Query 008464
Match_columns 564
No_of_seqs 308 out of 1788
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 12:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02899 alpha-galactosidase 100.0 8E-115 2E-119 933.5 40.4 523 24-548 19-541 (633)
2 PLN03231 putative alpha-galact 100.0 1.3E-89 2.8E-94 711.6 29.5 350 36-391 1-356 (357)
3 PLN02229 alpha-galactosidase 100.0 6.2E-83 1.4E-87 672.4 31.4 340 29-460 56-415 (427)
4 PLN02808 alpha-galactosidase 100.0 3.8E-82 8.2E-87 662.8 29.1 342 26-458 22-379 (386)
5 PLN02692 alpha-galactosidase 100.0 7.2E-82 1.6E-86 661.8 31.0 340 27-457 47-403 (412)
6 KOG2366 Alpha-D-galactosidase 100.0 1.2E-69 2.7E-74 549.1 20.8 369 8-460 4-407 (414)
7 PF02065 Melibiase: Melibiase; 100.0 1.3E-32 2.8E-37 292.1 16.7 294 18-382 22-333 (394)
8 COG3345 GalA Alpha-galactosida 99.9 2.4E-23 5.1E-28 220.3 14.9 179 22-232 278-462 (687)
9 cd06592 GH31_glucosidase_KIAA1 99.8 2.7E-17 5.8E-22 170.6 22.8 202 34-284 12-227 (303)
10 PLN02355 probable galactinol-- 99.8 1.6E-17 3.4E-22 184.2 21.4 299 34-372 196-530 (758)
11 PLN02219 probable galactinol-- 99.8 4.4E-17 9.5E-22 180.4 21.4 308 21-372 178-522 (775)
12 PLN02684 Probable galactinol-- 99.7 1.1E-16 2.4E-21 177.0 22.4 295 38-372 204-521 (750)
13 PF05691 Raffinose_syn: Raffin 99.7 4.8E-16 1E-20 173.6 21.8 302 38-384 197-547 (747)
14 PLN02711 Probable galactinol-- 99.6 1E-14 2.2E-19 161.8 19.9 288 38-372 215-550 (777)
15 cd06593 GH31_xylosidase_YicI Y 99.6 6.9E-14 1.5E-18 145.5 18.5 196 49-289 20-235 (308)
16 PLN02982 galactinol-raffinose 99.4 1.7E-11 3.7E-16 136.3 20.6 215 118-370 390-632 (865)
17 PF01055 Glyco_hydro_31: Glyco 99.2 3.5E-10 7.5E-15 123.4 19.3 215 31-290 20-265 (441)
18 cd06604 GH31_glucosidase_II_Ma 99.2 7.8E-10 1.7E-14 116.7 20.3 195 50-289 21-248 (339)
19 PRK10658 putative alpha-glucos 99.2 7.1E-10 1.5E-14 126.0 20.1 211 31-289 258-494 (665)
20 cd00161 RICIN Ricin-type beta- 99.2 3E-10 6.5E-15 99.7 11.2 97 458-559 9-113 (124)
21 cd06598 GH31_transferase_CtsZ 99.1 1.5E-09 3.2E-14 113.6 16.8 201 50-290 21-243 (317)
22 cd06602 GH31_MGAM_SI_GAA This 99.1 3.4E-09 7.3E-14 111.9 17.7 198 50-289 21-230 (339)
23 cd06591 GH31_xylosidase_XylS X 99.1 3.5E-09 7.5E-14 110.9 16.5 195 50-289 21-242 (319)
24 PF14200 RicinB_lectin_2: Rici 99.1 4.5E-10 9.8E-15 98.2 8.1 69 489-560 20-93 (105)
25 smart00458 RICIN Ricin-type be 99.1 7.9E-10 1.7E-14 97.2 9.7 92 458-557 6-103 (117)
26 cd06599 GH31_glycosidase_Aec37 99.0 9.9E-09 2.1E-13 107.4 19.0 198 49-289 25-249 (317)
27 cd06600 GH31_MGAM-like This fa 99.0 6.5E-09 1.4E-13 108.7 17.6 195 50-289 21-226 (317)
28 cd06595 GH31_xylosidase_XylS-l 99.0 7.3E-09 1.6E-13 107.1 17.7 189 50-288 22-222 (292)
29 cd06597 GH31_transferase_CtsY 99.0 4.9E-08 1.1E-12 103.1 23.6 229 32-289 2-262 (340)
30 cd06601 GH31_lyase_GLase GLase 99.0 3.9E-08 8.5E-13 103.3 20.7 112 50-222 21-132 (332)
31 PF14200 RicinB_lectin_2: Rici 99.0 1.6E-09 3.5E-14 94.7 7.5 90 431-528 2-104 (105)
32 cd06594 GH31_glucosidase_YihQ 99.0 6.2E-09 1.4E-13 108.8 13.3 195 51-288 21-245 (317)
33 COG1501 Alpha-glucosidases, fa 99.0 1.5E-08 3.3E-13 116.5 17.6 209 31-288 256-491 (772)
34 PF00652 Ricin_B_lectin: Ricin 98.9 4.6E-09 9.9E-14 93.0 10.1 96 458-559 11-115 (124)
35 cd06589 GH31 The enzymes of gl 98.9 1.6E-07 3.4E-12 95.9 19.9 166 32-289 2-197 (265)
36 PLN02763 hydrolase, hydrolyzin 98.8 2.9E-07 6.3E-12 107.4 22.8 153 31-222 178-335 (978)
37 cd06603 GH31_GANC_GANAB_alpha 98.8 4.7E-08 1E-12 103.2 12.1 196 49-289 20-248 (339)
38 PRK10426 alpha-glucosidase; Pr 98.6 4.5E-07 9.7E-12 103.1 13.3 215 31-287 199-441 (635)
39 cd00161 RICIN Ricin-type beta- 98.4 1E-06 2.2E-11 77.1 9.0 95 419-528 22-124 (124)
40 smart00458 RICIN Ricin-type be 98.4 1.3E-06 2.9E-11 76.5 8.6 93 419-528 17-116 (117)
41 PF10566 Glyco_hydro_97: Glyco 98.1 2.9E-05 6.2E-10 79.2 11.6 131 46-251 25-156 (273)
42 KOG1065 Maltase glucoamylase a 98.0 5.4E-05 1.2E-09 86.0 12.0 148 33-221 290-446 (805)
43 PF00652 Ricin_B_lectin: Ricin 97.6 0.00014 2.9E-09 64.1 7.1 61 493-558 11-72 (124)
44 KOG3736 Polypeptide N-acetylga 96.4 0.0042 9.1E-08 69.4 5.4 84 458-549 463-553 (578)
45 KOG2366 Alpha-D-galactosidase 96.4 0.00097 2.1E-08 69.8 0.4 155 209-395 37-193 (414)
46 PF02638 DUF187: Glycosyl hydr 95.9 0.23 5E-06 52.0 15.2 89 119-221 71-162 (311)
47 PF13200 DUF4015: Putative gly 95.7 0.13 2.7E-06 54.0 12.1 128 51-222 11-146 (316)
48 TIGR01515 branching_enzym alph 95.3 0.26 5.6E-06 56.5 14.1 133 64-222 164-297 (613)
49 KOG3738 Predicted polypeptide 95.0 0.014 3E-07 61.7 2.2 84 460-549 442-533 (559)
50 KOG1066 Glucosidase II catalyt 94.1 0.15 3.2E-06 57.6 7.9 146 22-207 340-491 (915)
51 KOG3736 Polypeptide N-acetylga 93.5 0.16 3.4E-06 57.2 6.8 90 419-529 478-573 (578)
52 PLN02361 alpha-amylase 93.2 1.6 3.4E-05 47.4 13.7 38 187-224 145-183 (401)
53 PLN00196 alpha-amylase; Provis 92.5 1.5 3.3E-05 48.0 12.6 35 188-222 170-205 (428)
54 PRK14706 glycogen branching en 92.3 0.8 1.7E-05 52.7 10.6 141 55-222 166-308 (639)
55 PLN02784 alpha-amylase 92.2 2 4.4E-05 50.5 13.4 36 188-223 640-676 (894)
56 PF14871 GHL6: Hypothetical gl 92.1 1.9 4.1E-05 39.4 10.7 123 62-220 5-131 (132)
57 PLN02960 alpha-amylase 91.4 3.3 7.1E-05 49.0 14.1 143 55-222 415-558 (897)
58 smart00812 Alpha_L_fucos Alpha 90.6 4 8.7E-05 44.1 13.1 21 120-140 130-150 (384)
59 PRK12568 glycogen branching en 89.8 3 6.4E-05 48.6 11.9 142 55-222 268-410 (730)
60 TIGR02403 trehalose_treC alpha 89.5 6.5 0.00014 44.5 14.3 35 189-223 162-196 (543)
61 TIGR02104 pulA_typeI pullulana 89.5 3.8 8.1E-05 47.0 12.5 57 190-248 288-345 (605)
62 COG0296 GlgB 1,4-alpha-glucan 89.4 1.7 3.6E-05 49.6 9.4 136 54-223 162-306 (628)
63 PRK14705 glycogen branching en 89.3 2.1 4.5E-05 52.6 10.6 133 64-222 773-906 (1224)
64 COG1649 Uncharacterized protei 87.9 8.5 0.00018 41.9 13.1 120 119-252 116-272 (418)
65 PRK05402 glycogen branching en 87.9 7.2 0.00016 45.7 13.7 141 56-222 265-406 (726)
66 PRK12313 glycogen branching en 87.4 11 0.00023 43.5 14.5 133 64-222 178-311 (633)
67 cd06596 GH31_CPE1046 CPE1046 i 87.3 2.2 4.7E-05 43.4 7.7 102 119-290 76-182 (261)
68 PRK10785 maltodextrin glucosid 87.0 13 0.00028 42.7 14.7 174 51-248 177-369 (598)
69 PF01120 Alpha_L_fucos: Alpha- 86.2 4.9 0.00011 42.7 10.2 22 120-141 140-161 (346)
70 PLN02447 1,4-alpha-glucan-bran 86.2 7.5 0.00016 45.6 12.3 134 64-222 258-392 (758)
71 TIGR02402 trehalose_TreZ malto 86.2 11 0.00024 42.6 13.5 103 119-244 161-270 (542)
72 TIGR02456 treS_nterm trehalose 85.0 14 0.00031 41.7 13.6 34 189-222 166-199 (539)
73 PRK10933 trehalose-6-phosphate 82.4 14 0.0003 42.0 12.2 34 189-222 169-202 (551)
74 PRK03705 glycogen debranching 80.8 14 0.0003 42.8 11.6 34 190-223 305-339 (658)
75 PF03498 CDtoxinA: Cytolethal 80.8 6.2 0.00013 37.0 7.2 64 489-560 57-125 (150)
76 KOG3738 Predicted polypeptide 78.7 0.59 1.3E-05 49.8 -0.3 52 493-549 440-492 (559)
77 TIGR02102 pullulan_Gpos pullul 75.1 17 0.00038 44.5 10.6 57 190-248 611-668 (1111)
78 TIGR02103 pullul_strch alpha-1 74.1 29 0.00063 41.6 11.9 59 191-251 466-525 (898)
79 KOG3737 Predicted polypeptide 70.3 7.7 0.00017 41.5 5.3 82 458-548 489-577 (603)
80 TIGR02100 glgX_debranch glycog 65.5 32 0.0007 40.1 9.8 34 190-223 310-344 (688)
81 PF13199 Glyco_hydro_66: Glyco 65.3 21 0.00046 40.5 7.9 274 31-361 98-393 (559)
82 PLN02877 alpha-amylase/limit d 65.0 65 0.0014 39.0 12.2 59 192-252 530-597 (970)
83 PRK14510 putative bifunctional 65.0 41 0.00089 41.9 11.0 56 190-245 312-368 (1221)
84 PLN03244 alpha-amylase; Provis 63.3 20 0.00043 42.2 7.3 91 119-222 442-533 (872)
85 KOG3737 Predicted polypeptide 62.9 4.6 0.0001 43.1 2.0 51 491-548 487-538 (603)
86 PF07302 AroM: AroM protein; 61.9 12 0.00025 37.4 4.6 141 50-251 67-210 (221)
87 PF01791 DeoC: DeoC/LacD famil 60.9 46 0.001 33.1 8.8 52 200-251 146-201 (236)
88 PF00128 Alpha-amylase: Alpha 58.7 23 0.00049 35.7 6.3 62 187-250 135-197 (316)
89 PRK09441 cytoplasmic alpha-amy 56.6 27 0.00059 38.8 6.9 54 188-243 200-254 (479)
90 TIGR01370 cysRS possible cyste 55.7 85 0.0018 33.1 9.9 85 122-223 85-170 (315)
91 KOG0470 1,4-alpha-glucan branc 55.1 43 0.00093 38.9 8.0 145 58-222 256-404 (757)
92 COG3469 Chitinase [Carbohydrat 54.9 23 0.0005 36.0 5.2 54 199-252 120-180 (332)
93 cd02931 ER_like_FMN Enoate red 54.8 53 0.0011 35.4 8.5 80 48-140 138-227 (382)
94 PF02571 CbiJ: Precorrin-6x re 54.6 74 0.0016 32.3 9.1 62 190-251 70-138 (249)
95 COG1306 Uncharacterized conser 52.7 1.4E+02 0.0031 31.2 10.5 37 186-222 182-218 (400)
96 KOG3111 D-ribulose-5-phosphate 52.1 16 0.00034 35.7 3.5 25 119-143 100-124 (224)
97 cd06414 GH25_LytC-like The Lyt 52.0 13 0.00029 35.8 3.1 74 46-142 63-137 (191)
98 cd06545 GH18_3CO4_chitinase Th 51.4 1.8E+02 0.0038 29.2 11.3 53 196-251 81-138 (253)
99 cd06522 GH25_AtlA-like AtlA is 51.1 2.3E+02 0.005 27.2 11.6 19 120-138 44-62 (192)
100 PRK06852 aldolase; Validated 50.9 84 0.0018 33.0 8.9 50 201-252 189-239 (304)
101 KOG3340 Alpha-L-fucosidase [Ca 50.0 25 0.00053 37.0 4.7 23 120-142 152-174 (454)
102 PF03102 NeuB: NeuB family; I 49.5 50 0.0011 33.4 6.9 16 119-134 57-72 (241)
103 PF14488 DUF4434: Domain of un 49.4 35 0.00075 32.4 5.4 74 47-140 14-89 (166)
104 cd06522 GH25_AtlA-like AtlA is 49.3 23 0.00049 34.3 4.2 67 46-141 63-133 (192)
105 TIGR03852 sucrose_gtfA sucrose 48.1 35 0.00076 37.9 5.9 35 188-222 157-191 (470)
106 cd02803 OYE_like_FMN_family Ol 47.5 2.4E+02 0.0051 29.3 11.9 32 48-79 129-163 (327)
107 PRK13840 sucrose phosphorylase 46.3 23 0.00049 39.7 4.1 60 188-248 161-231 (495)
108 PF02449 Glyco_hydro_42: Beta- 46.2 37 0.0008 36.3 5.7 61 50-139 7-68 (374)
109 cd02874 GH18_CFLE_spore_hydrol 45.6 75 0.0016 32.9 7.8 49 196-244 85-138 (313)
110 COG1523 PulA Type II secretory 43.4 86 0.0019 36.6 8.3 33 190-222 328-361 (697)
111 PRK13523 NADPH dehydrogenase N 43.0 74 0.0016 33.7 7.3 73 48-138 130-214 (337)
112 cd06416 GH25_Lys1-like Lys-1 i 42.4 21 0.00046 34.5 2.9 23 119-141 111-133 (196)
113 TIGR03569 NeuB_NnaB N-acetylne 41.7 54 0.0012 34.7 6.0 17 118-134 76-92 (329)
114 cd06415 GH25_Cpl1-like Cpl-1 l 41.5 3.3E+02 0.0071 26.2 12.2 19 120-138 40-58 (196)
115 cd02875 GH18_chitobiase Chitob 41.5 77 0.0017 33.8 7.2 57 195-251 93-157 (358)
116 cd06546 GH18_CTS3_chitinase GH 40.7 3.7E+02 0.0079 27.2 11.7 53 198-252 97-150 (256)
117 cd04735 OYE_like_4_FMN Old yel 38.9 1.1E+02 0.0023 32.6 7.8 76 47-140 131-224 (353)
118 COG3325 ChiA Chitinase [Carboh 38.9 94 0.002 34.0 7.2 65 187-251 141-223 (441)
119 PRK10605 N-ethylmaleimide redu 38.6 1.3E+02 0.0027 32.3 8.3 82 48-140 147-234 (362)
120 COG3669 Alpha-L-fucosidase [Ca 37.4 1.3E+02 0.0029 32.6 7.9 23 120-142 103-125 (430)
121 cd06549 GH18_trifunctional GH1 36.7 83 0.0018 32.6 6.4 55 195-249 85-144 (298)
122 cd02871 GH18_chitinase_D-like 36.1 1.1E+02 0.0024 31.9 7.3 56 197-252 94-155 (312)
123 PRK08227 autoinducer 2 aldolas 35.9 2.2E+02 0.0049 29.2 9.2 43 201-252 159-201 (264)
124 TIGR00060 L18_bact ribosomal p 35.5 69 0.0015 28.6 4.7 51 51-134 64-114 (114)
125 COG1830 FbaB DhnA-type fructos 35.2 3E+02 0.0064 28.3 9.7 44 202-252 168-211 (265)
126 cd02933 OYE_like_FMN Old yello 34.7 5.8E+02 0.012 27.0 13.0 77 48-137 140-224 (338)
127 PRK06769 hypothetical protein; 34.6 65 0.0014 30.4 4.8 21 119-139 32-52 (173)
128 cd06415 GH25_Cpl1-like Cpl-1 l 34.3 41 0.00089 32.5 3.4 23 119-141 109-131 (196)
129 COG1902 NemA NADH:flavin oxido 33.7 1.8E+02 0.0039 31.3 8.4 76 47-140 136-225 (363)
130 cd03465 URO-D_like The URO-D _ 33.3 1.6E+02 0.0034 30.5 7.9 51 65-139 176-229 (330)
131 cd02932 OYE_YqiM_FMN Old yello 33.1 1.8E+02 0.004 30.5 8.4 73 48-138 142-228 (336)
132 cd00598 GH18_chitinase-like Th 33.0 4.3E+02 0.0093 25.0 10.9 55 198-252 89-148 (210)
133 cd06548 GH18_chitinase The GH1 32.3 95 0.0021 32.4 6.0 54 199-252 111-182 (322)
134 cd02930 DCR_FMN 2,4-dienoyl-Co 32.2 1.5E+02 0.0033 31.5 7.6 31 48-78 125-158 (353)
135 cd08577 PI-PLCc_GDPD_SF_unchar 30.1 1.1E+02 0.0023 30.7 5.6 21 120-140 187-207 (228)
136 PRK09441 cytoplasmic alpha-amy 30.0 98 0.0021 34.4 6.0 16 119-134 82-97 (479)
137 CHL00139 rpl18 ribosomal prote 29.8 1E+02 0.0022 27.3 4.8 52 50-134 58-109 (109)
138 PF05913 DUF871: Bacterial pro 29.0 1.2E+02 0.0025 32.7 6.0 39 206-252 82-120 (357)
139 PRK09250 fructose-bisphosphate 28.9 3.7E+02 0.008 28.8 9.6 52 201-252 218-290 (348)
140 TIGR01463 mtaA_cmuA methyltran 26.8 2.5E+02 0.0054 29.4 8.1 52 64-139 187-241 (340)
141 COG0407 HemE Uroporphyrinogen- 26.8 1.8E+02 0.0039 31.2 6.9 51 64-137 196-247 (352)
142 PTZ00032 60S ribosomal protein 26.3 1.2E+02 0.0025 29.9 4.9 51 51-134 161-211 (211)
143 COG2200 Rtn c-di-GMP phosphodi 26.3 1.1E+02 0.0023 31.0 5.0 45 206-250 164-213 (256)
144 PF00016 RuBisCO_large: Ribulo 26.2 1.4E+02 0.003 31.5 5.8 50 202-251 32-88 (309)
145 smart00642 Aamy Alpha-amylase 26.0 1.4E+02 0.0029 28.3 5.3 18 119-136 71-88 (166)
146 cd02872 GH18_chitolectin_chito 25.9 1.2E+02 0.0026 32.1 5.5 53 199-251 98-159 (362)
147 cd00465 URO-D_CIMS_like The UR 25.4 1.5E+02 0.0032 30.3 6.0 53 64-138 151-206 (306)
148 PF00834 Ribul_P_3_epim: Ribul 24.2 1E+02 0.0022 30.3 4.2 26 119-144 93-118 (201)
149 smart00636 Glyco_18 Glycosyl h 24.0 2E+02 0.0043 29.9 6.7 54 199-252 93-155 (334)
150 cd06544 GH18_narbonin Narbonin 24.0 2.6E+02 0.0056 28.4 7.3 44 199-243 99-146 (253)
151 COG2099 CobK Precorrin-6x redu 23.7 2.1E+02 0.0046 29.2 6.4 63 189-251 69-136 (257)
152 cd08607 GDPD_GDE5 Glycerophosp 22.9 1.3E+02 0.0029 30.6 5.1 17 206-222 274-290 (290)
153 PF01183 Glyco_hydro_25: Glyco 22.7 91 0.002 29.5 3.5 72 45-141 56-130 (181)
154 cd02876 GH18_SI-CLP Stabilin-1 22.6 1.7E+02 0.0037 30.4 5.9 56 196-251 90-155 (318)
155 cd06523 GH25_PlyB-like PlyB is 22.5 1.5E+02 0.0032 28.2 4.9 65 45-140 59-124 (177)
156 TIGR03586 PseI pseudaminic aci 22.3 3.2E+02 0.0069 29.0 7.7 40 206-251 103-142 (327)
157 cd06542 GH18_EndoS-like Endo-b 22.1 5.5E+02 0.012 25.5 9.3 56 196-251 87-151 (255)
158 KOG0410 Predicted GTP binding 22.1 52 0.0011 34.9 1.7 34 189-222 263-297 (410)
159 TIGR03332 salvage_mtnW 2,3-dik 21.9 1.6E+02 0.0034 32.3 5.5 51 202-252 157-214 (407)
160 PF00704 Glyco_hydro_18: Glyco 21.8 1.1E+02 0.0025 31.5 4.3 54 198-251 100-164 (343)
161 PLN03059 beta-galactosidase; P 21.6 1.5E+03 0.032 27.4 14.3 73 46-146 52-124 (840)
162 PHA02119 hypothetical protein 21.6 88 0.0019 25.3 2.5 27 104-134 44-70 (87)
163 cd08148 RuBisCO_large Ribulose 21.6 1.6E+02 0.0034 31.8 5.3 52 201-252 144-202 (366)
164 cd08605 GDPD_GDE5_like_1_plant 21.5 1.4E+02 0.003 30.5 4.8 17 206-222 266-282 (282)
165 PRK05593 rplR 50S ribosomal pr 21.5 1.7E+02 0.0038 26.2 4.8 52 50-134 66-117 (117)
166 cd08207 RLP_NonPhot Ribulose b 21.4 1.6E+02 0.0036 32.1 5.5 51 202-252 161-218 (406)
167 TIGR03326 rubisco_III ribulose 21.4 1.8E+02 0.0039 31.8 5.8 50 202-251 162-218 (412)
168 TIGR03315 Se_ygfK putative sel 21.3 62 0.0013 39.5 2.4 49 66-140 256-304 (1012)
169 TIGR02401 trehalose_TreY malto 21.3 2.3E+02 0.0049 33.9 6.9 50 188-238 221-272 (825)
170 cd04747 OYE_like_5_FMN Old yel 21.2 1.6E+02 0.0034 31.7 5.2 82 48-140 132-220 (361)
171 cd08209 RLP_DK-MTP-1-P-enolase 21.0 1.6E+02 0.0035 32.0 5.3 50 202-251 142-198 (391)
172 COG0366 AmyA Glycosidases [Car 20.8 1.6E+02 0.0035 32.1 5.5 76 108-217 8-94 (505)
173 cd06523 GH25_PlyB-like PlyB is 20.2 7.3E+02 0.016 23.4 10.3 20 119-138 40-59 (177)
174 KOG2672 Lipoate synthase [Coen 20.1 1.5E+02 0.0032 30.8 4.4 31 190-226 138-168 (360)
No 1
>PLN02899 alpha-galactosidase
Probab=100.00 E-value=8.1e-115 Score=933.46 Aligned_cols=523 Identities=77% Similarity=1.293 Sum_probs=473.7
Q ss_pred ccCccCCCCCCCCceEeccccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCC
Q 008464 24 SISEAVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGR 103 (564)
Q Consensus 24 ~~~~~~~~~~~~pPmGWnSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~ 103 (564)
...++.++++++||||||||+.|.++|||++|+++||+|++||+++||+||+|||||+...+.|.|+++.|++.+|++|+
T Consensus 19 ~~~~~~~glA~TPPMGWNSWn~f~~~I~E~~i~~~Ad~vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~Gr 98 (633)
T PLN02899 19 IGASSQQQLASFPPRGWNSYDSFSWIVSEEEFLQNAEIVSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGR 98 (633)
T ss_pred ccccccCcccCCCCCCCcchhhhccCCCHHHHHHHHHHHHcchHhhCCeEEEEccccccccccccccccccccccCCCCC
Confidence 44677889999999999999999999999999999999999999999999999999998766688999999999999999
Q ss_pred ceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCcccccccccccccccc
Q 008464 104 MIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAW 183 (564)
Q Consensus 104 ~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~ 183 (564)
++|||+|||++++|+|||+||||||+||||||||.++|+.+||++.++||+++.+++.|+++|+.|+++||..+..+|.|
T Consensus 99 LvPDp~RFPSs~~g~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w 178 (633)
T PLN02899 99 PIPDPGRWPSSRGGKGFTEVAEKVHAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACAW 178 (633)
T ss_pred CccCcccCCCCccCCCcHHHHHHHHhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEEEcCCCCCCCchhhhh
Q 008464 184 MQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPGTGVTPAMAKE 263 (564)
Q Consensus 184 ~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~~s~s~~~~~~p~~~~~ 263 (564)
++.+++.+|.++|++++|+++++++||+|||||||+|+|+++.+++++|++|++||+++||||+||+|+|...+|.|+..
T Consensus 179 ~~~g~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~~~~~ey~~ms~AL~aTGRPIvySLspG~~~~p~wa~~ 258 (633)
T PLN02899 179 MSHGFMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDDFDLEEITYVSEVLKELDRPIVYSLSPGTSATPTMAKE 258 (633)
T ss_pred CCCCcccccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCCCChHHHHHHHHHHHHhCCCeEEEecCCcccchhhhhh
Confidence 99999999999999999999999999999999999999988777788999999999999999999999988778888888
Q ss_pred hcccccEEEEecCCCCChhhHHHHhhhhhhhhhhhhhcccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCHHHHHH
Q 008464 264 VSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRT 343 (564)
Q Consensus 264 ~~~~~n~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~~g~~~~~~lT~~E~rt 343 (564)
+.+++|||||++|+++.|.++..+++..+.|+.+..+++++++|++|||||||+||++++++.|.|+|+.++||.+|+||
T Consensus 259 v~~~aNmWRitgDI~D~W~sV~~~~d~~~~~~~~~~~g~~G~~gg~WNDpDML~VG~lg~~~~n~G~~r~~~LT~dE~rT 338 (633)
T PLN02899 259 VSGLVNMYRITGDDWDTWGDVAAHFDVSRDFAAAGLIGAKGLRGRSWPDLDMLPLGWLTDPGSNVGPHRACNLTLDEQKT 338 (633)
T ss_pred hhccCccceecCCcccchHHHHHHHHHHHHHhhccccccCCCCCCCCCCcceecccCCCccccccCccccCCCCHHHHHH
Confidence 88899999999999999999999999888888766666677777899999999999999988888999999999999999
Q ss_pred HHHHHHHhcCCeeeccCCCCCCHhHHhccCChhhhhhccCCCCCCccceeccccCCCCCccccCCCccceeecccceecc
Q 008464 344 QMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTKGNTRKIKVTPPHLSEVAESNTHVLGL 423 (564)
Q Consensus 344 ~~slwa~~~sPLiig~Dl~~~~~~~l~lL~N~eliainqd~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~lGL 423 (564)
||+||||++||||+|.||++|++++++||+||||||||||+.+++++.++.+++.......-+ .. ....+-+...|||
T Consensus 339 hfSLWAm~aSPLiiG~DLr~md~~tl~ILTNkeVIAINQds~~n~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l 416 (633)
T PLN02899 339 QMTLWAMAKSPLMYGGDLRKLDQATYSLITNPTLLEINSHSSNNMEFPYVTSTRRNKKKSHSQ-HS-TGVGKSDPSVLGL 416 (633)
T ss_pred HHHHHHHHhCchhhcCCcccCCHHHHHHhcCHHHeEEccCccCCeeeeeEecccccccccccc-cc-ccCCCCCcceEEE
Confidence 999999999999999999999999999999999999999999999999998766211100000 00 2223445678999
Q ss_pred cCCCCCcccccccccccCcCceEEEEecCCCCCCCCeeeccCCCCCCCCcEeecCCCCccEEEEEeecCCCceEeeCCCC
Q 008464 424 TSCKDPKANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVHLLASKGVGVCLDASPKW 503 (564)
Q Consensus 424 ~~~~~~~~dlWt~~~~~~~~g~i~~~~~~~~~~~~~~Cld~~~~~~a~~~~~c~g~~~Q~w~~~~~~~~~g~CLd~~~~~ 503 (564)
++|+.+....|+.+++....++|||+.+...++..++||..+....+++.+.-..+..|...|+.++.....|||+++..
T Consensus 417 ~~c~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 496 (633)
T PLN02899 417 TSCKDSKANGWSIRSLDKDLDQICWNEKMGRRGEEPLCLYKTKPLLASDEEIIHNSEYQGKLHLLTSDGGELCLDASPKQ 496 (633)
T ss_pred EecCCCCCCceeEEecCCCcceeeccccccccCCCCeeeecccCCcccchhhhhcccccceEEeeeccccChhhccCCCC
Confidence 99999999999999888889999999999999999999999988888877777888899999988777678899998876
Q ss_pred ccCCCcceeeEEeccCCCCCCceEECCCCcEEeCCCCceEEecCC
Q 008464 504 KLTSKELRRGSFSKCKRDANQMWQLNPSGALISSYSGLCATVNLV 548 (564)
Q Consensus 504 ~~~~G~t~~v~~~~C~g~~nQ~W~~~~~G~l~n~~SG~Cldv~~~ 548 (564)
..|.++.+.-.+..|...+||+|+|+++|+|+|.+||+|++|...
T Consensus 497 ~~~~~~~~~~~fs~c~~~~~q~w~l~~~g~l~~~~sglca~v~~~ 541 (633)
T PLN02899 497 KRTSKDFRSGSFSPCRWDANQMWELNNNGTLISSYSGLCATVNSV 541 (633)
T ss_pred CcCHhHhhccccCCCCCChhhceeeCCCCCEecCccccceEeecc
Confidence 666665444568999999999999999999999999999999754
No 2
>PLN03231 putative alpha-galactosidase; Provisional
Probab=100.00 E-value=1.3e-89 Score=711.58 Aligned_cols=350 Identities=60% Similarity=1.124 Sum_probs=306.5
Q ss_pred CceEeccccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccc---cCCCcccccCCCCceeCCCCCC
Q 008464 36 PPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYV---DSLGFDVIDEWGRMIPDPDRWP 112 (564)
Q Consensus 36 pPmGWnSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~---~~~~~~~~d~~G~~~~d~~kFP 112 (564)
||||||||+.|.|+|||++|+++||+|++||+++||+||+|||||+...+.|-+. .+.+...||++|+++|||+|||
T Consensus 1 PpMGWNSWn~f~~~i~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFP 80 (357)
T PLN03231 1 PPRGWNSYDSFSFTISEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWP 80 (357)
T ss_pred CCCCccchhccCcCcCHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCC
Confidence 8999999999999999999999999889999999999999999999754322111 1122335799999999999999
Q ss_pred CCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccC-CCccccccccccccccccCCCCceee
Q 008464 113 SSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQHGFMSV 191 (564)
Q Consensus 113 ~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~-g~~~~~~Di~~~~~~~~~~~~~~~~l 191 (564)
++++++|||+||||||+||||||||.++|+.+|+++.++||.|. +.+ |++++++||..+...|.|+++.|+.|
T Consensus 81 s~~~~~G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~------~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v 154 (357)
T PLN03231 81 STTGGKGFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGA------FKSNGHAWNAKDIALMDQACPWMQQCFVGV 154 (357)
T ss_pred CCccccCcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCC------Ccccccccchhhhccccccccccccccccc
Confidence 99999999999999999999999999999999999888998854 221 56678899998888999999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCC-CChHHHHHHHHHHHhCCCCeEEEcCCCCCCCchhhhhhcccccE
Q 008464 192 NTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDD-LDINEISFVSEVLKELDRPIVYSLSPGTGVTPAMAKEVSGLVNM 270 (564)
Q Consensus 192 D~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~-~~~~~y~~m~~al~~~gr~i~~s~s~~~~~~p~~~~~~~~~~n~ 270 (564)
|.+||++++|+++++++|++|||||||+|+|+... ...++|.+|++||+++||||+||+|++...+|.|+..+.+++||
T Consensus 155 ~~~~~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Slc~g~~~~~~~~~~i~~~an~ 234 (357)
T PLN03231 155 NTSSEGGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSLSPGDGATPGLAARVAQLVNM 234 (357)
T ss_pred cccchhHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEEEecCCCCCCchhhhhhhhhcCc
Confidence 99999999999999999999999999999998643 45689999999999999999999999766677788777889999
Q ss_pred EEEecCCCCChhhHHHHhhhhhhhhhhhhhcccCC-CCCCCCCCCCCcccccCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 008464 271 YRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGL-QGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWA 349 (564)
Q Consensus 271 ~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~-~~~~wnDpDml~~g~~~~~~~~~g~~~~~~lT~~E~rt~~slwa 349 (564)
|||+.||++.|.++.++++..+.|+.+....+++. +|++|||||||+||.+++++...|++|+++||.+|+||||||||
T Consensus 235 WR~s~DI~d~W~~v~~~~~~~~~~~~~~~~~~~~~agpG~WnD~DML~vG~~g~~~~~~g~~~~~glT~~E~rthfslWa 314 (357)
T PLN03231 235 YRVTGDDWDDWKYLVKHFDVARDFAAAGLIAIPSVVGGKSWVDLDMLPFGRLTDPAAAYGPYRNSRLSLEEKKTQMTLWA 314 (357)
T ss_pred ccccCCcccchhhHHHHHHHHHHHhhhcccccccCCCCCCCCCccchhcCCCCCCcccccccccCCCCHHHHHHHHHHHH
Confidence 99999999999999999988777765444333322 46899999999999876554334566778999999999999999
Q ss_pred HhcCCeeeccCCCCCCHhHHhccCChhhhhhccCCCCCCccc
Q 008464 350 MAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFP 391 (564)
Q Consensus 350 ~~~sPLiig~Dl~~~~~~~l~lL~N~eliainqd~~~~~~~~ 391 (564)
|++||||+|.||++|++++++|||||||||||||++++++++
T Consensus 315 m~~SPLiiG~DL~~~~~~tl~iLtN~evIAINQD~lG~~~~~ 356 (357)
T PLN03231 315 VAKSPLMFGGDLRRLDNETLSLLTNPTVLEVNSHSTGNRNAQ 356 (357)
T ss_pred HHhCchhhcCCcccCCHHHHHHhcChHHheecCCccccccCC
Confidence 999999999999999999999999999999999999998864
No 3
>PLN02229 alpha-galactosidase
Probab=100.00 E-value=6.2e-83 Score=672.45 Aligned_cols=340 Identities=26% Similarity=0.401 Sum_probs=290.1
Q ss_pred CCCCCCCCceEeccccccccCCCHHHHHHHHHHH-HHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeC
Q 008464 29 VPVRASSPPRGWNSYDSFCWTISEEEFLQSAEII-SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPD 107 (564)
Q Consensus 29 ~~~~~~~pPmGWnSW~~~~~~i~e~~i~~~ad~~-~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d 107 (564)
+++++++||||||||+.|+++|||++|+++||.| ++||+++||+||+|||||+... ||+.|+|+||
T Consensus 56 ~ngla~tPpmGWnSWn~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~-------------rd~~G~l~~d 122 (427)
T PLN02229 56 NNGLARTPQMGWNSWNFFACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLK-------------RDSKGQLVPD 122 (427)
T ss_pred cCCccCCCCceEEchhhhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCC-------------cCCCCCEEEC
Confidence 4789999999999999999999999999999964 8999999999999999999743 5789999999
Q ss_pred CCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCC
Q 008464 108 PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHG 187 (564)
Q Consensus 108 ~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~ 187 (564)
++|||+ |||+|+||||++|||||||.++|+.+|+.+|++
T Consensus 123 ~~rFP~-----G~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS------------------------------------ 161 (427)
T PLN02229 123 PKTFPS-----GIKLLADYVHSKGLKLGIYSDAGVFTCQVRPGS------------------------------------ 161 (427)
T ss_pred hhhcCC-----cHHHHHHHHHHCCCceEEeccCCCcccCCCCCC------------------------------------
Confidence 999998 999999999999999999999999999755432
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCCC-hHHHHHHHHHHHhCCCCeEEEcCCCCCCCch-hhhhhc
Q 008464 188 FMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD-INEISFVSEVLKELDRPIVYSLSPGTGVTPA-MAKEVS 265 (564)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~-~~~y~~m~~al~~~gr~i~~s~s~~~~~~p~-~~~~~~ 265 (564)
..|++.++++|++|||||||+|+|+....+ .++|+.|++||+++||||+||+|++....|. |+ .
T Consensus 162 -----------~g~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~WG~~~p~~w~---~ 227 (427)
T PLN02229 162 -----------LFHEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRSIFYSLCEWGVDDPALWA---G 227 (427)
T ss_pred -----------ccHHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCCcEEEecCCCCCCHHHHH---H
Confidence 235667789999999999999999875544 4689999999999999999999986655553 43 4
Q ss_pred ccccEEEEecCCCCChhhHHHHhhhhhhhhhhhhhcccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCHHHHHHHH
Q 008464 266 GLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQM 345 (564)
Q Consensus 266 ~~~n~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~~g~~~~~~lT~~E~rt~~ 345 (564)
+++|+||+++||++.|.++.++++....|+.+ . +|++|||||||+||+ .+||.+|+||||
T Consensus 228 ~~~n~WR~s~DI~d~W~sv~~i~~~~~~~~~~-----a--gPG~wnDpDML~vGn-------------~glT~~E~rthf 287 (427)
T PLN02229 228 KVGNSWRTTDDINDTWASMTTIADLNNKWAAY-----A--GPGGWNDPDMLEVGN-------------GGMTYEEYRGHF 287 (427)
T ss_pred hhcCeeeccCCcccccccHHHHHHHHHHHHhh-----c--CCCCCCCCCeeeeCC-------------CCCCHHHHHHHH
Confidence 68999999999999999999999877766542 3 358999999999995 379999999999
Q ss_pred HHHHHhcCCeeeccCCCCCCHhHHhccCChhhhhhccCCCCCCccceeccc----------cCCCCCc-c----ccCCCc
Q 008464 346 TLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGT----------KGNTRKI-K----VTPPHL 410 (564)
Q Consensus 346 slwa~~~sPLiig~Dl~~~~~~~l~lL~N~eliainqd~~~~~~~~~~~~~----------~~~~~~~-~----N~~~~~ 410 (564)
|||||++||||+|+||+++++++++||+|+||||||||++|.++ +.+... +.+.++. + |++++
T Consensus 288 sLWai~~SPLiiG~DL~~m~~~tl~ILtNkEVIAINQD~lG~qg-~~v~~~~~~~~~~vW~~~L~~g~~aValfN~~~~- 365 (427)
T PLN02229 288 SIWALMKAPLLIGCDVRNMTAETMEILSNKEVIAVNQDPLGVQG-RKIQANGKNGCQQVWAGPLSGDRLVVALWNRCSE- 365 (427)
T ss_pred HHHHHHhCceeecCCcccCCHHHHHHhcCHHHHhhcccccccCc-EEEEecCCCCceEEEEEECCCCCEEEEEEeCCCC-
Confidence 99999999999999999999999999999999999999998555 334321 1134433 3 99998
Q ss_pred cceeecccceecccCC-CCCcccccccccccC-cCceEEEEecCCCCCCCCe
Q 008464 411 SEVAESNTHVLGLTSC-KDPKANSWSIQAHDQ-ELEEICWKGKSGNKIGEPL 460 (564)
Q Consensus 411 ~~~~~~~~~~lGL~~~-~~~~~dlWt~~~~~~-~~g~i~~~~~~~~~~~~~~ 460 (564)
++++++++..|||.+. .++++|||++++++. ..++++++ +++|++.-.
