_dssp TSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCC-TTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCc-ccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHH
Confidence 9999999999999999 99999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCCccccccc
Q 008461 245 LEKLREA-KIPIHFTKAN 261 (564)
Q Consensus 245 l~~L~~~-~i~i~~~~~~ 261 (564)
++.+... +..++.++.+
T Consensus 388 ~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 388 LRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp HHHHHHHTTCCCEECCSC
T ss_pred HHHHHHHhCCCceecccc
Confidence 9998775 6666666554
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.4e-37 Score=322.64 Aligned_cols=247 Identities=30% Similarity=0.472 Sum_probs=224.2
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+++|+||||++|++++... ...+.++++||+||||++++.+|...+..++..+++..|++++|||++..+.......+
T Consensus 138 ~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~ 216 (400)
T 1s2m_A 138 ETVHILVGTPGRVLDLASRK-VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHL 216 (400)
T ss_dssp SCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHC
T ss_pred CCCCEEEEchHHHHHHHHhC-CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHc
Confidence 57899999999999888765 45678999999999999999999999999999999999999999999999999888888
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
.+|..+.+... .....+.+++..+....++..+..++......++||||++.+.++.++..|... ++.+..+||+
T Consensus 217 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~ 291 (400)
T 1s2m_A 217 HKPYEINLMEE---LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL--GYSCYYSHAR 291 (400)
T ss_dssp SSCEEESCCSS---CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTT
T ss_pred CCCeEEEeccc---cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc--CCCeEEecCC
Confidence 88866554332 345667888888888899999999999888899999999999999999999986 8899999999
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHH
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l 245 (564)
|++.+|..+++.|++ ...|||||+++++|+|+ |++++||+|++|.++..|+||+||+||.|+.|.|++|+++.+...+
T Consensus 292 ~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi-p~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~ 370 (400)
T 1s2m_A 292 MKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDI-QAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNL 370 (400)
T ss_dssp SCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCC-TTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHH
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEcCccccCCCc-cCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHH
Confidence 999999999999999 99999999999999999 8999999999999999999999999999999999999999999988
Q ss_pred HHHHHc-CCCcccccc
Q 008461 246 EKLREA-KIPIHFTKA 260 (564)
Q Consensus 246 ~~L~~~-~i~i~~~~~ 260 (564)
..+.+. +++++.++.
T Consensus 371 ~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 371 YKIEQELGTEIAAIPA 386 (400)
T ss_dssp HHHHHHHTCCCEECCS
T ss_pred HHHHHHhCCCcccccc
Confidence 888876 777776654
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=329.97 Aligned_cols=249 Identities=27% Similarity=0.461 Sum_probs=208.2
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
++++|+|||||+|++++... .+.+.++++||+||||++++++|...+..++..+++..|++++|||++..+..+...++
T Consensus 158 ~~~~iiv~T~~~l~~~l~~~-~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 236 (414)
T 3eiq_A 158 EAPHIIVGTPGRVFDMLNRR-YLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFM 236 (414)
T ss_dssp TCCSEEEECHHHHHHHHHHT-SSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTC
T ss_pred CCCCEEEECHHHHHHHHHcC-CcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHc
Confidence 67899999999999999875 56678899999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcc-cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLE-QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 165 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~-~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg 165 (564)
.+|..+.+... ...+..+.+.+..+... .++..+..++......++||||++++.++.+++.|... ++.+..+||
T Consensus 237 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~h~ 312 (414)
T 3eiq_A 237 RDPIRILVKKE--ELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR--DFTVSAMHG 312 (414)
T ss_dssp SSCEEECCCCC--CCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT--TCCCEEC--
T ss_pred CCCEEEEecCC--ccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc--CCeEEEecC
Confidence 88877665433 23456677777776654 59999999999888899999999999999999999875 899999999
Q ss_pred CCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHH
Q 008461 166 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244 (564)
Q Consensus 166 ~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~ 244 (564)
+|++.+|..+++.|++ ...|||||+++++|||+ |+|++||+|++|.+...|+||+||+||.|+.|.|++|+++.+...
T Consensus 313 ~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi-p~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 313 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDV-QQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRT 391 (414)
T ss_dssp -CHHHHHHHHHHHHSCC---CEEECSSCC--CCG-GGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEECCccccCCCc-cCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHH
Confidence 9999999999999999 89999999999999999 899999999999999999999999999999999999999999998
Q ss_pred HHHHHHc-CCCccccccc
Q 008461 245 LEKLREA-KIPIHFTKAN 261 (564)
Q Consensus 245 l~~L~~~-~i~i~~~~~~ 261 (564)
++.+... +..+..+..+
T Consensus 392 ~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 392 LRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp HHHHHHHTTCCCEECCC-
T ss_pred HHHHHHHHcCCccccChh
Confidence 8888776 6666665443
No 7
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=328.43 Aligned_cols=238 Identities=33% Similarity=0.502 Sum_probs=209.9
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHh--CCC--CCcEEEEeccCChhHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ--LPK--HRQTFLFSATQTKSVQDLA 82 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~--lp~--~~Q~llfSATl~~~v~~l~ 82 (564)
.+++|+||||++|++++... .+.+.++++|||||||++++++|...+..++.. ++. .+|++++|||++..+..++
T Consensus 150 ~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~ 228 (417)
T 2i4i_A 150 RGCHLLVATPGRLVDMMERG-KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLA 228 (417)
T ss_dssp TCCSEEEECHHHHHHHHHTT-SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHH
T ss_pred CCCCEEEEChHHHHHHHHcC-CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHH
Confidence 46899999999999998875 567899999999999999999999999999984 443 6799999999999999999
Q ss_pred HHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc-CCCcEEEEeCChHHHHHHHHHHHhhCCCCCee
Q 008461 83 RLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLM 161 (564)
Q Consensus 83 ~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~-~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~ 161 (564)
..++.+|..+.+... ...+..+.+.+..++...+...+..++... .+.++||||+|++.++.+++.|... ++.+.
T Consensus 229 ~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~ 304 (417)
T 2i4i_A 229 RDFLDEYIFLAVGRV--GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE--GYACT 304 (417)
T ss_dssp HHHCSSCEEEEEC------CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT--TCCEE
T ss_pred HHHcCCCEEEEeCCC--CCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC--CCCee
Confidence 999998877655432 245667888899999999999999999876 4679999999999999999999885 89999
Q ss_pred eccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcc
Q 008461 162 CLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240 (564)
Q Consensus 162 ~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~ 240 (564)
.+||+|++.+|..+++.|++ ...|||||+++++|||+ |+|++||+|++|.++.+|+||+||+||.|+.|.+++|+++.
T Consensus 305 ~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi-p~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 383 (417)
T 2i4i_A 305 SIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDI-SNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 383 (417)
T ss_dssp EECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCC-CCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGG
T ss_pred EecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCc-ccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccc
Confidence 99999999999999999999 99999999999999999 99999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 008461 241 EMKMLEKLRE 250 (564)
Q Consensus 241 e~~~l~~L~~ 250 (564)
+..++..+.+
T Consensus 384 ~~~~~~~l~~ 393 (417)
T 2i4i_A 384 NINITKDLLD 393 (417)
T ss_dssp GGGGHHHHHH
T ss_pred cHHHHHHHHH
Confidence 8776655543
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.7e-37 Score=322.62 Aligned_cols=249 Identities=28% Similarity=0.461 Sum_probs=219.5
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCc-ccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHh
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld-~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
.+++|+||||++|++++.....+.+.++++||+||||++++ .+|...+..++..++...|++++|||++..+..++..+
T Consensus 142 ~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 221 (412)
T 3fht_A 142 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV 221 (412)
T ss_dssp CCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred CCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHh
Confidence 46799999999999999776677789999999999999887 78999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccccCCccceeEEEEcCc-ccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc
Q 008461 86 LKDPQYLSVHEESVTATPNRLQQTAMIVPL-EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 164 (564)
Q Consensus 86 l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~-~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH 164 (564)
+.+|..+.+.... ..+..+.+.++.+.. ..++..+..++......++||||+|++.++.++..|... ++.+..+|
T Consensus 222 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~ 297 (412)
T 3fht_A 222 VPDPNVIKLKREE--ETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE--GHQVALLS 297 (412)
T ss_dssp SSSCEEECCCGGG--SSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEEC
T ss_pred cCCCeEEeecccc--ccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC--CCeEEEec
Confidence 9998877665433 345667777776654 678889999998888899999999999999999999985 88999999
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCC------CCHhhHHHHhcccccCCCCceEEEEe
Q 008461 165 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSGGRSVLFL 237 (564)
Q Consensus 165 g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P------~s~~~YiqRiGRtgR~g~~G~~il~l 237 (564)
|+|++.+|..+++.|++ ...|||||+++++|||+ |++++||+||+| .+...|+||+||+||.|..|.+++|+
T Consensus 298 ~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi-p~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 376 (412)
T 3fht_A 298 GEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDV-EQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 376 (412)
T ss_dssp TTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCC-TTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCc-cCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEE
Confidence 99999999999999999 99999999999999999 999999999999 46789999999999999999999999
Q ss_pred Ccch-HHHHHHHHHc-CCCcccccc
Q 008461 238 TPTE-MKMLEKLREA-KIPIHFTKA 260 (564)
Q Consensus 238 ~~~e-~~~l~~L~~~-~i~i~~~~~ 260 (564)
.+.+ ..+++.+.+. +..+..+..
T Consensus 377 ~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 377 DSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp CSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred cChhhHHHHHHHHHHHCCccccCCC
Confidence 9876 5588888775 666555543
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.8e-36 Score=318.01 Aligned_cols=250 Identities=25% Similarity=0.479 Sum_probs=223.3
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCc-ccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHh
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld-~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
+.++|+|+||++|+.++... .+.+.++++||+||||++++ .+|...+..++..++...|++++|||++..+..+...+
T Consensus 127 ~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 205 (391)
T 1xti_A 127 NCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 205 (391)
T ss_dssp SCCSEEEECHHHHHHHHHTT-SSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHcC-CccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHH
Confidence 35799999999999888765 56689999999999999988 58999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccC
Q 008461 86 LKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 165 (564)
Q Consensus 86 l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg 165 (564)
+.+|..+.+.... ......+.+.+..++...+...+..++......++||||+|.+.++.+++.|... ++.+..+||
T Consensus 206 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~ 282 (391)
T 1xti_A 206 MQDPMEIFVDDET-KLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHR 282 (391)
T ss_dssp CSSCEEEECCCCC-CCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECT
T ss_pred cCCCeEEEecCcc-ccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC--CCcEEEEeC
Confidence 9988776654332 2345677888888999999999999999888899999999999999999999885 899999999
Q ss_pred CCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH-
Q 008461 166 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK- 243 (564)
Q Consensus 166 ~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~- 243 (564)
+|++.+|..+++.|++ ...|||||+++++|+|+ |++++||+|++|.++..|+||+||+||.|+.|.+++|+++.+..
T Consensus 283 ~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi-~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 361 (391)
T 1xti_A 283 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDI-ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 361 (391)
T ss_dssp TSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCC-TTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCc-ccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHH
Confidence 9999999999999999 99999999999999999 99999999999999999999999999999999999999987554
Q ss_pred HHHHHHHc-CCCccccccc
Q 008461 244 MLEKLREA-KIPIHFTKAN 261 (564)
Q Consensus 244 ~l~~L~~~-~i~i~~~~~~ 261 (564)
+++.+.+. ++++.+++..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 362 ILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp HHHHHHHHTTCCCEECCSC
T ss_pred HHHHHHHHhcCChhhCCcc
Confidence 78888765 7777766543
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.2e-36 Score=315.30 Aligned_cols=260 Identities=27% Similarity=0.426 Sum_probs=220.4
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCc-ccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHh
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld-~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
.+++|+||||++|+.++... .+.+.++++||+||||++.+ ++|...+..+...+++..|++++|||+++.+..+....
T Consensus 120 ~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 198 (395)
T 3pey_A 120 INAQVIVGTPGTVLDLMRRK-LMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKI 198 (395)
T ss_dssp BCCSEEEECHHHHHHHHHTT-CBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred CCCCEEEEcHHHHHHHHHcC-CcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHh
Confidence 46899999999999988765 56689999999999999887 78999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccccCCccceeEEEEcC-cccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc
Q 008461 86 LKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 164 (564)
Q Consensus 86 l~~p~~i~v~~~~~~~~p~~l~q~~~~~~-~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH 164 (564)
+.++..+.+.... ..+..+.+.+..+. ...+...+..++......++||||+++..++.+++.|... ++.+..+|
T Consensus 199 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~ 274 (395)
T 3pey_A 199 VPNANTLELQTNE--VNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE--GHEVSILH 274 (395)
T ss_dssp SCSCEEECCCGGG--CSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT--TCCCEEEC
T ss_pred CCCCeEEEccccc--cccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc--CCcEEEeC
Confidence 8888776654432 34455667776664 4567888888887777899999999999999999999985 88999999
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC------CHhhHHHHhcccccCCCCceEEEEe
Q 008461 165 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE------DVASYIHRVGRTARYNSGGRSVLFL 237 (564)
Q Consensus 165 g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~------s~~~YiqRiGRtgR~g~~G~~il~l 237 (564)
|+|++.+|..+++.|++ ...|||||+++++|||+ |++++||+||+|. ++..|+||+||+||.|+.|.+++|+
T Consensus 275 ~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi-p~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 353 (395)
T 3pey_A 275 GDLQTQERDRLIDDFREGRSKVLITTNVLARGIDI-PTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 353 (395)
T ss_dssp TTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCC-TTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCc-ccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEE
Confidence 99999999999999999 99999999999999999 8999999999999 9999999999999999999999999
Q ss_pred CcchHH-HHHHHHHc-C-CCccccccccccchhHHHHHHH
Q 008461 238 TPTEMK-MLEKLREA-K-IPIHFTKANTKRLQPVSGLLAA 274 (564)
Q Consensus 238 ~~~e~~-~l~~L~~~-~-i~i~~~~~~~~~~~~i~~~l~~ 274 (564)
.+.+.. ++..+.+. + +.+..+. ......+...+..
T Consensus 354 ~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~ 391 (395)
T 3pey_A 354 HDKNSFNILSAIQKYFGDIEMTRVP--TDDWDEVEKIVKK 391 (395)
T ss_dssp CSHHHHHHHHHHHHHTTSCCCEECC--SSCHHHHHHHHHH
T ss_pred echHHHHHHHHHHHHhCCceeecCC--hHHHHHHHHHHHH
Confidence 976655 77777765 3 4444433 3334444444443
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=344.09 Aligned_cols=247 Identities=28% Similarity=0.461 Sum_probs=81.2
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCc-ccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHh
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld-~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
.+++|+|||||+|++++.+...+++.++++|||||||++++ ++|...+..++..++..+|+++||||++..+..++..+
T Consensus 209 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 288 (479)
T 3fmp_B 209 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (479)
T ss_dssp CCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHH
T ss_pred CCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHH
Confidence 35789999999999999877778889999999999999987 68999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccccCCccceeEEEEcCc-ccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc
Q 008461 86 LKDPQYLSVHEESVTATPNRLQQTAMIVPL-EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 164 (564)
Q Consensus 86 l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~-~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH 164 (564)
+.+|..+.+.... .++..+.+.++.++. ..+...|..++......++||||+|+..++.++..|... ++.+..+|
T Consensus 289 ~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~--~~~v~~lh 364 (479)
T 3fmp_B 289 VPDPNVIKLKREE--ETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE--GHQVALLS 364 (479)
T ss_dssp SSSEEEEEEC----------------------------------------------------------------------
T ss_pred cCCCeEEeccccc--cCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC--CccEEEec
Confidence 9998887665432 345667777777764 578888888888777889999999999999999999875 88899999
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC------CHhhHHHHhcccccCCCCceEEEEe
Q 008461 165 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE------DVASYIHRVGRTARYNSGGRSVLFL 237 (564)
Q Consensus 165 g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~------s~~~YiqRiGRtgR~g~~G~~il~l 237 (564)
|+|++.+|..+++.|++ ...|||||+++++|||| |+|++||+||+|. +...|+||+|||||.|+.|.+++|+
T Consensus 365 ~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDi-p~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~ 443 (479)
T 3fmp_B 365 GEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDV-EQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 443 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEccccccCCcc-ccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999 99999999999999999 9999999999994 6789999999999999999999999
Q ss_pred Ccch-HHHHHHHHHc-CCCcccc
Q 008461 238 TPTE-MKMLEKLREA-KIPIHFT 258 (564)
Q Consensus 238 ~~~e-~~~l~~L~~~-~i~i~~~ 258 (564)
++.+ ..+++.+.+. +..+..+
T Consensus 444 ~~~~~~~~~~~i~~~~~~~~~~l 466 (479)
T 3fmp_B 444 DSKHSMNILNRIQEHFNKKIERL 466 (479)
T ss_dssp -----------------------
T ss_pred cCcchHHHHHHHHHHhCCCceEC
Confidence 9876 4477777664 4444443
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-35 Score=308.20 Aligned_cols=242 Identities=29% Similarity=0.503 Sum_probs=217.7
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+++|+|+||++|+.++... .+.+.++++||+||||++.+++|...+..++..+++..|++++|||++..+..+...++
T Consensus 122 ~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 200 (367)
T 1hv8_A 122 KNANIVVGTPGRILDHINRG-TLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYM 200 (367)
T ss_dssp HTCSEEEECHHHHHHHHHTT-CSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHC
T ss_pred CCCCEEEecHHHHHHHHHcC-CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHc
Confidence 36899999999999988765 56678999999999999999999999999999999999999999999999988888888
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
.++.++... ....+.+.++.+....++..+..++. ..+.++||||+|.+.++.+++.|... ++.+..+||+
T Consensus 201 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~ 271 (367)
T 1hv8_A 201 GDYSFIKAK------INANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDI--GFKAGAIHGD 271 (367)
T ss_dssp CSEEEEECC------SSSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred CCCeEEEec------CCCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhc--CCCeEEeeCC
Confidence 877655432 23467788888899999999999887 44789999999999999999999985 8899999999
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHH
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l 245 (564)
|++.+|..+++.|++ ...|||||+++++|+|+ |++++||++++|.++.+|+||+||+||.|+.|.+++++++.+...+
T Consensus 272 ~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~-~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 350 (367)
T 1hv8_A 272 LSQSQREKVIRLFKQKKIRILIATDVMSRGIDV-NDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKL 350 (367)
T ss_dssp SCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCC-SCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECChhhcCCCc-ccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHH
Confidence 999999999999999 99999999999999999 8999999999999999999999999999999999999999999988
Q ss_pred HHHHHc-CCCccccc
Q 008461 246 EKLREA-KIPIHFTK 259 (564)
Q Consensus 246 ~~L~~~-~i~i~~~~ 259 (564)
..+.+. +..++.+.
T Consensus 351 ~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 351 RYIERAMKLKIKKLK 365 (367)
T ss_dssp HHHHHHHTCCCCCBC
T ss_pred HHHHHHhCCCCceec
Confidence 888776 66666554
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2e-36 Score=317.58 Aligned_cols=247 Identities=26% Similarity=0.468 Sum_probs=78.9
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhcC
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK 87 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l~ 87 (564)
+++|+||||++|++++... .+.+.++++||+||||++++++|...+..++..+++..|++++|||+++.+..+...++.
T Consensus 138 ~~~i~v~T~~~l~~~~~~~-~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 216 (394)
T 1fuu_A 138 DAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMR 216 (394)
T ss_dssp HCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCC
T ss_pred CCCEEEECHHHHHHHHHhC-CcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcC
Confidence 5789999999999988765 566789999999999999999999999999999999999999999999999998888888
Q ss_pred CCCcccccccccccCCccceeEEEEcCccc-HHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 88 DPQYLSVHEESVTATPNRLQQTAMIVPLEQ-KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 88 ~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~-Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
+|..+.+.... ..+..+.+.+..++... +...+..++......++||||+|++.++.+++.|... ++.+..+||+
T Consensus 217 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~ 292 (394)
T 1fuu_A 217 NPVRILVKKDE--LTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSD 292 (394)
T ss_dssp SCEEEEECC-----------------------------------------------------------------------
T ss_pred CCeEEEecCcc--ccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc--CCeEEEeeCC
Confidence 88776554332 33455566666555443 7788888887777789999999999999999999874 8899999999
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHH
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 245 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l 245 (564)
|++.+|..+++.|++ ...|||||+++++|+|+ |++++||+|++|.++..|+||+||+||.|+.|.|++|+++.+...+
T Consensus 293 ~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi-~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~ 371 (394)
T 1fuu_A 293 LPQQERDTIMKEFRSGSSRILISTDLLARGIDV-QQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAM 371 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHCCCCcEEEECChhhcCCCc-ccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHH
Confidence 999999999999999 99999999999999999 9999999999999999999999999999999999999999998888
Q ss_pred HHHHHc-CCCcccccc
Q 008461 246 EKLREA-KIPIHFTKA 260 (564)
Q Consensus 246 ~~L~~~-~i~i~~~~~ 260 (564)
..+.+. +.+++.++.
T Consensus 372 ~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 372 RELEKFYSTQIEELPS 387 (394)
T ss_dssp ----------------
T ss_pred HHHHHHhCCcccccCc
Confidence 888764 555555443
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.5e-34 Score=292.37 Aligned_cols=229 Identities=28% Similarity=0.461 Sum_probs=197.4
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHh
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
+..++|+|+||++|+.++... .+.+.++++||+||||++.+++|...+..++..++...+++++|||++..+......+
T Consensus 103 ~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~ 181 (337)
T 2z0m_A 103 VRNADIVVATPGRLLDLWSKG-VIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDF 181 (337)
T ss_dssp HTTCSEEEECHHHHHHHHHTT-SCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred cCCCCEEEECHHHHHHHHHcC-CcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHh
Confidence 346899999999999888764 5567899999999999999999999999999999999999999999999999888888
Q ss_pred cCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccC
Q 008461 86 LKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 165 (564)
Q Consensus 86 l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg 165 (564)
+.++..+... ..+..+.+.++.++...+ .....+....+.++||||+|.+.++.+++.|. .+..+||
T Consensus 182 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~------~~~~~~~ 248 (337)
T 2z0m_A 182 ITNYEEIEAC-----IGLANVEHKFVHVKDDWR--SKVQALRENKDKGVIVFVRTRNRVAKLVRLFD------NAIELRG 248 (337)
T ss_dssp SCSCEEEECS-----GGGGGEEEEEEECSSSSH--HHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT------TEEEECT
T ss_pred cCCceeeecc-----cccCCceEEEEEeChHHH--HHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh------hhhhhcC
Confidence 8877655322 233456666666665443 23366667778999999999999999988775 4789999
Q ss_pred CCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHH
Q 008461 166 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 244 (564)
Q Consensus 166 ~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~ 244 (564)
+|++.+|..+++.|++ ...|||||+++++|+|+ |++++||+|++|.++..|+||+||+||.|+.|.+++|+. .+..+
T Consensus 249 ~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~-~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~ 326 (337)
T 2z0m_A 249 DLPQSVRNRNIDAFREGEYDMLITTDVASRGLDI-PLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWL 326 (337)
T ss_dssp TSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCC-CCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHH
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCc-cCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHH
Confidence 9999999999999999 99999999999999999 999999999999999999999999999999999999999 77777
Q ss_pred HHHHHH
Q 008461 245 LEKLRE 250 (564)
Q Consensus 245 l~~L~~ 250 (564)
++.+.+
T Consensus 327 ~~~i~~ 332 (337)
T 2z0m_A 327 EKEVKK 332 (337)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 777644
No 15
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.1e-33 Score=306.11 Aligned_cols=233 Identities=20% Similarity=0.329 Sum_probs=191.3
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCccc--HHHHHH---HHHHhCCCCCcEEEEeccCChhHHH-
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG--FKKALN---AIVSQLPKHRQTFLFSATQTKSVQD- 80 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~g--f~~~l~---~Il~~lp~~~Q~llfSATl~~~v~~- 80 (564)
+.++|+|+||++|+...... .+...++.+|||||||++++|| |+..+. .+...+| +.+++++|||+++.+..
T Consensus 114 ~~~~ilv~Tpe~l~~~~~~~-~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~ 191 (523)
T 1oyw_A 114 GQIRLLYIAPERLMLDNFLE-HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQD 191 (523)
T ss_dssp TCCSEEEECHHHHTSTTHHH-HHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHH
T ss_pred CCCCEEEECHHHHhChHHHH-HHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHH
Confidence 56899999999995321111 1334789999999999999998 655544 4456665 68999999999998765
Q ss_pred HHH-HhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCC
Q 008461 81 LAR-LSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIP 159 (564)
Q Consensus 81 l~~-~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~ 159 (564)
+.. +.+.+|..+... ....+ ..|.+.+...++..|..++..+.+.++||||+|++.++.+++.|... |+.
T Consensus 192 i~~~l~~~~~~~~~~~-----~~r~~--l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~--g~~ 262 (523)
T 1oyw_A 192 IVRLLGLNDPLIQISS-----FDRPN--IRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK--GIS 262 (523)
T ss_dssp HHHHHTCCSCEEEECC-----CCCTT--EEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT--TCC
T ss_pred HHHHhCCCCCeEEeCC-----CCCCc--eEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC--CCC
Confidence 333 334555433211 11122 34555566778899999999888889999999999999999999985 899
Q ss_pred eeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeC
Q 008461 160 LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 238 (564)
Q Consensus 160 v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~ 238 (564)
+..+||+|++.+|..+++.|++ ...|||||+++++|||+ |+|++||+|++|.+++.|+||+||+||.|..|.+++|++
T Consensus 263 ~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~-p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~ 341 (523)
T 1oyw_A 263 AAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK-PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYD 341 (523)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCC-TTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEEC
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCc-cCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeC
Confidence 9999999999999999999999 99999999999999999 899999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHc
Q 008461 239 PTEMKMLEKLREA 251 (564)
Q Consensus 239 ~~e~~~l~~L~~~ 251 (564)
+.+...++.+...
T Consensus 342 ~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 342 PADMAWLRRCLEE 354 (523)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999888877664
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=7.9e-33 Score=309.29 Aligned_cols=237 Identities=16% Similarity=0.244 Sum_probs=190.3
Q ss_pred cCCCcEEEEcHHHHH------HHHhcCCCCCCCCcceEEEeccCccCccc--HHHHHHH--HHHhCCCCCcEEEEeccCC
Q 008461 6 VNELNILVCTPGRLL------QHMDETPNFDCSQLQILILDEADRILDVG--FKKALNA--IVSQLPKHRQTFLFSATQT 75 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl------~~L~~~~~~~~~~L~~lVlDEAD~lld~g--f~~~l~~--Il~~lp~~~Q~llfSATl~ 75 (564)
.+.++|+|+||++|. +++.. .+.+.++.+|||||||++++|| |+..+.. ++....++.|+++||||++
T Consensus 134 ~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~ 211 (591)
T 2v1x_A 134 NSELKLIYVTPEKIAKSKMFMSRLEK--AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATAT 211 (591)
T ss_dssp TCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCC
T ss_pred cCCCCEEEEChhHhhccHHHHHHHHh--hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 357999999999874 33332 2345789999999999999998 7766554 3444445799999999999
Q ss_pred hhHHHHHHHhcCCCCcccccccccccCCccceeEEEEcC--cccHHHHHHHHHHHc-CCCcEEEEeCChHHHHHHHHHHH
Q 008461 76 KSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP--LEQKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFK 152 (564)
Q Consensus 76 ~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~--~~~Kl~~L~~~L~~~-~~~k~IVF~~t~k~v~~l~e~L~ 152 (564)
+.+...+...+..+..+.+... ....++.+.+...+ ...++..|..++... .+.++||||+|++.++.+++.|.
T Consensus 212 ~~v~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~ 288 (591)
T 2v1x_A 212 NHVLTDAQKILCIEKCFTFTAS---FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQ 288 (591)
T ss_dssp HHHHHHHHHHTTCCSCEEEECC---CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcEEEecC---CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHH
Confidence 9988877666665543333221 11233333332222 235667788888643 57899999999999999999999
Q ss_pred hhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCc
Q 008461 153 KLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG 231 (564)
Q Consensus 153 ~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G 231 (564)
.. |+.+..+||+|++.+|..+++.|.. ...|||||+++++|||+ |+|++||+|++|.+++.|+||+|||||.|..|
T Consensus 289 ~~--g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~-p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g 365 (591)
T 2v1x_A 289 NL--GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDK-PDVRFVIHHSMSKSMENYYQESGRAGRDDMKA 365 (591)
T ss_dssp HT--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCC-SCEEEEEESSCCSSHHHHHHHHTTSCTTSSCE
T ss_pred HC--CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCc-ccccEEEEeCCCCCHHHHHHHhccCCcCCCCc
Confidence 85 8999999999999999999999999 99999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEeCcchHHHHHHHHH
Q 008461 232 RSVLFLTPTEMKMLEKLRE 250 (564)
Q Consensus 232 ~~il~l~~~e~~~l~~L~~ 250 (564)
.|++|+.+.+...+..+..
T Consensus 366 ~~i~l~~~~D~~~~~~~~~ 384 (591)
T 2v1x_A 366 DCILYYGFGDIFRISSMVV 384 (591)
T ss_dssp EEEEEECHHHHHHHHHHTT
T ss_pred eEEEEEChHHHHHHHHHHh
Confidence 9999999999887777643
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.5e-34 Score=311.20 Aligned_cols=248 Identities=27% Similarity=0.432 Sum_probs=186.9
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCc-ccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHh
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld-~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
.+++|+||||++|+.++... .+.+.++++||+||||++.+ ++|...+..++..+++..|++++|||+++.+..+...+
T Consensus 234 ~~~~Ivv~T~~~l~~~l~~~-~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~ 312 (508)
T 3fho_A 234 IDAQIVIGTPGTVMDLMKRR-QLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERF 312 (508)
T ss_dssp CCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHcC-CccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHh
Confidence 36899999999999988765 56789999999999999987 78999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccccCCccceeEEEEcC-cccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc
Q 008461 86 LKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY 164 (564)
Q Consensus 86 l~~p~~i~v~~~~~~~~p~~l~q~~~~~~-~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH 164 (564)
+.++..+.+.... ..+..+.+.+..+. ...+...+..++......++||||+++..++.++..|... ++.+.++|
T Consensus 313 ~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~--~~~v~~~h 388 (508)
T 3fho_A 313 APNANEIRLKTEE--LSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD--GHTVACLT 388 (508)
T ss_dssp STTCEEECCCCCC------CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTT--TCCCCEEC
T ss_pred cCCCeEEEecccc--CCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhC--CCcEEEEe
Confidence 9888777654433 23445566666664 5567888888888777899999999999999999999874 88999999
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCC------CCHhhHHHHhcccccCCCCceEEEEe
Q 008461 165 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSGGRSVLFL 237 (564)
Q Consensus 165 g~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P------~s~~~YiqRiGRtgR~g~~G~~il~l 237 (564)
|+|++.+|..+++.|++ ...|||||+++++|+|+ |+|++||++++| .++..|+||+||+||.|+.|.+++|+
T Consensus 389 g~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDi-p~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~ 467 (508)
T 3fho_A 389 GNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDV-SQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 467 (508)
T ss_dssp -----CTTGGGTHHHHSSSCCCCEECC-----CCC-TTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCc-cCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEE
Confidence 99999999999999999 99999999999999999 899999999999 88999999999999999999999999
Q ss_pred Ccch-HHHHHHHHHc-CCCcccccc
Q 008461 238 TPTE-MKMLEKLREA-KIPIHFTKA 260 (564)
Q Consensus 238 ~~~e-~~~l~~L~~~-~i~i~~~~~ 260 (564)
.+.+ ...++.+++. +.++..+..
T Consensus 468 ~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 468 HDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp CTTTSSSSHHHHHHHSCCCCC----
T ss_pred eChHHHHHHHHHHHHHCCCcccCCC
Confidence 8654 4467777665 556655543
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=9.7e-33 Score=293.87 Aligned_cols=219 Identities=21% Similarity=0.361 Sum_probs=175.3
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCc-----------ccHHHH-HHHHHHhCC-----------CC
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-----------VGFKKA-LNAIVSQLP-----------KH 64 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld-----------~gf~~~-l~~Il~~lp-----------~~ 64 (564)
.++|+|||||+|++++.. +.+.++++||+||||+++. +||... +..++..+| ..
T Consensus 117 ~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 193 (414)
T 3oiy_A 117 DYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKP 193 (414)
T ss_dssp CCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCC
T ss_pred CCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCC
Confidence 499999999999988874 5567999999999986553 677777 888888887 78
Q ss_pred CcEEEEecc-CChhHH-HHHHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChH
Q 008461 65 RQTFLFSAT-QTKSVQ-DLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCK 142 (564)
Q Consensus 65 ~Q~llfSAT-l~~~v~-~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k 142 (564)
+|+++|||| .|..+. .+....+. +.+ ......+..+.+.++.+ .+...|..++... +.++||||+|+.
T Consensus 194 ~~~i~~SAT~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~i~~~~~~~---~~~~~l~~~l~~~-~~~~lVF~~~~~ 263 (414)
T 3oiy_A 194 GILVVSSATAKPRGIRPLLFRDLLN----FTV--GRLVSVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEE 263 (414)
T ss_dssp CEEEESSCCSSCCSSTTHHHHHHHS----CCS--SCCCCCCCSEEEEEESS---CCHHHHHHHHHHH-CSSEEEEESSHH
T ss_pred ceEEEEecCCCcchhHHHHHHHhhc----cCc--Cccccccccchheeecc---CHHHHHHHHHHHc-CCCEEEEECCHH
Confidence 999999999 665544 23332222 111 22234456677777665 4666778888774 689999999999
Q ss_pred HHHHHHHHHHhhCCCCCee-eccCCCCHHHHHHHHHHHhc-cCCeEEE----ecccccCCCcCCC-CcEEEEcCCC--CC
Q 008461 143 QVKYVFEAFKKLRPGIPLM-CLYGRMKQDRRMAIYAQFCE-KRSVLFC----TDVASRGLDFNKA-VDWVVQVDCP--ED 213 (564)
Q Consensus 143 ~v~~l~e~L~~l~~gi~v~-~lHg~m~~~~R~~i~~~F~~-~~~VLVa----Tdv~arGLD~pp~-V~~VI~~d~P--~s 213 (564)
.++.++..|... |+.+. .+||. +|. ++.|++ ...|||| |+++++|||+ |+ |++||+||+| .+
T Consensus 264 ~~~~l~~~L~~~--~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDi-p~~v~~VI~~~~p~~~~ 334 (414)
T 3oiy_A 264 EGKELYEYLKRF--KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDL-PERIKYVIFWGTPSGPD 334 (414)
T ss_dssp HHHHHHHHHHHT--TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCC-TTTCCEEEEESCCTTTC
T ss_pred HHHHHHHHHHHc--CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCcc-ccccCEEEEECCCCCCC
Confidence 999999999985 89998 99995 444 999999 9999999 9999999999 99 9999999999 99
Q ss_pred HhhHHHHhcccccCC----CCceEEEEeCcchHHHHHHHHH
Q 008461 214 VASYIHRVGRTARYN----SGGRSVLFLTPTEMKMLEKLRE 250 (564)
Q Consensus 214 ~~~YiqRiGRtgR~g----~~G~~il~l~~~e~~~l~~L~~ 250 (564)
+.+|+||+|||||.| +.|.+++|+ .+...+..+++
T Consensus 335 ~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~ 373 (414)
T 3oiy_A 335 VYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKT 373 (414)
T ss_dssp HHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHH
T ss_pred HHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHH
Confidence 999999999999998 589999999 44445554443
No 19
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.3e-31 Score=310.88 Aligned_cols=239 Identities=17% Similarity=0.132 Sum_probs=183.3
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHH--HHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQ--DLARL 84 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~--~l~~~ 84 (564)
.+++|+|+|||+|+.++.+.. ..+.++++|||||||++++++|+..+..++..+++..|+++||||+|+... .....
