Query 008465
Match_columns 564
No_of_seqs 451 out of 2787
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 12:30:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 5.4E-29 1.2E-33 256.0 24.7 292 257-548 109-408 (514)
2 PLN03200 cellulose synthase-in 100.0 2.9E-28 6.2E-33 284.2 31.9 281 255-535 11-313 (2102)
3 PLN03200 cellulose synthase-in 100.0 3.3E-27 7.1E-32 275.5 31.5 283 254-537 443-767 (2102)
4 COG5064 SRP1 Karyopherin (impo 100.0 1E-27 2.2E-32 229.0 15.4 282 255-536 112-400 (526)
5 KOG4224 Armadillo repeat prote 100.0 3.2E-27 6.9E-32 227.5 18.2 291 255-547 124-417 (550)
6 KOG4224 Armadillo repeat prote 99.9 1.3E-26 2.8E-31 223.3 20.7 283 256-540 166-452 (550)
7 KOG0166 Karyopherin (importin) 99.9 1.6E-25 3.6E-30 230.4 25.1 297 257-553 66-370 (514)
8 COG5064 SRP1 Karyopherin (impo 99.9 7.4E-26 1.6E-30 216.3 16.9 289 257-546 71-368 (526)
9 PF05804 KAP: Kinesin-associat 99.8 1.6E-18 3.5E-23 188.5 29.2 291 254-548 287-621 (708)
10 PF05804 KAP: Kinesin-associat 99.8 4.2E-18 9.2E-23 185.2 27.5 257 271-535 263-521 (708)
11 PF04564 U-box: U-box domain; 99.8 2.9E-19 6.4E-24 139.4 5.0 72 161-232 1-72 (73)
12 KOG1048 Neural adherens juncti 99.7 3.3E-15 7.1E-20 159.2 27.8 287 256-543 232-693 (717)
13 KOG4199 Uncharacterized conser 99.7 6.1E-15 1.3E-19 141.8 24.5 283 266-552 116-421 (461)
14 KOG2122 Beta-catenin-binding p 99.7 4.2E-16 9.1E-21 171.7 18.4 262 274-536 315-603 (2195)
15 KOG4199 Uncharacterized conser 99.7 3E-14 6.6E-19 137.1 25.1 279 257-536 145-446 (461)
16 PF04826 Arm_2: Armadillo-like 99.6 4.5E-14 9.8E-19 137.1 19.3 193 296-492 9-205 (254)
17 PF04826 Arm_2: Armadillo-like 99.6 1E-13 2.2E-18 134.6 20.6 194 255-453 10-207 (254)
18 smart00504 Ubox Modified RING 99.6 2.7E-15 5.8E-20 114.3 5.8 63 164-227 1-63 (63)
19 PF10508 Proteasom_PSMB: Prote 99.5 4.8E-12 1E-16 136.4 27.2 278 256-534 76-366 (503)
20 KOG2122 Beta-catenin-binding p 99.5 6.9E-13 1.5E-17 146.9 17.8 307 256-562 234-587 (2195)
21 KOG4500 Rho/Rac GTPase guanine 99.4 1.8E-11 4E-16 121.6 20.8 292 256-548 86-445 (604)
22 KOG1222 Kinesin associated pro 99.4 2.8E-10 6.1E-15 114.5 26.2 282 255-540 302-669 (791)
23 PF10508 Proteasom_PSMB: Prote 99.4 2.5E-10 5.3E-15 123.2 26.7 279 260-542 41-327 (503)
24 KOG1048 Neural adherens juncti 99.3 3E-11 6.6E-16 129.2 17.7 243 300-544 234-604 (717)
25 cd00020 ARM Armadillo/beta-cat 99.3 5.6E-11 1.2E-15 102.5 14.6 117 417-533 2-119 (120)
26 PRK09687 putative lyase; Provi 99.3 2.6E-10 5.7E-15 113.3 19.3 223 257-530 54-278 (280)
27 cd00020 ARM Armadillo/beta-cat 99.3 7.3E-11 1.6E-15 101.8 13.3 117 376-492 2-120 (120)
28 KOG1222 Kinesin associated pro 99.3 4.9E-10 1.1E-14 112.9 19.7 268 257-533 260-533 (791)
29 PRK09687 putative lyase; Provi 99.2 4.2E-10 9E-15 111.9 18.3 228 256-534 22-250 (280)
30 cd00256 VATPase_H VATPase_H, r 99.2 1.8E-09 3.9E-14 111.7 22.2 274 259-532 103-423 (429)
31 PF15227 zf-C3HC4_4: zinc fing 99.2 1.4E-11 3.1E-16 84.4 2.9 39 167-205 1-42 (42)
32 KOG4500 Rho/Rac GTPase guanine 99.1 3.1E-09 6.7E-14 106.0 18.7 280 256-536 222-521 (604)
33 KOG0168 Putative ubiquitin fus 99.1 4.6E-09 1E-13 112.4 20.4 260 256-517 166-438 (1051)
34 PF03224 V-ATPase_H_N: V-ATPas 99.1 1.5E-09 3.3E-14 110.3 14.2 229 300-528 56-308 (312)
35 PLN03208 E3 ubiquitin-protein 99.1 9.3E-11 2E-15 106.4 4.2 60 160-219 14-88 (193)
36 TIGR00599 rad18 DNA repair pro 99.0 2.6E-10 5.6E-15 116.2 6.2 71 159-230 21-91 (397)
37 PRK13800 putative oxidoreducta 99.0 7.4E-08 1.6E-12 111.4 24.3 230 255-532 619-865 (897)
38 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.7E-08 3.8E-13 102.5 16.5 221 261-482 62-304 (312)
39 PRK13800 putative oxidoreducta 98.9 8.2E-08 1.8E-12 111.0 23.1 198 299-533 621-835 (897)
40 KOG0946 ER-Golgi vesicle-tethe 98.9 5.3E-07 1.2E-11 96.3 25.9 290 255-548 20-360 (970)
41 KOG2759 Vacuolar H+-ATPase V1 98.9 2.5E-07 5.4E-12 92.8 21.2 270 259-532 116-436 (442)
42 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.5E-09 3.3E-14 73.5 2.7 38 167-205 1-39 (39)
43 KOG0287 Postreplication repair 98.8 2E-09 4.4E-14 103.4 2.7 69 161-230 20-88 (442)
44 KOG2160 Armadillo/beta-catenin 98.8 7.5E-07 1.6E-11 88.3 19.8 183 268-451 94-282 (342)
45 KOG3678 SARM protein (with ste 98.7 4.1E-07 8.9E-12 91.8 16.1 264 255-534 178-452 (832)
46 PF13445 zf-RING_UBOX: RING-ty 98.7 6.8E-09 1.5E-13 71.1 2.4 36 167-203 1-43 (43)
47 KOG2160 Armadillo/beta-catenin 98.7 1.8E-06 4E-11 85.6 20.2 182 353-534 96-283 (342)
48 cd00256 VATPase_H VATPase_H, r 98.7 1.1E-05 2.3E-10 84.0 25.4 286 256-542 52-391 (429)
49 PF14835 zf-RING_6: zf-RING of 98.7 6E-09 1.3E-13 76.0 1.0 59 163-224 6-65 (65)
50 PF01602 Adaptin_N: Adaptin N 98.7 9.2E-07 2E-11 96.9 18.6 218 258-494 80-298 (526)
51 PF00097 zf-C3HC4: Zinc finger 98.7 1.8E-08 3.8E-13 69.2 3.1 39 167-205 1-41 (41)
52 PF01602 Adaptin_N: Adaptin N 98.6 1.9E-06 4.2E-11 94.3 19.8 255 257-536 114-371 (526)
53 KOG4646 Uncharacterized conser 98.6 3.4E-07 7.4E-12 77.6 9.9 151 339-489 15-167 (173)
54 KOG0823 Predicted E3 ubiquitin 98.6 2.6E-08 5.7E-13 92.1 3.1 58 162-219 45-104 (230)
55 PHA02929 N1R/p28-like protein; 98.6 4.7E-08 1E-12 93.1 4.5 48 162-210 172-227 (238)
56 PF13920 zf-C3HC4_3: Zinc fing 98.6 4.4E-08 9.6E-13 70.4 3.2 47 163-210 1-48 (50)
57 COG5432 RAD18 RING-finger-cont 98.6 3.7E-08 8E-13 92.9 3.1 67 162-229 23-89 (391)
58 KOG0317 Predicted E3 ubiquitin 98.5 5.8E-08 1.3E-12 92.4 3.8 56 158-214 233-288 (293)
59 KOG0320 Predicted E3 ubiquitin 98.5 5.6E-08 1.2E-12 85.8 3.1 54 162-216 129-184 (187)
60 KOG1293 Proteins containing ar 98.5 1.4E-05 2.9E-10 84.6 21.0 122 421-542 418-541 (678)
61 PF11789 zf-Nse: Zinc-finger o 98.5 5.2E-08 1.1E-12 71.3 1.7 44 163-206 10-55 (57)
62 KOG2973 Uncharacterized conser 98.5 2.8E-05 6E-10 75.3 20.5 270 259-535 5-316 (353)
63 KOG4646 Uncharacterized conser 98.5 8.9E-07 1.9E-11 75.2 9.1 152 379-530 14-166 (173)
64 PF13639 zf-RING_2: Ring finge 98.4 6.5E-08 1.4E-12 67.5 1.1 40 166-206 2-44 (44)
65 KOG2171 Karyopherin (importin) 98.4 9.7E-06 2.1E-10 90.8 18.4 235 258-493 349-595 (1075)
66 PTZ00429 beta-adaptin; Provisi 98.4 5.4E-05 1.2E-09 84.6 24.4 260 257-536 68-328 (746)
67 KOG0946 ER-Golgi vesicle-tethe 98.4 0.00013 2.9E-09 78.6 25.6 287 257-543 61-409 (970)
68 cd00162 RING RING-finger (Real 98.4 2.8E-07 6E-12 64.3 4.0 43 166-208 1-44 (45)
69 KOG0168 Putative ubiquitin fus 98.4 7.4E-06 1.6E-10 88.5 16.3 217 256-474 210-437 (1051)
70 KOG4642 Chaperone-dependent E3 98.4 3.1E-06 6.7E-11 79.0 10.9 75 159-233 206-280 (284)
71 KOG1293 Proteins containing ar 98.4 1.2E-05 2.7E-10 84.9 16.5 152 352-503 389-544 (678)
72 KOG2171 Karyopherin (importin) 98.4 8.5E-05 1.8E-09 83.5 23.8 277 259-538 161-508 (1075)
73 smart00184 RING Ring finger. E 98.3 5.9E-07 1.3E-11 60.4 3.7 39 167-205 1-39 (39)
74 KOG2023 Nuclear transport rece 98.3 1.7E-05 3.7E-10 83.7 14.7 272 256-536 127-465 (885)
75 KOG0311 Predicted E3 ubiquitin 98.3 1.5E-07 3.2E-12 91.9 -0.6 70 159-228 38-109 (381)
76 PF05536 Neurochondrin: Neuroc 98.3 3.7E-05 8.1E-10 83.5 17.6 195 341-536 6-215 (543)
77 PHA02926 zinc finger-like prot 98.2 7.7E-07 1.7E-11 81.7 3.7 51 160-210 166-230 (242)
78 PTZ00429 beta-adaptin; Provisi 98.2 0.00025 5.4E-09 79.4 24.0 256 256-535 31-286 (746)
79 KOG2177 Predicted E3 ubiquitin 98.2 7.4E-07 1.6E-11 91.1 3.6 70 160-232 9-78 (386)
80 PF05536 Neurochondrin: Neuroc 98.2 8.3E-05 1.8E-09 80.8 19.2 233 257-490 5-259 (543)
81 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00063 1.4E-08 70.4 24.7 273 259-535 27-365 (371)
82 KOG1517 Guanine nucleotide bin 98.2 7.8E-05 1.7E-09 82.4 18.1 241 257-502 472-742 (1387)
83 TIGR02270 conserved hypothetic 98.2 0.00015 3.3E-09 75.8 19.8 222 257-536 54-298 (410)
84 KOG0978 E3 ubiquitin ligase in 98.2 3.5E-06 7.5E-11 91.0 7.6 55 162-216 641-695 (698)
85 TIGR00570 cdk7 CDK-activating 98.1 3.3E-06 7.1E-11 82.9 5.8 51 163-213 2-57 (309)
86 PF14634 zf-RING_5: zinc-RING 98.1 2.7E-06 5.9E-11 59.1 3.1 41 166-207 1-44 (44)
87 KOG2759 Vacuolar H+-ATPase V1 98.1 0.00051 1.1E-08 69.5 20.1 226 300-525 66-312 (442)
88 KOG2164 Predicted E3 ubiquitin 98.1 2.3E-06 4.9E-11 88.0 3.3 70 164-233 186-263 (513)
89 KOG2973 Uncharacterized conser 98.1 8.6E-05 1.9E-09 72.0 13.6 233 302-538 6-277 (353)
90 COG5574 PEX10 RING-finger-cont 98.1 2.5E-06 5.3E-11 80.5 3.0 52 161-212 212-264 (271)
91 KOG2042 Ubiquitin fusion degra 98.0 2.2E-05 4.9E-10 87.3 10.7 150 52-231 787-937 (943)
92 PF00514 Arm: Armadillo/beta-c 98.0 7.6E-06 1.6E-10 56.0 4.3 40 288-327 1-40 (41)
93 PF12348 CLASP_N: CLASP N term 98.0 5.2E-05 1.1E-09 73.4 11.7 191 350-544 17-216 (228)
94 COG5222 Uncharacterized conser 98.0 6.9E-06 1.5E-10 78.0 5.1 66 165-230 275-342 (427)
95 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.00013 2.8E-09 71.0 13.5 227 307-533 157-427 (432)
96 KOG0212 Uncharacterized conser 97.9 0.0003 6.5E-09 73.3 14.6 230 257-492 208-444 (675)
97 KOG4413 26S proteasome regulat 97.9 0.0014 3E-08 64.2 18.3 272 262-534 87-377 (524)
98 PF14664 RICTOR_N: Rapamycin-i 97.9 0.00091 2E-08 69.2 18.1 251 281-534 7-269 (371)
99 KOG2734 Uncharacterized conser 97.8 0.0045 9.8E-08 63.0 21.3 238 276-515 103-371 (536)
100 PF12678 zf-rbx1: RING-H2 zinc 97.8 1.6E-05 3.5E-10 61.8 3.2 39 167-206 22-73 (73)
101 KOG3678 SARM protein (with ste 97.8 0.0002 4.3E-09 72.9 11.7 181 292-474 173-359 (832)
102 COG1413 FOG: HEAT repeat [Ener 97.8 0.0021 4.5E-08 66.1 19.9 187 257-492 43-242 (335)
103 KOG2660 Locus-specific chromos 97.8 1.1E-05 2.4E-10 78.6 2.7 64 160-224 11-79 (331)
104 PF10165 Ric8: Guanine nucleot 97.8 0.0015 3.2E-08 69.6 19.0 259 277-536 1-339 (446)
105 PF00514 Arm: Armadillo/beta-c 97.8 4E-05 8.6E-10 52.4 4.7 41 452-492 1-41 (41)
106 KOG4413 26S proteasome regulat 97.8 0.0021 4.6E-08 63.0 17.6 293 255-548 126-453 (524)
107 KOG2023 Nuclear transport rece 97.8 0.00049 1.1E-08 73.0 14.3 265 256-534 173-505 (885)
108 KOG0297 TNF receptor-associate 97.7 2.5E-05 5.5E-10 81.3 4.3 67 160-227 17-85 (391)
109 PF12348 CLASP_N: CLASP N term 97.7 0.00032 6.9E-09 67.9 11.6 183 266-452 16-207 (228)
110 COG5369 Uncharacterized conser 97.7 0.00026 5.6E-09 73.4 10.7 261 273-533 405-740 (743)
111 KOG0212 Uncharacterized conser 97.7 0.002 4.3E-08 67.5 17.0 274 256-535 166-445 (675)
112 TIGR02270 conserved hypothetic 97.7 0.0044 9.5E-08 65.0 19.7 152 299-491 54-206 (410)
113 KOG2734 Uncharacterized conser 97.7 0.01 2.2E-07 60.6 21.2 238 255-493 123-401 (536)
114 PF13646 HEAT_2: HEAT repeats; 97.6 0.0002 4.3E-09 57.9 7.5 86 301-406 1-88 (88)
115 KOG4159 Predicted E3 ubiquitin 97.6 3.7E-05 8.1E-10 78.9 3.8 72 158-230 78-154 (398)
116 KOG1242 Protein containing ada 97.6 0.008 1.7E-07 64.0 21.1 271 256-536 133-446 (569)
117 COG1413 FOG: HEAT repeat [Ener 97.5 0.0057 1.2E-07 62.9 17.8 186 299-533 43-241 (335)
118 PF10165 Ric8: Guanine nucleot 97.5 0.016 3.4E-07 61.9 21.5 243 255-497 20-342 (446)
119 KOG1789 Endocytosis protein RM 97.5 0.036 7.8E-07 62.1 23.7 255 259-516 1773-2141(2235)
120 KOG1241 Karyopherin (importin) 97.4 0.0063 1.4E-07 65.9 17.4 272 257-537 129-438 (859)
121 PF13646 HEAT_2: HEAT repeats; 97.4 0.00055 1.2E-08 55.2 7.2 86 342-447 1-88 (88)
122 KOG1059 Vesicle coat complex A 97.4 0.011 2.4E-07 63.7 18.5 252 257-532 181-441 (877)
123 COG5152 Uncharacterized conser 97.4 6.5E-05 1.4E-09 67.4 1.6 45 165-210 197-241 (259)
124 KOG0824 Predicted E3 ubiquitin 97.4 7.4E-05 1.6E-09 71.8 2.0 49 165-213 8-56 (324)
125 COG5369 Uncharacterized conser 97.4 0.0027 5.8E-08 66.1 12.8 195 320-514 410-617 (743)
126 KOG1813 Predicted E3 ubiquitin 97.3 0.00011 2.3E-09 70.6 2.4 50 158-210 237-286 (313)
127 KOG2259 Uncharacterized conser 97.3 0.0024 5.1E-08 68.0 12.3 217 258-489 199-472 (823)
128 smart00185 ARM Armadillo/beta- 97.3 0.00057 1.2E-08 46.3 5.1 39 289-327 2-40 (41)
129 PF12861 zf-Apc11: Anaphase-pr 97.3 0.00028 6.1E-09 55.4 3.7 46 165-210 33-82 (85)
130 COG5113 UFD2 Ubiquitin fusion 97.2 0.0023 5.1E-08 67.4 10.8 72 159-231 849-921 (929)
131 KOG1241 Karyopherin (importin) 97.2 0.031 6.7E-07 60.8 19.3 291 257-554 364-688 (859)
132 COG5240 SEC21 Vesicle coat com 97.2 0.014 3E-07 61.4 15.9 264 258-536 265-557 (898)
133 KOG2879 Predicted E3 ubiquitin 97.2 0.00038 8.2E-09 66.2 4.2 49 162-210 237-287 (298)
134 PF11841 DUF3361: Domain of un 97.2 0.0079 1.7E-07 53.7 12.1 121 375-495 5-134 (160)
135 PF11841 DUF3361: Domain of un 97.2 0.01 2.2E-07 53.0 12.7 137 416-552 5-150 (160)
136 KOG3036 Protein involved in ce 97.1 0.18 3.9E-06 48.0 20.8 231 257-492 26-291 (293)
137 KOG4628 Predicted E3 ubiquitin 97.1 0.00033 7.2E-09 70.1 2.8 47 165-211 230-279 (348)
138 COG5181 HSH155 U2 snRNP splice 97.0 0.0074 1.6E-07 63.8 12.3 179 298-494 687-872 (975)
139 KOG0802 E3 ubiquitin ligase [P 97.0 0.00024 5.3E-09 77.6 1.7 47 162-209 289-340 (543)
140 COG5231 VMA13 Vacuolar H+-ATPa 97.0 0.039 8.5E-07 54.2 16.1 223 268-491 160-427 (432)
141 KOG2259 Uncharacterized conser 97.0 0.0058 1.3E-07 65.2 11.2 181 304-493 203-440 (823)
142 KOG1789 Endocytosis protein RM 97.0 0.16 3.5E-06 57.2 22.3 137 273-410 1741-1883(2235)
143 KOG1002 Nucleotide excision re 97.0 0.00035 7.6E-09 71.8 2.0 53 161-213 533-589 (791)
144 KOG1059 Vesicle coat complex A 97.0 0.41 8.9E-06 52.1 24.6 217 255-493 142-366 (877)
145 KOG1517 Guanine nucleotide bin 96.9 0.032 6.8E-07 62.7 16.5 229 316-544 484-742 (1387)
146 KOG0213 Splicing factor 3b, su 96.9 0.03 6.4E-07 60.7 15.7 277 255-534 634-954 (1172)
147 smart00185 ARM Armadillo/beta- 96.9 0.0018 3.9E-08 43.8 4.6 39 372-410 3-41 (41)
148 KOG1242 Protein containing ada 96.9 0.031 6.7E-07 59.7 15.6 243 258-517 217-465 (569)
149 PF04063 DUF383: Domain of unk 96.9 0.0064 1.4E-07 56.7 9.5 124 393-516 7-158 (192)
150 COG5540 RING-finger-containing 96.9 0.00072 1.6E-08 65.0 3.0 47 165-211 324-373 (374)
151 KOG1824 TATA-binding protein-i 96.8 0.031 6.8E-07 62.1 15.4 273 261-544 9-296 (1233)
152 KOG4151 Myosin assembly protei 96.8 0.029 6.4E-07 61.5 15.1 222 327-553 491-718 (748)
153 PF13513 HEAT_EZ: HEAT-like re 96.8 0.0022 4.8E-08 46.7 4.6 55 354-408 1-55 (55)
154 COG5243 HRD1 HRD ubiquitin lig 96.8 0.001 2.2E-08 65.6 3.4 48 162-210 285-345 (491)
155 KOG1824 TATA-binding protein-i 96.8 0.048 1E-06 60.7 16.2 234 254-498 44-292 (1233)
156 KOG1062 Vesicle coat complex A 96.7 0.13 2.7E-06 56.6 18.8 218 307-536 115-381 (866)
157 PF13764 E3_UbLigase_R4: E3 ub 96.7 0.22 4.8E-06 56.3 21.6 240 294-535 112-407 (802)
158 KOG0213 Splicing factor 3b, su 96.7 0.11 2.4E-06 56.5 17.7 230 257-494 799-1067(1172)
159 KOG1077 Vesicle coat complex A 96.7 0.52 1.1E-05 51.2 22.6 104 422-534 329-433 (938)
160 KOG1062 Vesicle coat complex A 96.7 0.2 4.4E-06 55.1 19.8 259 257-535 142-453 (866)
161 COG5096 Vesicle coat complex, 96.7 0.33 7.1E-06 54.2 21.9 142 257-411 55-196 (757)