T Consensus 366 ~~~v~v~~~~lGl~~~~~~~VrDLW~~~dlg~~~~~~~~~~--v~~Hg~~l~ 415 (427)
T PLN02229 366 PATITASWDVIGLESSISVSVRDLWKHKDLSENVVGSFGAQ--VDAHDCHMY 415 (427)
T ss_pred CEEEEEEHHHcCCCCCCceEEEECCCCCccCccccceEEEE--ECCCeEEEE
Confidence 9999999999999875 478999999998652 45677776 677755443
No 4
>PLN02808 alpha-galactosidase
Probab=100.00 E-value=3.8e-82 Score=662.77 Aligned_cols=342 Identities=24% Similarity=0.415 Sum_probs=295.6
Q ss_pred CccCCCCCCCCceEeccccccccCCCHHHHHHHHHHH-HHhhccCCceEEEecccccccccCCccccCCCcccccCCCCc
Q 008464 26 SEAVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEII-SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRM 104 (564)
Q Consensus 26 ~~~~~~~~~~pPmGWnSW~~~~~~i~e~~i~~~ad~~-~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~ 104 (564)
....++++++||||||||+.|+++|||++|+++|+.| +.||+++||+||+|||||+... ||++|+|
T Consensus 22 ~~~~ngla~tPpmGWnsW~~~~~~i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~-------------rd~~G~~ 88 (386)
T PLN02808 22 NLLDNGLGLTPQMGWNSWNHFQCNINETLIKQTADAMVSSGLAALGYKYINLDDCWAELK-------------RDSQGNL 88 (386)
T ss_pred hcccCcccCCCcceEEchHHHCCCCCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCC-------------cCCCCCE
Confidence 3457899999999999999999999999999999987 7899999999999999999753 5788999
Q ss_pred eeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccC
Q 008464 105 IPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWM 184 (564)
Q Consensus 105 ~~d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~ 184 (564)
+||++|||+ |||+|++|||++|||||||.++|..+|+.
T Consensus 89 ~~d~~rFP~-----G~~~lad~iH~~GlkfGiy~~~G~~tC~~------------------------------------- 126 (386)
T PLN02808 89 VPKASTFPS-----GIKALADYVHSKGLKLGIYSDAGTLTCSK------------------------------------- 126 (386)
T ss_pred eeChhhcCc-----cHHHHHHHHHHCCCceEEEecCCccccCC-------------------------------------
Confidence 999999998 99999999999999999999999887742
Q ss_pred CCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCCC-hHHHHHHHHHHHhCCCCeEEEcCCCCCCCc-hhhh
Q 008464 185 QHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD-INEISFVSEVLKELDRPIVYSLSPGTGVTP-AMAK 262 (564)
Q Consensus 185 ~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~-~~~y~~m~~al~~~gr~i~~s~s~~~~~~p-~~~~ 262 (564)
.+||+++|+++++++|++|||||||+|+|+.+... .++|.+|++||+++||||+||+|++....| .|+
T Consensus 127 ---------~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~~slc~wg~~~p~~w~- 196 (386)
T PLN02808 127 ---------TMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGRPIFFSLCEWGQEDPATWA- 196 (386)
T ss_pred ---------CCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeEEEecCCCCCCHHHHH-
Confidence 13677889999999999999999999999865443 468999999999999999999998654445 555
Q ss_pred hhcccccEEEEecCCCCChhhHHHHhhhhhhhhhhhhhcccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCHHHHH
Q 008464 263 EVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQR 342 (564)
Q Consensus 263 ~~~~~~n~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~~g~~~~~~lT~~E~r 342 (564)
.+++|+||++.||++.|.++.++++....|+. +. +|++|||||||+||. .+||.+|+|
T Consensus 197 --~~~~n~WR~s~Di~d~W~~v~~~~~~~~~~~~-----~a--gPG~wnDpDML~vGn-------------~glt~~E~r 254 (386)
T PLN02808 197 --GDIGNSWRTTGDIQDNWDSMTSRADQNDRWAS-----YA--RPGGWNDPDMLEVGN-------------GGMTTEEYR 254 (386)
T ss_pred --HhhcCcccccCCcccchhhHHHHHHhhhhhHh-----hc--CCCCCCCCCeeeECC-------------CCCCHHHHH
Confidence 46799999999999999999999987766654 23 358999999999994 379999999
Q ss_pred HHHHHHHHhcCCeeeccCCCCCCHhHHhccCChhhhhhccCCCCCCccceeccc-------cCC-CCCcc----ccCCCc
Q 008464 343 TQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGT-------KGN-TRKIK----VTPPHL 410 (564)
Q Consensus 343 t~~slwa~~~sPLiig~Dl~~~~~~~l~lL~N~eliainqd~~~~~~~~~~~~~-------~~~-~~~~~----N~~~~~ 410 (564)
|||+||||++||||+|+||++|++++++||+||||||||||+++.++ +.|... +.+ +++.+ |++++
T Consensus 255 thfsLWam~~SPLiiG~DL~~~~~~~l~iLtNkevIAINQD~lG~~~-~~v~~~~~~~vW~k~L~~g~~aVal~N~~~~- 332 (386)
T PLN02808 255 SHFSIWALAKAPLLIGCDIRSMDNETFELLSNKEVIAVNQDKLGVQG-KKVKKDGDLEVWAGPLSKKRVAVVLWNRGSS- 332 (386)
T ss_pred HHHHHHHHHhCcceecCCcCcCCHHHHHHhcCHHHHhhcCCccccCc-EEEEecCCeEEEEEECCCCCEEEEEEECCCC-
Confidence 99999999999999999999999999999999999999999988655 445432 123 44433 99998
Q ss_pred cceeecccceecccCC-CCCcccccccccccCcCceEEEEecCCCCCCC
Q 008464 411 SEVAESNTHVLGLTSC-KDPKANSWSIQAHDQELEEICWKGKSGNKIGE 458 (564)
Q Consensus 411 ~~~~~~~~~~lGL~~~-~~~~~dlWt~~~~~~~~g~i~~~~~~~~~~~~ 458 (564)
++++++++..|||... .++++|+|++++.+...++++++ +++|.+.
T Consensus 333 ~~~~~~~~~~lgl~~~~~~~vrDlWs~~~~g~~~~~~~~~--v~pHg~~ 379 (386)
T PLN02808 333 RATITARWSDIGLNSSAVVNARDLWAHSTQSSVKGQLSAL--VESHACK 379 (386)
T ss_pred CEEEEEEHHHhCCCCCCceEEEECCCCCccCcccceEEEE--ECCceEE
Confidence 9999999999999863 58999999999877677888776 6777543
No 5
>PLN02692 alpha-galactosidase
Probab=100.00 E-value=7.2e-82 Score=661.77 Aligned_cols=340 Identities=24% Similarity=0.407 Sum_probs=292.3
Q ss_pred ccCCCCCCCCceEeccccccccCCCHHHHHHHHHHH-HHhhccCCceEEEecccccccccCCccccCCCcccccCCCCce
Q 008464 27 EAVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEII-SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMI 105 (564)
Q Consensus 27 ~~~~~~~~~pPmGWnSW~~~~~~i~e~~i~~~ad~~-~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~ 105 (564)
...++++++||||||||+.|+++|||+.++++||.| +.||+++||+||+|||||+... +|+.|+|+
T Consensus 47 ~~~ngla~tPpmGWnSW~~~~~~i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~-------------rd~~G~~~ 113 (412)
T PLN02692 47 LLANGLGITPPMGWNSWNHFSCKIDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIA-------------RDEKGNLV 113 (412)
T ss_pred cccCcCcCCCcceEEchhhhCcccCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCC-------------CCCCCCee
Confidence 335799999999999999999999999999999965 7899999999999999999753 57889999
Q ss_pred eCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCC
Q 008464 106 PDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQ 185 (564)
Q Consensus 106 ~d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~ 185 (564)
||++|||+ |||+||||||+||||||||.++|..+|+.
T Consensus 114 ~d~~kFP~-----G~k~ladyiH~~GLKfGIy~d~G~~tC~~-------------------------------------- 150 (412)
T PLN02692 114 PKKSTFPS-----GIKALADYVHSKGLKLGIYSDAGYFTCSK-------------------------------------- 150 (412)
T ss_pred eChhhcCC-----cHHHHHHHHHHCCCceEEEecCCccccCC--------------------------------------
Confidence 99999998 99999999999999999999999887742
Q ss_pred CCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCCC-hHHHHHHHHHHHhCCCCeEEEcCCCCCCCc-hhhhh
Q 008464 186 HGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD-INEISFVSEVLKELDRPIVYSLSPGTGVTP-AMAKE 263 (564)
Q Consensus 186 ~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~-~~~y~~m~~al~~~gr~i~~s~s~~~~~~p-~~~~~ 263 (564)
.+||+++|+++++++|++|||||||+|+|+.+... .++|+.|++||+++||||+||+|++....| .|+
T Consensus 151 --------~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~wg~~~p~~w~-- 220 (412)
T PLN02692 151 --------TMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKAGRPIFFSLCEWGDMHPALWG-- 220 (412)
T ss_pred --------CCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHhCCCeEEEecCCCcCChhhhh--
Confidence 13667889999999999999999999999865444 478999999999999999999998665445 344
Q ss_pred hcccccEEEEecCCCCChhhHHHHhhhhhhhhhhhhhcccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCHHHHHH
Q 008464 264 VSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRT 343 (564)
Q Consensus 264 ~~~~~n~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~~g~~~~~~lT~~E~rt 343 (564)
.+++|+|||+.|+++.|.++.++++....|+. +. +|++|||||||+||. .+||.+|+||
T Consensus 221 -~~~~n~WR~s~DI~d~W~sv~~~~~~~~~~~~-----~a--gPG~wnDpDML~VGn-------------~glT~~E~rT 279 (412)
T PLN02692 221 -SKVGNSWRTTNDISDTWDSMISRADMNEVYAE-----LA--RPGGWNDPDMLEVGN-------------GGMTKDEYIV 279 (412)
T ss_pred -hhcCCccccccccccchHhHHHHHHHHHHHhh-----cc--CCCCCCCCCeEeECC-------------CCCCHHHHHH
Confidence 46899999999999999999999887666543 23 458999999999994 3799999999
Q ss_pred HHHHHHHhcCCeeeccCCCCCCHhHHhccCChhhhhhccCCCCCCccceeccc-------cCCCCCc-c----ccCCCcc
Q 008464 344 QMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGT-------KGNTRKI-K----VTPPHLS 411 (564)
Q Consensus 344 ~~slwa~~~sPLiig~Dl~~~~~~~l~lL~N~eliainqd~~~~~~~~~~~~~-------~~~~~~~-~----N~~~~~~ 411 (564)
|||||||++||||+|+||+++++++++||+|+||||||||+++.++ +.+... +.+.++. + |+++. +
T Consensus 280 hfsLWai~~SPLiiG~DL~~~~~~~l~iLtN~evIAiNQD~lG~q~-~~v~~~~~~~vW~k~l~~g~~aVal~N~~~~-~ 357 (412)
T PLN02692 280 HFSIWAISKAPLLLGCDVRNMTKETMDIVANKEVIAVNQDPLGVQA-KKVRMEGDLEIWAGPLSGYRVALLLLNRGPW-R 357 (412)
T ss_pred HHHHHHHHhCcceecCCcccCCHHHHHHhcCHHHhhhccCccccCc-EEEEecCCeEEEEEECCCCCEEEEEEECCCC-C
Confidence 9999999999999999999999999999999999999999998666 444321 2244433 3 99988 9
Q ss_pred ceeecccceecccCC-CCCcccccccccccC-cCceEEEEecCCCCCC
Q 008464 412 EVAESNTHVLGLTSC-KDPKANSWSIQAHDQ-ELEEICWKGKSGNKIG 457 (564)
Q Consensus 412 ~~~~~~~~~lGL~~~-~~~~~dlWt~~~~~~-~~g~i~~~~~~~~~~~ 457 (564)
+++++++..|||... .++++|||+++.++. ..+.++++ +++|++
T Consensus 358 ~~i~~~~~~lgl~~~~~~~vrDLW~~~~~g~~~~~~~~~~--v~~Hg~ 403 (412)
T PLN02692 358 NSITANWDDIGIPANSIVEARDLWEHKTLKQHFVGNLTAT--VDSHAC 403 (412)
T ss_pred EEEEEeHHHhCCCCCCceEEEECCCCCccCccccceEEEE--ECCceE
Confidence 999999999999863 579999999998663 46778777 677754
No 6
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-69 Score=549.13 Aligned_cols=369 Identities=27% Similarity=0.398 Sum_probs=294.7
Q ss_pred HHHHHHHHHHhhh-hccccCccCCCCCCCCceEeccccccccCCC----------HHHHHHHHHHH-HHhhccCCceEEE
Q 008464 8 LSAVCLYLAFLLH-RVSSISEAVPVRASSPPRGWNSYDSFCWTIS----------EEEFLQSAEII-SQRLRPHGYEYVV 75 (564)
Q Consensus 8 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pPmGWnSW~~~~~~i~----------e~~i~~~ad~~-~~gl~~~Gy~~i~ 75 (564)
++++++-++++.. .+.-....+++++++|||||+||+.|.|+|+ |..++++||.| ++|+++.||+||+
T Consensus 4 ~~~~l~~~~~~v~~~~~~~~~l~NGLg~tP~MGw~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~~~vGY~yi~ 83 (414)
T KOG2366|consen 4 ISFLLLNLLSLVMDSVKGRMSLNNGLGRTPQMGWNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGLADVGYEYIN 83 (414)
T ss_pred hHHHHHHHHHHHHHhhhhheeeccccccCCCcccccccceeeecccccCCccchhHHHHHHHHHHHHHhHHHhcCcEEEe
Confidence 4444444444333 3333557789999999999999999999887 99999999988 6899999999999
Q ss_pred ecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccc
Q 008464 76 VDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILD 155 (564)
Q Consensus 76 iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~ 155 (564)
|||||.... ||..|++++|++|||+ |++.+++|+|++|||||||.+.|..+|+..|+
T Consensus 84 iDDCW~e~~-------------Rd~~grLva~~~rFP~-----Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~PG----- 140 (414)
T KOG2366|consen 84 IDDCWSEVT-------------RDSDGRLVADPSRFPS-----GIKALADYVHSKGLKLGIYSDAGNFTCAGYPG----- 140 (414)
T ss_pred chhhhhhhc-------------cCCccccccChhhccc-----chhhhhhchhhcCCceeeeeccCchhhccCCc-----
Confidence 999999864 5789999999999998 99999999999999999999999988865433
Q ss_pred cccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCCC-hHHHHH
Q 008464 156 TLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD-INEISF 234 (564)
Q Consensus 156 ~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~-~~~y~~ 234 (564)
.+.|++.++++|++|||||+|+|.|+...+. +++|..
T Consensus 141 ------------------------------------------S~~~e~~DA~tFA~WgvDylKlD~C~~~~~~~~~~Yp~ 178 (414)
T KOG2366|consen 141 ------------------------------------------SLGHEESDAKTFADWGVDYLKLDGCFNNLITMPEGYPI 178 (414)
T ss_pred ------------------------------------------ccchhhhhhhhhHhhCCcEEeccccccccccccccchh
Confidence 3446667789999999999999999875544 689999
Q ss_pred HHHHHHhCCCCeEEEcCCCC-CC-----CchhhhhhcccccEEEEecCCCCChhhHHHHhhhhhhhhhhhhhcccCCCCC
Q 008464 235 VSEVLKELDRPIVYSLSPGT-GV-----TPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGK 308 (564)
Q Consensus 235 m~~al~~~gr~i~~s~s~~~-~~-----~p~~~~~~~~~~n~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~ 308 (564)
|+++|+++|||||+|+|.+. .+ .|++ +.++.++|+||+.+||.++|.++..+++.. .|-+..+..+. +|+
T Consensus 179 ms~aLN~tGrpi~ySlC~W~~~~~~~~~~pny-~~i~~~~N~WR~~dDI~dtW~Sv~~I~d~~-~~nqd~~~~~a--gPg 254 (414)
T KOG2366|consen 179 MSRALNNTGRPIFYSLCSWPAYHPGLPHHPNY-KNISTICNSWRTTDDIQDTWKSVDSIIDYI-CWNQDRIAPLA--GPG 254 (414)
T ss_pred HHHHHhccCCceEEEeccCcccccCccCCCcc-hhhhhhhccccchhhhhhHHHHHHHHHHHH-hhhhhhhcccc--CCC
Confidence 99999999999999977532 22 2232 356789999999999999999999988732 23222233344 458
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHhccCChhhhhhccCCCCCC
Q 008464 309 SWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNK 388 (564)
Q Consensus 309 ~wnDpDml~~g~~~~~~~~~g~~~~~~lT~~E~rt~~slwa~~~sPLiig~Dl~~~~~~~l~lL~N~eliainqd~~~~~ 388 (564)
+|||||||++|+ .++|.+|+++||++||++++||++|.|++.++++.+++|+|||+|+||||+++-|
T Consensus 255 ~WNDpDmL~iGN-------------~G~s~e~y~~qf~lWai~kAPLlms~Dlr~is~~~~~il~nk~~IaiNQDplgiq 321 (414)
T KOG2366|consen 255 GWNDPDMLEIGN-------------GGMSYEEYKGQFALWAILKAPLLMSNDLRLISKQTKEILQNKEVIAINQDPLGIQ 321 (414)
T ss_pred CCCChhHhhcCC-------------CCccHHHHHHHHHHHHHhhchhhhccchhhcCHHHHHHhcChhheeccCCccchh
Confidence 999999999995 4899999999999999999999999999999999999999999999999999988
Q ss_pred ccceec-cc------cCCCCCcc-----ccCCCc-cceee-cccceecccC-CCCCccccccccc-ccCcCceEEEEecC
Q 008464 389 EFPYII-GT------KGNTRKIK-----VTPPHL-SEVAE-SNTHVLGLTS-CKDPKANSWSIQA-HDQELEEICWKGKS 452 (564)
Q Consensus 389 ~~~~~~-~~------~~~~~~~~-----N~~~~~-~~~~~-~~~~~lGL~~-~~~~~~dlWt~~~-~~~~~g~i~~~~~~ 452 (564)
+.+.+. +. +.+.+..+ |+.... ...++ +.+..+|+.. ..+++.|||++.. ....+++|++.+
T Consensus 322 Gr~i~~e~~~ievw~~pls~~~~Ava~lNr~~~~~~~~It~~~l~~~g~~~~~~~~~~dLw~~~~~~~~~~~~i~~~V-- 399 (414)
T KOG2366|consen 322 GRKIVLEGDSIEVWSGPLSGKSVAVAFLNRRKTGIPARITAASLRELGLTNPASYTAHDLWSGVLGFLPTKDSISAQV-- 399 (414)
T ss_pred heeeeecCCceEEEeeccCCceEEEEEecccCCCCCccccHHHHhhcCCCCCceeEeeehhhccccccccCCeEEEEE--
Confidence 766552 21 12333222 887331 66676 7799999965 5689999999952 223577888884
Q ss_pred CCCCCCCe
Q 008464 453 GNKIGEPL 460 (564)
Q Consensus 453 ~~~~~~~~ 460 (564)
.+|++.-.
T Consensus 400 ~phG~~l~ 407 (414)
T KOG2366|consen 400 NPHGVVLF 407 (414)
T ss_pred CCCCcEEE
Confidence 45544433
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=100.00 E-value=1.3e-32 Score=292.08 Aligned_cols=294 Identities=21% Similarity=0.378 Sum_probs=181.9
Q ss_pred hhhhccccCccC-CCCCCCCceEeccccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcc
Q 008464 18 LLHRVSSISEAV-PVRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFD 96 (564)
Q Consensus 18 ~~~~~~~~~~~~-~~~~~~pPmGWnSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~ 96 (564)
-+|+..+..... ....++||||||||+++++++||+.+++.|+.+ +++||++|+|||||+..+. +
T Consensus 22 ~~h~~~r~~~~~~~~~~~~~pv~~nsW~~~~~d~~e~~i~~~a~~~----~~~G~e~fviDDGW~~~r~----------~ 87 (394)
T PF02065_consen 22 RFHRFVRRHLLRPPWRDKPPPVGWNSWEAYYFDITEEKILELADAA----AELGYEYFVIDDGWFGGRD----------D 87 (394)
T ss_dssp HHHHHHHHHTSTTTTTTSS--EEEESHHHHTTG--HHHHHHHHHHH----HHHT-SEEEE-SSSBCTES----------T
T ss_pred HHHHHHHHhcCCCccCCCCCceEEEcccccCcCCCHHHHHHHHHHH----HHhCCEEEEEcCccccccC----------C
Confidence 456665555333 345789999999999999999999999999975 6789999999999998632 1
Q ss_pred cccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccc
Q 008464 97 VIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGL 176 (564)
Q Consensus 97 ~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~ 176 (564)
..+..|+|++|++|||+ ||++|+++||++|||||||+.|+. +.++|+++.+ +++|..+.-..
T Consensus 88 d~~~~GdW~~~~~kFP~-----Gl~~l~~~i~~~Gmk~GlW~ePe~----v~~~S~l~~~---------hPdw~l~~~~~ 149 (394)
T PF02065_consen 88 DNAGLGDWEPDPKKFPN-----GLKPLADYIHSLGMKFGLWFEPEM----VSPDSDLYRE---------HPDWVLRDPGR 149 (394)
T ss_dssp TTSTTSBECBBTTTSTT-----HHHHHHHHHHHTT-EEEEEEETTE----EESSSCHCCS---------SBGGBTCCTTS
T ss_pred CcccCCceeEChhhhCC-----cHHHHHHHHHHCCCeEEEEecccc----ccchhHHHHh---------CccceeecCCC
Confidence 13467999999999998 999999999999999999999965 4577776643 45665543221
Q ss_pred cccccccCCCCceeecCCcHHHHHHHHHHH-HHHHhhCccEEEecCCCC------CCCC--hHHHH----HHHHHHHhCC
Q 008464 177 KERACAWMQHGFMSVNTKLGAGRAFLRSLY-QQYAEWGVDFVKHDCVFG------DDLD--INEIS----FVSEVLKELD 243 (564)
Q Consensus 177 ~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~-~~~a~wGvdylK~D~~~~------~~~~--~~~y~----~m~~al~~~g 243 (564)
... .....+.||+++|++++|+...+ +.+++|||||||+||+.. .... ..+|. .|.+.|.+..
T Consensus 150 ~~~----~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~ 225 (394)
T PF02065_consen 150 PPT----LGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARF 225 (394)
T ss_dssp E-E----CBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHT
T ss_pred CCc----CcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 111 11245899999999999996655 568999999999999753 1111 12332 3667777777
Q ss_pred CCeEEEcCCC--CCCCchhhhhhcccccEEEEecCCCCChhhHHHHhhhhhhhhhhhhhcccCCCCCCC--CCCCCCccc
Q 008464 244 RPIVYSLSPG--TGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSW--PDLDMLPLG 319 (564)
Q Consensus 244 r~i~~s~s~~--~~~~p~~~~~~~~~~n~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~w--nDpDml~~g 319 (564)
.++++..|.+ .-..+.+. .|.+..-+|+++ +.+.++.-....+..+-. ... +.| .-|.+.
T Consensus 226 P~v~iE~CssGG~R~D~g~l----~~~~~~w~SD~t-da~~R~~iq~g~s~~~p~-~~~-------~~hv~~~p~~~--- 289 (394)
T PF02065_consen 226 PDVLIENCSSGGGRFDPGML----YYTPQSWTSDNT-DALERLRIQYGTSLFYPP-EYM-------GAHVSASPNHQ--- 289 (394)
T ss_dssp TTSEEEE-BTTBTTTSHHHH----CCSSEEESBST--SHHHHHHHHHHHCTTSSG-GGE-------EEEEEHSS-TT---
T ss_pred CCcEEEeccCCCCccccchh----eeccccccCCcc-chHHHhhhhcccccccCH-HHh-------CCeEEeccccc---
Confidence 8999988852 22334332 467777777654 443333322111111000 000 011 111000
Q ss_pred ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHhccCChhhhhhcc
Q 008464 320 WLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINT 382 (564)
Q Consensus 320 ~~~~~~~~~g~~~~~~lT~~E~rt~~slwa~~~sPLiig~Dl~~~~~~~l~lL~N~eliainq 382 (564)
....+.-+.|+++ ||+ +.|.++-|+.++++++++.++ +.|++-+
T Consensus 290 -------------~~r~~~l~~r~~~---a~~-g~~g~e~dl~~ls~~e~~~~~--~~ia~YK 333 (394)
T PF02065_consen 290 -------------TGRTTPLEFRAHV---AMF-GRLGLELDLTKLSEEELAAVK--EQIAFYK 333 (394)
T ss_dssp -------------THHHGGHHHHHHH---HTC-SEEEEESTGCGS-HHHHHHHH--HHHHHHH
T ss_pred -------------cCCcccceechhh---hhc-CCceeccCcccCCHHHHHHHH--HHHHHHH
Confidence 0122334445444 444 899999999999988887663 4444443
No 8
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=2.4e-23 Score=220.26 Aligned_cols=179 Identities=21% Similarity=0.407 Sum_probs=142.2
Q ss_pred ccccCccCCCCCCCCceEeccccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCC
Q 008464 22 VSSISEAVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEW 101 (564)
Q Consensus 22 ~~~~~~~~~~~~~~pPmGWnSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~ 101 (564)
+..+..+.+-..+..|||||||+++|.+++++.++++++. .++.|.+.|+|||||+..+. +...+-
T Consensus 278 v~~~i~~~~~~~kprPi~~nsWea~Yfd~t~e~ile~vk~----akk~gvE~FvlDDGwfg~rn----------dd~~sl 343 (687)
T COG3345 278 VRMEIVPRPRVKKPRPIGWNSWEAYYFDFTEEEILENVKE----AKKFGVELFVLDDGWFGGRN----------DDLKSL 343 (687)
T ss_pred HHhhcCcccccCCCCcceeeceeeeeecCCHHHHHHHHHH----HhhcCeEEEEEccccccccC----------cchhhh
Confidence 3444455566677789999999999999999999999985 57899999999999997532 223467
Q ss_pred CCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccc-
Q 008464 102 GRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERA- 180 (564)
Q Consensus 102 G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~- 180 (564)
|+|..+.+|||+ |+..+++.||++||+||||+.|++ ++.+|.++.. ||+|..+--+.+...
T Consensus 344 GDWlv~seKfPs-----giE~li~~I~e~Gl~fGIWlePem----vs~dSdlfrq---------HPDWvvk~~G~p~~~~ 405 (687)
T COG3345 344 GDWLVNSEKFPS-----GIEELIEAIAENGLIFGIWLEPEM----VSEDSDLFRQ---------HPDWVVKVNGYPLMAG 405 (687)
T ss_pred hceecchhhccc-----cHHHHHHHHHHcCCccceeecchh----cccchHHHhh---------CCCeEEecCCcccccc
Confidence 999999999998 999999999999999999999986 4566766644 677777644443211
Q ss_pred ----cccCCCCceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCCCCCCChHHH
Q 008464 181 ----CAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEI 232 (564)
Q Consensus 181 ----~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~~~~~y 232 (564)
..|.....+.+|.+++.++.++..++++++ +||.+++|+|+.+...+..++|
T Consensus 406 Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdmnr~l~klg~~~~~~l~qqry 462 (687)
T COG3345 406 RNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDMNRELFKLGFLFWGALPQQRY 462 (687)
T ss_pred ccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHhCcceeecCCCCCccccchHH
Confidence 124444567888888899999999999999 9999999999998766655554
No 9
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.78 E-value=2.7e-17 Score=170.58 Aligned_cols=202 Identities=16% Similarity=0.242 Sum_probs=137.2
Q ss_pred CCCceEeccccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCC
Q 008464 34 SSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPS 113 (564)
Q Consensus 34 ~~pPmGWnSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~ 113 (564)
.++|+ ||||++++..+||++|+++++.+++. ...+++|.||++|+. ..|.++.|++|||+
T Consensus 12 ~~~p~-W~~W~~~~~~~s~~~v~~~~~~~~~~--~iP~d~i~iD~~w~~-----------------~~g~f~~d~~~FPd 71 (303)
T cd06592 12 FRSPI-WSTWARYKADINQETVLNYAQEIIDN--GFPNGQIEIDDNWET-----------------CYGDFDFDPTKFPD 71 (303)
T ss_pred hCCCc-cCChhhhccCcCHHHHHHHHHHHHHc--CCCCCeEEeCCCccc-----------------cCCccccChhhCCC
Confidence 67888 99999999999999999999977441 234789999999985 35889999999995
Q ss_pred CCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccc-cccccccCCCCceeec
Q 008464 114 SRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGL-KERACAWMQHGFMSVN 192 (564)
Q Consensus 114 ~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~-~~~~~~~~~~~~~~lD 192 (564)
++.++++||++|+|++||+.|++.. +++.+.+. ....+..++... ....-.|.+.....+|
T Consensus 72 ------p~~mi~~l~~~G~k~~l~i~P~i~~-----~s~~~~e~-------~~~g~~vk~~~g~~~~~~~~w~g~~~~~D 133 (303)
T cd06592 72 ------PKGMIDQLHDLGFRVTLWVHPFINT-----DSENFREA-------VEKGYLVSEPSGDIPALTRWWNGTAAVLD 133 (303)
T ss_pred ------HHHHHHHHHHCCCeEEEEECCeeCC-----CCHHHHhh-------hhCCeEEECCCCCCCcccceecCCcceEe
Confidence 9999999999999999999998642 23332210 011233333211 0011123333456899
Q ss_pred CCcHHHHHHHHHHHHHHH-hhCccEEEecCCCCCC-----------CChHHH-HHHHHHHHhCCCCeEEEcCCCCCCCch
Q 008464 193 TKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDD-----------LDINEI-SFVSEVLKELDRPIVYSLSPGTGVTPA 259 (564)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~-----------~~~~~y-~~m~~al~~~gr~i~~s~s~~~~~~p~ 259 (564)
+|+|+|++|+...++.+. ++|||++|+|+.-+.. ..+..| ..+.++..+.+ |++++=|.
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~p~~~~~~~~~~~~n~y~~~~~~~~~~~~-~~~~~Rsg------- 205 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEASYLPQDYVTEDPLLNPDEYTRLYAEMVAEFG-DLIEVRAG------- 205 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCcccCCcccccCCcccCHHHHHHHHHHHHHhhc-cceEEEee-------
Confidence 999999999988887765 9999999999875311 112234 34555555554 67765442
Q ss_pred hhhhhcccccEEEEecCCCCChhhH
Q 008464 260 MAKEVSGLVNMYRITGDDWDTWGDV 284 (564)
Q Consensus 260 ~~~~~~~~~n~~Ris~D~~~~W~~~ 284 (564)
|+ ....++-.| ++|...+|+.+
T Consensus 206 ~~-g~~~~~~~w--~GD~~s~W~~~ 227 (303)
T cd06592 206 WR-SQGLPLFVR--MMDKDSSWGGD 227 (303)
T ss_pred ee-cCCCCeeEE--cCCCCCCCCCC
Confidence 11 111122233 68888899876
No 10
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=99.77 E-value=1.6e-17 Score=184.23 Aligned_cols=299 Identities=14% Similarity=0.142 Sum_probs=176.2
Q ss_pred CCCc-----eEeccccccccCCCHHHHHHHHHHHHHhhccCCceEEEeccccccccc--CCccccC-CCcccccCCCCce
Q 008464 34 SSPP-----RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKV--KGAYVDS-LGFDVIDEWGRMI 105 (564)
Q Consensus 34 ~~pP-----mGWnSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~--~g~~~~~-~~~~~~d~~G~~~ 105 (564)
++.| +|||||++|+.++||+.|++.++.|+++-.+. ++++||||||.... .+..... .+......+-++.
T Consensus 196 K~~P~~ld~~GWCTW~afy~~Vt~~~I~~~l~~l~~~g~p~--~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~f~ 273 (758)
T PLN02355 196 KKMPDMLNWFGWCTWDAFYTNVTAEGVKQGLESLEKGGVTP--KFVIIDDGWQSVGMDPTGIECLADNSANFANRLTHIK 273 (758)
T ss_pred ccCCcccceeeEEehhHhhccCCHHHHHHHHHHHHhCCCCc--cEEEEeccccccccccccccccccccchhhhhhcccc
Confidence 3677 99999999999999999999999987654443 79999999998521 0000000 0000001122445
Q ss_pred eCCCCCCCC-C-------CCCChHHHHHHHHH-cCCeE-EEEeecCccccccCCCCccccccc-CCCcccCCCcc--ccc
Q 008464 106 PDPDRWPSS-R-------GGKGFTEVAKKVHA-MGLKF-GIHVMRGISTQAFNADTPILDTLK-GGAYEDSGRQW--RAK 172 (564)
Q Consensus 106 ~d~~kFP~~-~-------~~~Glk~lad~ih~-~Glk~-Giy~~pg~~~~a~~~~s~i~~~~~-~~~y~~~g~~~--~~~ 172 (564)
+|+ |||.- . ...|||.+++.||+ .|+|. |+|.+-.-.+-.+.|+.+...... -..|+..-+.. ...
T Consensus 274 ~n~-KF~~~~~~~~~~~~~~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~~~~~ 352 (758)
T PLN02355 274 ENH-KFQKNGKEGHRVDDPALGLGHIVTEIKEKHSLKYVYVWHAITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQSNEP 352 (758)
T ss_pred ccc-cccccccccccccCCCCcHHHHHHHHHhhcCCcEEEEeeeecceecCcCCCCcccccccccccccccCCcccccCc
Confidence 664 88830 0 01499999999997 67864 999876545555666655432111 01122110100 001
Q ss_pred cccccccccccCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCC-----CCC-Ch-HH----HHHHHHHHHh
Q 008464 173 DIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG-----DDL-DI-NE----ISFVSEVLKE 241 (564)
Q Consensus 173 Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~~-~~----y~~m~~al~~ 241 (564)
|+.... -.+++...+|| ..+..|++.+...+++-|||+||+|...- ..+ .+ +- +.++...+.+
T Consensus 353 ~~a~d~----i~~~G~glv~P--e~~~~FY~~~hsyL~s~GVDgVKVD~Q~~le~l~~g~ggrv~la~~y~~ALe~S~~r 426 (758)
T PLN02355 353 CDALES----ITTNGLGLVNP--EKVFSFYNELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASIAR 426 (758)
T ss_pred chhhhh----cccCceeccCH--HHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 110000 00123333443 35788999999999999999999995321 111 11 11 2344443333
Q ss_pred -C-CCCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHH--HhhhhhhhhhhhhhcccCCCCCCCCCCCCCc
Q 008464 242 -L-DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAA--HFNVSRDFSAANMIGAKGLQGKSWPDLDMLP 317 (564)
Q Consensus 242 -~-gr~i~~s~s~~~~~~p~~~~~~~~~~n~~Ris~D~~~~W~~~~~--~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~ 317 (564)
. ++-++-++|...+ .+.. .+.....|+|+|-++.+..... ++..+++ .++. +...|+|-||+.
T Consensus 427 ~F~~ngvI~CMs~~~d---~i~~--~k~sav~R~SDDF~P~dP~sh~~Hi~~~AyN----SLll----g~~v~PDWDMF~ 493 (758)
T PLN02355 427 NFPDNGIISCMSHNTD---GLYS--AKRTAVIRASDDFWPRDPASHTIHIASVAYN----TIFL----GEFMQPDWDMFH 493 (758)
T ss_pred hCCCCceEEecccCch---hhcc--cccceeeeeccccccCCCccCchhhhhhhhh----hhhh----ccccccCcccce
Confidence 2 5566666664221 1211 2467899999999987764332 2222211 1221 235789999997
Q ss_pred ccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHhcc
Q 008464 318 LGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLI 372 (564)
Q Consensus 318 ~g~~~~~~~~~g~~~~~~lT~~E~rt~~slwa~~~sPLiig~Dl~~~~~~~l~lL 372 (564)
-- ..-.+.|..+-|++|+|++++|-+-+-+-+-|+=|
T Consensus 494 S~------------------hp~A~~HAaaRAisGGPIYvSD~PG~hdf~LLk~L 530 (758)
T PLN02355 494 SL------------------HPMAEYHAAARAVGGCAIYVSDKPGQHDFNLLKKL 530 (758)
T ss_pred ec------------------CccHHHHHHHHhccCCcEEEecCCCCccHHHHHhh
Confidence 33 13357899999999999999999888776666544
No 11
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=99.76 E-value=4.4e-17 Score=180.37 Aligned_cols=308 Identities=15% Similarity=0.116 Sum_probs=182.2
Q ss_pred hccccCccCCC-CCCCCc-----eEeccccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccc---
Q 008464 21 RVSSISEAVPV-RASSPP-----RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVD--- 91 (564)
Q Consensus 21 ~~~~~~~~~~~-~~~~pP-----mGWnSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~--- 91 (564)
++.++...-+. ..++.| +|||||++|+.++||+.|++.++.|+++-.+. .+++||||||.-...++...
T Consensus 178 av~~h~~tf~~re~K~~p~~~D~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip~--~~viIDDGwQsi~~~~~~~~~~~ 255 (775)
T PLN02219 178 AVEKHMQTFLHREKKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTPP--KFLIIDDGWQQIENKEKDENCVV 255 (775)
T ss_pred HHHHhcccccccccccCccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCCc--eEEEEccCccccccccccccccc
Confidence 34555554444 467788 99999999999999999999999987654443 79999999998532210000
Q ss_pred CCCcccccCCCCceeCCC--------CCCCCCCCCChHHHHHHHHH-cCCeE-EEEeecCccccccCCCCccccccc-CC
Q 008464 92 SLGFDVIDEWGRMIPDPD--------RWPSSRGGKGFTEVAKKVHA-MGLKF-GIHVMRGISTQAFNADTPILDTLK-GG 160 (564)
Q Consensus 92 ~~~~~~~d~~G~~~~d~~--------kFP~~~~~~Glk~lad~ih~-~Glk~-Giy~~pg~~~~a~~~~s~i~~~~~-~~ 160 (564)
..|.......-++..|+. .||. |||.+++.||+ .|+|- |+|.+-.-.+-.+.|+.+.+.... -.
T Consensus 256 ~~g~qf~~rL~~f~en~KF~~~~~~~~fp~-----Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~ 330 (775)
T PLN02219 256 QEGAQFATRLTGIKENAKFQKNDQKNEQVS-----GLKHVVDDAKQRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSAL 330 (775)
T ss_pred cccchhhhhhccccccccccccccccCCCC-----cHHHHHHHHHhccCCcEEEEeeeccceecCcCCCCcccccccccc
Confidence 000000001223444421 4776 99999999996 67864 999876545555666655442111 01
Q ss_pred CcccCCCcc--ccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCC-----CCC-C-hHH
Q 008464 161 AYEDSGRQW--RAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG-----DDL-D-INE 231 (564)
Q Consensus 161 ~y~~~g~~~--~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~-~~~ 231 (564)
.|+..-+.- ...|+... .-...+...||| +.+..||+.+.+.+++-|||+||+|...- ..+ . .+-
T Consensus 331 ~~p~~spg~~~~~pd~a~d----~l~~~G~glV~P--~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggrv~l 404 (775)
T PLN02219 331 AYPVQSPGVLGNQPDIVMD----SLSVHGLGLVNP--KKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSL 404 (775)
T ss_pred cccccCCCccccCcchhhh----hhhhCCccccCH--HHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhccCCcHHHH
Confidence 122100000 00000000 000123345665 46889999999999999999999995321 111 1 122
Q ss_pred HHHHHHHHHhC------CCCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHH--Hhhhhhhhhhhhhhccc
Q 008464 232 ISFVSEVLKEL------DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAA--HFNVSRDFSAANMIGAK 303 (564)
Q Consensus 232 y~~m~~al~~~------gr~i~~s~s~~~~~~p~~~~~~~~~~n~~Ris~D~~~~W~~~~~--~~~~~~~~~~~~~~~~~ 303 (564)
.++..+||+++ ++-++-++|...+ .+.. .+.....|.|+|-++.+..... ++..++ +.++.
T Consensus 405 a~~y~~ALe~S~~r~F~~ng~I~CMsh~~d---~i~~--~k~sav~R~SDDF~P~dP~sh~~Hi~~nAy----NSLll-- 473 (775)
T PLN02219 405 TRSYQQALEASIARNFTDNGCISCMCHNTD---GLYS--AKQTAVVRASDDFYPRDPASHTIHISSVAY----NTLFL-- 473 (775)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEecccCch---hhhc--ccccceeecccccccCCCccCcchhhhhhh----hhHHh--
Confidence 23344444332 4557766664211 1221 3467889999999887654322 222111 11221
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHhcc
Q 008464 304 GLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLI 372 (564)
Q Consensus 304 g~~~~~wnDpDml~~g~~~~~~~~~g~~~~~~lT~~E~rt~~slwa~~~sPLiig~Dl~~~~~~~l~lL 372 (564)
+...|+|-||+.-- ..-.+.|..+-|++|+|++++|-+-+-+-+-|+=|
T Consensus 474 --g~~v~PDWDMFqS~------------------Hp~A~~HAaaRAiSGGPIYvSD~PG~Hdf~LLk~L 522 (775)
T PLN02219 474 --GEFMQPDWDMFHSL------------------HPAAEYHGAARAVGGCAIYVSDKPGNHNFDLLRKL 522 (775)
T ss_pred --ccccccCchhceec------------------CccHHHHHHHHhhcCCcEEEecCCCCccHHHHHHh
Confidence 23578999999733 12348899999999999999999888776666544
No 12
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=99.74 E-value=1.1e-16 Score=177.04 Aligned_cols=295 Identities=15% Similarity=0.143 Sum_probs=175.2
Q ss_pred eEeccccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccc--CCCcccccCCCCceeCCCCCCCCC
Q 008464 38 RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVD--SLGFDVIDEWGRMIPDPDRWPSSR 115 (564)
Q Consensus 38 mGWnSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~--~~~~~~~d~~G~~~~d~~kFP~~~ 115 (564)
+|||||++|+.++||+.|++.++.|+++-.+. ++++||||||.....++... ..+.......-++..+ +|||...
