BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008464
(564 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CC1|A Chain A, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
pdb|3CC1|B Chain B, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
Length = 433
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 129/363 (35%), Positives = 186/363 (51%), Gaps = 26/363 (7%)
Query: 31 VRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYV 90
+ A +PP GWNS+D + +++EEE L +AE + L+ +G+EY+VVD WY +
Sbjct: 7 LSALTPPXGWNSWDCYGASVTEEEVLGNAEYXANHLKKYGWEYIVVDIQWYEPTANSSAY 66
Query: 91 DSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNAD 150
+ DE+GR++P +R+PS++ G GF ++ +H +GLKFGIH+ RGI QA +
Sbjct: 67 NPFAPLCXDEYGRLLPATNRFPSAKNGAGFKPLSDAIHDLGLKFGIHIXRGIPRQAVYEN 126
Query: 151 TPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA 210
+P+L + K A++I C W + TK GA +++ SL++ YA
Sbjct: 127 SPVLGSTK-----------TAREIAHTNSICPWNTDXYGVDPTKEGA-QSYYNSLFELYA 174
Query: 211 EWGVDFVKHDCVFGD---DLDINEISFVSEVLKELDRPIVYSLSPGTGVTPAMAKEVSGL 267
+WGVDFVK D + D + EI + ++ RP V SLSPG A
Sbjct: 175 QWGVDFVKVDDIAASRLYDTHLEEIKXIQRAIQACGRPXVLSLSPGPAPI-KYAHHFKTN 233
Query: 268 VNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSN 327
N +RIT D WD W + F + K + WPD LPLG + S
Sbjct: 234 ANXWRITDDFWDDWSLLYQXFERCE-------VWEKHIGTGHWPDCGXLPLGHI-GIRSV 285
Query: 328 EGP--HRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSS 385
+GP R DEQ T LWA+ SPL FGG++R DE T SL+TN +L IN S
Sbjct: 286 DGPGGDRWTRFTKDEQLTXXNLWAICHSPLXFGGELRDNDEWTLSLLTNEGILSINQKSV 345
Query: 386 NNK 388
N+
Sbjct: 346 LNR 348
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 144/351 (41%), Gaps = 92/351 (26%)
Query: 35 SPPRGWNSYDSFCWTISEEEFLQSAE-IISQRLRPHGYEYVVVDYLW--YRRKVKGAYVD 91
+P GWNS++ F I+E+ ++A+ +++ L GY+YV +D W Y R
Sbjct: 8 TPQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSR-------- 59
Query: 92 SLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADT 151
D G +P+ +PS G +A VHA GLK GI
Sbjct: 60 -------DSQGNFVPNRQTFPS-----GIKALADYVHAKGLKLGI--------------- 92
Query: 152 PILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAE 211
Y D+G Q + + K+ + +A
Sbjct: 93 ----------YSDAGSQ---------------------TCSNKMPGSLDHEEQDVKTFAS 121
Query: 212 WGVDFVKHD-CVFGDDLDINEISFVSEVLKELDRPIVYSLSPGTGVTPAMAKEVSGLVNM 270
WGVD++K+D C + + +S +K + I +SL PA G N
Sbjct: 122 WGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMG--NS 179
Query: 271 YRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGP 330
+R TGD D WG + + + + ++A G W D DML +G + G +E
Sbjct: 180 WRTTGDIADNWGSMTSRADENDQWAAYAGPGG-------WNDPDMLEVG---NGGMSEA- 228
Query: 331 HRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEIN 381
E R+ ++WA+AK+PL+ G DVR + + T ++++N V+ +N
Sbjct: 229 ---------EYRSHFSIWALAKAPLLIGCDVRSMSQQTKNILSNSEVIAVN 270
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 151/374 (40%), Gaps = 102/374 (27%)
Query: 33 ASSPPRGWNSYDSFCWTISEEEFLQSAEII-SQRLRPHGYEYVVVDYLWYRRKVKGAYVD 91
A +P GWN+++ + + E+ L +A+ I S L+ GY YV++D W + + + +
Sbjct: 6 AITPQMGWNTWNKYGCNVDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERESSKT- 64
Query: 92 SLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADT 151
++ DP ++P +G + +H +GLK GI+ G
Sbjct: 65 ------------LLADPTKFP-----RGIKPLVDDIHNLGLKAGIYSSAG---------- 97
Query: 152 PILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAE 211
TL G + S G+ ++ K +A+
Sbjct: 98 ----TLTCGGHIAS--------------------LGYEDIDAK-------------TWAK 120
Query: 212 WGVDFVKHDCVFGD------DLDINEISFVSEVLKELDRPIVYSLSPGTGVTPAMAKEVS 265