162 PF09759 Atx10homo_assoc: Spin 96.6 0.014 3E-07 48.3 8.5 67 438-504 2-71 (102)
163 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0028 6.1E-08 46.2 3.9 55 395-449 1-55 (55)
164 KOG1061 Vesicle coat complex A 96.6 0.033 7.1E-07 60.9 13.2 244 257-518 49-293 (734)
165 PF09759 Atx10homo_assoc: Spin 96.5 0.0098 2.1E-07 49.1 7.1 71 479-549 2-74 (102)
166 KOG0826 Predicted E3 ubiquitin 96.5 0.0021 4.5E-08 62.8 3.5 53 157-210 293-346 (357)
167 COG5215 KAP95 Karyopherin (imp 96.5 0.2 4.4E-06 53.0 17.5 271 257-536 133-439 (858)
168 KOG1061 Vesicle coat complex A 96.4 0.092 2E-06 57.5 15.6 233 215-476 60-293 (734)
169 KOG0804 Cytoplasmic Zn-finger 96.3 0.0023 4.9E-08 65.1 2.7 46 162-210 173-222 (493)
170 KOG1248 Uncharacterized conser 96.3 0.18 3.9E-06 57.8 17.4 220 310-535 665-899 (1176)
171 COG5096 Vesicle coat complex, 96.3 0.095 2.1E-06 58.3 15.1 168 266-452 28-196 (757)
172 PF05004 IFRD: Interferon-rela 96.2 0.22 4.8E-06 50.4 16.5 191 343-537 46-260 (309)
173 PF04078 Rcd1: Cell differenti 96.2 0.095 2.1E-06 50.7 12.8 191 270-461 8-228 (262)
174 KOG3036 Protein involved in ce 96.2 0.18 3.9E-06 48.0 14.1 140 398-537 96-250 (293)
175 KOG0289 mRNA splicing factor [ 96.2 0.011 2.5E-07 59.8 6.6 51 165-216 1-52 (506)
176 KOG1060 Vesicle coat complex A 96.2 0.9 2E-05 50.1 21.0 208 259-491 37-245 (968)
177 KOG1078 Vesicle coat complex C 96.1 0.21 4.5E-06 54.8 16.3 257 257-534 245-532 (865)
178 COG5181 HSH155 U2 snRNP splice 96.1 0.16 3.4E-06 54.2 14.8 256 256-533 603-869 (975)
179 PF11698 V-ATPase_H_C: V-ATPas 96.1 0.027 5.8E-07 47.8 7.5 73 255-327 41-114 (119)
180 PF04641 Rtf2: Rtf2 RING-finge 96.1 0.005 1.1E-07 60.7 3.6 53 161-215 110-166 (260)
181 KOG1240 Protein kinase contain 96.1 0.38 8.2E-06 55.3 18.3 256 270-534 436-725 (1431)
182 KOG3039 Uncharacterized conser 96.0 0.0045 9.8E-08 57.9 2.7 53 163-216 220-276 (303)
183 KOG4367 Predicted Zn-finger pr 96.0 0.0027 5.8E-08 63.9 1.3 35 162-196 2-36 (699)
184 KOG0567 HEAT repeat-containing 96.0 0.69 1.5E-05 44.7 17.0 195 298-533 66-279 (289)
185 KOG4172 Predicted E3 ubiquitin 95.9 0.0019 4.1E-08 45.4 -0.3 46 165-210 8-54 (62)
186 KOG4151 Myosin assembly protei 95.8 0.29 6.3E-06 54.0 15.6 239 288-531 493-738 (748)
187 PF04078 Rcd1: Cell differenti 95.7 0.49 1.1E-05 45.9 15.0 144 394-537 8-171 (262)
188 KOG1240 Protein kinase contain 95.5 0.17 3.7E-06 58.0 12.9 235 300-545 423-696 (1431)
189 KOG2999 Regulator of Rac1, req 95.5 0.32 6.9E-06 51.4 13.8 163 341-503 84-254 (713)
190 PF08569 Mo25: Mo25-like; Int 95.5 0.17 3.6E-06 51.7 11.8 217 256-474 75-308 (335)
191 PF05004 IFRD: Interferon-rela 95.4 0.45 9.7E-06 48.2 14.7 185 306-492 50-257 (309)
192 COG5215 KAP95 Karyopherin (imp 95.4 1.9 4E-05 46.1 19.1 291 260-554 369-688 (858)
193 KOG1734 Predicted RING-contain 95.4 0.0041 8.9E-08 58.9 -0.0 56 162-217 222-288 (328)
194 KOG1077 Vesicle coat complex A 95.3 2.4 5.3E-05 46.3 19.9 245 274-534 306-587 (938)
195 PF12755 Vac14_Fab1_bd: Vacuol 95.1 0.13 2.9E-06 42.2 8.0 70 463-533 27-96 (97)
196 PF04063 DUF383: Domain of unk 95.1 0.091 2E-06 49.1 7.9 122 310-431 6-156 (192)
197 PF14668 RICTOR_V: Rapamycin-i 95.1 0.092 2E-06 40.6 6.5 66 398-463 4-70 (73)
198 KOG0828 Predicted E3 ubiquitin 95.0 0.01 2.2E-07 61.0 1.5 51 161-211 568-635 (636)
199 KOG2611 Neurochondrin/leucine- 95.0 1.4 3E-05 46.0 16.5 183 344-530 15-221 (698)
200 PF12717 Cnd1: non-SMC mitotic 94.9 1.2 2.5E-05 41.2 15.0 92 270-370 1-93 (178)
201 KOG2274 Predicted importin 9 [ 94.9 0.39 8.5E-06 53.6 13.1 181 353-536 504-691 (1005)
202 KOG3039 Uncharacterized conser 94.8 0.019 4.1E-07 53.8 2.5 37 160-196 39-75 (303)
203 KOG4653 Uncharacterized conser 94.8 0.42 9.1E-06 53.1 13.0 216 310-534 738-964 (982)
204 KOG1039 Predicted E3 ubiquitin 94.8 0.017 3.8E-07 58.4 2.4 49 162-210 159-221 (344)
205 KOG2817 Predicted E3 ubiquitin 94.8 0.021 4.6E-07 57.6 2.9 47 162-208 332-383 (394)
206 KOG2611 Neurochondrin/leucine- 94.5 3.7 8E-05 43.0 18.2 187 304-492 16-225 (698)
207 PF07814 WAPL: Wings apart-lik 94.5 0.69 1.5E-05 48.0 13.6 273 257-537 21-358 (361)
208 smart00744 RINGv The RING-vari 94.5 0.047 1E-06 38.7 3.3 41 166-206 1-49 (49)
209 KOG0211 Protein phosphatase 2A 94.4 0.85 1.8E-05 51.4 14.5 268 258-533 237-507 (759)
210 PF12755 Vac14_Fab1_bd: Vacuol 94.4 0.21 4.5E-06 41.1 7.4 90 398-490 3-94 (97)
211 PF06371 Drf_GBD: Diaphanous G 94.3 0.25 5.4E-06 45.9 9.0 76 417-492 102-187 (187)
212 PF08569 Mo25: Mo25-like; Int 94.3 1.8 3.9E-05 44.2 15.7 172 376-549 71-256 (335)
213 PF12460 MMS19_C: RNAPII trans 94.3 0.74 1.6E-05 48.8 13.6 187 257-453 189-396 (415)
214 PF12719 Cnd3: Nuclear condens 94.3 0.57 1.2E-05 47.3 12.1 168 299-474 26-208 (298)
215 PF12717 Cnd1: non-SMC mitotic 94.2 1.6 3.5E-05 40.3 13.9 92 312-411 1-93 (178)
216 KOG2999 Regulator of Rac1, req 94.2 0.95 2.1E-05 48.0 13.3 165 381-545 83-254 (713)
217 KOG1248 Uncharacterized conser 94.1 2.1 4.5E-05 49.6 16.8 221 268-493 665-899 (1176)
218 COG5209 RCD1 Uncharacterized p 94.1 1.3 2.9E-05 41.6 12.6 145 316-460 117-277 (315)
219 KOG4692 Predicted E3 ubiquitin 94.0 0.032 6.9E-07 55.0 2.3 47 163-210 421-467 (489)
220 KOG0567 HEAT repeat-containing 94.0 1.7 3.7E-05 42.0 13.7 197 255-492 65-280 (289)
221 COG5240 SEC21 Vesicle coat com 94.0 4.1 8.8E-05 43.6 17.5 111 257-374 223-337 (898)
222 KOG3800 Predicted E3 ubiquitin 93.9 0.039 8.5E-07 53.3 2.6 48 166-213 2-54 (300)
223 KOG1645 RING-finger-containing 93.9 0.034 7.5E-07 56.0 2.3 59 165-223 5-69 (463)
224 KOG0915 Uncharacterized conser 93.8 2.2 4.7E-05 50.6 16.4 207 270-477 970-1186(1702)
225 PF08045 CDC14: Cell division 93.8 0.7 1.5E-05 45.0 10.9 95 438-532 107-205 (257)
226 COG5219 Uncharacterized conser 93.7 0.023 5.1E-07 62.7 0.8 50 161-210 1466-1523(1525)
227 PF06025 DUF913: Domain of Unk 93.7 3.6 7.7E-05 42.9 16.9 221 276-514 3-253 (379)
228 PF02891 zf-MIZ: MIZ/SP-RING z 93.7 0.073 1.6E-06 37.9 3.1 44 165-208 3-50 (50)
229 PF11793 FANCL_C: FANCL C-term 93.7 0.019 4.1E-07 44.2 0.0 47 164-210 2-66 (70)
230 KOG0211 Protein phosphatase 2A 93.6 2.1 4.6E-05 48.2 15.7 267 259-534 357-625 (759)
231 PF12719 Cnd3: Nuclear condens 93.4 2.5 5.5E-05 42.5 14.9 169 257-433 26-208 (298)
232 KOG1785 Tyrosine kinase negati 93.4 0.03 6.6E-07 56.0 0.9 46 166-211 371-417 (563)
233 PF11701 UNC45-central: Myosin 93.4 0.26 5.6E-06 44.6 6.9 145 340-488 3-155 (157)
234 PF05918 API5: Apoptosis inhib 93.3 3 6.6E-05 45.2 15.8 133 257-407 23-159 (556)
235 KOG1943 Beta-tubulin folding c 93.2 6.5 0.00014 45.2 18.6 150 257-414 341-504 (1133)
236 PF11698 V-ATPase_H_C: V-ATPas 93.0 0.22 4.8E-06 42.3 5.4 71 463-533 43-114 (119)
237 COG5194 APC11 Component of SCF 93.0 0.099 2.2E-06 40.1 2.9 45 165-210 32-81 (88)
238 KOG2979 Protein involved in DN 93.0 0.095 2.1E-06 50.0 3.5 45 164-208 176-222 (262)
239 KOG2956 CLIP-associating prote 92.9 3.7 8.1E-05 42.9 14.9 184 257-450 286-476 (516)
240 KOG1493 Anaphase-promoting com 92.8 0.042 9E-07 41.7 0.7 49 162-210 29-81 (84)
241 PF12031 DUF3518: Domain of un 92.8 0.16 3.5E-06 48.3 4.7 119 314-433 81-227 (257)
242 KOG1571 Predicted E3 ubiquitin 92.7 0.071 1.5E-06 53.3 2.4 49 158-210 299-347 (355)
243 PF06371 Drf_GBD: Diaphanous G 92.7 0.86 1.9E-05 42.3 9.7 111 256-368 65-186 (187)
244 KOG0825 PHD Zn-finger protein 92.6 0.026 5.6E-07 61.2 -0.9 48 163-211 122-172 (1134)
245 PF08045 CDC14: Cell division 92.4 1.1 2.3E-05 43.8 10.0 95 274-368 108-207 (257)
246 PF06025 DUF913: Domain of Unk 92.4 5.8 0.00013 41.4 16.1 96 298-393 105-208 (379)
247 KOG1058 Vesicle coat complex C 92.4 5.3 0.00011 44.2 15.9 31 422-452 317-347 (948)
248 PF14447 Prok-RING_4: Prokaryo 92.4 0.07 1.5E-06 38.2 1.4 46 164-212 7-52 (55)
249 KOG0827 Predicted E3 ubiquitin 92.4 0.076 1.7E-06 53.2 2.1 51 163-213 3-59 (465)
250 PF13764 E3_UbLigase_R4: E3 ub 92.4 13 0.00029 42.4 19.8 178 254-434 114-331 (802)
251 PF14570 zf-RING_4: RING/Ubox 92.3 0.094 2E-06 36.6 1.8 43 167-209 1-47 (48)
252 COG5175 MOT2 Transcriptional r 92.2 0.094 2E-06 51.5 2.4 49 165-213 15-67 (480)
253 KOG1060 Vesicle coat complex A 91.9 9 0.0002 42.7 16.9 202 302-529 38-241 (968)
254 PF02985 HEAT: HEAT repeat; I 91.9 0.16 3.5E-06 32.0 2.5 28 301-328 2-29 (31)
255 KOG4265 Predicted E3 ubiquitin 91.8 0.11 2.4E-06 51.9 2.5 46 164-210 290-336 (349)
256 KOG1967 DNA repair/transcripti 91.7 1.1 2.4E-05 50.3 10.1 213 312-528 787-1018(1030)
257 KOG1058 Vesicle coat complex C 91.7 7 0.00015 43.3 15.8 203 269-495 218-466 (948)
258 PF12460 MMS19_C: RNAPII trans 91.5 5.4 0.00012 42.3 15.0 195 341-544 190-404 (415)
259 KOG1001 Helicase-like transcri 91.4 0.048 1E-06 60.6 -0.6 46 165-211 455-501 (674)
260 KOG4653 Uncharacterized conser 91.3 5.5 0.00012 44.7 14.8 188 255-451 725-918 (982)
261 PF08324 PUL: PUL domain; Int 91.3 1.4 3E-05 43.6 9.9 183 302-484 66-266 (268)
262 KOG2062 26S proteasome regulat 91.2 5.5 0.00012 44.0 14.4 93 388-495 526-621 (929)
263 PF14668 RICTOR_V: Rapamycin-i 91.2 1.5 3.3E-05 33.9 7.6 67 439-506 4-71 (73)
264 KOG0915 Uncharacterized conser 90.8 5.2 0.00011 47.6 14.6 263 258-534 819-1110(1702)
265 KOG2274 Predicted importin 9 [ 90.7 23 0.0005 40.2 18.9 224 269-500 462-697 (1005)
266 PF02985 HEAT: HEAT repeat; I 90.7 0.54 1.2E-05 29.6 4.0 28 465-492 2-29 (31)
267 KOG0414 Chromosome condensatio 90.6 1.6 3.5E-05 50.3 10.3 140 300-451 920-1064(1251)
268 PF05918 API5: Apoptosis inhib 90.5 2 4.3E-05 46.6 10.6 127 344-489 27-159 (556)
269 KOG3113 Uncharacterized conser 90.5 0.27 5.9E-06 46.5 3.5 51 162-215 109-163 (293)
270 PF12031 DUF3518: Domain of un 90.2 1.1 2.4E-05 42.7 7.4 85 437-521 139-232 (257)
271 PF14500 MMS19_N: Dos2-interac 90.1 12 0.00025 37.0 14.9 211 261-492 3-237 (262)
272 KOG1991 Nuclear transport rece 89.9 23 0.00049 40.7 18.2 233 257-494 410-673 (1010)
273 KOG1820 Microtubule-associated 89.8 4.6 0.0001 46.0 13.1 185 259-450 255-442 (815)
274 PF12530 DUF3730: Protein of u 89.8 17 0.00037 35.1 15.7 136 301-450 2-150 (234)
275 KOG0301 Phospholipase A2-activ 89.7 4.9 0.00011 43.8 12.4 167 262-433 549-727 (745)
276 KOG1820 Microtubule-associated 89.7 6.2 0.00013 45.1 13.9 185 345-535 258-444 (815)
277 KOG1788 Uncharacterized conser 89.6 7.3 0.00016 44.7 13.9 251 278-533 663-981 (2799)
278 KOG2137 Protein kinase [Signal 89.5 6.1 0.00013 43.6 13.1 132 380-520 388-523 (700)
279 KOG3665 ZYG-1-like serine/thre 89.4 9 0.0002 43.3 15.1 193 280-489 494-694 (699)
280 KOG1566 Conserved protein Mo25 89.0 12 0.00026 37.3 13.6 199 255-454 77-289 (342)
281 PF08324 PUL: PUL domain; Int 88.7 4.2 9.1E-05 40.2 10.9 146 383-528 108-268 (268)
282 KOG1243 Protein kinase [Genera 88.6 7.6 0.00016 42.7 13.1 260 263-539 260-520 (690)
283 KOG0414 Chromosome condensatio 88.6 7.1 0.00015 45.4 13.3 148 268-433 934-1082(1251)
284 KOG1967 DNA repair/transcripti 88.5 1.6 3.6E-05 49.0 8.2 147 339-486 866-1018(1030)
285 PF14500 MMS19_N: Dos2-interac 88.5 17 0.00036 35.9 14.7 220 303-536 3-239 (262)
286 PF11701 UNC45-central: Myosin 88.4 1.8 4E-05 39.1 7.3 144 260-408 6-157 (157)
287 KOG3665 ZYG-1-like serine/thre 88.0 18 0.0004 40.9 16.3 168 363-530 494-693 (699)
288 COG5209 RCD1 Uncharacterized p 87.8 1.3 2.9E-05 41.6 6.0 97 437-533 115-217 (315)
289 KOG2062 26S proteasome regulat 87.7 6.2 0.00013 43.6 11.6 126 300-439 555-682 (929)
290 KOG3161 Predicted E3 ubiquitin 87.5 0.31 6.8E-06 52.0 1.9 39 162-203 9-51 (861)
291 KOG4185 Predicted E3 ubiquitin 87.5 0.52 1.1E-05 47.5 3.5 63 165-227 4-77 (296)
292 KOG4275 Predicted E3 ubiquitin 87.3 0.15 3.2E-06 49.3 -0.6 41 164-209 300-341 (350)
293 KOG2114 Vacuolar assembly/sort 87.2 0.46 9.9E-06 52.7 3.0 43 161-207 837-880 (933)
294 PF05290 Baculo_IE-1: Baculovi 87.0 0.65 1.4E-05 39.7 3.2 51 163-213 79-135 (140)
295 PRK14707 hypothetical protein; 87.0 46 0.001 41.7 18.9 274 257-533 205-487 (2710)
296 KOG2025 Chromosome condensatio 86.6 8.8 0.00019 42.3 12.0 105 339-447 84-189 (892)
297 PRK14707 hypothetical protein; 86.5 76 0.0016 40.0 20.3 269 259-531 165-442 (2710)
298 cd03569 VHS_Hrs_Vps27p VHS dom 85.8 5.2 0.00011 35.4 8.5 74 255-328 39-114 (142)
299 COG5627 MMS21 DNA repair prote 85.5 0.71 1.5E-05 43.3 2.9 58 164-221 189-250 (275)
300 COG5109 Uncharacterized conser 85.4 0.6 1.3E-05 45.7 2.5 47 161-207 333-384 (396)
301 KOG1078 Vesicle coat complex C 85.4 25 0.00054 39.3 14.8 70 300-373 246-315 (865)
302 cd03561 VHS VHS domain family; 85.4 7.1 0.00015 34.1 9.1 74 255-328 35-112 (133)
303 PF01347 Vitellogenin_N: Lipop 84.6 14 0.00031 41.3 13.5 167 300-489 396-586 (618)
304 COG5218 YCG1 Chromosome conden 84.5 9 0.00019 41.3 10.7 105 416-528 86-193 (885)
305 PF10363 DUF2435: Protein of u 84.2 3 6.6E-05 33.9 5.8 70 257-328 3-72 (92)
306 KOG2032 Uncharacterized conser 84.2 38 0.00082 36.0 14.9 224 309-533 268-530 (533)
307 KOG1941 Acetylcholine receptor 84.0 0.41 8.9E-06 48.1 0.7 44 163-206 364-412 (518)
308 KOG4535 HEAT and armadillo rep 84.0 0.77 1.7E-05 47.9 2.6 175 356-531 407-600 (728)
309 cd03568 VHS_STAM VHS domain fa 83.8 7.3 0.00016 34.6 8.5 74 255-328 35-110 (144)
310 PF10367 Vps39_2: Vacuolar sor 83.3 0.89 1.9E-05 38.0 2.4 33 160-192 74-108 (109)
311 PF14225 MOR2-PAG1_C: Cell mor 83.3 42 0.0009 33.1 14.4 176 340-533 60-253 (262)
312 PF11707 Npa1: Ribosome 60S bi 83.1 55 0.0012 33.5 15.9 157 258-414 57-241 (330)
313 PF11865 DUF3385: Domain of un 83.1 15 0.00032 33.3 10.5 144 382-533 11-156 (160)
314 KOG2930 SCF ubiquitin ligase, 82.5 0.87 1.9E-05 36.9 1.9 27 181-208 80-106 (114)
315 COG5116 RPN2 26S proteasome re 82.1 5.5 0.00012 42.7 8.0 111 310-434 563-674 (926)
316 KOG3002 Zn finger protein [Gen 81.9 1.6 3.4E-05 43.7 3.9 60 160-226 44-104 (299)
317 PF14726 RTTN_N: Rotatin, an a 81.6 14 0.00029 30.5 8.6 68 420-487 28-95 (98)
318 smart00288 VHS Domain present 81.6 10 0.00022 33.1 8.5 74 255-328 35-111 (133)
319 cd03567 VHS_GGA VHS domain fam 81.2 11 0.00024 33.2 8.5 73 256-328 37-116 (139)
320 KOG2025 Chromosome condensatio 81.1 9.7 0.00021 42.0 9.6 128 396-530 61-189 (892)
321 KOG4535 HEAT and armadillo rep 81.0 24 0.00052 37.3 11.9 258 272-536 270-561 (728)
322 COG5220 TFB3 Cdk activating ki 81.0 0.41 9E-06 44.9 -0.5 47 163-209 9-63 (314)
323 PF11707 Npa1: Ribosome 60S bi 80.8 70 0.0015 32.7 18.3 155 301-455 58-241 (330)
324 PF14569 zf-UDP: Zinc-binding 80.7 2.1 4.6E-05 32.9 3.3 47 164-210 9-62 (80)
325 KOG0298 DEAD box-containing he 80.4 1.5 3.3E-05 51.1 3.5 44 162-206 1151-1195(1394)
326 KOG2933 Uncharacterized conser 80.3 11 0.00024 37.5 8.9 135 342-489 90-231 (334)
327 COG5098 Chromosome condensatio 79.7 6.5 0.00014 43.1 7.7 108 383-495 301-418 (1128)
328 KOG2137 Protein kinase [Signal 79.4 31 0.00068 38.3 12.9 139 296-439 386-525 (700)
329 COG5098 Chromosome condensatio 79.4 8.6 0.00019 42.2 8.5 109 424-534 301-415 (1128)