T Consensus 204 fGWCTWdafy~dVt~~~I~~~l~~l~~~g~p~--~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~~ 280 (750)
T PLN02684 204 FGWCTWDAFYQEVTQEGVEAGLKSLAAGGTPP--KFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKKD 280 (750)
T ss_pred eeEEEhhHhhccCCHHHHHHHHHHHHhCCCCc--eEEEEecccccccccccccccccccchhhhhhccCccc-ccccccc
Confidence 79999999999999999999999987654443 79999999998542211000 0000000012234455 7887422
Q ss_pred CC-CChHHHHHHHH-HcCCeE-EEEeecCccccccCCCCcccccccC-CCcccC--CCccccccccccccccccCCCCce
Q 008464 116 GG-KGFTEVAKKVH-AMGLKF-GIHVMRGISTQAFNADTPILDTLKG-GAYEDS--GRQWRAKDIGLKERACAWMQHGFM 189 (564)
Q Consensus 116 ~~-~Glk~lad~ih-~~Glk~-Giy~~pg~~~~a~~~~s~i~~~~~~-~~y~~~--g~~~~~~Di~~~~~~~~~~~~~~~ 189 (564)
.. .|||.+++.|| +.|+|- |+|.+-.-.+-.+.|+.+...+... ..|+.. |-.....|+..... ..++..
T Consensus 281 ~p~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~l----~~~g~g 356 (750)
T PLN02684 281 DPNVGIKNIVNIAKEKHGLKYVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDVM----TLQGLG 356 (750)
T ss_pred CCCccHHHHHHHHHhhcCCcEEEEEeeecccccccCCCCcchhhccccccccccCccccccCcccccccc----ccCccc
Confidence 11 49999999998 568864 9998765556666677665532210 122221 10011111110000 001233
Q ss_pred eecCCcHHHHHHHHHHHHHHHhhCccEEEecCCC-----CCCC-C-hHHHHHHHHHHHh-----C-CCCeEEEcCCCCCC
Q 008464 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF-----GDDL-D-INEISFVSEVLKE-----L-DRPIVYSLSPGTGV 256 (564)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~-----~~~~-~-~~~y~~m~~al~~-----~-gr~i~~s~s~~~~~ 256 (564)
.++| ..+..|++.+...+++-|||+||+|... ...+ . .+-.++..+||++ . ++-++-++|....
T Consensus 357 lv~P--~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~~~~ggrv~l~~ay~~ALe~S~~r~F~~ngvI~CMs~~~d- 433 (750)
T PLN02684 357 LVNP--KKVYKFYNELHSYLADAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHNTD- 433 (750)
T ss_pred ccCH--HHHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhhcccCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecccCch-
Confidence 4554 4578899999999999999999999643 1111 1 1212333444443 2 3446656654221
Q ss_pred CchhhhhhcccccEEEEecCCCCChhhHHH--HhhhhhhhhhhhhhcccCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 008464 257 TPAMAKEVSGLVNMYRITGDDWDTWGDVAA--HFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTC 334 (564)
Q Consensus 257 ~p~~~~~~~~~~n~~Ris~D~~~~W~~~~~--~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~~g~~~~~ 334 (564)
.... .+.....|.|+|-++.+..... ++..+++ .++. +...|+|-||+.--.
T Consensus 434 --~i~~--sk~sav~R~SDDF~p~dP~sh~~Hi~~~AyN----SLll----g~~v~PDWDMFqS~h-------------- 487 (750)
T PLN02684 434 --ALYC--SKQTAVVRASDDFYPRDPVSHTIHIAAVAYN----SVFL----GEFMQPDWDMFHSLH-------------- 487 (750)
T ss_pred --hhhc--ccccceeeeccccccCCCccchhhhhhhhhh----hhhh----ccccccCcccceecC--------------
Confidence 1111 2467899999999887654322 2222211 1221 235789999996331
Q ss_pred CCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHhcc
Q 008464 335 NLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLI 372 (564)
Q Consensus 335 ~lT~~E~rt~~slwa~~~sPLiig~Dl~~~~~~~l~lL 372 (564)
.-.+.|..+-|++|+|++++|.+-+-+-+-|+=|
T Consensus 488 ----p~A~~HAaaRAisGGPIYvSD~PG~Hdf~LLk~L 521 (750)
T PLN02684 488 ----PAAEYHASARAISGGPLYVSDAPGKHNFELLKKL 521 (750)
T ss_pred ----ccHHHHHHHHhhcCCceEEecCCCCccHHHHHhh
Confidence 2348899999999999999998888776666544
No 13
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=99.71 E-value=4.8e-16 Score=173.62 Aligned_cols=302 Identities=16% Similarity=0.220 Sum_probs=173.1
Q ss_pred eEeccccccccCCCHHHHHHHHHHHHH-hhccCCceEEEecccccccccCCccc--cC-------CCcc----cccCCCC
Q 008464 38 RGWNSYDSFCWTISEEEFLQSAEIISQ-RLRPHGYEYVVVDYLWYRRKVKGAYV--DS-------LGFD----VIDEWGR 103 (564)
Q Consensus 38 mGWnSW~~~~~~i~e~~i~~~ad~~~~-gl~~~Gy~~i~iDdgW~~~~~~g~~~--~~-------~~~~----~~d~~G~ 103 (564)
+|||||++|+.++|++.|++.++.|++ |.. -.+++||||||.-...+... +. ..+. .+.++.+
T Consensus 197 lGwCTWdaf~~~v~~~~i~~~l~~L~~~gi~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~k 273 (747)
T PF05691_consen 197 LGWCTWDAFYQDVTEEGILEGLKSLEEGGIP---PRFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSK 273 (747)
T ss_pred hccccHHHhccccCHHHHHHHHHHHHhCCCC---ceEEEEecchhcccccCcccccccccccccccccchhhhhhhhhhh
Confidence 799999999999999999999987754 343 35999999999864433210 00 0000 0111111
Q ss_pred ceeC-----CCCCCCCCCCCChHHHHHHHHHc--CCe-EEEEeecCccccccCCCCcccccccCCCcccC--CCcccccc
Q 008464 104 MIPD-----PDRWPSSRGGKGFTEVAKKVHAM--GLK-FGIHVMRGISTQAFNADTPILDTLKGGAYEDS--GRQWRAKD 173 (564)
Q Consensus 104 ~~~d-----~~kFP~~~~~~Glk~lad~ih~~--Glk-~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~--g~~~~~~D 173 (564)
+..+ +++||+ |||.++++||++ |+| +|+|.+-.=.+-.+.|+.+..-.. -..|+.. |-.-...|
T Consensus 274 F~~~~~~~~~~~~~~-----GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~-k~~~~~~spg~~~~~~d 347 (747)
T PF05691_consen 274 FRAYKSGKSPEAFPS-----GLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNY-KLVYPKLSPGLQGNMPD 347 (747)
T ss_pred hhhccCCCcccCCcc-----cHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCcccccc-ceeecccCCcccccCcc
Confidence 1111 235776 999999999998 785 599977533344455544321000 0001100 00000111
Q ss_pred ccccccccccCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCC-----CCC-Ch-H---HH-HHHHHHHHh-
Q 008464 174 IGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG-----DDL-DI-N---EI-SFVSEVLKE- 241 (564)
Q Consensus 174 i~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~~-~---~y-~~m~~al~~- 241 (564)
+..... ...+...++| ..+..|++.+++.+++-|||+||+|.... ..+ .. + .| ++|..++.+
T Consensus 348 ~~~d~~----~~~g~glv~p--~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~S~~r~ 421 (747)
T PF05691_consen 348 LAVDSI----VKGGLGLVDP--EDAFRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEASVARH 421 (747)
T ss_pred cccccc----ccCcccccCH--HHHHHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHh
Confidence 100000 0012233443 25788999999999999999999996431 111 11 1 22 345544433
Q ss_pred C-CCCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhH----------HHHhhhhhhhhhhhhhcccCCCCCCC
Q 008464 242 L-DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDV----------AAHFNVSRDFSAANMIGAKGLQGKSW 310 (564)
Q Consensus 242 ~-gr~i~~s~s~~~~~~p~~~~~~~~~~n~~Ris~D~~~~W~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~w 310 (564)
. ++.++-++|.... .+... .+.....|+|+|-++.+... ..++..+++ .++. +...|
T Consensus 422 F~~~~vI~CMsh~~~---~l~~~-~~~~av~R~SDDF~P~~p~s~p~g~~w~h~~Hi~~nAyN----sL~~----g~~~~ 489 (747)
T PF05691_consen 422 FSGNGVINCMSHNPD---NLYHS-TKQSAVVRNSDDFFPRDPASDPNGVFWLHTWHIAHNAYN----SLLL----GQFVW 489 (747)
T ss_pred CCCCCeEEecCCCcc---chhcc-cccccceeccccccCCCCCCCccccchhhHHHHHHHHHH----HHHH----HhhcC
Confidence 3 4567777764221 11111 23457899999998765433 222222111 1221 12478
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHh--ccCChhhhhhccCC
Q 008464 311 PDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYS--LITNPTVLEINTFS 384 (564)
Q Consensus 311 nDpDml~~g~~~~~~~~~g~~~~~~lT~~E~rt~~slwa~~~sPLiig~Dl~~~~~~~l~--lL~N~eliainqd~ 384 (564)
+|-||+.--. ...+.|..+-||+|+|++|+|.+-+.+-+-|+ +|.+-.||+....+
T Consensus 490 PDwDMF~S~h------------------~~A~~HAaaRaiSGGPVYiSD~pG~hd~~LLk~LvlpDG~ilR~~~pg 547 (747)
T PF05691_consen 490 PDWDMFQSSH------------------PAAEFHAAARAISGGPVYISDKPGKHDFDLLKKLVLPDGSILRADHPG 547 (747)
T ss_pred CCcccccccC------------------ccHHHHHHHHhhcCCCEEEeeCCCCCCHHHHHHhhCCCCceeccccCC
Confidence 9999997331 24678999999999999999999887766655 34555566555544
No 14
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=99.63 E-value=1e-14 Score=161.82 Aligned_cols=288 Identities=14% Similarity=0.157 Sum_probs=165.2
Q ss_pred eEeccccccccCCCHHHHHHHHHHHHH-hhccCCceEEEecccccccccCCccc-cCCCccccc--------CCCCceeC
Q 008464 38 RGWNSYDSFCWTISEEEFLQSAEIISQ-RLRPHGYEYVVVDYLWYRRKVKGAYV-DSLGFDVID--------EWGRMIPD 107 (564)
Q Consensus 38 mGWnSW~~~~~~i~e~~i~~~ad~~~~-gl~~~Gy~~i~iDdgW~~~~~~g~~~-~~~~~~~~d--------~~G~~~~d 107 (564)
+|||||++|+.++||+.|++.++.|++ |..+ .+++||||||.-...++.. +..+ ..+. ..-++..|
T Consensus 215 fGWCTWdAfy~~Vt~egI~~gl~~L~~~Gip~---~~vIIDDGWQsi~~d~~~~~~~~~-~~~~~~g~q~~~rL~~f~en 290 (777)
T PLN02711 215 FGWCTWDAFYLTVHPQGVWEGVKGLVDGGCPP---GLVLIDDGWQSICHDEDPISDQEG-MNRTVAGEQMPCRLLKFEEN 290 (777)
T ss_pred ceEEehhHhcccCCHHHHHHHHHHHHhCCCCc---cEEEEcCCcccccccCcccccccc-cccccccchhhhhhcccccc
Confidence 799999999999999999999998754 3443 6999999999742111000 0000 0000 11123344
Q ss_pred ---------CCCCCCCCCCCChHHHHHHHHHc--CCe-EEEEeecCccccccCCCCcccccccCCCcccC--CCcccccc
Q 008464 108 ---------PDRWPSSRGGKGFTEVAKKVHAM--GLK-FGIHVMRGISTQAFNADTPILDTLKGGAYEDS--GRQWRAKD 173 (564)
Q Consensus 108 ---------~~kFP~~~~~~Glk~lad~ih~~--Glk-~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~--g~~~~~~D 173 (564)
+.+||. |||.+++.||++ |+| +|+|.+-.-.+-.+.|+.+.+... -..|+.. |-.-+.+|
T Consensus 291 ~KF~~~~~~~~~~p~-----Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~-~~~~p~~spg~~~~~~d 364 (777)
T PLN02711 291 YKFRDYVSPKSLSNK-----GMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPES-KVVAPKLSPGLKMTMED 364 (777)
T ss_pred ccccccccccCCCCC-----cHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccc-eeeccccCccccccccc
Confidence 334564 999999999995 675 499987654555556665443110 0111110 10001111
Q ss_pred ccccccccccCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCC-----CCCC-Ch-HH----HHHHHHHHHh-
Q 008464 174 IGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF-----GDDL-DI-NE----ISFVSEVLKE- 241 (564)
Q Consensus 174 i~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~-----~~~~-~~-~~----y~~m~~al~~- 241 (564)
+..-.. ..++...+|| ..+..|++.+...+++-|||+||+|... ...+ .. +- +.++...+.+
T Consensus 365 ~~~d~~----~~~g~glv~P--e~~~~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~~r~ 438 (777)
T PLN02711 365 LAVDKI----VNNGVGLVPP--ELAYQMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASVRKH 438 (777)
T ss_pred cccccc----ccCcccccCH--HHHHHHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHh
Confidence 111000 0122334555 4578899999999999999999999532 1122 12 11 2344444444
Q ss_pred -CCCCeEEEcCCCCCCCch-hhhhhcccccEEEEecCCCCC----------hhhHHHHhhhhhhhhhhhhhcccCCCCCC
Q 008464 242 -LDRPIVYSLSPGTGVTPA-MAKEVSGLVNMYRITGDDWDT----------WGDVAAHFNVSRDFSAANMIGAKGLQGKS 309 (564)
Q Consensus 242 -~gr~i~~s~s~~~~~~p~-~~~~~~~~~n~~Ris~D~~~~----------W~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 309 (564)
.++-++-++|.. +. +.-. .+.....|+++|-++. |-.-..++..++ +.++. +...
T Consensus 439 F~~ng~I~CMs~~----~d~~~~~-tk~~av~R~SDDF~p~dP~sh~~g~~W~~~~Hi~~~Ay----NSLll----g~~v 505 (777)
T PLN02711 439 FNGNGVIASMEHC----NDFMFLG-TEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAY----NSLWM----GNFI 505 (777)
T ss_pred CCCCCeEeecccC----chhhhcc-CcccceeeecccccCCCCccccccccccccceeeeehh----hhhhh----cccc
Confidence 345566666531 11 1100 2345689999998743 311111221111 11221 2357
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHhcc
Q 008464 310 WPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLI 372 (564)
Q Consensus 310 wnDpDml~~g~~~~~~~~~g~~~~~~lT~~E~rt~~slwa~~~sPLiig~Dl~~~~~~~l~lL 372 (564)
|+|-||+.-- ....+.|.++-|++|+|++++|-+-+-+-+-|+=|
T Consensus 506 ~PDWDMF~S~------------------Hp~A~~HAaaRAisGGPIYVSD~pG~Hdf~LLk~L 550 (777)
T PLN02711 506 HPDWDMFQST------------------HPCAEFHAASRAISGGPIYVSDSVGKHNFPLLKRL 550 (777)
T ss_pred cCCchhhhcc------------------CchHHHHHHHHhhcCCCEEEecCCCCccHHHHHhh
Confidence 8999999633 23568899999999999999999987766655533
No 15
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=99.58 E-value=6.9e-14 Score=145.47 Aligned_cols=196 Identities=19% Similarity=0.255 Sum_probs=130.9
Q ss_pred CCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHH
Q 008464 49 TISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVH 128 (564)
Q Consensus 49 ~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih 128 (564)
..+++++++.++.+++. ..-++.|.||++|+.. ...|.+..|++|||+ ++.|++.||
T Consensus 20 y~~~~~v~~~~~~~~~~--~iP~d~~~lD~~w~~~---------------~~~~~f~~d~~~FPd------~~~~i~~l~ 76 (308)
T cd06593 20 YYDEEEVNEFADGMRER--NLPCDVIHLDCFWMKE---------------FQWCDFEFDPDRFPD------PEGMLSRLK 76 (308)
T ss_pred CCCHHHHHHHHHHHHHc--CCCeeEEEEecccccC---------------CcceeeEECcccCCC------HHHHHHHHH
Confidence 38999999998876431 2226899999999953 124689999999996 999999999
Q ss_pred HcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHH
Q 008464 129 AMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ 208 (564)
Q Consensus 129 ~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~ 208 (564)
++|+|+++|+.|++. .+++++.+.. -.+|..++.........+.+.....+|+|+|++++|+.+.++.
T Consensus 77 ~~G~~~~~~~~P~i~-----~~~~~~~e~~-------~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~ 144 (308)
T cd06593 77 EKGFKVCLWINPYIA-----QKSPLFKEAA-------EKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKP 144 (308)
T ss_pred HCCCeEEEEecCCCC-----CCchhHHHHH-------HCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHH
Confidence 999999999999863 2344332210 0123333322221122233444578999999999999988999
Q ss_pred HHhhCccEEEecCCCC---C-----C---CCh-HHH-----HHHHHHHHhC-C--CCeEEEcCCCCCCCchhhhhhcccc
Q 008464 209 YAEWGVDFVKHDCVFG---D-----D---LDI-NEI-----SFVSEVLKEL-D--RPIVYSLSPGTGVTPAMAKEVSGLV 268 (564)
Q Consensus 209 ~a~wGvdylK~D~~~~---~-----~---~~~-~~y-----~~m~~al~~~-g--r~i~~s~s~~~~~~p~~~~~~~~~~ 268 (564)
+.++|||++|+|++-. + . .+. ..| +++.+++++. + ||++++=+... ....|+
T Consensus 145 ~~~~Gid~~~~D~~e~~p~~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~--------Gsqry~ 216 (308)
T cd06593 145 LLDMGVDCFKTDFGERIPTDVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWA--------GSQKYP 216 (308)
T ss_pred HHHhCCcEEecCCCCCCCccccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCcc--------ccccCC
Confidence 9999999999998742 1 1 111 112 3455555543 3 58888755311 012355
Q ss_pred cEEEEecCCCCChhhHHHHhh
Q 008464 269 NMYRITGDDWDTWGDVAAHFN 289 (564)
Q Consensus 269 n~~Ris~D~~~~W~~~~~~~~ 289 (564)
-.| ++|...+|..+...+.
T Consensus 217 ~~w--~GD~~s~w~~L~~~i~ 235 (308)
T cd06593 217 VHW--GGDCESTFEGMAESLR 235 (308)
T ss_pred CEE--CCCcccCHHHHHHHHH
Confidence 455 8999999988776554
No 16
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=99.40 E-value=1.7e-11 Score=136.27 Aligned_cols=215 Identities=16% Similarity=0.143 Sum_probs=116.8
Q ss_pred CChHHHHHHHHHc--CCe-EEEEeecCccccccCCCCcccccccCCCcccC--CCccccccccccccccccCCCCceeec
Q 008464 118 KGFTEVAKKVHAM--GLK-FGIHVMRGISTQAFNADTPILDTLKGGAYEDS--GRQWRAKDIGLKERACAWMQHGFMSVN 192 (564)
Q Consensus 118 ~Glk~lad~ih~~--Glk-~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~--g~~~~~~Di~~~~~~~~~~~~~~~~lD 192 (564)
.|||.+++.||++ |+| .++|.+-.=.+..+.|+.+-+.+. ..|+.. |-.-+..|+..-.. ..++...+|
T Consensus 390 ~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k--~~~p~~spg~~~~~~d~a~d~i----~~~G~glv~ 463 (865)
T PLN02982 390 SGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAK--VVPARLSPGLDGTMNDLAVDKI----VEGGIGLVH 463 (865)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcce--EEecccCccccccCcchhhhhe----ecCceeccC
Confidence 4999999999885 454 588876543444444543211110 011110 00001111110000 012444555
Q ss_pred CCcHHHHHHHHHHHHHHHhhCccEEEecCCC-----CCCC-Ch-H----HHHHHHHHHHh-C-CCCeEEEcCCCCCCCch
Q 008464 193 TKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF-----GDDL-DI-N----EISFVSEVLKE-L-DRPIVYSLSPGTGVTPA 259 (564)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~-----~~~~-~~-~----~y~~m~~al~~-~-gr~i~~s~s~~~~~~p~ 259 (564)
| ..+..||+.+...+++-|||+||+|... ...+ .. + -|.++...+.+ . ++-++-++|.... ..
T Consensus 464 P--~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I~CM~~~~~--~~ 539 (865)
T PLN02982 464 P--SQAGDFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGIIASMQQCND--FF 539 (865)
T ss_pred H--HHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeecccCch--hh
Confidence 4 3467899999999999999999999532 1111 11 1 22444444433 2 3446655553211 01
Q ss_pred hhhhhcccccEEEEecCCCCC------hhhH----HHHhhhhhhhhhhhhhcccCCCCCCCCCCCCCcccccCCCCCCCC
Q 008464 260 MAKEVSGLVNMYRITGDDWDT------WGDV----AAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEG 329 (564)
Q Consensus 260 ~~~~~~~~~n~~Ris~D~~~~------W~~~----~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~~g 329 (564)
+.. .+..-+-|+++|-++. |+.. ..++..+++ .++. +...|+|-||+.--
T Consensus 540 ~~~--tk~sav~R~SDDF~p~dP~shp~g~~wlq~~Hi~~~AyN----SLl~----G~~v~PDWDMFqS~---------- 599 (865)
T PLN02982 540 FLG--TKQISMGRVGDDFWFQDPNGDPMGVYWLQGVHMIHCAYN----SMWM----GQIIQPDWDMFQSD---------- 599 (865)
T ss_pred hcc--CCcceeeeccccccCCCCCcCccccccccceeeeehhhh----hHhh----ccccccCchhcccc----------
Confidence 101 1344678999998743 3221 112222111 1221 23578999999642
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHh
Q 008464 330 PHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYS 370 (564)
Q Consensus 330 ~~~~~~lT~~E~rt~~slwa~~~sPLiig~Dl~~~~~~~l~ 370 (564)
-.-.+.|..+-||+|+|++++|-+-+-+-+-|+
T Consensus 600 --------H~~A~fHAaaRAIsGGPIYvSD~pG~Hdf~lLk 632 (865)
T PLN02982 600 --------HLCAEFHAGSRAICGGPVYVSDSVGGHDFDLLK 632 (865)
T ss_pred --------CchHHHHHHHHhhcCCCEEEeeCCCCccHHHHH
Confidence 244588999999999999999988877666554
No 17
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=99.24 E-value=3.5e-10 Score=123.37 Aligned_cols=215 Identities=18% Similarity=0.195 Sum_probs=125.4
Q ss_pred CCCCCCceEe--ccccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCC
Q 008464 31 VRASSPPRGW--NSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP 108 (564)
Q Consensus 31 ~~~~~pPmGW--nSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~ 108 (564)
|.++.||. | --|..-...-|++++++.++.+.+. ...++.+.||+.|+.. .+.+..|+
T Consensus 20 G~~~~pP~-walG~~~~~~~~~~~~~v~~~i~~~~~~--~iP~d~~~iD~~~~~~-----------------~~~f~~d~ 79 (441)
T PF01055_consen 20 GRPPLPPR-WALGFWQSRWGYYNQDEVREVIDRYRSN--GIPLDVIWIDDDYQDG-----------------YGDFTWDP 79 (441)
T ss_dssp SSS----G-GGGSEEEEESTBTSHHHHHHHHHHHHHT--T--EEEEEE-GGGSBT-----------------TBTT-B-T
T ss_pred CCCCCCch-hhhceEeecCcCCCHHHHHHHHHHHHHc--CCCccceecccccccc-----------------cccccccc
Confidence 56677775 3 2222222335789999999877542 3447899999999862 46889999
Q ss_pred CCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCc
Q 008464 109 DRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGF 188 (564)
Q Consensus 109 ~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~ 188 (564)
++||+ ++.+++.+|++|+|+++|..|++..... ..+.+.+.. ..++..++.........+.++..
T Consensus 80 ~~FPd------~~~~~~~l~~~G~~~~~~~~P~v~~~~~--~~~~~~~~~-------~~~~~v~~~~g~~~~~~~w~g~~ 144 (441)
T PF01055_consen 80 ERFPD------PKQMIDELHDQGIKVVLWVHPFVSNDSP--DYENYDEAK-------EKGYLVKNPDGSPYIGRVWPGKG 144 (441)
T ss_dssp TTTTT------HHHHHHHHHHTT-EEEEEEESEEETTTT--B-HHHHHHH-------HTT-BEBCTTSSB-EEEETTEEE
T ss_pred ccccc------hHHHHHhHhhCCcEEEEEeecccCCCCC--cchhhhhHh-------hcCceeecccCCcccccccCCcc
Confidence 99995 9999999999999999999998754321 011221100 01122222111111112223336
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhh-CccEEEecCCCCCC----------------CCh----HHH-----HHHHHHHHh-
Q 008464 189 MSVNTKLGAGRAFLRSLYQQYAEW-GVDFVKHDCVFGDD----------------LDI----NEI-----SFVSEVLKE- 241 (564)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~w-GvdylK~D~~~~~~----------------~~~----~~y-----~~m~~al~~- 241 (564)
..+|+|||++++|+...++.+.+. |||++|+|+.-... ... ..| ++..+++++
T Consensus 145 ~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~ 224 (441)
T PF01055_consen 145 GFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFDSNNTLPEDAVHHDGYSGYEMHNLYGLLYAKATYEALREI 224 (441)
T ss_dssp EEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSSTTTBSBCTTEECTTECEHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred cccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcccccccccCcccceecCCCCchheeccccccchhhhhhhhhhc
Confidence 789999999999998778877777 99999999843211 000 112 234555544
Q ss_pred --CCCCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHHHhhh
Q 008464 242 --LDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNV 290 (564)
Q Consensus 242 --~gr~i~~s~s~~~~~~p~~~~~~~~~~n~~Ris~D~~~~W~~~~~~~~~ 290 (564)
..||++++-+.. + ....|+.. -++|...+|..+...+..
T Consensus 225 ~~~~r~~~~sRs~~-------~-G~qr~~~~--w~GD~~s~w~~L~~~i~~ 265 (441)
T PF01055_consen 225 DPNKRPFIFSRSGW-------A-GSQRYGGH--WSGDNSSSWDGLRSSIPA 265 (441)
T ss_dssp STTSC-EEEESSEE-------T-TGGGTCEE--EECSSBSSHHHHHHHHHH
T ss_pred cCCCCcceeecccC-------C-CCCcccee--ecccccccHHHHHHHHHH
Confidence 457888877631 1 11345555 478999999988776543
No 18
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=99.22 E-value=7.8e-10 Score=116.71 Aligned_cols=195 Identities=18% Similarity=0.210 Sum_probs=124.7
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008464 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (564)
Q Consensus 50 i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~ 129 (564)
-|++++++.++.+.+. ..-++.|.||..|+. .++.+..|++|||+ .+.|++.+|+
T Consensus 21 ~~~~~v~~~~~~~~~~--~iP~d~i~lD~~~~~-----------------~~~~f~~d~~~fPd------p~~m~~~l~~ 75 (339)
T cd06604 21 YPEEEVREIADEFRER--DIPCDAIYLDIDYMD-----------------GYRVFTWDKERFPD------PKELIKELHE 75 (339)
T ss_pred CCHHHHHHHHHHHHHh--CCCcceEEECchhhC-----------------CCCceeeccccCCC------HHHHHHHHHH
Confidence 4889999999876432 223689999999985 25678999999995 9999999999
Q ss_pred cCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHH
Q 008464 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY 209 (564)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~ 209 (564)
+|+|+-+|+.|++..+ ++++++.+... ..|..++.........+.++....+|+|||++++|+.+..+.+
T Consensus 76 ~g~~~~~~~~P~v~~~---~~~~~~~e~~~-------~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 76 QGFKVVTIIDPGVKVD---PGYDVYEEGLE-------NDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred CCCEEEEEEeCceeCC---CCChHHHHHHH-------CCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHH
Confidence 9999999999987532 22333221100 1122222111111112223334579999999999998888888
Q ss_pred HhhCccEEEecCCCCCC----------------C-----ChH----HH-----HHHHHHHHhC---CCCeEEEcCCCCCC
Q 008464 210 AEWGVDFVKHDCVFGDD----------------L-----DIN----EI-----SFVSEVLKEL---DRPIVYSLSPGTGV 256 (564)
Q Consensus 210 a~wGvdylK~D~~~~~~----------------~-----~~~----~y-----~~m~~al~~~---gr~i~~s~s~~~~~ 256 (564)
.+.|||++|+|+.-+.. . ... .| ++..+++++. .||++++=+....
T Consensus 146 ~~~Gvdg~w~D~~Ep~~~~~~~~~~~p~~~~~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G- 224 (339)
T cd06604 146 VDLGVDGIWNDMNEPAVFNTPGKTTMPRDAVHRLDGGGGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYAG- 224 (339)
T ss_pred hhCCCceEeecCCCccccCCcccccCCccceeeCCCCCCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEeccccc-
Confidence 89999999999753210 0 001 12 2344445443 3788886653110
Q ss_pred CchhhhhhcccccEEEEecCCCCChhhHHHHhh
Q 008464 257 TPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (564)
Q Consensus 257 ~p~~~~~~~~~~n~~Ris~D~~~~W~~~~~~~~ 289 (564)
...|+- =-++|...+|+.+...+.
T Consensus 225 -------~qry~~--~W~GD~~ssW~~L~~~i~ 248 (339)
T cd06604 225 -------IQRYAA--VWTGDNRSSWEHLRLSIP 248 (339)
T ss_pred -------cccccc--ccCCcccCCHHHHHHHHH
Confidence 123332 256788899998776543
No 19
>PRK10658 putative alpha-glucosidase; Provisional
Probab=99.20 E-value=7.1e-10 Score=126.04 Aligned_cols=211 Identities=21% Similarity=0.284 Sum_probs=137.9
Q ss_pred CCCCCCce---E-eccccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCcee
Q 008464 31 VRASSPPR---G-WNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIP 106 (564)
Q Consensus 31 ~~~~~pPm---G-WnSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~ 106 (564)
|.++.||. | |.|. .|..+.+|+++++.++.+++. ..-.+.|.+|+.|+... .++.++.
T Consensus 258 Grp~lpP~WalG~w~s~-~~~~~~~e~~v~~~~~~~r~~--~iP~d~i~lD~~w~~~~---------------~~~~f~w 319 (665)
T PRK10658 258 GRPALPPAWSFGLWLTT-SFTTNYDEATVNSFIDGMAER--DLPLHVFHFDCFWMKEF---------------QWCDFEW 319 (665)
T ss_pred CCCCCCchhhhheeeec-ccccCCCHHHHHHHHHHHHHc--CCCceEEEEchhhhcCC---------------ceeeeEE
Confidence 55666774 3 4443 244567899999999977542 23358999999998631 3678999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCC
Q 008464 107 DPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQH 186 (564)
Q Consensus 107 d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~ 186 (564)
|+++||+ .+.|+++||++|+|+-+|+.|++. .+++++.+... ..|..++.......-...+.
T Consensus 320 d~~~FPd------p~~mi~~L~~~G~k~~~~i~P~i~-----~~s~~f~e~~~-------~gy~vk~~~G~~~~~~~W~g 381 (665)
T PRK10658 320 DPRTFPD------PEGMLKRLKAKGLKICVWINPYIA-----QKSPLFKEGKE-------KGYLLKRPDGSVWQWDKWQP 381 (665)
T ss_pred ChhhCCC------HHHHHHHHHHCCCEEEEeccCCcC-----CCchHHHHHHH-------CCeEEECCCCCEeeeeecCC
Confidence 9999996 999999999999999999999874 23444432111 11223322111111111234
Q ss_pred CceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCC--------CCCChH----HH-----HHHHHHHHh-C--CCCe
Q 008464 187 GFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG--------DDLDIN----EI-----SFVSEVLKE-L--DRPI 246 (564)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~--------~~~~~~----~y-----~~m~~al~~-~--gr~i 246 (564)
+...+|+|+|+|++|+.+.++.+.+.|||.+|.|+.-. +..+.. .| ++..+++++ . .||+
T Consensus 382 ~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~~p~d~~~~~G~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~~ 461 (665)
T PRK10658 382 GMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGERIPTDVVWFDGSDPQKMHNYYTYLYNKTVFDVLKETRGEGEAV 461 (665)
T ss_pred CceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCceeeccceecCCCcHHHhcchhHHHHHHHHHHHHHHhcCCCceE
Confidence 45689999999999998888889999999999997421 111111 12 334455555 3 3688
Q ss_pred EEEcCC--CCCCCchhhhhhcccccEEEEecCCCCChhhHHHHhh
Q 008464 247 VYSLSP--GTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (564)
Q Consensus 247 ~~s~s~--~~~~~p~~~~~~~~~~n~~Ris~D~~~~W~~~~~~~~ 289 (564)
+++=|. |. ..|+-. =++|+..+|+.+...+.
T Consensus 462 i~tRs~~aGs----------Qry~~~--WsGD~~stw~~l~~si~ 494 (665)
T PRK10658 462 LFARSATVGG----------QQFPVH--WGGDCYSNYESMAESLR 494 (665)
T ss_pred EEEecccCCC----------CCCCCE--ECCCCCCCHHHHHHHHH
Confidence 886653 22 234322 46898889998876543
No 20
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=99.15 E-value=3e-10 Score=99.74 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=75.6
Q ss_pred CCeeeccCCCCCCC--CcEeecCC-CCccEEEEE----eecCCCceEeeCCCCccCCCcceeeEEeccCC-CCCCceEEC
Q 008464 458 EPLCLYKSRALLSS--DGEMIYKQ-QYQGKVHLL----ASKGVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLN 529 (564)
Q Consensus 458 ~~~Cld~~~~~~a~--~~~~c~g~-~~Q~w~~~~----~~~~~g~CLd~~~~~~~~~G~t~~v~~~~C~g-~~nQ~W~~~ 529 (564)
..+|||+.+.+... .+|.|++. .+|+|.+.. ....+++|||+.+.. +| ..+.++.|++ ..+|+|++.
T Consensus 9 ~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~~g~~~~~~~~~Cl~~~~~~---~~--~~~~~~~c~~~~~~Q~W~~~ 83 (124)
T cd00161 9 TGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTSDGTIRIKSSNLCLDVGGDA---PG--SKVRLYTCSGGSDNQRWTFN 83 (124)
T ss_pred CCeEEECCCCCCCCEEEEEECCCCCccCCEEEeCCCeEEEcCCCeEEcccCCC---CC--CEEEEEECCCCCcCCEEEEC
Confidence 46899998754222 89999998 899998731 222268999987653 45 2899999998 889999999
Q ss_pred CCCcEEeCCCCceEEecCCcCCCceEEEEE
Q 008464 530 PSGALISSYSGLCATVNLVKGNSSKQIFYM 559 (564)
Q Consensus 530 ~~G~l~n~~SG~Cldv~~~~~~~~~~~~~~ 559 (564)
.+|.|++..+++|||+.+.+++++.+++|-
T Consensus 84 ~~~~i~~~~~~~cl~~~~~~~~~~~v~~~~ 113 (124)
T cd00161 84 KDGTIRNLKSGKCLDVKGGNTNGTNLILWT 113 (124)
T ss_pred CCcEEEECCCCeEEeCCCCCCCCCEEEEEe
Confidence 889999999999999988765666666553
No 21
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.13 E-value=1.5e-09 Score=113.60 Aligned_cols=201 Identities=12% Similarity=0.086 Sum_probs=126.4
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008464 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (564)
Q Consensus 50 i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~ 129 (564)
-+++++++.++.+++. ..-.+.|.||.+|+..... ...+|.++.|++|||+ .+.|+++||+
T Consensus 21 ~~~~~v~~~~~~~~~~--~iP~d~i~lD~~w~~~~~~-----------~~~~~~f~wd~~~FPd------p~~mi~~L~~ 81 (317)
T cd06598 21 RNWQEVDDTIKTLREK--DFPLDAAILDLYWFGKDID-----------KGHMGNLDWDRKAFPD------PAGMIADLAK 81 (317)
T ss_pred CCHHHHHHHHHHHHHh--CCCceEEEEechhhcCccc-----------CCceeeeEeccccCCC------HHHHHHHHHH
Confidence 4789999999876432 2336899999999864210 1246789999999996 9999999999
Q ss_pred cCCeEEEEeecCccccccCCCCcccccccCCCcccCCCcccccccc-ccccccccCCCCceeecCCcHHHHHHHHHHHHH
Q 008464 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIG-LKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ 208 (564)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~-~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~ 208 (564)
+|+|+-+|+.|++.. +++.+.+.... .+..++.. .....-.+.+.....+|+|+|++++|+.+.++.
T Consensus 82 ~G~k~~~~v~P~v~~-----~~~~y~e~~~~-------g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~ 149 (317)
T cd06598 82 KGVKTIVITEPFVLK-----NSKNWGEAVKA-------GALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKK 149 (317)
T ss_pred cCCcEEEEEcCcccC-----CchhHHHHHhC-------CCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHH
Confidence 999999999998743 23333211111 11111110 001111122333468999999999999888888
Q ss_pred HHhhCccEEEecCCCCC-----C--C--Ch---H-HH-----HHHHHHHHh---CCCCeEEEcCCCCCCCchhhhhhccc
Q 008464 209 YAEWGVDFVKHDCVFGD-----D--L--DI---N-EI-----SFVSEVLKE---LDRPIVYSLSPGTGVTPAMAKEVSGL 267 (564)
Q Consensus 209 ~a~wGvdylK~D~~~~~-----~--~--~~---~-~y-----~~m~~al~~---~gr~i~~s~s~~~~~~p~~~~~~~~~ 267 (564)
+.+.|||++|.|++-.. . . .. . .| +++.+++++ -.||++++=+...- ...|
T Consensus 150 ~~~~Gvdg~w~D~~Ep~~~~~~~~~~~g~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~G--------sqry 221 (317)
T cd06598 150 LIDQGVTGWWGDLGEPEVHPPDMCHHKGKAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAG--------SQRY 221 (317)
T ss_pred hhhCCccEEEecCCCccccCCccccCCCcHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCc--------cccC
Confidence 99999999999987421 0 0 00 1 12 233344443 24788876553110 0223
Q ss_pred ccEEEEecCCCCChhhHHHHhhh
Q 008464 268 VNMYRITGDDWDTWGDVAAHFNV 290 (564)
Q Consensus 268 ~n~~Ris~D~~~~W~~~~~~~~~ 290 (564)
+.. -=++|...+|+.+...+..
T Consensus 222 ~~~-~WsGD~~s~W~~L~~~i~~ 243 (317)
T cd06598 222 GVI-PWSGDVGRTWDGLKSQPNA 243 (317)
T ss_pred cCC-ccCCCCcCCHHHHHHHHHH
Confidence 211 1247888999988776543
No 22
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=99.09 E-value=3.4e-09 Score=111.86 Aligned_cols=198 Identities=16% Similarity=0.083 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCCh--HHHHHHH
Q 008464 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGF--TEVAKKV 127 (564)
Q Consensus 50 i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Gl--k~lad~i 127 (564)
-+++++++.++.+.+. ..-.+.|.||..|+. ..+.+..|+++||+ . +.|+++|
T Consensus 21 ~~~~~v~~~~~~~r~~--~iP~d~i~lD~~~~~-----------------~~~~f~~d~~~FPd------p~~~~mi~~L 75 (339)
T cd06602 21 KNVDEVKEVVENMRAA--GIPLDVQWNDIDYMD-----------------RRRDFTLDPVRFPG------LKMPEFVDEL 75 (339)
T ss_pred CCHHHHHHHHHHHHHh--CCCcceEEECccccc-----------------CccceecccccCCC------ccHHHHHHHH
Confidence 4789999999876442 223688999999985 35789999999996 6 9999999
Q ss_pred HHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHH
Q 008464 128 HAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQ 207 (564)
Q Consensus 128 h~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~ 207 (564)
|++|+|+-+|+.|++......++++.+.+.. ...+..++.........+.++....+|+|+|++++|+...++
T Consensus 76 ~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~-------~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 76 HANGQHYVPILDPAISANEPTGSYPPYDRGL-------EMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHCCCEEEEEEeCccccCcCCCCCHHHHHHH-------HCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 9999999999999875321111222221100 012222322111111223333345699999999999987777
Q ss_pred H-HHhhCccEEEecCCCCCCC-ChH-HH-----HHHHHHHHh-C-CCCeEEEcCCCCCCCchhhhhhcccccEEEEecCC
Q 008464 208 Q-YAEWGVDFVKHDCVFGDDL-DIN-EI-----SFVSEVLKE-L-DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDD 277 (564)
Q Consensus 208 ~-~a~wGvdylK~D~~~~~~~-~~~-~y-----~~m~~al~~-~-gr~i~~s~s~~~~~~p~~~~~~~~~~n~~Ris~D~ 277 (564)
. +.+.|||++|.|+.-+... ... .| ++..+++++ . .||++++=+.... ...|+- =-++|.
T Consensus 149 ~~~~~~Gvdg~w~D~~Ep~~~~~~hN~y~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G--------~qry~~--~w~GD~ 218 (339)
T cd06602 149 DFHDQVPFDGLWIDMNEPSNFYDVHNLYGLSEAIATYKALQSIPGKRPFVISRSTFPG--------SGRYAG--HWLGDN 218 (339)
T ss_pred HHHhcCCCcEEEecCCCCchHhhhcchhhHHHHHHHHHHHHhcCCCCCEEEEecCccc--------ccccce--eECCCc
Confidence 6 5669999999998643211 111 12 223344443 3 3688886653110 023432 257789
Q ss_pred CCChhhHHHHhh
Q 008464 278 WDTWGDVAAHFN 289 (564)
Q Consensus 278 ~~~W~~~~~~~~ 289 (564)
..+|+.+...+-
T Consensus 219 ~s~W~~L~~~i~ 230 (339)
T cd06602 219 ASTWEDLRYSII 230 (339)
T ss_pred cCCHHHHHHHHH
Confidence 999998776543
No 23
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=99.07 E-value=3.5e-09 Score=110.89 Aligned_cols=195 Identities=17% Similarity=0.245 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008464 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (564)
Q Consensus 50 i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~ 129 (564)
-+++++++.++-+++. ....+.|.||..|.... .++.+..|++|||+ ++.|+++||+
T Consensus 21 ~~~~ev~~~~~~~~~~--~iP~d~i~lD~~~~~~~---------------~~~~f~~d~~~FPd------p~~mi~~L~~ 77 (319)
T cd06591 21 KTQEELLDVAKEYRKR--GIPLDVIVQDWFYWPKQ---------------GWGEWKFDPERFPD------PKAMVRELHE 77 (319)
T ss_pred CCHHHHHHHHHHHHHh--CCCccEEEEechhhcCC---------------CceeEEEChhhCCC------HHHHHHHHHH
Confidence 4899999999876542 33468999998887531 24599999999996 9999999999
Q ss_pred cCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHH-HHHHH
Q 008464 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLR-SLYQQ 208 (564)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~-~~~~~ 208 (564)
+|+|+-+++.|++.. +++.+.+... ..|..++....... .|.+.....+|+|||++++|+. .+.+.
