Query 008463
Match_columns 564
No_of_seqs 79 out of 81
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 04:09:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ky8_A Methyl-CPG-binding doma 99.3 1.5E-12 5E-17 106.3 4.8 48 36-84 9-57 (72)
2 1d9n_A Methyl-CPG-binding prot 99.3 1.1E-12 3.7E-17 108.2 3.9 48 36-84 7-55 (75)
3 3c2i_A Methyl-CPG-binding prot 99.2 5.1E-12 1.8E-16 108.9 5.4 48 36-84 20-68 (97)
4 3vxv_A Methyl-CPG-binding doma 99.2 1.4E-11 4.7E-16 100.0 5.1 49 36-85 2-51 (69)
5 1ub1_A MECP2, attachment regio 99.1 7.6E-11 2.6E-15 106.5 5.1 62 22-84 17-82 (133)
6 2kxq_A E3 ubiquitin-protein li 95.9 0.0066 2.3E-07 50.3 4.0 54 8-70 7-79 (90)
7 1tk7_A CG4244-PB; WW domain, n 94.8 0.046 1.6E-06 45.1 5.8 56 6-70 8-80 (88)
8 3c2i_A Methyl-CPG-binding prot 89.4 0.27 9.1E-06 42.6 3.7 20 8-27 21-40 (97)
9 1d9n_A Methyl-CPG-binding prot 88.2 0.26 8.9E-06 40.7 2.6 20 7-26 7-26 (75)
10 2ky8_A Methyl-CPG-binding doma 83.4 0.61 2.1E-05 38.1 2.5 17 10-26 12-28 (72)
11 1ub1_A MECP2, attachment regio 81.8 1.5 5.1E-05 40.0 4.6 20 8-27 35-54 (133)
12 2l5f_A PRE-mRNA-processing fac 76.9 2.4 8.3E-05 35.1 4.1 64 8-80 9-86 (92)
13 3vxv_A Methyl-CPG-binding doma 76.4 1.4 4.8E-05 35.7 2.5 18 9-26 4-21 (69)
14 2ysh_A GAS-7, growth-arrest-sp 68.3 4.2 0.00014 28.8 3.1 28 36-70 4-31 (40)
15 2ysg_A Syntaxin-binding protei 68.1 3.3 0.00011 29.7 2.6 18 10-29 7-24 (40)
16 1ymz_A CC45; artificial protei 68.0 3.2 0.00011 30.0 2.5 27 37-70 6-32 (43)
17 2ysg_A Syntaxin-binding protei 67.0 3.9 0.00013 29.3 2.8 28 36-70 4-31 (40)
18 1wr3_A Ubiquitin-protein ligas 66.6 3.8 0.00013 28.4 2.6 26 38-70 3-28 (36)
19 2ysf_A E3 ubiquitin-protein li 66.3 3.9 0.00013 29.4 2.7 26 37-69 5-30 (40)
20 1e0m_A Wwprototype; SH3 protot 66.2 3.7 0.00013 28.4 2.5 27 38-71 2-28 (37)
21 2kyk_A E3 ubiquitin-protein li 64.8 4.1 0.00014 28.9 2.5 26 38-70 5-30 (39)
22 2law_A Yorkie homolog; YAP, SM 63.8 3.1 0.00011 29.5 1.7 26 38-70 5-30 (38)
23 1yw5_A Peptidyl prolyl CIS/tra 62.8 4.2 0.00014 36.7 2.8 41 38-84 6-52 (177)
24 1wr4_A Ubiquitin-protein ligas 61.6 5.5 0.00019 27.3 2.6 27 38-71 3-29 (36)
25 2ysb_A Salvador homolog 1 prot 60.8 4.4 0.00015 30.6 2.2 25 39-70 11-35 (49)
26 2ez5_W Dnedd4, E3 ubiquitin-pr 60.6 5.2 0.00018 29.7 2.5 27 37-70 8-34 (46)
27 1i5h_W Rnedd4, ubiquitin ligas 60.6 4.8 0.00016 30.4 2.4 28 36-70 8-35 (50)
28 2dmv_A Itchy homolog E3 ubiqui 60.4 6.7 0.00023 28.4 3.0 28 36-70 4-31 (43)
29 2jmf_A E3 ubiquitin-protein li 59.8 5.1 0.00017 30.8 2.4 27 37-70 16-42 (53)
30 2ysd_A Membrane-associated gua 59.5 5.5 0.00019 31.1 2.6 20 9-30 13-32 (57)
31 3rpj_A Curlin genes transcript 59.4 5.6 0.00019 36.4 3.0 35 2-39 49-83 (134)
32 2kpz_A E3 ubiquitin-protein li 59.0 5 0.00017 30.0 2.2 28 36-70 9-36 (49)
33 2djy_A SMAD ubiquitination reg 58.3 6.8 0.00023 28.6 2.8 25 38-69 6-30 (42)
34 1wr7_A NEDD4-2; all-beta, liga 58.2 7.1 0.00024 28.0 2.8 27 37-70 6-32 (41)
35 2l4j_A YES-associated protein 57.6 5.7 0.0002 29.5 2.3 27 37-70 9-35 (46)
36 2jv4_A Peptidyl-prolyl CIS/tra 57.4 7.4 0.00025 30.0 3.0 29 36-70 4-32 (54)
37 2ho2_A Fe65 protein, amyloid b 56.4 6.6 0.00022 28.5 2.4 25 38-70 2-26 (38)
38 2ysd_A Membrane-associated gua 55.0 6.2 0.00021 30.8 2.2 27 36-69 11-37 (57)
39 2dwv_A Salvador homolog 1 prot 54.5 6.4 0.00022 29.7 2.1 26 38-70 12-37 (49)
40 1wmv_A WWOX, WW domain contain 53.7 7 0.00024 30.1 2.3 26 37-69 9-34 (54)
41 1o6w_A PRP40, PRE-mRNA process 53.5 1.5 5.3E-05 34.5 -1.5 50 13-71 2-65 (75)
42 2ysc_A Amyloid beta A4 precurs 52.6 8.3 0.00028 28.0 2.4 26 37-70 6-31 (39)
43 2yse_A Membrane-associated gua 51.5 9.7 0.00033 30.2 2.8 28 36-70 10-37 (60)
44 2zaj_A Membrane-associated gua 50.9 9.2 0.00031 29.0 2.5 28 36-70 10-37 (49)
45 3l4h_A E3 ubiquitin-protein li 46.7 9.8 0.00033 33.6 2.4 26 37-69 70-95 (109)
46 2kxq_A E3 ubiquitin-protein li 40.5 15 0.00052 30.1 2.5 27 37-70 7-33 (90)
47 3l4h_A E3 ubiquitin-protein li 39.2 17 0.00057 32.1 2.7 20 9-30 71-90 (109)
48 2kpz_A E3 ubiquitin-protein li 38.7 17 0.00058 27.1 2.3 28 1-30 3-30 (49)
49 1tk7_A CG4244-PB; WW domain, n 36.6 14 0.00048 30.2 1.7 27 37-70 10-36 (88)
50 1jmq_A YAP65, 65 kDa YES-assoc 36.6 17 0.00059 26.4 2.0 25 38-69 7-31 (46)
51 1wr7_A NEDD4-2; all-beta, liga 35.6 33 0.0011 24.5 3.3 26 2-30 1-26 (41)
52 3tc5_A Peptidyl-prolyl CIS-tra 28.2 27 0.00091 31.6 2.2 27 38-70 8-34 (166)
53 2jxw_A WW domain-binding prote 22.8 72 0.0025 25.2 3.5 50 14-72 6-69 (75)
54 3tc5_A Peptidyl-prolyl CIS-tra 22.5 40 0.0014 30.5 2.3 32 9-42 8-40 (166)
55 3maz_A Signal-transducing adap 22.0 75 0.0025 28.3 3.8 45 42-91 61-105 (125)
56 2l5f_A PRE-mRNA-processing fac 20.0 55 0.0019 26.9 2.4 33 36-75 8-40 (92)
No 1
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=99.30 E-value=1.5e-12 Score=106.35 Aligned_cols=48 Identities=42% Similarity=0.749 Sum_probs=44.5
Q ss_pred CCCCCCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhh
Q 008463 36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET 84 (564)
Q Consensus 36 ~~egLP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeT 84 (564)
.+..||+||.+|+++|++|. ..+.|.||++| +|++|||+.+|.+||+.