330 KOG1940 Zn-finger protein [Gen 78.3 1.3 2.9E-05 43.4 2.0 43 164-207 158-204 (276)
331 KOG4464 Signaling protein RIC- 78.2 54 0.0012 34.1 13.2 102 270-371 110-233 (532)
332 PLN03076 ARF guanine nucleotid 77.9 70 0.0015 40.2 16.6 134 310-449 1148-1297(1780)
333 PF11865 DUF3385: Domain of un 77.7 11 0.00024 34.0 7.8 144 300-450 11-156 (160)
334 smart00638 LPD_N Lipoprotein N 77.2 47 0.001 36.8 14.2 169 339-532 356-543 (574)
335 COG5116 RPN2 26S proteasome re 77.1 14 0.00031 39.6 9.2 67 421-495 550-618 (926)
336 cd03561 VHS VHS domain family; 77.0 13 0.00028 32.5 7.7 75 464-538 38-116 (133)
337 KOG1991 Nuclear transport rece 76.7 47 0.001 38.3 13.5 135 298-433 409-558 (1010)
338 PF14666 RICTOR_M: Rapamycin-i 76.7 57 0.0012 31.4 12.6 130 395-534 78-225 (226)
339 KOG2032 Uncharacterized conser 76.5 24 0.00051 37.5 10.4 149 381-534 254-416 (533)
340 KOG2933 Uncharacterized conser 75.6 19 0.00042 35.9 9.1 143 256-409 87-233 (334)
341 PF07814 WAPL: Wings apart-lik 75.6 45 0.00099 34.5 12.6 239 301-546 23-311 (361)
342 KOG2956 CLIP-associating prote 75.4 1.2E+02 0.0025 32.3 15.1 146 382-534 330-477 (516)
343 PF01347 Vitellogenin_N: Lipop 75.2 48 0.001 37.1 13.7 148 301-474 433-603 (618)
344 cd03568 VHS_STAM VHS domain fa 75.1 14 0.0003 32.8 7.5 74 464-537 38-113 (144)
345 KOG0883 Cyclophilin type, U bo 75.0 2.2 4.9E-05 43.1 2.6 50 164-214 40-89 (518)
346 KOG1943 Beta-tubulin folding c 74.9 1.8E+02 0.0039 34.2 21.9 133 312-447 441-607 (1133)
347 cd03569 VHS_Hrs_Vps27p VHS dom 74.7 17 0.00038 32.1 8.0 73 464-536 42-116 (142)
348 PF14225 MOR2-PAG1_C: Cell mor 74.6 92 0.002 30.7 15.8 213 263-492 13-254 (262)
349 smart00638 LPD_N Lipoprotein N 74.3 79 0.0017 35.0 15.0 131 341-488 394-541 (574)
350 KOG4362 Transcriptional regula 73.7 1.2 2.6E-05 49.0 0.3 51 162-212 19-71 (684)
351 PHA02825 LAP/PHD finger-like p 73.5 4.4 9.5E-05 36.1 3.7 47 163-210 7-59 (162)
352 KOG1814 Predicted E3 ubiquitin 72.8 5.3 0.00011 41.0 4.6 34 163-196 183-219 (445)
353 KOG3899 Uncharacterized conser 72.7 1.8 4E-05 41.9 1.3 32 182-213 325-368 (381)
354 KOG0301 Phospholipase A2-activ 72.4 46 0.001 36.7 11.6 159 311-474 556-727 (745)
355 PF10272 Tmpp129: Putative tra 72.3 2.4 5.1E-05 43.4 2.1 32 182-213 311-354 (358)
356 PHA02862 5L protein; Provision 72.0 3.3 7.1E-05 36.1 2.5 56 166-228 4-65 (156)
357 PRK06266 transcription initiat 71.9 14 0.00031 34.0 6.9 55 162-232 115-170 (178)
358 PF10363 DUF2435: Protein of u 71.8 17 0.00038 29.4 6.7 72 424-496 5-76 (92)
359 KOG0972 Huntingtin interacting 71.7 10 0.00023 36.9 6.1 100 26-125 243-350 (384)
360 PF05883 Baculo_RING: Baculovi 70.3 5 0.00011 34.8 3.3 44 164-208 26-78 (134)
361 PF12530 DUF3730: Protein of u 70.2 1.1E+02 0.0023 29.6 15.2 129 267-409 11-150 (234)
362 PF14446 Prok-RING_1: Prokaryo 70.2 4.2 9E-05 29.3 2.3 29 164-192 5-37 (54)
363 KOG1788 Uncharacterized conser 70.1 2.2E+02 0.0049 33.5 16.4 79 414-492 900-982 (2799)
364 PF00790 VHS: VHS domain; Int 69.9 15 0.00034 32.3 6.6 75 254-328 39-118 (140)
365 PF08167 RIX1: rRNA processing 69.7 11 0.00024 34.3 5.7 109 300-411 26-144 (165)
366 KOG1243 Protein kinase [Genera 69.4 25 0.00054 38.9 9.1 185 297-491 328-514 (690)
367 PF11864 DUF3384: Domain of un 69.4 1.7E+02 0.0036 31.5 17.6 108 271-391 4-117 (464)
368 COG1675 TFA1 Transcription ini 68.2 19 0.00041 33.0 6.8 53 162-230 111-164 (176)
369 KOG4739 Uncharacterized protei 68.1 2.8 6.1E-05 39.9 1.5 48 167-217 6-55 (233)
370 cd03572 ENTH_epsin_related ENT 67.8 19 0.0004 31.0 6.3 71 464-534 39-119 (122)
371 PF08167 RIX1: rRNA processing 67.3 18 0.00038 32.9 6.5 107 341-450 26-142 (165)
372 COG5218 YCG1 Chromosome conden 66.8 84 0.0018 34.3 11.9 101 339-443 90-191 (885)
373 smart00288 VHS Domain present 66.6 33 0.00071 29.9 7.9 73 464-536 38-113 (133)
374 cd03567 VHS_GGA VHS domain fam 66.4 28 0.00061 30.6 7.4 73 464-536 39-118 (139)
375 KOG1020 Sister chromatid cohes 66.3 62 0.0013 39.2 11.8 112 299-417 816-928 (1692)
376 PRK12495 hypothetical protein; 65.5 6.9 0.00015 36.8 3.4 33 89-122 5-37 (226)
377 PF10521 DUF2454: Protein of u 64.4 51 0.0011 32.8 9.8 70 381-450 119-202 (282)
378 PF12906 RINGv: RING-variant d 64.3 4.6 9.9E-05 28.2 1.6 39 167-205 1-47 (47)
379 PF08746 zf-RING-like: RING-li 62.8 8.5 0.00018 26.3 2.7 39 167-205 1-43 (43)
380 PF14726 RTTN_N: Rotatin, an a 62.3 52 0.0011 27.1 7.6 93 272-364 2-95 (98)
381 COG3813 Uncharacterized protei 61.1 10 0.00022 28.7 3.0 39 179-220 24-62 (84)
382 KOG1020 Sister chromatid cohes 60.5 77 0.0017 38.5 11.2 106 381-495 816-924 (1692)
383 TIGR00373 conserved hypothetic 59.9 16 0.00035 32.9 4.8 36 162-213 107-142 (158)
384 PF05605 zf-Di19: Drought indu 59.5 3.9 8.5E-05 29.5 0.6 38 163-207 1-39 (54)
385 PF13251 DUF4042: Domain of un 59.4 1E+02 0.0023 28.5 10.1 138 315-453 2-176 (182)
386 PLN02189 cellulose synthase 59.3 6.8 0.00015 45.4 2.7 47 164-210 34-87 (1040)
387 PHA03096 p28-like protein; Pro 59.2 5.8 0.00013 39.4 1.9 43 165-207 179-231 (284)
388 KOG1832 HIV-1 Vpr-binding prot 59.1 23 0.0005 40.2 6.5 130 334-463 595-785 (1516)
389 PF00790 VHS: VHS domain; Int 58.8 34 0.00075 30.0 6.7 73 464-536 43-120 (140)
390 PF10274 ParcG: Parkin co-regu 58.7 98 0.0021 28.6 9.6 73 381-453 38-111 (183)
391 COG5656 SXM1 Importin, protein 58.5 1.6E+02 0.0034 33.3 12.4 113 380-494 407-530 (970)
392 KOG4718 Non-SMC (structural ma 57.3 6.6 0.00014 36.5 1.8 46 164-210 181-227 (235)
393 PLN02436 cellulose synthase A 56.9 8 0.00017 44.9 2.8 47 164-210 36-89 (1094)
394 PF11864 DUF3384: Domain of un 56.9 2.8E+02 0.0061 29.8 17.9 258 259-533 29-329 (464)
395 KOG3579 Predicted E3 ubiquitin 56.8 4.4 9.6E-05 39.2 0.6 42 163-204 267-316 (352)
396 PF08216 CTNNBL: Catenin-beta- 56.5 12 0.00026 31.2 3.0 41 399-439 64-104 (108)
397 PF10521 DUF2454: Protein of u 56.0 69 0.0015 31.9 9.0 71 340-410 119-203 (282)
398 PF06844 DUF1244: Protein of u 55.6 7.7 0.00017 28.9 1.5 13 185-197 11-23 (68)
399 PF14353 CpXC: CpXC protein 54.9 7.6 0.00016 33.6 1.7 45 165-210 2-49 (128)
400 PLN02638 cellulose synthase A 54.7 9.5 0.00021 44.4 2.9 46 165-210 18-70 (1079)
401 KOG2034 Vacuolar sorting prote 53.8 13 0.00028 42.1 3.6 37 160-196 813-851 (911)
402 KOG2038 CAATT-binding transcri 53.5 1.5E+02 0.0032 33.5 11.3 101 381-490 304-407 (988)
403 COG5656 SXM1 Importin, protein 52.9 3.9E+02 0.0085 30.3 16.8 120 298-419 407-537 (970)
404 KOG0825 PHD Zn-finger protein 52.5 15 0.00032 40.9 3.7 39 159-197 91-136 (1134)
405 PF12830 Nipped-B_C: Sister ch 52.4 55 0.0012 30.4 7.2 70 464-538 9-78 (187)
406 KOG1812 Predicted E3 ubiquitin 52.1 10 0.00022 39.6 2.5 66 164-230 146-225 (384)
407 PLN02195 cellulose synthase A 52.1 11 0.00025 43.4 2.9 45 166-210 8-59 (977)
408 KOG1949 Uncharacterized conser 52.0 2.6E+02 0.0057 31.4 12.8 144 343-491 177-330 (1005)
409 cd00197 VHS_ENTH_ANTH VHS, ENT 51.9 1E+02 0.0023 25.7 8.3 71 256-326 36-113 (115)
410 PF05597 Phasin: Poly(hydroxya 51.1 78 0.0017 27.6 7.3 30 74-103 95-127 (132)
411 PRK04023 DNA polymerase II lar 50.7 15 0.00032 42.4 3.5 68 162-233 624-696 (1121)
412 COG2176 PolC DNA polymerase II 49.4 12 0.00027 43.7 2.7 42 158-211 908-951 (1444)
413 PLN02915 cellulose synthase A 49.3 19 0.00042 41.9 4.2 47 164-210 15-68 (1044)
414 PF07191 zinc-ribbons_6: zinc- 48.4 1.4 3E-05 33.5 -3.4 41 164-210 1-41 (70)
415 PF07800 DUF1644: Protein of u 48.3 7.6 0.00016 34.5 0.7 21 163-183 1-21 (162)
416 cd03565 VHS_Tom1 VHS domain fa 48.3 1.6E+02 0.0035 25.9 9.1 74 255-328 36-115 (141)
417 KOG1566 Conserved protein Mo25 48.0 3.1E+02 0.0067 27.7 14.6 200 334-534 73-286 (342)
418 PF08506 Cse1: Cse1; InterPro 47.7 3.5E+02 0.0075 28.2 15.3 146 379-529 208-370 (370)
419 KOG4231 Intracellular membrane 46.6 12 0.00027 39.5 2.0 68 384-451 331-399 (763)
420 COG5236 Uncharacterized conser 44.7 22 0.00048 35.6 3.3 49 162-210 59-108 (493)
421 PRK11088 rrmA 23S rRNA methylt 44.4 11 0.00024 37.3 1.3 26 164-189 2-30 (272)
422 PLN02400 cellulose synthase 44.2 12 0.00026 43.7 1.6 47 164-210 36-89 (1085)
423 PF04821 TIMELESS: Timeless pr 44.2 3.2E+02 0.007 26.9 13.1 127 256-413 12-152 (266)
424 PF04641 Rtf2: Rtf2 RING-finge 43.3 21 0.00045 35.2 3.0 35 164-198 34-69 (260)
425 KOG4231 Intracellular membrane 43.3 18 0.0004 38.3 2.6 61 474-534 339-399 (763)
426 PF11791 Aconitase_B_N: Aconit 42.8 30 0.00065 30.7 3.5 25 465-489 96-120 (154)
427 KOG4464 Signaling protein RIC- 42.5 2.2E+02 0.0047 29.9 9.9 133 342-474 47-198 (532)
428 cd00730 rubredoxin Rubredoxin; 42.5 12 0.00026 26.5 0.8 13 160-172 30-42 (50)
429 PF13251 DUF4042: Domain of un 42.1 2.5E+02 0.0055 25.9 9.7 139 397-535 2-175 (182)
430 PF04499 SAPS: SIT4 phosphatas 41.2 1.7E+02 0.0036 31.7 9.6 111 421-535 20-150 (475)
431 PF09889 DUF2116: Uncharacteri 40.9 40 0.00086 24.9 3.3 15 198-212 2-16 (59)
432 PF11791 Aconitase_B_N: Aconit 40.8 63 0.0014 28.8 5.1 66 384-449 40-121 (154)
433 PF10235 Cript: Microtubule-as 40.1 18 0.00039 29.1 1.6 37 164-210 44-80 (90)
434 PF08216 CTNNBL: Catenin-beta- 39.8 38 0.00082 28.3 3.5 41 439-479 63-103 (108)
435 KOG0309 Conserved WD40 repeat- 39.8 20 0.00043 39.8 2.3 44 164-208 1028-1074(1081)
436 smart00531 TFIIE Transcription 39.3 15 0.00033 32.6 1.2 39 162-212 97-136 (147)
437 PRK14892 putative transcriptio 38.6 26 0.00057 28.8 2.4 57 159-230 16-72 (99)
438 KOG4445 Uncharacterized conser 38.4 25 0.00054 34.6 2.5 33 164-196 115-150 (368)
439 KOG3970 Predicted E3 ubiquitin 38.4 63 0.0014 30.4 5.0 44 166-209 52-104 (299)
440 KOG2932 E3 ubiquitin ligase in 38.3 14 0.00031 36.4 0.9 44 164-210 90-134 (389)
441 cd03572 ENTH_epsin_related ENT 38.2 1.8E+02 0.0039 25.0 7.5 70 256-325 37-116 (122)
442 PF12074 DUF3554: Domain of un 38.1 4.3E+02 0.0093 26.9 11.9 48 464-515 205-254 (339)
443 PF00301 Rubredoxin: Rubredoxi 37.8 14 0.0003 25.9 0.5 13 160-172 30-42 (47)
444 KOG1949 Uncharacterized conser 37.8 6.5E+02 0.014 28.5 15.9 144 302-451 177-331 (1005)
445 PF07923 N1221: N1221-like pro 37.6 81 0.0018 31.6 6.2 59 252-310 55-127 (293)
446 KOG1087 Cytosolic sorting prot 37.3 2.3E+02 0.0051 30.4 9.7 71 256-326 37-110 (470)
447 KOG0392 SNF2 family DNA-depend 37.2 4E+02 0.0087 32.2 12.0 233 256-494 76-327 (1549)
448 cd08050 TAF6 TATA Binding Prot 37.0 2E+02 0.0044 29.5 9.2 110 382-491 211-339 (343)
449 PF14666 RICTOR_M: Rapamycin-i 36.5 3.9E+02 0.0085 25.6 10.8 127 355-491 79-224 (226)
450 COG5183 SSM4 Protein involved 36.3 32 0.0007 38.5 3.2 48 163-210 11-66 (1175)
451 KOG1609 Protein involved in mR 36.2 28 0.00061 35.1 2.8 49 164-212 78-136 (323)
452 PF06012 DUF908: Domain of Unk 36.1 87 0.0019 32.0 6.3 76 314-389 237-324 (329)
453 COG5537 IRR1 Cohesin [Cell div 35.9 2E+02 0.0043 31.6 8.8 106 260-368 278-385 (740)
454 PF03854 zf-P11: P-11 zinc fin 35.7 15 0.00032 25.6 0.4 44 165-211 3-47 (50)
455 cd00350 rubredoxin_like Rubred 35.5 18 0.0004 23.0 0.8 11 198-208 16-26 (33)
456 KOG0396 Uncharacterized conser 35.5 29 0.00063 35.3 2.6 34 177-210 346-379 (389)
457 cd00197 VHS_ENTH_ANTH VHS, ENT 35.4 1.9E+02 0.0041 24.1 7.3 70 464-533 38-114 (115)
458 PF06906 DUF1272: Protein of u 35.0 54 0.0012 23.7 3.1 29 181-212 26-54 (57)
459 PF08506 Cse1: Cse1; InterPro 32.6 4E+02 0.0087 27.7 10.5 126 356-487 227-370 (370)
460 PF12783 Sec7_N: Guanine nucle 32.4 3.5E+02 0.0075 24.3 9.1 80 416-498 67-151 (168)
461 PF10497 zf-4CXXC_R1: Zinc-fin 32.4 47 0.001 27.7 3.0 26 183-208 37-70 (105)
462 PF12231 Rif1_N: Rap1-interact 32.3 5.9E+02 0.013 26.4 15.2 132 312-449 59-202 (372)
463 PF10571 UPF0547: Uncharacteri 32.0 26 0.00056 21.1 1.0 6 167-172 3-8 (26)
464 KOG2199 Signal transducing ada 32.0 1.8E+02 0.0039 30.1 7.4 72 463-534 45-118 (462)
465 cd03565 VHS_Tom1 VHS domain fa 31.6 2.8E+02 0.0062 24.3 8.0 73 464-536 39-117 (141)
466 PF12726 SEN1_N: SEN1 N termin 31.4 3.6E+02 0.0078 30.9 10.9 153 382-535 442-609 (727)
467 PF14663 RasGEF_N_2: Rapamycin 31.4 91 0.002 26.4 4.6 39 423-461 9-47 (115)
468 COG3492 Uncharacterized protei 31.3 25 0.00054 28.0 1.1 13 185-197 42-54 (104)
469 COG1592 Rubrerythrin [Energy p 31.3 32 0.00068 31.2 1.9 12 164-175 134-145 (166)
470 PF10083 DUF2321: Uncharacteri 31.2 1.9E+02 0.0041 25.8 6.6 90 184-291 28-120 (158)
471 PRK14714 DNA polymerase II lar 31.2 40 0.00086 40.1 3.1 49 164-212 667-722 (1337)
472 cd08050 TAF6 TATA Binding Prot 31.0 3.4E+02 0.0074 27.9 9.7 109 341-449 211-338 (343)
473 PF06012 DUF908: Domain of Unk 30.8 1.8E+02 0.0038 29.7 7.5 62 438-499 238-304 (329)
474 PF06416 DUF1076: Protein of u 30.6 41 0.0009 28.0 2.3 51 162-213 38-94 (113)
475 KOG2462 C2H2-type Zn-finger pr 30.3 30 0.00065 33.8 1.7 32 165-212 188-228 (279)
476 PF14663 RasGEF_N_2: Rapamycin 30.3 1.3E+02 0.0028 25.4 5.4 39 464-503 9-47 (115)
477 PF08389 Xpo1: Exportin 1-like 30.0 2.1E+02 0.0046 24.6 7.1 48 315-368 4-53 (148)
478 KOG3268 Predicted E3 ubiquitin 29.8 40 0.00087 30.5 2.2 31 180-210 188-228 (234)
479 PF13240 zinc_ribbon_2: zinc-r 29.8 37 0.00081 19.7 1.4 8 201-208 15-22 (23)
480 PF12726 SEN1_N: SEN1 N termin 29.8 3.5E+02 0.0076 31.0 10.5 111 344-456 445-557 (727)
481 PLN03205 ATR interacting prote 29.8 1.8E+02 0.004 30.2 7.1 120 423-543 324-455 (652)
482 PF06676 DUF1178: Protein of u 29.8 24 0.00052 31.4 0.8 25 181-210 9-43 (148)
483 COG4888 Uncharacterized Zn rib 29.8 66 0.0014 26.3 3.2 64 158-232 16-82 (104)
484 COG2888 Predicted Zn-ribbon RN 29.7 31 0.00068 25.2 1.3 33 164-208 27-59 (61)
485 PLN03076 ARF guanine nucleotid 29.4 1.3E+03 0.029 29.6 17.8 260 268-534 1148-1489(1780)
486 COG3809 Uncharacterized protei 29.2 9.7 0.00021 29.4 -1.4 11 165-175 2-12 (88)
487 PF12830 Nipped-B_C: Sister ch 28.9 4.6E+02 0.01 24.1 14.3 65 258-327 9-73 (187)
488 PF07539 DRIM: Down-regulated 28.5 2.4E+02 0.0053 24.8 7.0 110 381-503 17-135 (141)
489 PF13811 DUF4186: Domain of un 28.2 41 0.00089 28.0 1.9 20 176-196 64-86 (111)
490 KOG1100 Predicted E3 ubiquitin 28.1 31 0.00068 32.6 1.4 39 167-210 161-200 (207)
491 PF04216 FdhE: Protein involve 28.1 7.4 0.00016 39.0 -3.0 45 163-208 171-220 (290)
492 KOG1815 Predicted E3 ubiquitin 27.8 40 0.00087 36.0 2.3 35 162-196 68-103 (444)
493 PF12231 Rif1_N: Rap1-interact 27.7 3.7E+02 0.0081 27.9 9.5 174 309-490 3-202 (372)
494 KOG2312 Predicted transcriptio 27.6 7.6 0.00016 42.4 -3.1 151 362-514 15-170 (847)
495 PF15616 TerY-C: TerY-C metal 26.9 25 0.00053 30.6 0.4 44 160-210 73-116 (131)
496 PF08389 Xpo1: Exportin 1-like 26.7 2E+02 0.0044 24.7 6.4 49 395-446 100-148 (148)
497 PLN03205 ATR interacting prote 25.9 5.1E+02 0.011 27.1 9.4 56 312-367 385-444 (652)
498 COG4068 Uncharacterized protei 25.9 1.1E+02 0.0024 22.3 3.4 19 198-216 7-25 (64)
499 PF06685 DUF1186: Protein of u 25.6 6.4E+02 0.014 24.6 14.2 100 300-420 32-153 (249)