T Consensus 78 ~G~kv~~~i~P~v~~-----~~~~y~e~~~-------~g~~v~~~~g~~~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~ 144 (319)
T cd06591 78 MNAELMISIWPTFGP-----ETENYKEMDE-------KGYLIKTDRGPRVT-MQFGGNTRFYDATNPEAREYYWKQLKKN 144 (319)
T ss_pred CCCEEEEEecCCcCC-----CChhHHHHHH-------CCEEEEcCCCCeee-eeCCCCccccCCCCHHHHHHHHHHHHHH
Confidence 999999999998742 3333322110 11222222111111 2333334679999999999874 44456
Q ss_pred HHhhCccEEEecCCCCCC-----------C---C-h---HHH-----HHHHHHHHhC---CCCeEEEcCCCCCCCchhhh
Q 008464 209 YAEWGVDFVKHDCVFGDD-----------L---D-I---NEI-----SFVSEVLKEL---DRPIVYSLSPGTGVTPAMAK 262 (564)
Q Consensus 209 ~a~wGvdylK~D~~~~~~-----------~---~-~---~~y-----~~m~~al~~~---gr~i~~s~s~~~~~~p~~~~ 262 (564)
+.+.|||++|+|+.-+.. + + . ..| ++..+++++. .||++++=+.. +.
T Consensus 145 ~~~~Gvdg~w~D~~Ep~~~~~~~~~~~~~~~~~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~-------~G 217 (319)
T cd06591 145 YYDKGVDAWWLDAAEPEYSVYDFGLDNYRYHLGPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAW-------AG 217 (319)
T ss_pred hhcCCCcEEEecCCCCCccCCcccccCcccCCCCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEeccc-------cc
Confidence 889999999999863210 0 0 0 112 2344455544 47888865531 10
Q ss_pred hhcccccEEEEecCCCCChhhHHHHhh
Q 008464 263 EVSGLVNMYRITGDDWDTWGDVAAHFN 289 (564)
Q Consensus 263 ~~~~~~n~~Ris~D~~~~W~~~~~~~~ 289 (564)
...|+... =++|...+|+.+...+.
T Consensus 218 -sqry~~~~-W~GD~~s~w~~L~~~i~ 242 (319)
T cd06591 218 -SQRYGALV-WSGDIDSSWETLRRQIA 242 (319)
T ss_pred -cccccCce-eCCCccccHHHHHHHHH
Confidence 12343221 24788889998876654
No 24
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=99.06 E-value=4.5e-10 Score=98.15 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=57.5
Q ss_pred eecCCCceEeeCCCCccCCCcceeeEEeccCCCCCCceEECCC--C--cEEeCCCCceEEecCCc-CCCceEEEEEE
Q 008464 489 ASKGVGVCLDASPKWKLTSKELRRGSFSKCKRDANQMWQLNPS--G--ALISSYSGLCATVNLVK-GNSSKQIFYMR 560 (564)
Q Consensus 489 ~~~~~g~CLd~~~~~~~~~G~t~~v~~~~C~g~~nQ~W~~~~~--G--~l~n~~SG~Cldv~~~~-~~~~~~~~~~~ 560 (564)
.+..+|+|||+.++++ ++| +.|++|+|++..+|+|++.+. | .|+|++||+|||+.+.+ ++|+.+++|-.
T Consensus 20 ~n~~sg~~L~v~~~~~-~~g--~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~~~~~g~~v~~~~~ 93 (105)
T PF14200_consen 20 RNVNSGKYLDVAGGST-ANG--TNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGGSTANGTNVQQWEY 93 (105)
T ss_dssp EETTTTEEEEEGCTTC-STT--EBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGGGSSSTTEBEEEEE-
T ss_pred EECCCCCEEEeCCCCc-CCC--cEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECCCCCCCCCEEEEEeC
Confidence 3457999999998876 489 399999999999999998654 4 58999999999998765 67898888753
No 25
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=99.06 E-value=7.9e-10 Score=97.16 Aligned_cols=92 Identities=21% Similarity=0.210 Sum_probs=71.2
Q ss_pred CCeeeccCCCCCCCCcEeecC-CCCccEEEE----EeecCCCceEeeCCCCccCCCcceeeEEeccCC-CCCCceEECCC
Q 008464 458 EPLCLYKSRALLSSDGEMIYK-QQYQGKVHL----LASKGVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLNPS 531 (564)
Q Consensus 458 ~~~Cld~~~~~~a~~~~~c~g-~~~Q~w~~~----~~~~~~g~CLd~~~~~~~~~G~t~~v~~~~C~g-~~nQ~W~~~~~ 531 (564)
..+|||+.+.+..-++|.|++ ..+|+|.+. .... +++|||+.+.+. + .++++.|++ ..+|+|.+..+
T Consensus 6 ~~~Cl~~~~~~~~v~l~~c~~~~~~Q~w~~~~~g~~~~~-~~~Cl~~~~~~~---~---~v~l~~c~~~~~~Q~W~~~~~ 78 (117)
T smart00458 6 TGKCLDVNGNSNPVGLFDCHGTGGNQLWKLTSDGAIRIA-TDLCLTANGNTG---S---TVTLYSCDGDADNQYWTVNKD 78 (117)
T ss_pred CCccEecCCCCceEEEEeCCCCCccceEEEeCCCeEEec-CCccCccCCCCC---C---EEEEEECCCCCcCCEEEECCC
Confidence 458999987652338999999 788999873 1222 689999876521 2 799999998 89999999988
Q ss_pred CcEEeCCCCceEEecCCcCCCceEEE
Q 008464 532 GALISSYSGLCATVNLVKGNSSKQIF 557 (564)
Q Consensus 532 G~l~n~~SG~Cldv~~~~~~~~~~~~ 557 (564)
|.|+++.+++|||+.+..+. ..+++
T Consensus 79 ~~i~~~~~~~cl~~~~~~~~-~~~~~ 103 (117)
T smart00458 79 GTIRNPDSGLCLDVKDGNTG-TKVIL 103 (117)
T ss_pred eeEEeCCCCEEEecCCCCCC-ceEEE
Confidence 99999999999999876544 34433
No 26
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.05 E-value=9.9e-09 Score=107.39 Aligned_cols=198 Identities=16% Similarity=0.137 Sum_probs=124.0
Q ss_pred CCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHH
Q 008464 49 TISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVH 128 (564)
Q Consensus 49 ~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih 128 (564)
..++++|++.++.+.+. ..-++.|.||.+|+... + .....+..|+++||+ ++.|+++||
T Consensus 25 ~~~q~~v~~~~~~~r~~--~iP~d~i~ld~~~~~~~--~-----------~~~~~f~~d~~~FPd------p~~mi~~L~ 83 (317)
T cd06599 25 PDAQEALLEFIDKCREH--DIPCDSFHLSSGYTSIE--G-----------GKRYVFNWNKDRFPD------PAAFVAKFH 83 (317)
T ss_pred ccHHHHHHHHHHHHHHc--CCCeeEEEEeccccccC--C-----------CceeeeecCcccCCC------HHHHHHHHH
Confidence 45689999999876432 23368999999998631 0 123458889999996 999999999
Q ss_pred HcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCcccccccccc-ccccccCCCCceeecCCcHHHHHHHHHHH-
Q 008464 129 AMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLK-ERACAWMQHGFMSVNTKLGAGRAFLRSLY- 206 (564)
Q Consensus 129 ~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~-~~~~~~~~~~~~~lD~t~p~~~~~~~~~~- 206 (564)
++|+|+-+|+.|++.. +++.+.+... ..|..++.... .....|.+.....+|+|+|++++|+.+.+
T Consensus 84 ~~g~k~~~~i~P~i~~-----~~~~y~e~~~-------~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 151 (317)
T cd06599 84 ERGIRLAPNIKPGLLQ-----DHPRYKELKE-------AGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVK 151 (317)
T ss_pred HCCCEEEEEeCCcccC-----CCHHHHHHHH-------CCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHH
Confidence 9999999999998742 2333221100 11222221110 01111223334579999999999997766
Q ss_pred HHHHhhCccEEEecCCCCC-----C--------CChH----HH-----HHHHHHHHhC---CCCeEEEcCCCCCCCchhh
Q 008464 207 QQYAEWGVDFVKHDCVFGD-----D--------LDIN----EI-----SFVSEVLKEL---DRPIVYSLSPGTGVTPAMA 261 (564)
Q Consensus 207 ~~~a~wGvdylK~D~~~~~-----~--------~~~~----~y-----~~m~~al~~~---gr~i~~s~s~~~~~~p~~~ 261 (564)
+.+.+.|||++|+|++-.. . .+.. .| .+..+++.+. .||++++=+...
T Consensus 152 ~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~g~~~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~------- 224 (317)
T cd06599 152 EALLDLGIDSTWNDNNEYEIWDDDAVCDGFGKPGTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFA------- 224 (317)
T ss_pred HHHhcCCCcEEEecCCCCccCCCcceecCCCCccchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCcc-------
Confidence 6788999999999986321 0 0101 12 2344455443 368887655311
Q ss_pred hhhcccccEEEEecCCCCChhhHHHHhh
Q 008464 262 KEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (564)
Q Consensus 262 ~~~~~~~n~~Ris~D~~~~W~~~~~~~~ 289 (564)
....|+ .--++|+..+|+.+...+.
T Consensus 225 -G~qry~--~~WsGD~~s~W~~L~~~i~ 249 (317)
T cd06599 225 -GIQRYA--QTWSGDNRTSWKTLRYNIA 249 (317)
T ss_pred -cccCCc--CeeCCCcccCHHHHHHHHH
Confidence 012342 2357899999998876654
No 27
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=99.05 E-value=6.5e-09 Score=108.72 Aligned_cols=195 Identities=15% Similarity=0.175 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008464 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (564)
Q Consensus 50 i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~ 129 (564)
-|++++++.++-+.+. ..-.+.|.||..|+. .++.+..|+++||+ .+.|++.||+
T Consensus 21 ~~~~~v~~~~~~~~~~--~iP~d~i~lD~~~~~-----------------~~~~f~~d~~~FPd------p~~~i~~l~~ 75 (317)
T cd06600 21 YPQDKVVEVVDIMQKE--GFPYDVVFLDIHYMD-----------------SYRLFTWDPYRFPE------PKKLIDELHK 75 (317)
T ss_pred CCHHHHHHHHHHHHHc--CCCcceEEEChhhhC-----------------CCCceeechhcCCC------HHHHHHHHHH
Confidence 4789999999876442 333689999999974 34678899999996 9999999999
Q ss_pred cCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHH
Q 008464 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY 209 (564)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~ 209 (564)
+|+|+-+|+.|++... ++.+.+.+. . -..+..++....+....+.++....+|+|+|++++|..+.++.+
T Consensus 76 ~g~k~~~~~~P~i~~~---~~~~~~~~~----~---~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 76 RNVKLVTIVDPGIRVD---QNYSPFLSG----M---DKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred CCCEEEEEeeccccCC---CCChHHHHH----H---HCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHH
Confidence 9999999999987521 112221110 0 01122222111111122334334579999999999998888776
Q ss_pred H-hhCccEEEecCCCCCCC-ChH-HH-----HHHHHHHHh---CCCCeEEEcCCCCCCCchhhhhhcccccEEEEecCCC
Q 008464 210 A-EWGVDFVKHDCVFGDDL-DIN-EI-----SFVSEVLKE---LDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDW 278 (564)
Q Consensus 210 a-~wGvdylK~D~~~~~~~-~~~-~y-----~~m~~al~~---~gr~i~~s~s~~~~~~p~~~~~~~~~~n~~Ris~D~~ 278 (564)
. +.|||++|+|+.-+... +.. .| .+..+++++ ..||++++=+.... ...|+ + =-++|..
T Consensus 146 ~~~~gvdg~w~D~~Ep~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G--------~qry~-~-~W~GD~~ 215 (317)
T cd06600 146 LNSQGVDGIWLDMNEPSDFEKVHNLYGLYEAMATAEGFRTSHPRNRIFILTRSGFAG--------SQKYA-A-IWTGDNT 215 (317)
T ss_pred hhcCCCceEEeeCCCCccHHHhcchhhHHHHHHHHHHHHHhcCCCCceEEEeccccc--------cCCcc-c-eECCccc
Confidence 5 99999999998643211 111 12 223334433 34788887764211 02344 2 3577888
Q ss_pred CChhhHHHHhh
Q 008464 279 DTWGDVAAHFN 289 (564)
Q Consensus 279 ~~W~~~~~~~~ 289 (564)
.+|+.+...+-
T Consensus 216 s~W~~L~~~i~ 226 (317)
T cd06600 216 ASWDDLKLSIP 226 (317)
T ss_pred ccHHHHHHHHH
Confidence 99998776544
No 28
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.04 E-value=7.3e-09 Score=107.12 Aligned_cols=189 Identities=19% Similarity=0.242 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008464 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (564)
Q Consensus 50 i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~ 129 (564)
.|+++|+++|+-+.+. ..-.+.|.||..|+.....- . -.+.++.++.|+++||+ .+.|+++||+
T Consensus 22 ~s~~ev~~v~~~~r~~--~iP~D~i~lD~dw~~~~~~~-----~---~~~~~~~ft~d~~~FPd------p~~mi~~Lh~ 85 (292)
T cd06595 22 YSDEEYLALMDRFKKH--NIPLDVLVIDMDWHVTDIPS-----K---YGSGWTGYSWNRKLFPD------PEKLLQDLHD 85 (292)
T ss_pred CCHHHHHHHHHHHHHh--CCCccEEEEecccccccccc-----c---ccCCcceeEEChhcCCC------HHHHHHHHHH
Confidence 5899999999876432 23368999999998632100 0 02457899999999995 9999999999
Q ss_pred cCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHH-HHHHHH
Q 008464 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFL-RSLYQQ 208 (564)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~-~~~~~~ 208 (564)
+|+|+-+++.|++. +.+..+. |.+ ..++.... ....+...+|+|+|+++++. +.+.+.
T Consensus 86 ~G~k~v~~v~P~~~---~~~~~~~--------y~~-----~~~~~~~~-----~~~~~~~~~D~tnp~a~~~w~~~~~~~ 144 (292)
T cd06595 86 RGLKVTLNLHPADG---IRAHEDQ--------YPE-----MAKALGVD-----PATEGPILFDLTNPKFMDAYFDNVHRP 144 (292)
T ss_pred CCCEEEEEeCCCcc---cCCCcHH--------HHH-----HHHhcCCC-----cccCCeEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999752 1111111 111 11111111 00112357899999999855 777778
Q ss_pred HHhhCccEEEecCCCC-----CCCChH------HHHHHHHHHHhCCCCeEEEcCCCCCCCchhhhhhcccccEEEEecCC
Q 008464 209 YAEWGVDFVKHDCVFG-----DDLDIN------EISFVSEVLKELDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDD 277 (564)
Q Consensus 209 ~a~wGvdylK~D~~~~-----~~~~~~------~y~~m~~al~~~gr~i~~s~s~~~~~~p~~~~~~~~~~n~~Ris~D~ 277 (564)
+.+.|||.+|.|+.-+ ....+. .|..++ +.-.||++++=|... ....|+-.| ++|+
T Consensus 145 ~~~~Gidg~W~D~~E~~~~~~~~~~~~~~~~~~~y~~~~---~~~~r~f~lsRs~~~--------G~qry~~~W--sGD~ 211 (292)
T cd06595 145 LEKQGVDFWWLDWQQGNRTRTPGLDPLWWLNHVHYLDSA---RNGRRPLIFSRWAGL--------GSHRYPIGF--SGDT 211 (292)
T ss_pred HHhcCCcEEEecCCCCcccccCCcchHHHHHHHHHHHhh---ccCCCcEEEEeeccc--------CCCcCCCcc--CCCc
Confidence 8999999999997532 111211 122222 134689998766311 113566566 8999
Q ss_pred CCChhhHHHHh
Q 008464 278 WDTWGDVAAHF 288 (564)
Q Consensus 278 ~~~W~~~~~~~ 288 (564)
..+|+.+...+
T Consensus 212 ~s~W~~l~~~i 222 (292)
T cd06595 212 IISWASLAFQP 222 (292)
T ss_pred ccCHHHHHHHH
Confidence 99999887644
No 29
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.03 E-value=4.9e-08 Score=103.11 Aligned_cols=229 Identities=14% Similarity=0.132 Sum_probs=129.3
Q ss_pred CCCCCceEec--cccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccc--c-----CCC
Q 008464 32 RASSPPRGWN--SYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVI--D-----EWG 102 (564)
Q Consensus 32 ~~~~pPmGWn--SW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~--d-----~~G 102 (564)
..+.||. |. -|.+-....|+++|++.++-+.+. ..-.+.|.||+ |+..... +.... .+-+ | .++
T Consensus 2 ~p~lpP~-walG~~~sr~~Y~~~~ev~~v~~~~~~~--~iP~d~i~lD~-W~~~~~~--~~w~d-~~y~~~~~~~~~~~~ 74 (340)
T cd06597 2 KPELLPK-WAFGLWMSANEWDTQAEVMRQMDAHEEH--GIPVTVVVIEQ-WSDEATF--YVFND-AQYTPKDGGAPLSYD 74 (340)
T ss_pred CCCCCch-HHhhhhhhccCCCCHHHHHHHHHHHHHc--CCCeeEEEEec-ccCccee--eeecc-chhcccccCCcceec
Confidence 3456664 33 333333346899999999876432 22368999995 8863210 00000 0000 1 123
Q ss_pred CceeC-CCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccC-CCccccccccccccc
Q 008464 103 RMIPD-PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERA 180 (564)
Q Consensus 103 ~~~~d-~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~-g~~~~~~Di~~~~~~ 180 (564)
....+ .+|||+ ++.|+++||++|+|+-+|+.|++........... ..|.+. -..+..++....+..
T Consensus 75 ~~~f~~~~~FPd------p~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~------~~~~~~~~~g~~vk~~~G~~~~ 142 (340)
T cd06597 75 DFSFPVEGRWPN------PKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQAD------NDEDYAVAQNYLVQRGVGKPYR 142 (340)
T ss_pred ccccCccccCCC------HHHHHHHHHHCCCEEEEEecCccccccccccccc------hhHHHHHHCCEEEEcCCCCccc
Confidence 44444 368995 9999999999999999999998853211000000 001110 012233332211111
Q ss_pred -cccCCCCceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCCC---C------CCC--------hHHH-HHHHHHHH
Q 008464 181 -CAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFG---D------DLD--------INEI-SFVSEVLK 240 (564)
Q Consensus 181 -~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~---~------~~~--------~~~y-~~m~~al~ 240 (564)
..|.++....+|+|+|+|++|..+.++.+. +.|||.+|+|+.-. . ... +..| +++.++++
T Consensus 143 ~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~ 222 (340)
T cd06597 143 IPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLR 222 (340)
T ss_pred cccccCCCceeecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHH
Confidence 123344456899999999999988887765 79999999996421 1 101 1112 34555565
Q ss_pred hCC-CCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHHHhh
Q 008464 241 ELD-RPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (564)
Q Consensus 241 ~~g-r~i~~s~s~~~~~~p~~~~~~~~~~n~~Ris~D~~~~W~~~~~~~~ 289 (564)
+.+ ||++++=|.... ...|+-.| ++|...+|+.+...+.
T Consensus 223 ~~~~r~filtRs~~~G--------sqry~~~W--sGD~~s~W~~L~~~i~ 262 (340)
T cd06597 223 RAKKDGVTFSRAGYTG--------AQAHGIFW--AGDENSTFGAFRWSVF 262 (340)
T ss_pred hccCCcEEEEecccCc--------cCCCccee--cCCCCCCHHHHHHHHH
Confidence 555 788876653110 12344334 8899999998876654
No 30
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=98.99 E-value=3.9e-08 Score=103.32 Aligned_cols=112 Identities=16% Similarity=0.188 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008464 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (564)
Q Consensus 50 i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~ 129 (564)
-|+++++++++.+.+. ..-++.|.||..|+. .++.++.|+++||+ .+.|+++||+
T Consensus 21 ~~~~ev~~v~~~~r~~--~IP~D~i~lDidy~~-----------------~~~~Ft~d~~~FPd------p~~mv~~L~~ 75 (332)
T cd06601 21 SNRSDLEEVVEGYRDN--NIPLDGLHVDVDFQD-----------------NYRTFTTNGGGFPN------PKEMFDNLHN 75 (332)
T ss_pred CCHHHHHHHHHHHHHc--CCCCceEEEcCchhc-----------------CCCceeecCCCCCC------HHHHHHHHHH
Confidence 4889999999876442 333689999999974 35789999999996 9999999999
Q ss_pred cCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHH
Q 008464 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY 209 (564)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~ 209 (564)
+|+|..+++.|++.. |..| +.....+|++||++++|....++.+
T Consensus 76 ~G~klv~~i~P~i~~---------------------g~~~---------------~~~~~~pDftnp~ar~wW~~~~~~l 119 (332)
T cd06601 76 KGLKCSTNITPVISY---------------------GGGL---------------GSPGLYPDLGRPDVREWWGNQYKYL 119 (332)
T ss_pred CCCeEEEEecCceec---------------------CccC---------------CCCceeeCCCCHHHHHHHHHHHHHH
Confidence 999999999998741 1000 0112358999999999998888888
Q ss_pred HhhCccEEEecCC
Q 008464 210 AEWGVDFVKHDCV 222 (564)
Q Consensus 210 a~wGvdylK~D~~ 222 (564)
.+-|||+++.|..
T Consensus 120 ~~~Gv~~~W~Dmn 132 (332)
T cd06601 120 FDIGLEFVWQDMT 132 (332)
T ss_pred HhCCCceeecCCC
Confidence 8999999999963
No 31
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=98.96 E-value=1.6e-09 Score=94.68 Aligned_cols=90 Identities=12% Similarity=0.062 Sum_probs=70.6
Q ss_pred ccccccccccCcCceEEEEecCCCCCCCCeeeccCCCCCCC----CcEeecCCCCccEEE--------EEeecCCCceEe
Q 008464 431 ANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSS----DGEMIYKQQYQGKVH--------LLASKGVGVCLD 498 (564)
Q Consensus 431 ~dlWt~~~~~~~~g~i~~~~~~~~~~~~~~Cld~~~~~~a~----~~~~c~g~~~Q~w~~--------~~~~~~~g~CLd 498 (564)
.+.|+........+.+.+... ..++|||+.+.++.+ ++|.|++..+|+|.+ .+.+..+++|||
T Consensus 2 nQ~W~~~~~~~~~g~Y~i~n~-----~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ld 76 (105)
T PF14200_consen 2 NQQWTFTPVGDSDGYYKIRNV-----NSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLD 76 (105)
T ss_dssp GGEEEEEEEETTTTEEEEEET-----TTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEE
T ss_pred CCEEEEEEecCCCCEEEEEEC-----CCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEE
Confidence 367877775434677777652 267999998876555 899999999999987 234557899999
Q ss_pred eCCCCccCCCcceeeEEecc-CCCCCCceEE
Q 008464 499 ASPKWKLTSKELRRGSFSKC-KRDANQMWQL 528 (564)
Q Consensus 499 ~~~~~~~~~G~t~~v~~~~C-~g~~nQ~W~~ 528 (564)
+.++++ ++| +.|++|+| ++.++|+|++
T Consensus 77 v~~~~~-~~g--~~v~~~~~~~~~~~Q~W~l 104 (105)
T PF14200_consen 77 VAGGST-ANG--TNVQQWEYDNGSDNQQWKL 104 (105)
T ss_dssp EGGGSS-STT--EBEEEEE-STSSGGGEEEE
T ss_pred ECCCCC-CCC--CEEEEEeCCCCCccCEEEe
Confidence 998877 489 39999999 9999999987
No 32
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=98.96 E-value=6.2e-09 Score=108.84 Aligned_cols=195 Identities=15% Similarity=0.236 Sum_probs=118.3
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCC-----CceeCCCCCCCCCCCCChHHHHH
Q 008464 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWG-----RMIPDPDRWPSSRGGKGFTEVAK 125 (564)
Q Consensus 51 ~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G-----~~~~d~~kFP~~~~~~Glk~lad 125 (564)
++++|+++++.+++. ..-.+.|.|| .|+.... +..| .++.|++|||+ .+.|++
T Consensus 21 s~~~v~~~~~~~~~~--~iP~d~i~ld-dw~~~~~-------------~~~g~~~~~~f~~d~~~FPd------p~~mi~ 78 (317)
T cd06594 21 GTDKVLEALEKARAA--GVKVAGLWLQ-DWTGRRE-------------TSFGDRLWWNWEWDPERYPG------LDELIE 78 (317)
T ss_pred CHHHHHHHHHHHHHc--CCCeeEEEEc-cccCccc-------------ccccceeeeeeEEChhhCCC------HHHHHH
Confidence 999999999976432 2236889999 5864210 1223 47899999996 999999
Q ss_pred HHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccC-CCccccccccccccccccCCCCceeecCCcHHHHHHHHH
Q 008464 126 KVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRS 204 (564)
Q Consensus 126 ~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~-g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~ 204 (564)
+||++|+|+-+++.|++..- ++-. |.+. -..|..++....+..-.|.+.....+|+|+|++++|..+
T Consensus 79 ~Lh~~G~~~~~~i~P~v~~~-----~~~~-------y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 146 (317)
T cd06594 79 ELKARGIRVLTYINPYLADD-----GPLY-------YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQ 146 (317)
T ss_pred HHHHCCCEEEEEecCceecC-----Cchh-------HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHH
Confidence 99999999999999987431 1100 1110 011222222111111122333346899999999999966
Q ss_pred HHHHH-HhhCccEEEecCCCC--------CCCCh----HHH-----HHHHHHHHhC---CCCeEEEcCCCCCCCchhhhh
Q 008464 205 LYQQY-AEWGVDFVKHDCVFG--------DDLDI----NEI-----SFVSEVLKEL---DRPIVYSLSPGTGVTPAMAKE 263 (564)
Q Consensus 205 ~~~~~-a~wGvdylK~D~~~~--------~~~~~----~~y-----~~m~~al~~~---gr~i~~s~s~~~~~~p~~~~~ 263 (564)
.++.+ .+.|||.+|.|+.-. ...+. ..| ++..+++++. +||++++=|.. + .
T Consensus 147 ~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~-------~-G 218 (317)
T cd06594 147 VIKEMLLDLGLSGWMADFGEYLPFDAVLHSGEDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGF-------T-G 218 (317)
T ss_pred HHHHHhhhcCCcEEEecCCCCCCCcceecCCCCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEcccc-------c-c
Confidence 66654 889999999997421 11111 123 2234444443 56888876531 1 0
Q ss_pred hcccccEEEEecCCCCChhh---HHHHh
Q 008464 264 VSGLVNMYRITGDDWDTWGD---VAAHF 288 (564)
Q Consensus 264 ~~~~~n~~Ris~D~~~~W~~---~~~~~ 288 (564)
...|+.+.+ ++|...+|+. +...+
T Consensus 219 sqry~~~~W-sGD~~s~W~~~~~L~~~i 245 (317)
T cd06594 219 SQKYSTLFW-AGDQMVSWDAHDGLKSVV 245 (317)
T ss_pred ccccccccc-CCCCCCCCcCcccHHHHH
Confidence 134554322 5888889983 55443
No 33
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.96 E-value=1.5e-08 Score=116.50 Aligned_cols=209 Identities=23% Similarity=0.347 Sum_probs=137.5
Q ss_pred CCCCCCc---eEeccccccccCCCHHHHHHHHHHHHHhhccCCceEEEeccc-ccccccCCccccCCCcccccCCCCcee
Q 008464 31 VRASSPP---RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYL-WYRRKVKGAYVDSLGFDVIDEWGRMIP 106 (564)
Q Consensus 31 ~~~~~pP---mGWnSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdg-W~~~~~~g~~~~~~~~~~~d~~G~~~~ 106 (564)
|-++.|| +| +.|-.....-+|+++++.++.+.+. +.-++.|.+|.. |.. .++.+..
T Consensus 256 Gkp~l~P~Wa~G-~~~~~~~~~~~e~~v~~~i~~~~~~--~IP~d~~~lD~~~~~~-----------------~~~~F~w 315 (772)
T COG1501 256 GKPPLPPKWALG-WLWTSRYTYYDEDEVLEFIDEMRER--DIPLDVFVLDIDFWMD-----------------NWGDFTW 315 (772)
T ss_pred CCCCCCCceecC-CCceeccccccHHHHHHHHhhcccc--cCcceEEEEeehhhhc-----------------cccceEE
Confidence 5566667 57 2333344456799999999987553 344689999985 753 4688999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccc-cccccCC
Q 008464 107 DPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKE-RACAWMQ 185 (564)
Q Consensus 107 d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~-~~~~~~~ 185 (564)
|+++||+ .|.|++++|++|+|+=+|+.|.+.. ++++..... ...|..|+.-... ..+-|.
T Consensus 316 d~~~FP~------pk~mi~~l~~~Gikl~~~i~P~i~~-----d~~~~~e~~-------~~Gy~~k~~~g~~~~~~~w~- 376 (772)
T COG1501 316 DPDRFPD------PKQMIAELHEKGIKLIVIINPYIKQ-----DSPLFKEAI-------EKGYFVKDPDGEIYQADFWP- 376 (772)
T ss_pred CcccCCC------HHHHHHHHHhcCceEEEEecccccc-----CCchHHHHH-------HCCeEEECCCCCEeeecccC-
Confidence 9999996 9999999999999999999997642 234332211 1234444432111 112232
Q ss_pred CCceeecCCcHHHHHHHH-HHHHHHHhhCccEEEecCCCCC---------CCChH----HH-----HHHHHHHHhC---C
Q 008464 186 HGFMSVNTKLGAGRAFLR-SLYQQYAEWGVDFVKHDCVFGD---------DLDIN----EI-----SFVSEVLKEL---D 243 (564)
Q Consensus 186 ~~~~~lD~t~p~~~~~~~-~~~~~~a~wGvdylK~D~~~~~---------~~~~~----~y-----~~m~~al~~~---g 243 (564)
..-..+|+|+|++++|.. ...+.+.+.|||.+|.|++-.. ..+.+ .| ++.-+++++. .
T Consensus 377 ~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~ 456 (772)
T COG1501 377 GNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNE 456 (772)
T ss_pred CcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCccccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCC
Confidence 234579999999999998 4557799999999999986321 11111 11 4555666665 4
Q ss_pred CCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHHHh
Q 008464 244 RPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHF 288 (564)
Q Consensus 244 r~i~~s~s~~~~~~p~~~~~~~~~~n~~Ris~D~~~~W~~~~~~~ 288 (564)
||++|+=|...-. ..++-.| ++|+...|+++...+
T Consensus 457 r~~~lsRsg~aG~--------Q~~~~~W--sGD~~s~wd~l~~si 491 (772)
T COG1501 457 RPFILSRSGYAGS--------QRYAAHW--SGDNRSSWDSLRESI 491 (772)
T ss_pred ceEEEEecccccc--------eecccee--CCccccchHHHHhhH
Confidence 8898877632110 1233333 689989999887654
No 34
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=98.95 E-value=4.6e-09 Score=93.00 Aligned_cols=96 Identities=20% Similarity=0.295 Sum_probs=72.1
Q ss_pred CCeeeccCCCCC-CC--CcEeecCCCCccEEE-----EEeecCCCceEeeCCCCccCCCcceeeEEeccCCC-CCCceEE
Q 008464 458 EPLCLYKSRALL-SS--DGEMIYKQQYQGKVH-----LLASKGVGVCLDASPKWKLTSKELRRGSFSKCKRD-ANQMWQL 528 (564)
Q Consensus 458 ~~~Cld~~~~~~-a~--~~~~c~g~~~Q~w~~-----~~~~~~~g~CLd~~~~~~~~~G~t~~v~~~~C~g~-~nQ~W~~ 528 (564)
..+|||+.+... .. .++.|.+..+|.|.+ +.......+||++.+.. +| +++.++.|+.. .+|+|.+
T Consensus 11 ~~~cl~~~~~~~~~~~v~l~~c~~~~~Q~w~~~~~~~i~~~~~~~~CL~~~~~~---~~--~~i~l~~C~~~~~~Q~W~~ 85 (124)
T PF00652_consen 11 SGLCLDVQGSTKNGSPVVLYPCDGSDNQLWRFDPDGQIRSNNNPNLCLDVDGSS---PG--TKIVLWPCDSNSSNQRWKF 85 (124)
T ss_dssp GGEEEEEGGSSSTTTBEEEEE--SSGGGEEEEETTSBEEETTETTEEEEESSSS---TT--EBEEEEETTTTGGGGBEEE
T ss_pred CCCeEEEcCCCCCCCEEEEEECCCCCceeEEEcCCCceeeccCcceEEEeeccC---CC--ceEEEeeccCCccCCeEEE
Confidence 458999982111 11 899999988899987 23322234599998774 45 38999999865 4599999
Q ss_pred CCCCcEEeCCCCceEEecCCcCCCceEEEEE
Q 008464 529 NPSGALISSYSGLCATVNLVKGNSSKQIFYM 559 (564)
Q Consensus 529 ~~~G~l~n~~SG~Cldv~~~~~~~~~~~~~~ 559 (564)
..++.|+|..||+|||+.+.. +++.++++-
T Consensus 86 ~~~~~i~n~~s~~cL~~~~~~-~~~~l~~~~ 115 (124)
T PF00652_consen 86 DPDGRIRNKNSGLCLDVKGGS-DGNPLVLWP 115 (124)
T ss_dssp ETTSBEEETTTTEEEEEGGGS-TTEBEEEEE
T ss_pred cCCeeEEeCCCCEEEEecCCC-CCCEEEEEE
Confidence 999999999999999999877 888887764
No 35
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=98.88 E-value=1.6e-07 Score=95.89 Aligned_cols=166 Identities=19% Similarity=0.265 Sum_probs=111.1
Q ss_pred CCCCCceEe--ccccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCc--eeC
Q 008464 32 RASSPPRGW--NSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRM--IPD 107 (564)
Q Consensus 32 ~~~~pPmGW--nSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~--~~d 107 (564)
.++.||. | -.|.......+++++++.++.+.+ ....++.|.||++|+.. .+.. +.|
T Consensus 2 ~p~~~P~-wa~G~~~~~~~~~~~~~v~~~~~~~~~--~~iP~d~~~lD~~~~~~-----------------~~~f~~~~d 61 (265)
T cd06589 2 KPALPPK-WAFGYWLSRYGYGDQDKVLEVIDGMRE--NDIPLDGFVLDDDYTDG-----------------YGDFTFDWD 61 (265)
T ss_pred CCCCCcH-HHHHHHHhcCCCCCHHHHHHHHHHHHH--cCCCccEEEECcccccC-----------------CceeeeecC
Confidence 3566775 4 244445556899999999987643 22337899999999863 3455 899
Q ss_pred CCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCC
Q 008464 108 PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHG 187 (564)
Q Consensus 108 ~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~ 187 (564)
+++||+ ++.++++||++|+|+.+|+.|++
T Consensus 62 ~~~Fpd------p~~~i~~l~~~g~~~~~~~~P~v--------------------------------------------- 90 (265)
T cd06589 62 AGKFPN------PKSMIDELHDNGVKLVLWIDPYI--------------------------------------------- 90 (265)
T ss_pred hhhCCC------HHHHHHHHHHCCCEEEEEeChhH---------------------------------------------
Confidence 999996 99999999999999999988743
Q ss_pred ceeecCCcHHHHHHHHHHHHH-HHhhCccEEEecCCCCCCC-------------Ch----HHH-----HHHHHHHHhC--
Q 008464 188 FMSVNTKLGAGRAFLRSLYQQ-YAEWGVDFVKHDCVFGDDL-------------DI----NEI-----SFVSEVLKEL-- 242 (564)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~-~a~wGvdylK~D~~~~~~~-------------~~----~~y-----~~m~~al~~~-- 242 (564)
++|+.+.++. +.+.|||++|+|+.-.... .. ..| +++.+++++.
T Consensus 91 -----------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~ 159 (265)
T cd06589 91 -----------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHEEMHNAYPLLYAEATYEALRKNSK 159 (265)
T ss_pred -----------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHHHHcchhHHHHHHHHHHHHHHhcC
Confidence 3344444444 4899999999998632110 11 112 2344555443
Q ss_pred -CCCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHHHhh
Q 008464 243 -DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (564)
Q Consensus 243 -gr~i~~s~s~~~~~~p~~~~~~~~~~n~~Ris~D~~~~W~~~~~~~~ 289 (564)
.||++++-+.... ...|+ .--++|...+|+.+...+.
T Consensus 160 ~~r~~~~sRs~~~G--------sqry~--~~W~GD~~stW~~l~~~i~ 197 (265)
T cd06589 160 NKRPFILSRSGYAG--------SQRYA--GMWSGDNTSTWGYLRSQIP 197 (265)
T ss_pred CCCeEEEEcCCccc--------ccCcC--ceeCCcccCCHHHHHHHHH
Confidence 4688887764210 12342 3357788889999876654
No 36
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=98.85 E-value=2.9e-07 Score=107.39 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=102.5
Q ss_pred CCCCCCce---Ee--ccccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCce
Q 008464 31 VRASSPPR---GW--NSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMI 105 (564)
Q Consensus 31 ~~~~~pPm---GW--nSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~ 105 (564)
|..+.||. |+ |-|. .-+++++++.++.+.+. ..-.+.|.+|..|+. .+..++
T Consensus 178 Grp~mpP~WALGy~qSR~~----Y~sq~eV~eva~~fre~--~IP~DvIwlDidYm~-----------------g~~~FT 234 (978)
T PLN02763 178 GTVFMPPKWALGYQQCRWS----YESAKRVAEIARTFREK--KIPCDVVWMDIDYMD-----------------GFRCFT 234 (978)
T ss_pred CCCCCCchHHhheeeccCC----CCCHHHHHHHHHHHHHc--CCCceEEEEehhhhc-----------------CCCcee
Confidence 67777884 32 2222 24789999999877542 333689999988864 346789
Q ss_pred eCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCC
Q 008464 106 PDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQ 185 (564)
Q Consensus 106 ~d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~ 185 (564)
.|+++||+ .+.|++++|++|+|.-.++.|++.. +++.+++.+.. ..++..++....+....++|
T Consensus 235 wD~~rFPd------P~~mv~~Lh~~G~kvv~iidPgI~~---d~gY~~y~eg~-------~~~~fvk~~~G~~y~G~vWp 298 (978)
T PLN02763 235 FDKERFPD------PKGLADDLHSIGFKAIWMLDPGIKA---EEGYFVYDSGC-------ENDVWIQTADGKPFVGEVWP 298 (978)
T ss_pred ECcccCCC------HHHHHHHHHHCCCEEEEEEcCCCcc---CCCCHHHHhHh-------hcCeeEECCCCCeeEeeecC
Confidence 99999996 9999999999999997778898742 12222221100 00111111111111112234
Q ss_pred CCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCC
Q 008464 186 HGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (564)
Q Consensus 186 ~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (564)
+....+|+|+|++++|.....+.|.+.|||+++.|+.
T Consensus 299 G~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~Dmn 335 (978)
T PLN02763 299 GPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMN 335 (978)
T ss_pred CCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCC
Confidence 3345689999999999999999999999999999974
No 37
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=98.77 E-value=4.7e-08 Score=103.22 Aligned_cols=196 Identities=14% Similarity=0.070 Sum_probs=124.1
Q ss_pred CCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHH
Q 008464 49 TISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVH 128 (564)
Q Consensus 49 ~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih 128 (564)
.-|++++++.++.+.+. ..-.+.|.||..|+. ..+.+..|++|||+ ++.|+++||
T Consensus 20 y~~~~ev~~~~~~~~~~--~iP~d~i~lD~~~~~-----------------~~~~f~~d~~~FPd------p~~mi~~L~ 74 (339)
T cd06603 20 YKDQEDVKEVDAGFDEH--DIPYDVIWLDIEHTD-----------------GKRYFTWDKKKFPD------PEKMQEKLA 74 (339)
T ss_pred CCCHHHHHHHHHHHHHc--CCCceEEEEChHHhC-----------------CCCceEeCcccCCC------HHHHHHHHH
Confidence 35899999999876442 233689999999874 24678999999996 999999999
Q ss_pred HcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHH
Q 008464 129 AMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ 208 (564)
Q Consensus 129 ~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~ 208 (564)
++|+|+-+|+.|++.. +++++++.+... ..|..++....+....+.++....+|+|+|++++|+...++.