T Consensus 9 ~~p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP-~Gkr~RS~~ev~~YL~~ 57 (72)
T 2ky8_A 9 DCPALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYLGN 57 (72)
T ss_dssp ECSSSCTTCEEEEEECCSSTTTTCEEEEEECT-TCCEEESHHHHHHHHTT
T ss_pred cCCCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCEeEcHHHHHHHHhc
Confidence 56699999999999999885 66899999999 99999999999999977
No 2
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=99.29 E-value=1.1e-12 Score=108.17 Aligned_cols=48 Identities=33% Similarity=0.589 Sum_probs=43.8
Q ss_pred CCCCCCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhh
Q 008463 36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET 84 (564)
Q Consensus 36 ~~egLP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeT 84 (564)
.+..||+||.+|+++|++|. +.+.|.||++| +|++|||+.+|.|||+.
T Consensus 7 ~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP-~Gkk~RS~~ev~ryL~~ 55 (75)
T 1d9n_A 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLGP 55 (75)
T ss_dssp ECTTTCSSCEEEECSSSSSCTTCCCCEEEECS-SSCEECSTHHHHHHHCT
T ss_pred cCCCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCeeecHHHHHHHhcc
Confidence 56789999999999999985 46899999999 99999999999999963
No 3
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=99.24 E-value=5.1e-12 Score=108.88 Aligned_cols=48 Identities=40% Similarity=0.743 Sum_probs=43.9
Q ss_pred CCCCCCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhh
Q 008463 36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET 84 (564)
Q Consensus 36 ~~egLP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeT 84 (564)
.+.+||+||.+|+++|++|. ..+.|.||++| +|++|||+.+|.+||+.
T Consensus 20 ~~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP-~GkkfRSk~ev~ryL~~ 68 (97)
T 3c2i_A 20 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIMYFEK 68 (97)
T ss_dssp CCTTSCTTCEEEEEECCSSTTTTCEEEEEECT-TSCEECSHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEEecCCCCCCcceEEEECC-CCCEEECHHHHHHHHHH
Confidence 56789999999999999986 55899999999 89999999999999963
No 4
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=99.19 E-value=1.4e-11 Score=100.04 Aligned_cols=49 Identities=29% Similarity=0.599 Sum_probs=42.8
Q ss_pred CCCCCCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhhC
Q 008463 36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETG 85 (564)
Q Consensus 36 ~~egLP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeTG 85 (564)
.+..||.||.+|+++|++|. ..+.|.||+.|. |++|||+.+|.+||+.-
T Consensus 2 ~~~plp~GW~R~~~~R~~G~s~gk~DvyY~sP~-Gkk~RSk~ev~~yL~~~ 51 (69)
T 3vxv_A 2 GHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQ-GLKFRSKRSLANYLLKN 51 (69)
T ss_dssp --CCSCTTCEEEEEECCSSTTTTCEEEEEECTT-SCEECSHHHHHHHHHHH
T ss_pred CCCcCCCCCEEEEEEeccCCCCCcceEEEEcCC-CCEeeCHHHHHHHHHhC
Confidence 36789999999999999885 568999999995 99999999999999763
No 5
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=99.07 E-value=7.6e-11 Score=106.53 Aligned_cols=62 Identities=34% Similarity=0.594 Sum_probs=50.3
Q ss_pred ccCCcceeeE-eee--cCCCCCCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhh
Q 008463 22 RKNGKKDKII-IEK--DTPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET 84 (564)
Q Consensus 22 ~knG~k~K~v-iEk--~~~egLP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeT 84 (564)
+..++..++| ++. ..+.+||.||.+|+++|++|. ..+.|.||+.| +|++|||+.+|.+||+.
T Consensus 17 ~~~~~rr~vi~~~~~~~~~~~LP~GWkRe~~~RksG~Sagk~DVYY~SP-~GKkfRSk~Ev~ryL~~ 82 (133)
T 1ub1_A 17 ASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFEK 82 (133)
T ss_dssp SCCCCCCCCCCTTSCSSCCCCBTTBCEEEEEECCCSSSCCSEEEEEECT-TSCEESSHHHHHHHHTT
T ss_pred cCccCccceeeccccccCCCCCCCCCEEEEEEecCCCCCCceeEEEECC-CCCeeeCHHHHHHHHHH
Confidence 3445555554 333 257789999999999999984 56999999999 69999999999999963
No 6
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=95.85 E-value=0.0066 Score=50.26 Aligned_cols=54 Identities=26% Similarity=0.449 Sum_probs=35.6
Q ss_pred CCCCCCCeEEEEEEccCCcceee-------Eeeec------------CCCCCCCCceEEEEEecCCCccccccceeCCCC
Q 008463 8 DELLPDGCRVEVRVRKNGKKDKI-------IIEKD------------TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPAS 68 (564)
Q Consensus 8 ~dWLPDGW~vEvr~~knG~k~K~-------viEk~------------~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvs 68 (564)
..=||+|| |+++..+|+.|-| .-+.. ....||.||.... -. ...+||+|..|
T Consensus 7 ~~~LP~gW--e~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~--~~-----~G~~Yy~n~~t 77 (90)
T 2kxq_A 7 PPDLPEGY--EQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRN--TA-----TGRVYFVDHNN 77 (90)
T ss_dssp CCSCCSSC--EEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEE--CT-----TSCEEEEETTT
T ss_pred CCCCCCCc--EEEECCCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEE--CC-----CCCEEEEECCC
Confidence 34599999 5666689998877 11111 1246999998765 22 23579999876
Q ss_pred Cc
Q 008463 69 GY 70 (564)
Q Consensus 69 Gy 70 (564)
+.