500 KOG3476 Microtubule-associated 25.6 9.2 0.0002 30.0 -2.1 37 165-211 55-91 (100)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.4e-29 Score=256.04 Aligned_cols=292 Identities=23% Similarity=0.282 Sum_probs=259.5
Q ss_pred hHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCcc-ch
Q 008465 257 TKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN-KG 334 (564)
Q Consensus 257 ~~i~~Lv~~L~s-~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~-~~ 334 (564)
|.++.+|+.|.. .++..|..|+++|.+++.++.+....+++.|++|.|+.+|.+++..+++.|+|+|+|++.+... |.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 779999999975 5589999999999999999999999999999999999999999999999999999999998765 88
Q ss_pred hhhccCChHHHHHHHhcCCH-HHHHHHHHHHHhccCCcchhhHh-hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhccc
Q 008465 335 SIVSSGAVPSIVHVLRIGSM-EARENAAATLFSLSVIDENKVTI-GASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ 412 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~~~-e~~~~a~~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 412 (564)
.+.+.|++++|+.++...+. ....++.|+|.||+........+ .-..++|.|..++.+.|+.+..+|+|||.+|+.+.
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 88899999999999988754 78899999999999886433332 23478999999999999999999999999999887
Q ss_pred ChhHH-HHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCCh-hhHHHHHhcCChHHHHHHHh-cCChHHHHHHHHHHHH
Q 008465 413 GNKGK-AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLVH 489 (564)
Q Consensus 413 ~~~~~-i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~-~~~~~~k~~A~~~L~~ 489 (564)
..+.+ +++.|+++.|+.+|.+.++.++..|+.+++|++.+. ...+.+++.|+++.|..+|. +.....|..|+|+|.|
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN 348 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN 348 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 77765 559999999999999999999999999999997655 55678899999999999998 4556689999999999
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH-HHHHHHhhchhh
Q 008465 490 LCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI-EQQKQAQVQTES 548 (564)
Q Consensus 490 L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~-~~~~~~~~~~~~ 548 (564)
++.++..+.+.+++.|++|.|+.++++++.++|+.|+|++.|+.... +.+-..+.+.+.
T Consensus 349 ItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~gi 408 (514)
T KOG0166|consen 349 ITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGI 408 (514)
T ss_pred hhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999998644 555556655543
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=2.9e-28 Score=284.23 Aligned_cols=281 Identities=24% Similarity=0.298 Sum_probs=254.8
Q ss_pred hhhHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHHHHH-hCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCc
Q 008465 255 ERTKIEILLCKLTSG--SPEDQRSAAGEIRLLAKRNADNRVAIAE-AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 331 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~--~~~~~~~al~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~ 331 (564)
....+..|++.|+++ +++.+..|+..|+.+++.++++|..+++ .|+||.|+.+|.+++..++.+|+.+|.+|+.+++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 457899999999976 7899999999999999999999999997 7999999999999999999999999999999999
Q ss_pred cchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc---chhhHh-hhcCChHHHHHhhccCC---HHHHHHHHHH
Q 008465 332 NKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID---ENKVTI-GASGAIPPLVTLLSEGT---QRGKKDAATA 404 (564)
Q Consensus 332 ~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~---~~~~~i-~~~g~i~~Lv~lL~~~~---~~~~~~a~~a 404 (564)
++..|+..|++++|+++|++++++.+++|+++|++|+.++ .++..| ...|++|+|+.++++++ ..++..++.+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999874 455454 46899999999999874 3356778899
Q ss_pred HHHhhcccChhHH-HHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHHhcCC-hHHHH
Q 008465 405 LFNLCIYQGNKGK-AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNGS-PRNRE 481 (564)
Q Consensus 405 L~nL~~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~~k~ 481 (564)
|+||+.+.+++.. +++.|+|+.|+.+|.++++.++..|+++|.+++.+ ++++..+++.|+||.|+++|++++ +.+|+
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE 250 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA 250 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence 9999999999865 57999999999999999999999999999888765 679999999999999999998754 68999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCC---------HHHHHHHHHHHHHHHhh
Q 008465 482 NAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGT---------DRGKRKAAQLLERMSRF 535 (564)
Q Consensus 482 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~---------~~~k~~A~~lL~~l~~~ 535 (564)
+|+++|.|||.++++++..+++.|+++.|+.++.+++ ...++.|.|+|.||+..
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999998654 34589999999999874
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=3.3e-27 Score=275.46 Aligned_cols=283 Identities=27% Similarity=0.362 Sum_probs=252.1
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccc
Q 008465 254 AERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK 333 (564)
Q Consensus 254 ~~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~ 333 (564)
.+.++++.|+++|.+++...|..|++.|++++.++++++..+++.|+||.|+++|++++..++++|+|+|.|++.++++.
T Consensus 443 i~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qi 522 (2102)
T PLN03200 443 GGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDI 522 (2102)
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred hhhh-ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchh-------------------------------------h
Q 008465 334 GSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK-------------------------------------V 375 (564)
Q Consensus 334 ~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~-------------------------------------~ 375 (564)
..++ +.|++++|+++|++++++.++.|+++|++|+...+.. .
T Consensus 523 r~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 523 RACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 5555 7899999999999999999999999999996432211 0
Q ss_pred H-hhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh-hHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcC--
Q 008465 376 T-IGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN-KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-- 451 (564)
Q Consensus 376 ~-i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~-- 451 (564)
. ....|+++.|+++++++++.+++.|+++|.|++.+... ...++..|+|++|+.+|.+.+.+++..|+++|.+|+.
T Consensus 603 ~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 603 EGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred HhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence 1 11348999999999999999999999999999986554 5678899999999999999999999999999999984
Q ss_pred ChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008465 452 HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLER 531 (564)
Q Consensus 452 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~ 531 (564)
..+++..+++.|+|+.|+++|.+.+..+++.|+.+|.||+... +....+...|+++.|+.++++|+++.|+.|+++|..
T Consensus 683 ~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~ 761 (2102)
T PLN03200 683 KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQ 761 (2102)
T ss_pred CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 4455677889999999999999999999999999999999865 567777889999999999999999999999999999
Q ss_pred HHhhHH
Q 008465 532 MSRFIE 537 (564)
Q Consensus 532 l~~~~~ 537 (564)
|.+...
T Consensus 762 L~~~~~ 767 (2102)
T PLN03200 762 LLKHFP 767 (2102)
T ss_pred HHhCCC
Confidence 987654
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.95 E-value=1e-27 Score=229.04 Aligned_cols=282 Identities=19% Similarity=0.207 Sum_probs=250.9
Q ss_pred hhhHHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCcc-
Q 008465 255 ERTKIEILLCKLT-SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN- 332 (564)
Q Consensus 255 ~~~~i~~Lv~~L~-s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~- 332 (564)
+.|.++.+|+++. ....-.+.+|++.|.+++.+.....+.++++|+||.++.+|.+++.++++.++|+|+|++.+++.
T Consensus 112 daGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 112 DAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred hccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH
Confidence 4588999999995 45566899999999999998888888899999999999999999999999999999999998775
Q ss_pred chhhhccCChHHHHHHHhcCC--HHHHHHHHHHHHhccCCcc-hhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 008465 333 KGSIVSSGAVPSIVHVLRIGS--MEARENAAATLFSLSVIDE-NKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLC 409 (564)
Q Consensus 333 ~~~i~~~g~i~~Lv~lL~~~~--~e~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 409 (564)
|..+...|++++++.+|.+.. ..+..++.|+|.||+.... ....-.-+.++|.|.+|+.+.++++..+|+|||.+|+
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 888889999999999998774 5788999999999998742 1111122467999999999999999999999999999
Q ss_pred cccChhHH-HHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCCh-hhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHH
Q 008465 410 IYQGNKGK-AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVL 487 (564)
Q Consensus 410 ~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L 487 (564)
..+..+.. +++.|+.+.|+++|.+++..++..|+..++|+.... ...+.+++.|+++.+-.+|.+....+|..|+|+|
T Consensus 272 Dg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTi 351 (526)
T COG5064 272 DGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI 351 (526)
T ss_pred cCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheee
Confidence 98877765 558999999999999999999999999999997655 4557778999999999999988889999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008465 488 VHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 488 ~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
.|+..++.++.+.+++.+++|+|+.++..-+..+|+.|+|++.+.....
T Consensus 352 SNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg 400 (526)
T COG5064 352 SNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG 400 (526)
T ss_pred cccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999987644
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.2e-27 Score=227.46 Aligned_cols=291 Identities=25% Similarity=0.385 Sum_probs=267.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccch
Q 008465 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
.-.++..|+..+.++..++|+-++.+|.+|+. .+.+|..++..|++.+|.++-++++..+|.++..+|.|+....+||.
T Consensus 124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT-~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr 202 (550)
T KOG4224|consen 124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLAT-FDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRR 202 (550)
T ss_pred eccChHHHHHHhcCCCcEEEeeehhhhhhhhc-cccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhh
Confidence 34567888888888889999999999999996 58899999999999999999999999999999999999999999999
Q ss_pred hhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcC--ChHHHHHhhccCCHHHHHHHHHHHHHhhccc
Q 008465 335 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASG--AIPPLVTLLSEGTQRGKKDAATALFNLCIYQ 412 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 412 (564)
.++.+|++|.++.+++++++.+++.+..++.+++.+..+|+.+++.+ .++.|++++++++++++-.|..+|.||+...
T Consensus 203 ~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 203 VLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT 282 (550)
T ss_pred hhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999986 9999999999999999999999999999999
Q ss_pred ChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCC-hHHHHHHHHHHHHHh
Q 008465 413 GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS-PRNRENAAAVLVHLC 491 (564)
Q Consensus 413 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~k~~A~~~L~~L~ 491 (564)
+....++++|.+|.++++|+++.....-..+.++.|++-+|-+-..|++.|.+.+|+++|+-++ .+.|-+|+.+|+||+
T Consensus 283 ~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLA 362 (550)
T KOG4224|consen 283 EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA 362 (550)
T ss_pred hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence 9999999999999999999988888888899999999999999999999999999999999766 569999999999999
Q ss_pred cCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhhchh
Q 008465 492 AGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTE 547 (564)
Q Consensus 492 ~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~ 547 (564)
.....++..+.+.|+++.|.+|+.++...++.....++..|.- .+..|..+-+.+
T Consensus 363 asse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal-~d~~k~~lld~g 417 (550)
T KOG4224|consen 363 ASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL-NDNDKEALLDSG 417 (550)
T ss_pred hhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh-ccccHHHHhhcC
Confidence 9888999999999999999999999999999998888888873 334444444433
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-26 Score=223.29 Aligned_cols=283 Identities=23% Similarity=0.283 Sum_probs=261.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchh
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 335 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~ 335 (564)
.|.+..+.++-++.+..+|+.+...|.+++ ++.++|..++..|++|.|+.+++++|.++|+.+.+++.|++.+..+|+.
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 467888888888889999999999999998 4899999999999999999999999999999999999999999999999
Q ss_pred hhccC--ChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccC
Q 008465 336 IVSSG--AVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG 413 (564)
Q Consensus 336 i~~~g--~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 413 (564)
+++.+ .++.++.+++++++.++..|.-+|.+|+.+.++...|.+.|.+|.++++++++........+.++.|++.++-
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 99877 9999999999999999999999999999999999999999999999999998887778888999999999999
Q ss_pred hhHHHHHcCChHHHHHhccCCC-cchHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 008465 414 NKGKAVRAGVVPTLMHLLTEPG-GGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 414 ~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~ 491 (564)
|..-++++|++.+||.+|..++ .+++-+|..+|+||+. ...++..|.+.|+|+.+.+++.++.-.+++...+++..|+
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 9999999999999999998754 5599999999999987 6678899999999999999999999899998888888888
Q ss_pred cCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHH
Q 008465 492 AGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQK 540 (564)
Q Consensus 492 ~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~ 540 (564)
.++ ..+..+.+.|+++.|+.+..+.+.+++.+|+.+|-+|++..+...