T Consensus 75 ~~G~k~~~~~~P~v~~---~~~~~~y~e~~~-------~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~ 144 (339)
T cd06603 75 SKGRKLVTIVDPHIKR---DDGYYVYKEAKD-------KGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSY 144 (339)
T ss_pred HCCCEEEEEecCceec---CCCCHHHHHHHH-------CCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHH
Confidence 9999999999998742 122343322110 123333322211111222333356999999999999877776
Q ss_pred HH---hhCccEEEecCCCCC-------CC----------ChH----HH-----HHHHHHHHhC----CCCeEEEcCCCCC
Q 008464 209 YA---EWGVDFVKHDCVFGD-------DL----------DIN----EI-----SFVSEVLKEL----DRPIVYSLSPGTG 255 (564)
Q Consensus 209 ~a---~wGvdylK~D~~~~~-------~~----------~~~----~y-----~~m~~al~~~----gr~i~~s~s~~~~ 255 (564)
+. +-|++++++|..-+. .+ ... .| ++..+++.+. .||++++=+....
T Consensus 145 ~~~~~~~g~~g~w~D~~Ep~~f~~~~~~~p~d~~~~~~~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~G 224 (339)
T cd06603 145 DKYKGSTENLYIWNDMNEPSVFNGPELTMPKDAIHYGGIEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFAG 224 (339)
T ss_pred HhhcccCCCceEEeccCCccccCCCCCcCCCcceecCCCcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence 54 479999999965311 00 111 12 2334445432 4788777653210
Q ss_pred CCchhhhhhcccccEEEEecCCCCChhhHHHHhh
Q 008464 256 VTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (564)
Q Consensus 256 ~~p~~~~~~~~~~n~~Ris~D~~~~W~~~~~~~~ 289 (564)
...|+- =-++|...+|+.+...+.
T Consensus 225 --------~qry~~--~W~GD~~s~W~~L~~~i~ 248 (339)
T cd06603 225 --------SQRYAA--IWTGDNTATWEHLKISIP 248 (339)
T ss_pred --------ccceee--eeCCCccCCHHHHHHHHH
Confidence 123432 357799999998877654
No 38
>PRK10426 alpha-glucosidase; Provisional
Probab=98.58 E-value=4.5e-07 Score=103.08 Aligned_cols=215 Identities=13% Similarity=0.124 Sum_probs=125.8
Q ss_pred CCCCCCceEecc---ccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeC
Q 008464 31 VRASSPPRGWNS---YDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPD 107 (564)
Q Consensus 31 ~~~~~pPmGWnS---W~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d 107 (564)
|..+.||. |.= |..++ -+++++++.++.+.+. ..-.+.|.|| .|+..... .+. ...+++++.|
T Consensus 199 Gr~p~~P~-Wal~G~~~g~~--~~~~~v~~v~~~~r~~--~IP~d~i~ld-dw~~~~~~-------~~g-~~~~~~~~~d 264 (635)
T PRK10426 199 GRQPELPD-WAYDGVTLGIQ--GGTEVVQKKLDTMRNA--GVKVNGIWAQ-DWSGIRMT-------SFG-KRLMWNWKWD 264 (635)
T ss_pred CCCCCCCh-hhccCcccccc--CCHHHHHHHHHHHHHc--CCCeeEEEEe-cccccccc-------ccc-ccccccceEC
Confidence 66667775 432 22232 2577888888765432 2225788888 49753210 000 0123467899
Q ss_pred CCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCC
Q 008464 108 PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHG 187 (564)
Q Consensus 108 ~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~ 187 (564)
+++||+ .+.++++||++|+|+=+|+.|++.. +++++.+... ..|..++.........+.+..
T Consensus 265 ~~~FPd------p~~mi~~L~~~G~k~v~~i~P~v~~-----~~~~y~e~~~-------~gy~vk~~~g~~~~~~~~~~~ 326 (635)
T PRK10426 265 SERYPQ------LDSRIKQLNEEGIQFLGYINPYLAS-----DGDLCEEAAE-------KGYLAKDADGGDYLVEFGEFY 326 (635)
T ss_pred hhhCCC------HHHHHHHHHHCCCEEEEEEcCccCC-----CCHHHHHHHH-------CCcEEECCCCCEEEeEecCCC
Confidence 999995 9999999999999999999998742 3444322111 122333321111111112222
Q ss_pred ceeecCCcHHHHHHHHHHH-HHHHhhCccEEEecCCCC--------CCCChH----HH-----HHHHHHHHhC---CCCe
Q 008464 188 FMSVNTKLGAGRAFLRSLY-QQYAEWGVDFVKHDCVFG--------DDLDIN----EI-----SFVSEVLKEL---DRPI 246 (564)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~-~~~a~wGvdylK~D~~~~--------~~~~~~----~y-----~~m~~al~~~---gr~i 246 (564)
...+|+|+|++++|+...+ +.+.+.|||.+|.|+.-. .+.+.. .| ++..+++++. +||+
T Consensus 327 ~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f 406 (635)
T PRK10426 327 AGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYLPTDAYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEIL 406 (635)
T ss_pred ceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCCCCcceeeCCCCHHHhccHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 3479999999999997666 468899999999997421 111211 12 2334445443 5788
Q ss_pred EEEcCCCCCCCchhhhhhccccc-EEEEecCCCCChh---hHHHH
Q 008464 247 VYSLSPGTGVTPAMAKEVSGLVN-MYRITGDDWDTWG---DVAAH 287 (564)
Q Consensus 247 ~~s~s~~~~~~p~~~~~~~~~~n-~~Ris~D~~~~W~---~~~~~ 287 (564)
+++=+... ....|+. .| ++|...+|+ .+...
T Consensus 407 ~ltRsg~a--------GsQry~~~~W--sGD~~ssW~~~d~L~~~ 441 (635)
T PRK10426 407 FFMRAGYT--------GSQKYSTLFW--AGDQNVDWSLDDGLASV 441 (635)
T ss_pred EEEccccC--------CcCCcccccc--CCCCCCcCcChhHHHHH
Confidence 88765311 0124543 24 688888996 45444
No 39
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=98.43 E-value=1e-06 Score=77.14 Aligned_cols=95 Identities=19% Similarity=0.251 Sum_probs=71.5
Q ss_pred ceecccCCCCC-cccccccccccCcCceEEEEecCCCCCCCCeeeccCCCCCCC--CcEeecC-CCCccEEEE----Eee
Q 008464 419 HVLGLTSCKDP-KANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSS--DGEMIYK-QQYQGKVHL----LAS 490 (564)
Q Consensus 419 ~~lGL~~~~~~-~~dlWt~~~~~~~~g~i~~~~~~~~~~~~~~Cld~~~~~~a~--~~~~c~g-~~~Q~w~~~----~~~ 490 (564)
..|.|..|... ..+.|.... .+.|.... ..+|||+.+..... .++.|++ ..+|+|.+. +..
T Consensus 22 ~~v~~~~c~~~~~~Q~W~~~~----~g~~~~~~-------~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W~~~~~~~i~~ 90 (124)
T cd00161 22 GPVQLYPCHGNGNNQKWTLTS----DGTIRIKS-------SNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTFNKDGTIRN 90 (124)
T ss_pred CEEEEEECCCCCccCCEEEeC----CCeEEEcC-------CCeEEcccCCCCCCEEEEEECCCCCcCCEEEECCCcEEEE
Confidence 56778888876 789998875 46666642 34899987654223 8999998 789999872 233
Q ss_pred cCCCceEeeCCCCccCCCcceeeEEeccCCCCCCceEE
Q 008464 491 KGVGVCLDASPKWKLTSKELRRGSFSKCKRDANQMWQL 528 (564)
Q Consensus 491 ~~~g~CLd~~~~~~~~~G~t~~v~~~~C~g~~nQ~W~~ 528 (564)
..+++|||+.+.++ +| +.|.++.|++..+|+|.+
T Consensus 91 ~~~~~cl~~~~~~~--~~--~~v~~~~c~~~~~Q~W~~ 124 (124)
T cd00161 91 LKSGKCLDVKGGNT--NG--TNLILWTCDGGPNQKWKF 124 (124)
T ss_pred CCCCeEEeCCCCCC--CC--CEEEEEeCCCCccceEeC
Confidence 44799999987754 56 389999999999999974
No 40
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=98.39 E-value=1.3e-06 Score=76.52 Aligned_cols=93 Identities=19% Similarity=0.262 Sum_probs=69.3
Q ss_pred ceecccCCCC-CcccccccccccCcCceEEEEecCCCCCCCCeeeccCCCCCCC-CcEeecC-CCCccEEE----EEeec
Q 008464 419 HVLGLTSCKD-PKANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSS-DGEMIYK-QQYQGKVH----LLASK 491 (564)
Q Consensus 419 ~~lGL~~~~~-~~~dlWt~~~~~~~~g~i~~~~~~~~~~~~~~Cld~~~~~~a~-~~~~c~g-~~~Q~w~~----~~~~~ 491 (564)
..+.|..|+. ...+.|+... .+.|... ..+|||+.+...+. .+|.|.+ ..+|+|.+ .+...
T Consensus 17 ~~v~l~~c~~~~~~Q~w~~~~----~g~~~~~--------~~~Cl~~~~~~~~~v~l~~c~~~~~~Q~W~~~~~~~i~~~ 84 (117)
T smart00458 17 NPVGLFDCHGTGGNQLWKLTS----DGAIRIA--------TDLCLTANGNTGSTVTLYSCDGDADNQYWTVNKDGTIRNP 84 (117)
T ss_pred ceEEEEeCCCCCccceEEEeC----CCeEEec--------CCccCccCCCCCCEEEEEECCCCCcCCEEEECCCeeEEeC
Confidence 4677888987 6789998873 4566543 23799987654323 8999998 88999987 22334
Q ss_pred CCCceEeeCCCCccCCCcceeeEEeccCCCCCCceEE
Q 008464 492 GVGVCLDASPKWKLTSKELRRGSFSKCKRDANQMWQL 528 (564)
Q Consensus 492 ~~g~CLd~~~~~~~~~G~t~~v~~~~C~g~~nQ~W~~ 528 (564)
.+++|||+.+..+. ++++++.|++..+|+|.+
T Consensus 85 ~~~~cl~~~~~~~~-----~~~~~~~c~~~~~Q~W~~ 116 (117)
T smart00458 85 DSGLCLDVKDGNTG-----TKVILWTCNGNPNQKWIF 116 (117)
T ss_pred CCCEEEecCCCCCC-----ceEEEEeCCCCccccEEe
Confidence 68999999876431 279999999999999986
No 41
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=98.08 E-value=2.9e-05 Score=79.16 Aligned_cols=131 Identities=21% Similarity=0.361 Sum_probs=77.2
Q ss_pred cccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHH
Q 008464 46 FCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAK 125 (564)
Q Consensus 46 ~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad 125 (564)
|...+|.+..++.+|+- .++|++|+.||.||..... +...+++ +..|. ..|+.|++
T Consensus 25 ~~~g~~t~~~k~yIDfA----a~~G~eYvlvD~GW~~~~~-------------~~~~d~~---~~~~~----~dl~elv~ 80 (273)
T PF10566_consen 25 FKHGATTETQKRYIDFA----AEMGIEYVLVDAGWYGWEK-------------DDDFDFT---KPIPD----FDLPELVD 80 (273)
T ss_dssp S-BSSSHHHHHHHHHHH----HHTT-SEEEEBTTCCGS---------------TTT--TT----B-TT------HHHHHH
T ss_pred CcCCCCHHHHHHHHHHH----HHcCCCEEEeccccccccc-------------ccccccc---ccCCc----cCHHHHHH
Confidence 33468999999999973 5789999999999985311 0111111 11121 25999999
Q ss_pred HHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHH
Q 008464 126 KVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSL 205 (564)
Q Consensus 126 ~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~ 205 (564)
|-++||.++=||..--.. + ...+ ++ ++ ++..
T Consensus 81 Ya~~KgVgi~lw~~~~~~----------------------~---~~~~-----------------~~------~~-~~~~ 111 (273)
T PF10566_consen 81 YAKEKGVGIWLWYHSETG----------------------G---NVAN-----------------LE------KQ-LDEA 111 (273)
T ss_dssp HHHHTT-EEEEEEECCHT----------------------T---BHHH-----------------HH------CC-HHHH
T ss_pred HHHHcCCCEEEEEeCCcc----------------------h---hhHh-----------------HH------HH-HHHH
Confidence 999999999898643110 0 0000 00 11 3567
Q ss_pred HHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHh-CCCCeEEEcC
Q 008464 206 YQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKE-LDRPIVYSLS 251 (564)
Q Consensus 206 ~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~-~gr~i~~s~s 251 (564)
++++++|||..||+||...++ .+...-..+++++ +...+++...
T Consensus 112 f~~~~~~Gv~GvKidF~~~d~--Q~~v~~y~~i~~~AA~~~LmvnfH 156 (273)
T PF10566_consen 112 FKLYAKWGVKGVKIDFMDRDD--QEMVNWYEDILEDAAEYKLMVNFH 156 (273)
T ss_dssp HHHHHHCTEEEEEEE--SSTS--HHHHHHHHHHHHHHHHTT-EEEET
T ss_pred HHHHHHcCCCEEeeCcCCCCC--HHHHHHHHHHHHHHHHcCcEEEec
Confidence 899999999999999987533 3344445555543 3356777765
No 42
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=97.96 E-value=5.4e-05 Score=86.05 Aligned_cols=148 Identities=19% Similarity=0.205 Sum_probs=103.6
Q ss_pred CCCCceEeccccccc--cCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCC
Q 008464 33 ASSPPRGWNSYDSFC--WTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDR 110 (564)
Q Consensus 33 ~~~pPmGWnSW~~~~--~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~k 110 (564)
...|| .|+-+..+. ...+.+++++.++.+.. ...+++.+.+|.-|+. ++++.+.|+.+
T Consensus 290 P~m~p-YWslGf~~~RwgY~nls~~~dvv~~~~~--agiPld~~~~DiDyMd-----------------~ykDFTvd~~~ 349 (805)
T KOG1065|consen 290 PAMPP-YWSLGFQLCRWGYKNLSVVRDVVENYRA--AGIPLDVIVIDIDYMD-----------------GYKDFTVDKVW 349 (805)
T ss_pred ccCCc-hhhccceecccccccHHHHHHHHHHHHH--cCCCcceeeeehhhhh-----------------cccceeecccc
Confidence 33344 499988665 35788888888876521 2345789999998874 57899999999
Q ss_pred CCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccc------cccC
Q 008464 111 WPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERA------CAWM 184 (564)
Q Consensus 111 FP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~------~~~~ 184 (564)
|| +|+.+++.||++|||.=+...|++..-.. + +.|.+ | ..+++..+... ..-.
T Consensus 350 fp------~~~~fv~~Lh~~G~kyvliidP~is~~~~------y-----~~y~~-g---~~~~v~I~~~~g~~~~lg~vw 408 (805)
T KOG1065|consen 350 FP------DLKDFVDDLHARGFKYVLIIDPFISTNSS------Y-----GPYDR-G---VAKDVLIKNREGSPKMLGEVW 408 (805)
T ss_pred Cc------chHHHHHHHHhCCCeEEEEeCCccccCcc------c-----hhhhh-h---hhhceeeecccCchhhhcccC
Confidence 99 49999999999999999999999864111 0 11221 0 12222221100 0112
Q ss_pred CCCceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecC
Q 008464 185 QHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDC 221 (564)
Q Consensus 185 ~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~ 221 (564)
|+..+..|+++|.+..|...-++.|. +-+||.+++|.
T Consensus 409 P~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDm 446 (805)
T KOG1065|consen 409 PGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDM 446 (805)
T ss_pred CCcccccccCCchHHHHHHHHHHhhcccCCccceEEEC
Confidence 33567799999999999876677776 69999999996
No 43
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=97.64 E-value=0.00014 Score=64.14 Aligned_cols=61 Identities=25% Similarity=0.547 Sum_probs=46.7
Q ss_pred CCceEeeCCCCccCCCcceeeEEeccCCCCCCceEECCCCcEEeCCCC-ceEEecCCcCCCceEEEE
Q 008464 493 VGVCLDASPKWKLTSKELRRGSFSKCKRDANQMWQLNPSGALISSYSG-LCATVNLVKGNSSKQIFY 558 (564)
Q Consensus 493 ~g~CLd~~~~~~~~~G~t~~v~~~~C~g~~nQ~W~~~~~G~l~n~~SG-~Cldv~~~~~~~~~~~~~ 558 (564)
+++|||+. ... ..| ..|.+++|.+..+|+|.+..+|.|...... +||++.+.. .++.+.++
T Consensus 11 ~~~cl~~~-~~~-~~~--~~v~l~~c~~~~~Q~w~~~~~~~i~~~~~~~~CL~~~~~~-~~~~i~l~ 72 (124)
T PF00652_consen 11 SGLCLDVQ-GST-KNG--SPVVLYPCDGSDNQLWRFDPDGQIRSNNNPNLCLDVDGSS-PGTKIVLW 72 (124)
T ss_dssp GGEEEEEG-GSS-STT--TBEEEEE--SSGGGEEEEETTSBEEETTETTEEEEESSSS-TTEBEEEE
T ss_pred CCCeEEEc-CCC-CCC--CEEEEEECCCCCceeEEEcCCCceeeccCcceEEEeeccC-CCceEEEe
Confidence 79999998 333 355 389999999988999999999998777765 599999887 66665543
No 44
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0042 Score=69.38 Aligned_cols=84 Identities=23% Similarity=0.307 Sum_probs=62.1
Q ss_pred CCeeeccCC--CC--CCCCcEeecCC-CCccEEEEEe--ecCCCceEeeCCCCccCCCcceeeEEeccCCCCCCceEECC
Q 008464 458 EPLCLYKSR--AL--LSSDGEMIYKQ-QYQGKVHLLA--SKGVGVCLDASPKWKLTSKELRRGSFSKCKRDANQMWQLNP 530 (564)
Q Consensus 458 ~~~Cld~~~--~~--~a~~~~~c~g~-~~Q~w~~~~~--~~~~g~CLd~~~~~~~~~G~t~~v~~~~C~g~~nQ~W~~~~ 530 (564)
...|+|... .. .+..++.|.+. .+|.|.+... ......|||+. . .| .|++..|...+||.|.+..
T Consensus 463 ~~~cld~~~~~~~~~~~~~~~~Ch~~~~~Q~~~yT~~~eir~~~~cl~~~---~--~~---~v~l~~C~~~~~q~w~~~~ 534 (578)
T KOG3736|consen 463 PNLCLDTERAPAGQGMAVGLYPCHGPGGNQYFPYTKQGEIRIGDLCLDVD---D--AG---KVTLYDCHKMGNQLWHYDK 534 (578)
T ss_pred cchhhhhhchhccCCCcceEecCCCccccccccccCCcceEECCEEeccc---c--CC---ceEEEecccccccceEEcC
Confidence 558999865 22 23389999985 4688876211 11134899986 1 44 3999999776799999988
Q ss_pred CCcEEeCCCCceEEecCCc
Q 008464 531 SGALISSYSGLCATVNLVK 549 (564)
Q Consensus 531 ~G~l~n~~SG~Cldv~~~~ 549 (564)
+|.|+++.||+||+.....
T Consensus 535 ~~~i~~~~sg~CL~~~~~~ 553 (578)
T KOG3736|consen 535 DGTLYHRNSGKCLEAAVDK 553 (578)
T ss_pred CCceEcCCCCccccccCCC
Confidence 8999999999999997653
No 45
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=96.39 E-value=0.00097 Score=69.75 Aligned_cols=155 Identities=23% Similarity=0.237 Sum_probs=113.2
Q ss_pred HHhhCccEEEecCCCCCC--CChHHHHHHHHHHHhCCCCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHH
Q 008464 209 YAEWGVDFVKHDCVFGDD--LDINEISFVSEVLKELDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAA 286 (564)
Q Consensus 209 ~a~wGvdylK~D~~~~~~--~~~~~y~~m~~al~~~gr~i~~s~s~~~~~~p~~~~~~~~~~n~~Ris~D~~~~W~~~~~ 286 (564)
+.+|++.+.++||..++. ++..-|..|.+++.+-| ...+.+.||.-| |.|..+.+
T Consensus 37 w~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG---------------------~~~vGY~yi~iD--DCW~e~~R 93 (414)
T KOG2366|consen 37 WNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEG---------------------LADVGYEYINID--DCWSEVTR 93 (414)
T ss_pred cccccceeeecccccCCccchhHHHHHHHHHHHHHhH---------------------HHhcCcEEEech--hhhhhhcc
Confidence 689999999999987654 44455777887776554 123567788877 78998877
Q ss_pred HhhhhhhhhhhhhhcccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCH
Q 008464 287 HFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDE 366 (564)
Q Consensus 287 ~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~~g~~~~~~lT~~E~rt~~slwa~~~sPLiig~Dl~~~~~ 366 (564)
..+. +--+....+++-......|.+-++|-+|.+.|.|. ..+ ++..+ +.+..|..+..+...|.|+.+++.
T Consensus 94 d~~g-rLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~-----~TC-~g~PG--S~~~e~~DA~tFA~WgvDylKlD~ 164 (414)
T KOG2366|consen 94 DSDG-RLVADPSRFPSGIKALADYVHSKGLKLGIYSDAGN-----FTC-AGYPG--SLGHEESDAKTFADWGVDYLKLDG 164 (414)
T ss_pred CCcc-ccccChhhcccchhhhhhchhhcCCceeeeeccCc-----hhh-ccCCc--ccchhhhhhhhhHhhCCcEEeccc
Confidence 6554 22222222221111235688999999999988662 234 55555 888999999999999999999998
Q ss_pred hHHhccCChhhhhhccCCCCCCccceecc
Q 008464 367 TTYSLITNPTVLEINTFSSNNKEFPYIIG 395 (564)
Q Consensus 367 ~~l~lL~N~eliainqd~~~~~~~~~~~~ 395 (564)
-....+++++...+.-+.+.+.++..+.+
T Consensus 165 C~~~~~~~~~~Yp~ms~aLN~tGrpi~yS 193 (414)
T KOG2366|consen 165 CFNNLITMPEGYPIMSRALNNTGRPIFYS 193 (414)
T ss_pred cccccccccccchhHHHHHhccCCceEEE
Confidence 88899999999999998888777665655
No 46
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=95.89 E-value=0.23 Score=52.00 Aligned_cols=89 Identities=16% Similarity=0.241 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCcccccccccccccccc--CCCCceeecCCcH
Q 008464 119 GFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAW--MQHGFMSVNTKLG 196 (564)
Q Consensus 119 Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~--~~~~~~~lD~t~p 196 (564)
=|+.+++..|++||++=-|+..+.... ..+++... ++.|...+. ++..+.. ...+.+.|||.||
T Consensus 71 pL~~~I~eaHkrGlevHAW~~~~~~~~---~~~~~~~~---------~p~~~~~~~--~~~~~~~~~~~~~~~~lnP~~P 136 (311)
T PF02638_consen 71 PLEFMIEEAHKRGLEVHAWFRVGFNAP---DVSHILKK---------HPEWFAVNH--PGWVRTYEDANGGYYWLNPGHP 136 (311)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeecCCC---chhhhhhc---------CchhheecC--CCceeecccCCCCceEECCCCH
Confidence 399999999999999988874433211 11222211 222322110 1111111 0135689999999
Q ss_pred HHHHHHHHHHHH-HHhhCccEEEecC
Q 008464 197 AGRAFLRSLYQQ-YAEWGVDFVKHDC 221 (564)
Q Consensus 197 ~~~~~~~~~~~~-~a~wGvdylK~D~ 221 (564)
++++|+..+++- .+.+.||.|-+|.
T Consensus 137 eVr~~i~~~v~Eiv~~YdvDGIhlDd 162 (311)
T PF02638_consen 137 EVRDYIIDIVKEIVKNYDVDGIHLDD 162 (311)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 999999777765 5689999999994
No 47
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.68 E-value=0.13 Score=53.97 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCC------CC-CChHHH
Q 008464 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSR------GG-KGFTEV 123 (564)
Q Consensus 51 ~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~------~~-~Glk~l 123 (564)
+++.+.+.++.+ +.-+.+.++||= .|.+|.+..+ .+-|..+ .. ..++.|
T Consensus 11 ~~~~~~~~~~~i----~~t~lNavVIDv-------------------Kdd~G~i~y~-s~~~~~~~~ga~~~~i~D~~~l 66 (316)
T PF13200_consen 11 SPERLDKLLDLI----KRTELNAVVIDV-------------------KDDDGNITYD-SQVPLAREIGAVKPYIKDLKAL 66 (316)
T ss_pred CHHHHHHHHHHH----HhcCCceEEEEE-------------------ecCCceEEec-CCCchhhhcccccccccCHHHH
Confidence 345566666654 566778899982 2344554432 1111110 00 269999
Q ss_pred HHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCC-CCceeecCCcHHHHHHH
Q 008464 124 AKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQ-HGFMSVNTKLGAGRAFL 202 (564)
Q Consensus 124 ad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~-~~~~~lD~t~p~~~~~~ 202 (564)
++.+|++|+.+=-++.-|-..- +.. .+++|..+... .-.|.. .+..++||.++++.+|.
T Consensus 67 ~~~l~e~gIY~IARIv~FkD~~-------la~---------~~pe~av~~~~----G~~w~d~~~~~WvnP~~~evw~Y~ 126 (316)
T PF13200_consen 67 VKKLKEHGIYPIARIVVFKDPV-------LAE---------AHPEWAVKTKD----GSVWRDNEGEAWVNPYSKEVWDYN 126 (316)
T ss_pred HHHHHHCCCEEEEEEEEecChH-------Hhh---------hChhhEEECCC----CCcccCCCCCccCCCCCHHHHHHH
Confidence 9999999998866666553221 110 02222221100 011222 24569999999999999
Q ss_pred HHHHHHHHhhCccEEEecCC
Q 008464 203 RSLYQQYAEWGVDFVKHDCV 222 (564)
Q Consensus 203 ~~~~~~~a~wGvdylK~D~~ 222 (564)
-.+++..++.|||=|-+|++
T Consensus 127 i~IA~Eaa~~GFdEIqfDYI 146 (316)
T PF13200_consen 127 IDIAKEAAKLGFDEIQFDYI 146 (316)
T ss_pred HHHHHHHHHcCCCEEEeeee
Confidence 99999999999999999986
No 48
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.30 E-value=0.26 Score=56.49 Aligned_cols=133 Identities=16% Similarity=0.198 Sum_probs=71.9
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcc
Q 008464 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGIS 143 (564)
Q Consensus 64 ~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~ 143 (564)
..|+++|++.|.|=--.+.... .+.| ++..+...++ .+|.+ ...||.|++.+|++||++=|-+-+.-
T Consensus 164 dyl~~LGvt~i~L~Pi~e~~~~-----~~wG---Y~~~~y~~~~-~~~Gt---~~dlk~lV~~~H~~Gi~VilD~V~NH- 230 (613)
T TIGR01515 164 PYVKELGFTHIELLPVAEHPFD-----GSWG---YQVTGYYAPT-SRFGT---PDDFMYFVDACHQAGIGVILDWVPGH- 230 (613)
T ss_pred HHHHHcCCCEEEECCcccCCCC-----CCCC---CCcccCcccc-cccCC---HHHHHHHHHHHHHCCCEEEEEecccC-
Confidence 3478999999988221111000 0011 1222344455 35543 13699999999999999977665421
Q ss_pred ccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecCC
Q 008464 144 TQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (564)
Q Consensus 144 ~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (564)
+.... ..+. .+.. .+.|...+.. ......| +...+|..+|++++|+-..++.+. ++|||.+++|..
T Consensus 231 -~~~~~-~~~~------~~~~-~~~y~~~~~~-~~~~~~w---~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v 297 (613)
T TIGR01515 231 -FPKDD-HGLA------EFDG-TPLYEHKDPR-DGEHWDW---GTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAV 297 (613)
T ss_pred -cCCcc-chhh------ccCC-CcceeccCCc-cCcCCCC---CCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCH
Confidence 11110 0000 0100 0111111110 0001112 224689999999999988887765 799999999974
No 49
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.014 Score=61.66 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=62.4
Q ss_pred eeeccCCCCCCC--CcEeecCC-CCccEEEEEe----ecCCCceEeeCCCCccCCCcceeeEEeccC-CCCCCceEECCC
Q 008464 460 LCLYKSRALLSS--DGEMIYKQ-QYQGKVHLLA----SKGVGVCLDASPKWKLTSKELRRGSFSKCK-RDANQMWQLNPS 531 (564)
Q Consensus 460 ~Cld~~~~~~a~--~~~~c~g~-~~Q~w~~~~~----~~~~g~CLd~~~~~~~~~G~t~~v~~~~C~-g~~nQ~W~~~~~ 531 (564)
+|||..+..+.. .+..|.+. .||+|.+.+. ....++||++... +.| .+|.+-.|. +.+.|+|... +
T Consensus 442 ~Cl~s~~~~~~~~~gl~~C~~s~~nqqwa~~~t~~~~~~~~elCL~v~~~---~pg--~~v~l~~C~~~e~~q~~v~~-~ 515 (559)
T KOG3738|consen 442 NCLDSQGQNSQEALGLASCHGSGGNQQWAFLRTSTQLITHRELCLAVGSN---TPG--SPVALVPCGNNETKQRWVEL-G 515 (559)
T ss_pred hhhhhhhcccccCcceeecccCCCCcchhhhhhhhhHHHHHhhhheeecC---CCC--CeEEEEecCCCCCceEEEec-C
Confidence 799987654433 68999887 7899987432 2346899999764 357 389999995 4578888654 4
Q ss_pred CcEEeCCCCceEEecCCc
Q 008464 532 GALISSYSGLCATVNLVK 549 (564)
Q Consensus 532 G~l~n~~SG~Cldv~~~~ 549 (564)
|-|....|++|||.....
T Consensus 516 ~~l~h~~s~KOGd~~~~g 533 (559)
T KOG3738|consen 516 GHLLHAGSHLCLDNPLKG 533 (559)
T ss_pred CchhcccccceeccccCC
Confidence 678889999999997554
No 50
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.15 Score=57.62 Aligned_cols=146 Identities=17% Similarity=0.210 Sum_probs=89.5
Q ss_pred ccccCccCCCCCCCCce---Ee--ccccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcc
Q 008464 22 VSSISEAVPVRASSPPR---GW--NSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFD 96 (564)
Q Consensus 22 ~~~~~~~~~~~~~~pPm---GW--nSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~ 96 (564)
+-++-++-.|..+.||+ |+ |-|| -.+|++|+++-.-|.+. +.-|+.|-||=-.
T Consensus 340 v~~qyaaLTG~~~LPplFsiGYHQcRWN----Y~DE~DV~~Vd~~FDeh--diP~DviWLDIEh---------------- 397 (915)
T KOG1066|consen 340 VFRQYAALTGTTPLPPLFSIGYHQCRWN----YNDEEDVLTVDQGFDEH--DIPYDVIWLDIEH---------------- 397 (915)
T ss_pred HHHHHHhhcCCCCCCchhhcchhhcccc----ccchhhhhhhhcCcccc--CCccceEEEeeee----------------
Confidence 33444555688888985 32 3333 14666676654444433 2346888887332
Q ss_pred cccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccc
Q 008464 97 VIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGL 176 (564)
Q Consensus 97 ~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~ 176 (564)
.|.--+.+.|+.+||+ -+.|.++|.+||-|+=.=++|-+.. +++--|..+.+ ...|..||...
T Consensus 398 -tdgKrYFTWDk~~FP~------P~~Ml~kLa~kgRklV~IvDPHIKk---D~~Y~v~ke~~-------~~gy~VKd~~G 460 (915)
T KOG1066|consen 398 -TDGKRYFTWDKHKFPN------PKDMLKKLASKGRKLVTIVDPHIKK---DDGYFVHKEAK-------DKGYYVKDRDG 460 (915)
T ss_pred -cCCceeEeeccccCCC------HHHHHHHHHhcCCceEEEeCccccc---CCCeEEhHHhh-------hCCeEEEecCC
Confidence 2333469999999996 8999999999999998888886632 12222211110 12234444333
Q ss_pred ccccccc-CCCCceeecCCcHHHHHHHHHHHH
Q 008464 177 KERACAW-MQHGFMSVNTKLGAGRAFLRSLYQ 207 (564)
Q Consensus 177 ~~~~~~~-~~~~~~~lD~t~p~~~~~~~~~~~ 207 (564)
.+.. +| +|+..-.+|+.+|.+++|..+.++
T Consensus 461 ~Dye-G~CWPG~S~yiDf~nP~~r~wW~~~fa 491 (915)
T KOG1066|consen 461 SDYE-GWCWPGSSSYIDFINPEARKWWKSQFA 491 (915)
T ss_pred Cccc-ccccCCCcccccccCHHHHHHHhhhcc
Confidence 3321 22 245567899999999999987654
No 51
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.16 Score=57.15 Aligned_cols=90 Identities=21% Similarity=0.207 Sum_probs=63.1
Q ss_pred ceecccCCCC-CcccccccccccCcCceEEEEecCCCCCCCCeeeccCCCCCCCCcEeecCCCCccEEE----EEeecCC
Q 008464 419 HVLGLTSCKD-PKANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVH----LLASKGV 493 (564)
Q Consensus 419 ~~lGL~~~~~-~~~dlWt~~~~~~~~g~i~~~~~~~~~~~~~~Cld~~~~~~a~~~~~c~g~~~Q~w~~----~~~~~~~ 493 (564)
..+|+..|.. ...|.|+..+ .+.|.... .|+++...+. .++..|....+|.|.+ .+....+
T Consensus 478 ~~~~~~~Ch~~~~~Q~~~yT~----~~eir~~~---------~cl~~~~~~~-v~l~~C~~~~~q~w~~~~~~~i~~~~s 543 (578)
T KOG3736|consen 478 MAVGLYPCHGPGGNQYFPYTK----QGEIRIGD---------LCLDVDDAGK-VTLYDCHKMGNQLWHYDKDGTLYHRNS 543 (578)
T ss_pred CcceEecCCCccccccccccC----CcceEECC---------EEeccccCCc-eEEEecccccccceEEcCCCceEcCCC
Confidence 5788888864 4458888765 45666542 6998852222 5899997777888876 3344568
Q ss_pred CceEeeCCCCccCCCcceeeEEeccCCCC-CCceEEC
Q 008464 494 GVCLDASPKWKLTSKELRRGSFSKCKRDA-NQMWQLN 529 (564)
Q Consensus 494 g~CLd~~~~~~~~~G~t~~v~~~~C~g~~-nQ~W~~~ 529 (564)
|+||++.... + .+.+..|+... .|||.+.
T Consensus 544 g~CL~~~~~~---~----~~~l~~c~~~~~~Q~W~~~ 573 (578)
T KOG3736|consen 544 GKCLEAAVDK---N----GLILVACDPSDPTQQWLFE 573 (578)
T ss_pred CccccccCCC---C----CceEeecCCCCCcceEEEE
Confidence 9999987552 1 27788898764 9999874
No 52
>PLN02361 alpha-amylase
Probab=93.17 E-value=1.6 Score=47.43 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=32.2
Q ss_pred CceeecCCcHHHHHHHHHHHHHHHh-hCccEEEecCCCC
Q 008464 187 GFMSVNTKLGAGRAFLRSLYQQYAE-WGVDFVKHDCVFG 224 (564)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~~a~-wGvdylK~D~~~~ 224 (564)
++.-||.++|.+++++...++.+++ .|||-+++|+..+
T Consensus 145 ~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~ 183 (401)
T PLN02361 145 GVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKG 183 (401)
T ss_pred cCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 3457999999999999888887775 9999999998753
No 53
>PLN00196 alpha-amylase; Provisional
Probab=92.53 E-value=1.5 Score=48.03 Aligned_cols=35 Identities=11% Similarity=-0.031 Sum_probs=30.4
Q ss_pred ceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecCC
Q 008464 188 FMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (564)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (564)
+.-||.++|.+++++....+.+. +.|||.+++|+.
T Consensus 170 lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~a 205 (428)
T PLN00196 170 APDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFA 205 (428)
T ss_pred CCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehh
Confidence 34699999999999988887775 699999999986
No 54
>PRK14706 glycogen branching enzyme; Provisional
Probab=92.34 E-value=0.8 Score=52.71 Aligned_cols=141 Identities=16% Similarity=0.242 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeE
Q 008464 55 FLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKF 134 (564)
Q Consensus 55 i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~ 134 (564)
+.+.++.+-.-|+++||+.|.|=---+.. +..+.| ++..+...|+ .+|-. ...||.|++.+|++|+++
T Consensus 166 y~~~~~~l~~ylk~lG~t~velmPv~e~~-----~~~~wG---Y~~~~~~~~~-~~~g~---~~~~~~lv~~~H~~gi~V 233 (639)
T PRK14706 166 YRELAHRLGEYVTYMGYTHVELLGVMEHP-----FDGSWG---YQVTGYYAPT-SRLGT---PEDFKYLVNHLHGLGIGV 233 (639)
T ss_pred HHHHHHHHHHHHHHcCCCEEEccchhcCC-----CCCCCC---cCcccccccc-cccCC---HHHHHHHHHHHHHCCCEE
Confidence 34444444446889999998762211110 000111 1222334455 35532 137999999999999998
Q ss_pred EEEeecCccccccCCCCcccccccCCCcccCCC-ccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHH-Hhh
Q 008464 135 GIHVMRGISTQAFNADTPILDTLKGGAYEDSGR-QWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AEW 212 (564)
Q Consensus 135 Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~-~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~w 212 (564)
=|=+-+.- ++. +. .-+. .+. |. .|...|-. +.....| +...+|..+|++++|+-..++.+ .+.
T Consensus 234 ilD~v~nH-~~~-~~-~~l~------~~d--g~~~y~~~~~~-~g~~~~w---~~~~~~~~~~eVr~~l~~~~~~W~~e~ 298 (639)
T PRK14706 234 ILDWVPGH-FPT-DE-SGLA------HFD--GGPLYEYADPR-KGYHYDW---NTYIFDYGRNEVVMFLIGSALKWLQDF 298 (639)
T ss_pred EEEecccc-cCc-ch-hhhh------ccC--CCcceeccCCc-CCcCCCC---CCcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 65433311 110 00 0000 011 11 11111100 0111223 22358999999999997777775 589
Q ss_pred CccEEEecCC
Q 008464 213 GVDFVKHDCV 222 (564)
Q Consensus 213 GvdylK~D~~ 222 (564)
+||.+++|..