T Consensus 78 ~~ 79 (90)
T 2kxq_A 78 RT 79 (90)
T ss_dssp TE
T ss_pred Cc
Confidence 54
No 7
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=94.83 E-value=0.046 Score=45.05 Aligned_cols=56 Identities=21% Similarity=0.473 Sum_probs=36.6
Q ss_pred CCCCCCCCCeEEEEEEccCCcceee-------Eeeec----------CCCCCCCCceEEEEEecCCCccccccceeCCCC
Q 008463 6 NSDELLPDGCRVEVRVRKNGKKDKI-------IIEKD----------TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPAS 68 (564)
Q Consensus 6 ~s~dWLPDGW~vEvr~~knG~k~K~-------viEk~----------~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvs 68 (564)
....=||+||.+ ++..+|+.|-| .-+.. ....||.||..-. -.. ..+||+|..|
T Consensus 8 ~~~~~LP~gWe~--~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~--~~~-----G~~Yy~nh~t 78 (88)
T 1tk7_A 8 DALGPLPDGWEK--KIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRY--TAA-----GERFFVDHNT 78 (88)
T ss_dssp STTSSSSSSCCE--EEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEE--ETT-----TEEEEEETTT
T ss_pred CccCCCCCCcEE--EECCCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEE--CCC-----CCEEEEECCC
Confidence 344459999954 55678998877 11221 1346999998765 222 2479999877
Q ss_pred Cc
Q 008463 69 GY 70 (564)
Q Consensus 69 Gy 70 (564)
+.
T Consensus 79 ~~ 80 (88)
T 1tk7_A 79 RR 80 (88)
T ss_dssp TE
T ss_pred Cc
Confidence 64
No 8
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=89.40 E-value=0.27 Score=42.62 Aligned_cols=20 Identities=35% Similarity=0.717 Sum_probs=17.2
Q ss_pred CCCCCCCeEEEEEEccCCcc
Q 008463 8 DELLPDGCRVEVRVRKNGKK 27 (564)
Q Consensus 8 ~dWLPDGW~vEvr~~knG~k 27 (564)
+.|||+||..|+..|++|..
T Consensus 21 ~~~lP~GW~re~~~R~~G~s 40 (97)
T 3c2i_A 21 DPTLPEGWTRKLKQRKSGRS 40 (97)
T ss_dssp CTTSCTTCEEEEEECCSSTT
T ss_pred CCCCCCCCEEEEEEecCCCC
Confidence 45799999999999999743
No 9
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=88.15 E-value=0.26 Score=40.66 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=17.0
Q ss_pred CCCCCCCCeEEEEEEccCCc
Q 008463 7 SDELLPDGCRVEVRVRKNGK 26 (564)
Q Consensus 7 s~dWLPDGW~vEvr~~knG~ 26 (564)
-.-+||+||..|++.|++|.
T Consensus 7 ~~p~LP~GW~Re~~~R~~g~ 26 (75)
T 1d9n_A 7 DCPALGPGWKRREVFRKSGA 26 (75)
T ss_dssp ECTTTCSSCEEEECSSSSSC
T ss_pred cCCCCCCCCEEEEEEecCCC
Confidence 34589999999999999973
No 10
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=83.39 E-value=0.61 Score=38.06 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=15.7
Q ss_pred CCCCCeEEEEEEccCCc
Q 008463 10 LLPDGCRVEVRVRKNGK 26 (564)
Q Consensus 10 WLPDGW~vEvr~~knG~ 26 (564)
+||+||..|+..|++|.
T Consensus 12 ~Lp~GW~R~~~~R~~g~ 28 (72)
T 2ky8_A 12 ALPPGWKKEEVIRKSGL 28 (72)
T ss_dssp SSCTTCEEEEEECCSST
T ss_pred CCCCCCEEEEEEecCCC
Confidence 89999999999999874
No 11
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=81.75 E-value=1.5 Score=39.99 Aligned_cols=20 Identities=35% Similarity=0.717 Sum_probs=17.4
Q ss_pred CCCCCCCeEEEEEEccCCcc
Q 008463 8 DELLPDGCRVEVRVRKNGKK 27 (564)
Q Consensus 8 ~dWLPDGW~vEvr~~knG~k 27 (564)
+.|||+||..|+.+|++|..
T Consensus 35 ~~~LP~GWkRe~~~RksG~S 54 (133)
T 1ub1_A 35 DPTLPEGWTRKLKQRKSGRS 54 (133)
T ss_dssp CCCBTTBCEEEEEECCCSSS
T ss_pred CCCCCCCCEEEEEEecCCCC
Confidence 56899999999999999743
No 12
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=76.89 E-value=2.4 Score=35.10 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=40.7
Q ss_pred CCCCCCCeEEEEEEccCCcceeeEe-ee----cCCC---------CCCCCceEEEEEecCCCccccccceeCCCCCceec
Q 008463 8 DELLPDGCRVEVRVRKNGKKDKIII-EK----DTPD---------GLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFR 73 (564)
Q Consensus 8 ~dWLPDGW~vEvr~~knG~k~K~vi-Ek----~~~e---------gLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy~FR 73 (564)
..=||.||.. ++..+|+.|-|=. .+ ..|. -||.||..-. -.. .-+||+++.|+...-
T Consensus 9 ~~~lp~~W~e--~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~--~~~-----Gr~Yy~N~~T~~s~W 79 (92)
T 2l5f_A 9 ASGAKSMWTE--HKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYK--SDS-----GKTYYYNSQTKESRW 79 (92)
T ss_dssp TTBTTTTEEE--EECTTSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEE--CTT-----CCEEEEETTTTEEES
T ss_pred CCCCCCCcEE--EEcCCCCEEEEECCCCceecccCccccccccccccccceEEEE--CCC-----CCEEEEECCCCCeec
Confidence 4458999974 5566999987711 11 1222 2678998753 222 247999999988776
Q ss_pred chHHHHH
Q 008463 74 SMKDAVR 80 (564)
Q Consensus 74 SkkdV~R 80 (564)
.++..+.
T Consensus 80 e~P~~~~ 86 (92)
T 2l5f_A 80 AKPKELE 86 (92)
T ss_dssp CCCHHHH
T ss_pred cCchhHh
Confidence 6655544
No 13
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=76.43 E-value=1.4 Score=35.72 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=16.0
Q ss_pred CCCCCCeEEEEEEccCCc
Q 008463 9 ELLPDGCRVEVRVRKNGK 26 (564)
Q Consensus 9 dWLPDGW~vEvr~~knG~ 26 (564)
..||+||..|+.+|++|.