WG+D++K+D + L + + L + RP++YSL P S
Sbjct: 121 WGIDYLKYDNCYNQGQSGTPKLSYDRYKAMGNALNKTGRPMLYSLCNWGEDGPW--NFAS 178
Query: 266 GLVNMYRITGDDWD------------TWGDVAAHF--NVSRDFSAANMIGAKGLQGKSWP 311
+ N +RI+GD +D T+ V A F +V + A + K G W
Sbjct: 179 TISNSWRISGDVYDNFNRPDPACPCTTYDCVLAGFRCSVMNIINKAVAVSQKARSG-GWN 237
Query: 312 DLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSL 371
DLDML +G N G +N +E R T+WA KSPL+ G DV + TT +
Sbjct: 238 DLDMLEVG-------NGG------MNQEEYRVHYTIWAALKSPLILGNDVTNITNTTKEI 284
Query: 372 ITNPTVLEINTFSS 385
I N V+ +N SS
Sbjct: 285 IMNKEVIAVNQDSS 298
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 147/365 (40%), Gaps = 96/365 (26%)
Query: 33 ASSPPRGWNSYDSF-----C-----WTISEEEFLQSAEIISQR-LRPHGYEYVVVDYLWY 81
A +PP GW +++ F C ISE F++ A+ I++ R GY+Y+ +D W
Sbjct: 6 ARTPPMGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWRELGYKYINIDDCWA 65
Query: 82 RRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRG 141
++ D GR++PDP+R+P +G +A VHA GLK GI
Sbjct: 66 AKQR-------------DAEGRLVPDPERFP-----RGIKALADYVHARGLKLGI----- 102
Query: 142 ISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAF 201
Y D GR ++ G
Sbjct: 103 --------------------YGDLGR---------------------LTCGGYPGTTLDR 121
Query: 202 LRSLYQQYAEWGVDFVKHD-CVFGDDLDINEISFVSEVLKELDRPIVYSLS-PGT--GVT 257
+ Q +AEWGVD +K D C ++ L RPIVYS S P G+
Sbjct: 122 VEQDAQTFAEWGVDMLKLDGCYSSGKEQAQGYPQMARALNATGRPIVYSCSWPAYQGGLP 181
Query: 258 PAMAKEVSG-LVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDML 316
P + + G + N++R D D+W V + V F+ +++ G W D DML
Sbjct: 182 PKVNYTLLGEICNLWRNYDDIQDSWDSVLSI--VDWFFTNQDVLQPFAGPGH-WNDPDML 238
Query: 317 PLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPT 376
+G L+ ++ R+QM LW + +PL+ D+R + + ++ N
Sbjct: 239 IIG-------------NFGLSYEQSRSQMALWTIMAAPLLMSTDLRTISPSAKKILQNRL 285
Query: 377 VLEIN 381
+++IN
Sbjct: 286 MIQIN 290
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 144/365 (39%), Gaps = 97/365 (26%)
Query: 33 ASSPPRGWNSYDSFCWT----------ISEEEFLQSAEI-ISQRLRPHGYEYVVVDYLWY 81
A +P GW ++ F ISE+ F++ AE+ +S+ + GYEY+ +D W
Sbjct: 6 ARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWM 65
Query: 82 RRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRG 141
+ D GR+ DP R+P G ++A VH+ GLK GI+
Sbjct: 66 APQR-------------DSEGRLQADPQRFP-----HGIRQLANYVHSKGLKLGIYA--- 104
Query: 142 ISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAF 201
D+G K A G+ ++
Sbjct: 105 -------------------------------DVGNKTCAGFPGSFGYYDIDA-------- 125
Query: 202 LRSLYQQYAEWGVDFVKHDCVFGDDLD--INEISFVSEVLKELDRPIVYSLSPGTGVTPA 259
Q +A+WGVD +K D + D L+ + +S L R IVYS S + P
Sbjct: 126 -----QTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYSCSWPAYMWPF 180
Query: 260 MA---KEVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDML 316
E+ N +R D D+W + + + + F+ ++ G G W D DML
Sbjct: 181 QKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWT-SFNQERIVDVAGPGG--WNDPDML 237
Query: 317 PLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPT 376
+G N G L+ ++Q TQM LWA+ +PL D+R + +L+ +
Sbjct: 238 VIG-------NFG------LSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKD 284
Query: 377 VLEIN 381
V+ IN
Sbjct: 285 VIAIN 289
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 398
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 143/365 (39%), Gaps = 97/365 (26%)
Query: 33 ASSPPRGWNSYDSFCWT----------ISEEEFLQSAEI-ISQRLRPHGYEYVVVDYLWY 81
A +P GW ++ F ISE+ F++ AE+ +S+ + GYEY+ +D W
Sbjct: 6 ARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWM 65