T Consensus 265 ~~~~IlV~Tpe~L~~~L~~~~-~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~ 343 (1108)
T 3l9o_A 265 PDAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICK 343 (1108)
T ss_dssp CSCSEEEEEHHHHHHHHHHCS-SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHH
T ss_pred CCCCEEEeChHHHHHHHHcCc-cccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 468999999999999998763 347899999999999999999999999999999999999999999988644 34444
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCc-------------------------------------------------
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPL------------------------------------------------- 115 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~------------------------------------------------- 115 (564)
....|..+..... .|..++++++....
T Consensus 344 ~~~~~~~vi~~~~----rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 419 (1108)
T 3l9o_A 344 IHSQPCHIVYTNF----RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGG 419 (1108)
T ss_dssp HTCSCEEEEEECC----CSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC------------------------
T ss_pred hcCCCeEEEecCC----CcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccc
Confidence 4455554433221 12223333322110
Q ss_pred ------ccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCC---------------------------------
Q 008461 116 ------EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP--------------------------------- 156 (564)
Q Consensus 116 ------~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~--------------------------------- 156 (564)
..++..++..+......++||||+|++.|+.++..|.....
T Consensus 420 ~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l 499 (1108)
T 3l9o_A 420 SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHI 499 (1108)
T ss_dssp -----CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHH
Confidence 22334455555556677999999999999999988754200
Q ss_pred ----CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC--------CHhhHHHHhcc
Q 008461 157 ----GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE--------DVASYIHRVGR 223 (564)
Q Consensus 157 ----gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~--------s~~~YiqRiGR 223 (564)
...+..+||+|++..|..++..|++ ...|||||+++++|||+ |++++||+++.|. ++..|+||+||
T Consensus 500 ~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDi-P~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GR 578 (1108)
T 3l9o_A 500 LPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM-PAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGR 578 (1108)
T ss_dssp THHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC---CEEEESCSEEESSSCEEECCHHHHHHHHHH
T ss_pred HHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCC-CCceEEEecCcccCccccccCCHHHHHHhhcc
Confidence 0117899999999999999999999 99999999999999999 9999999887643 66779999999
Q ss_pred cccCC--CCceEEEEeCcch-HHHHHHHHHc
Q 008461 224 TARYN--SGGRSVLFLTPTE-MKMLEKLREA 251 (564)
Q Consensus 224 tgR~g--~~G~~il~l~~~e-~~~l~~L~~~ 251 (564)
|||.| ..|.|++++.+.. ...+..+...
T Consensus 579 AGR~G~d~~G~~ill~~~~~~~~~~~~l~~~ 609 (1108)
T 3l9o_A 579 AGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 609 (1108)
T ss_dssp SCCSSSCSSEEEEEEECCCCCHHHHHHHHHC
T ss_pred cCCCCCCCceEEEEEecCCcCHHHHHHHhcC
Confidence 99999 6899999998763 4467776654
No 20
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.97 E-value=2.2e-31 Score=302.02 Aligned_cols=232 Identities=22% Similarity=0.283 Sum_probs=178.3
Q ss_pred CCCcEEEEcHHHH-HHHHhcC-----CCCCCCCcceEEEeccCccC-ccc---------------HHHHHHHHHHhCC--
Q 008461 7 NELNILVCTPGRL-LQHMDET-----PNFDCSQLQILILDEADRIL-DVG---------------FKKALNAIVSQLP-- 62 (564)
Q Consensus 7 ~~~~ILV~TPgrL-l~~L~~~-----~~~~~~~L~~lVlDEAD~ll-d~g---------------f~~~l~~Il~~lp-- 62 (564)
.+++|+||||||| +++|..+ ..+.++.+.++||||||+|| |++ |...+..|+..+|
T Consensus 171 ~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~ 250 (844)
T 1tf5_A 171 YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAE 250 (844)
T ss_dssp HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSS
T ss_pred cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCccc
Confidence 3689999999999 5665433 23567899999999999987 774 7899999999997
Q ss_pred -------CCCcEE-----------------EEeccCChhHHHH-----HHHhc-CCCCccc-------------------
Q 008461 63 -------KHRQTF-----------------LFSATQTKSVQDL-----ARLSL-KDPQYLS------------------- 93 (564)
Q Consensus 63 -------~~~Q~l-----------------lfSATl~~~v~~l-----~~~~l-~~p~~i~------------------- 93 (564)
+.+|++ |||||.+..+..+ +..++ +++.|+.
T Consensus 251 ~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~gr 330 (844)
T 1tf5_A 251 KDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGR 330 (844)
T ss_dssp SSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTC
T ss_pred ccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCC
Confidence 478998 9999987544443 22222 2333321
Q ss_pred -----------------ccccccc---------------------------------------cCCcc-----c-eeEEE
Q 008461 94 -----------------VHEESVT---------------------------------------ATPNR-----L-QQTAM 111 (564)
Q Consensus 94 -----------------v~~~~~~---------------------------------------~~p~~-----l-~q~~~ 111 (564)
+...+.. ..|.+ . .+.++
T Consensus 331 r~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v 410 (844)
T 1tf5_A 331 RYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLI 410 (844)
T ss_dssp CCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEE
T ss_pred ccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEE
Confidence 1100000 00000 0 11245
Q ss_pred EcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEe
Q 008461 112 IVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCT 189 (564)
Q Consensus 112 ~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaT 189 (564)
.+....|+..|...+... .+.++||||+|+..++.|+..|... |+++..|||++.+.+|..+...|+ ...|+|||
T Consensus 411 ~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~--gi~~~vLhg~~~~rEr~ii~~ag~-~g~VlIAT 487 (844)
T 1tf5_A 411 YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK--GIPHQVLNAKNHEREAQIIEEAGQ-KGAVTIAT 487 (844)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT--TCCCEEECSSCHHHHHHHHTTTTS-TTCEEEEE
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC--CCCEEEeeCCccHHHHHHHHHcCC-CCeEEEeC
Confidence 566778999999888652 4689999999999999999999985 999999999998888875554443 45799999
Q ss_pred cccccCCCcCC--------CCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchH
Q 008461 190 DVASRGLDFNK--------AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 242 (564)
Q Consensus 190 dv~arGLD~pp--------~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~ 242 (564)
|+|+||+|| + ++.+||+|++|.+...|+||+|||||.|.+|.+++|+++.+.
T Consensus 488 dmAgRG~DI-~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 488 NMAGRGTDI-KLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTSSTTCCC-CCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred CccccCcCc-cccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999999 7 788999999999999999999999999999999999998764
No 21
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=8.7e-31 Score=310.62 Aligned_cols=223 Identities=19% Similarity=0.344 Sum_probs=177.3
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccC----------c-ccHHHH-HHHHHHhCC-----------C
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRIL----------D-VGFKKA-LNAIVSQLP-----------K 63 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~ll----------d-~gf~~~-l~~Il~~lp-----------~ 63 (564)
+.++|+|||||+|++++.. +.+.++++|||||||+++ + +||... +..++..+| .
T Consensus 173 g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~ 249 (1104)
T 4ddu_A 173 DDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLK 249 (1104)
T ss_dssp SCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCC
T ss_pred CCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCC
Confidence 3599999999999998874 566899999999996554 4 888888 899999888 8
Q ss_pred CCcEEEEecc-CChhHHH-HHHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCCh
Q 008461 64 HRQTFLFSAT-QTKSVQD-LARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSC 141 (564)
Q Consensus 64 ~~Q~llfSAT-l~~~v~~-l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~ 141 (564)
.+|+++|||| .|..+.. +....+. +.+. ....++.++.+.++.+ .+...|..++... +.++||||+|+
T Consensus 250 ~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~--~~~~~~~~i~~~~~~~---~k~~~L~~ll~~~-~~~~LVF~~s~ 319 (1104)
T 4ddu_A 250 PGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTE 319 (1104)
T ss_dssp CCEEEEECBSSCCCSSTTHHHHHHTC----CCCC--BCCCCCCCEEEEEESC---CCHHHHHHHHHHH-CSSEEEEESSS
T ss_pred CceEEEEcCCCCcHHHHHHHhhccee----EEec--cCCCCcCCceeEEEec---CHHHHHHHHHHhc-CCCEEEEECcH
Confidence 8999999999 6665543 2232222 2222 2234567788888766 4667778888774 59999999999
Q ss_pred HHHHHHHHHHHhhCCCCCee-eccCCCCHHHHHHHHHHHhc-cCCeEEE----ecccccCCCcCCC-CcEEEEcCCCC--
Q 008461 142 KQVKYVFEAFKKLRPGIPLM-CLYGRMKQDRRMAIYAQFCE-KRSVLFC----TDVASRGLDFNKA-VDWVVQVDCPE-- 212 (564)
Q Consensus 142 k~v~~l~e~L~~l~~gi~v~-~lHg~m~~~~R~~i~~~F~~-~~~VLVa----Tdv~arGLD~pp~-V~~VI~~d~P~-- 212 (564)
..++.++..|... |+.+. .+||. |.. ++.|++ ..+|||| |++++||||| |+ |++|||||+|.
T Consensus 320 ~~a~~l~~~L~~~--g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDi-p~~V~~VI~~d~P~~~ 390 (1104)
T 4ddu_A 320 EEGKELYEYLKRF--KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDL-PERIKYVIFWGTPSMR 390 (1104)
T ss_dssp HHHHHHHHHHHHT--TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCC-TTTCCEEEEESCCEEE
T ss_pred HHHHHHHHHHHhC--CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcC-CCCCCEEEEECCCCCC
Confidence 9999999999985 89998 99992 555 999999 9999999 9999999999 99 99999999998
Q ss_pred ----------------------------------------------------------------------CHhhHHHHhc
Q 008461 213 ----------------------------------------------------------------------DVASYIHRVG 222 (564)
Q Consensus 213 ----------------------------------------------------------------------s~~~YiqRiG 222 (564)
++.+|+||+|
T Consensus 391 ~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~G 470 (1104)
T 4ddu_A 391 FSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASG 470 (1104)
T ss_dssp EECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccC
Confidence 8889999999
Q ss_pred ccccCCCCc--eEEEEeCcchHHHHHHHHHc
Q 008461 223 RTARYNSGG--RSVLFLTPTEMKMLEKLREA 251 (564)
Q Consensus 223 RtgR~g~~G--~~il~l~~~e~~~l~~L~~~ 251 (564)
||||.|..| .++.++...+...++.|.+.
T Consensus 471 RtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~ 501 (1104)
T 4ddu_A 471 RSSRILNGVLVKGVSVIFEEDEEIFESLKTR 501 (1104)
T ss_dssp TTCCEETTEECCEEEEEECCCHHHHHHHHHH
T ss_pred chhcccCCCcccceEEEEEecHHHHHHHHHH
Confidence 999977543 34444444666666666553
No 22
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.3e-29 Score=290.98 Aligned_cols=237 Identities=19% Similarity=0.157 Sum_probs=186.1
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH---
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL--- 84 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~--- 84 (564)
.++|+|+||++|..++.+. ...+.++++|||||||++.+++++..+..++..+|...|++++|||+++... ++.+
T Consensus 168 ~~~IvV~Tpe~L~~~L~~~-~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e-~a~~l~~ 245 (1010)
T 2xgj_A 168 DAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAME-FAEWICK 245 (1010)
T ss_dssp TCSEEEEEHHHHHHHHHHT-CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHH-HHHHHHH
T ss_pred CCCEEEEcHHHHHHHHHcC-cchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHH-HHHHHHh
Confidence 6789999999999988775 4557899999999999999999999999999999999999999999998643 3332
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcC---------c----------------------------------------
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVP---------L---------------------------------------- 115 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~---------~---------------------------------------- 115 (564)
....|..+..... .|..+.++++..+ .
T Consensus 246 ~~~~~~~vi~~~~----rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~ 321 (1010)
T 2xgj_A 246 IHSQPCHIVYTNF----RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGG 321 (1010)
T ss_dssp HHTSCEEEEEECC----CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-----------------------
T ss_pred hcCCCeEEEecCC----CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccc
Confidence 2244444433221 1223444433211 0
Q ss_pred ------ccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCC---------------------------------
Q 008461 116 ------EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP--------------------------------- 156 (564)
Q Consensus 116 ------~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~--------------------------------- 156 (564)
...+..+...+......++||||+|++.|+.++..|.....
T Consensus 322 ~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l 401 (1010)
T 2xgj_A 322 SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHI 401 (1010)
T ss_dssp -------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHH
T ss_pred cccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHH
Confidence 12233455555555567999999999999999988865210
Q ss_pred ----CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEE----cCC----CCCHhhHHHHhcc
Q 008461 157 ----GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ----VDC----PEDVASYIHRVGR 223 (564)
Q Consensus 157 ----gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~----~d~----P~s~~~YiqRiGR 223 (564)
...+..+||+|++.+|..++..|++ ..+|||||+++++|||+ |++++||+ ||. |.++..|+||+||
T Consensus 402 ~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDi-P~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GR 480 (1010)
T 2xgj_A 402 LPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM-PAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGR 480 (1010)
T ss_dssp HHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTC-CBSEEEESCSEEECSSCEEECCHHHHHHHHTT
T ss_pred HHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCC-CCceEEEeCCcccCCcCCccCCHHHHhHhhhh
Confidence 0127889999999999999999999 99999999999999999 89999999 999 8999999999999
Q ss_pred cccCCC--CceEEEEeCcc-hHHHHHHHHHc
Q 008461 224 TARYNS--GGRSVLFLTPT-EMKMLEKLREA 251 (564)
Q Consensus 224 tgR~g~--~G~~il~l~~~-e~~~l~~L~~~ 251 (564)
|||.|. .|.|++|+++. +...+..+...
T Consensus 481 AGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~ 511 (1010)
T 2xgj_A 481 AGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 511 (1010)
T ss_dssp BCCTTTCSSEEEEEEECSCCCHHHHHHHHSC
T ss_pred cccCCCCCceEEEEEECCCCCHHHHHHHHhC
Confidence 999996 59999999876 55577777554
No 23
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.96 E-value=1.7e-31 Score=299.86 Aligned_cols=287 Identities=13% Similarity=0.138 Sum_probs=206.8
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCC-CCCcEEEEeccCChhHHHHHHHhc
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-KHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp-~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
+..|.++|.+.|...+... ..+.++++|||||||++ +++|...+..|+..++ +++|+++||||++..+..++.
T Consensus 254 ~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~--- 327 (618)
T 2whx_A 254 REIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ--- 327 (618)
T ss_dssp SSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---
T ss_pred CceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---
Confidence 4467788999888777765 34689999999999998 8889999999988876 689999999999877542221
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
.++..+.+... . +. .++..++..+... ..++||||+|++.++.+++.|... ++.+..+||+
T Consensus 328 ~~~~~~~v~~~----~-----------~~-~~~~~ll~~l~~~-~~~~LVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~ 388 (618)
T 2whx_A 328 SNSPIEDIERE----I-----------PE-RSWNTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRK 388 (618)
T ss_dssp CSSCEEEEECC----C-----------CS-SCCSSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTT
T ss_pred cCCceeeeccc----C-----------CH-HHHHHHHHHHHhC-CCCEEEEECChhHHHHHHHHHHHc--CCcEEEEChH
Confidence 23333322211 0 10 1112233344443 679999999999999999999985 8999999995
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEE--------------------EEcCCCCCHhhHHHHhcccc
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWV--------------------VQVDCPEDVASYIHRVGRTA 225 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~V--------------------I~~d~P~s~~~YiqRiGRtg 225 (564)
+|..+++.|++ ...||||||+++||||+ | |++| |+|++|.+.++|+||+||||
T Consensus 389 ----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi-~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaG 462 (618)
T 2whx_A 389 ----TFDTEYPKTKLTDWDFVVTTDISEMGANF-R-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIG 462 (618)
T ss_dssp ----THHHHTTHHHHSCCSEEEECGGGGTTCCC-C-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSS
T ss_pred ----HHHHHHHhhcCCCcEEEEECcHHHcCccc-C-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccC
Confidence 68889999999 99999999999999999 8 9998 88888999999999999999
Q ss_pred cCCC-CceEEEEeC---cchHHHHHHHHHcCCCccccccccccchhHH---HHHHHHHhcChhHHHHHHHHHHHHHHHHh
Q 008461 226 RYNS-GGRSVLFLT---PTEMKMLEKLREAKIPIHFTKANTKRLQPVS---GLLAALLVKYPDMQHRAQKAFITYLRSVH 298 (564)
Q Consensus 226 R~g~-~G~~il~l~---~~e~~~l~~L~~~~i~i~~~~~~~~~~~~i~---~~l~~~~~~~~~l~~~a~~af~sy~rs~~ 298 (564)
|.|. .|.+++|++ +.+..++..++.. +.+....+....+.... ......+.....+...+.++|.+|++.+.
T Consensus 463 R~g~~~G~ai~l~~~~~~~d~~~l~~le~~-i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~ll~~~~ 541 (618)
T 2whx_A 463 RNPAQEDDQYVFSGDPLKNDEDHAHWTEAK-MLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGD 541 (618)
T ss_dssp CCTTCCCEEEEECSCCCCCCTTCHHHHHHH-HHHTTCCCTTCCCCCCCGGGGGGCCCCTTTTCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCeEEEEccCCchhhHHHHHHHHhH-hccccccCCcchhhhccchhhhccccCCceeEccHHHHHHHHHHhhccC
Confidence 9975 899999998 7776677776654 22222222211111100 00011122334456678889999998644
Q ss_pred cccccccccccCCCHHHHHHhcCCCCCCc
Q 008461 299 IQKDKEVFDVTKLSIDEFSASLGLPMTPK 327 (564)
Q Consensus 299 ~~~~k~if~~~~l~l~~~A~s~GL~~~P~ 327 (564)
. .-...|.+.++++...+.+|++.++|.
T Consensus 542 ~-~~~l~~~v~~~~l~~~~~~w~~~~~~~ 569 (618)
T 2whx_A 542 L-PVWLSYKVASAGISYKDREWCFTGERN 569 (618)
T ss_dssp C-CHHHHHHHHHTTCCTTCCGGGTCCCGG
T ss_pred C-cHHHHHHHHhcCCCccceeEEecCCCc
Confidence 2 111226677777777788899999887
No 24
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.96 E-value=2e-32 Score=295.82 Aligned_cols=285 Identities=16% Similarity=0.193 Sum_probs=189.6
Q ss_pred EEEcHHHHHHHHhcC-------CCCCCCCcceEEEeccCccCcccHHHHHHHHHHhC-CCCCcEEEEeccCChhHHHHHH
Q 008461 12 LVCTPGRLLQHMDET-------PNFDCSQLQILILDEADRILDVGFKKALNAIVSQL-PKHRQTFLFSATQTKSVQDLAR 83 (564)
Q Consensus 12 LV~TPgrLl~~L~~~-------~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l-p~~~Q~llfSATl~~~v~~l~~ 83 (564)
.|+||+++++++..+ ....+.++++||+||||++ +.+|...+..+...+ +..+|+++||||+++.+..++.
T Consensus 71 ~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~ 149 (440)
T 1yks_A 71 AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPH 149 (440)
T ss_dssp CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC
T ss_pred eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh
Confidence 377776665333211 1234689999999999998 555554444444443 3579999999999876432211
Q ss_pred HhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeec
Q 008461 84 LSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL 163 (564)
Q Consensus 84 ~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~l 163 (564)
. ++ .+......++... ...++..+... +.++||||+|++.++.+++.|... ++.+..+
T Consensus 150 ~---~~---------------~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~--~~~v~~l 207 (440)
T 1yks_A 150 S---NG---------------EIEDVQTDIPSEP-WNTGHDWILAD-KRPTAWFLPSIRAANVMAASLRKA--GKSVVVL 207 (440)
T ss_dssp C---SS---------------CEEEEECCCCSSC-CSSSCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHT--TCCEEEC
T ss_pred c---CC---------------CeeEeeeccChHH-HHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHHc--CCCEEEe
Confidence 0 00 0001111111111 11223334333 689999999999999999999986 8999999
Q ss_pred cCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEE-------------------cCCCCCHhhHHHHhcc
Q 008461 164 YGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ-------------------VDCPEDVASYIHRVGR 223 (564)
Q Consensus 164 Hg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~-------------------~d~P~s~~~YiqRiGR 223 (564)
|| .+|..+++.|++ ...|||||+++++|||+ | |++||+ |++|.++.+|+||+||
T Consensus 208 hg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDi-p-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR 281 (440)
T 1yks_A 208 NR----KTFEREYPTIKQKKPDFILATDIAEMGANL-C-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGR 281 (440)
T ss_dssp CS----SSCC--------CCCSEEEESSSTTCCTTC-C-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTT
T ss_pred cc----hhHHHHHhhhcCCCceEEEECChhheeecc-C-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccc
Confidence 99 368899999999 99999999999999999 8 999996 8999999999999999
Q ss_pred cccC-CCCceEEEEe---CcchHHHHHHHHHcCCCcccccccccc---chhHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 008461 224 TARY-NSGGRSVLFL---TPTEMKMLEKLREAKIPIHFTKANTKR---LQPVSGLLAALLVKYPDMQHRAQKAFITYLRS 296 (564)
Q Consensus 224 tgR~-g~~G~~il~l---~~~e~~~l~~L~~~~i~i~~~~~~~~~---~~~i~~~l~~~~~~~~~l~~~a~~af~sy~rs 296 (564)
|||. |..|.|++|+ ++.+..++..++.. +.+....+.... .......-...+..+..+...+.++|.+|+++
T Consensus 282 ~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 360 (440)
T 1yks_A 282 IGRNPNRDGDSYYYSEPTSENNAHHVCWLEAS-MLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVRN 360 (440)
T ss_dssp SSCCTTCCCEEEEECSCCCCCCTTBHHHHHHH-HHHTTSCCGGGCCCCCSTTHHHHSSSCTTTTCCCHHHHHHHHHHHHT
T ss_pred cCCCCCCCceEEEEeccCChhhhhhhhhhhHH-hccccccccccccccccchhhccCCCCCcccccChhHHHHHHHHHHh
Confidence 9998 6899999996 67776667766553 222222221111 11111111223455667778899999999997
Q ss_pred HhcccccccccccCCCHHHHHHhcCCCCCCc
Q 008461 297 VHIQKDKEVFDVTKLSIDEFSASLGLPMTPK 327 (564)
Q Consensus 297 ~~~~~~k~if~~~~l~l~~~A~s~GL~~~P~ 327 (564)
+.... ...|++.+.++...+.+||+.++|.
T Consensus 361 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (440)
T 1yks_A 361 CDLPV-WLSWQVAKAGLKTNDRKWCFEGPEE 390 (440)
T ss_dssp TCCCH-HHHHHHHHTTCCTTCCGGGSCSCGG
T ss_pred cCCch-hhhhhhhhcCCceeeeeEEecCCCc
Confidence 54322 2357888888888889999999997
No 25
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.96 E-value=2.7e-29 Score=275.37 Aligned_cols=125 Identities=21% Similarity=0.290 Sum_probs=68.6
Q ss_pred ccHHHHHHHHHHH----cCCCcEEEEeCChHHHHHHHHHHHhhC----------CCCCeeeccCCCCHHHHHHHHHHHhc
Q 008461 116 EQKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKLR----------PGIPLMCLYGRMKQDRRMAIYAQFCE 181 (564)
Q Consensus 116 ~~Kl~~L~~~L~~----~~~~k~IVF~~t~k~v~~l~e~L~~l~----------~gi~v~~lHg~m~~~~R~~i~~~F~~ 181 (564)
..|+..|..+|.. ..+.++||||+++..++.++..|.... .|.....+||+|++.+|..+++.|++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 4466777777754 347899999999999999999997641 24555667888999999999999998
Q ss_pred --cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 182 --KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 182 --~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
...|||||+++++|||+ |+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+..
T Consensus 451 ~g~~~vLvaT~~~~~GiDi-p~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 451 SKDNRLLIATSVADEGIDI-VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp ---CCEEEEEC------------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred cCceEEEEEcCchhcCCCc-hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 67999999999999999 999999999999999999999999 999 889999999987664
No 26
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.3e-28 Score=262.30 Aligned_cols=231 Identities=21% Similarity=0.252 Sum_probs=173.6
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHH---HHH
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDL---ARL 84 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l---~~~ 84 (564)
+++|+|+||++|...+... .+.+.++++||+||||++........+...+...++..+++++|||+......+ ...
T Consensus 101 ~~~ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~~ 179 (494)
T 1wp9_A 101 RAKVIVATPQTIENDLLAG-RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINN 179 (494)
T ss_dssp HCSEEEECHHHHHHHHHTT-SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHH
T ss_pred CCCEEEecHHHHHHHHhcC-CcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCCCCcHHHHHHHHh
Confidence 5789999999999888764 567889999999999999876555556666666667899999999998544433 322
Q ss_pred hcCCCCccc-cccccc--ccCCccceeE----------------------------------------------------
Q 008461 85 SLKDPQYLS-VHEESV--TATPNRLQQT---------------------------------------------------- 109 (564)
Q Consensus 85 ~l~~p~~i~-v~~~~~--~~~p~~l~q~---------------------------------------------------- 109 (564)
....+..+. ...... ...+......
T Consensus 180 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (494)
T 1wp9_A 180 LGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIIN 259 (494)
T ss_dssp TTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHH
T ss_pred cChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHH
Confidence 211100000 000000 0000000000
Q ss_pred ----------------------------------------EE------------------------------------Ec
Q 008461 110 ----------------------------------------AM------------------------------------IV 113 (564)
Q Consensus 110 ----------------------------------------~~------------------------------------~~ 113 (564)
|+ ..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (494)
T 1wp9_A 260 EEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIG 339 (494)
T ss_dssp HHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred HHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcC
Confidence 00 00
Q ss_pred CcccHHHHHHHHHHH----cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccC--------CCCHHHHHHHHHHHhc
Q 008461 114 PLEQKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG--------RMKQDRRMAIYAQFCE 181 (564)
Q Consensus 114 ~~~~Kl~~L~~~L~~----~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg--------~m~~~~R~~i~~~F~~ 181 (564)
....|+..|..+|.. ..+.++||||++...++.+++.|... |+.+..+|| +|++.+|..+++.|++
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~ 417 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD--GIKAKRFVGQASKENDRGLSQREQKLILDEFAR 417 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT--TCCEEEECCSSCC-------CCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc--CCCcEEEeccccccccccCCHHHHHHHHHHHhc
Confidence 234577778888876 45889999999999999999999986 899999999 9999999999999999
Q ss_pred -cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 182 -KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 182 -~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
...|||||+++++|||+ |++++||+||+|+++..|+||+||+||.|. |.++.|+++...+
T Consensus 418 ~~~~vLv~T~~~~~Gldl-~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 418 GEFNVLVATSVGEEGLDV-PEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp TSCSEEEECGGGGGGGGS-TTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred CCceEEEECCccccCCCc-hhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 89999999999999999 899999999999999999999999999998 9999999987554
No 27
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.96 E-value=4.5e-29 Score=272.90 Aligned_cols=129 Identities=19% Similarity=0.272 Sum_probs=90.2
Q ss_pred ccHHHHHHHHHHH----cCCCcEEEEeCChHHHHHHHHHHHhhC----------CCCCeeeccCCCCHHHHHHHHHHHhc
Q 008461 116 EQKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKLR----------PGIPLMCLYGRMKQDRRMAIYAQFCE 181 (564)
Q Consensus 116 ~~Kl~~L~~~L~~----~~~~k~IVF~~t~k~v~~l~e~L~~l~----------~gi~v~~lHg~m~~~~R~~i~~~F~~ 181 (564)
..|+..|..+|.. ....++||||+++..++.++..|.... .|.....+||+|++.+|..+++.|++
T Consensus 370 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 449 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRA 449 (555)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhc
Confidence 3466777777755 346899999999999999999998741 13445566779999999999999997
Q ss_pred --cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHH
Q 008461 182 --KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEK 247 (564)
Q Consensus 182 --~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~ 247 (564)
...|||||+++++|||+ |+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+......
T Consensus 450 ~g~~~vLvaT~~~~~GlDl-p~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~ 514 (555)
T 3tbk_A 450 SGDNNILIATSVADEGIDI-AECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEK 514 (555)
T ss_dssp --CCSEEEECCCTTCCEET-TSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHH
T ss_pred CCCeeEEEEcchhhcCCcc-ccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHH
Confidence 67999999999999999 899999999999999999999999 998 8999999999987664333
No 28
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.96 E-value=1.5e-29 Score=286.43 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=114.2
Q ss_pred EEEcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEE
Q 008461 110 AMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLF 187 (564)
Q Consensus 110 ~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLV 187 (564)
++.+....|+..|...+... .+.++||||+|+..++.++..|... |+++.+|||++.+.+|..+...|+.. .|+|
T Consensus 418 ~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~--gi~~~vLnak~~~rEa~iia~agr~G-~VtI 494 (853)
T 2fsf_A 418 LVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKA--GIKHNVLNAKFHANEAAIVAQAGYPA-AVTI 494 (853)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHT--TCCCEECCTTCHHHHHHHHHTTTSTT-CEEE
T ss_pred EEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHC--CCCEEEecCChhHHHHHHHHhcCCCC-eEEE
Confidence 45567788999999988653 4689999999999999999999985 99999999999888887777777653 6999
Q ss_pred EecccccCCCcCCC--------------------------------C-----cEEEEcCCCCCHhhHHHHhcccccCCCC
Q 008461 188 CTDVASRGLDFNKA--------------------------------V-----DWVVQVDCPEDVASYIHRVGRTARYNSG 230 (564)
Q Consensus 188 aTdv~arGLD~pp~--------------------------------V-----~~VI~~d~P~s~~~YiqRiGRtgR~g~~ 230 (564)
|||+|+||+|| +. | .+||+|+.|.+...|+||+|||||.|.+
T Consensus 495 ATnmAgRGtDI-~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~ 573 (853)
T 2fsf_A 495 ATNMAGRGTDI-VLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDA 573 (853)
T ss_dssp EESCCSSCSCC-CTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred ecccccCCcCc-cCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCC
Confidence 99999999999 65 3 5999999999999999999999999999
Q ss_pred ceEEEEeCcchH
Q 008461 231 GRSVLFLTPTEM 242 (564)
Q Consensus 231 G~~il~l~~~e~ 242 (564)
|.+++|++..+.
T Consensus 574 G~s~~fls~eD~ 585 (853)
T 2fsf_A 574 GSSRFYLSMEDA 585 (853)
T ss_dssp EEEEEEEETTSG
T ss_pred eeEEEEecccHH
Confidence 999999998764
No 29
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.96 E-value=4e-30 Score=278.51 Aligned_cols=287 Identities=15% Similarity=0.131 Sum_probs=194.0
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHh-CCCCCcEEEEeccCChhHHHHHHHh
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ-LPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~-lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
.+..|.++|||.|..++.+. ..+.++++|||||||++ +.++...+..+... .+++.|+++||||++..+.. ..
T Consensus 86 ~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~---~~ 159 (451)
T 2jlq_A 86 GREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDP---FP 159 (451)
T ss_dssp SSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS---SC
T ss_pred CCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccchh---hh
Confidence 35679999999999888765 44689999999999977 66655555444433 35589999999999875432 12
Q ss_pred cCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccC
Q 008461 86 LKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 165 (564)
Q Consensus 86 l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg 165 (564)
..++..+.+.. ..|.. .| ..+..++... .+++||||+|++.++.+++.|... |+.+..+||
T Consensus 160 ~~~~~~~~~~~----~~p~~---~~---------~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~--g~~~~~lh~ 220 (451)
T 2jlq_A 160 QSNSPIEDIER----EIPER---SW---------NTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSR 220 (451)
T ss_dssp CCSSCEEEEEC----CCCSS---CC---------SSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECT
T ss_pred cCCCceEecCc----cCCch---hh---------HHHHHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHc--CCeEEECCH
Confidence 23333332210 11110 01 1123344444 679999999999999999999875 899999999
Q ss_pred CCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcC--------------------CCCCHhhHHHHhccc
Q 008461 166 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVD--------------------CPEDVASYIHRVGRT 224 (564)
Q Consensus 166 ~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d--------------------~P~s~~~YiqRiGRt 224 (564)
++. ..+++.|++ ...|||||+++++|||+ |+ ++||+|| +|.+..+|+||+|||
T Consensus 221 ~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDi-p~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRa 294 (451)
T 2jlq_A 221 KTF----DTEYPKTKLTDWDFVVTTDISEMGANF-RA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRI 294 (451)
T ss_dssp TTH----HHHGGGGGSSCCSEEEECGGGGSSCCC-CC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTS
T ss_pred HHH----HHHHHhhccCCceEEEECCHHHhCcCC-CC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhcccc
Confidence 865 478999999 99999999999999999 88 9999999 999999999999999
Q ss_pred ccCCC-CceEEEEeCcchHH--HH-----HHHHHcCCCccccccccccchhHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 008461 225 ARYNS-GGRSVLFLTPTEMK--ML-----EKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRS 296 (564)
Q Consensus 225 gR~g~-~G~~il~l~~~e~~--~l-----~~L~~~~i~i~~~~~~~~~~~~i~~~l~~~~~~~~~l~~~a~~af~sy~rs 296 (564)
||.|. .|.+++|+...+.. .+ ..+...++++..-.+..- .. ..............+...++++|.+|++.
T Consensus 295 GR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~e~~~~~~~~~~~~l~~~~~~~~~~~l~~ 372 (451)
T 2jlq_A 295 GRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTL-FG-PEREKTQAIDGEFRLRGEQRKTFVELMRR 372 (451)
T ss_dssp SCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCCCCCC-CG-GGGGGCCCCTTTTCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHhHHhh-cC-CchhhccCCCcccccCchhHHHHHHHHhh
Confidence 99998 88998887533211 11 222222322211000000 00 00000011112233456778899999987
Q ss_pred HhcccccccccccCCCHHHHHHhcCCCCCCc
Q 008461 297 VHIQKDKEVFDVTKLSIDEFSASLGLPMTPK 327 (564)
Q Consensus 297 ~~~~~~k~if~~~~l~l~~~A~s~GL~~~P~ 327 (564)
+-.+. ...|.+...++.-.+.+||+.++|.
T Consensus 373 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (451)
T 2jlq_A 373 GDLPV-WLSYKVASAGISYKDREWCFTGERN 402 (451)
T ss_dssp SCCCH-HHHHHHHHTTCCTTCCGGGTCSCGG
T ss_pred cCCcH-HHhHHHHHcCCCcccchhhhcCCCC
Confidence 64433 4567777777766778888888873
No 30
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=8.5e-30 Score=301.58 Aligned_cols=221 Identities=21% Similarity=0.369 Sum_probs=174.3
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhC-----------CCCCcEEEEeccCCh
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL-----------PKHRQTFLFSATQTK 76 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l-----------p~~~Q~llfSATl~~ 76 (564)
+++|+|||||+|++++.+ ++++++|||||||+++++ ...+..++..+ +..+|+++||||++.