T Consensus 4 ~plp~GW~R~~~~R~~G~ 21 (69)
T 3vxv_A 4 KPVPCGWERVVKQRLSGK 21 (69)
T ss_dssp CCSCTTCEEEEEECCSST
T ss_pred CcCCCCCEEEEEEeccCC
Confidence 479999999999999874
No 14
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=68.28 E-value=4.2 Score=28.82 Aligned_cols=28 Identities=29% Similarity=0.787 Sum_probs=17.7
Q ss_pred CCCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 36 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 36 ~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
....||+||.... ... ...||++-.|+.
T Consensus 4 ~~~~LP~gW~~~~--d~~-----Gr~YY~n~~T~~ 31 (40)
T 2ysh_A 4 GSSGLPPGWQSYL--SPQ-----GRRYYVNTTTNE 31 (40)
T ss_dssp CCSSCCTTCEEEE--CTT-----SCEEEECSSSCC
T ss_pred CCCCCCCCceEEE--CCC-----CCEEEEECCCCC
Confidence 3457999995433 222 247888887764
No 15
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=68.12 E-value=3.3 Score=29.71 Aligned_cols=18 Identities=33% Similarity=0.246 Sum_probs=9.4
Q ss_pred CCCCCeEEEEEEccCCccee
Q 008463 10 LLPDGCRVEVRVRKNGKKDK 29 (564)
Q Consensus 10 WLPDGW~vEvr~~knG~k~K 29 (564)
=||+|| |++...+|+.|-
T Consensus 7 ~LP~gW--e~~~~~~Gr~Yy 24 (40)
T 2ysg_A 7 GLPYGW--EEAYTADGIKYF 24 (40)
T ss_dssp CCCTTE--EEEECSSSCEEE
T ss_pred CCCCCc--EEEEcCCCCEEE
Confidence 366666 334445555543
No 16
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=68.03 E-value=3.2 Score=29.95 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=17.2
Q ss_pred CCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 37 ~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
+..||+||.... ... ...||++-.|+.
T Consensus 6 ~~~LP~gW~~~~--~~~-----Gr~YY~n~~T~~ 32 (43)
T 1ymz_A 6 SMPLPPGWERRT--DVE-----GKVYYFNVRTLT 32 (43)
T ss_dssp -CCCCSSEEEEE--CTT-----SCEEEEETTTTE
T ss_pred CCCCCCCCEEEE--CCC-----CCEEEEECCCCC
Confidence 457999996654 222 357898887664
No 17
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=67.00 E-value=3.9 Score=29.34 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=18.0
Q ss_pred CCCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 36 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 36 ~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
....||+||.... ... ...||+|-.|+.
T Consensus 4 ~~~~LP~gWe~~~--~~~-----Gr~Yy~nh~t~~ 31 (40)
T 2ysg_A 4 GSSGLPYGWEEAY--TAD-----GIKYFINHVTQT 31 (40)
T ss_dssp SSSCCCTTEEEEE--CSS-----SCEEEEESSSCC
T ss_pred CcCCCCCCcEEEE--cCC-----CCEEEEECCCCc
Confidence 3457999995543 322 347999876653
No 18
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=66.62 E-value=3.8 Score=28.44 Aligned_cols=26 Identities=27% Similarity=0.744 Sum_probs=17.4
Q ss_pred CCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 38 egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
..||+||.... -. ....||++-.|+.
T Consensus 3 ~~LP~GWe~~~--d~-----~G~~Yy~n~~t~~ 28 (36)
T 1wr3_A 3 PPLPPGWEEKV--DN-----LGRTYYVNHNNRS 28 (36)
T ss_dssp SCSCTTEEEEE--CS-----SSCEEEEETTTCC
T ss_pred CCCCCCCEEEE--CC-----CCCEEEEECCCCC
Confidence 46899998765 12 2357898887664
No 19
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=66.33 E-value=3.9 Score=29.38 Aligned_cols=26 Identities=35% Similarity=0.778 Sum_probs=15.9
Q ss_pred CCCCCCCceEEEEEecCCCccccccceeCCCCC
Q 008463 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (564)
Q Consensus 37 ~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsG 69 (564)
...||+||.+.+ -. ....||+|-.|+
T Consensus 5 ~~~LP~gWe~~~--~~-----~G~~Yy~nh~t~ 30 (40)
T 2ysf_A 5 SSGLPEGWEMRF--TV-----DGIPYFVDHNRR 30 (40)
T ss_dssp CCCCCSSEEEEE--CT-----TCCEEEEETTTC
T ss_pred cCCCCcCcEEEE--cC-----CCCEEEEECCCC
Confidence 356888887665 12 224688876554
No 20
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=66.25 E-value=3.7 Score=28.41 Aligned_cols=27 Identities=33% Similarity=0.687 Sum_probs=17.5
Q ss_pred CCCCCCceEEEEEecCCCccccccceeCCCCCce
Q 008463 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 71 (564)
Q Consensus 38 egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy~ 71 (564)
..||+||.... -.. ...||++-.|+..
T Consensus 2 ~~LP~gW~~~~--~~~-----G~~Yy~n~~t~~t 28 (37)
T 1e0m_A 2 MGLPPGWDEYK--THN-----GKTYYYNHNTKTS 28 (37)
T ss_dssp CCSCTTEEEEE--CSS-----CCEEEEETTTTEE
T ss_pred CCCCCCcEEEE--CCC-----CCEEEEECCCCCe
Confidence 36899998654 222 2478888876643
No 21
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=64.84 E-value=4.1 Score=28.88 Aligned_cols=26 Identities=31% Similarity=0.755 Sum_probs=17.8
Q ss_pred CCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 38 egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
..||+||....- . ....||++-.|+.
T Consensus 5 ~~LP~gWe~~~d--~-----~G~~YY~n~~t~~ 30 (39)
T 2kyk_A 5 GPLPPGWERRVD--N-----MGRIYYVDHFTRT 30 (39)
T ss_dssp CCCCSSCEEEEC--T-----TSCEEEECSSSCC
T ss_pred CCCCCCcEEEEc--C-----CCCEEEEECCCCC
Confidence 469999987651 2 2357999887654
No 22
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=63.75 E-value=3.1 Score=29.54 Aligned_cols=26 Identities=27% Similarity=0.680 Sum_probs=17.8
Q ss_pred CCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 38 egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
..||+||....- .. ...||++-.|+.
T Consensus 5 ~~LP~gWe~~~~--~~-----G~~Yy~nh~t~~ 30 (38)
T 2law_A 5 GPLPDGWEQAMT--QD-----GEIYYINHKNKT 30 (38)
T ss_dssp CCCSSSCCEEEE--TT-----TEEEEEETTTTE
T ss_pred CCCCCCcEEEEC--CC-----CCEEEEECCCCC
Confidence 469999987762 22 347999887654
No 23
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=62.79 E-value=4.2 Score=36.72 Aligned_cols=41 Identities=20% Similarity=0.558 Sum_probs=28.4
Q ss_pred CCCCCCceEEEEEecCCCccccccceeCCCCCcee------cchHHHHHHHhh
Q 008463 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIF------RSMKDAVRYVET 84 (564)
Q Consensus 38 egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy~F------RSkkdV~RYLeT 84 (564)
.+||+||.+.+ =++ +...||+++++...= -|-.++..|++.