Query: 82 RRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRG 141
+ D GR+ DP R+P G ++A VH+ GLK GI+
Sbjct: 66 APQR-------------DSEGRLQADPQRFP-----HGIRQLANYVHSKGLKLGIYA--- 104
Query: 142 ISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAF 201
D+G K A G+ ++
Sbjct: 105 -------------------------------DVGNKTCAGFPGSFGYYDIDA-------- 125
Query: 202 LRSLYQQYAEWGVDFVKHDCVFGDDLD--INEISFVSEVLKELDRPIVYSLSPGTGVTPA 259
Q +A+WGVD +K D + D L+ + +S L R IVYS + P
Sbjct: 126 -----QTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEWPLYMWPF 180
Query: 260 MA---KEVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDML 316
E+ N +R D D+W + + + + F+ ++ G G W D DML
Sbjct: 181 QKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWT-SFNQERIVDVAGPGG--WNDPDML 237
Query: 317 PLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPT 376
+G N G L+ ++Q TQM LWA+ +PL D+R + +L+ +
Sbjct: 238 VIG-------NFG------LSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKD 284
Query: 377 VLEIN 381
V+ IN
Sbjct: 285 VIAIN 289
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 146/367 (39%), Gaps = 78/367 (21%)
Query: 31 VRASSPPRGWNSYDSFCWTISEEEFLQSAE-IISQRLRPHGYEYVVVDYLWYRRKVKGAY 89
V P GWNS++++ I E +FL +AE I+S L GY YV +D W +K
Sbjct: 7 VTGKVPSLGWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCW---SMKDGR 63
Query: 90 VDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNA 149
VD G + P+ R+P G +AKKVHA+GLK GI+ G +T A
Sbjct: 64 VD----------GHIAPNATRFP-----DGIDGLAKKVHALGLKLGIYSTAGTATCAGYP 108
Query: 150 DTPILDTLKGGAYEDSGRQWRAKDIGLKERACA----WMQHGFMSVN---TKLGAGRAFL 202
+ + + + D G + LK C W Q +++ N K G
Sbjct: 109 ASLGYEDVDAADFADWGVDY------LKYDNCNVPSDW-QDEYVACNPDFVKTGPNGTCT 161
Query: 203 RSLYQQYAEWGVDFVKHDCV--FGDDLDI-----NEISFVSEVLKELDRPIVYSLSPGTG 255
+L A G D+ FG + +EI + + D V+S TG
Sbjct: 162 TALDPTLAPPGYDWSTSKSAERFGAMRNALAKQSHEIVLSMCIWGQAD---VFSWGNSTG 218
Query: 256 VTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNV-SRDFSAANMIGAKGLQGKSWPDLD 314
++ M+ ++S WG V N+ S ++ + G D D
Sbjct: 219 ISWRMSDDIS-------------PNWGSVTRILNLNSFKLNSVDFWGHN--------DAD 257
Query: 315 MLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITN 374
ML +G NL E RT LWA KSPL+ G D+ +L + +L+ N
Sbjct: 258 MLEVG-------------NGNLTAAETRTHFALWAAMKSPLLIGTDLAQLSQNNINLLKN 304
Query: 375 PTVLEIN 381
+L N
Sbjct: 305 KHLLAFN 311
>pdb|3LRK|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae
pdb|3LRL|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae With Melibiose
Length = 479
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 156/390 (40%), Gaps = 113/390 (28%)
Query: 19 LHRVSSISEAVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQR-LRPHGYEYVVVD 77
L V +S + +P GW+++++F +SE+ L +A+ IS L+ GY+Y+++D
Sbjct: 13 LKGVFGVSPSYNGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILD 72
Query: 78 YLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIH 137
W + DS GF V DE ++P+ G VA +H FG++
Sbjct: 73 DCWSSGR------DSDGFLVADE--------QKFPNGMG-----HVADHLHNNSFLFGMY 113
Query: 138 VMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGA 197
G T A Y S +G +E
Sbjct: 114 SSAGEYTCA--------------GYPGS--------LGREEEDA---------------- 135
Query: 198 GRAFLRSLYQQYAEWGVDFVKHD-CVFGDDLDINEISF-----VSEVLKELDRPIVYSLS 251
Q +A VD++K+D C EIS+ +S+ L + RP+ YSL
Sbjct: 136 ---------QFFANNRVDYLKYDNCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLC 186
Query: 252 P-GTGVTPAMAKEVSGLVNMYRITGD--------------DWDTWGDVAAHFNVSRDFSA 296
G +T SG+ N +R++GD D D + A F+ S
Sbjct: 187 NWGQDLTFYWG---SGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCS----I 239