T Consensus 155 ~~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~~--~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~ 227 (1054)
T 1gku_B 155 NFKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILKA--SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATA 227 (1054)
T ss_dssp GCSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHTS--THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCS
T ss_pred CCCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhhc--cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCC
Confidence 389999999999987764 568999999999999984 56777787776 457899999999998
Q ss_pred hHHHHHHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCC
Q 008461 77 SVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP 156 (564)
Q Consensus 77 ~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~ 156 (564)
. ..++..++.++..+.+... ......+.+.++ ...+...|..++... +.++||||+|++.|+.+++.|...
T Consensus 228 ~-~~~~~~~~~~~~~i~v~~~--~~~~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-- 298 (1054)
T 1gku_B 228 K-KGKKAELFRQLLNFDIGSS--RITVRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-- 298 (1054)
T ss_dssp C-CCTTHHHHHHHHCCCCSCC--EECCCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS--
T ss_pred c-hhHHHHHhhcceEEEccCc--ccCcCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc--
Confidence 7 5444444444444433322 234456667666 355677777888765 689999999999999999999864
Q ss_pred CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEE----ecccccCCCcCCCC-cEEEEcCCC-------------------
Q 008461 157 GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC----TDVASRGLDFNKAV-DWVVQVDCP------------------- 211 (564)
Q Consensus 157 gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVa----Tdv~arGLD~pp~V-~~VI~~d~P------------------- 211 (564)
+.+..+||+|. .+++.|++ ...|||| |++++||||+ |+| ++||+||+|
T Consensus 299 -~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDi-p~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~ 371 (1054)
T 1gku_B 299 -FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDL-PERIRFAVFVGCPSFRVTIEDIDSLSPQMVKL 371 (1054)
T ss_dssp -SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCC-TTTCCEEEEESCCEEEEECSCGGGSCHHHHHH
T ss_pred -cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEecccc-CCcccEEEEeCCCcccccccccccChHHHHHH
Confidence 88999999984 78899999 9999999 9999999999 996 999999999
Q ss_pred ----------------------------------------------------CCHhhHHHHhcccccCCCCc--eEEEEe
Q 008461 212 ----------------------------------------------------EDVASYIHRVGRTARYNSGG--RSVLFL 237 (564)
Q Consensus 212 ----------------------------------------------------~s~~~YiqRiGRtgR~g~~G--~~il~l 237 (564)
.++.+|+||+|||||.|..| .+++|+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~ 451 (1054)
T 1gku_B 372 LAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFL 451 (1054)
T ss_dssp HHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEE
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEE
Confidence 79999999999999998876 488888
Q ss_pred CcchHHHHHHHHHc
Q 008461 238 TPTEMKMLEKLREA 251 (564)
Q Consensus 238 ~~~e~~~l~~L~~~ 251 (564)
...+..++..|.+.
T Consensus 452 ~~~d~~~~~~l~~~ 465 (1054)
T 1gku_B 452 LEDDSELLSAFIER 465 (1054)
T ss_dssp ECSCHHHHHHHHHH
T ss_pred EecCHHHHHHHHHH
Confidence 88888777776654
No 31
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.96 E-value=6.5e-28 Score=274.87 Aligned_cols=223 Identities=17% Similarity=0.196 Sum_probs=171.2
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
++++|+|||||+|..++...+. .++++++||+||||.+.+.+++..+..++..++ ..|++++|||+++ ...++.++.
T Consensus 120 ~~~~Iiv~Tpe~l~~~~~~~~~-~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~ 196 (715)
T 2va8_A 120 KNYDIIITTYEKLDSLWRHRPE-WLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLG 196 (715)
T ss_dssp GGCSEEEECHHHHHHHHHHCCG-GGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHT
T ss_pred CCCCEEEEcHHHHHHHHhCChh-HhhccCEEEEechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhC
Confidence 4789999999999998877532 368999999999999998889999999998887 8999999999986 356665543
Q ss_pred CCCCcccccccccccCCccceeEE------------EEcC--------cccHHHHHHHHHHHcCCCcEEEEeCChHHHHH
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTA------------MIVP--------LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKY 146 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~------------~~~~--------~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~ 146 (564)
..+ +... ..|..+...+ ...+ .......+...+. .++++||||+|++.++.
T Consensus 197 ~~~--~~~~-----~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~ 267 (715)
T 2va8_A 197 AEP--VATN-----WRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAES 267 (715)
T ss_dssp CEE--EECC-----CCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHH
T ss_pred CCc--cCCC-----CCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHH
Confidence 211 1110 0011111111 1111 1334455555543 36899999999999999
Q ss_pred HHHHHHhhCCC----------------------------------CCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecc
Q 008461 147 VFEAFKKLRPG----------------------------------IPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 191 (564)
Q Consensus 147 l~e~L~~l~~g----------------------------------i~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv 191 (564)
++..|...... ..+.++||+|++.+|..+++.|++ ..+|||||++
T Consensus 268 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~ 347 (715)
T 2va8_A 268 TALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPT 347 (715)
T ss_dssp HHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGG
T ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChH
Confidence 99999875322 358999999999999999999999 9999999999
Q ss_pred cccCCCcCCCCcEEEE----cC-------CCCCHhhHHHHhcccccCC--CCceEEEEeCcchH
Q 008461 192 ASRGLDFNKAVDWVVQ----VD-------CPEDVASYIHRVGRTARYN--SGGRSVLFLTPTEM 242 (564)
Q Consensus 192 ~arGLD~pp~V~~VI~----~d-------~P~s~~~YiqRiGRtgR~g--~~G~~il~l~~~e~ 242 (564)
+++|||+ |++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+.
T Consensus 348 l~~Gidi-p~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 348 LAAGVNL-PARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp GGGSSCC-CBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HhcccCC-CceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 9999999 99999999 99 8999999999999999988 47999999988763
No 32
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=4.5e-28 Score=226.67 Aligned_cols=154 Identities=27% Similarity=0.463 Sum_probs=143.9
Q ss_pred cCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHh
Q 008461 101 ATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 180 (564)
Q Consensus 101 ~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~ 180 (564)
.++.++.|.|+.++...|+..|..++....+.++||||+|+..++.++..|... |+.+..+||+|++.+|..+++.|+
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHH
Confidence 456779999999999999999999999888899999999999999999999885 899999999999999999999999
Q ss_pred c-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHHHHc-CCCccc
Q 008461 181 E-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHF 257 (564)
Q Consensus 181 ~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~-~i~i~~ 257 (564)
+ ...|||||+++++|+|+ |++++||+||+|+++.+|+||+||+||.|+.|.+++|+++.+..+++.+.+. +.++..
T Consensus 83 ~g~~~vlv~T~~~~~Gld~-~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDI-ENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp TTSCSEEEECGGGTTTCCC-SCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEE
T ss_pred cCCCeEEEECChhhcCCch-hcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCc
Confidence 9 99999999999999999 8999999999999999999999999999999999999999999999888775 655544
No 33
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.96 E-value=1.1e-28 Score=279.50 Aligned_cols=131 Identities=18% Similarity=0.241 Sum_probs=83.0
Q ss_pred cccHHHHHHHHHHHc----CCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeec--------cCCCCHHHHHHHHHHHh
Q 008461 115 LEQKLDMLWSFIKAH----LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCL--------YGRMKQDRRMAIYAQFC 180 (564)
Q Consensus 115 ~~~Kl~~L~~~L~~~----~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~l--------Hg~m~~~~R~~i~~~F~ 180 (564)
...|+..|..++... .+.++||||+++..++.+++.|.... +++.+..+ ||+|++.+|..+++.|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 346888888888776 56899999999999999999998851 12778888 55999999999999998
Q ss_pred c--cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHH
Q 008461 181 E--KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 248 (564)
Q Consensus 181 ~--~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L 248 (564)
+ ...|||||+++++|||+ |+|++||+||+|.++..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 458 ~~g~~~vLVaT~v~~~GiDi-p~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 458 ASGDHNILIATSVADEGIDI-AQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ---CCSCSEEEESSCCC----CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred hcCCccEEEEechhhcCCcC-ccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 5 78999999999999999 999999999999999999999999 998 78999999998776544333
No 34
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.96 E-value=3.5e-28 Score=277.49 Aligned_cols=231 Identities=15% Similarity=0.195 Sum_probs=179.5
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHh
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
.++++|+|||||+|..++...+ ..++++++||+||||++.++++...+..++..++...|++++|||+++ ...++.+.
T Consensus 112 ~~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l 189 (720)
T 2zj8_A 112 LGKYDIIIATAEKFDSLLRHGS-SWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL 189 (720)
T ss_dssp GGGCSEEEECHHHHHHHHHHTC-TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT
T ss_pred cCCCCEEEECHHHHHHHHHcCh-hhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh
Confidence 4578999999999998887753 336899999999999999999999999999998878999999999987 35566544
Q ss_pred cCCCCcccccccccccCCccceeEEE------EcC-----cccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhh
Q 008461 86 LKDPQYLSVHEESVTATPNRLQQTAM------IVP-----LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKL 154 (564)
Q Consensus 86 l~~p~~i~v~~~~~~~~p~~l~q~~~------~~~-----~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l 154 (564)
...+ +... ..|..+...+. ... ...+...+...+.. +.++||||+|++.++.++..|...
T Consensus 190 ~~~~--~~~~-----~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~LVF~~sr~~~~~~a~~L~~~ 260 (720)
T 2zj8_A 190 NAEL--IVSD-----WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRK--KKGALIFVNMRRKAERVALELSKK 260 (720)
T ss_dssp TEEE--EECC-----CCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCcc--cCCC-----CCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhC--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 2211 1110 01112222211 111 23445556655543 589999999999999999988753
Q ss_pred CC-------------------------------CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCC
Q 008461 155 RP-------------------------------GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAV 202 (564)
Q Consensus 155 ~~-------------------------------gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V 202 (564)
.. ...+..+||+|++.+|..+++.|++ ..+|||||+++++|||+ |++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdi-p~~ 339 (720)
T 2zj8_A 261 VKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINT-PAF 339 (720)
T ss_dssp HGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCC-CBS
T ss_pred HHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCC-Cce
Confidence 11 1248999999999999999999999 99999999999999999 999
Q ss_pred cEEEE----cC----CCCCHhhHHHHhcccccCC--CCceEEEEeCcchHH-HHHHH
Q 008461 203 DWVVQ----VD----CPEDVASYIHRVGRTARYN--SGGRSVLFLTPTEMK-MLEKL 248 (564)
Q Consensus 203 ~~VI~----~d----~P~s~~~YiqRiGRtgR~g--~~G~~il~l~~~e~~-~l~~L 248 (564)
++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+.. +++.+
T Consensus 340 ~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~ 396 (720)
T 2zj8_A 340 RVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHY 396 (720)
T ss_dssp EEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHH
T ss_pred EEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHH
Confidence 99999 77 5899999999999999998 579999999988744 34333
No 35
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.96 E-value=9.6e-28 Score=273.13 Aligned_cols=226 Identities=15% Similarity=0.190 Sum_probs=175.6
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhC---CCCCcEEEEeccCChhHHHHH
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL---PKHRQTFLFSATQTKSVQDLA 82 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l---p~~~Q~llfSATl~~~v~~l~ 82 (564)
.++++|+|||||+|..++...+ ..++++++||+||||++.++++...+..++..+ ++..|++++|||+++ ...++
T Consensus 112 ~~~~~Iiv~Tpe~l~~~l~~~~-~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~ 189 (702)
T 2p6r_A 112 LGDCDIIVTTSEKADSLIRNRA-SWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIA 189 (702)
T ss_dssp STTCSEEEEEHHHHHHHHHTTC-SGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHH
T ss_pred ccCCCEEEECHHHHHHHHHcCh-hHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHH
Confidence 4579999999999998887753 336899999999999999988888888887665 568999999999997 46666
Q ss_pred HHhcCCCCcccccccccccCCccceeEEEE------cCcc-------cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHH
Q 008461 83 RLSLKDPQYLSVHEESVTATPNRLQQTAMI------VPLE-------QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFE 149 (564)
Q Consensus 83 ~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~------~~~~-------~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e 149 (564)
.+... + .+... ..|..+...+.. .... .....+...+. .++++||||+|++.++.++.
T Consensus 190 ~~l~~-~-~~~~~-----~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~ 260 (702)
T 2p6r_A 190 EWLDA-D-YYVSD-----WRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAV 260 (702)
T ss_dssp HHTTC-E-EEECC-----CCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHH
T ss_pred HHhCC-C-cccCC-----CCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHH
Confidence 65432 2 11111 011112221110 1101 14556666554 36899999999999999999
Q ss_pred HHHhhCC----------------------------CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCC
Q 008461 150 AFKKLRP----------------------------GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 200 (564)
Q Consensus 150 ~L~~l~~----------------------------gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp 200 (564)
.|....+ +..+..+||+|++.+|..+++.|++ ..+|||||+++++|||+ |
T Consensus 261 ~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidi-p 339 (702)
T 2p6r_A 261 KLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNL-P 339 (702)
T ss_dssp HHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCC-C
T ss_pred HHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCC-C
Confidence 8875311 1357889999999999999999999 99999999999999999 9
Q ss_pred CCcEEEE----cC---CCCCHhhHHHHhcccccCC--CCceEEEEeCcchHH
Q 008461 201 AVDWVVQ----VD---CPEDVASYIHRVGRTARYN--SGGRSVLFLTPTEMK 243 (564)
Q Consensus 201 ~V~~VI~----~d---~P~s~~~YiqRiGRtgR~g--~~G~~il~l~~~e~~ 243 (564)
++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+..
T Consensus 340 ~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 340 ARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp BSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred ceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHH
Confidence 9999999 66 7899999999999999998 589999999988743
No 36
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.96 E-value=6.2e-28 Score=283.86 Aligned_cols=237 Identities=17% Similarity=0.204 Sum_probs=180.7
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
..++|+|+|||+|+.++... ...+.++.+|||||||++.+++|+..+..++..+|+..|++++|||+++... ++.+..
T Consensus 122 ~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~e-f~~~l~ 199 (997)
T 4a4z_A 122 PDANCLIMTTEILRSMLYRG-ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYE-FANWIG 199 (997)
T ss_dssp TTSSEEEEEHHHHHHHHHHT-CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHHH-HHHHHH
T ss_pred CCCCEEEECHHHHHHHHHhC-chhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCChHH-HHHHHh
Confidence 45899999999999998765 3457899999999999999999999999999999999999999999987653 333322
Q ss_pred C---CCCcccccccccccCCccc---------------------------------------------------------
Q 008461 87 K---DPQYLSVHEESVTATPNRL--------------------------------------------------------- 106 (564)
Q Consensus 87 ~---~p~~i~v~~~~~~~~p~~l--------------------------------------------------------- 106 (564)
. .+.++..... .|..+
T Consensus 200 ~~~~~~~~vi~~~~----r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (997)
T 4a4z_A 200 RTKQKNIYVISTPK----RPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGR 275 (997)
T ss_dssp HHHTCCEEEEECSS----CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------------------------
T ss_pred cccCCceEEEecCC----CCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccc
Confidence 1 1111111000 00111
Q ss_pred ------------------------------------eeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHH
Q 008461 107 ------------------------------------QQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEA 150 (564)
Q Consensus 107 ------------------------------------~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~ 150 (564)
..++..++...++..+..++......++||||+|++.|+.++..
T Consensus 276 ~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~ 355 (997)
T 4a4z_A 276 GGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADW 355 (997)
T ss_dssp -----------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHH
Confidence 11222233455677888888888788999999999999999998
Q ss_pred HHhhCC-------------------------------------CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc
Q 008461 151 FKKLRP-------------------------------------GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 192 (564)
Q Consensus 151 L~~l~~-------------------------------------gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~ 192 (564)
|..... ...+..+||+|++..|..++..|.. ..+|||||+++
T Consensus 356 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~ 435 (997)
T 4a4z_A 356 LEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETF 435 (997)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHh
Confidence 865311 1247899999999999999999999 99999999999
Q ss_pred ccCCCcCCCCcEEEEcCCCC---------CHhhHHHHhcccccCC--CCceEEEEeC--cchHHHHHHHHHc
Q 008461 193 SRGLDFNKAVDWVVQVDCPE---------DVASYIHRVGRTARYN--SGGRSVLFLT--PTEMKMLEKLREA 251 (564)
Q Consensus 193 arGLD~pp~V~~VI~~d~P~---------s~~~YiqRiGRtgR~g--~~G~~il~l~--~~e~~~l~~L~~~ 251 (564)
++|||+ |+ ..||.++.|. ++..|+||+|||||.| ..|.+++++. +.+...++.+...
T Consensus 436 a~GIDi-P~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~ 505 (997)
T 4a4z_A 436 AMGLNL-PT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMG 505 (997)
T ss_dssp HHSCCC-CC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHS
T ss_pred hCCCCC-CC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcC
Confidence 999999 88 5555555554 9999999999999998 5788888883 4455677776543
No 37
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=7.1e-28 Score=227.70 Aligned_cols=156 Identities=23% Similarity=0.448 Sum_probs=141.9
Q ss_pred CCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc
Q 008461 102 TPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181 (564)
Q Consensus 102 ~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~ 181 (564)
++..+.|+|+.++...|+..|..++......++||||+|+..++.++..|... |+.+..+||+|++.+|..+++.|++
T Consensus 2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp ---CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred ccCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHC
Confidence 46789999999999999999999999888899999999999999999999885 8999999999999999999999999
Q ss_pred -cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcch-HHHHHHHHHc-CCCcccc
Q 008461 182 -KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE-MKMLEKLREA-KIPIHFT 258 (564)
Q Consensus 182 -~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e-~~~l~~L~~~-~i~i~~~ 258 (564)
...|||||+++++|+|+ |++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+ ..+++.+.+. ++++..+
T Consensus 80 g~~~vLvaT~~~~~Gldi-~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (172)
T 1t5i_A 80 FQRRILVATNLFGRGMDI-ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 158 (172)
T ss_dssp TSCSEEEESSCCSTTCCG-GGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEEC
T ss_pred CCCcEEEECCchhcCcch-hhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhC
Confidence 99999999999999999 899999999999999999999999999999999999999875 4578888765 6776665
Q ss_pred cc
Q 008461 259 KA 260 (564)
Q Consensus 259 ~~ 260 (564)
+.
T Consensus 159 ~~ 160 (172)
T 1t5i_A 159 PD 160 (172)
T ss_dssp C-
T ss_pred Ch
Confidence 43
No 38
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.95 E-value=3e-28 Score=276.25 Aligned_cols=233 Identities=19% Similarity=0.228 Sum_probs=179.3
Q ss_pred CCCcEEEEcHHHH-HHHHhcCC-----CCCCCCcceEEEeccCccC-c---------------ccHHHHHHHHHHhCC--
Q 008461 7 NELNILVCTPGRL-LQHMDETP-----NFDCSQLQILILDEADRIL-D---------------VGFKKALNAIVSQLP-- 62 (564)
Q Consensus 7 ~~~~ILV~TPgrL-l~~L~~~~-----~~~~~~L~~lVlDEAD~ll-d---------------~gf~~~l~~Il~~lp-- 62 (564)
.+++|+|||||+| +++|..+- .+.++.+.++||||||+|| | ++|...+..|+..+|
T Consensus 199 y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~ 278 (922)
T 1nkt_A 199 YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKD 278 (922)
T ss_dssp HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBT
T ss_pred cCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCccc
Confidence 3689999999999 77776542 3567899999999999988 5 468999999999998
Q ss_pred -------CCCcEE-----------------EEeccCChhHHHHH-----HHhc-CCCCcc-------ccccc--------
Q 008461 63 -------KHRQTF-----------------LFSATQTKSVQDLA-----RLSL-KDPQYL-------SVHEE-------- 97 (564)
Q Consensus 63 -------~~~Q~l-----------------lfSATl~~~v~~l~-----~~~l-~~p~~i-------~v~~~-------- 97 (564)
+.+|++ |||||.+..+..+. ...+ ++..|+ .+...
T Consensus 279 ~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~gr 358 (922)
T 1nkt_A 279 VHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGR 358 (922)
T ss_dssp TTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTC
T ss_pred ccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCc
Confidence 789999 99999886544432 2222 222222 11100
Q ss_pred -------------------ccccCCccce-----------------------------------------------eEEE
Q 008461 98 -------------------SVTATPNRLQ-----------------------------------------------QTAM 111 (564)
Q Consensus 98 -------------------~~~~~p~~l~-----------------------------------------------q~~~ 111 (564)
....+...+. +.++
T Consensus 359 r~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v 438 (922)
T 1nkt_A 359 RYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLI 438 (922)
T ss_dssp CCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEE
T ss_pred cccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEE
Confidence 0000111111 1235
Q ss_pred EcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEe
Q 008461 112 IVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCT 189 (564)
Q Consensus 112 ~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaT 189 (564)
.+....|...|...+... .+.++||||+|+..++.|+..|... |+++..|||++.+.++..+...|+. ..|+|||
T Consensus 439 ~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~--Gi~~~vLnak~~~rEa~iia~agr~-G~VtIAT 515 (922)
T 1nkt_A 439 YKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR--RIPHNVLNAKYHEQEATIIAVAGRR-GGVTVAT 515 (922)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT--TCCCEEECSSCHHHHHHHHHTTTST-TCEEEEE
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC--CCCEEEecCChhHHHHHHHHhcCCC-CeEEEec
Confidence 566678999999888653 4679999999999999999999985 9999999999887777666666654 4799999
Q ss_pred cccccCCCcCCCC----------------------------------------------------cEEEEcCCCCCHhhH
Q 008461 190 DVASRGLDFNKAV----------------------------------------------------DWVVQVDCPEDVASY 217 (564)
Q Consensus 190 dv~arGLD~pp~V----------------------------------------------------~~VI~~d~P~s~~~Y 217 (564)
|+++||+|| +.+ .+||+|+.|.+...|
T Consensus 516 nmAgRGtDI-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy 594 (922)
T 1nkt_A 516 NMAGRGTDI-VLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRID 594 (922)
T ss_dssp TTCSTTCCC-CTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHH
T ss_pred chhhcCccc-cCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHH
Confidence 999999999 654 599999999999999
Q ss_pred HHHhcccccCCCCceEEEEeCcchHH
Q 008461 218 IHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 218 iqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
+||+|||||.|.+|.+++|++..+.-
T Consensus 595 ~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 595 NQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp HHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred HHHhcccccCCCCeeEEEEechhHHH
Confidence 99999999999999999999987653
No 39
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=226.43 Aligned_cols=158 Identities=26% Similarity=0.432 Sum_probs=141.8
Q ss_pred cCCccceeEEEEcCccc-HHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHH
Q 008461 101 ATPNRLQQTAMIVPLEQ-KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179 (564)
Q Consensus 101 ~~p~~l~q~~~~~~~~~-Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F 179 (564)
.++.++.|+|+.++... |+..|..++......++||||+|+..++.++..|... |+.+..+||+|++.+|..+++.|
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHH
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHH
Confidence 35778999999999765 9999999998887899999999999999999999875 89999999999999999999999
Q ss_pred hc-cCCeEEEecccccCCCcCCCCcEEEEcCCC------CCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHHHHc-
Q 008461 180 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA- 251 (564)
Q Consensus 180 ~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P------~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~- 251 (564)
++ ...|||||+++++|+|+ |++++||+||+| .++.+|+||+|||||.|+.|.+++|+++.+..++..+.+.
T Consensus 81 ~~g~~~vLvaT~~~~~Gid~-~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~ 159 (175)
T 2rb4_A 81 RDGKEKVLITTNVCARGIDV-KQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHF 159 (175)
T ss_dssp HTTSCSEEEECCSCCTTTCC-TTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHH
T ss_pred HcCCCeEEEEecchhcCCCc-ccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHh
Confidence 99 99999999999999999 899999999999 9999999999999999999999999999998888888776
Q ss_pred CCCccccccc
Q 008461 252 KIPIHFTKAN 261 (564)
Q Consensus 252 ~i~i~~~~~~ 261 (564)
+.++..+...
T Consensus 160 ~~~~~~~~~~ 169 (175)
T 2rb4_A 160 NSSIKQLNAE 169 (175)
T ss_dssp TCCCEEECSS
T ss_pred cCcccccCCc
Confidence 7777666543
No 40
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.95 E-value=2.1e-27 Score=274.14 Aligned_cols=125 Identities=21% Similarity=0.286 Sum_probs=74.0
Q ss_pred ccHHHHHHHHHHH----cCCCcEEEEeCChHHHHHHHHHHHhh----------CCCCCeeeccCCCCHHHHHHHHHHHhc
Q 008461 116 EQKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKL----------RPGIPLMCLYGRMKQDRRMAIYAQFCE 181 (564)
Q Consensus 116 ~~Kl~~L~~~L~~----~~~~k~IVF~~t~k~v~~l~e~L~~l----------~~gi~v~~lHg~m~~~~R~~i~~~F~~ 181 (564)
..|+..|..+|.. ..+.++||||+++..++.++..|... ..|.....+||+|++.+|..+++.|++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------------------
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhc
Confidence 3466677777765 45689999999999999999999863 125566778999999999999999997
Q ss_pred --cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 182 --KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 182 --~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
...|||||+++++|||+ |+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+..
T Consensus 692 ~g~~~vLVaT~~~~~GIDl-p~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 692 SKDNRLLIATSVADEGIDI-VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp --CCSEEEEECC--------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred cCCceEEEEcCchhcCCCc-hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 67899999999999999 899999999999999999999999 999 899999999987654
No 41
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=1.2e-29 Score=275.43 Aligned_cols=281 Identities=16% Similarity=0.177 Sum_probs=189.3
Q ss_pred CcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCc-----cCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHH
Q 008461 9 LNILVCTPGRLLQHMDETPNFDCSQLQILILDEADR-----ILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLAR 83 (564)
Q Consensus 9 ~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~-----lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~ 83 (564)
.-|.++|.+.+...+... ..+.++++|||||||+ ++.++|...+. .++..|+++||||++..+..+..
T Consensus 90 ~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~~~~~~~~~~ 162 (459)
T 2z83_A 90 EIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATPPGTTDPFPD 162 (459)
T ss_dssp CSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSCTTCCCSSCC
T ss_pred cEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCCCcchhhhcc
Confidence 457789999988777765 4568999999999998 44455433322 23589999999999875422111
Q ss_pred HhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeec
Q 008461 84 LSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL 163 (564)
Q Consensus 84 ~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~l 163 (564)
. ..|... +. + .++ ......++.++... ++++||||+|++.++.+++.|... ++.+..+
T Consensus 163 ~--~~pi~~-~~------------~---~~~-~~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~--g~~v~~l 220 (459)
T 2z83_A 163 S--NAPIHD-LQ------------D---EIP-DRAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRA--GKKVIQL 220 (459)
T ss_dssp C--SSCEEE-EE------------C---CCC-SSCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHT--TCCEEEE
T ss_pred C--CCCeEE-ec------------c---cCC-cchhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhc--CCcEEec
Confidence 0 111111 00 0 000 01111223344444 689999999999999999999986 8999999
Q ss_pred cCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEE--------------------cCCCCCHhhHHHHhc
Q 008461 164 YGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ--------------------VDCPEDVASYIHRVG 222 (564)
Q Consensus 164 Hg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~--------------------~d~P~s~~~YiqRiG 222 (564)
||. +|..+++.|++ ...|||||+++++|||| |+ ++||+ |++|.+..+|+||+|
T Consensus 221 h~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDi-p~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~G 294 (459)
T 2z83_A 221 NRK----SYDTEYPKCKNGDWDFVITTDISEMGANF-GA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRG 294 (459)
T ss_dssp STT----CCCCCGGGSSSCCCSEEEESSCC---CCC-SC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHT
T ss_pred CHH----HHHHHHhhccCCCceEEEECChHHhCeec-CC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhcc
Confidence 995 67889999999 99999999999999999 88 99999 779999999999999
Q ss_pred ccccCCC-CceEEEEeCcc--hHHHHHHHHHc-----CCCccccccccccchhHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 008461 223 RTARYNS-GGRSVLFLTPT--EMKMLEKLREA-----KIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYL 294 (564)
Q Consensus 223 RtgR~g~-~G~~il~l~~~--e~~~l~~L~~~-----~i~i~~~~~~~~~~~~i~~~l~~~~~~~~~l~~~a~~af~sy~ 294 (564)
||||.|. .|.+++|+++. +...+..+... ++.+..- +....+..-...+ ..+.....+...+.++|.+|+
T Consensus 295 RaGR~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~p~~~k~-~~~~~~~~l~~~~~~~~~~~l 372 (459)
T 2z83_A 295 RVGRNPNQVGDEYHYGGATSEDDSNLAHWTEAKIMLDNIHMPNG-LVAQLYGPEREKA-FTMDGEYRLRGEEKKNFLELL 372 (459)
T ss_dssp TSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCCTTS-CCCCCCGGGGGGC-CCCTTTTCCCHHHHHHHHHHH
T ss_pred ccCCCCCCCCeEEEEEcccccchhhhhhhhhHHHHHhcCCChHH-HHHhccCCCcccc-cccCcchhcchHHHHHHHHHH
Confidence 9999997 99999999886 32222222211 1211110 0000111100111 112345566788899999999
Q ss_pred HHHhcccccccccccCCCHHHHHHhcCCCCCCc
Q 008461 295 RSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPK 327 (564)
Q Consensus 295 rs~~~~~~k~if~~~~l~l~~~A~s~GL~~~P~ 327 (564)
+++-.. ....|.+..+++...+.+||+.++|.
T Consensus 373 ~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (459)
T 2z83_A 373 RTADLP-VWLAYKVASNGIQYTDRKWCFDGPRT 404 (459)
T ss_dssp HTSCCC-HHHHHHHHHTTCCTTCCGGGTCSCGG
T ss_pred hhcCCC-hhHhHHHhhccCccccceeeeeCCCC
Confidence 976532 33457777788878888999999884
No 42
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=4.5e-27 Score=229.67 Aligned_cols=155 Identities=30% Similarity=0.491 Sum_probs=141.5
Q ss_pred CccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-
Q 008461 103 PNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE- 181 (564)
Q Consensus 103 p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~- 181 (564)
|..+.+.++.++...|+..|..++....+.++||||+|+..++.++..|... |+.+..+||+|++.+|..+++.|++
T Consensus 3 ~i~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g 80 (212)
T 3eaq_A 3 PVTYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQG 80 (212)
T ss_dssp -CCBCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHSS
T ss_pred CcceeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 3456778888999999999999999888999999999999999999999886 8999999999999999999999999
Q ss_pred cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccccc
Q 008461 182 KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKA 260 (564)
Q Consensus 182 ~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~-~i~i~~~~~ 260 (564)
...|||||+++++|||+ |+|++||+||+|.++..|+||+|||||.|+.|.|++|+++.+..++..+.+. +.++.....
T Consensus 81 ~~~vlvaT~~~~~Gidi-~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 81 EVRVLVATDVAARGLDI-PQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 159 (212)
T ss_dssp SCCEEEECTTTTCSSSC-CCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCC
T ss_pred CCeEEEecChhhcCCCC-ccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCC
Confidence 99999999999999999 9999999999999999999999999999999999999999999999888776 666665544
No 43
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=3.5e-27 Score=220.89 Aligned_cols=155 Identities=22% Similarity=0.409 Sum_probs=136.9
Q ss_pred ccceeEEEEcCccc-HHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-
Q 008461 104 NRLQQTAMIVPLEQ-KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE- 181 (564)
Q Consensus 104 ~~l~q~~~~~~~~~-Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~- 181 (564)
.++.|+|+.++... |+..|..++......++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 46789999998877 9999999999988899999999999999999999885 8899999999999999999999999
Q ss_pred cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccccc
Q 008461 182 KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKA 260 (564)
Q Consensus 182 ~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~-~i~i~~~~~ 260 (564)
...|||||+++++|+|+ |++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+...+..+... +.+++.+..
T Consensus 80 ~~~vlv~T~~~~~G~d~-~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (165)
T 1fuk_A 80 SSRILISTDLLARGIDV-QQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 158 (165)
T ss_dssp SCSEEEEEGGGTTTCCC-CSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCS
T ss_pred CCEEEEEcChhhcCCCc-ccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCc
Confidence 99999999999999999 8999999999999999999999999999999999999999999888888765 666666554
Q ss_pred c
Q 008461 261 N 261 (564)
Q Consensus 261 ~ 261 (564)
.
T Consensus 159 ~ 159 (165)
T 1fuk_A 159 D 159 (165)
T ss_dssp C
T ss_pred c
Confidence 3
No 44
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=2.8e-27 Score=227.78 Aligned_cols=163 Identities=27% Similarity=0.408 Sum_probs=130.3
Q ss_pred HHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCee
Q 008461 82 ARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLM 161 (564)
Q Consensus 82 ~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~ 161 (564)
.+.++.+|..|.+.... .++.++.|.|+.++...|+..|..+|... +.++||||+|+..++.++..|... |+.+.
T Consensus 8 ~~~~~~~p~~i~v~~~~--~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~ 82 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMG--AASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLK--GVEAV 82 (191)
T ss_dssp ----------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHH--TCCEE
T ss_pred cccccCCCEEEEECCCC--CCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHc--CCcEE
Confidence 35577889888775443 46678999999999999999999999775 568999999999999999999886 89999
Q ss_pred eccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcc
Q 008461 162 CLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240 (564)
Q Consensus 162 ~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~ 240 (564)
.+||+|++.+|..+++.|++ ...|||||+++++|+|+ |++++||+||+|+++.+|+||+|||||.|+.|.+++|+++.
T Consensus 83 ~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi-~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 83 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDF-PAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp EECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCC-CCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCc-ccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 99999999999999999999 99999999999999999 99999999999999999999999999999999999999986
Q ss_pred -hHHHHHHHHH
Q 008461 241 -EMKMLEKLRE 250 (564)
Q Consensus 241 -e~~~l~~L~~ 250 (564)
+..++..|.+
T Consensus 162 ~~~~~~~~l~~ 172 (191)
T 2p6n_A 162 CDESVLMDLKA 172 (191)
T ss_dssp SCHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 5556666544
No 45
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.95 E-value=8.4e-28 Score=272.38 Aligned_cols=105 Identities=18% Similarity=0.304 Sum_probs=89.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhh----CCCCCeeeccCC--------CCHHHHHHHHHHHhc-cCCeEEEecccccCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKL----RPGIPLMCLYGR--------MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLD 197 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l----~~gi~v~~lHg~--------m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD 197 (564)
+.++||||+|++.++.+++.|... ..|+.+..+||+ |++.+|..+++.|++ ...|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 689999999999999999999864 127899999999 999999999999999 9999999999999999
Q ss_pred cCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCc
Q 008461 198 FNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 239 (564)
Q Consensus 198 ~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~ 239 (564)
+ |+|++||+||+|+++..|+||+||+||.| .+++++.+
T Consensus 480 i-p~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 480 I-KECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp C-CSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred c-ccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 9 89999999999999999999999976544 44455544
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.95 E-value=1.7e-27 Score=273.59 Aligned_cols=223 Identities=23% Similarity=0.291 Sum_probs=174.7
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccC-ccCcccH-HHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEAD-RILDVGF-KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD-~lld~gf-~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
...+|+|+|||+|+.++... ..+.++++||||||| +.++..+ ...+..++... +..|++++|||++. ..+...