T Consensus 6 ~~lp~~w~~~~--s~s----~~~~Yy~~~~~~~~~~~~~~~vs~~ei~~yy~~ 52 (177)
T 1yw5_A 6 TGLPPNWTIRV--SRS----HNKEYFLNQSTNESSWDPPYGTDKEVLNAYIAK 52 (177)
T ss_dssp CCCCTTEEEEE--CSS----TTCEEEEETTTCCEESSCCTTCCHHHHHHHHHH
T ss_pred CCCCchHHHHh--ccc----CCchhhhhHHHhhHhhcCcccCCHHHHHHHHHH
Confidence 67999998766 222 346889998874332 367889988864
No 24
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=61.59 E-value=5.5 Score=27.29 Aligned_cols=27 Identities=30% Similarity=0.754 Sum_probs=17.6
Q ss_pred CCCCCCceEEEEEecCCCccccccceeCCCCCce
Q 008463 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 71 (564)
Q Consensus 38 egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy~ 71 (564)
..||.||..-. ...| ..||++-.|+..
T Consensus 3 ~~LP~gWe~~~--d~~g-----~~Yy~n~~t~~t 29 (36)
T 1wr4_A 3 PGLPSGWEERK--DAKG-----RTYYVNHNNRTT 29 (36)
T ss_dssp TTCCTTEEEEE--CSSS-----CEEEEETTTTEE
T ss_pred CCCCCCCEEEE--CCCC-----CEEEEECCCCCE
Confidence 46899998755 2222 458988877643
No 25
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=60.84 E-value=4.4 Score=30.60 Aligned_cols=25 Identities=40% Similarity=0.846 Sum_probs=16.4
Q ss_pred CCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 39 GLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 39 gLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
.||+||...+- . ....||+|-.+..
T Consensus 11 ~LP~gWe~~~~--~-----~Gr~Yy~nh~t~~ 35 (49)
T 2ysb_A 11 PLPPGWSVDWT--M-----RGRKYYIDHNTNT 35 (49)
T ss_dssp CCCTTEEEEEC--S-----SSCEEEEETTTTE
T ss_pred CCCCCceEEEC--C-----CCCEEEEEcCCCC
Confidence 59999987652 2 2357888876543
No 26
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=60.60 E-value=5.2 Score=29.68 Aligned_cols=27 Identities=30% Similarity=0.701 Sum_probs=16.9
Q ss_pred CCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 37 ~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
...||+||...+ -.. ...||+|-.|+.
T Consensus 8 ~~~LP~gWe~~~--~~~-----Gr~Yyinh~t~~ 34 (46)
T 2ez5_W 8 EEPLPPRWSMQV--APN-----GRTFFIDHASRR 34 (46)
T ss_dssp SCCCCTTEEEEE--CTT-----SSEEEEETTTTE
T ss_pred CCCCCcCcEEEE--cCC-----CCEEEEECCCCC
Confidence 346899997765 222 246888776543
No 27
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=60.59 E-value=4.8 Score=30.41 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=17.1
Q ss_pred CCCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 36 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 36 ~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
....||+||...+ -.. ...||++-.|+.
T Consensus 8 ~~~~LP~gWe~~~--~~~-----Gr~Yy~nh~t~~ 35 (50)
T 1i5h_W 8 DLGPLPPGWEERT--HTD-----GRVFFINHNIKK 35 (50)
T ss_dssp CCSSCSTTEEEEE--CTT-----SCEEEEETTTTE
T ss_pred cCCCCCcCcEEEE--cCC-----CCEEEEECCCCC
Confidence 4456888887654 222 246888776543
No 28
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.42 E-value=6.7 Score=28.43 Aligned_cols=28 Identities=32% Similarity=0.839 Sum_probs=17.4
Q ss_pred CCCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 36 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 36 ~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
....||+||..-.- . ....||++-.|+.
T Consensus 4 ~~~~LP~GWe~~~d--~-----~Gr~YY~n~~t~~ 31 (43)
T 2dmv_A 4 GSSGLPPGWEQRVD--Q-----HGRVYYVDHVEKR 31 (43)
T ss_dssp SCCSCCTTEEEEEC--T-----TSCEEEEETTTCC
T ss_pred CCCCCCCCceEEEC--C-----CCCEEEEECCCCC
Confidence 34568888876551 1 2346888876654
No 29
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=59.80 E-value=5.1 Score=30.79 Aligned_cols=27 Identities=26% Similarity=0.671 Sum_probs=17.4
Q ss_pred CCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 37 ~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
...||+||.+.+ -.. ...||+|-.|..
T Consensus 16 ~~~LP~GWe~~~--~~~-----Gr~Yyinh~tk~ 42 (53)
T 2jmf_A 16 EGPLPPGWEIRY--TAA-----GERFFVDHNTRR 42 (53)
T ss_dssp CSCCCTTEEEEE--CTT-----SCEEEEETTTCC
T ss_pred CCCCCcCcEEEE--cCC-----CCEEEEeCCCCc
Confidence 346999998765 222 346888876543
No 30
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=59.53 E-value=5.5 Score=31.06 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=10.1
Q ss_pred CCCCCCeEEEEEEccCCcceee
Q 008463 9 ELLPDGCRVEVRVRKNGKKDKI 30 (564)
Q Consensus 9 dWLPDGW~vEvr~~knG~k~K~ 30 (564)
.=||+||.+. +..+|+.|-|
T Consensus 13 ~~LP~GWe~~--~~~~Gr~Yyi 32 (57)
T 2ysd_A 13 GPLPENWEMA--YTENGEVYFI 32 (57)
T ss_dssp CSCCSSEEEE--ECSSCCEEEE
T ss_pred CCCCcCcEEE--ECCCCCEEEE
Confidence 3466666544 2345555544
No 31
>3rpj_A Curlin genes transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.90A {Proteus mirabilis}
Probab=59.44 E-value=5.6 Score=36.43 Aligned_cols=35 Identities=11% Similarity=-0.009 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCCCeEEEEEEccCCcceeeEeeecCCCC
Q 008463 2 GDRENSDELLPDGCRVEVRVRKNGKKDKIIIEKDTPDG 39 (564)
Q Consensus 2 ~~~e~s~dWLPDGW~vEvr~~knG~k~K~viEk~~~eg 39 (564)
..||++..| |||+|.....+|=.|+|.+-.++..|
T Consensus 49 ~aPEkREFW---GWWleL~~~e~~F~y~Y~~Glydk~G 83 (134)
T 3rpj_A 49 VTPEKREFW---GWWMELERNGEQLIYYYQVGLFDKNG 83 (134)
T ss_dssp SCSSSCCEE---EEEEEEEEETTEEEEEEEEEEECTTS
T ss_pred CChhhhhhh---hhheeeeecCCcEEEEEecccccCCC
Confidence 368999999 99999999999999999888876554
No 32
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=59.04 E-value=5 Score=30.00 Aligned_cols=28 Identities=25% Similarity=0.544 Sum_probs=16.7
Q ss_pred CCCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 36 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 36 ~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
....||+||.... -.. ...||+|-.|+.