T Consensus 405 l~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~Ya 452 (550)
T KOG4224|consen 405 LND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYA 452 (550)
T ss_pred hcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHH
Confidence 744 788899999999999999999999999999999999997665433
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-25 Score=230.40 Aligned_cols=297 Identities=23% Similarity=0.310 Sum_probs=259.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHh-hChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCC-ccc
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAK-RNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICE-DNK 333 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~-~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~-~~~ 333 (564)
.....++..+.|+++..|..+...++.+.. +....-..++..|+||.||.+|.. .++.+|..|.|+|.|++... +.-
T Consensus 66 ~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 66 SNLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hhhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence 347888999999999999999999998763 222234445556999999999975 56999999999999998755 446
Q ss_pred hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCH-HHHHHHHHHHHHhhcc
Q 008465 334 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQ-RGKKDAATALFNLCIY 411 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~nL~~~ 411 (564)
..++++|++|.++++|.+++..+++.|+|+|.|++.+. .+|..+...|++++|+.++...+. ...+.+.|+|.|||.+
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 66779999999999999999999999999999999886 688899999999999999988765 7889999999999998
Q ss_pred cChhHHHH-HcCChHHHHHhccCCCcchHHHHHHHHHHhcCCh-hhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHH
Q 008465 412 QGNKGKAV-RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 489 (564)
Q Consensus 412 ~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~ 489 (564)
...-..+. -..++|.|..++.+.+.++...|+++|.+|+.++ +..+.+++.|+++.|+++|...++.++..|+.++.|
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 75444333 3578999999999999999999999999999765 666788999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHhhh-cCCHHHHHHHHHHHHHHHhhHHHHHHHhhchhhHHHHH
Q 008465 490 LCAGDQQYLAEAKELGVMGPLVDLAQ-NGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQIQ 553 (564)
Q Consensus 490 L~~~~~~~~~~~~~~g~i~~L~~Ll~-~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~~~~ 553 (564)
+..+++...+.+++.|+++.|..++. +.....|+.|+|+|.|+......+.+.+.+.+.++.|-
T Consensus 306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li 370 (514)
T KOG0166|consen 306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLI 370 (514)
T ss_pred eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHH
Confidence 99999999999999999999999998 56777999999999999999999999998888776654
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.94 E-value=7.4e-26 Score=216.31 Aligned_cols=289 Identities=21% Similarity=0.240 Sum_probs=253.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHH-HhhChhhHHHHHHhCCHHHHHHhhC-CCCHHHHHHHHHHHHhcccCCccch
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLL-AKRNADNRVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L-~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
..++.|.+.|.|++.+.|..|....+.+ +++...--..++.+|.||.++.++. ....-.+..|.|+|.|++.....+.
T Consensus 71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 3568899999999999999999999985 5555555667889999999999994 4566788999999999998777766
Q ss_pred hhh-ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCH--HHHHHHHHHHHHhhc
Q 008465 335 SIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQ--RGKKDAATALFNLCI 410 (564)
Q Consensus 335 ~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~a~~aL~nL~~ 410 (564)
.++ ++|++|.++++|.+++.++++.++|+|.|++.++ .+|..+.+.|++.+++.++.+... ...+++.|+|.|||.
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 554 9999999999999999999999999999999986 578889999999999999987644 778999999999998
Q ss_pred ccChhH--HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCCh-hhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHH
Q 008465 411 YQGNKG--KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVL 487 (564)
Q Consensus 411 ~~~~~~--~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L 487 (564)
...... .-+ ..++|.|.+++...++++...|+|++..|++.+ +....+++.|..+.|+++|.+.+..++..|++.+
T Consensus 231 GknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~v 309 (526)
T COG5064 231 GKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSV 309 (526)
T ss_pred CCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhh
Confidence 754322 222 257899999999999999999999999999988 5567889999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhhch
Q 008465 488 VHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQT 546 (564)
Q Consensus 488 ~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~ 546 (564)
.|+..+++...+.++..|+++.+..|+.++..++|+.|+|.+.+++....++.+++.+.
T Consensus 310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~ 368 (526)
T COG5064 310 GNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDA 368 (526)
T ss_pred cCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998877777766543
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.84 E-value=1.6e-18 Score=188.48 Aligned_cols=291 Identities=22% Similarity=0.253 Sum_probs=245.2
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccc
Q 008465 254 AERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK 333 (564)
Q Consensus 254 ~~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~ 333 (564)
...+.++.|++.|.+++.+...-++..|.+|+. ..+|+..+.+.|+|+.|++++.+++.+++..++++|.|||.++..|
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R 365 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELR 365 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHH
Confidence 456889999999999999999999999999996 7889999999999999999999999999999999999999999999
Q ss_pred hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhccc
Q 008465 334 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQ 412 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~ 412 (564)
..|++.|++|.++.+|.+++ .+..+..+|.+||.++++|..+...+++|.+++++-++ ++++...++.++.||+.++
T Consensus 366 ~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 99999999999999998754 55679999999999999999999999999999987654 5667778888899999988
Q ss_pred ChhHHHHHcCChHHHHHh-------------------------------------ccC-CCcchHHHHHHHHHHhcCChh
Q 008465 413 GNKGKAVRAGVVPTLMHL-------------------------------------LTE-PGGGMVDEALAILAILSSHPE 454 (564)
Q Consensus 413 ~~~~~i~~~g~i~~Lv~l-------------------------------------L~~-~~~~~~~~al~~L~~L~~~~~ 454 (564)
.|...+.+.|+++.|+.. +.. .+.+....++++|+||...+.
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l 523 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL 523 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc
Confidence 888777776666655532 222 244677789999999987665
Q ss_pred hHHHHH-hcCChHHHHHHHhcCC--hHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC--CHHHHHHHHHHH
Q 008465 455 GKAAIG-AAEAVPVLVEVIGNGS--PRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG--TDRGKRKAAQLL 529 (564)
Q Consensus 455 ~~~~i~-~~g~i~~Lv~lL~~~~--~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~--~~~~k~~A~~lL 529 (564)
....++ +.+.+|.|..+|..+. +++...++..+..+|. ++.....+.+.|+++.|++++... +++..-....++
T Consensus 524 d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f 602 (708)
T PF05804_consen 524 DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVF 602 (708)
T ss_pred CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 555555 4699999999998763 6788889989998886 778888999999999999999765 688888888888
Q ss_pred HHHHhhHHHHHHHhhchhh
Q 008465 530 ERMSRFIEQQKQAQVQTES 548 (564)
Q Consensus 530 ~~l~~~~~~~~~~~~~~~~ 548 (564)
..|-.+.+.+...+...+.
T Consensus 603 ~~ll~h~~tr~~ll~~~~~ 621 (708)
T PF05804_consen 603 YQLLFHEETREVLLKETEI 621 (708)
T ss_pred HHHHcChHHHHHHHhccch
Confidence 8887777766655555443
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.82 E-value=4.2e-18 Score=185.21 Aligned_cols=257 Identities=21% Similarity=0.237 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHh
Q 008465 271 PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLR 350 (564)
Q Consensus 271 ~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~ 350 (564)
....+.++..|.+++. ++.+...+.+.|+|+.|+++|.+++.++...++++|.+||...+||..|.+.|+++.|++++.
T Consensus 263 eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 3455678888999995 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHh
Q 008465 351 IGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHL 430 (564)
Q Consensus 351 ~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~l 430 (564)
+++.+++..++.+|+|||+++..|..|...|++|.|+.+|.+++ .+..++.+|++||..+++|..+...+++|.++++
T Consensus 342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999998654 5567999999999999999999999999999998
Q ss_pred ccC-CCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Q 008465 431 LTE-PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGP 509 (564)
Q Consensus 431 L~~-~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~ 509 (564)
|.. ++..+...+++++.||+.++.+.+.+.+.|+++.|++..-.....+ ...++.|++.+++.....+. +.+..
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~--~~i~~ 494 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV--DFIGD 494 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH--HHHHH
Confidence 755 6667777889999999999999999998899999998765433222 34689999998865544443 47888
Q ss_pred HHHhhhcC-CHHHHHHHHHHHHHHHhh
Q 008465 510 LVDLAQNG-TDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 510 L~~Ll~~~-~~~~k~~A~~lL~~l~~~ 535 (564)
|+.++..+ ++...-.+.++|.||.-.
T Consensus 495 L~~~v~~~~~ee~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 495 LAKIVSSGDSEEFVVECLGILANLTIP 521 (708)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence 88888776 677888899999999743
No 11
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.77 E-value=2.9e-19 Score=139.41 Aligned_cols=72 Identities=53% Similarity=0.976 Sum_probs=63.2
Q ss_pred CCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHHcC
Q 008465 161 IPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANG 232 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~ 232 (564)
+|++|.||||+++|.|||+++|||||||.+|++|+..++.+||.|+.+++..++.||..+++.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 589999999999999999999999999999999999878999999999999999999999999999999874
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.72 E-value=3.3e-15 Score=159.19 Aligned_cols=287 Identities=23% Similarity=0.279 Sum_probs=234.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccC---Ccc
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC---EDN 332 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~---~~~ 332 (564)
...++..+.+|.+.++..|.-|...|..++.++.+.|..+...|+|+.||.+|.+...++|.+|+++|.||... .+|
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999874 357
Q ss_pred chhhhccCChHHHHHHHhc-CCHHHHHHHHHHHHhccCCcchhh------------------------------------
Q 008465 333 KGSIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKV------------------------------------ 375 (564)
Q Consensus 333 ~~~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~------------------------------------ 375 (564)
+-.|.+.++|+.++++|+. ++.++++....+|+||++.+..+.
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 8899999999999999987 589999999999999987754333
Q ss_pred -------------------Hhhhc-CChHHHHHhhcc------CCHHHHHHHHH--------------------------
Q 008465 376 -------------------TIGAS-GAIPPLVTLLSE------GTQRGKKDAAT-------------------------- 403 (564)
Q Consensus 376 -------------------~i~~~-g~i~~Lv~lL~~------~~~~~~~~a~~-------------------------- 403 (564)
++.+. |.|..|+..+.+ .+....++++-
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 22222 555665555441 12333344444
Q ss_pred ----------------------------------------------------------------------HHHHhhcccC
Q 008465 404 ----------------------------------------------------------------------ALFNLCIYQG 413 (564)
Q Consensus 404 ----------------------------------------------------------------------aL~nL~~~~~ 413 (564)
+|-||+....
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 4444443221
Q ss_pred -----hhHHH-HHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCC------hHHHH
Q 008465 414 -----NKGKA-VRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS------PRNRE 481 (564)
Q Consensus 414 -----~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~------~~~k~ 481 (564)
.+..+ .+..+.+.|+.+|..++..++..+..+|.||+.+..++..|. .++++.|++.|..+. .++-.
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~ 630 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVR 630 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHH
Confidence 22233 466788999999999999999999999999999999999888 579999999997643 46677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC-CHHHHHHHHHHHHHHHhhHHHHHHHh
Q 008465 482 NAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSRFIEQQKQAQ 543 (564)
Q Consensus 482 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~~~~~~~~~~ 543 (564)
.++.+|+++...+..+...+.+.+.++.|+.|..+. +++.-+.|..+|..|+.+.+-+...-
T Consensus 631 ~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~k 693 (717)
T KOG1048|consen 631 AVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKLK 693 (717)
T ss_pred HHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 888999999999999999999999999999999876 67999999999999998876654443
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=6.1e-15 Score=141.82 Aligned_cols=283 Identities=16% Similarity=0.193 Sum_probs=235.6
Q ss_pred HccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC--CCHHHHHHHHHHHHhccc-CCccchhhhccCCh
Q 008465 266 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST--PDSRTQEHAVTALLNLSI-CEDNKGSIVSSGAV 342 (564)
Q Consensus 266 L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~i~~~A~~~L~nLs~-~~~~~~~i~~~g~i 342 (564)
-.+++.....+++..|..+....++ +.++.+...++.+|.. ++.++....+..+..-+. ++.||..+++.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 4467788889999999988876554 5667788889998865 466777777777776654 77899999999999
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhccCCcchh----------hHhhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhc
Q 008465 343 PSIVHVLRIG-SMEARENAAATLFSLSVIDENK----------VTIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCI 410 (564)
Q Consensus 343 ~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~----------~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~ 410 (564)
+.+...|... ...+...+.+++..|..+++.| ..|...|++..|++.++-+ ++.+...++.+|..|+.
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 9999888655 4467788899999988776544 3566678999999999876 78899999999999999
Q ss_pred ccChhHHHHHcCChHHHHHhccC-CCc---chHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHh--cCChHHHHHHH
Q 008465 411 YQGNKGKAVRAGVVPTLMHLLTE-PGG---GMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG--NGSPRNRENAA 484 (564)
Q Consensus 411 ~~~~~~~i~~~g~i~~Lv~lL~~-~~~---~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~k~~A~ 484 (564)
.++.+..+.+.|++..|+.++.+ .+. .+...++..|..|+.+++.+..|++.|+.+.++.++. ..+|.+.+.++
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 99999999999999999999977 333 3557789999999999999999999999999999875 35699999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC--CHHHHHHHHHHHHHHHhhHHHHHHHhhchhhHHHH
Q 008465 485 AVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG--TDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQI 552 (564)
Q Consensus 485 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~--~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~~~ 552 (564)
.++.-||-..|++...+++.|+-...++-++.. ...++++|+++++||...+...+..+-+.+....|
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li 421 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLI 421 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHH
Confidence 999999999999999999999988888888765 45679999999999998887777776666555444
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.70 E-value=4.2e-16 Score=171.74 Aligned_cols=262 Identities=21% Similarity=0.196 Sum_probs=226.1
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC---------C---CHHHHHHHHHHHHhcccC-Cccchhhh-cc
Q 008465 274 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST---------P---DSRTQEHAVTALLNLSIC-EDNKGSIV-SS 339 (564)
Q Consensus 274 ~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~---------~---~~~i~~~A~~~L~nLs~~-~~~~~~i~-~~ 339 (564)
.+.|+..|-+++. +.++|..+.+.|++..+-+||.- . ...+|..|..+|.||.+. ..||..+. ..
T Consensus 315 lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r 393 (2195)
T KOG2122|consen 315 LCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR 393 (2195)
T ss_pred hHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence 3478888989986 89999999999999999888742 1 356899999999999885 45677777 68
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHhccCC-cc-hhhHhhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhcc-cChh
Q 008465 340 GAVPSIVHVLRIGSMEARENAAATLFSLSVI-DE-NKVTIGASGAIPPLVTLL-SEGTQRGKKDAATALFNLCIY-QGNK 415 (564)
Q Consensus 340 g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~-~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~~-~~~~ 415 (564)
|+++.+|..|.+...++.+..+.+|.||+.. +. .++.+-+.|.+..|+... +...+...+..+.|||||+.+ .+||
T Consensus 394 gfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK 473 (2195)
T KOG2122|consen 394 GFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK 473 (2195)
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence 9999999999999999999999999999976 33 455555669999988775 445667889999999999976 6789
Q ss_pred HHHHH-cCChHHHHHhccCC----CcchHHHHHHHHHHhc----CChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 008465 416 GKAVR-AGVVPTLMHLLTEP----GGGMVDEALAILAILS----SHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAV 486 (564)
Q Consensus 416 ~~i~~-~g~i~~Lv~lL~~~----~~~~~~~al~~L~~L~----~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~ 486 (564)
..|.. .|++..||.+|... ...+++.|-++|.|++ .+.+.|+.+.+.+++..|+..|++.+-.+.-+++++
T Consensus 474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGT 553 (2195)
T KOG2122|consen 474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGT 553 (2195)
T ss_pred hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhh
Confidence 88874 79999999999763 3568999999999876 456788888999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008465 487 LVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 487 L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
||||...+++..+.+++.|+++.|..|+++.+..+-+-++.+|+||-.+.
T Consensus 554 LWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 554 LWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999988665
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=3e-14 Score=137.10 Aligned_cols=279 Identities=19% Similarity=0.213 Sum_probs=233.6
Q ss_pred hHHHHHHHHHc--cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC-CHHHHHHHHHHHHhcccCCcc-
Q 008465 257 TKIEILLCKLT--SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDN- 332 (564)
Q Consensus 257 ~~i~~Lv~~L~--s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~i~~~A~~~L~nLs~~~~~- 332 (564)
.+...++..|. +.+.+.....+..++.-+..+..||..+.+.++.+.+...|... ...+.+.+.+++..|..+++-
T Consensus 145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR 224 (461)
T KOG4199|consen 145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIR 224 (461)
T ss_pred ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee
Confidence 44566666665 45677888889999999989999999999999999999766553 446778889999999876643
Q ss_pred ---------chhhhccCChHHHHHHHhcC-CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccC-CHH---HH
Q 008465 333 ---------KGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG-TQR---GK 398 (564)
Q Consensus 333 ---------~~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~---~~ 398 (564)
-..|+..|++..|++.|+-+ ++.....++.+|..|+..++.+..|.+.|++..|++++.+. +.. ..
T Consensus 225 V~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~ 304 (461)
T KOG4199|consen 225 VVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA 304 (461)
T ss_pred eecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence 34566788999999999887 78888999999999999999999999999999999999874 333 44
Q ss_pred HHHHHHHHHhhcccChhHHHHHcCChHHHHHhccC--CCcchHHHHHHHHHHhc-CChhhHHHHHhcCChHHHHHHHhcC
Q 008465 399 KDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE--PGGGMVDEALAILAILS-SHPEGKAAIGAAEAVPVLVEVIGNG 475 (564)
Q Consensus 399 ~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~al~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~~~ 475 (564)
+.++..|..|+..++++..|++.|+.+.++.++.. .+|.+...++.++..|| ..|+....+++.|+-...++-|+..
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah 384 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence 78899999999999999999999999999998743 78899999999999887 5678888899999999999999875
Q ss_pred C--hHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008465 476 S--PRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 476 ~--~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
. ..++.+|++.+.|+..++..++..++..| ++.|+......++.....|..+|+-|.-..
T Consensus 385 P~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 385 PVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGCDV 446 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence 4 67899999999999999988888888764 677777777777778888888888775433
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.61 E-value=4.5e-14 Score=137.12 Aligned_cols=193 Identities=23% Similarity=0.241 Sum_probs=171.3
Q ss_pred HHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchh
Q 008465 296 AEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK 374 (564)
Q Consensus 296 ~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~ 374 (564)
.+.+-+..|+.+|+. .|+.+++.|+.++.|.+..+.++..|.+.|+++.+..+|.++++.+++.|+.+|.||+.+.+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 556678999999986 6899999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHhhhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC
Q 008465 375 VTIGASGAIPPLVTLLSEG--TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH 452 (564)
Q Consensus 375 ~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 452 (564)
..|-. +++.+++.+.+. +..++..++++|.||+..++.+..+. +.++.++.+|..++..++..++++|.||+.+
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 88743 577777766554 67889999999999998888766654 4799999999999999999999999999999
Q ss_pred hhhHHHHHhcCChHHHHHHHhcC-ChHHHHHHHHHHHHHhc
Q 008465 453 PEGKAAIGAAEAVPVLVEVIGNG-SPRNRENAAAVLVHLCA 492 (564)
Q Consensus 453 ~~~~~~i~~~g~i~~Lv~lL~~~-~~~~k~~A~~~L~~L~~ 492 (564)
+.....++..++++.++.++... +......++.+..||..
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 56778888888899864
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.60 E-value=1e-13 Score=134.60 Aligned_cols=194 Identities=24% Similarity=0.317 Sum_probs=172.6
Q ss_pred hhhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccc
Q 008465 255 ERTKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK 333 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s-~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~ 333 (564)
+.+.++.|+..|.+ .++.+|..|+..+.+.+. .+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.+|+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 45778999999995 689999999999999875 8899999999999999999999999999999999999999999998
Q ss_pred hhhhccCChHHHHHHHhcC--CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 008465 334 GSIVSSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY 411 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 411 (564)
..|- ..++.+++.+.+. +.+++..+..+|.+|+..++++..+. +.++.++.+|.+|+..++..++++|.||+.+
T Consensus 89 ~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 8874 3577777766554 67889999999999998888877764 4799999999999999999999999999999
Q ss_pred cChhHHHHHcCChHHHHHhccC-CCcchHHHHHHHHHHhcCCh
Q 008465 412 QGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILSSHP 453 (564)
Q Consensus 412 ~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~ 453 (564)
+.+...++.++++..++.++.. .+.++...++.++.|+..+-
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999976 46788899999999997543
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.58 E-value=2.7e-15 Score=114.28 Aligned_cols=63 Identities=59% Similarity=1.000 Sum_probs=60.1
Q ss_pred CccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHH
Q 008465 164 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQW 227 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~ 227 (564)
+|.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|+.+++..++.+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999986 77899999999999999999999999988
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.52 E-value=4.8e-12 Score=136.37 Aligned_cols=278 Identities=16% Similarity=0.158 Sum_probs=224.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchh
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 335 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~ 335 (564)
....+.|...|.++++.++..+++.|.++..++......+.+.++++.++.+|.+++..+...|+.+|.+++.++.+-..