T Consensus 299 ~iDG~R~Dav 308 (639)
T PRK14706 299 HVDGLRVDAV 308 (639)
T ss_pred CCCeEEEeee
Confidence 9999999964
No 55
>PLN02784 alpha-amylase
Probab=92.15 E-value=2 Score=50.48 Aligned_cols=36 Identities=19% Similarity=0.026 Sum_probs=31.0
Q ss_pred ceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCC
Q 008464 188 FMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVF 223 (564)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~ 223 (564)
+--||.++|.+++.+...++.+. +.|||.+++|+.-
T Consensus 640 lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVK 676 (894)
T PLN02784 640 APNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVR 676 (894)
T ss_pred CCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccC
Confidence 34789999999999988888775 7999999999973
No 56
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=92.05 E-value=1.9 Score=39.42 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=69.8
Q ss_pred HHHhhccCCceEEEeccc--ccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEee
Q 008464 62 ISQRLRPHGYEYVVVDYL--WYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVM 139 (564)
Q Consensus 62 ~~~gl~~~Gy~~i~iDdg--W~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~ 139 (564)
+.+-|+.+|.+.|+|..+ +--. |.. .+.|...|.-. + .=|+.+++.+|++|+|+=+|++
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~a-----yYP-------t~~~~~hp~L~-~------Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYA-----YYP-------TKVGPRHPGLK-R------DLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEE-----Ecc-------CCCCcCCCCCC-c------CHHHHHHHHHHHCCCEEEEEEe
Confidence 444578888999999654 2211 110 11243333322 1 1379999999999999999998
Q ss_pred cCccccccCCCCcccccccCCCcccCCCcccccccccccc-ccccCCCCceeecCCcHHHHHHHHHHH-HHHHhhCccEE
Q 008464 140 RGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKER-ACAWMQHGFMSVNTKLGAGRAFLRSLY-QQYAEWGVDFV 217 (564)
Q Consensus 140 pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~-~~~~~~~~~~~lD~t~p~~~~~~~~~~-~~~a~wGvdyl 217 (564)
.++..- .|. .+|+|..+|...... .-.....+++.+-+..|-. +|+...+ +.+..+.+|.|
T Consensus 66 ~~~d~~---------------~~~-~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~-e~~~~~i~Ei~~~y~~DGi 128 (132)
T PF14871_consen 66 FSWDED---------------AAE-RHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYR-EFLLEQIREILDRYDVDGI 128 (132)
T ss_pred eecChH---------------HHH-hCCceeeECCCCCCcCCCCcCCCCceecCCCccHH-HHHHHHHHHHHHcCCCCEE
Confidence 864321 122 277888887654310 0011111344455555543 5664444 44556888888
Q ss_pred Eec
Q 008464 218 KHD 220 (564)
Q Consensus 218 K~D 220 (564)
=+|
T Consensus 129 F~D 131 (132)
T PF14871_consen 129 FFD 131 (132)
T ss_pred Eec
Confidence 666
No 57
>PLN02960 alpha-amylase
Probab=91.40 E-value=3.3 Score=48.95 Aligned_cols=143 Identities=14% Similarity=0.204 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeE
Q 008464 55 FLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKF 134 (564)
Q Consensus 55 i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~ 134 (564)
+.+.++.+-..|+++||+.|.|=---+... ..+.| ++..+...++ .+|-. ...||.|++.+|++|+++
T Consensus 415 f~~~~e~~LdYLk~LGvt~IeLmPv~e~~~-----~~swG---Y~~~~yfa~~-~~yGt---p~dfk~LVd~aH~~GI~V 482 (897)
T PLN02960 415 FKEFTQKVLPHVKKAGYNAIQLIGVQEHKD-----YSSVG---YKVTNFFAVS-SRFGT---PDDFKRLVDEAHGLGLLV 482 (897)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCC-----CCCCC---CCcccCCCcc-cccCC---HHHHHHHHHHHHHCCCEE
Confidence 333333333457899999988732211100 00011 1222333344 23432 137999999999999998
Q ss_pred EEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHH-HhhC
Q 008464 135 GIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AEWG 213 (564)
Q Consensus 135 Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wG 213 (564)
=|=+-+. .++.+...-+ ..|..+...|...+- ......| +...+|..+|++++|+-+.++.+ .+.+
T Consensus 483 ILDvV~N--H~~~d~~~~L------~~FDG~~~~Yf~~~~--~g~~~~W---G~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 483 FLDIVHS--YAAADEMVGL------SLFDGSNDCYFHSGK--RGHHKRW---GTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred EEEeccc--ccCCccccch------hhcCCCccceeecCC--CCccCCC---CCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 6644332 1111100000 011110001222110 0111123 12357999999999997777775 5899
Q ss_pred ccEEEecCC
Q 008464 214 VDFVKHDCV 222 (564)
Q Consensus 214 vdylK~D~~ 222 (564)
||.+++|.+
T Consensus 550 IDGfR~DAV 558 (897)
T PLN02960 550 VDGFQFHSL 558 (897)
T ss_pred CCceeeccc
Confidence 999999975
No 58
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=90.56 E-value=4 Score=44.09 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=20.2
Q ss_pred hHHHHHHHHHcCCeEEEEeec
Q 008464 120 FTEVAKKVHAMGLKFGIHVMR 140 (564)
Q Consensus 120 lk~lad~ih~~Glk~Giy~~p 140 (564)
+++|++.||+.|||||+|+.+
T Consensus 130 v~el~~A~rk~Glk~G~Y~S~ 150 (384)
T smart00812 130 VGELADAVRKRGLKFGLYHSL 150 (384)
T ss_pred HHHHHHHHHHcCCeEEEEcCH
Confidence 899999999999999999987
No 59
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.78 E-value=3 Score=48.62 Aligned_cols=142 Identities=15% Similarity=0.193 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeE
Q 008464 55 FLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKF 134 (564)
Q Consensus 55 i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~ 134 (564)
+.+.++.+-.-|+++|++.|.|=--.+... ..+.| ++..|...++ .+|.. ...||.|++.+|++|+++
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~-----~~~wG---Y~~~~~~a~~-~~~G~---~~dfk~lV~~~H~~Gi~V 335 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPF-----GGSWG---YQPLGLYAPT-ARHGS---PDGFAQFVDACHRAGIGV 335 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCC-----CCCCC---CCCCcCCccC-cccCC---HHHHHHHHHHHHHCCCEE
Confidence 344444444457899999887632211100 00111 1223444555 35653 137999999999999998
Q ss_pred EEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHH-HhhC
Q 008464 135 GIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AEWG 213 (564)
Q Consensus 135 Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wG 213 (564)
=|=+-|. .+.... ..+. .|... ..|...|.. ......| +.+.+|..+|++++|+-..+..+ .+.|
T Consensus 336 IlD~V~n--H~~~d~-~~l~------~fdg~-~~Ye~~d~~-~g~~~~W---~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 336 ILDWVSA--HFPDDA-HGLA------QFDGA-ALYEHADPR-EGMHRDW---NTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred EEEeccc--cCCccc-cccc------cCCCc-cccccCCCc-CCccCCC---CCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 6644442 121110 0000 11100 011111100 0011122 12467999999999997777665 5799
Q ss_pred ccEEEecCC
Q 008464 214 VDFVKHDCV 222 (564)
Q Consensus 214 vdylK~D~~ 222 (564)
||.+++|.+
T Consensus 402 IDG~R~DAv 410 (730)
T PRK12568 402 LDGLRVDAV 410 (730)
T ss_pred ceEEEEcCH
Confidence 999999964
No 60
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=89.54 E-value=6.5 Score=44.46 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=31.3
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCC
Q 008464 189 MSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF 223 (564)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~ 223 (564)
.-||.++|++++++...++.+.+-|||.+++|...
T Consensus 162 pdln~~np~v~~~i~~~~~~W~~~giDGfRlDa~~ 196 (543)
T TIGR02403 162 ADLNWENPEVREELKDVVNFWRDKGVDGFRLDVIN 196 (543)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeeh
Confidence 46899999999999999999888999999999653
No 61
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=89.50 E-value=3.8 Score=46.99 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=42.0
Q ss_pred eecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEE
Q 008464 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVY 248 (564)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~~ 248 (564)
-++..+|.+++|+-..++.+. +.|||.+++|... .++.+-.+.+++++++....+++
T Consensus 288 ~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~--~~~~~~~~~~~~~~~~~~p~~~l 345 (605)
T TIGR02104 288 DTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMG--IHDIETMNEIRKALNKIDPNILL 345 (605)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechh--cCCHHHHHHHHHHHHhhCCCeEE
Confidence 367789999999977777765 6999999999753 23445567778888776655544
No 62
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=89.42 E-value=1.7 Score=49.65 Aligned_cols=136 Identities=17% Similarity=0.235 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhhccCCceEEEe--------cccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHH
Q 008464 54 EFLQSAEIISQRLRPHGYEYVVV--------DYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAK 125 (564)
Q Consensus 54 ~i~~~ad~~~~gl~~~Gy~~i~i--------DdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad 125 (564)
...+.|+.+-.-|+++||+.|.| |-.|-- +..|..-|. .||-+ ..+||.|+|
T Consensus 162 ~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGY----------------q~~g~yAp~-sryGt---Pedfk~fVD 221 (628)
T COG0296 162 GYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGY----------------QGTGYYAPT-SRYGT---PEDFKALVD 221 (628)
T ss_pred CHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCC----------------Ccceecccc-ccCCC---HHHHHHHHH
Confidence 34455554445578999999987 444422 223333344 56632 138999999
Q ss_pred HHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHH
Q 008464 126 KVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSL 205 (564)
Q Consensus 126 ~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~ 205 (564)
.+|++|+-+=|=+-|+=. + ++..=+ ..|... .-+...|.- +...-.|. ...-|..+++|+.|+-.-
T Consensus 222 ~aH~~GIgViLD~V~~HF-~---~d~~~L-----~~fdg~-~~~e~~~~~-~~~~~~Wg---~~i~~~gr~EVR~Fll~n 287 (628)
T COG0296 222 AAHQAGIGVILDWVPNHF-P---PDGNYL-----ARFDGT-FLYEHEDPR-RGEHTDWG---TAIFNYGRNEVRNFLLAN 287 (628)
T ss_pred HHHHcCCEEEEEecCCcC-C---CCcchh-----hhcCCc-cccccCCcc-cccCCCcc---cchhccCcHHHHHHHHHH
Confidence 999999877554444321 1 110000 011110 111222211 11112232 223334499999998554
Q ss_pred HH-HHHhhCccEEEecCCC
Q 008464 206 YQ-QYAEWGVDFVKHDCVF 223 (564)
Q Consensus 206 ~~-~~a~wGvdylK~D~~~ 223 (564)
+. -+.++.||.|++|.+.
T Consensus 288 al~Wl~~yHiDGlRvDAV~ 306 (628)
T COG0296 288 ALYWLEEYHIDGLRVDAVA 306 (628)
T ss_pred HHHHHHHhCCcceeeehhh
Confidence 44 4778999999999863
No 63
>PRK14705 glycogen branching enzyme; Provisional
Probab=89.28 E-value=2.1 Score=52.62 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=70.8
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcc
Q 008464 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGIS 143 (564)
Q Consensus 64 ~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~ 143 (564)
..|+++||+.|.|==-.+... ..+.| ++..+...|+ .+|-. ..+||.|++.+|++||++=|=+-|.=
T Consensus 773 dYlk~LGvt~IeLmPv~e~p~-----~~swG---Y~~~~y~ap~-~ryGt---~~dfk~lVd~~H~~GI~VILD~V~nH- 839 (1224)
T PRK14705 773 DYVKWLGFTHVEFMPVAEHPF-----GGSWG---YQVTSYFAPT-SRFGH---PDEFRFLVDSLHQAGIGVLLDWVPAH- 839 (1224)
T ss_pred HHHHHhCCCEEEECccccCCC-----CCCCC---CCccccCCcC-cccCC---HHHHHHHHHHHHHCCCEEEEEecccc-
Confidence 447889999987621111100 00011 1223344444 34532 13799999999999999876554421
Q ss_pred ccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHH-HHhhCccEEEecCC
Q 008464 144 TQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ-YAEWGVDFVKHDCV 222 (564)
Q Consensus 144 ~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~-~a~wGvdylK~D~~ 222 (564)
++ ++..-+. .|.. .+.|...|... .....| +-..+|..+|+++.|+-..+.. +.+++||.|.+|.+
T Consensus 840 ~~---~d~~~l~-----~fdg-~~~y~~~d~~~-g~~~~W---g~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav 906 (1224)
T PRK14705 840 FP---KDSWALA-----QFDG-QPLYEHADPAL-GEHPDW---GTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAV 906 (1224)
T ss_pred CC---cchhhhh-----hcCC-CcccccCCccc-CCCCCC---CCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeeh
Confidence 11 0100000 0110 01122222110 011122 2246899999999999766666 46799999999974
No 64
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.90 E-value=8.5 Score=41.89 Aligned_cols=120 Identities=17% Similarity=0.256 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCcccc--ccccccccccccCCCCceeecCCcH
Q 008464 119 GFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRA--KDIGLKERACAWMQHGFMSVNTKLG 196 (564)
Q Consensus 119 Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~--~Di~~~~~~~~~~~~~~~~lD~t~p 196 (564)
=|+.+++..|++||++==|..++... .+.+++-.. ++.|.. ++-.......+|. .-.+|||-||
T Consensus 116 pLa~~I~~AHkr~l~v~aWf~~~~~a---~~~s~~~~~---------~p~~~~~~~~~~~~~~~~~~~--~~~~ldPg~P 181 (418)
T COG1649 116 PLAFVIAEAHKRGLEVHAWFNPYRMA---PPTSPLTKR---------HPHWLTTKRPGWVYVRHQGWG--KRVWLDPGIP 181 (418)
T ss_pred hHHHHHHHHHhcCCeeeechhhcccC---CCCChhHhh---------CCCCcccCCCCeEEEecCCce--eeeEeCCCCh
Confidence 38999999999999999999987632 122332211 111111 1100000111111 2579999999
Q ss_pred HHHHHHHHHH-HHHHhhCccEEEecC--CCC--CCCC------------------hH---H---------HHHHHHHHHh
Q 008464 197 AGRAFLRSLY-QQYAEWGVDFVKHDC--VFG--DDLD------------------IN---E---------ISFVSEVLKE 241 (564)
Q Consensus 197 ~~~~~~~~~~-~~~a~wGvdylK~D~--~~~--~~~~------------------~~---~---------y~~m~~al~~ 241 (564)
++++||.+++ +..+.+-||-|-+|- .+. .+++ +. + +..+..++++
T Consensus 182 evq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKa 261 (418)
T COG1649 182 EVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKA 261 (418)
T ss_pred HHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 9999996666 667889999999993 332 1111 12 1 1235556777
Q ss_pred CCCCeEEEcCC
Q 008464 242 LDRPIVYSLSP 252 (564)
Q Consensus 242 ~gr~i~~s~s~ 252 (564)
.-.++.|++++
T Consensus 262 vKp~v~~svsp 272 (418)
T COG1649 262 VKPNVKFSVSP 272 (418)
T ss_pred hCCCeEEEEcc
Confidence 88889999998
No 65
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.89 E-value=7.2 Score=45.72 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEE
Q 008464 56 LQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFG 135 (564)
Q Consensus 56 ~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~G 135 (564)
...++.+-.-|+++|++.|.|==-.+.... .+.| +|..+...++ .+|-. ...||.|++.+|++||++=
T Consensus 265 ~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~-----~~~G---Y~~~~y~ai~-~~~Gt---~~dfk~lV~~~H~~Gi~Vi 332 (726)
T PRK05402 265 RELADQLIPYVKEMGFTHVELLPIAEHPFD-----GSWG---YQPTGYYAPT-SRFGT---PDDFRYFVDACHQAGIGVI 332 (726)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCC-----CCCC---CCcccCCCcC-cccCC---HHHHHHHHHHHHHCCCEEE
Confidence 344443334578999999877322221100 0001 1222333444 23432 1369999999999999975
Q ss_pred EEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHHH-hhCc
Q 008464 136 IHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGV 214 (564)
Q Consensus 136 iy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGv 214 (564)
|=+.+. .++.. ...+. .|... ..|...|... .....| +...+|..+|++++|+-..++.+. +.||
T Consensus 333 lD~V~N--H~~~~-~~~~~------~~~~~-~~y~~~~~~~-~~~~~w---~~~~~n~~~~~v~~~l~~~~~~W~~e~~i 398 (726)
T PRK05402 333 LDWVPA--HFPKD-AHGLA------RFDGT-ALYEHADPRE-GEHPDW---GTLIFNYGRNEVRNFLVANALYWLEEFHI 398 (726)
T ss_pred EEECCC--CCCCC-ccchh------ccCCC-cceeccCCcC-CccCCC---CCccccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 533331 11111 00000 11100 0111111100 011112 123679999999999977777765 6999
Q ss_pred cEEEecCC
Q 008464 215 DFVKHDCV 222 (564)
Q Consensus 215 dylK~D~~ 222 (564)
|.+.+|.+
T Consensus 399 DG~R~D~v 406 (726)
T PRK05402 399 DGLRVDAV 406 (726)
T ss_pred cEEEECCH
Confidence 99999964
No 66
>PRK12313 glycogen branching enzyme; Provisional
Probab=87.36 E-value=11 Score=43.53 Aligned_cols=133 Identities=18% Similarity=0.232 Sum_probs=69.5
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcc
Q 008464 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGIS 143 (564)
Q Consensus 64 ~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~ 143 (564)
..|+++|++.|.|=--++.... .+.| ++..+...++ .+|-. ...||.|++.+|++||++=|=+.+.
T Consensus 178 ~yl~~LGv~~i~L~Pi~~~~~~-----~~~G---Y~~~~y~~i~-~~~Gt---~~d~k~lv~~~H~~Gi~VilD~V~n-- 243 (633)
T PRK12313 178 PYVKEMGYTHVEFMPLMEHPLD-----GSWG---YQLTGYFAPT-SRYGT---PEDFMYLVDALHQNGIGVILDWVPG-- 243 (633)
T ss_pred HHHHHcCCCEEEeCchhcCCCC-----CCCC---CCCcCcCcCC-CCCCC---HHHHHHHHHHHHHCCCEEEEEECCC--
Confidence 3478899999877433222100 0011 1222334444 24432 1369999999999999985533331
Q ss_pred ccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecCC
Q 008464 144 TQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (564)
Q Consensus 144 ~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (564)
.+..+ ..-+ ..|... +.|...|-. ......|. ...+|..+|++++|+-..++.+. +.|||.+++|.+
T Consensus 244 H~~~~--~~~~-----~~~~~~-~~~~~~~~~-~~~~~~w~---~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~ 311 (633)
T PRK12313 244 HFPKD--DDGL-----AYFDGT-PLYEYQDPR-RAENPDWG---ALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAV 311 (633)
T ss_pred CCCCC--cccc-----cccCCC-cceeecCCC-CCcCCCCC---CcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCh
Confidence 11111 0000 001100 011111100 00001121 24689999999999977777765 689999999954
No 67
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=87.27 E-value=2.2 Score=43.44 Aligned_cols=102 Identities=22% Similarity=0.409 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHH
Q 008464 119 GFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAG 198 (564)
Q Consensus 119 Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~ 198 (564)
.|+.++++++++|.+.|||+..+. +|
T Consensus 76 ~l~~~~~~~~~~g~~~glwt~~~l-----------------------------~~------------------------- 101 (261)
T cd06596 76 NLKEVVDYLHANGVETGLWTQSGL-----------------------------RD------------------------- 101 (261)
T ss_pred HHHHHHHHHHHcCCccccccccch-----------------------------hh-------------------------
Confidence 599999999999999999954321 11
Q ss_pred HHHHHHHHHHHHhhCccEEEecCC-CCCCCCh--HHHHHHHHHHHh--CCCCeEEEcCCCCCCCchhhhhhcccccEEEE
Q 008464 199 RAFLRSLYQQYAEWGVDFVKHDCV-FGDDLDI--NEISFVSEVLKE--LDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRI 273 (564)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~-~~~~~~~--~~y~~m~~al~~--~gr~i~~s~s~~~~~~p~~~~~~~~~~n~~Ri 273 (564)
+.+....-|+.++|+|-- .+.++.. ...++..+++.+ -.||++++-|...- ...|+-. -
T Consensus 102 ------~~~ev~~~g~~~~k~Dv~w~g~gy~~~l~~~ka~yeg~~~~~~~RpfiltRsg~aG--------sQRy~~~--W 165 (261)
T cd06596 102 ------IAKEVGAAGVRARKTDVAWVGAGYSFALNGVKAAADGIESNSNARPFIVTVDGWAG--------TQRYAGI--W 165 (261)
T ss_pred ------hhhhhccCCceEEeccchhhccchhHHHHHHHHHHHHHHhCCCCCCEEEEecCccc--------cCCCCCc--c
Confidence 123456679999999943 1222322 222333333333 34899998874211 0233322 4
Q ss_pred ecCCCCChhhHHHHhhh
Q 008464 274 TGDDWDTWGDVAAHFNV 290 (564)
Q Consensus 274 s~D~~~~W~~~~~~~~~ 290 (564)
++|...+|+.+...+-.
T Consensus 166 sGD~~stWe~Lr~sI~~ 182 (261)
T cd06596 166 TGDQSGSWEYIRFHIPT 182 (261)
T ss_pred CCCCcCcHHHHHHHHHH
Confidence 78888999998876543
No 68
>PRK10785 maltodextrin glucosidase; Provisional
Probab=86.98 E-value=13 Score=42.66 Aligned_cols=174 Identities=14% Similarity=0.207 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHc
Q 008464 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (564)
Q Consensus 51 ~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~ 130 (564)
+-+.|.+-+|. |+++|++.|-|==-.+.....| +|..-....|| +|-. ...|+.|++.+|++
T Consensus 177 Dl~GI~~kLdY----L~~LGv~~I~L~Pif~s~s~hg----------Yd~~Dy~~iDp-~~Gt---~~df~~Lv~~aH~r 238 (598)
T PRK10785 177 DLDGISEKLPY----LKKLGVTALYLNPIFTAPSVHK----------YDTEDYRHVDP-QLGG---DAALLRLRHATQQR 238 (598)
T ss_pred CHHHHHHHHHH----HHHcCCCEEEeCCcccCCCCCC----------cCcccccccCc-ccCC---HHHHHHHHHHHHHC
Confidence 44666666766 5689998887643333211111 11112233442 3432 13699999999999
Q ss_pred CCeEEEEeecCccccccCCCCccccccc---CCCccc--C-CCccccccccccccccccCC-CCceeecCCcHHHHHHHH
Q 008464 131 GLKFGIHVMRGISTQAFNADTPILDTLK---GGAYED--S-GRQWRAKDIGLKERACAWMQ-HGFMSVNTKLGAGRAFLR 203 (564)
Q Consensus 131 Glk~Giy~~pg~~~~a~~~~s~i~~~~~---~~~y~~--~-g~~~~~~Di~~~~~~~~~~~-~~~~~lD~t~p~~~~~~~ 203 (564)
|||+=|=..+ .+|+. .++++.... .+.|.. + -.+|..-.- ....-.|.. ....-||..+|++++|+-
T Consensus 239 GikVilD~V~--NH~~~--~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~--~~~~~~w~g~~~lPdLN~~np~v~~~l~ 312 (598)
T PRK10785 239 GMRLVLDGVF--NHTGD--SHPWFDRHNRGTGGACHHPDSPWRDWYSFSD--DGRALDWLGYASLPKLDFQSEEVVNEIY 312 (598)
T ss_pred CCEEEEEECC--CcCCC--CCHHHHHhhccccccccCCCCCcceeeEECC--CCCcCCcCCCCcCccccCCCHHHHHHHH
Confidence 9997442222 22321 223322110 011111 0 011211000 000011221 223578999999999985
Q ss_pred ----HHHHHHHh--hCccEEEecCCCC--C-C---CChHHHHHHHHHHHhCCCCeEE
Q 008464 204 ----SLYQQYAE--WGVDFVKHDCVFG--D-D---LDINEISFVSEVLKELDRPIVY 248 (564)
Q Consensus 204 ----~~~~~~a~--wGvdylK~D~~~~--~-~---~~~~~y~~m~~al~~~gr~i~~ 248 (564)
++++.+.+ .|||.+++|.... . . ...+-.+.+++++++...+.++
T Consensus 313 ~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~l 369 (598)
T PRK10785 313 RGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYV 369 (598)
T ss_pred hhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEE
Confidence 36666554 6999999996532 1 0 1223347788888877665544
No 69
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=86.18 E-value=4.9 Score=42.70 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.1
Q ss_pred hHHHHHHHHHcCCeEEEEeecC
Q 008464 120 FTEVAKKVHAMGLKFGIHVMRG 141 (564)
Q Consensus 120 lk~lad~ih~~Glk~Giy~~pg 141 (564)
+++|++.||+.|||+|+|+.+.
T Consensus 140 v~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 140 VGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp HHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHcCCeEEEEecch
Confidence 7999999999999999999986
No 70
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=86.17 E-value=7.5 Score=45.56 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=71.8
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcc
Q 008464 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGIS 143 (564)
Q Consensus 64 ~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~pg~~ 143 (564)
..|+++||+.|.|=--++... ..+.| ++..+...++ .+|-. ...||.|++.+|++|+++=|=+-+.
T Consensus 258 ~ylk~LG~t~I~LmPi~e~~~-----~~~wG---Y~~~~~fa~~-~~~Gt---p~dlk~LVd~aH~~GI~VilDvV~n-- 323 (758)
T PLN02447 258 PRIKALGYNAVQLMAIQEHAY-----YGSFG---YHVTNFFAVS-SRSGT---PEDLKYLIDKAHSLGLRVLMDVVHS-- 323 (758)
T ss_pred HHHHHcCCCEEEECCccccCC-----CCCCC---cCcccCcccc-cccCC---HHHHHHHHHHHHHCCCEEEEEeccc--
Confidence 457899999998743332210 00111 1122233344 34532 1369999999999999986544332
Q ss_pred ccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecCC
Q 008464 144 TQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (564)
Q Consensus 144 ~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (564)
.+..+....+ ..|......|...+. ......| +...+|..+|+++.|+-+.++.+. +.+||.+++|.+
T Consensus 324 H~~~~~~~gl------~~fDg~~~~Yf~~~~--~g~~~~w---~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV 392 (758)
T PLN02447 324 HASKNTLDGL------NGFDGTDGSYFHSGP--RGYHWLW---DSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGV 392 (758)
T ss_pred cccccccccc------cccCCCCccccccCC--CCCcCcC---CCceecCCCHHHHHHHHHHHHHHHHHhCcccccccch
Confidence 1111100000 011111112322221 0111112 223689999999999987777765 699999999964
No 71
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=86.17 E-value=11 Score=42.60 Aligned_cols=103 Identities=15% Similarity=0.208 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCccc-CCCccccccccccccccccCCCCceeecCCcH-
Q 008464 119 GFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYED-SGRQWRAKDIGLKERACAWMQHGFMSVNTKLG- 196 (564)
Q Consensus 119 Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~-~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p- 196 (564)
.||.|++.+|++||++=|=+.+ ..+.. +. .|.. ..+ |..++ ..+.|.+ .+|..+|
T Consensus 161 e~k~lV~~aH~~Gi~VilD~V~--NH~~~--~~---------~~~~~~~~-y~~~~-----~~~~wg~----~~n~~~~~ 217 (542)
T TIGR02402 161 DLKALVDAAHGLGLGVILDVVY--NHFGP--EG---------NYLPRYAP-YFTDR-----YSTPWGA----AINFDGPG 217 (542)
T ss_pred HHHHHHHHHHHCCCEEEEEEcc--CCCCC--cc---------ccccccCc-cccCC-----CCCCCCC----ccccCCCc
Confidence 6999999999999997443222 12211 10 1110 011 21111 1122322 4788888
Q ss_pred --HHHHHHHHHHHHH-HhhCccEEEecCCCC-CCCC-hHHHHHHHHHHHhCCC
Q 008464 197 --AGRAFLRSLYQQY-AEWGVDFVKHDCVFG-DDLD-INEISFVSEVLKELDR 244 (564)
Q Consensus 197 --~~~~~~~~~~~~~-a~wGvdylK~D~~~~-~~~~-~~~y~~m~~al~~~gr 244 (564)
.+++|+-..++.+ .++|||.+.+|.... ...+ .+-.+.+++++++...
T Consensus 218 ~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p 270 (542)
T TIGR02402 218 SDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAA 270 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCC
Confidence 9999986666665 579999999996432 1111 1234667777776543
No 72
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=84.95 E-value=14 Score=41.69 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=31.0
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCccEEEecCC
Q 008464 189 MSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (564)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (564)
.-||.++|++++++...++.+.+.|||.+.+|.+
T Consensus 166 pdln~~np~vr~~l~~~~~~w~~~GvDGfRlDav 199 (539)
T TIGR02456 166 PDLNYDNPAVHDAVHDVMRFWLDLGVDGFRLDAV 199 (539)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecH
Confidence 3699999999999999999999999999999965
No 73
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=82.41 E-value=14 Score=41.99 Aligned_cols=34 Identities=32% Similarity=0.352 Sum_probs=31.1
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCccEEEecCC
Q 008464 189 MSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (564)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (564)
.-||..+|++++++...++.+.+.|||.+++|..
T Consensus 169 pdLn~~np~V~~~l~~~~~~W~~~GvDGfRlDa~ 202 (551)
T PRK10933 169 ADLNWENPAVRAELKKVCEFWADRGVDGLRLDVV 202 (551)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHCCCcEEEEcch
Confidence 4789999999999999999999999999999964
No 74
>PRK03705 glycogen debranching enzyme; Provisional
Probab=80.78 E-value=14 Score=42.82 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=29.0
Q ss_pred eecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCC
Q 008464 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVF 223 (564)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~ 223 (564)
.++..+|.+++|+...++.+. +.|||.+++|-..
T Consensus 305 ~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~ 339 (658)
T PRK03705 305 TLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLAT 339 (658)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHh
Confidence 588999999999987778765 6899999999643
No 75
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=80.77 E-value=6.2 Score=36.97 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=39.7
Q ss_pred eecCCCceEeeCCCCccCCCcceeeEEeccCCCC-CCceEE--CCCCc--EEeCCCCceEEecCCcCCCceEEEEEE
Q 008464 489 ASKGVGVCLDASPKWKLTSKELRRGSFSKCKRDA-NQMWQL--NPSGA--LISSYSGLCATVNLVKGNSSKQIFYMR 560 (564)
Q Consensus 489 ~~~~~g~CLd~~~~~~~~~G~t~~v~~~~C~g~~-nQ~W~~--~~~G~--l~n~~SG~Cldv~~~~~~~~~~~~~~~ 560 (564)
++...+.||.+.+ +| .+..-.|+-.. .|.|++ ..+|. |.|..+|+|+.+......+..--+|+.
T Consensus 57 ~n~~~~~CL~~~~-----~G---~~~~~~C~~~~~~q~F~iiPtttgAVQIks~~~~~Cl~~~~~~~~~~~~~i~l~ 125 (150)
T PF03498_consen 57 VNPKTGTCLAAYG-----NG---VFHYKSCDQDNLEQVFSIIPTTTGAVQIKSLSTGECLQTFNNSRTPIYYSIGLT 125 (150)
T ss_dssp EETTTSEEEEEET-----TC---EEEE--TTTCHGHH-EEEEEBTTS-EEEEETTT--EEEE-STTSS-SSEEEEEE
T ss_pred EcCCCCcceeecC-----CC---eEeecccCCCChhceEEEEEcCCCcEEEEecCCCceEEecCCCceeEEeeEEee
Confidence 3455778999854 34 24444498653 699997 45674 799999999999888776666666654
No 76
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.65 E-value=0.59 Score=49.79 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=38.5
Q ss_pred CCceEeeCCCCccCCCcceeeEEeccCCC-CCCceEECCCCcEEeCCCCceEEecCCc
Q 008464 493 VGVCLDASPKWKLTSKELRRGSFSKCKRD-ANQMWQLNPSGALISSYSGLCATVNLVK 549 (564)
Q Consensus 493 ~g~CLd~~~~~~~~~G~t~~v~~~~C~g~-~nQ~W~~~~~G~l~n~~SG~Cldv~~~~ 549 (564)
..+|||..+..+ .+ .+.+..|.+. .||+|.+...-+-.+.++++||+|...+
T Consensus 440 g~~Cl~s~~~~~--~~---~~gl~~C~~s~~nqqwa~~~t~~~~~~~~elCL~v~~~~ 492 (559)
T KOG3738|consen 440 GDNCLDSQGQNS--QE---ALGLASCHGSGGNQQWAFLRTSTQLITHRELCLAVGSNT 492 (559)
T ss_pred cchhhhhhhccc--cc---CcceeecccCCCCcchhhhhhhhhHHHHHhhhheeecCC
Confidence 568999877643 34 4779999885 8999987443344577899999998743
No 77
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=75.09 E-value=17 Score=44.47 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=40.9
Q ss_pred eecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEE
Q 008464 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVY 248 (564)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~~ 248 (564)
.++..||.++.|+-..++.+. ++|||.+++|.+. .++.+....++.++.+....+++
T Consensus 611 ~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g--~~d~~~~~~~~~~l~~~dP~~~l 668 (1111)
T TIGR02102 611 RLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMG--DHDAASIEIAYKEAKAINPNIIM 668 (1111)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccc--cCCHHHHHHHHHHHHHhCcCEEE
Confidence 478899999999966667765 7999999999764 24445556666666666545544
No 78
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=74.07 E-value=29 Score=41.64 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=45.3
Q ss_pred ecCCcHHHHHHHHHHHHHH-HhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEEEcC
Q 008464 191 VNTKLGAGRAFLRSLYQQY-AEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLS 251 (564)
Q Consensus 191 lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~~s~s 251 (564)
++..||.+++|+...++.+ ++.|||.+++|-..+ ++.+-...+++++++...++++---
T Consensus 466 ~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~--~~~~f~~~~~~~l~~i~pdi~l~GE 525 (898)
T TIGR02103 466 TATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGH--HPKAQMLAAREAIKALTPEIYFYGE 525 (898)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhh--CCHHHHHHHHHHHHHhCCCEEEEec
Confidence 4778999999996667776 489999999997642 4456677888888888777665443
No 79
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.29 E-value=7.7 Score=41.52 Aligned_cols=82 Identities=16% Similarity=0.136 Sum_probs=56.1
Q ss_pred CCeeeccCCCCCCC--CcEeecCCCCccEEEEEee---cCCCceEeeCCCCccCCCcceeeEEeccCCC-CCCceEECCC
Q 008464 458 EPLCLYKSRALLSS--DGEMIYKQQYQGKVHLLAS---KGVGVCLDASPKWKLTSKELRRGSFSKCKRD-ANQMWQLNPS 531 (564)
Q Consensus 458 ~~~Cld~~~~~~a~--~~~~c~g~~~Q~w~~~~~~---~~~g~CLd~~~~~~~~~G~t~~v~~~~C~g~-~nQ~W~~~~~ 531 (564)
+.+|||--+..... ..-.|.|..+.|=..+... .....||.+ +| .++++--|+-+ -+--|++...
T Consensus 489 t~~ClDsMG~~p~g~mglt~CHg~GgNQL~RlN~agQl~qge~CltA-------dg--~~i~~~hC~lgtv~g~WqY~~~ 559 (603)
T KOG3737|consen 489 TAYCLDSMGKTPGGFMGLTPCHGMGGNQLFRLNEAGQLMQGEQCLTA-------DG--SKIMITHCNLGTVKGEWQYFKN 559 (603)
T ss_pred cchhHHhcCCCCCCccccccccCCCCceEEEeccccchhccceeeec-------CC--ceEEEEEeecccccCceehhhc
Confidence 45899987654433 6677988765444433221 124579973 66 27899999855 4669998654
Q ss_pred -CcEEeCCCCceEEecCC
Q 008464 532 -GALISSYSGLCATVNLV 548 (564)
Q Consensus 532 -G~l~n~~SG~Cldv~~~ 548 (564)
-.++.+.+|+|+|+.-+
T Consensus 560 tk~~~H~~~~kC~~~se~ 577 (603)
T KOG3737|consen 560 TKRFTHIPSGKCLDRSEV 577 (603)
T ss_pred chheeeccccccccccch
Confidence 46999999999999654
No 80
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=65.52 E-value=32 Score=40.12 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=29.1
Q ss_pred eecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCC
Q 008464 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVF 223 (564)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~ 223 (564)
.+|..+|.+++|+...++.+. +.|||.+.+|...
T Consensus 310 ~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~ 344 (688)
T TIGR02100 310 TLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLAT 344 (688)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechh
Confidence 589999999999977777765 7999999999754
No 81
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=65.28 E-value=21 Score=40.49 Aligned_cols=274 Identities=16% Similarity=0.218 Sum_probs=121.0
Q ss_pred CCCCCCceEeccccccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCC
Q 008464 31 VRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDR 110 (564)
Q Consensus 31 ~~~~~pPmGWnSW~~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~k 110 (564)
.+.+-|=+||=|= |....+.++..+.++.|.+ +-.+-++.= -|+-..... . ..+.-.++ +.
T Consensus 98 dW~~fPRYGfls~--f~~~~~~~~~~~~i~~L~~----yHIN~~QFY-DW~~rH~~P-------l----~~~~~~~~-~~ 158 (559)
T PF13199_consen 98 DWTRFPRYGFLSD--FDKSKSAEDIEAEIDQLNR----YHINGLQFY-DWMYRHHKP-------L----PGTNGQPD-QT 158 (559)
T ss_dssp STTSS--EEEE-----GGGGGHHHHHHHHHHHHH----TT--EEEET-S--SBTTB--------S-----SSS-EEE--T
T ss_pred CcccCCcceEecC--CCCcCCchhHHHHHHHHHh----hCcCeEEEE-eeccccCCc-------C----CCCCCchh-hh
Confidence 5677777787663 4444577788888887754 222333331 244322100 0 00001111 24
Q ss_pred CCCCCCC----CChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCC
Q 008464 111 WPSSRGG----KGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQH 186 (564)
Q Consensus 111 FP~~~~~----~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~ 186 (564)
|++-.+. .=+|.+++.+|++|||.=.|.+-.-..-.. ...++..+ ++.|....+. ..+. -...-.|. .
T Consensus 159 w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~-~~~gv~~e--W~ly~d~~~~--~~~~--~~l~~~w~-s 230 (559)
T PF13199_consen 159 WTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANNNY-EEDGVSPE--WGLYKDDSHS--NQDT--YDLPDGWP-S 230 (559)
T ss_dssp T-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETT---S--SS-G--GBEEESSSBT--SB-E--EEETT-E---
T ss_pred hhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccccCc-ccccCCch--hhhhhccCCC--ccce--eecCcccc-c
Confidence 4432110 127999999999999999997653211000 01122211 1222221110 0000 00001121 2
Q ss_pred CceeecCCcHHHHHHH-HHHHHHHHhhCccEEEecCCCCC-------C--C-C-hHHHHHHHHHHHhC--CCCeEEEcCC
Q 008464 187 GFMSVNTKLGAGRAFL-RSLYQQYAEWGVDFVKHDCVFGD-------D--L-D-INEISFVSEVLKEL--DRPIVYSLSP 252 (564)
Q Consensus 187 ~~~~lD~t~p~~~~~~-~~~~~~~a~wGvdylK~D~~~~~-------~--~-~-~~~y~~m~~al~~~--gr~i~~s~s~ 252 (564)
..|.+||.+|+=|.|| ++..+.++..|||.+-+|=+... . . + ++.|..+-+++++. +.++++.-..
T Consensus 231 ~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~V~ 310 (559)
T PF13199_consen 231 DLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNAVS 310 (559)
T ss_dssp EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-GG
T ss_pred ceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeeccC
Confidence 2689999999999998 55556788999999999965431 1 1 1 34566666666543 4567775432
Q ss_pred -CCCCCchhhh---hhcccccEEEEecCCCCChhhHHHHhhhhhhhhhhhhhcccCCCCCCCCCCCCCcccccCCCCCCC
Q 008464 253 -GTGVTPAMAK---EVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNE 328 (564)
Q Consensus 253 -~~~~~p~~~~---~~~~~~n~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~~ 328 (564)
+.. ...+. .-.-|..+| |..+.+.++.+.++..+.+...+ + . -.++-..+
T Consensus 311 ~~g~--~~~a~~~~~d~lY~EvW----~~~~~Y~~Lk~~i~~~r~~~~~~-----g---k-----~~V~AAYm------- 364 (559)
T PF13199_consen 311 GYGI--EQIAKTSKVDFLYNEVW----DDYDTYGDLKRIIDQNRKYTSSG-----G---K-----STVVAAYM------- 364 (559)
T ss_dssp GTTH--HHHTT-S--SSEEEE------SBS-BHHHHHHHHHHHHHHH--------S----------EEEE----------
T ss_pred ccch--hhhhcccccceeeeecc----cccccHHHHHHHHHHHhhhhccc-----c---c-----hhhhHHHh-------
Confidence 110 00110 001266777 44567888988888777763110 0 0 01111110
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCeeeccCC
Q 008464 329 GPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDV 361 (564)
Q Consensus 329 g~~~~~~lT~~E~rt~~slwa~~~sPLiig~Dl 361 (564)
+..-|+.-.-+-.++-|+-|+.|.+|++.
T Consensus 365 ----n~fn~~~vlLtdA~i~A~Gg~HlelGd~~ 393 (559)
T PF13199_consen 365 ----NYFNTPSVLLTDAVIFASGGSHLELGDGG 393 (559)
T ss_dssp --------HHHHHHHHHHHHHTT-EEE-ETTS-
T ss_pred ----hhccchhhHHHHHHHHHCCCceeeecCCC
Confidence 01124455556667777778999998843
No 82
>PLN02877 alpha-amylase/limit dextrinase
Probab=65.05 E-value=65 Score=39.02 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=40.2
Q ss_pred cCCcHHHHHHHHHHHHHH-HhhCccEEEecCCCCCCCChHHHHHHHHHHHhC--------CCCeEEEcCC
Q 008464 192 NTKLGAGRAFLRSLYQQY-AEWGVDFVKHDCVFGDDLDINEISFVSEVLKEL--------DRPIVYSLSP 252 (564)
Q Consensus 192 D~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~--------gr~i~~s~s~ 252 (564)
...||.+++|+-..++.+ +++|||.+++|-... ++.+....++++|++. |+.|++-.-+
T Consensus 530 Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~--i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEg 597 (970)
T PLN02877 530 ASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGH--LMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEG 597 (970)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCEEEEEcccc--ccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeC
Confidence 567899999985556665 479999999997643 3444555666666654 4667665443
No 83
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=65.00 E-value=41 Score=41.94 Aligned_cols=56 Identities=16% Similarity=0.078 Sum_probs=38.3
Q ss_pred eecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCCChHHH-HHHHHHHHhCCCC
Q 008464 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI-SFVSEVLKELDRP 245 (564)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y-~~m~~al~~~gr~ 245 (564)
.+|..||.+++++...++.+.+.|||.+.+|-...-.-.+..+ ..++..+++...+
T Consensus 312 ~~n~~~p~v~~~i~d~lr~Wv~~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d 368 (1221)
T PRK14510 312 LPNLERPFILRLPMDVLRSWAKRGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQD 368 (1221)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCEEEEechhhhccCccchHHHHHHHHHHhCCC
Confidence 4677899999999888888888999999999643211112222 5556666665443
No 84
>PLN03244 alpha-amylase; Provisional
Probab=63.26 E-value=20 Score=42.15 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHH
Q 008464 119 GFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAG 198 (564)
Q Consensus 119 Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~ 198 (564)
.||.|+|.+|++|+++=|=+-+. .++ .+..-.+ ..|..+...|...+- ......| +-..+|..+|++
T Consensus 442 DLK~LVD~aH~~GI~VILDvV~N-H~~-~d~~~GL------~~fDGt~~~Yf~~~~--~g~~~~W---Gs~~fnyg~~EV 508 (872)
T PLN03244 442 DFKRLVDEAHGLGLLVFLDIVHS-YAA-ADEMVGL------SLFDGSNDCYFHTGK--RGHHKHW---GTRMFKYGDLDV 508 (872)
T ss_pred HHHHHHHHHHHCCCEEEEEecCc-cCC-Cccccch------hhcCCCccceeccCC--CCccCCC---CCceecCCCHHH
Confidence 79999999999999886544331 111 1100000 001110011222210 0111123 224689999999
Q ss_pred HHHHHHHHHHH-HhhCccEEEecCC
Q 008464 199 RAFLRSLYQQY-AEWGVDFVKHDCV 222 (564)
Q Consensus 199 ~~~~~~~~~~~-a~wGvdylK~D~~ 222 (564)
+.|+-+.++.+ .+.+||.+++|.+
T Consensus 509 r~FLLsna~yWleEyhIDGFRfDaV 533 (872)
T PLN03244 509 LHFLISNLNWWITEYQIDGFQFHSL 533 (872)
T ss_pred HHHHHHHHHHHHHHhCcCcceeecc
Confidence 99997777764 5999999999975
No 85
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.94 E-value=4.6 Score=43.12 Aligned_cols=51 Identities=25% Similarity=0.387 Sum_probs=39.6
Q ss_pred cCCCceEeeCCCCccCCCcceeeEEeccCC-CCCCceEECCCCcEEeCCCCceEEecCC
Q 008464 491 KGVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLNPSGALISSYSGLCATVNLV 548 (564)
Q Consensus 491 ~~~g~CLd~~~~~~~~~G~t~~v~~~~C~g-~~nQ~W~~~~~G~l~n~~SG~Cldv~~~ 548 (564)
..+++|||.-|.. +| +.+.+-.|.| +.||..+++..|+| .+--.||+..+.