T Consensus 9 ~~~~LP~gWe~~~--~~~-----G~~Yy~nh~T~~ 36 (49)
T 2kpz_A 9 EQGFLPKGWEVRH--APN-----GRPFFIDHNTKT 36 (49)
T ss_dssp ---CCCTTEEEEE--CTT-----SCEEEEETTTTE
T ss_pred cCCCCCCCcEEEE--CCC-----CCEEEEECCCCC
Confidence 3456999998765 222 346888876654
No 33
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=58.31 E-value=6.8 Score=28.61 Aligned_cols=25 Identities=36% Similarity=0.728 Sum_probs=15.7
Q ss_pred CCCCCCceEEEEEecCCCccccccceeCCCCC
Q 008463 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (564)
Q Consensus 38 egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsG 69 (564)
..||+||.+.+ -.. ...||+|-.|+
T Consensus 6 ~~LP~GWe~~~--~~~-----G~~Yy~nh~t~ 30 (42)
T 2djy_A 6 GPLPPGWEIRN--TAT-----GRVYFVDHNNR 30 (42)
T ss_dssp SCCCSSEEEEE--CSS-----SCEEEEETTTT
T ss_pred CCCCcCcEEEE--CCC-----CCEEEEECCCC
Confidence 45888887765 222 24688877654
No 34
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=58.20 E-value=7.1 Score=28.05 Aligned_cols=27 Identities=33% Similarity=0.751 Sum_probs=16.4
Q ss_pred CCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 37 ~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
...||+||...+ -.. ...||++-.|+.
T Consensus 6 ~~~LP~gWe~~~--~~~-----G~~Yy~n~~t~~ 32 (41)
T 1wr7_A 6 QSFLPPGWEMRI--APN-----GRPFFIDHNTKT 32 (41)
T ss_dssp CCSSCTTEEEEE--CTT-----SCEEEEETTTTE
T ss_pred cCCCCCCcEEEE--cCC-----CCEEEEECCCCC
Confidence 346888887664 222 246888776654
No 35
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=57.61 E-value=5.7 Score=29.52 Aligned_cols=27 Identities=33% Similarity=0.683 Sum_probs=17.3
Q ss_pred CCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 37 ~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
...||+||...+ -.. ...||+|-.|+.
T Consensus 9 ~~~LP~gWe~~~--~~~-----G~~Yyinh~t~~ 35 (46)
T 2l4j_A 9 SGPLPEGWEQAI--TPE-----GEIYYINHKNKT 35 (46)
T ss_dssp TSCCCTTCEEEE--CTT-----SCEEEEETTTTE
T ss_pred CCCCCcCceeEE--CCC-----CCEEEEECCCCC
Confidence 346999998765 222 346888876553
No 36
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=57.36 E-value=7.4 Score=29.98 Aligned_cols=29 Identities=34% Similarity=0.833 Sum_probs=18.4
Q ss_pred CCCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 36 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 36 ~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
.-..||+||..- .+.. ....||++..|+.
T Consensus 4 ~~~~LP~GW~~~----~~~~--~Gr~YY~N~~T~~ 32 (54)
T 2jv4_A 4 VNTGLPAGWEVR----HSNS--KNLPYYFNPATRE 32 (54)
T ss_dssp CCCCCCSSCCEE----ECSS--SSCEEEEETTTTE
T ss_pred CCCCCCCCcEEE----EECC--CCCEEEEECCCCc
Confidence 345799999842 2221 1247999887765
No 37
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=56.36 E-value=6.6 Score=28.49 Aligned_cols=25 Identities=28% Similarity=0.656 Sum_probs=16.0
Q ss_pred CCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 38 egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
..||+||.+..- . .. .||++-.|+.
T Consensus 2 ~~LP~GWe~~~d--~-----~g-~YY~n~~t~~ 26 (38)
T 2ho2_A 2 SDLPAGWMRVQD--T-----SG-TYYWHIPTGT 26 (38)
T ss_dssp CCSCTTEEEEEC--S-----SC-EEEEETTTTE
T ss_pred CcCCCCceEEEe--C-----CC-CEEEecCCCC
Confidence 359999987651 1 23 7888876553
No 38
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=54.96 E-value=6.2 Score=30.76 Aligned_cols=27 Identities=26% Similarity=0.553 Sum_probs=18.0
Q ss_pred CCCCCCCCceEEEEEecCCCccccccceeCCCCC
Q 008463 36 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (564)
Q Consensus 36 ~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsG 69 (564)
....||+||.+.+ -. ....||+|-.|+
T Consensus 11 ~~~~LP~GWe~~~--~~-----~Gr~Yyinh~tk 37 (57)
T 2ysd_A 11 NLGPLPENWEMAY--TE-----NGEVYFIDHNTK 37 (57)
T ss_dssp CCCSCCSSEEEEE--CS-----SCCEEEEETTTT
T ss_pred CCCCCCcCcEEEE--CC-----CCCEEEEECCCC
Confidence 3456999998776 22 235788887554
No 39
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=54.47 E-value=6.4 Score=29.74 Aligned_cols=26 Identities=35% Similarity=0.811 Sum_probs=17.4
Q ss_pred CCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 38 egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
..||+||.+..- ..| ..||+|-.|+.
T Consensus 12 ~~LP~GWe~~~d--~~g-----~~YYvnh~t~~ 37 (49)
T 2dwv_A 12 EGLPPGWERVES--SEF-----GTYYVDHTNKR 37 (49)
T ss_dssp SCCCTTEEEEEE--TTT-----EEEEEETTTTE
T ss_pred CCCCcCcEEEEC--CCC-----CEEEEECCCCC
Confidence 579999977652 222 36899887654
No 40
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=53.65 E-value=7 Score=30.06 Aligned_cols=26 Identities=23% Similarity=0.647 Sum_probs=16.2
Q ss_pred CCCCCCCceEEEEEecCCCccccccceeCCCCC
Q 008463 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (564)
Q Consensus 37 ~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsG 69 (564)
...||.||.+.+- .. ...||+|-.|.