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 45678899999999999999999999999987777677788899999999999999999999999999999998888888
Q ss_pred hhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh
Q 008465 336 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 414 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 414 (564)
++..+.+..|..++...+..+|..+..++.+++..+ +....+...|.++.++..++++|.-++.+++..|..|+..+++
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG 235 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence 888888999999998888888999999999998765 4566667789999999999999999999999999999999999
Q ss_pred hHHHHHcCChHHHHHhccCC--Cc---c-hHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHH
Q 008465 415 KGKAVRAGVVPTLMHLLTEP--GG---G-MVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLV 488 (564)
Q Consensus 415 ~~~i~~~g~i~~Lv~lL~~~--~~---~-~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~ 488 (564)
...+.+.|+++.|+.++.+. ++ . ..-..+...++++........-.-...+..|.+++.+.++..+..|..++.
T Consensus 236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg 315 (503)
T PF10508_consen 236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLG 315 (503)
T ss_pred HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 99999999999999999662 22 1 223345677777774221111111235667777788889999999999999
Q ss_pred HHhcCCHHHHHHH-HHc-CC----HHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 489 HLCAGDQQYLAEA-KEL-GV----MGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 489 ~L~~~~~~~~~~~-~~~-g~----i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
.+|... +....+ ... +. +...-....++..++|..+..+|.++-.
T Consensus 316 ~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 316 QIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 999744 555555 333 23 4444445566778899999999998854
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.49 E-value=6.9e-13 Score=146.91 Aligned_cols=307 Identities=20% Similarity=0.200 Sum_probs=242.2
Q ss_pred hhHHHHHHHHHccCC---HHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHH----------HHhhCCC-------CHHH
Q 008465 256 RTKIEILLCKLTSGS---PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLL----------VGLLSTP-------DSRT 315 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~---~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~L----------v~lL~~~-------~~~i 315 (564)
.+-++.|++.|...+ .+.+..|-..|.++....++.+..-.+..+++.| ...|... ..+-
T Consensus 234 SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H 313 (2195)
T KOG2122|consen 234 SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEH 313 (2195)
T ss_pred ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccch
Confidence 467899999998644 4677888889999987666554433333333332 2223221 1233
Q ss_pred HH-HHHHHHHhcccCCccchhhhccCChHHHHHHHhc-----C-------CHHHHHHHHHHHHhccCCcc-hhhHhhhc-
Q 008465 316 QE-HAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRI-----G-------SMEARENAAATLFSLSVIDE-NKVTIGAS- 380 (564)
Q Consensus 316 ~~-~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~-----~-------~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~- 380 (564)
+. .|+.+|..++++++.|..+-+.|++..|.++|.- + ...+|.+|..+|.||.+.+. |+..+...
T Consensus 314 ~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r 393 (2195)
T KOG2122|consen 314 QLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR 393 (2195)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence 44 7888999999999999999999999999998842 1 24589999999999999975 67766554
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHhhcccC--hhHHHHHcCChHHHHHhc-cCCCcchHHHHHHHHHHhcCCh-hhH
Q 008465 381 GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG--NKGKAVRAGVVPTLMHLL-TEPGGGMVDEALAILAILSSHP-EGK 456 (564)
Q Consensus 381 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~--~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~-~~~ 456 (564)
|++..+|..|.+..+++..-.+.+|.||+=..+ .+..+-+.|-|..|+..- ...........|.+||||+.+. +++
T Consensus 394 gfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK 473 (2195)
T KOG2122|consen 394 GFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK 473 (2195)
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence 999999999999988999999999999986533 344566889999998874 4466677889999999999875 788
Q ss_pred HHHHhc-CChHHHHHHHhcC----ChHHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHH
Q 008465 457 AAIGAA-EAVPVLVEVIGNG----SPRNRENAAAVLVHLCA---GDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQL 528 (564)
Q Consensus 457 ~~i~~~-g~i~~Lv~lL~~~----~~~~k~~A~~~L~~L~~---~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~l 528 (564)
..|... |++..|+.+|.-. .-.+.+.|-+||.|+.. ....+++.+.+.+.+..|+..+++.+--+.-+++..
T Consensus 474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGT 553 (2195)
T KOG2122|consen 474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGT 553 (2195)
T ss_pred hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhh
Confidence 888775 8999999999643 35678899999999754 345788999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHhhchhhHHHHHhhhCCCCCC
Q 008465 529 LERMSRFIEQQKQAQVQTESQSQIQEARLPSNAA 562 (564)
Q Consensus 529 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (564)
|+||...+...++++++++...++-+--=+-|.|
T Consensus 554 LWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkM 587 (2195)
T KOG2122|consen 554 LWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKM 587 (2195)
T ss_pred hhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhh
Confidence 9999999999999999999988876654444444
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.42 E-value=1.8e-11 Score=121.60 Aligned_cols=292 Identities=12% Similarity=0.082 Sum_probs=232.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC----C---CHHHHHHHHHHHHhccc
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST----P---DSRTQEHAVTALLNLSI 328 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~----~---~~~i~~~A~~~L~nLs~ 328 (564)
.+.++.|.+...|++.++-.+..+.|.+++..+.++|..+.+.|+-..++++|+. + +.+.-..+...|.|-..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 4778888888899999999999999999999999999999999998888888864 2 23555567778888776
Q ss_pred CCc-cchhhhccCChHHHHHHHhcC--C--------------------------------------------HHHHHHHH
Q 008465 329 CED-NKGSIVSSGAVPSIVHVLRIG--S--------------------------------------------MEARENAA 361 (564)
Q Consensus 329 ~~~-~~~~i~~~g~i~~Lv~lL~~~--~--------------------------------------------~e~~~~a~ 361 (564)
+.+ .+.+.++.|+++.+...+.-+ + +..++...
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 554 488888999999776655322 1 12344555
Q ss_pred HHHHhccCCcchhhHhhhcCChHHHHHhhccC-C-------HHHHHHHHHHHHHhhcccChhHHHHHcC-ChHHHHHhcc
Q 008465 362 ATLFSLSVIDENKVTIGASGAIPPLVTLLSEG-T-------QRGKKDAATALFNLCIYQGNKGKAVRAG-VVPTLMHLLT 432 (564)
Q Consensus 362 ~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~-------~~~~~~a~~aL~nL~~~~~~~~~i~~~g-~i~~Lv~lL~ 432 (564)
.+|...+.++..+-.+++.|.+..++++++.- + ....+.++....-|..+++.-..+...+ ++..++..+.
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 66677777777777888889999999998762 1 1223445555555566677766676666 8999999999
Q ss_pred CCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhc-----CChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 008465 433 EPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN-----GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVM 507 (564)
Q Consensus 433 ~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i 507 (564)
+.+.+....+.-+++|+++.++....+++.+.+..|+++|.. |+.+.+..++.+|.|+.. ...+...++..|+.
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~aGvt 404 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAPAGVT 404 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccccchH
Confidence 999999999999999999999999999999999999999854 456778888999999987 33677888999999
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhhchhh
Q 008465 508 GPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTES 548 (564)
Q Consensus 508 ~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~ 548 (564)
+.++..++...|++..+-...|+++....+--..+++.+..
T Consensus 405 eaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~ 445 (604)
T KOG4500|consen 405 EAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPE 445 (604)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHH
Confidence 99999999999999999999999999988866666665443
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.8e-10 Score=114.54 Aligned_cols=282 Identities=15% Similarity=0.183 Sum_probs=204.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccch
Q 008465 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
.+..+..||+.|..++.+........|.+|+. ..+|+..+.+.|+|..|++++...+++++...+..|.|+|++...+.
T Consensus 302 rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~ 380 (791)
T KOG1222|consen 302 RKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP 380 (791)
T ss_pred HHhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH
Confidence 45788899999998888888888899999986 68899999999999999999999999999999999999999999999
Q ss_pred hhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhcc----------------------
Q 008465 335 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE---------------------- 392 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~---------------------- 392 (564)
.++..|.+|.++.+|.+.+. ...|...|..+|.++..+..+....+|+.+.+.+-+
T Consensus 381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR 458 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR 458 (791)
T ss_pred HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc
Confidence 99999999999999987643 223445555555555544433333333333322211
Q ss_pred ---------------------------------------------------------C-CHHHHHHHHHHHHHhhcccCh
Q 008465 393 ---------------------------------------------------------G-TQRGKKDAATALFNLCIYQGN 414 (564)
Q Consensus 393 ---------------------------------------------------------~-~~~~~~~a~~aL~nL~~~~~~ 414 (564)
. ++.....++.+|+||...+-.
T Consensus 459 NaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld 538 (791)
T KOG1222|consen 459 NAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD 538 (791)
T ss_pred cceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence 1 222333445555555554444
Q ss_pred hHHHH-HcCChHHHHHhccC--CCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcC--ChHHHHHHHHHHHH
Q 008465 415 KGKAV-RAGVVPTLMHLLTE--PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG--SPRNRENAAAVLVH 489 (564)
Q Consensus 415 ~~~i~-~~g~i~~Lv~lL~~--~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~k~~A~~~L~~ 489 (564)
-..++ +...||.+-..|.. ...+++-..+-.++.++....+...+..+++|+.|+++|+.. +.+..-....+...
T Consensus 539 w~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q 618 (791)
T KOG1222|consen 539 WAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQ 618 (791)
T ss_pred HHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 44444 45677777777755 234455566666677777777778888889999999999863 34455555566666
Q ss_pred HhcCCHHHHHHH-HHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHH
Q 008465 490 LCAGDQQYLAEA-KELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQK 540 (564)
Q Consensus 490 L~~~~~~~~~~~-~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~ 540 (564)
+..+. ..+..+ .+...-..|+.|+++.+.++|+-+-.+|-.+...+++=.
T Consensus 619 ~l~He-~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWA 669 (791)
T KOG1222|consen 619 FLKHE-LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWA 669 (791)
T ss_pred HHHHH-HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHH
Confidence 66653 444444 455677899999999999999999999999998776533
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.36 E-value=2.5e-10 Score=123.18 Aligned_cols=279 Identities=16% Similarity=0.173 Sum_probs=222.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCcc-chhhhc
Q 008465 260 EILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN-KGSIVS 338 (564)
Q Consensus 260 ~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~-~~~i~~ 338 (564)
+.++..|.+.+.+....++..|..+..... -. .+ ..+..+.|...|.++++.++..+++.|.+++.+... ...+.+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~-~~-~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALS-PD-SL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccC-HH-HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 347888888888888888888888775322 11 11 567789999999999999999999999999887766 444558
Q ss_pred cCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhH-H
Q 008465 339 SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG-K 417 (564)
Q Consensus 339 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~-~ 417 (564)
.+.++.++..|.+++.++...|+.+|.+|+..+.....+...+.+..|..++...+..++..+..++.+++...+.-. .
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999999999988877778888889999999988888889999999999987766544 4
Q ss_pred HHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcC--ChHH----HHHHHHHHHHHh
Q 008465 418 AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG--SPRN----RENAAAVLVHLC 491 (564)
Q Consensus 418 i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~----k~~A~~~L~~L~ 491 (564)
+.+.|+++.++..|.++|.-++..|+.+|..|+..+.+...+.+.|+++.|..++... +|+. --..+....+++
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 5578999999999998888889999999999999999999999999999999999753 2311 112224445555
Q ss_pred cCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHH
Q 008465 492 AGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQA 542 (564)
Q Consensus 492 ~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~ 542 (564)
...+...... -..++..|.+++.++++..+..|..++..+....+...--
T Consensus 278 ~~~~~~v~~~-~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L 327 (503)
T PF10508_consen 278 RVSPQEVLEL-YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLL 327 (503)
T ss_pred hcChHHHHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHH
Confidence 5443333211 1346677778888899999999999999999766554443
No 24
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.34 E-value=3e-11 Score=129.23 Aligned_cols=243 Identities=23% Similarity=0.270 Sum_probs=176.9
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHhcccC-CccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc---chhh
Q 008465 300 AIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID---ENKV 375 (564)
Q Consensus 300 ~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~---~~~~ 375 (564)
-+|-.+.+|.+.++.+|.+|..-|-.++.. ++.|..+-.-|+|+.++.+|.+.+.+++.+|+++|.||.... +|+.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 357788899999999999999999999984 456888889999999999999999999999999999999763 4888
Q ss_pred HhhhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCC--------------CcchHH
Q 008465 376 TIGASGAIPPLVTLLSE-GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEP--------------GGGMVD 440 (564)
Q Consensus 376 ~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~--------------~~~~~~ 440 (564)
.|.+.++++.++++|+. +|.++++.+..+|+||++++.-+..++.. ++..|-.-+-.+ +..+..
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeee
Confidence 99999999999999986 79999999999999999997777766642 233332221110 123344
Q ss_pred HHHHHHHHhcC-ChhhHHHHHhc-CChHHHHHHHh---------------------------------------------
Q 008465 441 EALAILAILSS-HPEGKAAIGAA-EAVPVLVEVIG--------------------------------------------- 473 (564)
Q Consensus 441 ~al~~L~~L~~-~~~~~~~i~~~-g~i~~Lv~lL~--------------------------------------------- 473 (564)
.+.++|.|++. ..++|+.+.+. |.|..|+.+++
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 45555555544 33444444332 33444433333
Q ss_pred ---------------------------------------------------------cCChHHHHHHHHHHHHHhcCCH-
Q 008465 474 ---------------------------------------------------------NGSPRNRENAAAVLVHLCAGDQ- 495 (564)
Q Consensus 474 ---------------------------------------------------------~~~~~~k~~A~~~L~~L~~~~~- 495 (564)
+..+.+.|.++.+|-||+.+..
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 1234455667777777766543
Q ss_pred ---HHHHHH-HHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 008465 496 ---QYLAEA-KELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQV 544 (564)
Q Consensus 496 ---~~~~~~-~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~ 544 (564)
..+..+ .++.+.+.|+++++.+++.+.+.++.+|+||+. +...+..+|
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~-d~rnk~lig 604 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR-DIRNKELIG 604 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc-Cchhhhhhh
Confidence 122222 567889999999999999999999999999984 344455555
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.31 E-value=5.6e-11 Score=102.50 Aligned_cols=117 Identities=24% Similarity=0.304 Sum_probs=109.9
Q ss_pred HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 008465 417 KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 495 (564)
Q Consensus 417 ~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~ 495 (564)
.+++.|+++.|+++|.+.+..++..++.+|++++.. ++....+.+.|+++.++++|.++++.++..|+++|.+|+...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467889999999999998899999999999999987 7888888999999999999999999999999999999999888
Q ss_pred HHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 008465 496 QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 496 ~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
.....+.+.|+++.|..++.+++..+++.|.++|.+|.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888899999999999999999999999999999886
No 26
>PRK09687 putative lyase; Provisional
Probab=99.28 E-value=2.6e-10 Score=113.27 Aligned_cols=223 Identities=17% Similarity=0.110 Sum_probs=138.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHh-hCCCCHHHHHHHHHHHHhcccCCccchh
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGL-LSTPDSRTQEHAVTALLNLSICEDNKGS 335 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~l-L~~~~~~i~~~A~~~L~nLs~~~~~~~~ 335 (564)
.....+...+.+.++.++..|++.|..+...... ....++.|..+ ++++++.++..|+.+|+++.......
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-- 125 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-- 125 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence 3445555555566666666666666665421100 11234555555 45566666767777776664322111
Q ss_pred hhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChh
Q 008465 336 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK 415 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 415 (564)
...+++.+...+.+.++.+|..++.+|..+. ...+++.|+.++.+.+..++..|+.+|+++....
T Consensus 126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--- 190 (280)
T PRK09687 126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--- 190 (280)
T ss_pred --chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---
Confidence 1123444555555666667776666665442 2346777777777777777777777777762211
Q ss_pred HHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 008465 416 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 495 (564)
Q Consensus 416 ~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~ 495 (564)
..+++.|+.+|.+.+..++..|+..|+.+.. ..+++.|++.|.+++ ++..|+.+|..+...
T Consensus 191 -----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-- 251 (280)
T PRK09687 191 -----PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-- 251 (280)
T ss_pred -----HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--
Confidence 1455667777777777777777777776432 246888888887655 456677777776542
Q ss_pred HHHHHHHHcCCHHHHHHhhh-cCCHHHHHHHHHHHH
Q 008465 496 QYLAEAKELGVMGPLVDLAQ-NGTDRGKRKAAQLLE 530 (564)
Q Consensus 496 ~~~~~~~~~g~i~~L~~Ll~-~~~~~~k~~A~~lL~ 530 (564)
.+++.|..++. +++.+++.+|.+.|.
T Consensus 252 ---------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 ---------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ---------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 37889999996 779999999988875
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.27 E-value=7.3e-11 Score=101.78 Aligned_cols=117 Identities=32% Similarity=0.432 Sum_probs=106.4
Q ss_pred HhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcc-cChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCCh-
Q 008465 376 TIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY-QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP- 453 (564)
Q Consensus 376 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~- 453 (564)
.+.+.|+++.|++++.+++..++..++++|.+++.. ++....+++.|+++.++++|.++++.++..|+++|++|+..+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356779999999999999999999999999999998 667778888999999999999999999999999999999877
Q ss_pred hhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 008465 454 EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 454 ~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
.....+.+.|+++.|+++|.+++..+++.|+++|.+||.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 456667888999999999999999999999999999973
No 28
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=4.9e-10 Score=112.88 Aligned_cols=268 Identities=18% Similarity=0.198 Sum_probs=211.3
Q ss_pred hHHHHHHHHHcc---CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccc
Q 008465 257 TKIEILLCKLTS---GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK 333 (564)
Q Consensus 257 ~~i~~Lv~~L~s---~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~ 333 (564)
..+..+-+.++. ......+.|+..|.+++. +......+...++|..||+.|...+.++....+..|..||...+|+
T Consensus 260 ~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK 338 (791)
T KOG1222|consen 260 EEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENK 338 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccch
Confidence 445566666553 233455677888899985 6666677888899999999999999999999999999999999999
Q ss_pred hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccC
Q 008465 334 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG 413 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 413 (564)
..+.+.|.++.++++.....++++......|+|||++...+.+++..|.+|.|..++.+++. .--|+..|+.++.++.
T Consensus 339 ~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~ 416 (791)
T KOG1222|consen 339 IVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD 416 (791)
T ss_pred HHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH
Confidence 99999999999999999999999999999999999999999999999999999999987643 2357889999999999
Q ss_pred hhHHHHHcCChHHHHHhccCC-CcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHH-hcCChHHHHHHHHHHHHHh
Q 008465 414 NKGKAVRAGVVPTLMHLLTEP-GGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVI-GNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 414 ~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~k~~A~~~L~~L~ 491 (564)
.+..+....+|+.+.+.+-.. +.++-...+..-.|||.+..+.+.+.+-.++..|++.- +..++-+ ..++.|++
T Consensus 417 ~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniS 492 (791)
T KOG1222|consen 417 AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNIS 492 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhh
Confidence 999999999999999887553 34443333434459999888888888877888887754 3344322 35678888
Q ss_pred cCCHHHHHHHHHcCCHHHHHHhhhcCCHH-HHHHHHHHHHHHH
Q 008465 492 AGDQQYLAEAKELGVMGPLVDLAQNGTDR-GKRKAAQLLERMS 533 (564)
Q Consensus 492 ~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~-~k~~A~~lL~~l~ 533 (564)
.+.+.....+++ .+..|..++.+.+++ ..-.+..+|.+|.
T Consensus 493 qHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~ 533 (791)
T KOG1222|consen 493 QHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLK 533 (791)
T ss_pred hccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcc
Confidence 877666666665 566777777766444 4556667777765
No 29
>PRK09687 putative lyase; Provisional
Probab=99.24 E-value=4.2e-10 Score=111.85 Aligned_cols=228 Identities=14% Similarity=0.098 Sum_probs=177.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchh
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 335 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~ 335 (564)
.-.++.|+..|.+.+..++..|+..|..+.. ..+++.+..++.++++.+|..|+++|+.|......