T Consensus 487 ~at~~ClDsMG~~---p~--g~mglt~CHg~GgNQL~RlN~agQl--~qge~CltAdg~ 538 (603)
T KOG3737|consen 487 FATAYCLDSMGKT---PG--GFMGLTPCHGMGGNQLFRLNEAGQL--MQGEQCLTADGS 538 (603)
T ss_pred cccchhHHhcCCC---CC--CccccccccCCCCceEEEeccccch--hccceeeecCCc
Confidence 3578999987662 55 2788999986 78999999999987 445689996554
No 86
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=61.90 E-value=12 Score=37.39 Aligned_cols=141 Identities=17% Similarity=0.275 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeC-CCCCCCCCCCCChHHHHHHHH
Q 008464 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPD-PDRWPSSRGGKGFTEVAKKVH 128 (564)
Q Consensus 50 i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d-~~kFP~~~~~~Glk~lad~ih 128 (564)
++++.++......-..|...||+.|.+=+ .| +...+..+ +--||. .=+.+++..+.
T Consensus 67 ls~~~v~~~lq~~i~~le~~G~d~illlC-------TG------------~F~~l~~~~~lleP~----ril~~lV~al~ 123 (221)
T PF07302_consen 67 LSKKKVEPRLQACIAQLEAQGYDVILLLC-------TG------------EFPGLTARNPLLEPD----RILPPLVAALV 123 (221)
T ss_pred EEHHHHHHHHHHHHHHHHHCCCCEEEEec-------cC------------CCCCCCCCcceeehH----HhHHHHHHHhc
Confidence 67888887776544557889999887742 11 11111111 122443 23678888887
Q ss_pred HcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHH
Q 008464 129 AMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ 208 (564)
Q Consensus 129 ~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~ 208 (564)
.. .+.||-. |-....+. .. .+|..- ..+ -.+....|-+. ..+-+..-++.
T Consensus 124 ~~-~~vGViv-P~~eQ~~~-----~~------------~kW~~l--~~~--------~~~a~asPy~~-~~~~l~~Aa~~ 173 (221)
T PF07302_consen 124 GG-HQVGVIV-PLPEQIAQ-----QA------------EKWQPL--GNP--------VVVAAASPYEG-DEEELAAAARE 173 (221)
T ss_pred CC-CeEEEEe-cCHHHHHH-----HH------------HHHHhc--CCC--------eEEEEeCCCCC-CHHHHHHHHHH
Confidence 75 8999953 32211100 00 011100 000 01111222211 23344455688
Q ss_pred HHhhCccEEEecCCCCCCCChHHH-HHHHHHHHh-CCCCeEEEcC
Q 008464 209 YAEWGVDFVKHDCVFGDDLDINEI-SFVSEVLKE-LDRPIVYSLS 251 (564)
Q Consensus 209 ~a~wGvdylK~D~~~~~~~~~~~y-~~m~~al~~-~gr~i~~s~s 251 (564)
++++|.|+|=+||+. | +.|++.+++ +|.|++++-.
T Consensus 174 L~~~gadlIvLDCmG--------Yt~~~r~~~~~~~g~PVlLsr~ 210 (221)
T PF07302_consen 174 LAEQGADLIVLDCMG--------YTQEMRDIVQRALGKPVLLSRT 210 (221)
T ss_pred HHhcCCCEEEEECCC--------CCHHHHHHHHHHhCCCEEeHHH
Confidence 999999999999985 4 568888764 8999998753
No 87
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=60.94 E-value=46 Score=33.08 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCC----eEEEcC
Q 008464 200 AFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRP----IVYSLS 251 (564)
Q Consensus 200 ~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~----i~~s~s 251 (564)
+.+....+...+-|.||||.-.-.....+.+..+.|++++.++..| |.+|-.
T Consensus 146 ~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGG 201 (236)
T PF01791_consen 146 DLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGG 201 (236)
T ss_dssp HHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESS
T ss_pred HHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCC
Confidence 3556666778999999999987643334457788999999999888 887754
No 88
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=58.69 E-value=23 Score=35.72 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=45.9
Q ss_pred CceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCC-CeEEEc
Q 008464 187 GFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDR-PIVYSL 250 (564)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr-~i~~s~ 250 (564)
....||..+|.+++++...++.+.+-|||.+++|.... +..+..+.+.+.+++... .+++..
T Consensus 135 ~~~dln~~n~~v~~~i~~~~~~w~~~giDGfR~D~~~~--~~~~~~~~~~~~~~~~~~~~~~i~E 197 (316)
T PF00128_consen 135 DLPDLNYENPEVREYIIDVLKFWIEEGIDGFRLDAAKH--IPKEFWKEFRDEVKEEKPDFFLIGE 197 (316)
T ss_dssp TSEEBETTSHHHHHHHHHHHHHHHHTTESEEEETTGGG--SSHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred ccchhhhhhhhhhhhhcccccchhhceEeEEEEccccc--cchhhHHHHhhhhhhhccccceeee
Confidence 35689999999999998899999999999999997642 334555667777765433 344443
No 89
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=56.62 E-value=27 Score=38.77 Aligned_cols=54 Identities=22% Similarity=0.123 Sum_probs=41.6
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHh-hCccEEEecCCCCCCCChHHHHHHHHHHHhCC
Q 008464 188 FMSVNTKLGAGRAFLRSLYQQYAE-WGVDFVKHDCVFGDDLDINEISFVSEVLKELD 243 (564)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~-wGvdylK~D~~~~~~~~~~~y~~m~~al~~~g 243 (564)
+.-||..+|++++++...++.+.+ .|||.+++|...+ +.++-...+.+++++..
T Consensus 200 lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~--v~~~f~~~~~~~~~~~~ 254 (479)
T PRK09441 200 GADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKH--IDAWFIKEWIEHVREVA 254 (479)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcC--CCHHHHHHHHHHHHHhc
Confidence 347899999999999888888876 9999999997643 33445566777776554
No 90
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=55.67 E-value=85 Score=33.07 Aligned_cols=85 Identities=18% Similarity=0.092 Sum_probs=52.7
Q ss_pred HHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCcccccc-ccccccccccCCCCceeecCCcHHHHH
Q 008464 122 EVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKD-IGLKERACAWMQHGFMSVNTKLGAGRA 200 (564)
Q Consensus 122 ~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~D-i~~~~~~~~~~~~~~~~lD~t~p~~~~ 200 (564)
.-++.+|+.|-++=-|+.-|.. ++-.+- |.+ .|..-. ..+-.....|. +-+++|.++|+-++
T Consensus 85 ~~i~~Lk~~g~~viaYlSvGe~----E~~R~y--------~~~---~~~~~~~~~l~~~n~~W~--g~~~vd~~~~~W~~ 147 (315)
T TIGR01370 85 EEIVRAAAAGRWPIAYLSIGAA----EDYRFY--------WQK---GWKVNAPAWLGNEDPDWP--GNYDVKYWDPEWKA 147 (315)
T ss_pred HHHHHHHhCCcEEEEEEEchhc----cccchh--------hhh---hhhcCCHHHhCCCCCCCC--CceeEecccHHHHH
Confidence 4456799999999889887752 110110 000 010000 00001112232 45899999999999
Q ss_pred HHHHHHHHHHhhCccEEEecCCC
Q 008464 201 FLRSLYQQYAEWGVDFVKHDCVF 223 (564)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~~ 223 (564)
++...++.+.+-|||.|=+|.+.
T Consensus 148 il~~rl~~l~~kGfDGvfLD~lD 170 (315)
T TIGR01370 148 IAFSYLDRVIAQGFDGVYLDLID 170 (315)
T ss_pred HHHHHHHHHHHcCCCeEeeccch
Confidence 99777888899999999999764
No 91
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=55.09 E-value=43 Score=38.86 Aligned_cols=145 Identities=19% Similarity=0.131 Sum_probs=70.8
Q ss_pred HHHHHHHhhccCCceEEEeccccccc-cc-CCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEE
Q 008464 58 SAEIISQRLRPHGYEYVVVDYLWYRR-KV-KGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFG 135 (564)
Q Consensus 58 ~ad~~~~gl~~~Gy~~i~iDdgW~~~-~~-~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~G 135 (564)
.++-+-.+||.+||+-|+|=-.-+-. .- ...|....-|..++.+|...- |.| - +.||.|++++|++|+..=
T Consensus 256 FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s-~~r-i-----~efK~lVd~aHs~GI~Vl 328 (757)
T KOG0470|consen 256 FTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPES-PCR-I-----NEFKELVDKAHSLGIEVL 328 (757)
T ss_pred hhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCc-ccc-h-----HHHHHHHHHHhhCCcEEe
Confidence 34433347899999999987655541 10 011211111112222332111 222 1 269999999999999853
Q ss_pred EEeecCccccccCCCCcccccccCCCcccCC-CccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHH-HHhhC
Q 008464 136 IHVMRGISTQAFNADTPILDTLKGGAYEDSG-RQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ-YAEWG 213 (564)
Q Consensus 136 iy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g-~~~~~~Di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~-~a~wG 213 (564)
|=+ --...+.++.-++- .+.... ..|..+.-.. -.+.. +---++..||.+++|+-..++. +.++.
T Consensus 329 LDV--V~sHaa~n~~d~l~------~fdGid~~~Yf~~~~r~----~h~~~-~~r~fn~~~~~V~rflL~nLr~WVtEY~ 395 (757)
T KOG0470|consen 329 LDV--VHSHAAKNSKDGLN------MFDGIDNSVYFHSGPRG----YHNSW-CSRLFNYNHPVVLRFLLSNLRWWVTEYH 395 (757)
T ss_pred hhh--hhhhcccCcCCcch------hccCcCCceEEEeCCcc----ccccc-ccccccCCCHHHHHHHHHHHHHHHHhee
Confidence 311 00011111111100 011100 1122222100 00110 1123677899999999655555 67899
Q ss_pred ccEEEecCC
Q 008464 214 VDFVKHDCV 222 (564)
Q Consensus 214 vdylK~D~~ 222 (564)
||.+..|..
T Consensus 396 vDGFRFD~~ 404 (757)
T KOG0470|consen 396 VDGFRFDLV 404 (757)
T ss_pred ccceEEcch
Confidence 999999974
No 92
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=54.90 E-value=23 Score=35.96 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhCccEEEecCCCC-----CC--CChHHHHHHHHHHHhCCCCeEEEcCC
Q 008464 199 RAFLRSLYQQYAEWGVDFVKHDCVFG-----DD--LDINEISFVSEVLKELDRPIVYSLSP 252 (564)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~-----~~--~~~~~y~~m~~al~~~gr~i~~s~s~ 252 (564)
++|..++++++++||||-|-+|--.. +. .-+...+++++..+..|+.+++.+.|
T Consensus 120 ~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~Gk~f~itMAP 180 (332)
T COG3469 120 QAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQGKNFFITMAP 180 (332)
T ss_pred HHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhcCCceEEEecC
Confidence 57889999999999999999995321 21 22345567777778899999999875
No 93
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=54.76 E-value=53 Score=35.44 Aligned_cols=80 Identities=13% Similarity=0.216 Sum_probs=51.7
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEecc---cccccccCCccccCCCcc-cccCCCCceeCCCCCCCCCCCCCh
Q 008464 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDY---LWYRRKVKGAYVDSLGFD-VIDEWGRMIPDPDRWPSSRGGKGF 120 (564)
Q Consensus 48 ~~i~e~~i~~~ad~~---~~gl~~~Gy~~i~iDd---gW~~~~~~g~~~~~~~~~-~~d~~G~~~~d~~kFP~~~~~~Gl 120 (564)
..+|+++|.+..+.+ +...+++||+-|.|=. ||--.. . -|+..+ -.|+||--.-+..||+
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~q----F-LSp~~N~RtDeyGGslenR~rf~-------- 204 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQ----F-TISLFNKRTDKYGGSLENRLRFA-------- 204 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHH----h-cCCccCCCCCcCCCCHHHHhHHH--------
Confidence 468999999999865 3567889999999976 663100 0 000000 1367775455556776
Q ss_pred HHHHHHHHHc---CCeEEEEeec
Q 008464 121 TEVAKKVHAM---GLKFGIHVMR 140 (564)
Q Consensus 121 k~lad~ih~~---Glk~Giy~~p 140 (564)
..+++.|++. ++.+|+=+.+
T Consensus 205 ~eii~~vr~~~g~~f~v~vri~~ 227 (382)
T cd02931 205 IEIVEEIKARCGEDFPVSLRYSV 227 (382)
T ss_pred HHHHHHHHHhcCCCceEEEEEec
Confidence 5777888774 6777876654
No 94
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=54.64 E-value=74 Score=32.29 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=42.5
Q ss_pred eecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCC--C---C-CChHHHHHHHHHHHhCC-CCeEEEcC
Q 008464 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG--D---D-LDINEISFVSEVLKELD-RPIVYSLS 251 (564)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~--~---~-~~~~~y~~m~~al~~~g-r~i~~s~s 251 (564)
.||.|||=|++--+...+--++-|+.||++-=-.. . . +..+.|....+++.+.+ +.||+...
T Consensus 70 vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~iflttG 138 (249)
T PF02571_consen 70 VIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFLTTG 138 (249)
T ss_pred EEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEEeCc
Confidence 68999998887667766777899999999973211 1 1 12345666666666666 78888764
No 95
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=52.75 E-value=1.4e+02 Score=31.22 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=32.7
Q ss_pred CCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCC
Q 008464 186 HGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (564)
Q Consensus 186 ~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (564)
.+-.++|+-.|..=+|=-.+++..++.|||=|.+|++
T Consensus 182 ~~ehWVd~y~~~~WeYNvtIAKEa~~fGfdEiQFDYI 218 (400)
T COG1306 182 DGEHWVDAYDKNLWEYNVTIAKEAAKFGFDEIQFDYI 218 (400)
T ss_pred cceeeecccchhhhhhhHHHHHHHHHcCccceeeeEE
Confidence 3457899999999999888899999999999999975
No 96
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=52.15 E-value=16 Score=35.66 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCcc
Q 008464 119 GFTEVAKKVHAMGLKFGIHVMRGIS 143 (564)
Q Consensus 119 Glk~lad~ih~~Glk~Giy~~pg~~ 143 (564)
....++++||++|||+|+=+.||+.
T Consensus 100 ~~~~lv~~ir~~Gmk~G~alkPgT~ 124 (224)
T KOG3111|consen 100 KPAELVEKIREKGMKVGLALKPGTP 124 (224)
T ss_pred CHHHHHHHHHHcCCeeeEEeCCCCc
Confidence 4789999999999999999988874
No 97
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=51.99 E-value=13 Score=35.75 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=43.1
Q ss_pred cccCCCHHHHHHHHHHHHHhhccCCceE-EEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHH
Q 008464 46 FCWTISEEEFLQSAEIISQRLRPHGYEY-VVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVA 124 (564)
Q Consensus 46 ~~~~i~e~~i~~~ad~~~~gl~~~Gy~~-i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la 124 (564)
|.+..+.+.-.++|+.+-+.+++.+-.+ +.||=-.... .... .+....-. -++.++
T Consensus 63 f~~~~~~~~a~~qA~~f~~~~~~~~~~~~~~lD~E~~~~----------------~~~~--~~~~~~~~-----~~~~f~ 119 (191)
T cd06414 63 YSYAVTVAEAREEAEFVLRLIKGYKLSYPVYYDLEDETQ----------------LGAG--LSKDQRTD-----IANAFC 119 (191)
T ss_pred EEEeCCHHHHHHHHHHHHHHhhccCCCCCeEEEeecCCC----------------CCCC--CCHHHHHH-----HHHHHH
Confidence 4444566677888887766666665443 4566322110 0000 01111111 478899
Q ss_pred HHHHHcCCeEEEEeecCc
Q 008464 125 KKVHAMGLKFGIHVMRGI 142 (564)
Q Consensus 125 d~ih~~Glk~Giy~~pg~ 142 (564)
+.|++.|.|++||+.+..
T Consensus 120 ~~v~~~G~~~~iY~~~~~ 137 (191)
T cd06414 120 ETIEAAGYYPGIYANLSW 137 (191)
T ss_pred HHHHHcCCCeEEEecHHH
Confidence 999999999999987743
No 98
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=51.41 E-value=1.8e+02 Score=29.23 Aligned_cols=53 Identities=15% Similarity=0.163 Sum_probs=34.9
Q ss_pred HHHH-HHHHHHHHHHHhhCccEEEecCCCCCCCChHHH----HHHHHHHHhCCCCeEEEcC
Q 008464 196 GAGR-AFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI----SFVSEVLKELDRPIVYSLS 251 (564)
Q Consensus 196 p~~~-~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y----~~m~~al~~~gr~i~~s~s 251 (564)
|+.+ .|++++++.++++|+|.|=+|+-+.... .+.| +.+++++.+.|. +++++
T Consensus 81 ~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~--~lt~a 138 (253)
T cd06545 81 PAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGK--LLTAA 138 (253)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCc--EEEEE
Confidence 4444 4789999999999999999998654322 3445 345555655453 44443
No 99
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=51.12 E-value=2.3e+02 Score=27.21 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=16.6
Q ss_pred hHHHHHHHHHcCCeEEEEe
Q 008464 120 FTEVAKKVHAMGLKFGIHV 138 (564)
Q Consensus 120 lk~lad~ih~~Glk~Giy~ 138 (564)
++.-.+.+++.||++|+|.
T Consensus 44 ~~~n~~~A~~aGl~vG~Yh 62 (192)
T cd06522 44 AASQIANAKAAGLKVSAYH 62 (192)
T ss_pred HHHHHHHHHHCCCeeEEEE
Confidence 6667788999999999996
No 100
>PRK06852 aldolase; Validated
Probab=50.85 E-value=84 Score=32.96 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhC-CCCeEEEcCC
Q 008464 201 FLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKEL-DRPIVYSLSP 252 (564)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~-gr~i~~s~s~ 252 (564)
++...++.-++.|-|+||..++....- ..-+.|+++.+.+ ..|++++--+
T Consensus 189 ~ia~aaRiaaELGADIVKv~y~~~~~~--g~~e~f~~vv~~~g~vpVviaGG~ 239 (304)
T PRK06852 189 LIAGAAGVAACLGADFVKVNYPKKEGA--NPAELFKEAVLAAGRTKVVCAGGS 239 (304)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCcCCC--CCHHHHHHHHHhCCCCcEEEeCCC
Confidence 555556677899999999998742110 1234566777888 4577776543
No 101
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=49.99 E-value=25 Score=37.00 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=21.2
Q ss_pred hHHHHHHHHHcCCeEEEEeecCc
Q 008464 120 FTEVAKKVHAMGLKFGIHVMRGI 142 (564)
Q Consensus 120 lk~lad~ih~~Glk~Giy~~pg~ 142 (564)
.++|+..+++.+++||||..++.
T Consensus 152 V~EL~~A~rk~dirfGLY~SlfE 174 (454)
T KOG3340|consen 152 VGELASAIRKRDIRFGLYYSLFE 174 (454)
T ss_pred HHHHHHHHHhcCcceeEeecHHH
Confidence 68999999999999999999864
No 102
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=49.53 E-value=50 Score=33.38 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=13.8
Q ss_pred ChHHHHHHHHHcCCeE
Q 008464 119 GFTEVAKKVHAMGLKF 134 (564)
Q Consensus 119 Glk~lad~ih~~Glk~ 134 (564)
..+.|.++++++|+.|
T Consensus 57 ~~~~L~~~~~~~gi~f 72 (241)
T PF03102_consen 57 QHKELFEYCKELGIDF 72 (241)
T ss_dssp HHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHcCCEE
Confidence 5799999999999998
No 103
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=49.39 E-value=35 Score=32.41 Aligned_cols=74 Identities=9% Similarity=0.152 Sum_probs=42.2
Q ss_pred ccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHH
Q 008464 47 CWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKK 126 (564)
Q Consensus 47 ~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ 126 (564)
..+.+++++.+....| ++.|.++|+|= |..... .. -+..-.. +.+|... ...=+..+.+.
T Consensus 14 ~~~~~~~~W~~~~~~m----~~~GidtlIlq--~~~~~~-~~-----------~yps~~~-~~~~~~~-~~d~l~~~L~~ 73 (166)
T PF14488_consen 14 HQNWTPAQWREEFRAM----KAIGIDTLILQ--WTGYGG-FA-----------FYPSKLS-PGGFYMP-PVDLLEMILDA 73 (166)
T ss_pred hcCCCHHHHHHHHHHH----HHcCCcEEEEE--EeecCC-cc-----------cCCcccc-CccccCC-cccHHHHHHHH
Confidence 4578899998888764 68888888762 443211 00 0010000 1122210 00137788888
Q ss_pred HHHcCCeE--EEEeec
Q 008464 127 VHAMGLKF--GIHVMR 140 (564)
Q Consensus 127 ih~~Glk~--Giy~~p 140 (564)
..+.|||+ |||.++
T Consensus 74 A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 74 ADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHcCCEEEEeCCCCc
Confidence 88899986 887665
No 104
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=49.28 E-value=23 Score=34.27 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=42.3
Q ss_pred cccCCCHHHHHHHHHHHHHhhccCCce---EEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHH
Q 008464 46 FCWTISEEEFLQSAEIISQRLRPHGYE---YVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTE 122 (564)
Q Consensus 46 ~~~~i~e~~i~~~ad~~~~gl~~~Gy~---~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~ 122 (564)
|.+..+.++..+.|+++.+.++..|+. .+.|| ++.. . . ...... -++.
T Consensus 63 f~~~~~~~~a~~eA~~f~~~~~~~~~~~~~~~~lD--~E~~----------------~-~-----~~~~~~-----~~~~ 113 (192)
T cd06522 63 YAHYTSAADAQAEARYFANTAKSLGLSKNTVMVAD--MEDS----------------S-S-----SGNATA-----NVNA 113 (192)
T ss_pred EEecCChHHHHHHHHHHHHHHHHcCCCCCCceEEE--eecC----------------C-C-----cchHHH-----HHHH
Confidence 444457778888888775556655543 35566 2221 0 0 001111 4789
Q ss_pred HHHHHHHcCC-eEEEEeecC
Q 008464 123 VAKKVHAMGL-KFGIHVMRG 141 (564)
Q Consensus 123 lad~ih~~Gl-k~Giy~~pg 141 (564)
+.+.|++.|. +++||..+-
T Consensus 114 F~~~v~~~g~~~~~iY~~~~ 133 (192)
T cd06522 114 FWQTMKAAGYKNTDVYTSAS 133 (192)
T ss_pred HHHHHHHcCCCCcEEEccHH
Confidence 9999999998 899998763
No 105
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=48.07 E-value=35 Score=37.94 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=32.0
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCC
Q 008464 188 FMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (564)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (564)
..-||..+|.+++++..+++.+.+-|||.+++|.+
T Consensus 157 QpDLN~~np~v~e~i~~il~fwl~~GvdgfRLDAv 191 (470)
T TIGR03852 157 QIDLDVTSETTKRFIRDNLENLAEHGASIIRLDAF 191 (470)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 35689999999999999999999999999999965
No 106
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.46 E-value=2.4e+02 Score=29.31 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.4
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEeccc
Q 008464 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDYL 79 (564)
Q Consensus 48 ~~i~e~~i~~~ad~~---~~gl~~~Gy~~i~iDdg 79 (564)
..+|+++|.+..+.+ ++.++++||+-|.|-.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~ 163 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGA 163 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcch
Confidence 468999999999865 35778899999999764
No 107
>PRK13840 sucrose phosphorylase; Provisional
Probab=46.29 E-value=23 Score=39.66 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=43.6
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCC---CC----CC-ChHH---HHHHHHHHHhCCCCeEE
Q 008464 188 FMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF---GD----DL-DINE---ISFVSEVLKELDRPIVY 248 (564)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~---~~----~~-~~~~---y~~m~~al~~~gr~i~~ 248 (564)
..-||..+|++++++...++.+.+-|||.+++|... .. .. -++. .+.|++.++..+ ++++
T Consensus 161 QpDLN~~NP~V~~~i~~il~fwl~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~-~~ll 231 (495)
T PRK13840 161 QIDIDVHSAAGWEYLMSILDRFAASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARG-MEVL 231 (495)
T ss_pred cceeCCCCHHHHHHHHHHHHHHHHCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcC-CEEE
Confidence 367999999999999999999999999999999642 11 11 1333 356777777664 3443
No 108
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=46.16 E-value=37 Score=36.29 Aligned_cols=61 Identities=16% Similarity=0.328 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEe-cccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHH
Q 008464 50 ISEEEFLQSAEIISQRLRPHGYEYVVV-DYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVH 128 (564)
Q Consensus 50 i~e~~i~~~ad~~~~gl~~~Gy~~i~i-DdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih 128 (564)
.+++.+.+.++. ++++|+++|-| .-.|...++. -|.. .|. .|..+.+.++
T Consensus 7 ~~~e~~~~d~~~----m~~~G~n~vri~~~~W~~lEP~--------------eG~y-----dF~------~lD~~l~~a~ 57 (374)
T PF02449_consen 7 WPEEEWEEDLRL----MKEAGFNTVRIGEFSWSWLEPE--------------EGQY-----DFS------WLDRVLDLAA 57 (374)
T ss_dssp S-CCHHHHHHHH----HHHHT-SEEEE-CCEHHHH-SB--------------TTB--------H------HHHHHHHHHH
T ss_pred CCHHHHHHHHHH----HHHcCCCEEEEEEechhhccCC--------------CCee-----ecH------HHHHHHHHHH
Confidence 345677777766 46789999987 6678764321 1322 244 5999999999
Q ss_pred HcCCeEEEEee
Q 008464 129 AMGLKFGIHVM 139 (564)
Q Consensus 129 ~~Glk~Giy~~ 139 (564)
+.|+|+-|-+.
T Consensus 58 ~~Gi~viL~~~ 68 (374)
T PF02449_consen 58 KHGIKVILGTP 68 (374)
T ss_dssp CTT-EEEEEEC
T ss_pred hccCeEEEEec
Confidence 99999877654
No 109
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=45.62 E-value=75 Score=32.90 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=33.9
Q ss_pred HHHH-HHHHHHHHHHHhhCccEEEecCCCCCCCChHHHH----HHHHHHHhCCC
Q 008464 196 GAGR-AFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEIS----FVSEVLKELDR 244 (564)
Q Consensus 196 p~~~-~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~----~m~~al~~~gr 244 (564)
|..+ .|++++++.++++|+|.|-+|+-+....+.+.|. .++.+|.+.+.
T Consensus 85 ~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 85 PEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhhhcCc
Confidence 5544 4889999999999999999998664333445554 45555554554
No 110
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=43.36 E-value=86 Score=36.65 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=27.0
Q ss_pred eecCCcHHHHHHHHHHHHHH-HhhCccEEEecCC
Q 008464 190 SVNTKLGAGRAFLRSLYQQY-AEWGVDFVKHDCV 222 (564)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~ 222 (564)
.|+.+||-++.++-.-++++ .++.||.++.|-.
T Consensus 328 tln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa 361 (697)
T COG1523 328 TLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLA 361 (697)
T ss_pred ccccCChHHHHHHHHHHHHHHHHhCCCceeecch
Confidence 68899999999984445664 5899999999954
No 111
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=42.97 E-value=74 Score=33.73 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=47.2
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEecccc--------cccccCCccccCCCcccccCCCCceeCCCCCCCCCC
Q 008464 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDYLW--------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRG 116 (564)
Q Consensus 48 ~~i~e~~i~~~ad~~---~~gl~~~Gy~~i~iDdgW--------~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~ 116 (564)
..+|+++|.+..+.+ +..++.+||+-|.|=.+- .....+ -.|+||--.-|..||+
T Consensus 130 ~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~----------RtD~yGGslenR~Rf~---- 195 (337)
T PRK13523 130 VEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNK----------RTDEYGGSPENRYRFL---- 195 (337)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCC----------cCCCCCCCHHHHHHHH----
Confidence 469999999999865 356888999999997663 211100 0266664344445666
Q ss_pred CCChHHHHHHHHHc-CCeEEEEe
Q 008464 117 GKGFTEVAKKVHAM-GLKFGIHV 138 (564)
Q Consensus 117 ~~Glk~lad~ih~~-Glk~Giy~ 138 (564)
..+++.|++. .+.+||=+
T Consensus 196 ----~eii~~ir~~~~~~v~vRi 214 (337)
T PRK13523 196 ----REIIDAVKEVWDGPLFVRI 214 (337)
T ss_pred ----HHHHHHHHHhcCCCeEEEe
Confidence 5677777775 45555543
No 112
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=42.42 E-value=21 Score=34.45 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHcCCeEEEEeecC
Q 008464 119 GFTEVAKKVHAMGLKFGIHVMRG 141 (564)
Q Consensus 119 Glk~lad~ih~~Glk~Giy~~pg 141 (564)
-++.+++.+++.|.++|||+.+.
T Consensus 111 ~~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 111 FLQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHHHHHHhCCeEEEEcCcc
Confidence 47889999999999999999874
No 113
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=41.73 E-value=54 Score=34.72 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=15.4
Q ss_pred CChHHHHHHHHHcCCeE
Q 008464 118 KGFTEVAKKVHAMGLKF 134 (564)
Q Consensus 118 ~Glk~lad~ih~~Glk~ 134 (564)
.+++.|.+++++.|+.|
T Consensus 76 e~~~~L~~~~~~~Gi~~ 92 (329)
T TIGR03569 76 EDHRELKEYCESKGIEF 92 (329)
T ss_pred HHHHHHHHHHHHhCCcE
Confidence 47999999999999987
No 114
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=41.50 E-value=3.3e+02 Score=26.17 Aligned_cols=19 Identities=16% Similarity=-0.087 Sum_probs=17.0
Q ss_pred hHHHHHHHHHcCCeEEEEe
Q 008464 120 FTEVAKKVHAMGLKFGIHV 138 (564)
Q Consensus 120 lk~lad~ih~~Glk~Giy~ 138 (564)
+..-.+.+++.||++|+|.
T Consensus 40 ~~~n~~~A~~aGl~vG~Yh 58 (196)
T cd06415 40 ASAQVSSAIANGKMTGGYH 58 (196)
T ss_pred HHHHHHHHHHCCCeeEEEE
Confidence 6778888999999999996
No 115
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=41.47 E-value=77 Score=33.85 Aligned_cols=57 Identities=9% Similarity=-0.034 Sum_probs=39.3
Q ss_pred cHHHHH-HHHHHHHHHHhhCccEEEecCCCCCC---CChHHH----HHHHHHHHhCCCCeEEEcC
Q 008464 195 LGAGRA-FLRSLYQQYAEWGVDFVKHDCVFGDD---LDINEI----SFVSEVLKELDRPIVYSLS 251 (564)
Q Consensus 195 ~p~~~~-~~~~~~~~~a~wGvdylK~D~~~~~~---~~~~~y----~~m~~al~~~gr~i~~s~s 251 (564)
.|..++ |++++++.++++|||.|=+|+-+... .+.+.| +.++++|++.++...+++.
T Consensus 93 ~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 93 NPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 455554 88999999999999999999976532 234455 3456666666555556554
No 116
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=40.68 E-value=3.7e+02 Score=27.23 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHH-hCCCCeEEEcCC
Q 008464 198 GRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLK-ELDRPIVYSLSP 252 (564)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~-~~gr~i~~s~s~ 252 (564)
.+.|++.+.+.++++|||.|=+|+-++. +.+.|..+-+.|+ +.++..++++.|
T Consensus 97 r~~f~~s~~~~~~~~~~DGiDiDwE~p~--~~~~~~~ll~~Lr~~~~~~~~lT~Ap 150 (256)
T cd06546 97 FERYYGQLRDMIRRRGLDGLDLDVEEPM--SLDGIIRLIDRLRSDFGPDFIITLAP 150 (256)
T ss_pred HHHHHHHHHHHHHHhCCCceEEeeecCC--CHhHHHHHHHHHHHHhCCCcEEEECC
Confidence 4568888888899999999999987642 2345655555554 456667777654
No 117
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.94 E-value=1.1e+02 Score=32.63 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=48.4
Q ss_pred ccCCCHHHHHHHHHHH---HHhhccCCceEEEecccc--------cccccCCccccCCCcccccCCCCceeCCCCCCCCC
Q 008464 47 CWTISEEEFLQSAEII---SQRLRPHGYEYVVVDYLW--------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSR 115 (564)
Q Consensus 47 ~~~i~e~~i~~~ad~~---~~gl~~~Gy~~i~iDdgW--------~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~ 115 (564)
-..+|+++|.+..+.+ +..++.+||+-|.|=.+- ....... .|+||--..|..||+
T Consensus 131 p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R----------~D~yGGslenR~r~~--- 197 (353)
T cd04735 131 PRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRR----------TDEWGGSLENRMRFP--- 197 (353)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCC----------CcccCCcHHHHHHHH---
Confidence 3569999999999865 356888999999987542 2211100 366764344556666
Q ss_pred CCCChHHHHHHHHHc-------CCeEEEEeec
Q 008464 116 GGKGFTEVAKKVHAM-------GLKFGIHVMR 140 (564)
Q Consensus 116 ~~~Glk~lad~ih~~-------Glk~Giy~~p 140 (564)
..+++.|++. .+.+|+=+.+
T Consensus 198 -----~eii~~vr~~vg~~~~~~~~v~~R~s~ 224 (353)
T cd04735 198 -----LAVVKAVQEVIDKHADKDFILGYRFSP 224 (353)
T ss_pred -----HHHHHHHHHHhccccCCCceEEEEECc
Confidence 5677777763 4556665443
No 118
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=38.90 E-value=94 Score=34.01 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=44.0
Q ss_pred CceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCC----------CChHHHH----HHHHHHHhC----CCCeEE
Q 008464 187 GFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDD----------LDINEIS----FVSEVLKEL----DRPIVY 248 (564)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~----------~~~~~y~----~m~~al~~~----gr~i~~ 248 (564)
+|+.+=.++-.-+.|.++.++.++.|+||.|-+|+-|+.+ .+.+.|. .+|+.|.++ ||...|
T Consensus 141 ~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~L 220 (441)
T COG3325 141 GFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKANYVLLLQELRKKLDKAGVEDGRHYQL 220 (441)
T ss_pred CcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhhcccccCceEEE
Confidence 4554444444555688999999999999999999977521 2345563 466667654 456667
Q ss_pred EcC
Q 008464 249 SLS 251 (564)
Q Consensus 249 s~s 251 (564)
++-
T Consensus 221 TiA 223 (441)
T COG3325 221 TIA 223 (441)
T ss_pred EEe
Confidence 664
No 119
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=38.63 E-value=1.3e+02 Score=32.32 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=50.3
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEecccccccccCCccccCCCccc-ccCCCCceeCCCCCCCCCCCCChHHH
Q 008464 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDV-IDEWGRMIPDPDRWPSSRGGKGFTEV 123 (564)
Q Consensus 48 ~~i~e~~i~~~ad~~---~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~-~d~~G~~~~d~~kFP~~~~~~Glk~l 123 (564)
..+|+++|.+..+.+ +...+.+||+-|.|-.+--.... +. .|+-++. .|+||--..|..||+ ..+
T Consensus 147 ~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~--qF-LSp~~N~RtDeYGGslENR~Rf~--------~Ei 215 (362)
T PRK10605 147 RALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLH--QF-LSPSSNQRTDQYGGSVENRARLV--------LEV 215 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHH--Hh-cCCcCCCCCCcCCCcHHHHHHHH--------HHH
Confidence 469999999999865 45788999999998654321100 00 0111111 277886666767887 567
Q ss_pred HHHHHHc-C-CeEEEEeec
Q 008464 124 AKKVHAM-G-LKFGIHVMR 140 (564)
Q Consensus 124 ad~ih~~-G-lk~Giy~~p 140 (564)
++.|++. | -.+|+=+.|
T Consensus 216 v~aVr~~vg~~~igvRis~ 234 (362)
T PRK10605 216 VDAGIAEWGADRIGIRISP 234 (362)
T ss_pred HHHHHHHcCCCeEEEEECC
Confidence 7777773 1 125555443
No 120
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=37.43 E-value=1.3e+02 Score=32.58 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.6
Q ss_pred hHHHHHHHHHcCCeEEEEeecCc
Q 008464 120 FTEVAKKVHAMGLKFGIHVMRGI 142 (564)
Q Consensus 120 lk~lad~ih~~Glk~Giy~~pg~ 142 (564)
++.+++.+++.||+||||+...+
T Consensus 103 vgela~Avr~qGL~FGvy~s~a~ 125 (430)
T COG3669 103 VGELAKAVREQGLRFGVYLSGAW 125 (430)
T ss_pred HHHHHHHHHHcCCeeeEeeccCc
Confidence 78999999999999999998543
No 121
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=36.72 E-value=83 Score=32.57 Aligned_cols=55 Identities=13% Similarity=0.035 Sum_probs=36.6
Q ss_pred cHHHHH-HHHHHHHHHHhhCccEEEecCCCCCCCChHHHH----HHHHHHHhCCCCeEEE
Q 008464 195 LGAGRA-FLRSLYQQYAEWGVDFVKHDCVFGDDLDINEIS----FVSEVLKELDRPIVYS 249 (564)
Q Consensus 195 ~p~~~~-~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~----~m~~al~~~gr~i~~s 249 (564)
+|..++ +++++++..++.|||.|-+||-+....+.+.|. .++.+|.+.|..+.++
T Consensus 85 ~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~~~~~lsv~ 144 (298)
T cd06549 85 DPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQGKQLTVT 144 (298)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhhcCcEEEEE
Confidence 355544 789999999999999999999654333455564 4555555555433333
No 122
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=36.11 E-value=1.1e+02 Score=31.87 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhhCccEEEecCCCCCCC-----ChHHHHHHHHHH-HhCCCCeEEEcCC
Q 008464 197 AGRAFLRSLYQQYAEWGVDFVKHDCVFGDDL-----DINEISFVSEVL-KELDRPIVYSLSP 252 (564)
Q Consensus 197 ~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~-----~~~~y~~m~~al-~~~gr~i~~s~s~ 252 (564)
..+.|++++.+.++++|+|-|=+|+-++... +.+.+..+-+.| ++.++.++++..|
T Consensus 94 ~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~~~~lT~AP 155 (312)
T cd02871 94 QEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGPNFILTMAP 155 (312)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 4567889999999999999999998764221 223443333333 3456678888875
No 123
>PRK08227 autoinducer 2 aldolase; Validated
Probab=35.93 E-value=2.2e+02 Score=29.17 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEEEcCC
Q 008464 201 FLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSP 252 (564)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~~s~s~ 252 (564)
++..-++.-++.|-|+||..++ . +.|+++.+.+..|++++-.+
T Consensus 159 ~ia~aaRiaaELGADiVK~~y~-------~--~~f~~vv~a~~vPVviaGG~ 201 (264)
T PRK08227 159 YFSLATRIAAEMGAQIIKTYYV-------E--EGFERITAGCPVPIVIAGGK 201 (264)
T ss_pred HHHHHHHHHHHHcCCEEecCCC-------H--HHHHHHHHcCCCcEEEeCCC
Confidence 5666667778999999999985 1 57888888888899977644
No 124
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=35.52 E-value=69 Score=28.61 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHc
Q 008464 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (564)
Q Consensus 51 ~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~ 130 (564)
|-+........+++.+++.|.+-+++|=+ | .+|-. -++.|++-+++.
T Consensus 64 n~~aA~~vG~~la~ra~~~gi~~vvfDrg----------------------g------~~YhG-----rv~A~a~~aRe~ 110 (114)
T TIGR00060 64 NKDAAKKVGKLVAERLKEKGIKDVVFDRG----------------------G------YKYHG-----RVAALAEAAREA 110 (114)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCC----------------------C------CcchH-----HHHHHHHHHHHh
Confidence 34555566667788899999999999832 1 23322 599999999999
Q ss_pred CCeE
Q 008464 131 GLKF 134 (564)
Q Consensus 131 Glk~ 134 (564)
||+|
T Consensus 111 Gl~F 114 (114)
T TIGR00060 111 GLNF 114 (114)
T ss_pred CCCC
Confidence 9987
No 125
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=35.22 E-value=3e+02 Score=28.33 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEEEcCC
Q 008464 202 LRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSP 252 (564)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~~s~s~ 252 (564)
+..-.+.-++.|.|.||.++... -+.|+++.+.++-|++++--+
T Consensus 168 v~~aaRlaaelGADIiK~~ytg~-------~e~F~~vv~~~~vpVviaGG~ 211 (265)
T COG1830 168 VGYAARLAAELGADIIKTKYTGD-------PESFRRVVAACGVPVVIAGGP 211 (265)
T ss_pred HHHHHHHHHHhcCCeEeecCCCC-------hHHHHHHHHhCCCCEEEeCCC
Confidence 33434556899999999998532 267789999999999987654
No 126
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=34.70 E-value=5.8e+02 Score=26.99 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=47.0
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEecccc--cccccCCccccCCCccc-ccCCCCceeCCCCCCCCCCCCChH
Q 008464 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDYLW--YRRKVKGAYVDSLGFDV-IDEWGRMIPDPDRWPSSRGGKGFT 121 (564)
Q Consensus 48 ~~i~e~~i~~~ad~~---~~gl~~~Gy~~i~iDdgW--~~~~~~g~~~~~~~~~~-~d~~G~~~~d~~kFP~~~~~~Glk 121 (564)
..+|+++|.+..+.+ +..++.+||+-|.|=.+- --.. . .|+-++. .|+||--..+..||+ .