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~~~ 258 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMED--HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQRY 258 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHHHH
T ss_pred CCCCEEEECHHHHHHHHhhC--ccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHHHH
Confidence 46889999999999888765 346899999999999 4776443 34455555555 47899999999964 345554
Q ss_pred hcCCCCcccccccccccCCccceeEEEEcCcccHHH----HHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhh------
Q 008461 85 SLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD----MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKL------ 154 (564)
Q Consensus 85 ~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~----~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l------ 154 (564)
+ .++..+.+... ...+.++|...+...... .+..++....++++||||+++..++.++..|...
T Consensus 259 ~-~~~~vi~v~gr-----~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~ 332 (773)
T 2xau_A 259 F-NDAPLLAVPGR-----TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVR 332 (773)
T ss_dssp T-TSCCEEECCCC-----CCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHH
T ss_pred h-cCCCcccccCc-----ccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcc
Confidence 4 43434433221 123566666555555443 3334444445789999999999999999999741
Q ss_pred ---CCCCCeeeccCCCCHHHHHHHHHHHh-----c-cCCeEEEecccccCCCcCCCCcEEEEcCC---------------
Q 008461 155 ---RPGIPLMCLYGRMKQDRRMAIYAQFC-----E-KRSVLFCTDVASRGLDFNKAVDWVVQVDC--------------- 210 (564)
Q Consensus 155 ---~~gi~v~~lHg~m~~~~R~~i~~~F~-----~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~--------------- 210 (564)
.+++.+..+||+|++.+|..+++.|. . ..+|||||+++++|||| |+|++||++++
T Consensus 333 ~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidI-p~v~~VId~g~~k~~~yd~~~g~~~L 411 (773)
T 2xau_A 333 EEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTI-DGIVYVVDPGFSKQKVYNPRIRVESL 411 (773)
T ss_dssp HHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCC-TTEEEEEECSEEEEEEEETTTTEEEE
T ss_pred cccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCc-CCeEEEEeCCCccceeeccccCcccc
Confidence 25788999999999999999999998 7 88999999999999999 89999999888
Q ss_pred ---CCCHhhHHHHhcccccCCCCceEEEEeCcchH
Q 008461 211 ---PEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 242 (564)
Q Consensus 211 ---P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~ 242 (564)
|.+..+|+||+|||||. ..|.|+.|+++.+.
T Consensus 412 ~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 412 LVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred ccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 89999999999999999 79999999987654
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.94 E-value=9.8e-28 Score=269.15 Aligned_cols=199 Identities=23% Similarity=0.269 Sum_probs=152.8
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCc--EEEEeccCChhHHHHHH
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQ--TFLFSATQTKSVQDLAR 83 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q--~llfSATl~~~v~~l~~ 83 (564)
.++++|+|+|||+|+ ..+.+.+.++++||||||| +++++|...+..|+..++..+| ++++|||++..+.
T Consensus 295 ~~~~~IlV~TPGrLl----~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~---- 365 (666)
T 3o8b_A 295 TTGAPVTYSTYGKFL----ADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT---- 365 (666)
T ss_dssp CCCCSEEEEEHHHHH----HTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC----
T ss_pred cCCCCEEEECcHHHH----hCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc----
Confidence 357899999999984 3446778899999999995 6788999999999999998877 6777999998421
Q ss_pred HhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeec
Q 008461 84 LSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL 163 (564)
Q Consensus 84 ~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~l 163 (564)
...|....+.... ...+. ....... +......++||||+|++.++.+++.|... ++.+..+
T Consensus 366 --~~~p~i~~v~~~~----~~~i~----~~~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~--g~~v~~l 426 (666)
T 3o8b_A 366 --VPHPNIEEVALSN----TGEIP----FYGKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLSGL--GINAVAY 426 (666)
T ss_dssp --CCCTTEEEEECBS----CSSEE----ETTEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHHTT--TCCEEEE
T ss_pred --cCCcceEEEeecc----cchhH----HHHhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHHhC--CCcEEEe
Confidence 1222211111000 00010 0010000 11224789999999999999999999875 8999999
Q ss_pred cCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEE----------EcC-----------CCCCHhhHHHHh
Q 008461 164 YGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVV----------QVD-----------CPEDVASYIHRV 221 (564)
Q Consensus 164 Hg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI----------~~d-----------~P~s~~~YiqRi 221 (564)
||+|++.+ |.+ ..+||||||+++||||+ | |++|| ||| +|.+.++|+||+
T Consensus 427 HG~l~q~e-------r~~~~~~VLVATdVaerGIDI-d-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRi 497 (666)
T 3o8b_A 427 YRGLDVSV-------IPTIGDVVVVATDALMTGYTG-D-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRR 497 (666)
T ss_dssp CTTSCGGG-------SCSSSCEEEEECTTHHHHCCC-C-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHH
T ss_pred cCCCCHHH-------HHhCCCcEEEECChHHccCCC-C-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHh
Confidence 99999875 445 67999999999999999 7 99999 677 899999999999
Q ss_pred cccccCCCCceEEEEeCcchHH
Q 008461 222 GRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 222 GRtgR~g~~G~~il~l~~~e~~ 243 (564)
||||| |+.|. ++|+++.+..
T Consensus 498 GRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 498 GRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp TTBCS-SSCEE-EEESCCCCBC
T ss_pred ccCCC-CCCCE-EEEEecchhh
Confidence 99999 99999 9999987654
No 48
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.94 E-value=2.7e-26 Score=269.00 Aligned_cols=125 Identities=21% Similarity=0.281 Sum_probs=74.7
Q ss_pred ccHHHHHHHHHHHc----CCCcEEEEeCChHHHHHHHHHHHhh----------CCCCCeeeccCCCCHHHHHHHHHHHhc
Q 008461 116 EQKLDMLWSFIKAH----LNSKILVFLTSCKQVKYVFEAFKKL----------RPGIPLMCLYGRMKQDRRMAIYAQFCE 181 (564)
Q Consensus 116 ~~Kl~~L~~~L~~~----~~~k~IVF~~t~k~v~~l~e~L~~l----------~~gi~v~~lHg~m~~~~R~~i~~~F~~ 181 (564)
..|+..|..+|... .+.++||||++++.++.++..|... ..|.....+||+|++.+|..+++.|+.
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~ 691 (936)
T 4a2w_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (936)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc
Confidence 34666777777663 4689999999999999999999874 124556667999999999999999997
Q ss_pred --cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHH
Q 008461 182 --KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 243 (564)
Q Consensus 182 --~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~ 243 (564)
...|||||+++++|||+ |+|++||+||+|+++..|+||+|| ||. +.|.+++|++..+..
T Consensus 692 ~g~~~VLVaT~~~~eGIDl-p~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 692 SKDNRLLIATSVADEGIDI-VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp --CCSEEEEECC------C-CCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred cCCeeEEEEeCchhcCCcc-hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 67999999999999999 899999999999999999999999 999 789999999887554
No 49
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=221.48 Aligned_cols=147 Identities=28% Similarity=0.436 Sum_probs=123.0
Q ss_pred cCCccceeEEEEcCcccHHHHHHHHHHHc-CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHH
Q 008461 101 ATPNRLQQTAMIVPLEQKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 179 (564)
Q Consensus 101 ~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~-~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F 179 (564)
.++.++.|.|+.++...|+..|..+|... .+.++||||+|+..++.++..|... |+.+..+||+|++.+|..+++.|
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHH
Confidence 45778999999999999999999999887 4789999999999999999999884 89999999999999999999999
Q ss_pred hc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHHHH
Q 008461 180 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 250 (564)
Q Consensus 180 ~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~ 250 (564)
++ ...|||||+++++|+|+ |++++||+||+|+++.+|+||+||+||.|+.|.+++|+++.+..+++.+.+
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi-~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 163 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDI-SNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 163 (185)
T ss_dssp HHTSSSEEEEEC------CC-CSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHH
T ss_pred HcCCCeEEEEcChhhcCCCc-ccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHH
Confidence 99 99999999999999999 899999999999999999999999999999999999999998776666544
No 50
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=4.8e-26 Score=234.15 Aligned_cols=153 Identities=31% Similarity=0.490 Sum_probs=138.4
Q ss_pred cceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cC
Q 008461 105 RLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR 183 (564)
Q Consensus 105 ~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~ 183 (564)
.+.|+++.++...|+..|..++..+.+.++||||+|+..++.+++.|... ++.+..+||+|++.+|..+++.|++ ..
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 46789999999999999999999888999999999999999999999875 8999999999999999999999999 99
Q ss_pred CeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccccc
Q 008461 184 SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKA 260 (564)
Q Consensus 184 ~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~-~i~i~~~~~ 260 (564)
.|||||+++++|||+ |+|++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+..++..+++. +.++..+..
T Consensus 80 ~vLVaT~va~~Gidi-~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 80 RVLVATDVAARGLDI-PQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp CEEEECSTTTCSTTC-CCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCC
T ss_pred eEEEEechhhcCccc-cceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCC
Confidence 999999999999999 9999999999999999999999999999999999999999999999888876 666665544
No 51
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=2.6e-26 Score=273.59 Aligned_cols=217 Identities=15% Similarity=0.212 Sum_probs=171.4
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
+.++|+||||+.|. . .+.+.++++|||||||++ ......++..++.+.+++++|||+++....+....+
T Consensus 705 g~~dIvV~T~~ll~----~--~~~~~~l~lvIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~ 773 (1151)
T 2eyq_A 705 GKIDILIGTHKLLQ----S--DVKFKDLGLLIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 773 (1151)
T ss_dssp TCCSEEEECTHHHH----S--CCCCSSEEEEEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTT
T ss_pred CCCCEEEECHHHHh----C--CccccccceEEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcC
Confidence 46999999998663 2 456789999999999994 234456666777789999999999888777776666
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
.++..+...... ...+..++...........+...+ ..+.+++|||+++..++.+++.|....|++.+..+||+
T Consensus 774 ~~~~~i~~~~~~----r~~i~~~~~~~~~~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~ 847 (1151)
T 2eyq_A 774 RDLSIIATPPAR----RLAVKTFVREYDSMVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 847 (1151)
T ss_dssp SEEEECCCCCCB----CBCEEEEEEECCHHHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSS
T ss_pred CCceEEecCCCC----ccccEEEEecCCHHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 665544332111 122333333333222222222222 23689999999999999999999999899999999999
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCC-CCCHhhHHHHhcccccCCCCceEEEEeCcch
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC-PEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~-P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e 241 (564)
|++.+|..++..|++ ...|||||+++++|||+ |++++||++++ +.++.+|+||+||+||.|+.|.|++++.+.+
T Consensus 848 ~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi-p~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 848 MRERELERVMNDFHHQRFNVLVCTTIIETGIDI-PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp CCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC-TTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCcceeeecc-cCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 999999999999999 99999999999999999 99999999998 5799999999999999999999999998653
No 52
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.94 E-value=6.8e-27 Score=264.50 Aligned_cols=252 Identities=15% Similarity=0.201 Sum_probs=168.7
Q ss_pred EEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCC-CCCcEEEEeccCChhHHHHHHHhcCCCCc
Q 008461 13 VCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLP-KHRQTFLFSATQTKSVQDLARLSLKDPQY 91 (564)
Q Consensus 13 V~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp-~~~Q~llfSATl~~~v~~l~~~~l~~p~~ 91 (564)
+.+.+.+...+.+. ..+.++++|||||||++ +..+...+..+...++ ..+|+++||||++..+..+.. .++..
T Consensus 314 ~l~~~~l~~~l~~~--~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~---~~~~i 387 (673)
T 2wv9_A 314 VMCHATLTHRLMSP--LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPD---TNSPV 387 (673)
T ss_dssp EEEHHHHHHHHHSS--SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC---CSSCE
T ss_pred HHHhhhhHHHHhcc--cccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcc---cCCce
Confidence 33444444444443 35789999999999998 4434444444444443 679999999999866322111 00000
Q ss_pred ccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHH
Q 008461 92 LSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDR 171 (564)
Q Consensus 92 i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~ 171 (564)
..+ ...++.. ....++..+.. .+.++||||+|++.++.+++.|... ++.+..+||+ +
T Consensus 388 ~~v---------------~~~~~~~-~~~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~--g~~v~~lHg~----e 444 (673)
T 2wv9_A 388 HDV---------------SSEIPDR-AWSSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRA--GKRVIQLNRK----S 444 (673)
T ss_dssp EEE---------------ECCCCSS-CCSSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECSS----S
T ss_pred EEE---------------eeecCHH-HHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhC--CCeEEEeChH----H
Confidence 000 0001111 11122333433 3789999999999999999999985 8999999994 7
Q ss_pred HHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEE--------------------cCCCCCHhhHHHHhcccccC-CC
Q 008461 172 RMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ--------------------VDCPEDVASYIHRVGRTARY-NS 229 (564)
Q Consensus 172 R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~--------------------~d~P~s~~~YiqRiGRtgR~-g~ 229 (564)
|..+++.|++ ...|||||+++++|||+ | |++||+ |++|.+.++|+||+|||||. |+
T Consensus 445 R~~v~~~F~~g~~~VLVaTdv~e~GIDi-p-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~ 522 (673)
T 2wv9_A 445 YDTEYPKCKNGDWDFVITTDISEMGANF-G-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQ 522 (673)
T ss_dssp HHHHGGGGGTCCCSEEEECGGGGTTCCC-C-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSC
T ss_pred HHHHHHHHHCCCceEEEECchhhcceee-C-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCC
Confidence 8999999999 99999999999999999 8 999998 67999999999999999999 78
Q ss_pred CceEEEEe---CcchHHHHHHHHHcCCCcccccccccc----chhHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 008461 230 GGRSVLFL---TPTEMKMLEKLREAKIPIHFTKANTKR----LQPVSGLLAALLVKYPDMQHRAQKAFITYLRSV 297 (564)
Q Consensus 230 ~G~~il~l---~~~e~~~l~~L~~~~i~i~~~~~~~~~----~~~i~~~l~~~~~~~~~l~~~a~~af~sy~rs~ 297 (564)
.|.|++|+ ++.+..++..++.. +.+..+...... ...-+..+. .+..+..+.+.++++|.+|++..
T Consensus 523 ~G~ai~l~~~~~~~d~~~l~~ie~~-~~l~~~~~~~g~~~a~~~~~q~~~~-~~~~~~~l~~~a~~~~~~ll~~~ 595 (673)
T 2wv9_A 523 IGDEYHYGGGTSEDDTMLAHWTEAK-ILLDNIHLPNGLVAQLYGPERDKTY-TMDGEYRLRGEERKTFLELIKTA 595 (673)
T ss_dssp CCEEEEECSCCCCCCTTBHHHHHHH-HHHHTSCBTTTBCCCCCGGGGGGCC-CCTTTTCCCHHHHHHHHHHHHTS
T ss_pred CCEEEEEEecCChhHHHHHHHHHHH-HhhhhccCCchhhhhccchhhhccc-cchhhhhHHHHHHHHHHHHHhcc
Confidence 99999996 56665555555442 111111111100 000001111 13456677889999999999853
No 53
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=9.8e-26 Score=276.54 Aligned_cols=245 Identities=16% Similarity=0.173 Sum_probs=180.1
Q ss_pred CCCcEEEEcHHHHHHHHhcCCC-CCCCCcceEEEeccCccCcccHHHHHHHHH-------HhCCCCCcEEEEeccCChhH
Q 008461 7 NELNILVCTPGRLLQHMDETPN-FDCSQLQILILDEADRILDVGFKKALNAIV-------SQLPKHRQTFLFSATQTKSV 78 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~-~~~~~L~~lVlDEAD~lld~gf~~~l~~Il-------~~lp~~~Q~llfSATl~~~v 78 (564)
.+++|+|||||++..++.+... ..++++++||+||+|+|.+. ++..+..++ ..++++.|++++|||+++.
T Consensus 1019 ~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~- 1096 (1724)
T 4f92_B 1019 GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA- 1096 (1724)
T ss_dssp HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-
T ss_pred CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-
Confidence 4689999999999666554322 12678999999999988875 455554444 3467789999999999974
Q ss_pred HHHHHHhcCCCCcc-cccccccccCCccceeEEEEcCcccHH-------HHHHHHHHHc-CCCcEEEEeCChHHHHHHHH
Q 008461 79 QDLARLSLKDPQYL-SVHEESVTATPNRLQQTAMIVPLEQKL-------DMLWSFIKAH-LNSKILVFLTSCKQVKYVFE 149 (564)
Q Consensus 79 ~~l~~~~l~~p~~i-~v~~~~~~~~p~~l~q~~~~~~~~~Kl-------~~L~~~L~~~-~~~k~IVF~~t~k~v~~l~e 149 (564)
.+++.+....+..+ .+.. . ..|..++.++...+..... ..+...+..+ ..+++||||+|++.|+.++.
T Consensus 1097 ~dla~WL~~~~~~~~~~~~-~--~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~ 1173 (1724)
T 4f92_B 1097 KDVAHWLGCSATSTFNFHP-N--VRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAI 1173 (1724)
T ss_dssp HHHHHHHTCCSTTEEECCG-G--GCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEEeCC-C--CCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHH
Confidence 56666554433222 2221 1 2344455555444432221 2233344443 46899999999999998877
Q ss_pred HHHhhC--------------------------------CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCC
Q 008461 150 AFKKLR--------------------------------PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGL 196 (564)
Q Consensus 150 ~L~~l~--------------------------------~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGL 196 (564)
.|.... -...+++|||+|++.+|..+++.|++ ..+|||||+++++||
T Consensus 1174 ~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GV 1253 (1724)
T 4f92_B 1174 DILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGM 1253 (1724)
T ss_dssp HHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSC
T ss_pred HHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCC
Confidence 664320 02347899999999999999999999 999999999999999
Q ss_pred CcCCCCcEEEE----------cCCCCCHhhHHHHhcccccCCC--CceEEEEeCcchHHHHHHHHHcCCCccc
Q 008461 197 DFNKAVDWVVQ----------VDCPEDVASYIHRVGRTARYNS--GGRSVLFLTPTEMKMLEKLREAKIPIHF 257 (564)
Q Consensus 197 D~pp~V~~VI~----------~d~P~s~~~YiqRiGRtgR~g~--~G~~il~l~~~e~~~l~~L~~~~i~i~~ 257 (564)
|+ |++.+||. ...|.++.+|+||+|||||.|. .|.|++|+.+.+..+++++...+.|++.
T Consensus 1254 nl-Pa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS 1325 (1724)
T 4f92_B 1254 NV-AAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVES 1325 (1724)
T ss_dssp CC-CBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCC
T ss_pred CC-CccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceee
Confidence 99 88888883 2346799999999999999996 7999999999999988888777777653
No 54
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.93 E-value=8e-27 Score=267.36 Aligned_cols=218 Identities=18% Similarity=0.267 Sum_probs=157.7
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
+.++|+||||++|.+ .+.+.++++||+||||++.. .. ...+.......|+++||||+++....+.. .
T Consensus 470 g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g~---~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~ 536 (780)
T 1gm5_A 470 GQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFGV---KQ--REALMNKGKMVDTLVMSATPIPRSMALAF--Y 536 (780)
T ss_dssp SCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHHH--T
T ss_pred CCCCEEEECHHHHhh------hhhccCCceEEecccchhhH---HH--HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--h
Confidence 469999999998754 35678999999999999632 11 22223334578999999998776544433 2
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCCh--------HHHHHHHHHHHh-hC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSC--------KQVKYVFEAFKK-LR 155 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~--------k~v~~l~e~L~~-l~ 155 (564)
.+.....+....... ..+... +....+...++.++... .+.+++|||+++ ..++.+++.|.. ..
T Consensus 537 g~~~~s~i~~~p~~r--~~i~~~---~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~ 611 (780)
T 1gm5_A 537 GDLDVTVIDEMPPGR--KEVQTM---LVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF 611 (780)
T ss_dssp CCSSCEEECCCCSSC--CCCEEC---CCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC
T ss_pred CCcceeeeeccCCCC--cceEEE---EeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhc
Confidence 222111111110001 112211 12234455666766553 367899999965 457888888887 66
Q ss_pred CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCC-CHhhHHHHhcccccCCCCceE
Q 008461 156 PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGGRS 233 (564)
Q Consensus 156 ~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~-s~~~YiqRiGRtgR~g~~G~~ 233 (564)
+++.+..+||+|++.+|..+++.|++ ...|||||+++++|||+ |+|++||++++|. +...|+||+||+||.|..|.|
T Consensus 612 ~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDi-P~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ 690 (780)
T 1gm5_A 612 PEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV-PRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYC 690 (780)
T ss_dssp ---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCC-TTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEE
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccC-CCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEE
Confidence 78999999999999999999999999 99999999999999999 9999999999996 789999999999999999999
Q ss_pred EEEeCcchHH
Q 008461 234 VLFLTPTEMK 243 (564)
Q Consensus 234 il~l~~~e~~ 243 (564)
++++.+.+..
T Consensus 691 ill~~~~~~~ 700 (780)
T 1gm5_A 691 FLVVGDVGEE 700 (780)
T ss_dssp ECCCCSCCHH
T ss_pred EEEECCCChH
Confidence 9999854433
No 55
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.93 E-value=6.4e-26 Score=244.22 Aligned_cols=200 Identities=17% Similarity=0.214 Sum_probs=147.8
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhC-CCCCcEEEEeccCChhHHHHHHHhc
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQL-PKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~l-p~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
+.-+.+.|.|.+...+.+. ..+.++++|||||||++ +.++...+..+.... +..+|+++||||+++.+..+..
T Consensus 70 ~~~~~~~~~~~l~~~l~~~--~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~--- 143 (431)
T 2v6i_A 70 NEIVDFMCHSTFTMKLLQG--VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP--- 143 (431)
T ss_dssp CCSEEEEEHHHHHHHHHHT--CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC---
T ss_pred CceEEEEchHHHHHHHhcC--ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC---
Confidence 3456778999988777763 45689999999999997 555555555554442 5689999999999974221110
Q ss_pred CCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCC
Q 008461 87 KDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR 166 (564)
Q Consensus 87 ~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~ 166 (564)
.++..+.+. ...+ ..+...++.++... ++++||||+|++.++.+++.|... ++.+..+||+
T Consensus 144 ~~~~i~~~~---------------~~~~-~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~ 204 (431)
T 2v6i_A 144 SNSPIIDEE---------------TRIP-DKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRK 204 (431)
T ss_dssp CSSCCEEEE---------------CCCC-SSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTT
T ss_pred CCCceeecc---------------ccCC-HHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCc
Confidence 011000000 0011 11223334555554 579999999999999999999986 8999999997
Q ss_pred CCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcE-----------------EEEcCCCCCHhhHHHHhcccccCC
Q 008461 167 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDW-----------------VVQVDCPEDVASYIHRVGRTARYN 228 (564)
Q Consensus 167 m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~-----------------VI~~d~P~s~~~YiqRiGRtgR~g 228 (564)
.|..+++.|++ ...|||||+++++|||+ | +.+ ||+++.|.+..+|+||+||+||.|
T Consensus 205 ----~r~~~~~~f~~g~~~vLVaT~v~e~GiDi-p-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g 278 (431)
T 2v6i_A 205 ----TFESEYPKCKSEKWDFVITTDISEMGANF-K-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNP 278 (431)
T ss_dssp ----THHHHTTHHHHSCCSEEEECGGGGTSCCC-C-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred ----cHHHHHHhhcCCCCeEEEECchHHcCccc-C-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCC
Confidence 57789999999 99999999999999999 7 665 678899999999999999999998
Q ss_pred C-CceEEEEeC
Q 008461 229 S-GGRSVLFLT 238 (564)
Q Consensus 229 ~-~G~~il~l~ 238 (564)
. .|.++++..
T Consensus 279 ~~~~~~~~~~~ 289 (431)
T 2v6i_A 279 EKLGDIYAYSG 289 (431)
T ss_dssp TCCCCEEEECS
T ss_pred CCCCeEEEEcC
Confidence 5 566666653
No 56
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.93 E-value=3.8e-26 Score=247.24 Aligned_cols=215 Identities=17% Similarity=0.237 Sum_probs=159.4
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCCh-----------
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTK----------- 76 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~----------- 76 (564)
..+|+|+||+++..++... ..++++||+||||++...+|.. ++..++ ..+++++|||+..
T Consensus 171 ~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~~-~~~~l~lSATp~~~~~~~~~l~~~ 241 (472)
T 2fwr_A 171 LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFRLGLTATFEREDGRHEILKEV 241 (472)
T ss_dssp CCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTCC-CSEEEEEESCCCCTTSGGGSHHHH
T ss_pred cCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhcC-CCeEEEEecCccCCCCHHHHHHHH
Confidence 5789999999998776532 1468999999999999887764 555554 6889999999873
Q ss_pred --------hHHHHHHHhcCCCCcccccccc--c----------------------ccCCccceeEE--------------
Q 008461 77 --------SVQDLARLSLKDPQYLSVHEES--V----------------------TATPNRLQQTA-------------- 110 (564)
Q Consensus 77 --------~v~~l~~~~l~~p~~i~v~~~~--~----------------------~~~p~~l~q~~-------------- 110 (564)
....+...++..+.++.+.... . ...+..+.+.+
T Consensus 242 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (472)
T 2fwr_A 242 VGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALR 321 (472)
T ss_dssp TCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTH
T ss_pred hCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHH
Confidence 2333322223333222111000 0 00000111000
Q ss_pred -------EEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-c
Q 008461 111 -------MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 182 (564)
Q Consensus 111 -------~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~ 182 (564)
+.+....|+..|..++..+.+.++||||++...++.++..|. +..+||++++.+|..+++.|++ .
T Consensus 322 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-------~~~~~g~~~~~~R~~~~~~F~~g~ 394 (472)
T 2fwr_A 322 AWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-------IPAITHRTSREEREEILEGFRTGR 394 (472)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-------CCBCCSSSCSHHHHTHHHHHHHSS
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-------cceeeCCCCHHHHHHHHHHHhCCC
Confidence 113345688899999988888999999999999999998772 5679999999999999999999 9
Q ss_pred CCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCC-ceEEE--EeCc
Q 008461 183 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVL--FLTP 239 (564)
Q Consensus 183 ~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~-G~~il--~l~~ 239 (564)
..|||||+++++|+|+ |++++||++++|+++..|+||+||+||.|.. +.+++ |++.
T Consensus 395 ~~vLv~T~~~~~Gldl-p~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 395 FRAIVSSQVLDEGIDV-PDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CSBCBCSSCCCSSSCS-CCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred CCEEEEcCchhcCccc-ccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 9999999999999999 9999999999999999999999999999954 45444 4443
No 57
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.92 E-value=4.9e-25 Score=249.31 Aligned_cols=215 Identities=22% Similarity=0.285 Sum_probs=159.2
Q ss_pred EcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcc--cHHH----HHHHHHH------------------hCCCCCcEEE
Q 008461 14 CTPGRLLQHMDETPNFDCSQLQILILDEADRILDV--GFKK----ALNAIVS------------------QLPKHRQTFL 69 (564)
Q Consensus 14 ~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~--gf~~----~l~~Il~------------------~lp~~~Q~ll 69 (564)
+|||+|++++... .+|||||+|++++. ++.. .+..++. .++..+|+++
T Consensus 320 ~tpg~LlDyl~~~--------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~ 391 (661)
T 2d7d_A 320 STPYTLLDYFPDD--------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVY 391 (661)
T ss_dssp CCCBCGGGGSCSS--------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEE
T ss_pred CCccHHHHHcccC--------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEE
Confidence 8999999887543 28999999997743 1111 1111111 1124689999
Q ss_pred EeccCChhHHHHHHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHH
Q 008461 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYV 147 (564)
Q Consensus 70 fSATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l 147 (564)
||||++...... ........+.... ...| .+.+.+...++..|+..|... .+.++||||+|+..++.+
T Consensus 392 ~SAT~~~~~~~~----~~~~~~~~~r~~~-l~~p-----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L 461 (661)
T 2d7d_A 392 VSATPGPYEIEH----TDEMVEQIIRPTG-LLDP-----LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDL 461 (661)
T ss_dssp ECSSCCHHHHHH----CSSCEEECCCTTC-CCCC-----EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHH
T ss_pred EecCCChhHHHh----hhCeeeeeecccC-CCCC-----eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHH
Confidence 999998654222 0111001110000 0011 122334455666776666553 367999999999999999
Q ss_pred HHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCC-----CCCHhhHHHHh
Q 008461 148 FEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC-----PEDVASYIHRV 221 (564)
Q Consensus 148 ~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~-----P~s~~~YiqRi 221 (564)
++.|... |+.+..+||+|++.+|..+++.|+. ...|||||+++++|+|+ |+|++||++|. |.+..+|+||+
T Consensus 462 ~~~L~~~--gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDi-p~v~lVi~~d~d~~G~p~s~~~~iQr~ 538 (661)
T 2d7d_A 462 TDYLKEI--GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDI-PEVSLVAILDADKEGFLRSERSLIQTI 538 (661)
T ss_dssp HHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCC-TTEEEEEETTTTCCTTTTSHHHHHHHH
T ss_pred HHHHHhc--CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCccc-CCCCEEEEeCcccccCCCCHHHHHHHh
Confidence 9999985 8999999999999999999999999 89999999999999999 89999999998 99999999999
Q ss_pred cccccCCCCceEEEEeCcchHHHHHHHHH
Q 008461 222 GRTARYNSGGRSVLFLTPTEMKMLEKLRE 250 (564)
Q Consensus 222 GRtgR~g~~G~~il~l~~~e~~~l~~L~~ 250 (564)
|||||. ..|.+++|+++.+..+...+.+
T Consensus 539 GRagR~-~~G~~i~~~~~~~~~~~~~i~~ 566 (661)
T 2d7d_A 539 GRAARN-AEGRVIMYADKITKSMEIAINE 566 (661)
T ss_dssp HTTTTS-TTCEEEEECSSCCHHHHHHHHH
T ss_pred CcccCC-CCCEEEEEEeCCCHHHHHHHHH
Confidence 999998 7899999999988776666543
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.92 E-value=2e-25 Score=243.92 Aligned_cols=220 Identities=15% Similarity=0.193 Sum_probs=160.2
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHH-HHh
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLA-RLS 85 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~-~~~ 85 (564)
++++|+||||+.|... ....+.++++||+||||++.. ..+..++..+++..+++++|||++.....+. ...
T Consensus 203 ~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~ 274 (510)
T 2oca_A 203 NDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVG 274 (510)
T ss_dssp TTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHH
T ss_pred cCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHH
Confidence 5789999999987532 123467899999999999876 4577788888888999999999976643322 122
Q ss_pred cCCCCcccccccc----cccCCccceeEEEEcC---------------------cccHHHHHHHHHHHc---CCCcEEEE
Q 008461 86 LKDPQYLSVHEES----VTATPNRLQQTAMIVP---------------------LEQKLDMLWSFIKAH---LNSKILVF 137 (564)
Q Consensus 86 l~~p~~i~v~~~~----~~~~p~~l~q~~~~~~---------------------~~~Kl~~L~~~L~~~---~~~k~IVF 137 (564)
+.++..+.+.... ....+..+....+..+ ...+...+..++... ...++|||
T Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf 354 (510)
T 2oca_A 275 MFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMF 354 (510)
T ss_dssp HHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2233333222110 0111111111111111 122444555666554 34566666
Q ss_pred eCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEe-cccccCCCcCCCCcEEEEcCCCCCHh
Q 008461 138 LTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT-DVASRGLDFNKAVDWVVQVDCPEDVA 215 (564)
Q Consensus 138 ~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaT-dv~arGLD~pp~V~~VI~~d~P~s~~ 215 (564)
++ .+.+..+++.|... +..+..+||+|++.+|..+++.|++ ...||||| +++++|+|+ |+|++||++++|.++.
T Consensus 355 ~~-~~~~~~l~~~L~~~--~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDi-p~v~~vi~~~~~~s~~ 430 (510)
T 2oca_A 355 KH-VSHGKAIFDLIKNE--YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISV-KNLHHVVLAHGVKSKI 430 (510)
T ss_dssp SS-HHHHHHHHHHHHTT--CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCC-CSEEEEEESSCCCSCC
T ss_pred ec-HHHHHHHHHHHHHc--CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccc-ccCcEEEEeCCCCCHH
Confidence 66 88899999999885 4589999999999999999999999 89999999 999999999 8999999999999999
Q ss_pred hHHHHhcccccCCCCceEEEEeC
Q 008461 216 SYIHRVGRTARYNSGGRSVLFLT 238 (564)
Q Consensus 216 ~YiqRiGRtgR~g~~G~~il~l~ 238 (564)
.|+||+||+||.|..|.++++++
T Consensus 431 ~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 431 IVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHHhcccccCCCCceEEEEE
Confidence 99999999999998875566655
No 59
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.92 E-value=2.9e-25 Score=272.40 Aligned_cols=247 Identities=20% Similarity=0.290 Sum_probs=179.2
Q ss_pred ccCCCcEEEEcHHHHHHHHhcCCCC--CCCCcceEEEeccCccCcccHHHHHHHHHH-------hCCCCCcEEEEeccCC
Q 008461 5 HVNELNILVCTPGRLLQHMDETPNF--DCSQLQILILDEADRILDVGFKKALNAIVS-------QLPKHRQTFLFSATQT 75 (564)
Q Consensus 5 r~~~~~ILV~TPgrLl~~L~~~~~~--~~~~L~~lVlDEAD~lld~gf~~~l~~Il~-------~lp~~~Q~llfSATl~ 75 (564)
...+++||||||+++ +.|.+.... .++++++|||||+|.+.+ ..+..+..++. .+++..|+|++|||+|
T Consensus 178 ~~~~~~IlVtTpEkl-d~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~ 255 (1724)
T 4f92_B 178 EISATQIIVCTPEKW-DIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLP 255 (1724)
T ss_dssp TGGGCSEEEECHHHH-HHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCT
T ss_pred ccCCCCEEEECHHHH-HHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccC
Confidence 345789999999998 555444222 267899999999997766 56666665554 4577899999999999
Q ss_pred hhHHHHHHHhcCCCCc-ccccccccccCCccceeEEEEcCcccH---HHH----HHHHHHHc-CCCcEEEEeCChHHHHH
Q 008461 76 KSVQDLARLSLKDPQY-LSVHEESVTATPNRLQQTAMIVPLEQK---LDM----LWSFIKAH-LNSKILVFLTSCKQVKY 146 (564)
Q Consensus 76 ~~v~~l~~~~l~~p~~-i~v~~~~~~~~p~~l~q~~~~~~~~~K---l~~----L~~~L~~~-~~~k~IVF~~t~k~v~~ 146 (564)
+ ..+++.+...++.. +.+... ...|..+.+.++.+..... ... ++..+..+ .+.++||||+|++.|+.
T Consensus 256 N-~~dvA~wL~~~~~~~~~~~~~--~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~ 332 (1724)
T 4f92_B 256 N-YEDVATFLRVDPAKGLFYFDN--SFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGK 332 (1724)
T ss_dssp T-HHHHHHHTTCCHHHHEEECCG--GGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHH
T ss_pred C-HHHHHHHhCCCCCCCeEEECC--CCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHH
Confidence 7 56677654433211 111111 1234556666655544322 222 22333332 25789999999999888
Q ss_pred HHHHHHhhC-----------------------------------CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec
Q 008461 147 VFEAFKKLR-----------------------------------PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 190 (564)
Q Consensus 147 l~e~L~~l~-----------------------------------~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd 190 (564)
++..|.... -...+++|||+|++.+|..+.+.|++ ..+|||||+
T Consensus 333 ~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTs 412 (1724)
T 4f92_B 333 TARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTA 412 (1724)
T ss_dssp HHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECH
T ss_pred HHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcc
Confidence 887775421 02347899999999999999999999 999999999
Q ss_pred ccccCCCcCCCCcEEEE----cC------CCCCHhhHHHHhcccccCCC--CceEEEEeCcchHHHHHHHHHcCCCccc
Q 008461 191 VASRGLDFNKAVDWVVQ----VD------CPEDVASYIHRVGRTARYNS--GGRSVLFLTPTEMKMLEKLREAKIPIHF 257 (564)
Q Consensus 191 v~arGLD~pp~V~~VI~----~d------~P~s~~~YiqRiGRtgR~g~--~G~~il~l~~~e~~~l~~L~~~~i~i~~ 257 (564)
++++|||+ |++++||. |+ .|.++.+|+||+|||||.|. .|.++++..+.+...+..+.....|++.