T Consensus 9 ~~~LP~GWe~~~~--~~-----G~~Yyinh~tk 34 (54)
T 1wmv_A 9 AGDLPYGWEQETD--EN-----GQVFFVDHINK 34 (54)
T ss_dssp SSCSCTTEEEEEC--TT-----SCEEEEESSSC
T ss_pred CCCCCcCcEEEEC--CC-----CCEEEEeCCCC
Confidence 3469999987652 22 24688877543
No 41
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=53.48 E-value=1.5 Score=34.46 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=29.9
Q ss_pred CCeEEEEEEccCCcceeeE-------eeec-------CCCCCCCCceEEEEEecCCCccccccceeCCCCCce
Q 008463 13 DGCRVEVRVRKNGKKDKII-------IEKD-------TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI 71 (564)
Q Consensus 13 DGW~vEvr~~knG~k~K~v-------iEk~-------~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy~ 71 (564)
.|| +++++.+|+.|-|- -++. ....||.||..-. ...| -.||++..|+..
T Consensus 2 ~~W--~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~~~~lp~gW~~~~--~~~G-----r~Yy~n~~t~~t 65 (75)
T 1o6w_A 2 SIW--KEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAK--TADG-----KVYYYNPTTRET 65 (75)
T ss_dssp CCE--EEEECTTCCEEEEETTTTEEESSCCHHHHHHHHHHHHHHTCEEEE--CTTC-----CEEEEETTTTEE
T ss_pred CCC--eEEECCCCCeEEEECCCCCEEeecchhhcccccccCCCCeEEEEE--CCCC-----CEEEEECCCCCE
Confidence 367 45667799998661 1111 0124789995543 3332 379999987754
No 42
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=52.64 E-value=8.3 Score=28.03 Aligned_cols=26 Identities=46% Similarity=0.919 Sum_probs=16.8
Q ss_pred CCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 37 ~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
...||+||.+.. -..| +||++-.|+.
T Consensus 6 ~~~LP~GWe~~~--~~~G------~YY~n~~t~~ 31 (39)
T 2ysc_A 6 SGGLPPGWRKIH--DAAG------TYYWHVPSGS 31 (39)
T ss_dssp CCCCCTTEEEEE--ETTE------EEEEESSSCC
T ss_pred CCCCCCCcEEEE--cCCC------CEEEEcCCCC
Confidence 457999997654 2222 3888877664
No 43
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.46 E-value=9.7 Score=30.16 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=17.8
Q ss_pred CCCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 36 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 36 ~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
....||+||-+.. -.. ...||+|-.|..
T Consensus 10 ~~~~LP~GWE~~~--d~~-----Gr~YYvnh~tk~ 37 (60)
T 2yse_A 10 SELELPAGWEKIE--DPV-----YGIYYVDHINRK 37 (60)
T ss_dssp CCSSCCSSEEEEE--CSS-----SCEEEEETTTTE
T ss_pred CCCCCCCCcEEEE--CCC-----CCEEEEeCCCCC
Confidence 4457999997654 122 246898886553
No 44
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=50.87 E-value=9.2 Score=28.99 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=17.1
Q ss_pred CCCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 36 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 36 ~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
....||+||.+..- ..| -.||+|-.|+.
T Consensus 10 ~~~~LP~GWe~~~d--~~G-----r~YYvnh~t~~ 37 (49)
T 2zaj_A 10 SELELPAGWEKIED--PVY-----GIYYVDHINRK 37 (49)
T ss_dssp CSSCCCTTEEEEEE--TTT-----EEEEEETTTTE
T ss_pred CCCCCCcCceEEEc--CCC-----CEEEEeCCCCC
Confidence 44568888876542 222 25888876653
No 45
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=46.67 E-value=9.8 Score=33.55 Aligned_cols=26 Identities=38% Similarity=0.813 Sum_probs=15.8
Q ss_pred CCCCCCCceEEEEEecCCCccccccceeCCCCC
Q 008463 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (564)
Q Consensus 37 ~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsG 69 (564)
...||+|| |.++-..| ..||+|-.|.
T Consensus 70 ~~pLP~GW--E~r~d~~G-----r~YfIdH~tk 95 (109)
T 3l4h_A 70 RLELPRGW--EIKTDQQG-----KSFFVDHNSR 95 (109)
T ss_dssp TSCCCTTE--EEEECTTC-----CEEEEETTTT
T ss_pred CCCCCCCC--eEEECCCC-----CEEEEeCCCC
Confidence 34699999 44334333 4688877543
No 46
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=40.47 E-value=15 Score=30.12 Aligned_cols=27 Identities=30% Similarity=0.774 Sum_probs=17.3
Q ss_pred CCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 37 ~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
...||+||...+ ...| ..||++..|+.
T Consensus 7 ~~~LP~gWe~~~--~~~G-----r~YY~n~~t~~ 33 (90)
T 2kxq_A 7 PPDLPEGYEQRT--TQQG-----QVYFLHTQTGV 33 (90)
T ss_dssp CCSCCSSCEEEE--ETTT-----EEEEEETTTTE
T ss_pred CCCCCCCcEEEE--CCCC-----CEEEEECCCCe
Confidence 457999995444 3322 36999886553
No 47
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=39.18 E-value=17 Score=32.08 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=16.6
Q ss_pred CCCCCCeEEEEEEccCCcceee
Q 008463 9 ELLPDGCRVEVRVRKNGKKDKI 30 (564)
Q Consensus 9 dWLPDGW~vEvr~~knG~k~K~ 30 (564)
.-||+|| |.++..+|+.|-+
T Consensus 71 ~pLP~GW--E~r~d~~Gr~YfI 90 (109)
T 3l4h_A 71 LELPRGW--EIKTDQQGKSFFV 90 (109)
T ss_dssp SCCCTTE--EEEECTTCCEEEE
T ss_pred CCCCCCC--eEEECCCCCEEEE
Confidence 4599999 8888999998755
No 48
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=38.74 E-value=17 Score=27.09 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCCeEEEEEEccCCcceee
Q 008463 1 MGDRENSDELLPDGCRVEVRVRKNGKKDKI 30 (564)
Q Consensus 1 m~~~e~s~dWLPDGW~vEvr~~knG~k~K~ 30 (564)
|+..+-...=||+||.+. +..+|+.|-|
T Consensus 3 m~~~~~~~~~LP~gWe~~--~~~~G~~Yy~ 30 (49)
T 2kpz_A 3 MGPSEIEQGFLPKGWEVR--HAPNGRPFFI 30 (49)
T ss_dssp ---------CCCTTEEEE--ECTTSCEEEE
T ss_pred CccccccCCCCCCCcEEE--ECCCCCEEEE
Confidence 555545566799999765 4578988755
No 49
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=36.61 E-value=14 Score=30.20 Aligned_cols=27 Identities=26% Similarity=0.609 Sum_probs=17.7
Q ss_pred CCCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 37 ~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
...||+||.+.+ -..| ..||++-.|+.
