BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008463
(564 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13 OS=Arabidopsis
thaliana GN=MBD13 PE=2 SV=1
Length = 746
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 70/94 (74%), Gaps = 7/94 (7%)
Query: 16 RVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVT-KTGRKVRRDPYYIDPASGYIFRS 74
+VE+RVRKNG+KDK+I+EK GLP GW K++++T ++GRK RRDP++IDP S YIF+S
Sbjct: 15 KVEIRVRKNGRKDKVIVEKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQS 74
Query: 75 MKDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDD 108
KDA RYVETG IG A K K E D+EDD
Sbjct: 75 FKDASRYVETGNIGHYARKLK------ESDIEDD 102
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 60/124 (48%), Gaps = 23/124 (18%)
Query: 370 SPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKR 429
S D DL DPCIAFAIKTLTGE+ L A
Sbjct: 595 SSAFDSTLADLCKDPCIAFAIKTLTGESL--------------------CLLNTPAISSN 634
Query: 430 ENEGEEKQENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIP 489
KQ+ ++ + E NV + EKL P P A+IW+DPCI+FAIKTLTGAIP
Sbjct: 635 PINNHTKQKGVSFTPETPGNVNT---CSEKLVFPSPPPGANIWQDPCIDFAIKTLTGAIP 691
Query: 490 VGND 493
+G D
Sbjct: 692 IGLD 695
>sp|Q9SNC0|MBD5_ARATH Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis
thaliana GN=MBD5 PE=1 SV=1
Length = 182
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 38 DGLPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 96
+ LPP W EI+V +G K D +Y +P +G FRS + + Y+E G + + K +
Sbjct: 33 NWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAE 92
Query: 97 DGNQDEEDLE 106
+G+ E E
Sbjct: 93 NGDSHSEHSE 102
>sp|Q9LTJ1|MBD6_ARATH Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis
thaliana GN=MBD6 PE=1 SV=1
Length = 225
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 40 LPPGWTKEIKVTKTGRKVRR-DPYYIDPASGYIFRSMKDAVRYVETG 85
LPPGW E K+ +G D YY +P +G FRS + + Y+E G
Sbjct: 81 LPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLEHG 127
>sp|Q9UBB5|MBD2_HUMAN Methyl-CpG-binding domain protein 2 OS=Homo sapiens GN=MBD2 PE=1
SV=1
Length = 411
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 39 GLPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYV 82
LPPGW KE + K+G + D YY P SG FRS RY+
Sbjct: 154 ALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYL 197
>sp|Q838L2|RHAA_ENTFA L-rhamnose isomerase OS=Enterococcus faecalis (strain ATCC 700802 /
V583) GN=rhaA PE=3 SV=1
Length = 428
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 439 NLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDW--DV 496
N+ E + ++L E+L+ D PFADIW C E +P+G DW DV
Sbjct: 356 NVLKEAELIGDFTTRLALTEELK---DFPFADIWNYYCQE-------NHVPIGLDWLTDV 405
Query: 497 QDYFQQQINSSQTQPNNNFCQ 517
Q+Y + + + Q + C+
Sbjct: 406 QEYEKVILPTRQLPTGKDSCR 426
>sp|Q9Z2E1|MBD2_MOUSE Methyl-CpG-binding domain protein 2 OS=Mus musculus GN=Mbd2 PE=2
SV=2
Length = 414
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 39 GLPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYV 82
LPPGW KE + K+G + D YY P SG FRS RY+
Sbjct: 157 ALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYL 200
>sp|Q00566|MECP2_RAT Methyl-CpG-binding protein 2 OS=Rattus norvegicus GN=Mecp2 PE=1
SV=1
Length = 492
Score = 37.0 bits (84), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 40 LPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 96
LP GWT+++K K+GR + D Y I+P G FRS + + Y E ++G + P D
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE--KVGDTSLDPND 154
>sp|Q9Z2D6|MECP2_MOUSE Methyl-CpG-binding protein 2 OS=Mus musculus GN=Mecp2 PE=1 SV=1
Length = 484
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 40 LPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 96
LP GWT+++K K+GR + D Y I+P G FRS + + Y E ++G + P D
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE--KVGDTSLDPND 154
>sp|Q95LG8|MECP2_MACFA Methyl-CpG-binding protein 2 OS=Macaca fascicularis GN=MECP2 PE=2
SV=1
Length = 486
Score = 36.6 bits (83), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 40 LPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 96
LP GWT+++K K+GR + D Y I+P G FRS + + Y E ++G + P D
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE--KVGDTSLDPND 154
>sp|P51608|MECP2_HUMAN Methyl-CpG-binding protein 2 OS=Homo sapiens GN=MECP2 PE=1 SV=1
Length = 486
Score = 36.6 bits (83), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 40 LPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 96
LP GWT+++K K+GR + D Y I+P G FRS + + Y E ++G + P D
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE--KVGDTSLDPND 154
>sp|C7GQI8|RDH54_YEAS2 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain JAY291) GN=RDH54 PE=3 SV=1
Length = 924
Score = 32.3 bits (72), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 103 EDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAGTRECISHSEHT 162
E++E + N T + + T T T K++E A ++DA S R+C+ H +H
Sbjct: 826 EEIEYPETNQQQNTVELRKRSTTTWTSALDLQKKMNEAATNDDAKKSQYIRQCLVHYKHI 885
Query: 163 --SGQVEAGTELRGSNLSEAKDSDKMDYRK 190
+ Q E E+ + +E KDS + K
Sbjct: 886 DPARQDELFDEVITDSFTELKDSITFAFVK 915
>sp|P38086|RDH54_YEAST DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RDH54 PE=1
SV=4
Length = 958
Score = 32.3 bits (72), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 103 EDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAGTRECISHSEHT 162
E++E + N T + + T T T K++E A ++DA S R+C+ H +H
Sbjct: 860 EEIEYPETNQQQNTVELRKRSTTTWTSALDLQKKMNEAATNDDAKKSQYIRQCLVHYKHI 919
Query: 163 --SGQVEAGTELRGSNLSEAKDSDKMDYRK 190
+ Q E E+ + +E KDS + K
Sbjct: 920 DPARQDELFDEVITDSFTELKDSITFAFVK 949
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.127 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,962,295
Number of Sequences: 539616
Number of extensions: 9291684
Number of successful extensions: 30132
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 237
Number of HSP's that attempted gapping in prelim test: 29395
Number of HSP's gapped (non-prelim): 880
length of query: 564
length of database: 191,569,459
effective HSP length: 123
effective length of query: 441
effective length of database: 125,196,691
effective search space: 55211740731
effective search space used: 55211740731
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 64 (29.3 bits)