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~q----F-lSp~~N~R~D~yGGslenR~rf~--------~ 206 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQ----F-LRDGSNKRTDEYGGSIENRARFL--------L 206 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHH----h-cCCccCCCCCcCCCcHHHhhhHH--------H
Confidence 468999999999866 356888999999996554 1100 0 0000011 366775455556776 5
Q ss_pred HHHHHHHHc-CC-eEEEE
Q 008464 122 EVAKKVHAM-GL-KFGIH 137 (564)
Q Consensus 122 ~lad~ih~~-Gl-k~Giy 137 (564)
.+++.|++. |- .+|+=
T Consensus 207 eii~air~~vg~d~v~vR 224 (338)
T cd02933 207 EVVDAVAEAIGADRVGIR 224 (338)
T ss_pred HHHHHHHHHhCCCceEEE
Confidence 777888864 43 34443
No 127
>PRK06769 hypothetical protein; Validated
Probab=34.58 E-value=65 Score=30.41 Aligned_cols=21 Identities=14% Similarity=-0.091 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHcCCeEEEEee
Q 008464 119 GFTEVAKKVHAMGLKFGIHVM 139 (564)
Q Consensus 119 Glk~lad~ih~~Glk~Giy~~ 139 (564)
|++.+.++||++|++++|=++
T Consensus 32 gv~e~L~~Lk~~G~~l~I~Tn 52 (173)
T PRK06769 32 FTKASLQKLKANHIKIFSFTN 52 (173)
T ss_pred CHHHHHHHHHHCCCEEEEEEC
Confidence 799999999999999999764
No 128
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=34.26 E-value=41 Score=32.54 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHcCCeEEEEeecC
Q 008464 119 GFTEVAKKVHAMGLKFGIHVMRG 141 (564)
Q Consensus 119 Glk~lad~ih~~Glk~Giy~~pg 141 (564)
-++.+.++|++.|.+++||+.+-
T Consensus 109 ~~~~f~~~v~~~G~~~~iYt~~~ 131 (196)
T cd06415 109 AILAFMDTIKDAGYKPMLYSYKP 131 (196)
T ss_pred HHHHHHHHHHHhCCCcEEEecHH
Confidence 47889999999999999998763
No 129
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=33.66 E-value=1.8e+02 Score=31.31 Aligned_cols=76 Identities=21% Similarity=0.320 Sum_probs=50.7
Q ss_pred ccCCCHHHHHHHHHHHH---HhhccCCceEEEec--------ccccccccCCccccCCCcccccCCCCceeCCCCCCCCC
Q 008464 47 CWTISEEEFLQSAEIIS---QRLRPHGYEYVVVD--------YLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSR 115 (564)
Q Consensus 47 ~~~i~e~~i~~~ad~~~---~gl~~~Gy~~i~iD--------dgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~ 115 (564)
-..+|+++|.+..+.++ ...+.+||+-|.|= -++.....+. .|+||--..|..||+
T Consensus 136 pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~R----------tD~YGGSlENR~Rf~--- 202 (363)
T COG1902 136 PRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKR----------TDEYGGSLENRARFL--- 202 (363)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCC----------CCccCCcHHHHHHHH---
Confidence 34599999999998663 46788999988874 3333222111 378886677778888
Q ss_pred CCCChHHHHHHHHH---cCCeEEEEeec
Q 008464 116 GGKGFTEVAKKVHA---MGLKFGIHVMR 140 (564)
Q Consensus 116 ~~~Glk~lad~ih~---~Glk~Giy~~p 140 (564)
.++++.|++ ..+-+|+=++|
T Consensus 203 -----~EVv~aVr~~vg~~~~vg~Rls~ 225 (363)
T COG1902 203 -----LEVVDAVREAVGADFPVGVRLSP 225 (363)
T ss_pred -----HHHHHHHHHHhCCCceEEEEECc
Confidence 566777766 34456666655
No 130
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=33.27 E-value=1.6e+02 Score=30.55 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=34.7
Q ss_pred hhccCCceEEEecccccccccCCccccCCCcccccCCCCceeC---CCCCCCCCCCCChHHHHHHHHHcCCeEEEEee
Q 008464 65 RLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPD---PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVM 139 (564)
Q Consensus 65 gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d---~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~ 139 (564)
.+.++|.+.|.++|-|.... -+.|. .--.|. ++.+++.+|+.|.+..++..
T Consensus 176 ~~~~~G~d~i~i~d~~~~~~------------------~isp~~f~e~~~p~------~k~i~~~i~~~g~~~~lH~c 229 (330)
T cd03465 176 ALIEAGADGIYISDPWASSS------------------ILSPEDFKEFSLPY------LKKVFDAIKALGGPVIHHNC 229 (330)
T ss_pred HHHHhCCCEEEEeCCccccC------------------CCCHHHHHHHhhHH------HHHHHHHHHHcCCceEEEEC
Confidence 46677999999999875421 00110 011353 89999999999999888764
No 131
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=33.08 E-value=1.8e+02 Score=30.52 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=46.3
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEecccc--------cccccCCccccCCCcccccCCCCceeCCCCCCCCCC
Q 008464 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDYLW--------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRG 116 (564)
Q Consensus 48 ~~i~e~~i~~~ad~~---~~gl~~~Gy~~i~iDdgW--------~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~ 116 (564)
..+|+++|.+..+.+ ++.++++||+-|.|-.+- ...... -.|++|--..+.-||+
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~----------R~D~yGgsl~nr~rf~---- 207 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNK----------RTDEYGGSLENRMRFL---- 207 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCC----------CCcccCCCHHHHhHHH----
Confidence 569999999999866 356788999999987532 111000 1356675444444554
Q ss_pred CCChHHHHHHHHHc---CCeEEEEe
Q 008464 117 GKGFTEVAKKVHAM---GLKFGIHV 138 (564)
Q Consensus 117 ~~Glk~lad~ih~~---Glk~Giy~ 138 (564)
..+++.|++. ++.++|=+
T Consensus 208 ----~eiv~aIR~~vG~d~~v~vri 228 (336)
T cd02932 208 ----LEVVDAVRAVWPEDKPLFVRI 228 (336)
T ss_pred ----HHHHHHHHHHcCCCceEEEEE
Confidence 5777778764 45555543
No 132
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=32.99 E-value=4.3e+02 Score=25.01 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhCccEEEecCCCCCCCC---hHHHHHHHHHHH-hCCC-CeEEEcCC
Q 008464 198 GRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD---INEISFVSEVLK-ELDR-PIVYSLSP 252 (564)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~---~~~y~~m~~al~-~~gr-~i~~s~s~ 252 (564)
.+++++++++.++++|+|.|=+|+-+....+ .+.|..+-+.|+ +.++ ..++++.+
T Consensus 89 ~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a~ 148 (210)
T cd00598 89 RAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYLLTIAV 148 (210)
T ss_pred HHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEEe
Confidence 4567899999999999999999987654333 456654444443 3333 46777654
No 133
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=32.26 E-value=95 Score=32.41 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhCccEEEecCCCCCC----------CChHHH----HHHHHHHHhC----CCCeEEEcCC
Q 008464 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDD----------LDINEI----SFVSEVLKEL----DRPIVYSLSP 252 (564)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~----------~~~~~y----~~m~~al~~~----gr~i~~s~s~ 252 (564)
+.|++++++.++++|||.|=+|+-++.. .+.+.| +.++.+|.+. +++.++++..
T Consensus 111 ~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~~~Ls~av 182 (322)
T cd06548 111 AKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKELREALDALGAETGRKYLLTIAA 182 (322)
T ss_pred HHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhccCCceEEEEEc
Confidence 4588999999999999999999876532 223444 4566666654 4677777753
No 134
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=32.18 E-value=1.5e+02 Score=31.48 Aligned_cols=31 Identities=32% Similarity=0.304 Sum_probs=25.3
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEecc
Q 008464 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDY 78 (564)
Q Consensus 48 ~~i~e~~i~~~ad~~---~~gl~~~Gy~~i~iDd 78 (564)
..+|+++|.+..+.+ +..++.+||+.|.|=.
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ 158 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREAGYDGVEIMG 158 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 469999999999866 3467889999999943
No 135
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=30.14 E-value=1.1e+02 Score=30.71 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=18.6
Q ss_pred hHHHHHHHHHcCCeEEEEeec
Q 008464 120 FTEVAKKVHAMGLKFGIHVMR 140 (564)
Q Consensus 120 lk~lad~ih~~Glk~Giy~~p 140 (564)
|+.+++.+|++|+++-+|..|
T Consensus 187 l~~~v~~a~~~Gl~vr~Wtv~ 207 (228)
T cd08577 187 LKSIIDKAHARGKKVRFWGTP 207 (228)
T ss_pred HHHHHHHHHHCCCEEEEEccC
Confidence 788899999999999999755
No 136
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=30.04 E-value=98 Score=34.35 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHcCCeE
Q 008464 119 GFTEVAKKVHAMGLKF 134 (564)
Q Consensus 119 Glk~lad~ih~~Glk~ 134 (564)
.||.|++.+|++|||+
T Consensus 82 dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 82 ELLNAIDALHENGIKV 97 (479)
T ss_pred HHHHHHHHHHHCCCEE
Confidence 5999999999999996
No 137
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=29.83 E-value=1e+02 Score=27.31 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008464 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (564)
Q Consensus 50 i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~ 129 (564)
-|-+........+++.+++.|++.+++|-+ | .+|-. -++.|++-+++
T Consensus 58 ~n~~aA~~vG~lla~ra~~~gi~~vvfDrg----------------------g------~~yhG-----rV~a~a~~are 104 (109)
T CHL00139 58 STCDASKLVGQKLAKKSLKKGITKVVFDRG----------------------G------KLYHG-----RIKALAEAARE 104 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEcCC----------------------C------Cccch-----HHHHHHHHHHH
Confidence 455566666777888999999999999932 1 12222 59999999999
Q ss_pred cCCeE
Q 008464 130 MGLKF 134 (564)
Q Consensus 130 ~Glk~ 134 (564)
.||+|
T Consensus 105 ~GL~f 109 (109)
T CHL00139 105 AGLQF 109 (109)
T ss_pred hCCCC
Confidence 99986
No 138
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=29.02 E-value=1.2e+02 Score=32.67 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=24.8
Q ss_pred HHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEEEcCC
Q 008464 206 YQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSP 252 (564)
Q Consensus 206 ~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~~s~s~ 252 (564)
++.|+++|++.|++|+-+ +.+....|.+- |-+|.++.|.
T Consensus 82 l~~~~~lGi~~lRlD~Gf----~~~~ia~ls~n----g~~I~LNASt 120 (357)
T PF05913_consen 82 LSFFKELGIDGLRLDYGF----SGEEIAKLSKN----GIKIELNAST 120 (357)
T ss_dssp THHHHHHT-SEEEESSS-----SCHHHHHHTTT-----SEEEEETTT
T ss_pred HHHHHHcCCCEEEECCCC----CHHHHHHHHhC----CCEEEEECCC
Confidence 367899999999999743 33444444432 6677777774
No 139
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=28.91 E-value=3.7e+02 Score=28.78 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhCccEEEecCCCC-CCC-----------ChH------HHHHHHHHHHhC---CCCeEEEcCC
Q 008464 201 FLRSLYQQYAEWGVDFVKHDCVFG-DDL-----------DIN------EISFVSEVLKEL---DRPIVYSLSP 252 (564)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~~~-~~~-----------~~~------~y~~m~~al~~~---gr~i~~s~s~ 252 (564)
.+..-++.-++.|-|+||..+... ..+ ..+ .-+.++.+.+.+ ..|++++--+
T Consensus 218 ~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~ 290 (348)
T PRK09250 218 LTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGA 290 (348)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCC
Confidence 455555667899999999999742 110 011 124577777776 5688877643
No 140
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=26.81 E-value=2.5e+02 Score=29.39 Aligned_cols=52 Identities=10% Similarity=0.194 Sum_probs=34.2
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCC-CC--CCCCCCCCChHHHHHHHHHcCCeEEEEee
Q 008464 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP-DR--WPSSRGGKGFTEVAKKVHAMGLKFGIHVM 139 (564)
Q Consensus 64 ~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~-~k--FP~~~~~~Glk~lad~ih~~Glk~Giy~~ 139 (564)
+.+.++|.+.|+++|-|... ..+.|.. ++ .|. ++.+.+.+|+.|-.+.++..
T Consensus 187 ~~~~~~Gad~I~i~dp~a~~------------------~~lsp~~f~e~~~p~------~k~i~~~i~~~g~~~ilH~C 241 (340)
T TIGR01463 187 KAMVEAGADVIAIADPFASS------------------DLISPETYKEFGLPY------QKRLFAYIKEIGGITVLHIC 241 (340)
T ss_pred HHHHHcCCCEEEecCCccCc------------------cccCHHHHHHHHHHH------HHHHHHHHHhcCCceEEEEC
Confidence 35678899999999887531 0111110 11 253 89999999999877777753
No 141
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=26.77 E-value=1.8e+02 Score=31.17 Aligned_cols=51 Identities=16% Similarity=0.052 Sum_probs=33.4
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCe-EEEE
Q 008464 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLK-FGIH 137 (564)
Q Consensus 64 ~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk-~Giy 137 (564)
+.+.++|-+-|+|.|.|..... ...++.=.+| .++.+.+.|++.+-. +=|+
T Consensus 196 ~~qi~aGAdavqifDsW~g~l~-----------------~~~~~~f~~~------~~~~i~~~vk~~~~~~pii~ 247 (352)
T COG0407 196 KAQIEAGADAVQIFDSWAGVLS-----------------MIDYDEFVLP------YMKRIVREVKEVKGGVPVIH 247 (352)
T ss_pred HHHHHhCCCEEEeeccccccCC-----------------cccHHHHhhh------HHHHHHHHHHHhCCCCcEEE
Confidence 4567889999999999975321 0112212345 599999999987663 3344
No 142
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=26.34 E-value=1.2e+02 Score=29.92 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHc
Q 008464 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (564)
Q Consensus 51 ~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~ 130 (564)
|-+....+...+++.++..|..-|+.|=+ |. +|-. -+++|||.+++.
T Consensus 161 nieaA~~VGk~IAerAl~kGI~kVvFDRg----------------------Gy------~YHG-----RVkALAdaARe~ 207 (211)
T PTZ00032 161 TIKAAYELGKLIGRKALSKGISKVRFDRA----------------------HY------KYAG-----KVEALAEGARAV 207 (211)
T ss_pred cHHHHHHHHHHHHHHHHHCCCCEEEEeCC----------------------CC------eehh-----HHHHHHHHHHHc
Confidence 33445556667788899999999999921 21 2221 489999999999
Q ss_pred CCeE
Q 008464 131 GLKF 134 (564)
Q Consensus 131 Glk~ 134 (564)
||+|
T Consensus 208 GLkF 211 (211)
T PTZ00032 208 GLQF 211 (211)
T ss_pred CCCC
Confidence 9986
No 143
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=26.31 E-value=1.1e+02 Score=31.01 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=27.3
Q ss_pred HHHHHhhCccEEEecCCCCCC-----CChHHHHHHHHHHHhCCCCeEEEc
Q 008464 206 YQQYAEWGVDFVKHDCVFGDD-----LDINEISFVSEVLKELDRPIVYSL 250 (564)
Q Consensus 206 ~~~~a~wGvdylK~D~~~~~~-----~~~~~y~~m~~al~~~gr~i~~s~ 250 (564)
+.++++.-|||||+|-.+-.. .+..-.+.+-...++.|-.++...
T Consensus 164 l~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEG 213 (256)
T COG2200 164 LSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEG 213 (256)
T ss_pred HHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEee
Confidence 477899999999999432111 111223555555666776666543
No 144
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=26.17 E-value=1.4e+02 Score=31.47 Aligned_cols=50 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcC
Q 008464 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (564)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~~s~s 251 (564)
+..++..++.=|+|+||=|- +....+.+ +|+ +++.++-+++|++.+|...
T Consensus 32 ~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~ly~~N 88 (309)
T PF00016_consen 32 LAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEETGEKKLYAAN 88 (309)
T ss_dssp HHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHSS--EEEEE
T ss_pred hhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccccceecceecc
Confidence 44456667788999999995 44444443 454 4566677789987666554
No 145
>smart00642 Aamy Alpha-amylase domain.
Probab=26.04 E-value=1.4e+02 Score=28.26 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHcCCeEEE
Q 008464 119 GFTEVAKKVHAMGLKFGI 136 (564)
Q Consensus 119 Glk~lad~ih~~Glk~Gi 136 (564)
.|+.|++.+|++|+|+=+
T Consensus 71 d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 71 DFKELVDAAHARGIKVIL 88 (166)
T ss_pred HHHHHHHHHHHCCCEEEE
Confidence 699999999999999633
No 146
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=25.93 E-value=1.2e+02 Score=32.09 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhCccEEEecCCCCCC-----CChHHH----HHHHHHHHhCCCCeEEEcC
Q 008464 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDD-----LDINEI----SFVSEVLKELDRPIVYSLS 251 (564)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~-----~~~~~y----~~m~~al~~~gr~i~~s~s 251 (564)
+.|++++++.++++|||.|=+|+-+... .+.+.| +.++++|.+.++..++++.
T Consensus 98 ~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~a 159 (362)
T cd02872 98 KTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEAPRLLLTAA 159 (362)
T ss_pred HHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhCcCeEEEEE
Confidence 4588999999999999999999876432 233445 4566666666555677665
No 147
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=25.44 E-value=1.5e+02 Score=30.35 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=34.0
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCC-CC--CCCCCCCCChHHHHHHHHHcCCeEEEEe
Q 008464 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP-DR--WPSSRGGKGFTEVAKKVHAMGLKFGIHV 138 (564)
Q Consensus 64 ~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~-~k--FP~~~~~~Glk~lad~ih~~Glk~Giy~ 138 (564)
+.+.++|.+.|+|||-|..... -.+.|+. ++ .|. ++.+++.+|..|.+.+++.
T Consensus 151 ~~~~eaG~d~i~i~dp~~~~~~----------------~~is~~~~~e~~~p~------~k~i~~~i~~~~~~~~lH~ 206 (306)
T cd00465 151 KTLIEAGAKALQIHEPAFSQIN----------------SFLGPKMFKKFALPA------YKKVAEYKAAGEVPIVHHS 206 (306)
T ss_pred HHHHHhCCCEEEEecccccccC----------------CCCCHHHHHHHHHHH------HHHHHHHHhhcCCceEEEE
Confidence 3577789999999998865310 0001100 12 243 7889999998888887765
No 148
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=24.24 E-value=1e+02 Score=30.26 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCccc
Q 008464 119 GFTEVAKKVHAMGLKFGIHVMRGIST 144 (564)
Q Consensus 119 Glk~lad~ih~~Glk~Giy~~pg~~~ 144 (564)
.+..+.++||++|+|+||-+.|++..
T Consensus 93 ~~~~~i~~ik~~g~k~GialnP~T~~ 118 (201)
T PF00834_consen 93 DPKETIKYIKEAGIKAGIALNPETPV 118 (201)
T ss_dssp THHHHHHHHHHTTSEEEEEE-TTS-G
T ss_pred CHHHHHHHHHHhCCCEEEEEECCCCc
Confidence 47899999999999999999997654
No 149
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=23.97 E-value=2e+02 Score=29.93 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhCccEEEecCCCCCC--CChHHHH----HHHHHHHhC---CCCeEEEcCC
Q 008464 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDD--LDINEIS----FVSEVLKEL---DRPIVYSLSP 252 (564)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~--~~~~~y~----~m~~al~~~---gr~i~~s~s~ 252 (564)
+.|++++++.+++.|+|.|=+|+-+... .+.+.|. .++.++.+. ++..++++..
T Consensus 93 ~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~v 155 (334)
T smart00636 93 KKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGAEGKGYLLTIAV 155 (334)
T ss_pred HHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcccCCceEEEEEe
Confidence 4578999999999999999999876543 3445554 345555443 4567777764
No 150
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=23.96 E-value=2.6e+02 Score=28.38 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhCccEEEecCCCCCCCChHHH----HHHHHHHHhCC
Q 008464 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI----SFVSEVLKELD 243 (564)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y----~~m~~al~~~g 243 (564)
+.+++++.+.++++|||.|-+|+-+.. .+.+.| ..++++|++.+
T Consensus 99 ~~fv~S~~~~l~~~~fDGiDiDwE~~~-~d~~~f~~ll~~l~~~l~~~~ 146 (253)
T cd06544 99 SNAVSSLTSIIQTYNLDGIDIDYEHFP-ADPDTFVECIGQLITELKNNG 146 (253)
T ss_pred HHHHHHHHHHHHHhCCCceeeecccCC-cCHHHHHHHHHHHHHHhhhcC
Confidence 456788888999999999999997653 234444 44666666544
No 151
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=23.68 E-value=2.1e+02 Score=29.20 Aligned_cols=63 Identities=14% Similarity=0.286 Sum_probs=45.9
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCC----CCC-CChHHHHHHHHHHHhCCCCeEEEcC
Q 008464 189 MSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF----GDD-LDINEISFVSEVLKELDRPIVYSLS 251 (564)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~----~~~-~~~~~y~~m~~al~~~gr~i~~s~s 251 (564)
..||.|||=+..-=++.++--++-|+-||.+-=-. ++. +....++...+++.+.++-+|+.+.
T Consensus 69 llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVflt~G 136 (257)
T COG2099 69 LLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFLTTG 136 (257)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEEEecC
Confidence 68999999887766777777889999999987211 111 2334566677777788888888764
No 152
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=22.85 E-value=1.3e+02 Score=30.64 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.1
Q ss_pred HHHHHhhCccEEEecCC
Q 008464 206 YQQYAEWGVDFVKHDCV 222 (564)
Q Consensus 206 ~~~~a~wGvdylK~D~~ 222 (564)
++.+.++|||.|--|.+
T Consensus 274 ~~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 274 RKKLKELGVDGLIYDRI 290 (290)
T ss_pred HHHHHHcCCCEEEecCC
Confidence 56788999999988863
No 153
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=22.67 E-value=91 Score=29.47 Aligned_cols=72 Identities=13% Similarity=0.060 Sum_probs=41.2
Q ss_pred ccccCCCHHHHHHHHHHHHHhhc-c-CCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHH
Q 008464 45 SFCWTISEEEFLQSAEIISQRLR-P-HGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTE 122 (564)
Q Consensus 45 ~~~~~i~e~~i~~~ad~~~~gl~-~-~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~ 122 (564)
.|....+.+...+.|+++.+.++ . .+.-.+.||--+..... ... .... .-++.
T Consensus 56 hf~~~~~~~~a~~qA~~f~~~~~~~~~~~~~~~lD~E~~~~~~----------------~~~----~~~~-----~~~~~ 110 (181)
T PF01183_consen 56 HFARATNSSDAEAQADYFLNQVKGGDPGDLPPALDVEDDKSNN----------------PSK----SDNT-----AWVKA 110 (181)
T ss_dssp EE--TTTHCHHHHHHHHHHHCTHTSSTSCS-EEEEE-S-GGCC----------------SSH----HHHH-----HHHHH
T ss_pred EEeccCCcccHHHHHHHHHHHhcccCCCcceEEEeccccccCC----------------CCH----HHHH-----HHHHH
Confidence 34444578889999998766563 2 22334677755431100 000 0001 14789
Q ss_pred HHHHHHH-cCCeEEEEeecC
Q 008464 123 VAKKVHA-MGLKFGIHVMRG 141 (564)
Q Consensus 123 lad~ih~-~Glk~Giy~~pg 141 (564)
+.++|++ .|.+++||..+-
T Consensus 111 f~~~~~~~~G~~~~iY~~~~ 130 (181)
T PF01183_consen 111 FLDEVEKAAGYKPGIYTSKS 130 (181)
T ss_dssp HHHHHHHHCTSEEEEEEEHH
T ss_pred HHHHHHHHhCCceeEeecHH
Confidence 9999954 999999998763
No 154
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=22.62 E-value=1.7e+02 Score=30.38 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=35.7
Q ss_pred HHHH-HHHHHHHHHHHhhCccEEEec-CCCCCC----CChHHH----HHHHHHHHhCCCCeEEEcC
Q 008464 196 GAGR-AFLRSLYQQYAEWGVDFVKHD-CVFGDD----LDINEI----SFVSEVLKELDRPIVYSLS 251 (564)
Q Consensus 196 p~~~-~~~~~~~~~~a~wGvdylK~D-~~~~~~----~~~~~y----~~m~~al~~~gr~i~~s~s 251 (564)
|..+ .|++++++.++++|||.|=+| +-+... .+.+.| +.++++|.+.+..+.+++.
T Consensus 90 ~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~~~~l~~~v~ 155 (318)
T cd02876 90 EQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSANLKLILVIP 155 (318)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhcCCEEEEEEc
Confidence 4444 478999999999999999999 444321 123444 3455666655655555543
No 155
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=22.48 E-value=1.5e+02 Score=28.23 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=41.3
Q ss_pred ccccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHH
Q 008464 45 SFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVA 124 (564)
Q Consensus 45 ~~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la 124 (564)
.|.+..+.+...+.|+.+-+.++. .-.++.||--... .. ... ..++.|.
T Consensus 59 hf~~~~~~~~a~~eA~~f~~~~~~-~~~~~~lD~E~~~------------------~~-------~~~-----~~~~~f~ 107 (177)
T cd06523 59 AFARGTSTADAKAEARDFYNRANK-KPTFYVLDVEVTS------------------MS-------DMN-----AGVQAFI 107 (177)
T ss_pred EEeccCCHHHHHHHHHHHHHHhcC-CCceEEEeeccCC------------------cc-------hHH-----HHHHHHH
Confidence 344556777788888876555554 3346778732110 00 111 1589999
Q ss_pred HHHHHcCC-eEEEEeec
Q 008464 125 KKVHAMGL-KFGIHVMR 140 (564)
Q Consensus 125 d~ih~~Gl-k~Giy~~p 140 (564)
+.|++.|. ++|||+..
T Consensus 108 ~~v~~~g~~~~~lYt~~ 124 (177)
T cd06523 108 SELRRLGAKKVGLYIGH 124 (177)
T ss_pred HHHHHccCCcEEEEchH
Confidence 99999987 67999876
No 156
>TIGR03586 PseI pseudaminic acid synthase.
Probab=22.31 E-value=3.2e+02 Score=28.97 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=24.4
Q ss_pred HHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEEEcC
Q 008464 206 YQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLS 251 (564)
Q Consensus 206 ~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~~s~s 251 (564)
++.+.+.|++++|+=-. +...+. +-+.+.++|+||++|..
T Consensus 103 vd~l~~~~v~~~KI~S~-----~~~n~~-LL~~va~~gkPvilstG 142 (327)
T TIGR03586 103 VDFLESLDVPAYKIASF-----EITDLP-LIRYVAKTGKPIIMSTG 142 (327)
T ss_pred HHHHHHcCCCEEEECCc-----cccCHH-HHHHHHhcCCcEEEECC
Confidence 35567889999998532 122233 33445567778777653
No 157
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=22.15 E-value=5.5e+02 Score=25.46 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhCccEEEecCCCCCC-------CChHHHHHHHHHHH-hCCC-CeEEEcC
Q 008464 196 GAGRAFLRSLYQQYAEWGVDFVKHDCVFGDD-------LDINEISFVSEVLK-ELDR-PIVYSLS 251 (564)
Q Consensus 196 p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~-------~~~~~y~~m~~al~-~~gr-~i~~s~s 251 (564)
.+.++|.+++++.+.++|+|.|=+|+-+... .+.+.|..+-+.|+ +.+. ..++++.
T Consensus 87 ~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~~kllt~~ 151 (255)
T cd06542 87 AAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPTDKLLTID 151 (255)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 3467788999999999999999999865321 13455654444443 3443 4455554
No 158
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=22.11 E-value=52 Score=34.90 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=30.9
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCc-cEEEecCC
Q 008464 189 MSVNTKLGAGRAFLRSLYQQYAEWGV-DFVKHDCV 222 (564)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGv-dylK~D~~ 222 (564)
..+|.|||.+++..+.+...+.+-|| ++.|++.+
T Consensus 263 HvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~m 297 (410)
T KOG0410|consen 263 HVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNM 297 (410)
T ss_pred EEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHH
Confidence 68899999999999999999999999 68888754
No 159
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=21.92 E-value=1.6e+02 Score=32.27 Aligned_cols=51 Identities=29% Similarity=0.432 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhCccEEEecCC-CCCCCCh--HHH----HHHHHHHHhCCCCeEEEcCC
Q 008464 202 LRSLYQQYAEWGVDFVKHDCV-FGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (564)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~~-~~~~~~~--~~y----~~m~~al~~~gr~i~~s~s~ 252 (564)
+..++..++.=|+|+||=|-. ....+.+ +|+ +++.++-+++|+..+|..+.
T Consensus 157 ~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~Ni 214 (407)
T TIGR03332 157 LKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNL 214 (407)
T ss_pred HHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecC
Confidence 444556778889999999954 3334433 454 45666677899988877653
No 160
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=21.78 E-value=1.1e+02 Score=31.53 Aligned_cols=54 Identities=15% Similarity=0.309 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhCccEEEecCCCCCCC----ChHHHH----HHHHHHHhCC---CCeEEEcC
Q 008464 198 GRAFLRSLYQQYAEWGVDFVKHDCVFGDDL----DINEIS----FVSEVLKELD---RPIVYSLS 251 (564)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~~~~~~----~~~~y~----~m~~al~~~g---r~i~~s~s 251 (564)
.+.|++++++.+.+.|+|.|-+||-+.... +.+.|. .++.+|.+.. +.+++++.
T Consensus 100 r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~ls~a 164 (343)
T PF00704_consen 100 RQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSGKGYILSVA 164 (343)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred HHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhcccccccceeEEeec
Confidence 456889999999999999999999776433 445554 3444554432 36777775
No 161
>PLN03059 beta-galactosidase; Provisional
Probab=21.65 E-value=1.5e+03 Score=27.40 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=47.0
Q ss_pred cccCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHH
Q 008464 46 FCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAK 125 (564)
Q Consensus 46 ~~~~i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad 125 (564)
.|..+..+.+.+.+.. +|+.|++.|..==.|...++. .|.+. |.. ...|..|.+
T Consensus 52 HY~R~~p~~W~d~L~k----~Ka~GlNtV~tYV~Wn~HEp~--------------~G~~d-----F~G---~~DL~~Fl~ 105 (840)
T PLN03059 52 HYPRSTPEMWPDLIQK----AKDGGLDVIQTYVFWNGHEPS--------------PGNYY-----FED---RYDLVKFIK 105 (840)
T ss_pred ccCcCCHHHHHHHHHH----HHHcCCCeEEEEecccccCCC--------------CCeee-----ccc---hHHHHHHHH
Confidence 3456889999988764 578999999887789876542 13221 321 124778888
Q ss_pred HHHHcCCeEEEEeecCccccc
Q 008464 126 KVHAMGLKFGIHVMRGISTQA 146 (564)
Q Consensus 126 ~ih~~Glk~Giy~~pg~~~~a 146 (564)
-+++.||.+=|- ||-.-||
T Consensus 106 la~e~GLyvilR--pGPYIcA 124 (840)
T PLN03059 106 VVQAAGLYVHLR--IGPYICA 124 (840)
T ss_pred HHHHcCCEEEec--CCcceee
Confidence 888888765443 3333454
No 162
>PHA02119 hypothetical protein
Probab=21.65 E-value=88 Score=25.33 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=20.6
Q ss_pred ceeCCCCCCCCCCCCChHHHHHHHHHcCCeE
Q 008464 104 MIPDPDRWPSSRGGKGFTEVAKKVHAMGLKF 134 (564)
Q Consensus 104 ~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~ 134 (564)
+..+-.|||. .=-+.++||+++.|...
T Consensus 44 isf~~~kfp~----i~~~divdylr~lgy~~ 70 (87)
T PHA02119 44 ISFDVAKFPA----IMPKDIVDYLRSLGYDA 70 (87)
T ss_pred EEeccccCCc----cccHHHHHHHHHccchh
Confidence 4556689995 23599999999999753
No 163
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=21.56 E-value=1.6e+02 Score=31.79 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcCC
Q 008464 201 FLRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (564)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~~s~s~ 252 (564)
-+..++..++.=|+||||=|- +....+.+ ++. +++.++-+++|+..+|+.+.
T Consensus 144 ~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 202 (366)
T cd08148 144 YTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNV 202 (366)
T ss_pred HHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEc
Confidence 344556678888999999994 44344443 444 55667777899987776653
No 164
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=21.49 E-value=1.4e+02 Score=30.51 Aligned_cols=17 Identities=41% Similarity=0.401 Sum_probs=14.2
Q ss_pred HHHHHhhCccEEEecCC
Q 008464 206 YQQYAEWGVDFVKHDCV 222 (564)
Q Consensus 206 ~~~~a~wGvdylK~D~~ 222 (564)
++.+.+||||.|=-|++
T Consensus 266 ~~~l~~~GVdgIiTD~~ 282 (282)
T cd08605 266 VERQADLGVDGVIVDHV 282 (282)
T ss_pred HHHHHHcCCCEEEeCCC
Confidence 57789999999988863
No 165
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=21.46 E-value=1.7e+02 Score=26.15 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008464 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (564)
Q Consensus 50 i~e~~i~~~ad~~~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~ 129 (564)
-|-+........+++.+++.|++-+++|=+ | .+|-+ -++.|++-+++
T Consensus 66 ~n~~aa~~vG~~la~ra~~~gi~~vvfDrg----------------------~------~~yhG-----rV~a~a~~are 112 (117)
T PRK05593 66 GNKEAAKKVGKLIAERAKAKGIKQVVFDRG----------------------G------YKYHG-----RVKALADAARE 112 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEcCC----------------------C------CcccH-----HHHHHHHHHHH
Confidence 344556667777888899999999999822 1 12321 59999999999
Q ss_pred cCCeE
Q 008464 130 MGLKF 134 (564)
Q Consensus 130 ~Glk~ 134 (564)
.||+|
T Consensus 113 ~Gl~f 117 (117)
T PRK05593 113 AGLKF 117 (117)
T ss_pred hCCCC
Confidence 99986
No 166
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=21.41 E-value=1.6e+02 Score=32.09 Aligned_cols=51 Identities=20% Similarity=0.379 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcCC
Q 008464 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (564)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~~s~s~ 252 (564)
+..++..++.=|+||||=|- +....+.+ ++. ++++++-+++|+..+|+.+.
T Consensus 161 ~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 218 (406)
T cd08207 161 TAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNI 218 (406)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEec
Confidence 34455667788999999994 44444433 343 56777778899988776653
No 167
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=21.37 E-value=1.8e+02 Score=31.83 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcC
Q 008464 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (564)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~~s~s 251 (564)
+..++..++.=|+||||=|- +....+.+ +|. ++++++-+++|+..+|+.+
T Consensus 162 ~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~N 218 (412)
T TIGR03326 162 HAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLAN 218 (412)
T ss_pred HHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEE
Confidence 44556778889999999994 44444443 444 4566666889998777654
No 168
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=21.32 E-value=62 Score=39.52 Aligned_cols=49 Identities=16% Similarity=0.371 Sum_probs=33.9
Q ss_pred hccCCceEEEecccccccccCCccccCCCcccccCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeec
Q 008464 66 LRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMR 140 (564)
Q Consensus 66 l~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~lad~ih~~Glk~Giy~~p 140 (564)
|-+.||+||.++|.-... +++.+ +.-| =|+.|.+-.+++|+.||+=++-
T Consensus 256 ~~~~g~~~~~~~~~~f~~-------------------dl~~~-~~~~------~~~~l~~~~~~~~~~fgvk~~n 304 (1012)
T TIGR03315 256 MDEMGFDYIVLKEESFSH-------------------DLQYE-DAVA------MLQRLQLLAKEKGLGFGVKLTN 304 (1012)
T ss_pred HHhcCCceEecchhhccc-------------------ccchh-HHHH------HHHHHHHHHHHcCCeeeEEEec
Confidence 346799999999876653 22222 1223 2688888889999999998764
No 169
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=21.26 E-value=2.3e+02 Score=33.92 Aligned_cols=50 Identities=20% Similarity=0.086 Sum_probs=37.3
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhhC-ccEEEecCCCCCCCChHHH-HHHHHH
Q 008464 188 FMSVNTKLGAGRAFLRSLYQQYAEWG-VDFVKHDCVFGDDLDINEI-SFVSEV 238 (564)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wG-vdylK~D~~~~~~~~~~~y-~~m~~a 238 (564)
...|....|++.++...++..+.+-| ||.|++|...+- .+|..| +.++++
T Consensus 221 L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGlRIDh~dGL-~dP~~Yl~rLr~~ 272 (825)
T TIGR02401 221 LAGVRVEDPAVFDATHRLVLELVAEGLVDGLRIDHIDGL-ADPEGYLRRLREL 272 (825)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHcCCCceEEecccccc-CChHHHHHHHHHh
Confidence 46788899999999988887777777 999999986431 356666 445433
No 170
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.24 E-value=1.6e+02 Score=31.69 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=52.3
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEecccccccccCCccccCCCccc-ccCCCCceeCCCCCCCCCCCCChHHH
Q 008464 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDV-IDEWGRMIPDPDRWPSSRGGKGFTEV 123 (564)
Q Consensus 48 ~~i~e~~i~~~ad~~---~~gl~~~Gy~~i~iDdgW~~~~~~g~~~~~~~~~~-~d~~G~~~~d~~kFP~~~~~~Glk~l 123 (564)
..+|+++|.+..+.+ +...+.+||+-|.|=.+--.... +. -|+..+. .|+||--..+..||+ ..+
T Consensus 132 ~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~--qF-LSp~~N~RtDeYGGslenR~Rf~--------~ei 200 (361)
T cd04747 132 REMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLID--QF-FWAGTNRRADGYGGSLAARSRFA--------AEV 200 (361)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHH--Hh-cCCCCCCCCCCCCCCHHHHHHHH--------HHH
Confidence 469999999999866 35678899999988765510000 00 0000111 367786556656776 578
Q ss_pred HHHHHHc-C--CeEEEEeec
Q 008464 124 AKKVHAM-G--LKFGIHVMR 140 (564)
Q Consensus 124 ad~ih~~-G--lk~Giy~~p 140 (564)
++.|++. | +.+||=+.+
T Consensus 201 i~air~~vG~d~~v~vRis~ 220 (361)
T cd04747 201 VKAIRAAVGPDFPIILRFSQ 220 (361)
T ss_pred HHHHHHHcCCCCeEEEEECc
Confidence 8888885 4 777876554
No 171
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=20.99 E-value=1.6e+02 Score=31.98 Aligned_cols=50 Identities=28% Similarity=0.460 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcC
Q 008464 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (564)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~~s~s 251 (564)
+..++..++.=|+||||=|- +....+.+ +|. ++++++-+++|+..+|..+
T Consensus 142 ~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~N 198 (391)
T cd08209 142 LAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVN 198 (391)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEE
Confidence 44556677888999999994 44444443 454 4566666779998777654
No 172
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=20.76 E-value=1.6e+02 Score=32.13 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=0.0
Q ss_pred CCCCCCCCC-------C----CChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccc
Q 008464 108 PDRWPSSRG-------G----KGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGL 176 (564)
Q Consensus 108 ~~kFP~~~~-------~----~Glk~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~y~~~g~~~~~~Di~~ 176 (564)
|++|+++.+ | .|+..-.+||+++|... ||+.|.......+-+-.+.
T Consensus 8 ~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~a-iwl~Pi~~s~~~~~gY~~~---------------------- 64 (505)
T COG0366 8 PDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDA-IWLSPIFESPQADHGYDVS---------------------- 64 (505)
T ss_pred chhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCE-EEeCCCCCCCccCCCcccc----------------------
Q ss_pred cccccccCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEE
Q 008464 177 KERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFV 217 (564)
Q Consensus 177 ~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdyl 217 (564)
.++.||+ +-|+.+.++.+++...+-|+..+
T Consensus 65 ----------Dy~~id~-~~Gt~~d~~~li~~~H~~gi~vi 94 (505)
T COG0366 65 ----------DYTKVDP-HFGTEEDFKELVEEAHKRGIKVI 94 (505)
T ss_pred ----------chhhcCc-ccCCHHHHHHHHHHHHHCCCEEE
No 173
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=20.21 E-value=7.3e+02 Score=23.35 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHcCCeEEEEe
Q 008464 119 GFTEVAKKVHAMGLKFGIHV 138 (564)
Q Consensus 119 Glk~lad~ih~~Glk~Giy~ 138 (564)
-++.-.+.+++.||++|+|.
T Consensus 40 ~f~~n~~~a~~aGl~vG~Yh 59 (177)
T cd06523 40 KYKNNIKEFKKRGIPFGVYA 59 (177)
T ss_pred HHHHHHHHHHHcCCCeEEEE
Confidence 47778889999999999996
No 174
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=20.10 E-value=1.5e+02 Score=30.76 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=23.9
Q ss_pred eecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCC
Q 008464 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDD 226 (564)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~ 226 (564)
.+||..|+ +.++.+++||+|||-+--+..++
T Consensus 138 PlDp~EPe------NTAeAIasWgl~YiVlTSVDRDD 168 (360)
T KOG2672|consen 138 PLDPNEPE------NTAEAIASWGLDYIVLTSVDRDD 168 (360)
T ss_pred CCCCCCcc------cHHHHHHHcCCCeEEEEeccccc
Confidence 57888885 45688999999999987665443
Done!