T Consensus 413 TLa~GVNl-Pa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS 490 (1724)
T 4f92_B 413 TLAWGVNL-PAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIES 490 (1724)
T ss_dssp HHHHHSCC-CBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCC
T ss_pred hhHhhCCC-CCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchh
Confidence 99999999 98999885 44 35689999999999999874 7999999999888777777666666654
No 60
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=5.6e-27 Score=220.69 Aligned_cols=148 Identities=28% Similarity=0.434 Sum_probs=136.4
Q ss_pred cceeEEEEcCc-ccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-c
Q 008461 105 RLQQTAMIVPL-EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 182 (564)
Q Consensus 105 ~l~q~~~~~~~-~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~ 182 (564)
++.|.|+.++. ..|+..|..++....+.++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|++ .
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREA--GINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 56788888887 899999999998877889999999999999999999875 8899999999999999999999999 9
Q ss_pred CCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcchHHHHHHHHHc-CCCc
Q 008461 183 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPI 255 (564)
Q Consensus 183 ~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e~~~l~~L~~~-~i~i 255 (564)
..|||||+++++|+|+ |++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+..++..+.+. +.++
T Consensus 81 ~~vLvaT~~~~~Gid~-~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (170)
T 2yjt_D 81 VNVLVATDVAARGIDI-PDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 153 (170)
Confidence 9999999999999999 8999999999999999999999999999999999999999988888777664 4443
No 61
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.92 E-value=1e-24 Score=246.81 Aligned_cols=214 Identities=20% Similarity=0.213 Sum_probs=158.0
Q ss_pred EcHHHHHHHHhcCCCCCCCCcceEEEeccCccCccc--HH----HHHHHHHH------------------hCCCCCcEEE
Q 008461 14 CTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG--FK----KALNAIVS------------------QLPKHRQTFL 69 (564)
Q Consensus 14 ~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~g--f~----~~l~~Il~------------------~lp~~~Q~ll 69 (564)
+|||+|++++... .+|||||+|++++.. +. ..+..++. .++...|+++
T Consensus 314 ~tp~~LlDyl~~~--------~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~ 385 (664)
T 1c4o_A 314 EPPYTLLDYFPED--------FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVF 385 (664)
T ss_dssp SCCCCGGGGSCTT--------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEE
T ss_pred CCchHHHHHHhhc--------cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEE
Confidence 7899998876432 389999999876421 11 11111111 1124679999
Q ss_pred EeccCChhHHHHHHHhcCCCCcccccccccccCCccc-eeEEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHH
Q 008461 70 FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRL-QQTAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKY 146 (564)
Q Consensus 70 fSATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l-~q~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~ 146 (564)
||||++...... .. ..+.... .+..+ ...+.+.+...+...|...|... .+.++||||+|+..++.
T Consensus 386 ~SAT~~~~~~~~----~~--~~~~~~~-----r~~~l~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~ 454 (664)
T 1c4o_A 386 VSATPGPFELAH----SG--RVVEQII-----RPTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEE 454 (664)
T ss_dssp EESSCCHHHHHH----CS--EEEEECS-----CTTCCCCCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHH
T ss_pred EecCCCHHHHHh----hh--Ceeeeee-----ccCCCCCCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 999998654221 01 1111100 01001 11122334455666676666543 36899999999999999
Q ss_pred HHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCC-----CCCHhhHHHH
Q 008461 147 VFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC-----PEDVASYIHR 220 (564)
Q Consensus 147 l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~-----P~s~~~YiqR 220 (564)
+++.|... |+.+..+||+|++.+|..+++.|+. ...|||||+++++|+|+ |+|++||++|+ |.+..+|+||
T Consensus 455 L~~~L~~~--gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDi-p~v~lVI~~d~d~~G~p~s~~~~iQr 531 (664)
T 1c4o_A 455 LTSFLVEH--GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDI-PEVSLVAILDADKEGFLRSERSLIQT 531 (664)
T ss_dssp HHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCC-TTEEEEEETTTTSCSGGGSHHHHHHH
T ss_pred HHHHHHhc--CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccC-CCCCEEEEeCCcccCCCCCHHHHHHH
Confidence 99999985 8999999999999999999999999 89999999999999999 89999999998 9999999999
Q ss_pred hcccccCCCCceEEEEeCcchHHHHHHHHH
Q 008461 221 VGRTARYNSGGRSVLFLTPTEMKMLEKLRE 250 (564)
Q Consensus 221 iGRtgR~g~~G~~il~l~~~e~~~l~~L~~ 250 (564)
+|||||.| .|.+++|+++.+..+.+.+.+
T Consensus 532 ~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 532 IGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred HCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 99999995 899999999988777666644
No 62
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.91 E-value=5.2e-25 Score=248.87 Aligned_cols=228 Identities=17% Similarity=0.216 Sum_probs=163.0
Q ss_pred CCCcEEEEcHHHHHHHHhcCC-CCC-CCCcceEEEeccCccCcccHHHHHHHHHHhCC-CCCcEEEEeccCChhHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETP-NFD-CSQLQILILDEADRILDVGFKKALNAIVSQLP-KHRQTFLFSATQTKSVQDLAR 83 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~-~~~-~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp-~~~Q~llfSATl~~~v~~l~~ 83 (564)
++..++|+|||++.+++..+. .++ ...+++|||||||++++.+|+..+..++..++ ...|++++|||.+ .+..++.
T Consensus 211 G~~~~iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~i~~l~~ 289 (677)
T 3rc3_A 211 GEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID-LVMELMY 289 (677)
T ss_dssp SSCEECCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-HHHHHHH
T ss_pred CCeeEEecCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-HHHHHHH
Confidence 445566667776666554332 122 36779999999999999999999999999998 6789999999943 3444444
Q ss_pred HhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeec
Q 008461 84 LSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL 163 (564)
Q Consensus 84 ~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~l 163 (564)
.... + +.+... ....+ +. + ....- ..+... ....||||+|++.++.++..|... ++.+..+
T Consensus 290 ~~~~-~--~~v~~~-~r~~~--l~--~-~~~~l-------~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~--g~~v~~l 350 (677)
T 3rc3_A 290 TTGE-E--VEVRDY-KRLTP--IS--V-LDHAL-------ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIR--GLESAVI 350 (677)
T ss_dssp HHTC-C--EEEEEC-CCSSC--EE--E-CSSCC-------CSGGGC-CTTEEEECSSHHHHHHHHHHHHHT--TCCCEEE
T ss_pred hcCC-c--eEEEEe-eecch--HH--H-HHHHH-------HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhc--CCCeeee
Confidence 3322 1 111110 00011 10 0 00000 011111 455689999999999999999985 8999999
Q ss_pred cCCCCHHHHHHHHHHHhc---cCCeEEEecccccCCCcCCCCcEEEEcCC--------------CCCHhhHHHHhccccc
Q 008461 164 YGRMKQDRRMAIYAQFCE---KRSVLFCTDVASRGLDFNKAVDWVVQVDC--------------PEDVASYIHRVGRTAR 226 (564)
Q Consensus 164 Hg~m~~~~R~~i~~~F~~---~~~VLVaTdv~arGLD~pp~V~~VI~~d~--------------P~s~~~YiqRiGRtgR 226 (564)
||+|++.+|..++..|+. ..+|||||+++++|||+ + |++||++++ |.+..+|+||+|||||
T Consensus 351 HG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~-v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR 428 (677)
T 3rc3_A 351 YGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-S-IRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGR 428 (677)
T ss_dssp CTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-C-BSEEEESCSBC-----------CBCCHHHHHHHHTTBTC
T ss_pred eccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-C-ccEEEECCccccccccCCccccccCCHHHHHHHhcCCCC
Confidence 999999999999999996 47999999999999999 6 999999999 8899999999999999
Q ss_pred CCCC---ceEEEEeCcchHHHHHHHHHcC-CCccc
Q 008461 227 YNSG---GRSVLFLTPTEMKMLEKLREAK-IPIHF 257 (564)
Q Consensus 227 ~g~~---G~~il~l~~~e~~~l~~L~~~~-i~i~~ 257 (564)
.|.. |.|+ ++.+.+...+..+.... -++..
T Consensus 429 ~g~~g~~G~v~-~l~~~d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 429 FSSRFKEGEVT-TMNHEDLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp TTSSCSSEEEE-ESSTTHHHHHHHHHHSCCCCCCC
T ss_pred CCCCCCCEEEE-EEecchHHHHHHHHhcCcchhhh
Confidence 9965 5444 44555666666666653 34443
No 63
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.91 E-value=2.4e-24 Score=240.10 Aligned_cols=219 Identities=16% Similarity=0.180 Sum_probs=141.8
Q ss_pred CCCcEEEEcHHHHHHHHhcC---CCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDET---PNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLAR 83 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~---~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~ 83 (564)
.+.+|+|+||++|..++... ..+...++++||+||||++...+ ...+..++.+++ ..++++||||+......-..
T Consensus 273 ~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~~~l~lTATP~~~~~~~~~ 350 (590)
T 3h1t_A 273 KSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE-PAFQIGMTATPLREDNRDTY 350 (590)
T ss_dssp SSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHST-TSEEEEEESSCSCTTTHHHH
T ss_pred CCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC-cceEEEeccccccccchhHH
Confidence 47899999999998776422 23556789999999999987653 356788888887 57899999998754433222
Q ss_pred HhcCCCCcccccccc---cccCCccceeE---------------------------EEEcCc------ccHHHH----HH
Q 008461 84 LSLKDPQYLSVHEES---VTATPNRLQQT---------------------------AMIVPL------EQKLDM----LW 123 (564)
Q Consensus 84 ~~l~~p~~i~v~~~~---~~~~p~~l~q~---------------------------~~~~~~------~~Kl~~----L~ 123 (564)
..+..+.+....... ....|..+... |..... ..+... |.
T Consensus 351 ~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~ 430 (590)
T 3h1t_A 351 RYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLT 430 (590)
T ss_dssp HHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHH
T ss_pred HHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHH
Confidence 233333221100000 00000000000 000000 112222 33
Q ss_pred HHHHHc-CCCcEEEEeCChHHHHHHHHHHHhhCCC------CCeeeccCCCCHHHHHHHHHHHhc-cCC---eEEEeccc
Q 008461 124 SFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPG------IPLMCLYGRMKQDRRMAIYAQFCE-KRS---VLFCTDVA 192 (564)
Q Consensus 124 ~~L~~~-~~~k~IVF~~t~k~v~~l~e~L~~l~~g------i~v~~lHg~m~~~~R~~i~~~F~~-~~~---VLVaTdv~ 192 (564)
.++... ...++||||+++..++.+++.|....+. -.+..+||.+++ +|..+++.|++ ... |||||+++
T Consensus 431 ~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l 509 (590)
T 3h1t_A 431 DFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLL 509 (590)
T ss_dssp HHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTT
T ss_pred HHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChh
Confidence 334432 3579999999999999999999876432 237789999864 79999999998 655 88999999
Q ss_pred ccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCC
Q 008461 193 SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS 229 (564)
Q Consensus 193 arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~ 229 (564)
++|||+ |.|++||++++|.++..|+||+||+||.+.
T Consensus 510 ~~GiDi-p~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 510 TTGVDA-PTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTTCCC-TTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hcCccc-hheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 999999 899999999999999999999999999875
No 64
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.90 E-value=1.2e-23 Score=247.31 Aligned_cols=141 Identities=18% Similarity=0.298 Sum_probs=120.3
Q ss_pred cccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-c--CCeEEEecc
Q 008461 115 LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K--RSVLFCTDV 191 (564)
Q Consensus 115 ~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~--~~VLVaTdv 191 (564)
...|+..|..++....+.++||||+++..++.++..|... .|+.+..+||+|++.+|..+++.|++ . ..|||||++
T Consensus 487 ~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~-~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v 565 (968)
T 3dmq_A 487 FDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER-EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEI 565 (968)
T ss_dssp TSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT-TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCC
T ss_pred ccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecch
Confidence 4468899999999888899999999999999999999853 38999999999999999999999999 7 899999999
Q ss_pred cccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCc--chH-HHHHHHHHcCCCccc
Q 008461 192 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP--TEM-KMLEKLREAKIPIHF 257 (564)
Q Consensus 192 ~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~--~e~-~~l~~L~~~~i~i~~ 257 (564)
+++|||+ |.+++||+||+|+++..|+||+||+||.|+.|.++++... ... ..+..+...++.+..
T Consensus 566 ~~~GlDl-~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~ 633 (968)
T 3dmq_A 566 GSEGRNF-QFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFE 633 (968)
T ss_dssp TTCSSCC-TTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSS
T ss_pred hhcCCCc-ccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCcee
Confidence 9999999 8999999999999999999999999999999876666433 222 234444444555433
No 65
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.87 E-value=1.8e-21 Score=211.97 Aligned_cols=131 Identities=16% Similarity=0.188 Sum_probs=104.3
Q ss_pred cHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-c-CC-eEEEecc
Q 008461 117 QKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K-RS-VLFCTDV 191 (564)
Q Consensus 117 ~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~-~~-VLVaTdv 191 (564)
.|+..+..++... .+.++||||+++..+..++..|... .|+.+..+||++++.+|..+++.|++ . .. +|+||++
T Consensus 325 ~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~-~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~ 403 (500)
T 1z63_A 325 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKE-LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 403 (500)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHH-HTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCC
T ss_pred hhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHh-hCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccc
Confidence 4555666666654 4679999999999999999999863 27889999999999999999999998 3 43 8999999
Q ss_pred cccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceE--EEEeCcchH--HHHHHHH
Q 008461 192 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS--VLFLTPTEM--KMLEKLR 249 (564)
Q Consensus 192 ~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~--il~l~~~e~--~~l~~L~ 249 (564)
+++|||+ |++++||+||+|+++..|+||+||++|.|..+.+ +.|++.... .++..+.
T Consensus 404 ~~~Glnl-~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~ 464 (500)
T 1z63_A 404 GGFGINL-TSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLA 464 (500)
T ss_dssp C-CCCCC-TTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHT
T ss_pred ccCCCch-hhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHH
Confidence 9999999 8999999999999999999999999999987655 445555433 3444443
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.85 E-value=1.1e-20 Score=210.68 Aligned_cols=168 Identities=18% Similarity=0.191 Sum_probs=133.9
Q ss_pred cEEEEeccCChhHHHHHHHhcCCCCcccccccccccCCcccee-EEEEcCcccHHHHHHHHHHHc--CCCcEEEEeCChH
Q 008461 66 QTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQ-TAMIVPLEQKLDMLWSFIKAH--LNSKILVFLTSCK 142 (564)
Q Consensus 66 Q~llfSATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~p~~l~q-~~~~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k 142 (564)
.+.+||+|+......+...+.-+ ++.+... .+..+..+ ..+.+....|...+...+... .+.|+||||+|+.
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtn---kp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e 485 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYGME--VVVIPTH---KPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIE 485 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSCCC--EEECCCS---SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHH
T ss_pred HHeEECCCCchHHHHHHHHhCCe--EEEECCC---CCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHH
Confidence 57899999999888887776433 3333221 11122322 356677888999999988763 4789999999999
Q ss_pred HHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecccccCCCcCC--------CCcEEEEcCCCCCH
Q 008461 143 QVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNK--------AVDWVVQVDCPEDV 214 (564)
Q Consensus 143 ~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~arGLD~pp--------~V~~VI~~d~P~s~ 214 (564)
.++.++..|... |+++..+||++.+.+|..+...|+ ...|+||||+++||+|| + ++.+||+|++|.+.
T Consensus 486 ~sE~Ls~~L~~~--Gi~~~vLhgkq~~rE~~ii~~ag~-~g~VtVATdmAgRGtDI-~lg~~V~~~GglhVInte~Pes~ 561 (822)
T 3jux_A 486 KSELLSSMLKKK--GIPHQVLNAKYHEKEAEIVAKAGQ-KGMVTIATNMAGRGTDI-KLGPGVAELGGLCIIGTERHESR 561 (822)
T ss_dssp HHHHHHHHHHTT--TCCCEEECSCHHHHHHHHHHHHHS-TTCEEEEETTTTTTCCC-CCCTTTTTTTSCEEEESSCCSSH
T ss_pred HHHHHHHHHHHC--CCCEEEeeCCchHHHHHHHHhCCC-CCeEEEEcchhhCCcCc-cCCcchhhcCCCEEEecCCCCCH
Confidence 999999999985 999999999955555544443333 55799999999999999 6 56799999999999
Q ss_pred hhHHHHhcccccCCCCceEEEEeCcchH
Q 008461 215 ASYIHRVGRTARYNSGGRSVLFLTPTEM 242 (564)
Q Consensus 215 ~~YiqRiGRtgR~g~~G~~il~l~~~e~ 242 (564)
..|+||+|||||.|.+|.+++|++..|.
T Consensus 562 r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 562 RIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp HHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred HHHHHhhCccccCCCCeeEEEEechhHH
Confidence 9999999999999999999999998874
No 67
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.80 E-value=2.2e-18 Score=194.49 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=102.8
Q ss_pred HHHHHHHHHHH---cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCC---eEEEec
Q 008461 118 KLDMLWSFIKA---HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRS---VLFCTD 190 (564)
Q Consensus 118 Kl~~L~~~L~~---~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~---VLVaTd 190 (564)
|+..|..++.. ..+.++|||+++...++.+...|... |+.+..+||++++.+|..+++.|++ ... +|++|+
T Consensus 400 K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~--g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 400 KMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR--RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH--TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC--CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 44444444433 34789999999999999999999875 8999999999999999999999998 543 899999
Q ss_pred ccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCce--EEEEeCcc
Q 008461 191 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGR--SVLFLTPT 240 (564)
Q Consensus 191 v~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~--~il~l~~~ 240 (564)
++++|||+ +++++||+||+|+++..|.|++||++|.|.... ++.|++..
T Consensus 478 a~g~Glnl-~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 478 AGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp GSCTTCCC-TTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred cccCCccc-ccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999 899999999999999999999999999997654 44455554
No 68
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=8.6e-19 Score=202.37 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=111.1
Q ss_pred cHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cC---CeEEEec
Q 008461 117 QKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR---SVLFCTD 190 (564)
Q Consensus 117 ~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~---~VLVaTd 190 (564)
.|+..|..+|... .+.++|||+.....+..+...|... |+.+..+||++++.+|..+++.|+. .. .+|+||.
T Consensus 556 ~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ 633 (800)
T 3mwy_W 556 GKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK--GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR 633 (800)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH--TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHH
T ss_pred hHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecc
Confidence 3566667777654 3679999999999999999999875 9999999999999999999999998 44 4999999
Q ss_pred ccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCc--eEEEEeCcc--hHHHHHHHHHc
Q 008461 191 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG--RSVLFLTPT--EMKMLEKLREA 251 (564)
Q Consensus 191 v~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G--~~il~l~~~--e~~~l~~L~~~ 251 (564)
+++.|||+ +.+++||+||+|+++..++||+||+.|.|+.. .++.|++.. |..++..+..+
T Consensus 634 agg~GlNL-~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K 697 (800)
T 3mwy_W 634 AGGLGINL-MTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKK 697 (800)
T ss_dssp HHTTTCCC-TTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred cccCCCCc-cccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHH
Confidence 99999999 89999999999999999999999999999754 445566655 44466655443
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.79 E-value=7.8e-19 Score=206.40 Aligned_cols=237 Identities=14% Similarity=0.157 Sum_probs=154.2
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCC-CCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhH-------
Q 008461 7 NELNILVCTPGRLLQHMDETPNF-DCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSV------- 78 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~-~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v------- 78 (564)
.+++|+|+||++|..++.....+ .+....+||+||||++.. ...+..|+..+| ++++++||||+....
T Consensus 374 ~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~ 449 (1038)
T 2w00_A 374 DDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSET 449 (1038)
T ss_dssp SSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCC
T ss_pred CCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHHHHHHhCC-cccEEEEeCCccccccchhhhH
Confidence 46899999999999887654222 345778999999999653 345667788887 589999999987432
Q ss_pred -HH-------------HHHHhcCCCCcc---ccccccc--c-----cCCccceeEEEEcCcccHHHHHHHHH-H---Hc-
Q 008461 79 -QD-------------LARLSLKDPQYL---SVHEESV--T-----ATPNRLQQTAMIVPLEQKLDMLWSFI-K---AH- 129 (564)
Q Consensus 79 -~~-------------l~~~~l~~p~~i---~v~~~~~--~-----~~p~~l~q~~~~~~~~~Kl~~L~~~L-~---~~- 129 (564)
.. .......-|..+ .+...-. . .....+.+..... ...++..+...+ . ..
T Consensus 450 t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~-~~~ri~~I~~~Il~~~~~~~ 528 (1038)
T 2w00_A 450 TASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFL-HPMRIQEITQYILNNFRQKT 528 (1038)
T ss_dssp HHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTT-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhh
Confidence 11 111111111110 0000000 0 0000000000011 223344443322 2 11
Q ss_pred -------CCCcEEEEeCChHHHHHHHHHHHhhC----------CCCCe-eeccCC----------C----------CH--
Q 008461 130 -------LNSKILVFLTSCKQVKYVFEAFKKLR----------PGIPL-MCLYGR----------M----------KQ-- 169 (564)
Q Consensus 130 -------~~~k~IVF~~t~k~v~~l~e~L~~l~----------~gi~v-~~lHg~----------m----------~~-- 169 (564)
.+.++||||+|+..|..+++.|.... .++.+ .++||+ + ++
T Consensus 529 ~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~ 608 (1038)
T 2w00_A 529 HRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSA 608 (1038)
T ss_dssp TCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHH
T ss_pred hhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhH
Confidence 23589999999999999999998764 12444 456653 2 22
Q ss_pred ---------------------------HHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHh
Q 008461 170 ---------------------------DRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRV 221 (564)
Q Consensus 170 ---------------------------~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRi 221 (564)
..|..++.+|++ ..+|||+|+++.+|+|+ |.+ .|+.+|.|.+...|+||+
T Consensus 609 r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDi-P~l-~tlylDkpl~~~~liQaI 686 (1038)
T 2w00_A 609 KEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDA-PTL-NTLFVDKNLRYHGLMQAF 686 (1038)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCC-TTE-EEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCc-ccc-cEEEEccCCCccceeehh
Confidence 248889999999 99999999999999999 888 788999999999999999
Q ss_pred cccccCCCC----ceEEEEeCcchHHHHHHHHHc
Q 008461 222 GRTARYNSG----GRSVLFLTPTEMKMLEKLREA 251 (564)
Q Consensus 222 GRtgR~g~~----G~~il~l~~~e~~~l~~L~~~ 251 (564)
|||+|.+.. |.++.|+.. ...+...|...
T Consensus 687 GRtnR~~~~~K~~G~IVdf~~~-~~~l~~Al~~y 719 (1038)
T 2w00_A 687 SRTNRIYDATKTFGNIVTFRDL-ERSTIDAITLF 719 (1038)
T ss_dssp HTTCCCCCTTCCSEEEEESSCC-HHHHHHHHHHT
T ss_pred hccCcCCCCCCCcEEEEEcccc-HHHHHHHHHHH
Confidence 999998764 777776653 33455566544
No 70
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.74 E-value=9e-18 Score=170.07 Aligned_cols=126 Identities=16% Similarity=0.179 Sum_probs=97.9
Q ss_pred cCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc--cCC-eEE
Q 008461 113 VPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRS-VLF 187 (564)
Q Consensus 113 ~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~--~~~-VLV 187 (564)
.....|+..|..+|... .+.++||||++...+..+...|... .|+.+..+||++++.+|..+++.|++ ... +|+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~-~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~ 170 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKE-LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVL 170 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHH-HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHh-cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEE
Confidence 34567999999999876 5789999999999999999999763 27889999999999999999999998 345 799
Q ss_pred EecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceE--EEEeCcc
Q 008461 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS--VLFLTPT 240 (564)
Q Consensus 188 aTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~--il~l~~~ 240 (564)
||+++++|||+ +++++||+||+|+++..|+||+||++|.|+.+.+ +.|++..
T Consensus 171 st~~~g~Glnl-~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 171 SVKAGGFGINL-TSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp ECCTTCCCCCC-TTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred ehhhhcCCcCc-ccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999 8999999999999999999999999999987654 5556554
No 71
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=149.00 Aligned_cols=90 Identities=29% Similarity=0.439 Sum_probs=83.2
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCc-ccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld-~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
..+++|+|||||+|++++.+...++++++++|||||||+|++ +||...+..|+..+++.+|+++||||+++.+..+++.
T Consensus 208 ~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~ 287 (300)
T 3fmo_B 208 KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQK 287 (300)
T ss_dssp CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHH
Confidence 356899999999999999876678889999999999999998 7999999999999999999999999999999999999
Q ss_pred hcCCCCccccc
Q 008461 85 SLKDPQYLSVH 95 (564)
Q Consensus 85 ~l~~p~~i~v~ 95 (564)
++.+|.+|.+.
T Consensus 288 ~l~~p~~i~~~ 298 (300)
T 3fmo_B 288 VVPDPNVIKLK 298 (300)
T ss_dssp HSSSCEEEEEC
T ss_pred HCCCCeEEEec
Confidence 99999888664
No 72
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.47 E-value=4.3e-14 Score=139.52 Aligned_cols=89 Identities=37% Similarity=0.571 Sum_probs=82.1
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+++|+|||||+|++++... .+.+.++++||+||||+++++||...+..|+..+++.+|+++||||+|+.+..+++.++
T Consensus 151 ~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l 229 (242)
T 3fe2_A 151 RGVEICIATPGRLIDFLECG-KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 229 (242)
T ss_dssp HCCSEEEECHHHHHHHHHHT-SCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHC
T ss_pred CCCCEEEECHHHHHHHHHcC-CCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHC
Confidence 36899999999999999765 56789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccc
Q 008461 87 KDPQYLSVHE 96 (564)
Q Consensus 87 ~~p~~i~v~~ 96 (564)
++|..|.+..
T Consensus 230 ~~~~~i~~~~ 239 (242)
T 3fe2_A 230 KDYIHINIGA 239 (242)
T ss_dssp SSCEEEEECC
T ss_pred CCCEEEEecC
Confidence 9998887654
No 73
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.46 E-value=5.4e-14 Score=137.82 Aligned_cols=90 Identities=70% Similarity=1.118 Sum_probs=83.4
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHh
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
+++++|+|||||+|++++.....+.+.++++||+||||++++++|...+..++..+++.+|+++||||+++.+..+++.+
T Consensus 144 ~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 144 INNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp HTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred CCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 45789999999999999987766778999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccc
Q 008461 86 LKDPQYLSVH 95 (564)
Q Consensus 86 l~~p~~i~v~ 95 (564)
+.+|.++.+.
T Consensus 224 ~~~p~~i~~~ 233 (236)
T 2pl3_A 224 LKNPEYVWVH 233 (236)
T ss_dssp CSSCEEEECC
T ss_pred CCCCEEEEeC
Confidence 9999888664
No 74
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.45 E-value=8.1e-14 Score=135.86 Aligned_cols=87 Identities=33% Similarity=0.524 Sum_probs=80.0
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+++|+|||||+|++++... .+.++++++||+||||++++++|...+..++..+++++|+++||||+|+.+..++..++
T Consensus 142 ~~~~iiv~Tp~~l~~~~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l 220 (228)
T 3iuy_A 142 KGVDIIIATPGRLNDLQMNN-SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYL 220 (228)
T ss_dssp SCCSEEEECHHHHHHHHHTT-CCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTC
T ss_pred CCCCEEEECHHHHHHHHHcC-CcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHC
Confidence 46899999999999888765 56789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccc
Q 008461 87 KDPQYLSV 94 (564)
Q Consensus 87 ~~p~~i~v 94 (564)
.+|.+|.+
T Consensus 221 ~~p~~i~v 228 (228)
T 3iuy_A 221 KDPMIVYV 228 (228)
T ss_dssp SSCEEEEC
T ss_pred CCCEEEeC
Confidence 99987643
No 75
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.43 E-value=1.4e-13 Score=136.99 Aligned_cols=88 Identities=44% Similarity=0.791 Sum_probs=82.2
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
++++|+|||||+|++++.+...+.+.++++||+||||++++++|...+..|+..+++.+|+++||||++..+..+++.++
T Consensus 160 ~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l 239 (249)
T 3ber_A 160 KKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAAL 239 (249)
T ss_dssp TCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHC
T ss_pred CCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHC
Confidence 57899999999999999876667789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccc
Q 008461 87 KDPQYLSV 94 (564)
Q Consensus 87 ~~p~~i~v 94 (564)
.+|..|.+
T Consensus 240 ~~p~~i~v 247 (249)
T 3ber_A 240 KNPVKCAV 247 (249)
T ss_dssp SSCEEEEC
T ss_pred CCCEEEEe
Confidence 99987755
No 76
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.4e-13 Score=137.86 Aligned_cols=84 Identities=61% Similarity=0.945 Sum_probs=78.1
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+++|+|||||+|++++.....+.+.++++|||||||+++++||...+..|+..++..+|+++||||+++.+..+++.++
T Consensus 175 ~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 175 NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp HCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHC
T ss_pred CCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHc
Confidence 35899999999999999887777889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 008461 87 KDPQ 90 (564)
Q Consensus 87 ~~p~ 90 (564)
+++.
T Consensus 255 ~~~~ 258 (262)
T 3ly5_A 255 KKEP 258 (262)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 77
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.41 E-value=2.8e-13 Score=133.27 Aligned_cols=87 Identities=30% Similarity=0.507 Sum_probs=79.0
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhcC
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK 87 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l~ 87 (564)
.++|+|||||+|++++... .+.+.++++||+||||++++++|...+..++..++..+|+++||||+++.+..+++.++.
T Consensus 149 ~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~ 227 (237)
T 3bor_A 149 APHIVVGTPGRVFDMLNRR-YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMR 227 (237)
T ss_dssp CCSEEEECHHHHHHHHHTT-SSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCS
T ss_pred CCCEEEECHHHHHHHHHhC-CcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCC
Confidence 4899999999999988765 566889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccc
Q 008461 88 DPQYLSVH 95 (564)
Q Consensus 88 ~p~~i~v~ 95 (564)
+|..|.+.
T Consensus 228 ~p~~i~v~ 235 (237)
T 3bor_A 228 DPIRILVK 235 (237)
T ss_dssp SCEEEC--
T ss_pred CCEEEEec
Confidence 99887653
No 78
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.40 E-value=3e-13 Score=134.10 Aligned_cols=100 Identities=34% Similarity=0.592 Sum_probs=79.3
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHh--CCC--CCcEEEEeccCChhHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ--LPK--HRQTFLFSATQTKSVQDLA 82 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~--lp~--~~Q~llfSATl~~~v~~l~ 82 (564)
.+++|+|||||+|++++... .+.+.++++||+||||++++++|...+..|+.. ++. .+|+++||||+++.+..++
T Consensus 149 ~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~ 227 (253)
T 1wrb_A 149 MGCHLLVATPGRLVDFIEKN-KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLA 227 (253)
T ss_dssp SCCSEEEECHHHHHHHHHTT-SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHcC-CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHH
Confidence 47899999999999998775 466899999999999999999999999999995 454 7899999999999999999
Q ss_pred HHhcCCCCcccccccccccCCccceeE
Q 008461 83 RLSLKDPQYLSVHEESVTATPNRLQQT 109 (564)
Q Consensus 83 ~~~l~~p~~i~v~~~~~~~~p~~l~q~ 109 (564)
+.++.+|..+.+.... .+..+++|.
T Consensus 228 ~~~l~~~~~i~~~~~~--~~~~~i~q~ 252 (253)
T 1wrb_A 228 ADFLYNYIFMTVGRVG--STSDSIKQE 252 (253)
T ss_dssp HHHCSSCEEEEEC--------------
T ss_pred HHHcCCCEEEEECCCC--CCcCCceec
Confidence 9999999888775443 234455543
No 79
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.39 E-value=3.3e-13 Score=130.85 Aligned_cols=89 Identities=31% Similarity=0.596 Sum_probs=80.8
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+++|+|||||+|.+++... .+.+.++++||+||||++++++|...+..++..+++..|+++||||++..+..+++.++
T Consensus 125 ~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 203 (219)
T 1q0u_A 125 VQPHIVIGTPGRINDFIREQ-ALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYM 203 (219)
T ss_dssp SCCSEEEECHHHHHHHHHTT-CCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHC
T ss_pred CCCCEEEeCHHHHHHHHHcC-CCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHc
Confidence 36899999999999988765 56678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccc
Q 008461 87 KDPQYLSVHE 96 (564)
Q Consensus 87 ~~p~~i~v~~ 96 (564)
.+|..+.+..
T Consensus 204 ~~p~~~~~~~ 213 (219)
T 1q0u_A 204 ENPTFVHVLE 213 (219)
T ss_dssp SSCEEEECC-
T ss_pred CCCeEEEeec
Confidence 9998876643
No 80
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.39 E-value=7.8e-13 Score=126.39 Aligned_cols=85 Identities=33% Similarity=0.601 Sum_probs=78.1
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
++++|+|+||++|.+++... .+.+.++++||+||||++++++|...+..++..+++..|+++||||+|..+..+++.++
T Consensus 121 ~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l 199 (206)
T 1vec_A 121 DTVHVVIATPGRILDLIKKG-VAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHL 199 (206)
T ss_dssp SCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHC
T ss_pred CCCCEEEeCHHHHHHHHHcC-CcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHc
Confidence 47899999999999888765 56688999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 008461 87 KDPQYL 92 (564)
Q Consensus 87 ~~p~~i 92 (564)
.+|..|
T Consensus 200 ~~p~~i 205 (206)
T 1vec_A 200 EKPYEI 205 (206)
T ss_dssp SSCEEE
T ss_pred CCCeEe
Confidence 998654
No 81
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.38 E-value=1.4e-11 Score=140.26 Aligned_cols=128 Identities=22% Similarity=0.266 Sum_probs=97.6
Q ss_pred EcCcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHh------------------------------------
Q 008461 112 IVPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKK------------------------------------ 153 (564)
Q Consensus 112 ~~~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~------------------------------------ 153 (564)
......|+.++..-+... .+.|+||+|.|....+.|+..|..
T Consensus 422 y~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (997)
T 2ipc_A 422 YRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLER 501 (997)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSS
T ss_pred EcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhc
Confidence 345567888887766543 379999999999999999999981
Q ss_pred --------------------------------------hCCCCCeeeccCCCCHHHHH-HHHHHHhccCCeEEEeccccc
Q 008461 154 --------------------------------------LRPGIPLMCLYGRMKQDRRM-AIYAQFCEKRSVLFCTDVASR 194 (564)
Q Consensus 154 --------------------------------------l~~gi~v~~lHg~m~~~~R~-~i~~~F~~~~~VLVaTdv~ar 194 (564)
+..|++.-+|++... +|. .|+.+--....|-|||++|+|
T Consensus 502 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~h--e~EAeIIAqAG~~GaVTIATNMAGR 579 (997)
T 2ipc_A 502 PAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHH--AREAEIVAQAGRSKTVTIATNMAGR 579 (997)
T ss_dssp STTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSH--HHHHHHHHTTTSTTCEEEECSSTTT
T ss_pred cccccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccch--HHHHHHHHhcCCCCeEEEEecccCC
Confidence 013566666776533 333 333332226789999999999
Q ss_pred CCCcCCCC------------------c-----------------------------------------------------
Q 008461 195 GLDFNKAV------------------D----------------------------------------------------- 203 (564)
Q Consensus 195 GLD~pp~V------------------~----------------------------------------------------- 203 (564)
|.||.-+= .