T Consensus 10 ~~~LP~gWe~~~--~~~G-----r~Yy~n~~t~~ 36 (88)
T 1tk7_A 10 LGPLPDGWEKKI--QSDN-----RVYFVNHKNRT 36 (88)
T ss_dssp TSSSSSSCCEEE--ETTT-----EEEEEETTTTE
T ss_pred cCCCCCCcEEEE--CCCC-----CEEEEECCCCC
Confidence 346999996654 2222 37898876654
No 50
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=36.57 E-value=17 Score=26.37 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=14.4
Q ss_pred CCCCCCceEEEEEecCCCccccccceeCCCCC
Q 008463 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG 69 (564)
Q Consensus 38 egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsG 69 (564)
..||+||.... -.. ...||+|-++.
T Consensus 7 ~~LP~GWe~~~--~~~-----gr~y~~n~~t~ 31 (46)
T 1jmq_A 7 VPLPAGWEMAK--TSS-----GQRYFKNHIDQ 31 (46)
T ss_dssp CCCCTTBCCBC--CSS-----CCCBEEETTTT
T ss_pred CCCCcCcEEEE--cCC-----CceEEEEecCC
Confidence 46899996543 111 23577766544
No 51
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=35.58 E-value=33 Score=24.51 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCCeEEEEEEccCCcceee
Q 008463 2 GDRENSDELLPDGCRVEVRVRKNGKKDKI 30 (564)
Q Consensus 2 ~~~e~s~dWLPDGW~vEvr~~knG~k~K~ 30 (564)
|.| ..+.=||+||.+- +..+|+.|-|
T Consensus 1 ~~p-~~~~~LP~gWe~~--~~~~G~~Yy~ 26 (41)
T 1wr7_A 1 GSP-GIQSFLPPGWEMR--IAPNGRPFFI 26 (41)
T ss_dssp CTT-CCCCSSCTTEEEE--ECTTSCEEEE
T ss_pred CCC-CccCCCCCCcEEE--EcCCCCEEEE
Confidence 345 4566799999765 4468988755
No 52
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=28.22 E-value=27 Score=31.62 Aligned_cols=27 Identities=30% Similarity=0.703 Sum_probs=14.2
Q ss_pred CCCCCCceEEEEEecCCCccccccceeCCCCCc
Q 008463 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY 70 (564)
Q Consensus 38 egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy 70 (564)
..||+||..- .+-. ....||++..|+.
T Consensus 8 ~~LP~gWe~~----~~~~--~g~~yy~n~~t~~ 34 (166)
T 3tc5_A 8 EKLPPGWEKA----MSRS--SGRVYYFNHITNA 34 (166)
T ss_dssp --CCTTEEEE----ECTT--TCCEEEEETTTCC
T ss_pred CCCCCCceEE----EcCC--CCCEEEEECCCCC
Confidence 4689999532 2211 1246888766554
No 53
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=22.79 E-value=72 Score=25.17 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=29.1
Q ss_pred CeEEEEEEccCCcceee-------Eeeec-------CCCCCCCCceEEEEEecCCCccccccceeCCCCCcee
Q 008463 14 GCRVEVRVRKNGKKDKI-------IIEKD-------TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIF 72 (564)
Q Consensus 14 GW~vEvr~~knG~k~K~-------viEk~-------~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy~F 72 (564)
||. | +...+|+.|-| .-++. ....||.||..-. -..| -+||++..|+...
T Consensus 6 ~W~-e-~~~~~G~~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~--~~~G-----r~YyyN~~T~~s~ 69 (75)
T 2jxw_A 6 RWV-E-GITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGL--SEDG-----FTYYYNTETGESR 69 (75)
T ss_dssp CEE-E-EEETTTEEEEEETTTTEEECSCCSSCSSCCSSSSCCCSEEEEE--ETTT-----EEEEEETTTTEEE
T ss_pred CcE-E-EECCCCCEEEEECCCCCEeecCCCcccccccccCCCccEEEEE--CCCC-----CEEEEECcCCCEe
Confidence 554 3 34457999877 12221 1125789996654 2222 3699999887643
No 54
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=22.55 E-value=40 Score=30.45 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=20.0
Q ss_pred CCCCCCeEEEEEEc-cCCcceeeEeeecCCCCCCC
Q 008463 9 ELLPDGCRVEVRVR-KNGKKDKIIIEKDTPDGLPP 42 (564)
Q Consensus 9 dWLPDGW~vEvr~~-knG~k~K~viEk~~~egLP~ 42 (564)
.=||+|| |++.. ..|+.|-+-....+..|-++
T Consensus 8 ~~LP~gW--e~~~~~~~g~~yy~n~~t~~t~We~P 40 (166)
T 3tc5_A 8 EKLPPGW--EKAMSRSSGRVYYFNHITNASQWERP 40 (166)
T ss_dssp --CCTTE--EEEECTTTCCEEEEETTTCCEESSCC
T ss_pred CCCCCCc--eEEEcCCCCCEEEEECCCCCEEecCC
Confidence 3499999 56676 57888776444444555444
No 55
>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}
Probab=22.00 E-value=75 Score=28.31 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=33.9
Q ss_pred CCceEEEEEecCCCccccccceeCCCCCceecchHHHHHHHhhCCcccee
Q 008463 42 PGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLA 91 (564)
Q Consensus 42 ~GWvkE~r~RKsG~~ir~DkYYiDPvsGy~FRSkkdV~RYLeTG~I~r~a 91 (564)
.+=||-.|||+.+. .||+++.....|-|+.++..|-.+---+.|.
T Consensus 61 ~~~VKHYkI~~~~G-----~y~I~~~~~~~F~SL~eLV~yY~~~adGl~~ 105 (125)
T 3maz_A 61 IPRIKHYKVMSVGQ-----NYTIELEKPVTLPNLFSVIDYFVKETRGNLR 105 (125)
T ss_dssp SCEEEEEEEEEETT-----EEEECSSSCEEESSHHHHHHHHHHHTTTCCC
T ss_pred CCCEeeeEEEEeCC-----EEEEecCCCcCcCCHHHHHHHHHhCCCcCcc
Confidence 45688888887632 5999988788999999998887654444443
No 56
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=20.04 E-value=55 Score=26.93 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=21.9
Q ss_pred CCCCCCCCceEEEEEecCCCccccccceeCCCCCceecch
Q 008463 36 TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSM 75 (564)
Q Consensus 36 ~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy~FRSk 75 (564)
+...||.||..-. -..| -.||++..|+..---+
T Consensus 8 ~~~~lp~~W~e~~--~~~G-----r~YYyN~~T~~s~We~ 40 (92)
T 2l5f_A 8 TASGAKSMWTEHK--SPDG-----RTYYYNTETKQSTWEK 40 (92)
T ss_dssp STTBTTTTEEEEE--CTTS-----CEEEEETTTTEEESSC
T ss_pred cCCCCCCCcEEEE--cCCC-----CEEEEECCCCceeccc
Confidence 4567999998655 2222 4699999877654333
Done!