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 3457899999999999999999999987742 23567888899999999999999999998543221
Q ss_pred hhccCChHHHHHH-HhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh
Q 008465 336 IVSSGAVPSIVHV-LRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 414 (564)
Q Consensus 336 i~~~g~i~~Lv~l-L~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 414 (564)
...+++.|..+ ++..++.++..|+.+|.++....... ...++..+...+.+.+..++..++.+|.++.
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----- 156 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----- 156 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----
Confidence 22356777777 56678999999999999986433211 1234566778888889999999999997553
Q ss_pred hHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 008465 415 KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 415 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~ 494 (564)
...+++.|+.+|.++++.++..|+..|+.+.... ..+++.|+..|.+.++.+|..|+..|..+-..
T Consensus 157 -----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~- 222 (280)
T PRK09687 157 -----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKDK- 222 (280)
T ss_pred -----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-
Confidence 2347899999999999999999999999884321 24678899999999999999999999875431
Q ss_pred HHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 495 QQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 495 ~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
.+++.|+..+.+++ ++..|..+|..+..
T Consensus 223 ----------~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 223 ----------RVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred ----------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 48889999988876 45567777777665
No 30
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.22 E-value=1.8e-09 Score=111.75 Aligned_cols=274 Identities=14% Similarity=0.090 Sum_probs=205.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC-CHHHHHHHHHHHHhcccCCccchhhh
Q 008465 259 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDNKGSIV 337 (564)
Q Consensus 259 i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~i~~~A~~~L~nLs~~~~~~~~i~ 337 (564)
...++..|..++.-++..|+..|..+...++.+.......-....|...|+++ +...+..++.+|..|...++.|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 45677788888999999999999998765443221111111334556666654 57788889999999999999999999
Q ss_pred ccCChHHHHHHHhcC--CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcccC-
Q 008465 338 SSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQG- 413 (564)
Q Consensus 338 ~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~- 413 (564)
+.++++.|+.+|+.. +.+++..++-+++-||+.++....+...+.|+.|+++++.. .+++.+-++.+|.||.....
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 888999999999764 56899999999999999988777777779999999999875 57899999999999988542
Q ss_pred ------hhHHHHHcCChHHHHHhccC--CCcchHHHHHHH-------HHHhcCChh------------------------
Q 008465 414 ------NKGKAVRAGVVPTLMHLLTE--PGGGMVDEALAI-------LAILSSHPE------------------------ 454 (564)
Q Consensus 414 ------~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~al~~-------L~~L~~~~~------------------------ 454 (564)
....++..|+.+.+-.+-.. .++++.+..-.+ +..+++.++
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 23456676776655444433 555554432221 123333222
Q ss_pred hHHHHHhcC--ChHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008465 455 GKAAIGAAE--AVPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLER 531 (564)
Q Consensus 455 ~~~~i~~~g--~i~~Lv~lL~-~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~ 531 (564)
+...+.+.+ ++..|+++|. +.++.+..-|+.=|..++...|..+..+-+.|+-..+++++.+.++++|..|..+++-
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 333343333 5789999995 4567777788888999999988888888899999999999999999999999998876
Q ss_pred H
Q 008465 532 M 532 (564)
Q Consensus 532 l 532 (564)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 5
No 31
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.17 E-value=1.4e-11 Score=84.43 Aligned_cols=39 Identities=41% Similarity=0.934 Sum_probs=31.0
Q ss_pred CcccccCCCCCEEcCCCCcccHHHHHHHHHhCC---CCCCCC
Q 008465 167 CPISLELMKDPVIVSTGQTYERSCIEKWLEAGH---RTCPKT 205 (564)
Q Consensus 167 Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~---~~CP~~ 205 (564)
||||+++|++||+++|||+||+.||.+|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998532 468876
No 32
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.14 E-value=3.1e-09 Score=106.01 Aligned_cols=280 Identities=14% Similarity=0.090 Sum_probs=216.8
Q ss_pred hhHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CCH-------HHHHHHHHHHHhc
Q 008465 256 RTKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDS-------RTQEHAVTALLNL 326 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~-~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~-------~i~~~A~~~L~nL 326 (564)
......+++.+.+. +++...-.+..|...+ +++..+-.+++.|.+..++.+++. ++. ..-..+.....-|
T Consensus 222 ~sl~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vll 300 (604)
T KOG4500|consen 222 CSLVFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLL 300 (604)
T ss_pred chHHHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhh
Confidence 35567777777653 4445555566666666 588889999999999999999976 221 1222333333344
Q ss_pred ccCCccchhhhccC-ChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhcc-----CCHHHHHH
Q 008465 327 SICEDNKGSIVSSG-AVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE-----GTQRGKKD 400 (564)
Q Consensus 327 s~~~~~~~~i~~~g-~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~ 400 (564)
...++.-..+...+ .+..++..+.+.+....-.++-++.|++..+.+..++++.+++..|++.+.. |+.+.+..
T Consensus 301 ltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA 380 (604)
T KOG4500|consen 301 LTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHA 380 (604)
T ss_pred hcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHH
Confidence 44455555555555 8999999999999999999999999999999999999999999999999964 46788899
Q ss_pred HHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChh-hHHHHHhc-CChHHHHHHHhcCCh-
Q 008465 401 AATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE-GKAAIGAA-EAVPVLVEVIGNGSP- 477 (564)
Q Consensus 401 a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~-~~~~i~~~-g~i~~Lv~lL~~~~~- 477 (564)
++.||.||.....||..++.+|+++.++.++....+.++-.-++.|..+....+ ...++.+. ..+..|+++-++.+-
T Consensus 381 ~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~a 460 (604)
T KOG4500|consen 381 CLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFA 460 (604)
T ss_pred HHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccc
Confidence 999999999999999999999999999999998888898888888887766554 33444443 467888888887663
Q ss_pred HHHHHHHHHHHHHhcCCH--HHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008465 478 RNRENAAAVLVHLCAGDQ--QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 478 ~~k~~A~~~L~~L~~~~~--~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
.+--..-+.|..+..++. .....+-+.|++..++.++...+-..+..|.-+|..+....
T Consensus 461 Gv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~y 521 (604)
T KOG4500|consen 461 GVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKY 521 (604)
T ss_pred hhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHh
Confidence 366667778888877642 34456667899999999999998889999988887776544
No 33
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4.6e-09 Score=112.37 Aligned_cols=260 Identities=17% Similarity=0.182 Sum_probs=208.3
Q ss_pred hhHHHHHHHHHccC-CHHHHHHHHHHHHHH-HhhChhhHHHHHHhCCHHHHHHhhCCC-CHHHHHHHHHHHHhccc-CCc
Q 008465 256 RTKIEILLCKLTSG-SPEDQRSAAGEIRLL-AKRNADNRVAIAEAGAIPLLVGLLSTP-DSRTQEHAVTALLNLSI-CED 331 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~-~~~~~~~al~~L~~L-~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~i~~~A~~~L~nLs~-~~~ 331 (564)
.+.+..|++.|... ++..|.+|+.+|..+ .-.+.+.-..+--..+||.|+.+|+.+ +.+++..|+++|.+|+. .++
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 35788999999875 899999999998864 445555555555556899999999985 79999999999999986 456
Q ss_pred cchhhhccCChHHHHHHHhc-CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 008465 332 NKGSIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI 410 (564)
Q Consensus 332 ~~~~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 410 (564)
....+++.++||.++.-|.. ...++.+.++.+|..||..+ ...|.+.|++...+..|+--+..+++.|+.+-.|.|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788899999999986654 47899999999999998654 4567889999999999988888899999999999997
Q ss_pred ccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcC----ChhhHHHHHhcCChHHHHHHHhcCC----hHHHHH
Q 008465 411 YQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS----HPEGKAAIGAAEAVPVLVEVIGNGS----PRNREN 482 (564)
Q Consensus 411 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~----~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~k~~ 482 (564)
.-..-..-.-..++|.|-++|+..+....+.++-++..++. .++--+.+...|.|.....+|.... ..+...
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 53322211123579999999999888889999888887764 3455578888899999999987543 234556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC
Q 008465 483 AAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG 517 (564)
Q Consensus 483 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~ 517 (564)
.+..|..+|++.+-....+...++...|..++...
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 67888888998898888889999999999998753
No 34
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.08 E-value=1.5e-09 Score=110.27 Aligned_cols=229 Identities=18% Similarity=0.187 Sum_probs=167.7
Q ss_pred CHHHHHHhhCC--CCHHHHHHHHHHHHhcccCCccchhhh-c------cCChHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 008465 300 AIPLLVGLLST--PDSRTQEHAVTALLNLSICEDNKGSIV-S------SGAVPSIVHVLRIGSMEARENAAATLFSLSVI 370 (564)
Q Consensus 300 ~i~~Lv~lL~~--~~~~i~~~A~~~L~nLs~~~~~~~~i~-~------~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~ 370 (564)
.+..++++|+. .+.++....+..+..+..+.+.+..++ . .....+++.++.+++.-+...|+.+|..|...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 45566666653 588899999999999877666554444 2 23678899999999999999999999999877
Q ss_pred cchhhHhhhcCChHHHHHhhcc----CCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhc------cC-CCcchH
Q 008465 371 DENKVTIGASGAIPPLVTLLSE----GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLL------TE-PGGGMV 439 (564)
Q Consensus 371 ~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL------~~-~~~~~~ 439 (564)
...+..-...+.++.++..+.+ .+.+.+..++.+|.+|...++.|..+.+.|+++.+..+| .+ ....++
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 6554444335667888887765 345667899999999999999999999999999999999 22 445788
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCC-hHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHhhhcC
Q 008465 440 DEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS-PRNRENAAAVLVHLCAGDQQ-YLAEAKELGVMGPLVDLAQNG 517 (564)
Q Consensus 440 ~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~k~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~Ll~~~ 517 (564)
..++.+++.|+-+++....+...+.|+.|+++++... .++..-++++|.|++..++. ....++..|+++.|..|....
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk 295 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK 295 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998654 77888899999999987754 788888888888888887654
Q ss_pred --CHHHHHHHHHH
Q 008465 518 --TDRGKRKAAQL 528 (564)
Q Consensus 518 --~~~~k~~A~~l 528 (564)
|++..+--..+
T Consensus 296 ~~Dedl~edl~~L 308 (312)
T PF03224_consen 296 WSDEDLTEDLEFL 308 (312)
T ss_dssp -SSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 67766554443
No 35
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.07 E-value=9.3e-11 Score=106.38 Aligned_cols=60 Identities=30% Similarity=0.646 Sum_probs=51.7
Q ss_pred CCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHh---------------CCCCCCCCCCCCcCCCCCchHH
Q 008465 160 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA---------------GHRTCPKTQQTLTSTAVTPNYV 219 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~---------------~~~~CP~~~~~l~~~~l~~n~~ 219 (564)
...++|.||||++.++|||+++|||.||..||.+|+.. +...||.|+..++...+.|.+.
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 45578999999999999999999999999999999852 2357999999999888877643
No 36
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=2.6e-10 Score=116.20 Aligned_cols=71 Identities=18% Similarity=0.457 Sum_probs=64.2
Q ss_pred CCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHH
Q 008465 159 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEA 230 (564)
Q Consensus 159 ~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~ 230 (564)
..+...|.||||.+++.+||+++|||+||..||..|+.. ...||.|+..+....+.+|..+..+++.|...
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHh
Confidence 356788999999999999999999999999999999984 56899999999888899999999999988653
No 37
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.98 E-value=7.4e-08 Score=111.36 Aligned_cols=230 Identities=19% Similarity=0.164 Sum_probs=142.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccch
Q 008465 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
+...++.|++.|.+.++.++..|+..|..+.. .++++.|+..|+++++.++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence 44567889999999999999999998887642 346788888888888888888888887763211
Q ss_pred hhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc-------------hhh----HhhhcCChHHHHHhhccCCHHH
Q 008465 335 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE-------------NKV----TIGASGAIPPLVTLLSEGTQRG 397 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~-------------~~~----~i~~~g~i~~Lv~lL~~~~~~~ 397 (564)
...+.+...|+++++.+|..|+.+|..+...+. .|. .++..+..+.|..++.+++..+
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V 758 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV 758 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence 112455566666666666666666655431110 000 0000011233334444444444
Q ss_pred HHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCCh
Q 008465 398 KKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSP 477 (564)
Q Consensus 398 ~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 477 (564)
+..++.+|..+... ..+.++.|..++.++++.++..|+..|..+...+ .++..++..|.+.++
T Consensus 759 R~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~ 821 (897)
T PRK13800 759 RIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAW 821 (897)
T ss_pred HHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCCh
Confidence 44444444433221 1123566777777777777777777777664321 123456666777777
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 008465 478 RNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERM 532 (564)
Q Consensus 478 ~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l 532 (564)
.+|..|+.+|..+... ..++.|..++.+.+..+|..|...|..+
T Consensus 822 ~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 822 QVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 7777777777665432 2568888888888889999998888776
No 38
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.97 E-value=1.7e-08 Score=102.52 Aligned_cols=221 Identities=19% Similarity=0.155 Sum_probs=164.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHH------hCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccch
Q 008465 261 ILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAE------AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 261 ~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~------~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
.+++.+ +++.+.....+..+..+...++.....+.. .....++++++..+|..++..|+.+|..+......+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 467888999999999988877766666655 2367889999999999999999999999977655444
Q ss_pred hhhccCChHHHHHHHhcC----CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhh-----ccC--CHHHHHHHHH
Q 008465 335 SIVSSGAVPSIVHVLRIG----SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL-----SEG--TQRGKKDAAT 403 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~----~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-----~~~--~~~~~~~a~~ 403 (564)
.-...+.++.++.+|++. +.+.+..++.+|.+|...+++|..+.+.++++.|..++ .++ +...+..++.
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 433366778888888763 35567899999999999999999999999999999999 222 4678899999
Q ss_pred HHHHhhcccChhHHHHHcCChHHHHHhccC-CCcchHHHHHHHHHHhcCChh--hHHHHHhcCChHHHHHHHhc--CChH
Q 008465 404 ALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILSSHPE--GKAAIGAAEAVPVLVEVIGN--GSPR 478 (564)
Q Consensus 404 aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~~--~~~~i~~~g~i~~Lv~lL~~--~~~~ 478 (564)
+++-|+.+++....+...+.|+.|+++++. ....+..-++++|.||...+. ....++..|+++.+-.+... ++++
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded 300 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED 300 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence 999999999999999999999999999966 667899999999999998776 77888876655554444433 3566
Q ss_pred HHHH
Q 008465 479 NREN 482 (564)
Q Consensus 479 ~k~~ 482 (564)
+.+.
T Consensus 301 l~ed 304 (312)
T PF03224_consen 301 LTED 304 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.95 E-value=8.2e-08 Score=111.00 Aligned_cols=198 Identities=21% Similarity=0.173 Sum_probs=132.7
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhh
Q 008465 299 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIG 378 (564)
Q Consensus 299 g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~ 378 (564)
+.++.|+..|.++++.+|..|+.+|..+. ..++++.|+..|+++++.+|..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------- 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------- 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-------
Confidence 46789999999999999999999998774 3557899999999999999999999998774211
Q ss_pred hcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccC-----------h--hHH----HHHcCChHHHHHhccCCCcchHHH
Q 008465 379 ASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG-----------N--KGK----AVRAGVVPTLMHLLTEPGGGMVDE 441 (564)
Q Consensus 379 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-----------~--~~~----i~~~g~i~~Lv~lL~~~~~~~~~~ 441 (564)
...+.|...|.+.++.++..|+.+|..+..... . |.. +...+..+.|..++.++++.++..
T Consensus 684 --~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~ 761 (897)
T PRK13800 684 --PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIA 761 (897)
T ss_pred --CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHH
Confidence 122456666666677777777766665431110 0 000 001112233444444444455555
Q ss_pred HHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHH
Q 008465 442 ALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRG 521 (564)
Q Consensus 442 al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~ 521 (564)
++..|..+... ....++.|..++++.++.+|..|+..|..+.... .+++.|...+.+.++.+
T Consensus 762 aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~d~~V 823 (897)
T PRK13800 762 VAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRASAWQV 823 (897)
T ss_pred HHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCCChHH
Confidence 55444444332 1123678888888888999999998888875422 13356778888889999
Q ss_pred HHHHHHHHHHHH
Q 008465 522 KRKAAQLLERMS 533 (564)
Q Consensus 522 k~~A~~lL~~l~ 533 (564)
|..|...|..+.
T Consensus 824 R~~Aa~aL~~l~ 835 (897)
T PRK13800 824 RQGAARALAGAA 835 (897)
T ss_pred HHHHHHHHHhcc
Confidence 999999988775
No 40
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=5.3e-07 Score=96.33 Aligned_cols=290 Identities=17% Similarity=0.205 Sum_probs=220.8
Q ss_pred hhhHHHHHHHHHccCC-HHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC--CHHHHHHHHHHHHhcccCCc
Q 008465 255 ERTKIEILLCKLTSGS-PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP--DSRTQEHAVTALLNLSICED 331 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~-~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~i~~~A~~~L~nLs~~~~ 331 (564)
..++|+.|+..+.+.. .+.++.|++.|+.+++ .+|..++ ..++++|+..|+.+ |+++...++.+++++..+++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 4589999999998754 6889999999999986 3555554 44678899999874 89999999999999966442
Q ss_pred ------c-c----------hhhh-ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc--chhhHhhhc-CChHHHHHhh
Q 008465 332 ------N-K----------GSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVID--ENKVTIGAS-GAIPPLVTLL 390 (564)
Q Consensus 332 ------~-~----------~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~--~~~~~i~~~-g~i~~Lv~lL 390 (564)
+ + +.++ ..+.|..++..+...+--+|..++..|.+|-... +.+..+... -+|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 1 2 1222 5789999999999888899999999999987663 455555554 8999999999
Q ss_pred ccCCHHHHHHHHHHHHHhhcccChhHHHHH-cCChHHHHHhccC-C---CcchHHHHHHHHHHhcCCh-hhHHHHHhcCC
Q 008465 391 SEGTQRGKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTE-P---GGGMVDEALAILAILSSHP-EGKAAIGAAEA 464 (564)
Q Consensus 391 ~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~-~g~i~~Lv~lL~~-~---~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~ 464 (564)
.+..+.++..++-.|..|+.......+++. ..++..|..++.. + ..-+++.|+.+|.||-.+. .++..+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 999999999999999999999998888774 6899999999966 2 2347899999999997654 67777778889
Q ss_pred hHHHHHHHhc---CCh------HH----HHHHHHHHHHHhcCC--H----HHHHHHHHcCCHHHHHHhhhcC--CHHHHH
Q 008465 465 VPVLVEVIGN---GSP------RN----RENAAAVLVHLCAGD--Q----QYLAEAKELGVMGPLVDLAQNG--TDRGKR 523 (564)
Q Consensus 465 i~~Lv~lL~~---~~~------~~----k~~A~~~L~~L~~~~--~----~~~~~~~~~g~i~~L~~Ll~~~--~~~~k~ 523 (564)
||.|..+|.. ++. .- -..|..++..+..-+ + .+...+.+.+++..|..++.++ ...+..
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988853 221 11 223444555444321 1 2335667789999999998876 455677
Q ss_pred HHHHHHHHHHhhHHHHHHHhhchhh
Q 008465 524 KAAQLLERMSRFIEQQKQAQVQTES 548 (564)
Q Consensus 524 ~A~~lL~~l~~~~~~~~~~~~~~~~ 548 (564)
.+.-.+....+.....+...++...
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~ 360 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTA 360 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccC
Confidence 7777888888888887777776433
No 41
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.90 E-value=2.5e-07 Score=92.82 Aligned_cols=270 Identities=14% Similarity=0.094 Sum_probs=202.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhH---HHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCCccch
Q 008465 259 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNR---VAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 259 i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r---~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
....+..|..+++-....+.+.|..++......- ..-.. ...|-..+++ .+.+....|+++|-.+...++.|-
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence 4678888888898888888899988876332211 11111 1233344554 567788889999999999999999
Q ss_pred hhhccCChHHHHHHHhcC--CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcc
Q 008465 335 SIVSSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIY 411 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~ 411 (564)
.++.++++..++..|.++ +..++...+.+++-|+.++...+.+...+.|+.|.+++++. .+++.+-.+.++.|+...