Query: 297 ANMIGAKGLQGKS-----WPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMA 351
N++ G++ W DLD L +G NL DE++ ++WAM
Sbjct: 240 MNILNKAAPMGQNAGVGGWNDLDNLEVG-------------VGNLTDDEEKAHFSMWAMV 286
Query: 352 KSPLMFGGDVRKLDETTYSLITNPTVLEIN 381
KSPL+ G +V L ++YS+ + +V+ IN
Sbjct: 287 KSPLIIGANVNNLKASSYSIYSQASVIAIN 316
>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3HG3|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3TV8|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3TV8|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 404
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 142/365 (38%), Gaps = 97/365 (26%)
Query: 33 ASSPPRGWNSYDSFCWT----------ISEEEFLQSAEI-ISQRLRPHGYEYVVVDYLWY 81
A +P GW ++ F ISE+ F++ AE+ +S+ + GYEY+ +D W
Sbjct: 6 ARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWM 65
Query: 82 RRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRG 141
+ D GR+ DP R+P G ++A VH+ GLK GI+
Sbjct: 66 APQR-------------DSEGRLQADPQRFP-----HGIRQLANYVHSKGLKLGIYA--- 104
Query: 142 ISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAF 201
D+G K A G+ ++
Sbjct: 105 -------------------------------DVGNKTCAGFPGSFGYYDIDA-------- 125
Query: 202 LRSLYQQYAEWGVDFVKHDCVFGDDLD--INEISFVSEVLKELDRPIVYSLSPGTGVTPA 259
Q +A+WGVD +K + D L+ + +S L R IVYS + P
Sbjct: 126 -----QTFADWGVDLLKFAGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEWPLYMWPF 180
Query: 260 MA---KEVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDML 316
E+ N +R D D+W + + + + F+ ++ G G W D DML
Sbjct: 181 QKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWT-SFNQERIVDVAGPGG--WNDPDML 237
Query: 317 PLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPT 376
+G N G L+ ++Q TQM LWA+ +PL D+R + +L+ +
Sbjct: 238 VIG-------NFG------LSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKD 284
Query: 377 VLEIN 381
V+ IN
Sbjct: 285 VIAIN 289
>pdb|3LRM|A Chain A, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|B Chain B, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|C Chain C, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|D Chain D, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
Length = 479
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 156/390 (40%), Gaps = 113/390 (28%)
Query: 19 LHRVSSISEAVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQR-LRPHGYEYVVVD 77
L V +S + +P GW+++++F +SE+ L +A+ IS L+ GY+Y+++D
Sbjct: 13 LKGVFGVSPSYNGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILD 72
Query: 78 YLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIH 137
W + DS GF V DE ++P+ G VA +H FG++
Sbjct: 73 DCWSSGR------DSDGFLVADE--------QKFPNGMG-----HVADHLHNNSFLFGMY 113
Query: 138 VMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGA 197
G T A Y S +G +E
Sbjct: 114 SSAGEYTCA--------------GYPGS--------LGREEEDA---------------- 135
Query: 198 GRAFLRSLYQQYAEWGVDFVKH-DCVFGDDLDINEISF-----VSEVLKELDRPIVYSLS 251
Q +A VD++K+ +C EIS+ +S+ L + RP+ YSL
Sbjct: 136 ---------QFFANNRVDYLKYANCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLC 186
Query: 252 P-GTGVTPAMAKEVSGLVNMYRITGD--------------DWDTWGDVAAHFNVSRDFSA 296
G +T SG+ N +R++GD D D + A F+ S
Sbjct: 187 NWGQDLTFYWG---SGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCS----I 239
Query: 297 ANMIGAKGLQGKS-----WPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMA 351
N++ G++ W DLD L +G NL DE++ ++WAM
Sbjct: 240 MNILNKAAPMGQNAGVGGWNDLDNLEVG-------------VGNLTDDEEKAHFSMWAMV 286
Query: 352 KSPLMFGGDVRKLDETTYSLITNPTVLEIN 381
KSPL+ G +V L ++YS+ + +V+ IN