T Consensus 580 GTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~G 659 (997)
T 2ipc_A 580 GTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALG 659 (997)
T ss_dssp TSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcC
Confidence 99994330 1
Q ss_pred --EEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCcch
Q 008461 204 --WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 241 (564)
Q Consensus 204 --~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~~e 241 (564)
+||....+.|..-=.|-.||+||.|.+|.+.+|++-.+
T Consensus 660 GLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 660 GLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp CCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred CeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 89999999999999999999999999999999987654
No 82
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.38 E-value=2.9e-13 Score=132.48 Aligned_cols=88 Identities=30% Similarity=0.545 Sum_probs=79.8
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCccc-HHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 6 VNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVG-FKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~g-f~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
+.+++|+|+|||+|.+++... .+.+.++++||+||||+++++| |...+..|+..++..+|+++||||+++.+..++..
T Consensus 140 ~~~~~Iiv~Tp~~l~~~~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~ 218 (230)
T 2oxc_A 140 LKKCHIAVGSPGRIKQLIELD-YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTK 218 (230)
T ss_dssp TTSCSEEEECHHHHHHHHHTT-SSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTT
T ss_pred ccCCCEEEECHHHHHHHHhcC-CcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHH
Confidence 357899999999999988765 5667899999999999999998 99999999999999999999999999999999999
Q ss_pred hcCCCCcccc
Q 008461 85 SLKDPQYLSV 94 (564)
Q Consensus 85 ~l~~p~~i~v 94 (564)
++.+|.+|.+
T Consensus 219 ~~~~p~~i~~ 228 (230)
T 2oxc_A 219 YMRDPTFVRL 228 (230)
T ss_dssp TCSSCEEECC
T ss_pred HcCCCeEEEc
Confidence 9999987755
No 83
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.38 E-value=5.6e-13 Score=127.31 Aligned_cols=87 Identities=37% Similarity=0.609 Sum_probs=80.0
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
.+++|+|+||++|++++... .+.+.++++||+||||++++++|...+..++..+++.+|+++||||+++.+..+++.++
T Consensus 119 ~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 197 (207)
T 2gxq_A 119 RGADAVVATPGRALDYLRQG-VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYM 197 (207)
T ss_dssp HCCSEEEECHHHHHHHHHHT-SSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC
T ss_pred CCCCEEEECHHHHHHHHHcC-CcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHc
Confidence 46899999999999988775 56789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccc
Q 008461 87 KDPQYLSV 94 (564)
Q Consensus 87 ~~p~~i~v 94 (564)
.+|..+.+
T Consensus 198 ~~p~~i~~ 205 (207)
T 2gxq_A 198 KNPVLINV 205 (207)
T ss_dssp SSCEEEEC
T ss_pred CCCeEEEc
Confidence 99987754
No 84
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.37 E-value=9.7e-13 Score=129.61 Aligned_cols=91 Identities=27% Similarity=0.519 Sum_probs=79.5
Q ss_pred cCCCcEEEEcHHHHHHHHhcCC-CCCCCCcceEEEeccCccCc---ccHHHHHHHHHHhCC-CCCcEEEEeccCChhHHH
Q 008461 6 VNELNILVCTPGRLLQHMDETP-NFDCSQLQILILDEADRILD---VGFKKALNAIVSQLP-KHRQTFLFSATQTKSVQD 80 (564)
Q Consensus 6 ~~~~~ILV~TPgrLl~~L~~~~-~~~~~~L~~lVlDEAD~lld---~gf~~~l~~Il~~lp-~~~Q~llfSATl~~~v~~ 80 (564)
.++++|+|||||+|.+++.... .+.+.++++||+||||++++ .+|...+..++..+. ...|+++||||+|+.+..
T Consensus 147 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~ 226 (245)
T 3dkp_A 147 SKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQ 226 (245)
T ss_dssp CCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHH
T ss_pred cCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHH
Confidence 4578999999999999997764 56789999999999999998 579999999988764 578999999999999999
Q ss_pred HHHHhcCCCCcccccc
Q 008461 81 LARLSLKDPQYLSVHE 96 (564)
Q Consensus 81 l~~~~l~~p~~i~v~~ 96 (564)
+++.++.+|..+.+..
T Consensus 227 ~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 227 WCKLNLDNVISVSIGA 242 (245)
T ss_dssp HHHHHSSSCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 9999999999887654
No 85
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.36 E-value=9.4e-13 Score=127.63 Aligned_cols=89 Identities=31% Similarity=0.589 Sum_probs=79.8
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHhc
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSL 86 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~l 86 (564)
..++|+|+||++|++++... .+.+.++++||+||||++++++|...+..++..+++..|+++||||+++.+..+++.++
T Consensus 130 ~~~~iiv~Tp~~l~~~~~~~-~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~ 208 (224)
T 1qde_A 130 RDAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFM 208 (224)
T ss_dssp TTCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHC
T ss_pred CCCCEEEECHHHHHHHHHhC-CcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHC
Confidence 45899999999999988765 56688999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccc
Q 008461 87 KDPQYLSVHE 96 (564)
Q Consensus 87 ~~p~~i~v~~ 96 (564)
.+|..+.+..
T Consensus 209 ~~p~~i~~~~ 218 (224)
T 1qde_A 209 RNPVRILVKK 218 (224)
T ss_dssp SSCEEEC---
T ss_pred CCCEEEEecC
Confidence 9998886653
No 86
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.32 E-value=1.8e-12 Score=125.39 Aligned_cols=86 Identities=29% Similarity=0.554 Sum_probs=77.5
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCc-ccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHHh
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILD-VGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLS 85 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld-~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~~ 85 (564)
+.++|+|+||++|+.++... .+.+.++++||+||||++++ .+|...+..++..+++.+|+++||||+++.+..+++.+
T Consensus 133 ~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 211 (220)
T 1t6n_A 133 NCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 211 (220)
T ss_dssp SCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTT
T ss_pred CCCCEEEeCHHHHHHHHHhC-CCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHH
Confidence 35799999999999888765 56789999999999999987 68999999999999999999999999999999999999
Q ss_pred cCCCCccc
Q 008461 86 LKDPQYLS 93 (564)
Q Consensus 86 l~~p~~i~ 93 (564)
+.+|..|.
T Consensus 212 ~~~p~~i~ 219 (220)
T 1t6n_A 212 MQDPMEIF 219 (220)
T ss_dssp CSSCEEEE
T ss_pred cCCCeEEe
Confidence 99997664
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.10 E-value=6.7e-11 Score=130.65 Aligned_cols=102 Identities=17% Similarity=0.247 Sum_probs=65.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEE--EecccccCCCcCCC----Cc
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLF--CTDVASRGLDFNKA----VD 203 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLV--aTdv~arGLD~pp~----V~ 203 (564)
.++.+||||+|...++.+++.+.. .++ ..+|.. ..|..+++.|+....||| ||+.+++|||| |+ ++
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~----~~~-~~q~~~--~~~~~~l~~f~~~~~il~~V~~~~~~EGiD~-~~~~~~~~ 454 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG----IPV-IEENKK--TRHEEVLELMKTGKYLVMLVMRAKESEGVEF-REKENLFE 454 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT----SCE-EESTTT--CCHHHHHHHHHTSCCEEEEEC----------------CEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc----Cce-EecCCC--CcHHHHHHHHhcCCeEEEEEecCceecceec-CCCccccc
Confidence 467999999999999999887643 343 456654 468899999988557888 88999999999 65 89
Q ss_pred EEEEcCCCCC-H-----------------------------hhHHHHhcccccCCCCceEEEEeCc
Q 008461 204 WVVQVDCPED-V-----------------------------ASYIHRVGRTARYNSGGRSVLFLTP 239 (564)
Q Consensus 204 ~VI~~d~P~s-~-----------------------------~~YiqRiGRtgR~g~~G~~il~l~~ 239 (564)
+||++++|.. + ..+.|.+||+-|....--+++++.+
T Consensus 455 ~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 455 SLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 9999999841 1 2456889999997543223445544
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.03 E-value=3.1e-10 Score=111.53 Aligned_cols=77 Identities=25% Similarity=0.419 Sum_probs=63.6
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCcc-CcccHH-HHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRI-LDVGFK-KALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~l-ld~gf~-~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
.+++|+|||||+|++++.. .++++++|||||||++ ++++|. ..+..++...+ +.|+++||||++... +++.
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~--~~~~ 226 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSM--FCEY 226 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHH--HHHH
T ss_pred CCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHH--HHHH
Confidence 4688999999999999976 3689999999999986 888887 56777777765 799999999999876 6666
Q ss_pred hcCCCC
Q 008461 85 SLKDPQ 90 (564)
Q Consensus 85 ~l~~p~ 90 (564)
+...|.
T Consensus 227 ~~~~pv 232 (235)
T 3llm_A 227 FFNCPI 232 (235)
T ss_dssp TTSCCC
T ss_pred cCCCCE
Confidence 655553
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.82 E-value=1.2e-07 Score=104.71 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=57.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEe--cccccCCCcCC-----C
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT--DVASRGLDFNK-----A 201 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaT--dv~arGLD~pp-----~ 201 (564)
.++.++|||+|....+.+++. .+.+++.-..+++ +...++.|+. ...||+|| ..++.|||| | .
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~-----~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~-~d~~g~~ 462 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR-----ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIEL-RNNDRSL 462 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT-----CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCC-EETTEES
T ss_pred CCCCEEEEecCHHHHHHHHHh-----cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccc-cccCCcc
Confidence 367999999999999998872 3555655444555 3556777866 66899999 699999999 6 5
Q ss_pred CcEEEEcCCCC
Q 008461 202 VDWVVQVDCPE 212 (564)
Q Consensus 202 V~~VI~~d~P~ 212 (564)
+++||...+|.
T Consensus 463 l~~viI~~lPf 473 (551)
T 3crv_A 463 ISDVVIVGIPY 473 (551)
T ss_dssp EEEEEEESCCC
T ss_pred eeEEEEEcCCC
Confidence 89999999874
No 90
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.42 E-value=1.5e-07 Score=89.50 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=43.0
Q ss_pred CCcEEEEcHHHHHHHHhcCCC-----CCCCCcceEEEeccCccCcccHHHHH-HHHHHhC-------------CCCCcEE
Q 008461 8 ELNILVCTPGRLLQHMDETPN-----FDCSQLQILILDEADRILDVGFKKAL-NAIVSQL-------------PKHRQTF 68 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~-----~~~~~L~~lVlDEAD~lld~gf~~~l-~~Il~~l-------------p~~~Q~l 68 (564)
+++|+|+||++|..++..... +.+.++.+|||||||++++.++...+ ..++... .+..+++
T Consensus 132 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 211 (216)
T 3b6e_A 132 SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQIL 211 (216)
T ss_dssp HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE
T ss_pred CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEE
Confidence 488999999999998876532 55788999999999999887654443 3333222 1578999
Q ss_pred EEecc
Q 008461 69 LFSAT 73 (564)
Q Consensus 69 lfSAT 73 (564)
++|||
T Consensus 212 ~lSAT 216 (216)
T 3b6e_A 212 GLTAS 216 (216)
T ss_dssp EEECC
T ss_pred EeecC
Confidence 99998
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.19 E-value=7e-07 Score=89.68 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=53.9
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHHHH
Q 008461 7 NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLA 82 (564)
Q Consensus 7 ~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~ 82 (564)
.+.+|+|+||+++.... ...+.++++||+||||++.. ..+..++..++...+++++|||+++....+.
T Consensus 203 ~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~~~~~ 270 (282)
T 1rif_A 203 NDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGKANIM 270 (282)
T ss_dssp TTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCCTTSTTHH
T ss_pred cCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCCCcchHHH
Confidence 57899999999885432 12357889999999999874 3778888888789999999999987654443
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.89 E-value=8.2e-05 Score=83.34 Aligned_cols=111 Identities=14% Similarity=0.244 Sum_probs=72.5
Q ss_pred HHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec--ccccCCCcC
Q 008461 122 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD--VASRGLDFN 199 (564)
Q Consensus 122 L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd--v~arGLD~p 199 (564)
|..++... ++.++|||+|....+.+++.+.. +..- ..-+++...|..+++.|+....|||||. .++.||||
T Consensus 440 i~~l~~~~-~g~~lvlF~Sy~~l~~v~~~l~~----~~~~-~~q~~~~~~~~~ll~~f~~~~~vL~~v~~gsf~EGiD~- 512 (620)
T 4a15_A 440 IEDIILKV-KKNTIVYFPSYSLMDRVENRVSF----EHMK-EYRGIDQKELYSMLKKFRRDHGTIFAVSGGRLSEGINF- 512 (620)
T ss_dssp HHHHHHHH-CSCEEEEESCHHHHHHHTSSCCS----CCEE-CCTTCCSHHHHHHHHHHTTSCCEEEEETTSCC-------
T ss_pred HHHHHHhC-CCCEEEEeCCHHHHHHHHHHHHh----cchh-ccCCCChhHHHHHHHHhccCCcEEEEEecCceeccccC-
Confidence 33444333 67899999999999999887752 1112 4445566789999999996668999985 89999999
Q ss_pred CC--CcEEEEcCCCCC-------------------H----------hhHHHHhcccccCCCCceEEEEeCc
Q 008461 200 KA--VDWVVQVDCPED-------------------V----------ASYIHRVGRTARYNSGGRSVLFLTP 239 (564)
Q Consensus 200 p~--V~~VI~~d~P~s-------------------~----------~~YiqRiGRtgR~g~~G~~il~l~~ 239 (564)
|+ ..+||...+|.. . ....|-+||.=|....--+++++.+
T Consensus 513 ~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 513 PGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp --CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 65 679999998842 1 1236889999897654444555544
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.66 E-value=6e-05 Score=73.98 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=46.6
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChh
Q 008461 8 ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKS 77 (564)
Q Consensus 8 ~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~ 77 (564)
..+|+|+||+++...+... ..++++|||||||++.+..|. .++..++ ..+++++|||++..
T Consensus 171 ~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 171 LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLTATFERE 231 (237)
T ss_dssp CCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEEEESCC--
T ss_pred cCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEEecCCCCC
Confidence 5789999999998766532 245899999999999887654 3555565 67899999998754
No 94
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.29 E-value=0.024 Score=58.23 Aligned_cols=122 Identities=10% Similarity=0.065 Sum_probs=83.7
Q ss_pred CcccHHHHHHHHHHHc--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec
Q 008461 114 PLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 190 (564)
Q Consensus 114 ~~~~Kl~~L~~~L~~~--~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd 190 (564)
....|+..|-.+|... .+.+++||++..+..+.+-.++.. .++....+-|.....++ .. .+ ...|.+.|.
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~--~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Llts 178 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLG--NKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSS 178 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTT--SSCEEEESSSCCC------------CCSEEEEEEES
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhc--CCCceEeCCCCchhhhh-hc----ccCCceEEEEEC
Confidence 3567888887777654 367999999999999999888865 58888999998544321 11 23 444444466
Q ss_pred ccccCCC-----cCCCCcEEEEcCCCCCHhhH-HHHhcccccCC----CCceEEEEeCcchHH
Q 008461 191 VASRGLD-----FNKAVDWVVQVDCPEDVASY-IHRVGRTARYN----SGGRSVLFLTPTEMK 243 (564)
Q Consensus 191 v~arGLD-----~pp~V~~VI~~d~P~s~~~Y-iqRiGRtgR~g----~~G~~il~l~~~e~~ 243 (564)
..+-|++ + .+.+.||.||.-+++..= +|.+-|+.|.| +.-.++-+++.+..+
T Consensus 179 ag~~gin~~~~nl-~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 179 EGINFTKYPIKSK-ARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp SCCCTTTSCCCCC-SCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCCCCcCcccccC-CCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 6666676 5 679999999999999984 88887777763 345677777766554
No 95
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.48 E-value=0.28 Score=56.11 Aligned_cols=80 Identities=11% Similarity=0.112 Sum_probs=68.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc-ccCCCcCCCCcEEE
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA-SRGLDFNKAVDWVV 206 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~-arGLD~pp~V~~VI 206 (564)
+.+++|.++|+.-+..+++.|..+.+ ++.+..+||+++..+|..++..+.+ ...|+|+|... ...+.+ ..+.+||
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~-~~l~lVV 495 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHF-KNLGLVI 495 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCC-SCCCEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhc-cCCceEE
Confidence 57999999999999999999887654 6889999999999999999999998 89999999743 446788 8899988
Q ss_pred EcCCC
Q 008461 207 QVDCP 211 (564)
Q Consensus 207 ~~d~P 211 (564)
.=.+-
T Consensus 496 IDEaH 500 (780)
T 1gm5_A 496 IDEQH 500 (780)
T ss_dssp EESCC
T ss_pred ecccc
Confidence 65543
No 96
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.16 E-value=0.89 Score=47.10 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=65.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCC-CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccc----cCCCcCCCCc
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS----RGLDFNKAVD 203 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~-gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~a----rGLD~pp~V~ 203 (564)
.+.++||.++|+..+..+++.|..+.+ ++.+..+||+.+..+|...+..+.. ...|+|+|.-.- .-+.+ ..++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~-~~~~ 141 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ-KRFD 141 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT-CCCS
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc-cccc
Confidence 468999999999999999999998654 8899999999999998888888888 699999998432 11455 5688
Q ss_pred EEEEcCC
Q 008461 204 WVVQVDC 210 (564)
Q Consensus 204 ~VI~~d~ 210 (564)
+||.=.+
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8886443
No 97
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.99 E-value=1.5 Score=52.28 Aligned_cols=80 Identities=13% Similarity=0.227 Sum_probs=67.1
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec-ccccCCCcCCCCcE
Q 008461 129 HLNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-VASRGLDFNKAVDW 204 (564)
Q Consensus 129 ~~~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd-v~arGLD~pp~V~~ 204 (564)
..+.+++|.|+|...+...++.|....+ ++.+..++|..+...+..++..+.. ...|+|+|. .+...+.+ ..+.+
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~-~~l~l 728 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF-KDLGL 728 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCC-SSEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccc-cccce
Confidence 3467999999999999999999987655 4678899999999999999999988 899999995 55566888 78888
Q ss_pred EEEcC
Q 008461 205 VVQVD 209 (564)
Q Consensus 205 VI~~d 209 (564)
||.=.
T Consensus 729 vIiDE 733 (1151)
T 2eyq_A 729 LIVDE 733 (1151)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 88643
No 98
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=87.36 E-value=2 Score=39.51 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=55.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----ccc-cCCCcCCCCcE
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VAS-RGLDFNKAVDW 204 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~a-rGLD~pp~V~~ 204 (564)
+.++||.++|+..+..+++.+....+++.+..++|+......... +.....|+|+|. .+. ..+++ ..+++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~~~-~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEA---LLRGADAVVATPGRALDYLRQGVLDL-SRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHH---HHHCCSEEEECHHHHHHHHHHTSSCC-TTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHH---hhCCCCEEEECHHHHHHHHHcCCcch-hhceE
Confidence 568999999999999999999998778889999998875443322 223678999996 222 34666 67887
Q ss_pred EEE
Q 008461 205 VVQ 207 (564)
Q Consensus 205 VI~ 207 (564)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 99
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=86.38 E-value=2.7 Score=40.51 Aligned_cols=73 Identities=16% Similarity=0.308 Sum_probs=53.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecc-----c--ccCCCcCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----A--SRGLDFNKA 201 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv-----~--arGLD~pp~ 201 (564)
+.++||.++|+..+..+++.+..+.. ++.+..++|+.....+.. .+.....|+|+|.- + ..++++ ..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~I~v~Tp~~l~~~l~~~~~~~l-~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL---ALAKKPHIIIATPGRLIDHLENTKGFNL-RA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHH---HHHTCCSEEEECHHHHHHHHHHSTTCCC-TT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHH---HhcCCCCEEEECHHHHHHHHHcCCCcCc-cc
Confidence 46799999999999999988877532 678899999988654432 22337789999962 2 245677 77
Q ss_pred CcEEEE
Q 008461 202 VDWVVQ 207 (564)
Q Consensus 202 V~~VI~ 207 (564)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 887775
No 100
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=86.06 E-value=1.7 Score=51.62 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=64.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhC-CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc-----ccCCCcCCCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA-----SRGLDFNKAV 202 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~-~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~-----arGLD~pp~V 202 (564)
.+.++||.++|+..+..+++.|..+. .++.+..+||+++..+|...+..+.. ...|+|+|.-. .+ +++ ..+
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~-~~l 197 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQ-KRF 197 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHT-SCC
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcc-cCc
Confidence 46789999999999999999999853 46789999999999888888999988 79999999732 22 556 678
Q ss_pred cEEEEcCC
Q 008461 203 DWVVQVDC 210 (564)
Q Consensus 203 ~~VI~~d~ 210 (564)
++||.=.+
T Consensus 198 ~~lViDEa 205 (1104)
T 4ddu_A 198 DFVFVDDV 205 (1104)
T ss_dssp SEEEESCH
T ss_pred CEEEEeCC
Confidence 88886443
No 101
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.79 E-value=2 Score=40.70 Aligned_cols=72 Identities=8% Similarity=0.112 Sum_probs=53.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC---CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc------ccCCCcCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR---PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA------SRGLDFNKA 201 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~---~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~------arGLD~pp~ 201 (564)
+.++||.++|+..+..+++.+..+. +++.+..++|+.....+...+ ....|+|+|.-. ...+++ ..
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~~~~~~~~~-~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL----KKCHIAVGSPGRIKQLIELDYLNP-GS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT----TSCSEEEECHHHHHHHHHTTSSCG-GG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc----cCCCEEEECHHHHHHHHhcCCccc-cc
Confidence 5689999999999999999988764 378899999998876544322 267899999732 234566 66
Q ss_pred CcEEEE
Q 008461 202 VDWVVQ 207 (564)
Q Consensus 202 V~~VI~ 207 (564)
+++||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 777764
No 102
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=84.31 E-value=4.1 Score=37.87 Aligned_cols=72 Identities=10% Similarity=0.265 Sum_probs=54.2
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhC---CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc------ccCCCcCCC
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLR---PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA------SRGLDFNKA 201 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~---~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~------arGLD~pp~ 201 (564)
.++||.++|+..+..+++.+..+. +++.+..++|+.+...+.. .+.. ...|+|+|.-. ...+++ ..
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~-~~ 158 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNL-KH 158 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCC-TT
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCc-cc
Confidence 489999999999999998887764 4788999999988765443 3444 67899999621 234667 77
Q ss_pred CcEEEE
Q 008461 202 VDWVVQ 207 (564)
Q Consensus 202 V~~VI~ 207 (564)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 103
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.96 E-value=3.6 Score=37.72 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=52.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC---CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecc-----ccc-CCCcCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR---PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASR-GLDFNKA 201 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~---~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv-----~ar-GLD~pp~ 201 (564)
..++||.++|+..+..+++.+..+. +++.+..++|+........ .+.....|+|+|.- +.+ .+++ ..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~-~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RLDDTVHVVIATPGRILDLIKKGVAKV-DH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HTTSCCSEEEECHHHHHHHHHTTCSCC-TT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hcCCCCCEEEeCHHHHHHHHHcCCcCc-cc
Confidence 4579999999999999999887764 3678899999987654322 22236789999972 233 3456 67
Q ss_pred CcEEEE
Q 008461 202 VDWVVQ 207 (564)
Q Consensus 202 V~~VI~ 207 (564)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777775
No 104
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=81.43 E-value=2.7 Score=40.02 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=46.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec-----ccccC-CCcCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-----VASRG-LDFNKA 201 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd-----v~arG-LD~pp~ 201 (564)
+.++||.++|+..+..+++.+..+.. ++.+..++|+..... ....+.. ...|+|+|. .+.++ +++ ..
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~-~~ 173 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSP-KW 173 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCS-TT
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCc-cc
Confidence 56899999999999999999988643 567778888765432 2233444 578999994 33343 566 66
Q ss_pred CcEEEE
Q 008461 202 VDWVVQ 207 (564)
Q Consensus 202 V~~VI~ 207 (564)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887775
No 105
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=80.71 E-value=7.2 Score=36.67 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=50.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecc-----ccc--CCCcCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASR--GLDFNK 200 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv-----~ar--GLD~pp 200 (564)
.+.++||.++|+..+..+++.+..+.. ++.+..++|+.+.......+ ....|+|+|.- +.+ .+++ .
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~iiv~Tp~~l~~~l~~~~~~~~-~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI----NNINILVCTPGRLLQHMDETVSFHA-T 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH----TTCSEEEECHHHHHHHHHHCSSCCC-T
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC----CCCCEEEECHHHHHHHHHhcCCccc-c
Confidence 367899999999999999999988743 47788999987654433221 26789999962 122 3555 5
Q ss_pred CCcEEEE
Q 008461 201 AVDWVVQ 207 (564)
Q Consensus 201 ~V~~VI~ 207 (564)
.+++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 6776664
No 106
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=80.29 E-value=4 Score=38.30 Aligned_cols=74 Identities=14% Similarity=0.326 Sum_probs=50.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhh-CCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecc------cccCCCcCCCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKL-RPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV------ASRGLDFNKAV 202 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l-~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv------~arGLD~pp~V 202 (564)
.+.++||.++|+..+..+++.+..+ ..++.+..++|+.....+. ..+.....|+|+|.- ....+++ ..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~Tp~~l~~~~~~~~~~~-~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI---EDISKGVDIIIATPGRLNDLQMNNSVNL-RSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH---HHHHSCCSEEEECHHHHHHHHHTTCCCC-TTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcCc-ccc
Confidence 3678999999999999999999886 3578888999987654332 233347789999962 2335667 678
Q ss_pred cEEEE
Q 008461 203 DWVVQ 207 (564)
Q Consensus 203 ~~VI~ 207 (564)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87775
No 107
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=79.66 E-value=3.9 Score=43.52 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=51.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc-----ccC-C-CcCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA-----SRG-L-DFNKA 201 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~-----arG-L-D~pp~ 201 (564)
+.++||.++|+..+...+..|..+.+ ++.+..+||+.+...+. ..+.....|+|||.-. ..| + .+ ..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~-~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSL-SI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CH---HHHHHHCSEEEECHHHHHHHHHSSSCCCS-TT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhH---HHhhCCCCEEEECHHHHHHHHHhCccccc-cc
Confidence 67899999999999999988887654 78999999998655432 2222367899999732 223 4 56 67
Q ss_pred CcEEEEcC
Q 008461 202 VDWVVQVD 209 (564)
Q Consensus 202 V~~VI~~d 209 (564)
+++||.=.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 88888633
No 108
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=79.65 E-value=6 Score=37.55 Aligned_cols=73 Identities=11% Similarity=0.164 Sum_probs=53.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----cccc-CCCcCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASR-GLDFNKAV 202 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~ar-GLD~pp~V 202 (564)
+.++||.++|+..+..+++.+..+. .++.+..++|+.+....... +.....|+|+|. .+.+ .+++ ..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~I~v~Tp~~l~~~l~~~~~~~-~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD---LERGVEICIATPGRLIDFLECGKTNL-RRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH---HHHCCSEEEECHHHHHHHHHHTSCCC-TTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---hcCCCCEEEECHHHHHHHHHcCCCCc-ccc
Confidence 5679999999999999888777642 37888999999887655433 333678999996 3332 3567 778
Q ss_pred cEEEE
Q 008461 203 DWVVQ 207 (564)
Q Consensus 203 ~~VI~ 207 (564)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88875
No 109
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.89 E-value=2.9 Score=39.03 Aligned_cols=72 Identities=8% Similarity=0.042 Sum_probs=46.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc------ccCCCcCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA------SRGLDFNKAV 202 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~------arGLD~pp~V 202 (564)
..++||.++|+..+..+++.+..+. .++.+..++|+.+....... +. ...|+|+|.-. ...+++ ..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~iiv~Tp~~l~~~~~~~~~~~-~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR-DAQIVVGTPGRVFDNIQRRRFRT-DKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT-TCSEEEECHHHHHHHHHTTSSCC-TTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC-CCCEEEECHHHHHHHHHhCCcch-hhC
Confidence 5689999999999999999888764 36778889998765443221 11 47899999632 334566 667
Q ss_pred cEEEE
Q 008461 203 DWVVQ 207 (564)
Q Consensus 203 ~~VI~ 207 (564)
++||.
T Consensus 157 ~~iVi 161 (224)
T 1qde_A 157 KMFIL 161 (224)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77774
No 110
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=76.77 E-value=15 Score=35.38 Aligned_cols=73 Identities=12% Similarity=0.206 Sum_probs=53.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----cc--ccCCCcCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VA--SRGLDFNKA 201 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~--arGLD~pp~ 201 (564)
+.++||.++|+..+..+++.+..+.. ++.+..++|+....... ..+.....|+|+|. .+ ..++++ ..
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~-~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEA---QKLGNGINIIVATPGRLLDHMQNTPGFMY-KN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHH---HHHHHCCSEEEECHHHHHHHHHHCTTCCC-TT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHH---HHhcCCCCEEEEcHHHHHHHHHccCCccc-cc
Confidence 67899999999999999999988643 56678888988765433 22333688999994 22 224677 77
Q ss_pred CcEEEE
Q 008461 202 VDWVVQ 207 (564)
Q Consensus 202 V~~VI~ 207 (564)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888875
No 111
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=76.06 E-value=9.6 Score=39.04 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=55.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc------ccCCCcCCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA------SRGLDFNKA 201 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~------arGLD~pp~ 201 (564)
.+.++||.|++...+...++.|.... ++..+..+||+.....+.... ....|+|+|.-. ...+.+ ..
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~ivv~T~~~l~~~~~~~~~~~-~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW----ARAKVIVATPQTIENDLLAGRISL-ED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH----HHCSEEEECHHHHHHHHHTTSCCT-TS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc----cCCCEEEecHHHHHHHHhcCCcch-hh
Confidence 57899999999999999999998874 445899999999887654332 257899999632 223566 67
Q ss_pred CcEEEEcC
Q 008461 202 VDWVVQVD 209 (564)
Q Consensus 202 V~~VI~~d 209 (564)
+++||.=.
T Consensus 126 ~~~vIiDE 133 (494)
T 1wp9_A 126 VSLIVFDE 133 (494)
T ss_dssp CSEEEEET
T ss_pred ceEEEEEC
Confidence 88888633
No 112
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=75.15 E-value=7.7 Score=39.09 Aligned_cols=73 Identities=10% Similarity=0.264 Sum_probs=55.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC---CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc------ccCCCcCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR---PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA------SRGLDFNK 200 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~---~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~------arGLD~pp 200 (564)
..++||.|+|+..+..+++.+..+. +++.+..++|+.+...... .+.. ...|+|+|.-. ...+++ .
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~-~ 151 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNL-K 151 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCC-T
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccc-c
Confidence 4589999999999999988887763 5788999999988765443 3444 57899999632 234667 7
Q ss_pred CCcEEEE
Q 008461 201 AVDWVVQ 207 (564)
Q Consensus 201 ~V~~VI~ 207 (564)
.+++||.
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 7888885
No 113
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=74.00 E-value=2.5 Score=42.15 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=50.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC---CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc------c-cCCCcC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR---PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA------S-RGLDFN 199 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~---~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~------a-rGLD~p 199 (564)
..++||.++|+..+..++..+..+. +++.+..++|+.....+. . ...|||||.-. . ..+++
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l- 233 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDP- 233 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCG-
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCCh-
Confidence 3479999999999999988888763 467778888776532211 3 56799999732 1 35777
Q ss_pred CCCcEEEEc
Q 008461 200 KAVDWVVQV 208 (564)
Q Consensus 200 p~V~~VI~~ 208 (564)
..+.+||.=
T Consensus 234 ~~l~~lVlD 242 (300)
T 3fmo_B 234 KKIKVFVLD 242 (300)
T ss_dssp GGCSEEEET
T ss_pred hhceEEEEe
Confidence 788888853
No 114
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=73.95 E-value=15 Score=37.41 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=52.9
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecc-----ccc-CCCcCCCCc
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASR-GLDFNKAVD 203 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv-----~ar-GLD~pp~V~ 203 (564)
.++||.++|+..+..+++.+..+. .++.+..++|+........ .+.....|+|+|.- +.+ .+++ ..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~I~v~Tp~~l~~~l~~~~~~~-~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLERGCHLLVATPGRLVDMMERGKIGL-DFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTTCCSEEEECHHHHHHHHHTTSBCC-TTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhCCCCEEEEChHHHHHHHHcCCcCh-hhCc
Confidence 579999999999999999887653 4678899999988654432 23336789999972 222 3566 6788
Q ss_pred EEEE
Q 008461 204 WVVQ 207 (564)
Q Consensus 204 ~VI~ 207 (564)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 115
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=73.79 E-value=8.1 Score=36.80 Aligned_cols=73 Identities=11% Similarity=0.187 Sum_probs=51.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc------ccCCCcCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA------SRGLDFNKAV 202 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~------arGLD~pp~V 202 (564)
+.++||.++|+..+..+++.+..+. .++.+..++|+.+...... .+.....|+|+|.-. ...+++ ..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Ivv~Tp~~l~~~l~~~~~~~-~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EVQMGCHLLVATPGRLVDFIEKNKISL-EFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HHSSCCSEEEECHHHHHHHHHTTSBCC-TTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhCCCCCEEEECHHHHHHHHHcCCCCh-hhC
Confidence 4689999999999999998887753 3567788899887554332 222367899999722 223566 677
Q ss_pred cEEEE
Q 008461 203 DWVVQ 207 (564)
Q Consensus 203 ~~VI~ 207 (564)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87775
No 116
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=73.16 E-value=10 Score=41.64 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=52.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHh--c-cCCeEEEec
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC--E-KRSVLFCTD 190 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~--~-~~~VLVaTd 190 (564)
.+.+||.++++.-+...+..|..+ |+.+..++|+++..++..++..+. . ...|||+|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL--GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH--TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 578999999999999999999987 899999999999999999998884 4 788999998
No 117
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=72.13 E-value=2.5 Score=39.49 Aligned_cols=73 Identities=12% Similarity=0.234 Sum_probs=49.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC------CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----cccc-CCCc
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP------GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASR-GLDF 198 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~------gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~ar-GLD~ 198 (564)
+.++||.++|+..+..+++.+..+.. ++.+..++|+.+..... ..+.....|+|+|. .+.+ .+++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 148 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKLNVQPHIVIGTPGRINDFIREQALDV 148 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCCSSCCSEEEECHHHHHHHHHTTCCCG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHcCCCCCEEEeCHHHHHHHHHcCCCCc
Confidence 46899999999999999988877532 56788889987543221 11111457999995 2233 3566
Q ss_pred CCCCcEEEE
Q 008461 199 NKAVDWVVQ 207 (564)
Q Consensus 199 pp~V~~VI~ 207 (564)
..+++||.