Sbjct: 287 KSPLIIGANVNNLKASSYSIYSQASVIAIN 316
>pdb|3H53|A Chain A, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H53|B Chain B, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H54|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H54|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H55|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3H55|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3IGU|A Chain A, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|3IGU|B Chain B, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|4DO4|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO4|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
Length = 400
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 142/366 (38%), Gaps = 103/366 (28%)
Query: 35 SPPRGWNSYDSF------------CWTISEEEFLQSAEIISQR-LRPHGYEYVVVDYLWY 81
+PP GW +++ F C ISE+ F++ A+ ++Q R GY Y+ +D W
Sbjct: 8 TPPMGWLAWERFRCNINCDEDPKNC--ISEQLFMEMADRMAQDGWRDMGYTYLNIDDCWI 65
Query: 82 RRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHV-MR 140
+ D GR++PDP R+P G +A VH++GLK GI+ M
Sbjct: 66 GGR--------------DASGRLMPDPKRFP-----HGIPFLADYVHSLGLKLGIYADMG 106
Query: 141 GISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRA 200
+ + T LD + A
Sbjct: 107 NFTCMGYPGTT--LDKVVQDA--------------------------------------- 125
Query: 201 FLRSLYQQYAEWGVDFVKHD-CVFGDDLDINEISFVSEVLKELDRPIVYSLS-PGT--GV 256
Q +AEW VD +K D C + ++ L RPI +S S P G+
Sbjct: 126 ------QTFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATGRPIAFSCSWPAYEGGL 179
Query: 257 TPAMAKEV-SGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDM 315
P + + + + N++R D D+W V + N F I W D DM
Sbjct: 180 PPRVQYSLLADICNLWRNYDDIQDSWWSVLSILNW---FVEHQDILQPVAGPGHWNDPDM 236
Query: 316 LPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNP 375
L +G N G L+L++ R QM LW + +PL+ D+R + ++ NP
Sbjct: 237 LLIG-------NFG------LSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNP 283
Query: 376 TVLEIN 381
+++IN
Sbjct: 284 LMIKIN 289
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
Length = 614
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/357 (19%), Positives = 127/357 (35%), Gaps = 77/357 (21%)
Query: 31 VRASSPPRGWNSYDSFCWTISEEEFLQSAE-IISQRLRPHGYEYVVVDYLWYRRKVKGAY 89
+ S P GW S++SF I + + ++ L GY Y+ +D W++
Sbjct: 7 ITVPSAPMGWASWNSFAAKIDYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQ------- 59
Query: 90 VDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNA 149
D G + D WP G + + +H+ GLK GI
Sbjct: 60 ------GTRDSAGNITVDTAEWPG-----GMSAITAYIHSKGLKAGI------------- 95
Query: 150 DTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY 209
Y D+G+ C + G+ + + + Q+
Sbjct: 96 ------------YTDAGKD-----------GCGYYYPTGRPAAPGSGSEGHYDQDML-QF 131
Query: 210 AEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPGTGVTPAMAKE-----V 264
+ WG DFVK D GD ++ + + + R + P T +
Sbjct: 132 STWGFDFVKVDWCGGDAEGLDAATTYKSISDAVGRAAATTGRPLTLSICNWGYQNPWNWA 191
Query: 265 SGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDP 324
+G ++R T D +G+ + ++ +F A+ + PD+ M+ + T
Sbjct: 192 AGQAPLWR-TSTDIIYYGNQPSMTSLLSNFDQTLHPTAQHTGYYNDPDMLMVGMDGFTAA 250
Query: 325 GSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEIN 381
+ RT M LWA++ +PL+ G D+ + T ++ NP V+ ++
Sbjct: 251 ---------------QNRTHMNLWAISGAPLLAGNDLTTMTSETAGILKNPEVIAVD 292
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 496 CLDASPKWKLTSKELRRGSFSKCKRDANQMWQLNPSGALISSYSGLC 542
CLDA + L + + C ANQ W +N G + + +GLC
Sbjct: 541 CLDA---YNLGTTNGTKVVIWDCNGQANQKWNINSDGTITNVNAGLC 584
>pdb|2DF4|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2F2A|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
pdb|2G5H|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|B Chain B, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|B Chain B, The High Resolution Structure Of Gatcab
Length = 483
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 363 KLDETTYSLITNPTVLEINTFSSNNKEFPYI-IGTKGNTRKIKVTPPHLSEVAESNTH 419
K D Y NP +I+ F E YI I G T++I +T H+ E A +TH
Sbjct: 75 KFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEVDGETKRIGITRLHMEEDAGKSTH 132
>pdb|2D1Z|A Chain A, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D1Z|B Chain B, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D20|A Chain A, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D20|B Chain B, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D22|A Chain A, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D22|B Chain B, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D23|A Chain A, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D23|B Chain B, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|A Chain A, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|B Chain B, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
Length = 436
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 496 CLDASPKWKLTSKELRRGSFSKCKRDANQMWQLNPSGALISSYSGLC 542
CLDA+ T ++ C NQ W+LN G+++ SGLC
Sbjct: 365 CLDAAGTGNGTKVQIY-----SCWGGDNQKWRLNSDGSIVGVQSGLC 406
>pdb|1XYF|A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1XYF|B Chain B, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1ISV|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISV|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISW|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISW|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISX|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISX|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISY|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISY|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISZ|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1ISZ|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1IT0|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1IT0|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1V6U|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6U|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6V|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6V|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6W|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6W|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6X|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
pdb|1V6X|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
Length = 436
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 496 CLDASPKWKLTSKELRRGSFSKCKRDANQMWQLNPSGALISSYSGLC 542
CLDA+ T ++ C NQ W+LN G+++ SGLC
Sbjct: 365 CLDAAGTGNGTKVQIY-----SCWGGDNQKWRLNSDGSIVGVQSGLC 406
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,131,964
Number of Sequences: 62578
Number of extensions: 803375
Number of successful extensions: 1877
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1814
Number of HSP's gapped (non-prelim): 38
length of query: 564
length of database: 14,973,337
effective HSP length: 104
effective length of query: 460
effective length of database: 8,465,225
effective search space: 3894003500
effective search space used: 3894003500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)