T Consensus 149 -~~~~~lVi 156 (219)
T 1q0u_A 149 -HTAHILVV 156 (219)
T ss_dssp -GGCCEEEE
T ss_pred -CcceEEEE
Confidence 66777764
No 118
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=71.68 E-value=17 Score=37.82 Aligned_cols=73 Identities=14% Similarity=0.253 Sum_probs=54.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----ccccC-CCcCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAV 202 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~arG-LD~pp~V 202 (564)
..++||.++|+..+..+++.+..+. .++.+..++|+.+...... .+.....|+|+|. .+.+| +++ ..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~Ivv~Tp~~l~~~l~~~~~~l-~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---CITRGCHVVIATPGRLLDFVDRTFITF-EDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---HHTTCCSEEEECHHHHHHHHHTTSCCC-TTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---HhhcCCCEEEEChHHHHHHHHhCCccc-ccC
Confidence 4589999999999999999988764 3567888999988754432 2233788999996 23333 567 778
Q ss_pred cEEEE
Q 008461 203 DWVVQ 207 (564)
Q Consensus 203 ~~VI~ 207 (564)
++||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 88885
No 119
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=71.47 E-value=3.8 Score=43.49 Aligned_cols=75 Identities=11% Similarity=0.238 Sum_probs=54.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc-----ccC-C-CcCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA-----SRG-L-DFNKA 201 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~-----arG-L-D~pp~ 201 (564)
+.++||.++|+..+...+..|..+.+ ++.+..+||+.+...+. ..+.....|+|||.-. ..| + .+ ..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~-~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSV---QHIIEDNDIIILTPQILVNNLNNGAIPSL-SV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCH---HHHHHHCSEEEECHHHHHHHHHTSSSCCG-GG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhH---HHHhcCCCEEEECHHHHHHHHhcCccccc-cc
Confidence 67899999999999988888877643 78899999998654432 2222367899999732 222 3 56 66
Q ss_pred CcEEEEcC
Q 008461 202 VDWVVQVD 209 (564)
Q Consensus 202 V~~VI~~d 209 (564)
+++||.=.
T Consensus 128 ~~~vViDE 135 (555)
T 3tbk_A 128 FTLMIFDE 135 (555)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 88888633
No 120
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=71.13 E-value=8.4 Score=41.58 Aligned_cols=58 Identities=12% Similarity=0.248 Sum_probs=52.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 190 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd 190 (564)
.+.+||.++++.-+...+..|... |+.+..+||+.+...+..++..+.. ...||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN--GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 578999999999999999999885 8999999999999999999999988 899999996
No 121
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=69.98 E-value=13 Score=37.38 Aligned_cols=73 Identities=8% Similarity=0.026 Sum_probs=53.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc------ccCCCcCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA------SRGLDFNKAV 202 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~------arGLD~pp~V 202 (564)
+.++||.++|+..+..+++.+..+. .++.+..++|+.........+. ...|+|+|.-. ...+.+ ..+
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~-~~~ 163 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR----DAQIVVGTPGRVFDNIQRRRFRT-DKI 163 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH----HCSEEEECHHHHHHHHHTTSSCC-TTC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC----CCCEEEECHHHHHHHHHhCCcch-hhC
Confidence 5699999999999999999888764 3578899999988765544332 57899999522 224555 667
Q ss_pred cEEEEc
Q 008461 203 DWVVQV 208 (564)
Q Consensus 203 ~~VI~~ 208 (564)
++||.=
T Consensus 164 ~~vIiD 169 (394)
T 1fuu_A 164 KMFILD 169 (394)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 888753
No 122
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=69.36 E-value=12 Score=37.92 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=53.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----cccc-CCCcCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASR-GLDFNKAV 202 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~ar-GLD~pp~V 202 (564)
+.++||.++|+..+..+++.+..+.+ ++.+..++|+........ .+.....|+|+|. .+.+ ..++ ..+
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Ivv~T~~~l~~~~~~~~~~~-~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---RLNETVHILVGTPGRVLDLASRKVADL-SDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---HTTSCCSEEEECHHHHHHHHHTTCSCC-TTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---HhcCCCCEEEEchHHHHHHHHhCCccc-ccC
Confidence 45899999999999999999887654 677888999887654321 1222678999995 2333 3566 778
Q ss_pred cEEEEcC
Q 008461 203 DWVVQVD 209 (564)
Q Consensus 203 ~~VI~~d 209 (564)
++||.=.
T Consensus 165 ~~vIiDE 171 (400)
T 1s2m_A 165 SLFIMDE 171 (400)
T ss_dssp CEEEEES
T ss_pred CEEEEeC
Confidence 8888633
No 123
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=69.36 E-value=6.6 Score=44.65 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=51.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecc-----cccC-C-CcCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASRG-L-DFNKA 201 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv-----~arG-L-D~pp~ 201 (564)
+.++||.|+|+..+...+..|....+ ++.+..+||+.+...+.. .+.....|+|||.- +.+| + .+ ..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~-~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVE---KVIEDSDIIVVTPQILVNSFEDGTLTSL-SI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHH---HHHHTCSEEEECHHHHHHHHHSSSCCCG-GG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHH---HhhCCCCEEEEchHHHHHHHHhcccccc-cc
Confidence 67999999999999999988888755 889999999986554322 22236789999962 2222 4 56 67
Q ss_pred CcEEEEc
Q 008461 202 VDWVVQV 208 (564)
Q Consensus 202 V~~VI~~ 208 (564)
+++||.=
T Consensus 372 ~~~iViD 378 (797)
T 4a2q_A 372 FTLMIFD 378 (797)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 8888863
No 124
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=68.42 E-value=15 Score=36.27 Aligned_cols=73 Identities=11% Similarity=0.201 Sum_probs=52.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc------ccCCCcCCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA------SRGLDFNKA 201 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~------arGLD~pp~ 201 (564)
.+.++||.++++..+..+++.+..+. .++.+..++|+.........+. ...|+|+|.-. ...+++ ..
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~iiv~T~~~l~~~~~~~~~~~-~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK----NANIVVGTPGRILDHINRGTLNL-KN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH----TCSEEEECHHHHHHHHHTTCSCT-TS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC----CCCEEEecHHHHHHHHHcCCccc-cc
Confidence 36789999999999999999988763 3567888999887654432221 67899999632 223566 67
Q ss_pred CcEEEE
Q 008461 202 VDWVVQ 207 (564)
Q Consensus 202 V~~VI~ 207 (564)
+++||.
T Consensus 148 ~~~iIi 153 (367)
T 1hv8_A 148 VKYFIL 153 (367)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 125
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=65.20 E-value=38 Score=37.64 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=62.8
Q ss_pred EEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc--------------------CCCC
Q 008461 109 TAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY--------------------GRMK 168 (564)
Q Consensus 109 ~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH--------------------g~m~ 168 (564)
...-+....|-..+..++... +.++||.+++...+..++..|...+|+-.|..+- ...+
T Consensus 32 ~l~g~tgs~kt~~~a~~~~~~-~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~ 110 (664)
T 1c4o_A 32 TLLGATGTGKTVTMAKVIEAL-GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDAS 110 (664)
T ss_dssp EEEECTTSCHHHHHHHHHHHH-TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCS
T ss_pred EEEcCCCcHHHHHHHHHHHHh-CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcc
Confidence 344556667777777777654 5789999999999999999999987765554433 3332
Q ss_pred -----HHHHHHHHHHHhc-cCCeEEEecccccCC
Q 008461 169 -----QDRRMAIYAQFCE-KRSVLFCTDVASRGL 196 (564)
Q Consensus 169 -----~~~R~~i~~~F~~-~~~VLVaTdv~arGL 196 (564)
...|..++..+.. ...|+|+|-.+..|+
T Consensus 111 ~~~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 111 INPEIERLRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp CCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred cCHHHHHHHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 5678899999977 555777776555553
No 126
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=63.83 E-value=5.2 Score=44.19 Aligned_cols=37 Identities=24% Similarity=0.623 Sum_probs=30.6
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEecc
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 73 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSAT 73 (564)
.+++||||||+ |++ ...+..|+..+|...|++++.-.
T Consensus 262 ~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 262 HLDVLVVDEAS-MID---LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp SCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEEEEEECT
T ss_pred CCCEEEEechh-hCC---HHHHHHHHHhCCCCCEEEEEcch
Confidence 57899999999 454 45778899999999999998654
No 127
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=62.43 E-value=8.3 Score=45.52 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=57.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CC----CeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc-ccCCC-cCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GI----PLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA-SRGLD-FNKAV 202 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi----~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~-arGLD-~pp~V 202 (564)
+.++||.++|+..+..+++.|..+.. ++ .+..+||+.+...+......+.+ ..|+|+|+-. ..-+. + ..+
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~L-~~l 176 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYREL-GHF 176 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTTS-CCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHHh-ccC
Confidence 57899999999999999999887643 45 78999999998887777777666 8999999721 11111 5 567
Q ss_pred cEEEE
Q 008461 203 DWVVQ 207 (564)
Q Consensus 203 ~~VI~ 207 (564)
++||.
T Consensus 177 ~~lVi 181 (1054)
T 1gku_B 177 DFIFV 181 (1054)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 78875
No 128
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=62.33 E-value=10 Score=34.60 Aligned_cols=73 Identities=11% Similarity=0.215 Sum_probs=44.5
Q ss_pred CCcEEEEeCChHHHHH-HHHHHHhhC-CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc-----cc-------CC
Q 008461 131 NSKILVFLTSCKQVKY-VFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA-----SR-------GL 196 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~-l~e~L~~l~-~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~-----ar-------GL 196 (564)
..++||+|++...+.. +.+.+..+. .++.+..++|+.....+.. .......|+|+|.-. .+ ++
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 158 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFP---EVVKSCDIIISTAQILENSLLNLENGEDAGV 158 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHH---HHHHHCSEEEEEHHHHHHHHHC-------CC
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHH---hhccCCCEEEECHHHHHHHHhccCccccccc
Confidence 5799999999988877 555665542 2678888998765332211 111257899999632 11 25
Q ss_pred CcCCCCcEEEE
Q 008461 197 DFNKAVDWVVQ 207 (564)
Q Consensus 197 D~pp~V~~VI~ 207 (564)
.+ ..+++||.
T Consensus 159 ~~-~~~~~iIi 168 (216)
T 3b6e_A 159 QL-SDFSLIII 168 (216)
T ss_dssp CG-GGCSEEEE
T ss_pred ch-hcccEEEE
Confidence 55 56666664
No 129
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=62.32 E-value=16 Score=40.27 Aligned_cols=74 Identities=14% Similarity=0.241 Sum_probs=53.8
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecc-----cccC-C-CcCCCC
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASRG-L-DFNKAV 202 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv-----~arG-L-D~pp~V 202 (564)
.++||.++|+..+...++.|..+.+ ++.+..++|+.+...+.. .+.....|+|+|.- +..| + ++ ..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l-~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVE---QIVENNDIIILTPQILVNNLKKGTIPSL-SIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHH---HHHHTCSEEEECHHHHHHHHHTTSSCCG-GGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHH---HhccCCCEEEECHHHHHHHHhcCccccc-ccc
Confidence 7899999999999999999888765 788999999886433221 12236889999972 2333 3 56 678
Q ss_pred cEEEEcC
Q 008461 203 DWVVQVD 209 (564)
Q Consensus 203 ~~VI~~d 209 (564)
++||.=.
T Consensus 138 ~~vViDE 144 (696)
T 2ykg_A 138 TLMIFDE 144 (696)
T ss_dssp SEEEEET
T ss_pred cEEEEeC
Confidence 8888633
No 130
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=59.45 E-value=5.2 Score=37.96 Aligned_cols=73 Identities=15% Similarity=0.324 Sum_probs=48.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecc-----ccc---CCCcC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV-----ASR---GLDFN 199 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv-----~ar---GLD~p 199 (564)
+.++||.++|+..+..+++.+..+.. ++.+..++|+.....+ ...... ...|+|+|.- +.+ ++++
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~- 173 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL- 173 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC-
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc-
Confidence 45799999999999999999988643 5667777765322111 111122 5679999952 222 4677
Q ss_pred CCCcEEEE
Q 008461 200 KAVDWVVQ 207 (564)
Q Consensus 200 p~V~~VI~ 207 (564)
..+.+||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 77887775
No 131
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=59.24 E-value=24 Score=34.30 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=52.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc-----c-cCCCcCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA-----S-RGLDFNKAV 202 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~-----a-rGLD~pp~V 202 (564)
+.++||.++++..+..+++.+..+. .++.+..+||+......... +. ...|+|+|.-. . ..+++ ..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~i~v~T~~~l~~~~~~~~~~~-~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR-NADIVVATPGRLLDLWSKGVIDL-SSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT-TCSEEEECHHHHHHHHHTTSCCG-GGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC-CCCEEEECHHHHHHHHHcCCcch-hhC
Confidence 6789999999999999999998753 35788899999887644322 21 47899999632 2 23566 667
Q ss_pred cEEEE
Q 008461 203 DWVVQ 207 (564)
Q Consensus 203 ~~VI~ 207 (564)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87775
No 132
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=57.73 E-value=34 Score=34.63 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=54.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----cccc-CCCcCCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASR-GLDFNKA 201 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~ar-GLD~pp~ 201 (564)
...++||.++|+..+..+++.+..+. .++.+..++|+......... ......|+|+|. .+.+ .+++ ..
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~ivv~Tp~~l~~~l~~~~~~~-~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---LDYGQHVVAGTPGRVFDMIRRRSLRT-RA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---HHHCCSEEEECHHHHHHHHHTTSSCC-TT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---hhcCCCEEEcCHHHHHHHHHhCCccH-hh
Confidence 35799999999999999999888763 35677888998876654332 223678999995 3334 4666 67
Q ss_pred CcEEEE
Q 008461 202 VDWVVQ 207 (564)
Q Consensus 202 V~~VI~ 207 (564)
+++||.
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 888875
No 133
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=57.67 E-value=55 Score=34.97 Aligned_cols=116 Identities=9% Similarity=0.091 Sum_probs=79.1
Q ss_pred eeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeec-------cCCCC-----HHHHHH
Q 008461 107 QQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL-------YGRMK-----QDRRMA 174 (564)
Q Consensus 107 ~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~l-------Hg~m~-----~~~R~~ 174 (564)
.+...-+....|--.+..++... +.++||.+++...+..++..|....|.- |..+ |...+ ...|..
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~~-~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~~~Rl~ 93 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAERH-AGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDIISSRLS 93 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHS-SSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHHHHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHHHHHHH
Confidence 34455566667777777777654 6799999999999999999998865432 3322 11221 246888
Q ss_pred HHHHHhc-cCCeEEEecccccCCCcCCC----CcEEEEcCCCCCHhhHHHHhccc
Q 008461 175 IYAQFCE-KRSVLFCTDVASRGLDFNKA----VDWVVQVDCPEDVASYIHRVGRT 224 (564)
Q Consensus 175 i~~~F~~-~~~VLVaTdv~arGLD~pp~----V~~VI~~d~P~s~~~YiqRiGRt 224 (564)
++..+.. ...|+|+|-.+..+.=.|+. -.+.+..+-..+.+.+.++.-..
T Consensus 94 ~l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L~~~ 148 (483)
T 3hjh_A 94 TLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSA 148 (483)
T ss_dssp HHHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHHHHT
T ss_pred HHHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHHHHc
Confidence 8888888 77788887666555444332 35677777777888887775333
No 134
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=56.78 E-value=4.9 Score=44.53 Aligned_cols=72 Identities=11% Similarity=0.252 Sum_probs=49.6
Q ss_pred CcEEEEeCChHHHHHH-HHHHHhhCCC-CCeeeccCCCCHHHHHHHHHHHhccCCeEEEeccc------------ccCCC
Q 008461 132 SKILVFLTSCKQVKYV-FEAFKKLRPG-IPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA------------SRGLD 197 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l-~e~L~~l~~g-i~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv~------------arGLD 197 (564)
.++||.++++.-+... ++.|....+. +.+..+||+.....+.. .+.....|+|+|.-. ...+.
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~ 133 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFP---EVVKSCDIIISTAQILENSLLNLENGEDAGVQ 133 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHH---HHHHSCSEEEEEHHHHHHHTC--------CCC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHH---hhhcCCCEEEECHHHHHHHHhcccccccccee
Confidence 7899999999999888 8888887555 89999999986543322 222478899999632 22356
Q ss_pred cCCCCcEEEE
Q 008461 198 FNKAVDWVVQ 207 (564)
Q Consensus 198 ~pp~V~~VI~ 207 (564)
+ ..+++||.
T Consensus 134 ~-~~~~lvVi 142 (699)
T 4gl2_A 134 L-SDFSLIII 142 (699)
T ss_dssp G-GGCSEEEE
T ss_pred c-ccCcEEEE
Confidence 6 67888886
No 135
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=54.84 E-value=12 Score=30.06 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=30.5
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCC
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 168 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~ 168 (564)
.+++|||.+...+...+..|... |+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~--G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAE--GYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHH--TCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHc--CCcEEEEcccHH
Confidence 78999999998888899999887 777888999875
No 136
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=54.21 E-value=1.2e+02 Score=27.08 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=56.3
Q ss_pred ccHHHHHHHHHHH--cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc
Q 008461 116 EQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 192 (564)
Q Consensus 116 ~~Kl~~L~~~L~~--~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~ 192 (564)
..-...+...+.. .....+.|.|.+..++..+.+.|... |+++..+.++.. . ...|.|+|--.
T Consensus 44 ~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~--gi~~~~l~~~~~------------~~~~~v~v~t~~~ 109 (174)
T 3dmn_A 44 EAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKAR--GEQVTLIQTENQ------------RLAPGVIVVPSFL 109 (174)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTT--TCCEEECSSCC-------------CCCSSEEEEEGGG
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHc--CCcceeeccccc------------ccCCCeEEEEccc
Confidence 3344445554433 23578999999999999999999874 788777765431 2 46799999999
Q ss_pred ccCCCcCCCCcEEEEcCCC
Q 008461 193 SRGLDFNKAVDWVVQVDCP 211 (564)
Q Consensus 193 arGLD~pp~V~~VI~~d~P 211 (564)
+.|+-| +.||.+++.
T Consensus 110 ~KGlEf----~~V~~~~~~ 124 (174)
T 3dmn_A 110 AKGLEF----DAVIVWNAN 124 (174)
T ss_dssp CTTCCE----EEEEEETCB
T ss_pred cCCcCC----CEEEEecCC
Confidence 999998 466776654
No 137
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=53.54 E-value=9.7 Score=31.63 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=32.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCH
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 169 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~ 169 (564)
..++||||.+...+...+..|..+ |+.+..+.||+..
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~--G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQL--GLNIVDVEGGIQS 91 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTT--TCCEEEETTHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHc--CCCEEEEcCcHHH
Confidence 578999999999999999999876 7799999998654
No 138
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=53.44 E-value=58 Score=36.10 Aligned_cols=113 Identities=13% Similarity=0.146 Sum_probs=77.1
Q ss_pred eEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeecc--------------------CCC
Q 008461 108 QTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY--------------------GRM 167 (564)
Q Consensus 108 q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lH--------------------g~m 167 (564)
+...-+....|--.+..++... +.++||.+++...+..++..|....|+-.|..+- ...
T Consensus 35 ~~l~g~~gs~k~~~~a~~~~~~-~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~ 113 (661)
T 2d7d_A 35 QTLLGATGTGKTFTVSNLIKEV-NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDA 113 (661)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH-CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEE
T ss_pred EEEECcCCcHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhc
Confidence 3444566667777777777654 5689999999999999999999987665454432 111
Q ss_pred --C---HHHHHHHHHHHhc-cCCeEEEecccccCCCcCCC----CcEEEEcCCCCCHhhHHHHhc
Q 008461 168 --K---QDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA----VDWVVQVDCPEDVASYIHRVG 222 (564)
Q Consensus 168 --~---~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~----V~~VI~~d~P~s~~~YiqRiG 222 (564)
+ ...|..++..+.. ...|+|+|-.+-.|+= ||. -.+.+..+-..+.+.++++.=
T Consensus 114 ~~~~~i~~~Rl~~l~~L~~~~~~ivV~sv~al~~l~-~~~~~~~~~~~l~~G~~~~~~~l~~~L~ 177 (661)
T 2d7d_A 114 SINDEIDKLRHSATSALFERRDVIIIASVSCIYGLG-SPEEYREMVVSLRTEMEIERNELLRKLV 177 (661)
T ss_dssp EECHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCBC-CHHHHHHHCEEEETTCBCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCeEEEecHHHHcCCC-CHHHHHhccEEEeCCCEeCHHHHHHHHH
Confidence 1 5678999999977 5557777766556642 121 345566666677777777653
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.39 E-value=12 Score=37.31 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=29.8
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEecc
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 73 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSAT 73 (564)
.+.+++||||+|. ++......+..++...+.+..+++.|..
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 4667999999999 6666677788888887766555555544
No 140
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=52.63 E-value=36 Score=34.31 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=53.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEec-----cccc-CCCcCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-----VASR-GLDFNK 200 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTd-----v~ar-GLD~pp 200 (564)
...++||.++|+..+..+++.+..+. .+..+..++|+...... ...+.. ...|+|+|. .+.+ .+.+ .
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~-~ 182 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSP-K 182 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCS-T
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccc-c
Confidence 35789999999999999999888753 35677788887765433 344555 778999995 3333 3556 6
Q ss_pred CCcEEEE
Q 008461 201 AVDWVVQ 207 (564)
Q Consensus 201 ~V~~VI~ 207 (564)
.+++||.
T Consensus 183 ~~~~vVi 189 (414)
T 3eiq_A 183 YIKMFVL 189 (414)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 6787775
No 141
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=50.36 E-value=19 Score=30.40 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=30.9
Q ss_pred CcEEEEe-CChHHHHHHHHHHHhhCCCCCeeeccCCCCHH
Q 008461 132 SKILVFL-TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQD 170 (564)
Q Consensus 132 ~k~IVF~-~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~ 170 (564)
.++|||| .+...+..++..|... |+.+..|.||+..-
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~--G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSL--GVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHT--TCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHc--CCceEEEeCcHHHH
Confidence 7899999 5877788888899876 77999999997653
No 142
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=48.82 E-value=14 Score=30.37 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=31.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCCH
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 169 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~~ 169 (564)
..++||||.+...+...+..|... |+ .+..|.||+..
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~--G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSA--GFEHVSELKGGLAA 89 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHT--TCSCEEECTTHHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHc--CCcCEEEecCCHHH
Confidence 578999999999999999999886 77 48889998653
No 143
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=48.74 E-value=38 Score=38.86 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=44.7
Q ss_pred HcCCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec
Q 008461 128 AHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 190 (564)
Q Consensus 128 ~~~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd 190 (564)
...+.+++|.++|+.-|...++.+..+. -|+.+.++.|+++...|.... ...|+|+|+
T Consensus 112 ~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~-----~~dIvvgTp 171 (853)
T 2fsf_A 112 ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY-----AADITYGTN 171 (853)
T ss_dssp HTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH-----HSSEEEEEH
T ss_pred HHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc-----CCCEEEECC
Confidence 3446789999999999988887766542 388999999999976544322 588999997
No 144
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=47.79 E-value=12 Score=30.35 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=31.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 168 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~ 168 (564)
..++||||.+...+...+..|... |+.+..+.||+.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~--G~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQN--GVNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTT--TCEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHC--CCCEEEecccHH
Confidence 578999999999899999999875 778999999865
No 145
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=47.77 E-value=9.4 Score=44.38 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=50.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCC--CCCeeeccCCCCHHHHHHHHHHHhccCCeEEEecc-----cccC-C-CcCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASRG-L-DFNKA 201 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~--gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTdv-----~arG-L-D~pp~ 201 (564)
+.++||.++|+..+...+..|....+ ++.+..+||+.+...+.. .+.....|+|+|.- +.++ + .+ ..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~---~~~~~~~IvI~Tp~~L~~~l~~~~~~~l-~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVE---KVIEDSDIIVVTPQILVNSFEDGTLTSL-SI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCH---HHHHHCSEEEECHHHHHHHHHSSSCCCG-GG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHH---HhccCCCEEEecHHHHHHHHHcCccccc-cC
Confidence 57899999999999999888887654 789999999986554322 22236789999962 2222 3 56 66
Q ss_pred CcEEEEc
Q 008461 202 VDWVVQV 208 (564)
Q Consensus 202 V~~VI~~ 208 (564)
+++||.=
T Consensus 372 ~~liViD 378 (936)
T 4a2w_A 372 FTLMIFD 378 (936)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8888863
No 146
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=47.67 E-value=48 Score=38.02 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=45.6
Q ss_pred HHcCCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec
Q 008461 127 KAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 190 (564)
Q Consensus 127 ~~~~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd 190 (564)
....+..++|.++|+.-|...++.+..+. -|+.+.++.|+++...|.... ...|+++|+
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~-----~~dIv~gTp 180 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY-----AADITYSTN 180 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH-----HSSEEEEEH
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc-----CCCEEEECc
Confidence 44456789999999999988877765542 489999999999987654332 578999997
No 147
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=46.43 E-value=11 Score=31.27 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=30.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 168 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~ 168 (564)
..+++|||.+...+...+..|... |+.+..+.||+.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~--G~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEAN--GIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTT--TCEEEEETTHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHc--CCCEEEecChHH
Confidence 578999999998888999999885 888888888864
No 148
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=45.69 E-value=12 Score=30.63 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=30.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 168 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~ 168 (564)
..++||||.+...+...+..|... |+.+..+.||+.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~--G~~v~~l~GG~~ 91 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEAN--GIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTT--TCEEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHC--CCCeEEeCCCHH
Confidence 578999999988888899999875 778999999864
No 149
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=45.42 E-value=49 Score=38.20 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=45.8
Q ss_pred HHHcCCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec
Q 008461 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 190 (564)
Q Consensus 126 L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd 190 (564)
+....+..++|.++|+.-|...++.+..+. -|+.+.++.|+++...|...+ ...|+++|+
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y-----~~DIvygTp 208 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY-----NADITYGTN 208 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH-----HSSEEEEEH
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc-----CCCEEEECc
Confidence 344456789999999998877777665542 389999999999987665433 578999997
No 150
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=44.27 E-value=44 Score=25.93 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=28.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCCC-eeeccCCCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMK 168 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~-v~~lHg~m~ 168 (564)
...+++|||.+...+...+..|..+ |+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~--G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEM--GYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHT--TCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHc--CCCCEEec-cCHH
Confidence 4678999999998888999999886 664 6666 7754
No 151
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=43.48 E-value=31 Score=36.37 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=52.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhh--CCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccc-cC--CCcCCCCcE
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKL--RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS-RG--LDFNKAVDW 204 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l--~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~a-rG--LD~pp~V~~ 204 (564)
..++||.++|..-+...++.|... .++..+..+||+.+...+ .. ...|+|+|.-.- +. ..+ ..+.+
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~-~~~~l 228 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWF-SQFGM 228 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGG-GGEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhh-hcCCE
Confidence 459999999999999999999876 455678899998876554 24 788999997432 11 345 56777
Q ss_pred EEEcCC
Q 008461 205 VVQVDC 210 (564)
Q Consensus 205 VI~~d~ 210 (564)
||.=.+
T Consensus 229 iIiDE~ 234 (510)
T 2oca_A 229 MMNDEC 234 (510)
T ss_dssp EEEETG
T ss_pred EEEECC
Confidence 776443
No 152
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=43.46 E-value=61 Score=37.60 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=46.8
Q ss_pred HHHcCCCcEEEEeCChHHHHHHHHHHHhh--CCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec
Q 008461 126 IKAHLNSKILVFLTSCKQVKYVFEAFKKL--RPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 190 (564)
Q Consensus 126 L~~~~~~k~IVF~~t~k~v~~l~e~L~~l--~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd 190 (564)
+....+.+++|.++|..-|...++.+..+ .-|+.+.++.|+++...|...+ ...|+++|.
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay-----~~DIvyGTp 176 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY-----LADVTYVTN 176 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH-----TSSEEEEEH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc-----CCCEEEECc
Confidence 34445678999999999888888777664 2488999999999977665543 578999996
No 153
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=42.15 E-value=9.6 Score=33.75 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=25.4
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHhCCC-CCcEEEEeccC
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQLPK-HRQTFLFSATQ 74 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~-~~Q~llfSATl 74 (564)
+.++|||||++.+.... ...+..++..+.. ...+++++...
T Consensus 83 ~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 56899999999866544 5556666655433 24424455553
No 154
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=40.01 E-value=41 Score=39.87 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=51.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEe-----cccccCCC-cCCCCc
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT-----DVASRGLD-FNKAVD 203 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaT-----dv~arGLD-~pp~V~ 203 (564)
+.++||.++|+..+...+..|...+. .+..++|+++ .+ ...|+|+| +.+.+|-. + ..+.
T Consensus 227 g~rvlvl~PtraLa~Q~~~~l~~~~~--~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l-~~l~ 292 (1108)
T 3l9o_A 227 KQRVIYTSPIKALSNQKYRELLAEFG--DVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVM-REVA 292 (1108)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTS--SEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHH-HHEE
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhC--CccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCcccc-ccCC
Confidence 67899999999999999999998754 6888999876 23 68899999 45555543 6 6788
Q ss_pred EEEEcC
Q 008461 204 WVVQVD 209 (564)
Q Consensus 204 ~VI~~d 209 (564)
+||.=.
T Consensus 293 lVVIDE 298 (1108)
T 3l9o_A 293 WVIFDE 298 (1108)
T ss_dssp EEEEET
T ss_pred EEEEhh
Confidence 888633
No 155
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=39.46 E-value=19 Score=29.57 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=31.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCCH
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 169 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~~ 169 (564)
..++||||.+...+...+..|... |+ .+..+.||+..
T Consensus 58 ~~~ivvyc~~g~rs~~a~~~L~~~--G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 58 DTPVMVMCYHGNSSKGAAQYLLQQ--GYDVVYSIDGGFEA 95 (108)
T ss_dssp TSCEEEECSSSSHHHHHHHHHHHH--TCSSEEEETTHHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHc--CCceEEEecCCHHH
Confidence 578999999988888899999886 77 48889998754
No 156
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=38.46 E-value=22 Score=30.49 Aligned_cols=38 Identities=8% Similarity=0.203 Sum_probs=31.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCCC-eeeccCCCCH
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 169 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~-v~~lHg~m~~ 169 (564)
...++||||.+...+..++..|... |+. +..|.||+..
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~--G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDM--GLKPVAHIEGGFGA 123 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHH--TCCSEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHc--CCCCeEEecCCHHH
Confidence 3678999999988888889999886 774 9999998653
No 157
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=38.38 E-value=22 Score=30.60 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=31.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCCH
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 169 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~~ 169 (564)
..++||||.+...+...+..|..+ |+ .+..+.||+..
T Consensus 91 ~~~ivvyC~~G~rs~~aa~~L~~~--G~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 91 AKELIFYCASGKRGGEAQKVASSH--GYSNTSLYPGSMND 128 (139)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTT--TCCSEEECTTHHHH
T ss_pred CCeEEEECCCCchHHHHHHHHHHc--CCCCeEEeCCcHHH
Confidence 578999999999998999999875 77 48889998653
No 158
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=37.97 E-value=54 Score=38.32 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=50.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecc-----cccCC-CcCCCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV-----ASRGL-DFNKAV 202 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv-----~arGL-D~pp~V 202 (564)
.+.++||.++++..+...+..|...++++.+..+||+.+ .+ ...|+|+|.- +.++. .+ ..+
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l-~~l 148 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTTEILRSMLYRGADLI-RDV 148 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEHHHHHHHHHHTCSGG-GGE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECHHHHHHHHHhCchhh-cCC
Confidence 357899999999999999999999877889999999875 23 6789999962 22333 45 567
Q ss_pred cEEEE
Q 008461 203 DWVVQ 207 (564)
Q Consensus 203 ~~VI~ 207 (564)
.+||.
T Consensus 149 ~lvVi 153 (997)
T 4a4z_A 149 EFVIF 153 (997)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 77775
No 159
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=37.77 E-value=28 Score=31.75 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=31.7
Q ss_pred cceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEec
Q 008461 34 LQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 72 (564)
Q Consensus 34 L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSA 72 (564)
-.++|+||.+.-+|......+..++..+....|++++|-
T Consensus 87 ~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith 125 (173)
T 3kta_B 87 APFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITL 125 (173)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 468999999999998877888888877766778777764
No 160
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=37.30 E-value=26 Score=30.59 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=29.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMK 168 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~ 168 (564)
...++||||.+...+...+..|... |+ .+..|.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~--G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEA--GITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHT--TCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHc--CCcceEEEcCChh
Confidence 3578999999988888888889886 77 5899999874
No 161
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=37.13 E-value=26 Score=30.59 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=30.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMK 168 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~ 168 (564)
..++||||.+...+...+..|... |+ .+..|.||+.
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSA--GFEHVSELKGGLA 92 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHT--TCCSEEECTTHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHc--CCCCEEEecCHHH
Confidence 578999999999999999999886 77 4888999854
No 162
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=37.02 E-value=4.8 Score=44.61 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=28.3
Q ss_pred ccCCCcEEEEcHHHHHHHHhcCC-----CCCCCCcceEEEeccCccCcc
Q 008461 5 HVNELNILVCTPGRLLQHMDETP-----NFDCSQLQILILDEADRILDV 48 (564)
Q Consensus 5 r~~~~~ILV~TPgrLl~~L~~~~-----~~~~~~L~~lVlDEAD~lld~ 48 (564)
....++|||+...-|++...... .+. ..=.++||||||.|.+.
T Consensus 172 ~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~-p~~~ivI~DEAHNL~d~ 219 (620)
T 4a15_A 172 ALPDADIVIAPYAYFLNRSVAEKFLSHWGVS-RNQIVIILDEAHNLPDI 219 (620)
T ss_dssp HGGGCSEEEEEHHHHTCHHHHHHHHHHHTCC-GGGEEEEETTGGGHHHH
T ss_pred HhhcCCEEEeCchhhcCHHHHHHHHHhhccC-cCCeEEEEECCCchHHH
Confidence 34578999999977665442211 111 23358999999998764
No 163
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=36.86 E-value=21 Score=30.51 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=31.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCCC-eeeccCCCCH
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 169 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~-v~~lHg~m~~ 169 (564)
...++||||.+...+..++..|... |+. +..+.||+..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~--G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHA--GFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHH--HCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHc--CCCCeEEeCCcHHH
Confidence 3579999999988888888888886 774 8889999754
No 164
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=36.40 E-value=1e+02 Score=32.80 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=50.8
Q ss_pred CcEEEEeCChHHHHHHHHHHHhh------CCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc-----cc--CCC
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKL------RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA-----SR--GLD 197 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l------~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~-----ar--GLD 197 (564)
.++||.++|+..+..+++.+..+ .+++.+..++|+.... ..+..+.. ...|+|||.-. .+ ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFR---AAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHH---HHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHH---HHHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 48999999999999999888764 1345677788877644 34455556 78999999732 22 234
Q ss_pred cCCCCcEEEE
Q 008461 198 FNKAVDWVVQ 207 (564)
Q Consensus 198 ~pp~V~~VI~ 207 (564)
+ ..+++||.
T Consensus 224 ~-~~~~~lVi 232 (563)
T 3i5x_A 224 F-RFVDYKVL 232 (563)
T ss_dssp C-TTCCEEEE
T ss_pred c-ccceEEEE
Confidence 5 56888775
No 165
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=36.33 E-value=28 Score=35.02 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=49.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC---CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc-------ccCCCcC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR---PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA-------SRGLDFN 199 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~---~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~-------arGLD~p 199 (564)
..++||.++|+..+..+++.+..+. +++.+...+|+..... ... ...|+|+|.-. ...+++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ivv~T~~~l~~~~~~~~~~~~- 166 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDP- 166 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCSSCG-
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------hhcCCCCEEEECchHHHHHHHhcCCcCh-
Confidence 4489999999999999988887753 4667777777654221 113 56899999632 135677
Q ss_pred CCCcEEEEcC
Q 008461 200 KAVDWVVQVD 209 (564)
Q Consensus 200 p~V~~VI~~d 209 (564)
..+++||.=.
T Consensus 167 ~~~~~iViDE 176 (412)
T 3fht_A 167 KKIKVFVLDE 176 (412)
T ss_dssp GGCCEEEEET
T ss_pred hhCcEEEEeC
Confidence 6788888533
No 166
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=35.50 E-value=32 Score=34.33 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=25.0
Q ss_pred CCcceEEEeccCc-cCcccHHHHHHHHHHhCCCCCcEEEEeccC
Q 008461 32 SQLQILILDEADR-ILDVGFKKALNAIVSQLPKHRQTFLFSATQ 74 (564)
Q Consensus 32 ~~L~~lVlDEAD~-lld~gf~~~l~~Il~~lp~~~Q~llfSATl 74 (564)
..-+++||||+|. +.. ...+.+..+++..|+...+++++.++
T Consensus 75 ~~~kvvii~~~~~kl~~-~~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNA-AINEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp CSCEEEEEECCSSCCCT-THHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred cCCeEEEEECCCCCCCh-HHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 4567888888887 543 34555666666555454455444333
No 167
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=35.40 E-value=35 Score=31.39 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=29.4
Q ss_pred CCCcceEEEeccCcc--CcccHHHHHHHHHHhCCCCCcEEEEeccCC
Q 008461 31 CSQLQILILDEADRI--LDVGFKKALNAIVSQLPKHRQTFLFSATQT 75 (564)
Q Consensus 31 ~~~L~~lVlDEAD~l--ld~gf~~~l~~Il~~lp~~~Q~llfSATl~ 75 (564)
..+.++||+||+..+ .+..|...+..++... ..+++-++|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecC
Confidence 466789999999877 5666877777777643 23555566754
No 168
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=35.35 E-value=58 Score=29.04 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=26.2
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
..-.+|||||+|.+... ....+..++...+....+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999987653 3556666777766555555544
No 169
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=34.40 E-value=23 Score=34.86 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=27.7
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
....+|||||+|.+........+..+++..+...++++.+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999999863334566677777666566666643
No 170
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=34.16 E-value=28 Score=31.00 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=27.2
Q ss_pred CCcceEEEeccCcc-CcccHHHHHHHHHHhCC-CCCcEEEEeccCCh
Q 008461 32 SQLQILILDEADRI-LDVGFKKALNAIVSQLP-KHRQTFLFSATQTK 76 (564)
Q Consensus 32 ~~L~~lVlDEAD~l-ld~gf~~~l~~Il~~lp-~~~Q~llfSATl~~ 76 (564)
.+..+|||||++.. ++......+..++.... ....+++.|...+.
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 35689999999953 44444566667776554 34445554444443
No 171
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=34.06 E-value=19 Score=30.57 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=30.2
Q ss_pred CCcEEEEeCChHH--HHHHHHHHHhhCCCCCeeeccCCCCH
Q 008461 131 NSKILVFLTSCKQ--VKYVFEAFKKLRPGIPLMCLYGRMKQ 169 (564)
Q Consensus 131 ~~k~IVF~~t~k~--v~~l~e~L~~l~~gi~v~~lHg~m~~ 169 (564)
..++||||.+-.. +..++..|... |+.+..+.||+..
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~--G~~v~~l~GG~~~ 109 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSA--GFEAYELAGALEG 109 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHH--TCEEEEETTHHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHc--CCeEEEeCCcHHH
Confidence 5789999998776 77888888886 8888889998654
No 172
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=34.04 E-value=36 Score=33.07 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=22.0
Q ss_pred ceEEEeccCccCcc--------cHHHHHHHHHHhCCCCCcEEEEe
Q 008461 35 QILILDEADRILDV--------GFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 35 ~~lVlDEAD~lld~--------gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
.+|+|||+|.+... .....+..++...+....+++.+
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 58999999988622 23345555565554444444433
No 173
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=33.63 E-value=1e+02 Score=26.05 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=37.3
Q ss_pred EEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc
Q 008461 134 ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 181 (564)
Q Consensus 134 ~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~ 181 (564)
.+||.+...-...+...++. .|+.+..+++++....|.+-++.|..
T Consensus 5 fvvfssdpeilkeivreikr--qgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKR--QGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHH--TTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHHHh--CCeEEEEEecCchHHHHHHHHHHHHH
Confidence 45677767767777777766 49999999999999999999999985
No 174
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=33.51 E-value=26 Score=30.37 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=31.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCCH
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 169 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~~ 169 (564)
...++||||.+...+...+..|... |+ .+..+.||+..
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~--G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREY--GFKTIYNSEGGMDK 119 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHH--TCSCEEEESSCHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHc--CCcceEEEcCcHHH
Confidence 3679999999988888888888886 77 58899999653
No 175
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=33.38 E-value=1.2e+02 Score=32.61 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=51.3
Q ss_pred CcEEEEeCChHHHHHHHHHHHhhC------CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc-----cc--CCC
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKLR------PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA-----SR--GLD 197 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l~------~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~-----ar--GLD 197 (564)
.++||.++|+..+..+++.+..+. +.+.+..++|+.... ..+..+.. ...|+|||.-. .+ ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFR---AAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHH---HHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHH---HHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 489999999999999998887642 456677788876644 34455656 78999999632 22 335
Q ss_pred cCCCCcEEEE
Q 008461 198 FNKAVDWVVQ 207 (564)
Q Consensus 198 ~pp~V~~VI~ 207 (564)
+ ..+++||.
T Consensus 173 ~-~~~~~lVi 181 (579)
T 3sqw_A 173 F-RFVDYKVL 181 (579)
T ss_dssp C-TTCCEEEE
T ss_pred c-ccCCEEEE
Confidence 5 66888775
No 176
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=33.32 E-value=33 Score=29.42 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=30.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCC-eeeccCCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMK 168 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~-v~~lHg~m~ 168 (564)
..++||||.+-......+..|..+ |+. +..+.|++.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~--G~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALN--GFKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHH--TCSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHc--CCcceEEecCCcc
Confidence 578999999988888888888886 774 888999984
No 177
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=33.31 E-value=39 Score=27.81 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=31.0
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCC
Q 008461 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 168 (564)
Q Consensus 129 ~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~ 168 (564)
....++||||.+...+...+..|... |+....+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~--G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHEL--GYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHT--TCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHC--CCCEEEecCCHH
Confidence 34678999999998888899999886 665478889865
No 178
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=33.16 E-value=31 Score=34.34 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=24.3
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEE
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llf 70 (564)
...+++||||||+|.... .+.+..+++.-|+...++++
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~ 118 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLN 118 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEE
Confidence 567899999999986543 34555566654444444444
No 179
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=32.82 E-value=50 Score=32.78 Aligned_cols=71 Identities=8% Similarity=0.093 Sum_probs=49.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc------ccCCCcCC
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA------SRGLDFNK 200 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~------arGLD~pp 200 (564)
.+.++||.++|+..+..+++.+..+. .++.+..++|+.... ... ...|+|+|.-. ...+++ .
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~T~~~l~~~~~~~~~~~-~ 144 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK--------NKQINAQVIVGTPGTVLDLMRRKLMQL-Q 144 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT--------TSCBCCSEEEECHHHHHHHHHTTCBCC-T
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh--------hccCCCCEEEEcHHHHHHHHHcCCccc-c
Confidence 35689999999999999999998753 355666777654321 112 67899999632 344667 7
Q ss_pred CCcEEEEcC
Q 008461 201 AVDWVVQVD 209 (564)
Q Consensus 201 ~V~~VI~~d 209 (564)
.+++||.=.
T Consensus 145 ~~~~iIiDE 153 (395)
T 3pey_A 145 KIKIFVLDE 153 (395)
T ss_dssp TCCEEEEET
T ss_pred cCCEEEEEC
Confidence 788888533
No 180
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=32.09 E-value=34 Score=37.93 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=52.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC-CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----ccccCCC-cCCCCc
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRGLD-FNKAVD 203 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~-~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~arGLD-~pp~V~ 203 (564)
+.++|+.++++..+...+..++.+. .|+.+..++|+.....+. .....|+|+|+ .+.++.. + ..++
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~------~~~~~Iiv~Tpe~l~~~l~~~~~~l-~~~~ 140 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEH------LGDCDIIVTTSEKADSLIRNRASWI-KAVS 140 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSSC------STTCSEEEEEHHHHHHHHHTTCSGG-GGCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchhh------ccCCCEEEECHHHHHHHHHcChhHH-hhcC
Confidence 6799999999999999999885432 278899999987654320 11678999996 3334433 6 6788
Q ss_pred EEEEcC
Q 008461 204 WVVQVD 209 (564)
Q Consensus 204 ~VI~~d 209 (564)
+||.=.
T Consensus 141 ~vIiDE 146 (702)
T 2p6r_A 141 CLVVDE 146 (702)
T ss_dssp EEEETT
T ss_pred EEEEee
Confidence 888633
No 181
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=31.78 E-value=91 Score=29.36 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=44.6
Q ss_pred ccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-eeeccCCCCHHHHHHHHHHHhccCCeEEEec
Q 008461 116 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 190 (564)
Q Consensus 116 ~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~-v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd 190 (564)
..|......++... +.++||++++...+..+++.|..+ ++. +..++|+... ...|+|+|.
T Consensus 119 ~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~--~~~~v~~~~g~~~~------------~~~i~v~T~ 179 (237)
T 2fz4_A 119 SGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIF--GEEYVGEFSGRIKE------------LKPLTVSTY 179 (237)
T ss_dssp TTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGG--CGGGEEEESSSCBC------------CCSEEEEEH
T ss_pred CCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhC--CCCeEEEEeCCCCC------------cCCEEEEeH
Confidence 34555555455444 689999999999999999999874 777 8888887532 467888885
No 182
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=31.21 E-value=39 Score=37.61 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=52.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC-CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----ccccCCC-cCCCCc
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRGLD-FNKAVD 203 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~-~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~arGLD-~pp~V~ 203 (564)
+.++|+.++++..+..++..+..+. .|+.+..++|+.....+. .....|+|+|+ .+.++.. + ..++
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~------~~~~~Iiv~Tpe~l~~~~~~~~~~l-~~~~ 140 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW------LGKYDIIIATAEKFDSLLRHGSSWI-KDVK 140 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG------GGGCSEEEECHHHHHHHHHHTCTTG-GGEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc------cCCCCEEEECHHHHHHHHHcChhhh-hcCC
Confidence 6899999999999999999886432 278999999987754431 12678999997 2233333 5 6688
Q ss_pred EEEEcC
Q 008461 204 WVVQVD 209 (564)
Q Consensus 204 ~VI~~d 209 (564)
+||.=.
T Consensus 141 ~vIiDE 146 (720)
T 2zj8_A 141 ILVADE 146 (720)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 887633
No 183
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=30.84 E-value=41 Score=33.62 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=18.2
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHh
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQ 60 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~ 60 (564)
..-+++||||||.|.... .+.+..+++.
T Consensus 107 ~~~kvviIdead~l~~~a-~naLLk~lEe 134 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAA-ANALLKTLEE 134 (334)
T ss_dssp SSCEEEEESCGGGBCHHH-HHHHHHHHTS
T ss_pred CCcEEEEECchhhcCHHH-HHHHHHHhcC
Confidence 567899999999986532 3334444443
No 184
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=30.70 E-value=26 Score=30.67 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=30.3
Q ss_pred CCcEEEEeCCh--HHHHHHHHHHHhhCCCCCeeeccCCCCH
Q 008461 131 NSKILVFLTSC--KQVKYVFEAFKKLRPGIPLMCLYGRMKQ 169 (564)
Q Consensus 131 ~~k~IVF~~t~--k~v~~l~e~L~~l~~gi~v~~lHg~m~~ 169 (564)
..++||||.+- ..+..++..|... |+.+..|.||+..
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~--G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQL--GFRVKELIGGIEY 110 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHT--TCEEEEEESHHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHC--CCeEEEeCCcHHH
Confidence 57899999987 5778888888875 8889999998653
No 185
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=29.38 E-value=40 Score=30.52 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=21.9
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
.-.+|||||+|.+.. .....+..++...+....+++.|
T Consensus 126 ~~~vlviDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR-HSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSEEEEEETGGGSCH-HHHHHHHHHHHSCCTTEEEEEEE
T ss_pred CceEEEEECcccccH-HHHHHHHHHHhcCCCceEEEEEe
Confidence 346899999998643 23444555555444444444443
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=29.37 E-value=36 Score=33.53 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=23.8
Q ss_pred CcceEEEeccCccCcc-cHHHHHHHHHHhCC-CCCcEEEEeccCC
Q 008461 33 QLQILILDEADRILDV-GFKKALNAIVSQLP-KHRQTFLFSATQT 75 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~-gf~~~l~~Il~~lp-~~~Q~llfSATl~ 75 (564)
+..+|+|||+|.+... .....+..++..+. ...+ ++++++.+
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~-iii~~~~~ 141 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQ-IILASDRH 141 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 3579999999998752 23344444544432 2344 44455533
No 187
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=29.25 E-value=79 Score=32.73 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-eeeccCCCCHHHHHHHHHHHhccCCeEEEec
Q 008461 117 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 190 (564)
Q Consensus 117 ~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~-v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd 190 (564)
.|.......+... +.++||.|+++..+...++.|..+ ++. +..+||+... ...|+|+|.
T Consensus 120 GKT~~~l~~i~~~-~~~~Lvl~P~~~L~~Q~~~~~~~~--~~~~v~~~~g~~~~------------~~~Ivv~T~ 179 (472)
T 2fwr_A 120 GKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIF--GEEYVGEFSGRIKE------------LKPLTVSTY 179 (472)
T ss_dssp CHHHHHHHHHHHH-CSCEEEEESSHHHHHHHHHHGGGG--CGGGEEEBSSSCBC------------CCSEEEEEH
T ss_pred CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHhC--CCcceEEECCCcCC------------cCCEEEEEc
Confidence 4444444444333 689999999999999999999884 788 9999998642 467888886
No 188
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=29.16 E-value=30 Score=35.36 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=27.9
Q ss_pred cceEEEeccCccCc---ccHHHHHHHHHHhCCCCCcEEEEeccCCh
Q 008461 34 LQILILDEADRILD---VGFKKALNAIVSQLPKHRQTFLFSATQTK 76 (564)
Q Consensus 34 L~~lVlDEAD~lld---~gf~~~l~~Il~~lp~~~Q~llfSATl~~ 76 (564)
-.++|+||||.++. ..+...+..+++...+ .-..++-||+..
T Consensus 263 ~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~ 307 (392)
T 4ag6_A 263 RTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNV 307 (392)
T ss_dssp TCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCG
T ss_pred cEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCH
Confidence 46899999999985 3356667777776643 334455566554
No 189
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=29.00 E-value=86 Score=35.44 Aligned_cols=62 Identities=19% Similarity=0.350 Sum_probs=42.5
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHh--------c-cCCeEEEecc
Q 008461 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC--------E-KRSVLFCTDV 191 (564)
Q Consensus 129 ~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~--------~-~~~VLVaTdv 191 (564)
...+++||.|++ ..+......|.++.|++.+..+||..........+..+. . ...|+|+|--
T Consensus 284 ~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~ 354 (800)
T 3mwy_W 284 RQNGPHIIVVPL-STMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYE 354 (800)
T ss_dssp SCCSCEEEECCT-TTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTT
T ss_pred CCCCCEEEEECc-hHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHH
Confidence 346889999994 456666777788889999999999866554433333221 1 4568888863
No 190
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=28.31 E-value=75 Score=33.22 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=39.8
Q ss_pred HcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecc
Q 008461 128 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 191 (564)
Q Consensus 128 ~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv 191 (564)
.....++||.|++. .+....+.|.++.|+..+..+||+... ... ...|+|+|.-
T Consensus 83 ~~~~~~~LIv~P~~-l~~qw~~e~~~~~~~~~v~~~~g~~~~---------~~~~~~~ivi~t~~ 137 (500)
T 1z63_A 83 ENELTPSLVICPLS-VLKNWEEELSKFAPHLRFAVFHEDRSK---------IKLEDYDIILTTYA 137 (500)
T ss_dssp TTCCSSEEEEECST-THHHHHHHHHHHCTTSCEEECSSSTTS---------CCGGGSSEEEEEHH
T ss_pred cCCCCCEEEEccHH-HHHHHHHHHHHHCCCceEEEEecCchh---------ccccCCcEEEeeHH
Confidence 33457999999964 667777888888888999999997532 112 6678888864
No 191
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=27.77 E-value=49 Score=33.29 Aligned_cols=40 Identities=8% Similarity=0.164 Sum_probs=23.5
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHh--CCC-CCcEEEEeccCC
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQ--LPK-HRQTFLFSATQT 75 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~--lp~-~~Q~llfSATl~ 75 (564)
..-+|||||+|++.+. ..+..+++. .+. ..-+++.++|+.
T Consensus 132 ~~~ii~lDE~d~l~~q---~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 132 RKTLILIQNPENLLSE---KILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CEEEEEEECCSSSCCT---HHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CceEEEEecHHHhhcc---hHHHHHHhcccccCCcEEEEEEecCcc
Confidence 3458999999999843 344444432 221 234556677754
No 192
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=27.07 E-value=89 Score=36.57 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=49.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----ccccC-CCcCCCCc
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAVD 203 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~arG-LD~pp~V~ 203 (564)
.+.++||.++|+.-+...+..|...+. .+..++|+.+.. ....|+|+|. .+.+| ..+ ..+.
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~~--~vglltGd~~~~----------~~~~IvV~Tpe~L~~~L~~~~~~l-~~l~ 194 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEFG--DVGLMTGDITIN----------PDAGCLVMTTEILRSMLYRGSEVM-REVA 194 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHHS--CEEEECSSCEEC----------TTCSEEEEEHHHHHHHHHHTCTTG-GGEE
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHhC--CEEEEeCCCccC----------CCCCEEEEcHHHHHHHHHcCcchh-hcCC
Confidence 367999999999999999999988744 688899987521 1578999997 33444 555 7788
Q ss_pred EEEE
Q 008461 204 WVVQ 207 (564)
Q Consensus 204 ~VI~ 207 (564)
+||.
T Consensus 195 lVVi 198 (1010)
T 2xgj_A 195 WVIF 198 (1010)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 193
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=26.70 E-value=40 Score=37.42 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=51.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC-CCCCeeeccCCCCHHHHHHHHHHHhccCCeEEEec-----ccccCCC-cCCCCc
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRGLD-FNKAVD 203 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~-~gi~v~~lHg~m~~~~R~~i~~~F~~~~~VLVaTd-----v~arGLD-~pp~V~ 203 (564)
+.++||.++++..+..++..++.+. .|+.+..++|+.....+. .....|+|+|+ .+..+.. + ..++
T Consensus 75 ~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~------~~~~~Iiv~Tpe~l~~~~~~~~~~l-~~~~ 147 (715)
T 2va8_A 75 GGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAW------LKNYDIIITTYEKLDSLWRHRPEWL-NEVN 147 (715)
T ss_dssp CSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGG------GGGCSEEEECHHHHHHHHHHCCGGG-GGEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhh------cCCCCEEEEcHHHHHHHHhCChhHh-hccC
Confidence 6799999999999999998885432 278899999987654321 12678999997 3333433 5 6788
Q ss_pred EEEEcC
Q 008461 204 WVVQVD 209 (564)
Q Consensus 204 ~VI~~d 209 (564)
+||.=.
T Consensus 148 ~vIiDE 153 (715)
T 2va8_A 148 YFVLDE 153 (715)
T ss_dssp EEEECS
T ss_pred EEEEec
Confidence 888533
No 194
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=26.39 E-value=36 Score=35.51 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=46.9
Q ss_pred CcEEEEeCChHHHHHHHHHHHhh---CCCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccc-------cCCCcCC
Q 008461 132 SKILVFLTSCKQVKYVFEAFKKL---RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS-------RGLDFNK 200 (564)
Q Consensus 132 ~k~IVF~~t~k~v~~l~e~L~~l---~~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~a-------rGLD~pp 200 (564)
.++||.++|+..+..++..+..+ .+++.+....|+..... ... ...|+|+|.-.- ..+++ .
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~-~ 234 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDP-K 234 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCCCCG-G
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc-------cccCCCCEEEECchHHHHHHHhcCCcCc-c
Confidence 38999999999999987777664 34566666655533211 112 567999997432 36788 7
Q ss_pred CCcEEEEc
Q 008461 201 AVDWVVQV 208 (564)
Q Consensus 201 ~V~~VI~~ 208 (564)
.+.+||.=
T Consensus 235 ~~~~iViD 242 (479)
T 3fmp_B 235 KIKVFVLD 242 (479)
T ss_dssp GCCEEEEC
T ss_pred cCCEEEEE
Confidence 89988863
No 195
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=25.77 E-value=56 Score=34.16 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=25.1
Q ss_pred CcceEEEeccCccCcc-cHHHHHHHHHHhC-CCCCcEEEEec
Q 008461 33 QLQILILDEADRILDV-GFKKALNAIVSQL-PKHRQTFLFSA 72 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~-gf~~~l~~Il~~l-p~~~Q~llfSA 72 (564)
+..+|||||+|.+... .....+..++..+ ....++++.|.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 5679999999998864 3344555555543 33455555443
No 196
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=25.50 E-value=50 Score=31.92 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=32.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCCH
Q 008461 130 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 169 (564)
Q Consensus 130 ~~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~~ 169 (564)
...++||||.+...+...+..|..+ |+ .+..|.|++..
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~--G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATL--DVPNVKLYDGAWSE 267 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHT--TCSSCEEECCSCCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHHc--CCCCceeeCChHHH
Confidence 3678999999988888888899875 77 58899999874
No 197
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=25.20 E-value=44 Score=31.32 Aligned_cols=53 Identities=17% Similarity=0.335 Sum_probs=38.4
Q ss_pred CCcceEEEeccCccCcccH--HHHHHHHHHhCCCCCcEEEEeccCChhHHHHHHH
Q 008461 32 SQLQILILDEADRILDVGF--KKALNAIVSQLPKHRQTFLFSATQTKSVQDLARL 84 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf--~~~l~~Il~~lp~~~Q~llfSATl~~~v~~l~~~ 84 (564)
...++|||||+-..+..|+ ...+..++...|...-+|+.+--.|+.+.+++.+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~ 173 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADT 173 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSE
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcc
Confidence 5689999999965444432 3457777788887777888777788887776654
No 198
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=25.03 E-value=19 Score=31.61 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=11.2
Q ss_pred cceEEEeccCccC
Q 008461 34 LQILILDEADRIL 46 (564)
Q Consensus 34 L~~lVlDEAD~ll 46 (564)
-.+|||||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (187)
T 2p65_A 116 QVVMFIDEIHTVV 128 (187)
T ss_dssp SEEEEETTGGGGS
T ss_pred ceEEEEeCHHHhc
Confidence 3589999999986
No 199
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=24.55 E-value=58 Score=26.99 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=29.0
Q ss_pred cEEEEeCChHHHHHHHHHHHhhC-----CCCCeeeccCCCCH
Q 008461 133 KILVFLTSCKQVKYVFEAFKKLR-----PGIPLMCLYGRMKQ 169 (564)
Q Consensus 133 k~IVF~~t~k~v~~l~e~L~~l~-----~gi~v~~lHg~m~~ 169 (564)
++||||.+...+...+..|.... ....+..|.||+..
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~ 115 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMA 115 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHH
Confidence 89999999888888888887761 23468889998764
No 200
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=24.37 E-value=40 Score=32.35 Aligned_cols=39 Identities=23% Similarity=0.420 Sum_probs=23.6
Q ss_pred ceEEEeccCccC----------cccHHHHHHHHHHhC---CCCCcEEEEecc
Q 008461 35 QILILDEADRIL----------DVGFKKALNAIVSQL---PKHRQTFLFSAT 73 (564)
Q Consensus 35 ~~lVlDEAD~ll----------d~gf~~~l~~Il~~l---p~~~Q~llfSAT 73 (564)
.+|+|||+|.+. +......+..++..+ .....++++.+|
T Consensus 112 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 163 (285)
T 3h4m_A 112 SIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGAT 163 (285)
T ss_dssp EEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEEC
T ss_pred eEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 589999999884 223345555565543 333455555555
No 201
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=24.33 E-value=27 Score=32.62 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=22.1
Q ss_pred cceEEEeccCccCccc-HHHHHHHHHHhC----CCCCcEEEEecc
Q 008461 34 LQILILDEADRILDVG-FKKALNAIVSQL----PKHRQTFLFSAT 73 (564)
Q Consensus 34 L~~lVlDEAD~lld~g-f~~~l~~Il~~l----p~~~Q~llfSAT 73 (564)
-.+|||||||.++... .......++.++ ....++++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 4589999999985321 111011234443 234577777665
No 202
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=24.32 E-value=65 Score=31.54 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=34.8
Q ss_pred HHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CeeeccCCCCH
Q 008461 125 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 169 (564)
Q Consensus 125 ~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi-~v~~lHg~m~~ 169 (564)
.+......++||||.+...+...+..|... |+ .+..|.||+..
T Consensus 175 ~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~--Gf~nV~~L~GGi~a 218 (265)
T 4f67_A 175 NLIDKKDKKIAMFCTGGIRCEKTTAYMKEL--GFEHVYQLHDGILN 218 (265)
T ss_dssp HTGGGTTSCEEEECSSSHHHHHHHHHHHHH--TCSSEEEETTHHHH
T ss_pred hhhhCCCCeEEEEeCCChHHHHHHHHHHHc--CCCCEEEecCHHHH
Confidence 333345789999999999999999999886 77 68899998764
No 203
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=24.06 E-value=1.1e+02 Score=29.31 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=45.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhC--CCCCeeeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccC---CCcCCCCcE
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRG---LDFNKAVDW 204 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~--~gi~v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arG---LD~pp~V~~ 204 (564)
..++||.++|+..+...++.|.... ++..+..++|+..... -.. ...|+|+|.-.... ..+ ..+++
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~~~-~~~~~ 228 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKEWF-SQFGM 228 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGGGG-GGEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEchHHHHhhHHHHH-hhCCE
Confidence 4599999999999999999998763 2345677777754332 111 56799998732221 124 45666
Q ss_pred EEE
Q 008461 205 VVQ 207 (564)
Q Consensus 205 VI~ 207 (564)
||.
T Consensus 229 vIi 231 (282)
T 1rif_A 229 MMN 231 (282)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 204
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=23.30 E-value=1.1e+02 Score=32.18 Aligned_cols=69 Identities=9% Similarity=0.061 Sum_probs=43.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhhCCCCC--eeeccCCCCHHHHHHHHHHHhc-cCCeEEEeccc------ccCCCcCCC
Q 008461 131 NSKILVFLTSCKQVKYVFEAFKKLRPGIP--LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA------SRGLDFNKA 201 (564)
Q Consensus 131 ~~k~IVF~~t~k~v~~l~e~L~~l~~gi~--v~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~------arGLD~pp~ 201 (564)
+.++||.++++..+..+++.|........ +....++... .-.. ...|+|+|.-. ...+++ ..
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Ivv~T~~~l~~~l~~~~~~~-~~ 259 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVP--------KGAKIDAQIVIGTPGTVMDLMKRRQLDA-RD 259 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCC-TT
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccc--------ccccCCCCEEEECHHHHHHHHHcCCccc-cC
Confidence 45899999999999999999988754333 2333332111 1113 67899999632 235677 77
Q ss_pred CcEEEEc
Q 008461 202 VDWVVQV 208 (564)
Q Consensus 202 V~~VI~~ 208 (564)
+++||.=
T Consensus 260 ~~lIIiD 266 (508)
T 3fho_A 260 IKVFVLD 266 (508)
T ss_dssp CCEEEEC
T ss_pred CCEEEEe
Confidence 8888853
No 205
>2zqk_M Putative translocated intimin receptor protein (translocated intimin receptor TIR)...; protein-protein complex; 2.80A {Escherichia coli} PDB: 2zwk_B 1f02_T
Probab=23.23 E-value=42 Score=25.71 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=17.7
Q ss_pred CCCceEEecCCCCCCCcchhhhh
Q 008461 412 PLGTRLVFDEECNTVPPLAMLAD 434 (564)
Q Consensus 412 ~~~~~~~f~~~~~~~~~~~~~~~ 434 (564)
+.|+||..|+-||++|.. +|.|
T Consensus 24 pdnqkvnide~gnaipsg-~lkd 45 (77)
T 2zqk_M 24 PDNQKVNIDELGNAIPSG-VLKD 45 (77)
T ss_dssp GGGEEEEECTTSCEEEEE-EECH
T ss_pred cccceecccccCCcCCcc-hhhH
Confidence 458899999999999877 5544
No 206
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=22.36 E-value=1.3e+02 Score=27.12 Aligned_cols=36 Identities=8% Similarity=0.125 Sum_probs=22.5
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEec
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 72 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSA 72 (564)
+.++|||||||.+. .++...+..+... +..++++.-
T Consensus 76 ~~dvviIDE~Q~~~-~~~~~~l~~l~~~---~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFFN-PSLFEVVKDLLDR---GIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGSC-TTHHHHHHHHHHT---TCEEEEEEE
T ss_pred CCCEEEEECcccCC-HHHHHHHHHHHHC---CCCEEEEee
Confidence 56899999999863 3355555555543 455554433
No 207
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=22.19 E-value=66 Score=31.11 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=26.0
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
..-.+|||||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999998643 3555666677666555555543
No 208
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=21.84 E-value=81 Score=27.23 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=17.1
Q ss_pred cceEEEeccCccCc-------ccHHHHHHHHHH
Q 008461 34 LQILILDEADRILD-------VGFKKALNAIVS 59 (564)
Q Consensus 34 L~~lVlDEAD~lld-------~gf~~~l~~Il~ 59 (564)
-.+|||||+|.+.. ......+..++.
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~ 148 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKADGAMDAGNMLKPALA 148 (195)
T ss_dssp TEEEEEETGGGGTT------CCCCHHHHHHHHH
T ss_pred CeEEEEeCHHHHhccCcccchHHHHHHHHHhhc
Confidence 35899999999863 333455555554
No 209
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=21.68 E-value=1.9e+02 Score=27.26 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=32.6
Q ss_pred cEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 10 NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 10 ~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
.+-+.++..+++.+... ..-...++||||||+.+.. .....+..+.. . ..+++++.
T Consensus 68 ~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~l~~-~~ve~l~~L~~-~--gi~Vil~G 123 (223)
T 2b8t_A 68 SVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFFDD-RICEVANILAE-N--GFVVIISG 123 (223)
T ss_dssp CEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGSCT-HHHHHHHHHHH-T--TCEEEEEC
T ss_pred ccccCCHHHHHHHHHHH--hhCCCCCEEEEecCccCcH-HHHHHHHHHHh-C--CCeEEEEe
Confidence 45567777887777653 2224578999999997543 22333433333 2 45555543
No 210
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=21.42 E-value=3.3e+02 Score=23.12 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=32.1
Q ss_pred EcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCC
Q 008461 14 CTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQT 75 (564)
Q Consensus 14 ~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~ 75 (564)
.+|+.|++.....+.| ..=++|+|..+...+.......+..++...++...+|+....+.
T Consensus 59 ~~~~~l~~~~~s~slF--~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld 118 (140)
T 1jql_B 59 TDWNAIFSLCQAMSLF--ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLS 118 (140)
T ss_dssp CCHHHHHHHHHCCCTT--CCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCC
T ss_pred CCHHHHHHHHhcCCCC--CCCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcC
Confidence 4566666655554433 45566666665543333345556666666555555555544333
No 211
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=21.37 E-value=52 Score=35.87 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=28.0
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEec
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSA 72 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSA 72 (564)
...++||+|||+++. ...+..++..++...+++++.-
T Consensus 278 ~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvGD 314 (574)
T 3e1s_A 278 APYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVGD 314 (574)
T ss_dssp CSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEEC
T ss_pred ccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEec
Confidence 357899999999764 3467778888887778877643
No 212
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=21.08 E-value=54 Score=31.34 Aligned_cols=44 Identities=30% Similarity=0.526 Sum_probs=24.7
Q ss_pred CcceEEEeccCccCccc-----H-HHHHHHHHHhCC----CCCcEEEEeccCCh
Q 008461 33 QLQILILDEADRILDVG-----F-KKALNAIVSQLP----KHRQTFLFSATQTK 76 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~g-----f-~~~l~~Il~~lp----~~~Q~llfSATl~~ 76 (564)
.-.+|||||+|.++... + ...+..+...+. ...+++++.+|-..
T Consensus 124 ~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~ 177 (272)
T 1d2n_A 124 QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRK 177 (272)
T ss_dssp SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCH
T ss_pred CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCCh
Confidence 46799999999984321 1 222333333332 34567677777444
No 213
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=21.04 E-value=84 Score=31.10 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=23.2
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEE
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLF 70 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llf 70 (564)
..-.+|||||+|.+... ....+..++...|....+++.
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~ 155 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEE
Confidence 44579999999987643 344555556555444334443
No 214
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.92 E-value=66 Score=31.91 Aligned_cols=39 Identities=23% Similarity=0.481 Sum_probs=27.5
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
...+++|+||+|.+... ....+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34689999999987653 4566777777777666655543
No 215
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.88 E-value=48 Score=32.10 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=25.5
Q ss_pred CcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 33 QLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 33 ~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
.-.+|||||+|.+.... ...+..++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 46799999999986532 445666666666555555554
No 216
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=20.86 E-value=60 Score=31.46 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHh
Q 008461 117 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKK 153 (564)
Q Consensus 117 ~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~ 153 (564)
.++...+.++....++.-|+|++|+.++..+...+..
T Consensus 51 ~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~V~~~A~ 87 (241)
T 2xzm_B 51 QKIKLAARVIAAVQHPEDVMVVCSRIYGQRAAIKFAG 87 (241)
T ss_dssp HHHHHHHHHHHHCSSGGGEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHH
Confidence 3444555677664445667899999998777665544
No 217
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.78 E-value=66 Score=31.61 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=26.3
Q ss_pred CCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEe
Q 008461 32 SQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFS 71 (564)
Q Consensus 32 ~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfS 71 (564)
....+|||||+|.+... ....+..+++..+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 34579999999988653 3456666777766555555544
No 218
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=20.68 E-value=60 Score=32.19 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=19.6
Q ss_pred cceEEEeccCccCccc-HHHHHHHHHHhC
Q 008461 34 LQILILDEADRILDVG-FKKALNAIVSQL 61 (564)
Q Consensus 34 L~~lVlDEAD~lld~g-f~~~l~~Il~~l 61 (564)
-.+|||||+|.+.... ....+..++...
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 4589999999986542 355666666654
No 219
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=20.21 E-value=69 Score=32.64 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=32.2
Q ss_pred ceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEecc
Q 008461 35 QILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSAT 73 (564)
Q Consensus 35 ~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSAT 73 (564)
.+|||||...=+|......+..++..+.+..|+++.|--
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~ 355 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHL 355 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 899999999999988888888888887766777776654
Done!