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999433 78999999999999999998888887779999999999876 578889999999999987
Q ss_pred cCh-------hHHHHHcCChHHHHHhccC---CCcchHHHHHHHHH-------HhcCChh--------------------
Q 008465 412 QGN-------KGKAVRAGVVPTLMHLLTE---PGGGMVDEALAILA-------ILSSHPE-------------------- 454 (564)
Q Consensus 412 ~~~-------~~~i~~~g~i~~Lv~lL~~---~~~~~~~~al~~L~-------~L~~~~~-------------------- 454 (564)
.+. ...++..++.+. ++.|.. .++++....-.+-. .|+..++
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~-l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKT-LQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHH-HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence 742 234555555444 455533 45555443322222 3344332
Q ss_pred ----hHHHHHhc--CChHHHHHHHhcCC-hHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHH
Q 008465 455 ----GKAAIGAA--EAVPVLVEVIGNGS-PRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQ 527 (564)
Q Consensus 455 ----~~~~i~~~--g~i~~Lv~lL~~~~-~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~ 527 (564)
+...+-+. ..+..|+.+|+..+ |..---|+.=+....+..|+....+.+.|+-+.+++|+++.++++|..|..
T Consensus 352 FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALl 431 (442)
T KOG2759|consen 352 FWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALL 431 (442)
T ss_pred hHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHH
Confidence 22333333 36889999998755 777777888889999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 008465 528 LLERM 532 (564)
Q Consensus 528 lL~~l 532 (564)
++.-|
T Consensus 432 avQ~l 436 (442)
T KOG2759|consen 432 AVQKL 436 (442)
T ss_pred HHHHH
Confidence 88655
No 42
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.85 E-value=1.5e-09 Score=73.49 Aligned_cols=38 Identities=42% Similarity=1.021 Sum_probs=33.0
Q ss_pred CcccccCCCCCE-EcCCCCcccHHHHHHHHHhCCCCCCCC
Q 008465 167 CPISLELMKDPV-IVSTGQTYERSCIEKWLEAGHRTCPKT 205 (564)
Q Consensus 167 Cpic~~lm~dPv-~~~cg~t~~r~ci~~~~~~~~~~CP~~ 205 (564)
||||.+.+.+|+ .++|||+||+.||.+|+.. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 899999999994 6899999999999999997 7889986
No 43
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.80 E-value=2e-09 Score=103.39 Aligned_cols=69 Identities=28% Similarity=0.492 Sum_probs=62.8
Q ss_pred CCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHH
Q 008465 161 IPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEA 230 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~ 230 (564)
+..-++|-||.++|.-|++++||||||.-||..++. .+..||.|..+++...+..|..+..+++.+...
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 455689999999999999999999999999999998 688999999999999999999999998887553
No 44
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=7.5e-07 Score=88.34 Aligned_cols=183 Identities=19% Similarity=0.184 Sum_probs=152.3
Q ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCC-ccchhhhccCChHHHH
Q 008465 268 SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE-DNKGSIVSSGAVPSIV 346 (564)
Q Consensus 268 s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~-~~~~~i~~~g~i~~Lv 346 (564)
+.+.+.+..|+..|..++ ++.+|-..+...|+..+++.++++.+..+|+.|+++|+..+.+. ..+..+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 467889999999999999 48899999999999999999999999999999999999998754 5688999999999999
Q ss_pred HHHhcC-CHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhcc--CCHHHHHHHHHHHHHhhcccChhHHHH-Hc
Q 008465 347 HVLRIG-SMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSE--GTQRGKKDAATALFNLCIYQGNKGKAV-RA 421 (564)
Q Consensus 347 ~lL~~~-~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~nL~~~~~~~~~i~-~~ 421 (564)
..|.+. +..++..|..++.+|-.+. .....+...++...|...+.+ .+...+..++..+.+|.........++ ..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999876 5678899999999998875 466677777889999999998 467888999999999887655544444 45
Q ss_pred CChHHHHHhccCCCcchHHHHHHHHHHhcC
Q 008465 422 GVVPTLMHLLTEPGGGMVDEALAILAILSS 451 (564)
Q Consensus 422 g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~ 451 (564)
|+...+..+....+.++.+.++.++..+..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 666666667676777888888777765543
No 45
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.72 E-value=4.1e-07 Score=91.83 Aligned_cols=264 Identities=15% Similarity=0.154 Sum_probs=191.5
Q ss_pred hhhHHHHHHHHHccCCHHH--HHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCCc
Q 008465 255 ERTKIEILLCKLTSGSPED--QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICED 331 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~--~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~ 331 (564)
..+....|++++.+++.+. +.+|.+.|..+. ..+|+..++..| ...++.+-+. +.++.+...+.+|.++-++.+
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 4578899999999988765 788888888876 477888988887 4444444443 467888999999999988665
Q ss_pred -cchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc--chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 008465 332 -NKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID--ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 408 (564)
Q Consensus 332 -~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 408 (564)
....++..|+++.++-..+..++.+...++-+|.|.+... ..+..|++..+-+.|..+..+.++-.+..||-+.+-|
T Consensus 255 et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 255 ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence 4778889999999999999999999999999999988663 6788899999999999999888888999999999999
Q ss_pred hcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHH
Q 008465 409 CIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLV 488 (564)
Q Consensus 409 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~ 488 (564)
+.+.+....+...|.+..+-.++.+-++.--.. .-.....++ ...-+..|+.+|++...+.+--++ .
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR------D~hd~aQG~----~~d~LqRLvPlLdS~R~EAq~i~A---F 401 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR------DAHDYAQGR----GPDDLQRLVPLLDSNRLEAQCIGA---F 401 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh------hhhhhhccC----ChHHHHHhhhhhhcchhhhhhhHH---H
Confidence 998887777777775555444444434421110 001111111 113578888889854333332222 2
Q ss_pred HHhcC----CHHH-HHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 489 HLCAG----DQQY-LAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 489 ~L~~~----~~~~-~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
.+|.. .... .+.+-+-|+|+.|.++..+.+.-.-+-|..+|..+.+
T Consensus 402 ~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 402 YLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 23321 1122 2444567999999999998888778888889988864
No 46
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.72 E-value=6.8e-09 Score=71.05 Aligned_cols=36 Identities=28% Similarity=0.812 Sum_probs=23.2
Q ss_pred CcccccCCCC----CEEcCCCCcccHHHHHHHHHhC---CCCCC
Q 008465 167 CPISLELMKD----PVIVSTGQTYERSCIEKWLEAG---HRTCP 203 (564)
Q Consensus 167 Cpic~~lm~d----Pv~~~cg~t~~r~ci~~~~~~~---~~~CP 203 (564)
||||.+ |.+ |+.++|||+||+.|+++++..+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999854 45676
No 47
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.8e-06 Score=85.63 Aligned_cols=182 Identities=19% Similarity=0.188 Sum_probs=154.6
Q ss_pred CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh-hHHHHHcCChHHHHHhc
Q 008465 353 SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN-KGKAVRAGVVPTLMHLL 431 (564)
Q Consensus 353 ~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~~~i~~~g~i~~Lv~lL 431 (564)
+.+-++.|..-|..+..+-+|...+...|++.+++..+.+.+..+|+.|+++|+..+.+.+- ...+++.|+.+.|+.+|
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 67778888888888888878888899999999999999999999999999999998887554 45677999999999999
Q ss_pred cC-CCcchHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 008465 432 TE-PGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGN--GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVM 507 (564)
Q Consensus 432 ~~-~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~--~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i 507 (564)
.. .+..++..|+.++..|-.+ +.+...+...++...|...|.+ .+...+..|+..+..|..........+...|+.
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 76 4456779999999988765 5788889888899999999998 568889999999999998887777777888899
Q ss_pred HHHHHhhhcCCHHHHHHHHHHH-HHHHh
Q 008465 508 GPLVDLAQNGTDRGKRKAAQLL-ERMSR 534 (564)
Q Consensus 508 ~~L~~Ll~~~~~~~k~~A~~lL-~~l~~ 534 (564)
..+..+....+..+++.|...+ ..+..
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 9999999888888888877644 33333
No 48
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.67 E-value=1.1e-05 Score=84.02 Aligned_cols=286 Identities=14% Similarity=0.096 Sum_probs=193.6
Q ss_pred hhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHh-----CCHHHHHHhhCCCCHHHHHHHHHHHHhcccC
Q 008465 256 RTKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEA-----GAIPLLVGLLSTPDSRTQEHAVTALLNLSIC 329 (564)
Q Consensus 256 ~~~i~~Lv~~L~s-~~~~~~~~al~~L~~L~~~~~~~r~~i~~~-----g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~ 329 (564)
...+..++..++. ++.+.....+.-+..+...++.....+.+. ....+++.+|..+|.-++..|+.+|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 3567778888875 566777777888888877666655556554 4667888899999999999999999998643
Q ss_pred Cccc-hhhhccCChHHHHHHHhcC-CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccC--CHHHHHHHHHHH
Q 008465 330 EDNK-GSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG--TQRGKKDAATAL 405 (564)
Q Consensus 330 ~~~~-~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL 405 (564)
.... ......-.+..+...|+++ +...+..++.+|..|...+++|..+.+.++++.|+.+|+.. +...+..++-++
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 2211 1110111233445555554 46778889999999999999999999889999999999764 457889999999
Q ss_pred HHhhcccChhHHHHHcCChHHHHHhccC-CCcchHHHHHHHHHHhcCCh-------hhHHHHHhcCChHHHHHHHhc---
Q 008465 406 FNLCIYQGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILSSHP-------EGKAAIGAAEAVPVLVEVIGN--- 474 (564)
Q Consensus 406 ~nL~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~-------~~~~~i~~~g~i~~Lv~lL~~--- 474 (564)
+-|+.+++....+...+.|+.|+++++. ....+..-++.+|.||...+ .....++..|+ +.++..|..
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLEQRKY 290 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHhcCCC
Confidence 9999998877777788999999999976 66778999999999998743 23345565554 555565543
Q ss_pred CChHHHHHHHHH---H----HHHhc--------------CCH---------HHHHHHHHcC--CHHHHHHhhh-cCCHHH
Q 008465 475 GSPRNRENAAAV---L----VHLCA--------------GDQ---------QYLAEAKELG--VMGPLVDLAQ-NGTDRG 521 (564)
Q Consensus 475 ~~~~~k~~A~~~---L----~~L~~--------------~~~---------~~~~~~~~~g--~i~~L~~Ll~-~~~~~~ 521 (564)
.++++.+.--.+ | -.+++ -+| ++...+.+.+ ++..|..++. +.++.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 344443322111 1 11110 111 3334444433 4788888885 445666
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 008465 522 KRKAAQLLERMSRFIEQQKQA 542 (564)
Q Consensus 522 k~~A~~lL~~l~~~~~~~~~~ 542 (564)
---|+.=|..+.+..+..+.-
T Consensus 371 laVAc~Dige~vr~~P~gr~i 391 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDV 391 (429)
T ss_pred eehhhhhHHHHHHHCccHHHH
Confidence 666666666666555443333
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.67 E-value=6e-09 Score=76.04 Aligned_cols=59 Identities=25% Similarity=0.539 Sum_probs=33.7
Q ss_pred CCccCcccccCCCCCEEc-CCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHH
Q 008465 163 DDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLI 224 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i 224 (564)
.-++|++|.++|+.||.+ .|.|.||..||...+. ..||+|+.+....++..|+.+.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence 457999999999999975 8999999999987553 3499999999999999999998876
No 50
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.66 E-value=9.2e-07 Score=96.87 Aligned_cols=218 Identities=21% Similarity=0.218 Sum_probs=111.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhh
Q 008465 258 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV 337 (564)
Q Consensus 258 ~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~ 337 (564)
.+..+.+.|.++++..+..|++.|.++. +++.... +++.+.+++.++++.+|..|+.++..+....+ +.+.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p--~~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDP--DLVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH--CCHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCH--HHHH
Confidence 4555666666777777777777777765 2332222 35666677777777777777777776654321 1111
Q ss_pred ccCChHHHHHHHhcCCHHHHHHHHHHHHhc-cCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhH
Q 008465 338 SSGAVPSIVHVLRIGSMEARENAAATLFSL-SVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG 416 (564)
Q Consensus 338 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~L-s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 416 (564)
.. .++.+..+|.+.++.++..|+.++..+ ...+.+. -.-...+..|..++...++-.+..++..|..++.......
T Consensus 151 ~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 151 DE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp GG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred HH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh
Confidence 22 466677777666777777777777666 1111111 0011223333333344555555555555555544322221
Q ss_pred HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 008465 417 KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 417 ~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~ 494 (564)
.- ..+++.+..++.+.++.+.-.|+.++..+...+. .-..+++.|..+|.+.++.++-.++..|..++...
T Consensus 228 ~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 228 DK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred hH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 00 2344445555544445555555555555544443 11124455555555555555555555555555443
No 51
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.66 E-value=1.8e-08 Score=69.23 Aligned_cols=39 Identities=46% Similarity=1.109 Sum_probs=36.1
Q ss_pred CcccccCCCCCE-EcCCCCcccHHHHHHHHH-hCCCCCCCC
Q 008465 167 CPISLELMKDPV-IVSTGQTYERSCIEKWLE-AGHRTCPKT 205 (564)
Q Consensus 167 Cpic~~lm~dPv-~~~cg~t~~r~ci~~~~~-~~~~~CP~~ 205 (564)
||||.+.+.+|+ +++|||+||+.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 789999999999999999 667789986
No 52
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.62 E-value=1.9e-06 Score=94.28 Aligned_cols=255 Identities=17% Similarity=0.190 Sum_probs=183.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhc-ccCCccchh
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNL-SICEDNKGS 335 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nL-s~~~~~~~~ 335 (564)
..++.+.+.+.++++.+|.+|+.++..+.+.+++. +... .++.+..+|.+.++.++..|+.++..+ ..+.... .
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~ 188 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-S 188 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-T
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-h
Confidence 45677788888999999999999999998876653 2222 689999999999999999999999999 1111111 1
Q ss_pred hhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChh
Q 008465 336 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK 415 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 415 (564)
.-...+..+..++...++-.+...+.+|..++........- ...++.+..++.+.++.+...++.++.++.....
T Consensus 189 -~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 189 -LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp -HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred -hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence 11233444555556778889999999999988665432211 4568888888888888999999999998876554
Q ss_pred HHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHh-cCChHHHHHHHHHHHHHhcCC
Q 008465 416 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 416 ~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~k~~A~~~L~~L~~~~ 494 (564)
.-..+++.|..+|.+++++++..++..|..++... ... +. .....+..+. +.++.+|..++.+|..++.
T Consensus 264 ---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~-v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~-- 333 (526)
T PF01602_consen 264 ---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPA-VF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN-- 333 (526)
T ss_dssp ---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHH-HG--THHHHHHHHHCSSSHHHHHHHHHHHHHH----
T ss_pred ---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chh-hh--hhhhhhheecCCCChhHHHHHHHHHhhccc--
Confidence 44477889999999888889999999999998765 222 22 2333344555 6778899999999999985
Q ss_pred HHHHHHHHHcCCHHHHHHhhhc-CCHHHHHHHHHHHHHHHhhH
Q 008465 495 QQYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 495 ~~~~~~~~~~g~i~~L~~Ll~~-~~~~~k~~A~~lL~~l~~~~ 536 (564)
+.+... +++.|...+.+ ++...++.+...+..+....
T Consensus 334 ~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 334 ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 344443 46677777744 47778888888888777655
No 53
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.60 E-value=3.4e-07 Score=77.65 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=121.9
Q ss_pred cCChHHHHHHHhc-CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHH
Q 008465 339 SGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 417 (564)
Q Consensus 339 ~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 417 (564)
-+.+..++.-... .+.+.++...+-|.|++.++.|-..+.+.++++.+++-|...++..++.++..|+|+|.++.|...
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3455566655544 489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCCh-hhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHH
Q 008465 418 AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 489 (564)
Q Consensus 418 i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~ 489 (564)
|++++++|.++..++++...++..|+.+|..|+... ..+..+....++..+.++-.+.+.+.+.-|-..|-.
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDK 167 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999999988889999999999998765 456666665555555555444444444444444433
No 54
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.6e-08 Score=92.10 Aligned_cols=58 Identities=31% Similarity=0.697 Sum_probs=51.2
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHh--CCCCCCCCCCCCcCCCCCchHH
Q 008465 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA--GHRTCPKTQQTLTSTAVTPNYV 219 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~--~~~~CP~~~~~l~~~~l~~n~~ 219 (564)
-..|-|-||++.-+|||++.|||-||=.||.+|+.- +...||+|...++...++|-+-
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 357999999999999999999999999999999973 4467899999999988888543
No 55
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.57 E-value=4.7e-08 Score=93.07 Aligned_cols=48 Identities=23% Similarity=0.592 Sum_probs=41.0
Q ss_pred CCCccCcccccCCCCC--------EEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 162 PDDFRCPISLELMKDP--------VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 162 p~~f~Cpic~~lm~dP--------v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.++..||||++.+.+| +..+|||+||+.||.+|+. ...+||.||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEee
Confidence 4578999999987653 4568999999999999998 5789999999876
No 56
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.57 E-value=4.4e-08 Score=70.36 Aligned_cols=47 Identities=30% Similarity=0.691 Sum_probs=41.1
Q ss_pred CCccCcccccCCCCCEEcCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 163 DDFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
+++.|+||++...+++..+|||. ||..|+.+|+. ....||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 36789999999999999999999 99999999998 6788999999875
No 57
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.56 E-value=3.7e-08 Score=92.88 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=58.6
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHH
Q 008465 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCE 229 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~ 229 (564)
..-++|-||.+.++-|+.++||||||.-||..++. .+..||.|+.+.....+..+..++..++.+..
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 34589999999999999999999999999999998 57889999999888888888888887777644
No 58
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=5.8e-08 Score=92.45 Aligned_cols=56 Identities=21% Similarity=0.535 Sum_probs=48.7
Q ss_pred CCCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 008465 158 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAV 214 (564)
Q Consensus 158 ~~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l 214 (564)
+...+..+.|.+|++-+++|-.++|||.||-+||..|..+ ...||.||.++++..+
T Consensus 233 ~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred ccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 3455667999999999999999999999999999999985 5569999999886654
No 59
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=5.6e-08 Score=85.82 Aligned_cols=54 Identities=24% Similarity=0.599 Sum_probs=44.8
Q ss_pred CCCccCcccccCCC--CCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCc
Q 008465 162 PDDFRCPISLELMK--DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTP 216 (564)
Q Consensus 162 p~~f~Cpic~~lm~--dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 216 (564)
..-|.||||++-+. -||.+.|||.||+.||...++. ...||.|++.+++..+.+
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence 34599999999886 4666899999999999999984 567999999988766544
No 60
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.51 E-value=1.4e-05 Score=84.59 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=103.7
Q ss_pred cCChHHHHHhccCCCcchHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHH
Q 008465 421 AGVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLA 499 (564)
Q Consensus 421 ~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~ 499 (564)
..++.+|++++.+++..+...++++|.|+.. ...-+..+++.|+|..+..++.+.++.++..++++|.++..+.....+
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 4578899999999999999999999999974 567889999999999999999999999999999999999988876555
Q ss_pred HHHHcC-CHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHH
Q 008465 500 EAKELG-VMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQA 542 (564)
Q Consensus 500 ~~~~~g-~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~ 542 (564)
...... ....+..+..+++..+++.+-.+|+||....+..-..
T Consensus 498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdf 541 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDF 541 (678)
T ss_pred HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 444443 4567788889999999999999999999775544333
No 61
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.48 E-value=5.2e-08 Score=71.32 Aligned_cols=44 Identities=32% Similarity=0.780 Sum_probs=31.6
Q ss_pred CCccCcccccCCCCCEE-cCCCCcccHHHHHHHHH-hCCCCCCCCC
Q 008465 163 DDFRCPISLELMKDPVI-VSTGQTYERSCIEKWLE-AGHRTCPKTQ 206 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~-~~cg~t~~r~ci~~~~~-~~~~~CP~~~ 206 (564)
-.+.|||++..|.+||. ..|||+|++.+|.+|+. .+...||..+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 35999999999999998 58999999999999994 3456899854
No 62
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=2.8e-05 Score=75.33 Aligned_cols=270 Identities=18% Similarity=0.180 Sum_probs=184.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHH-HhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhh
Q 008465 259 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIA-EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV 337 (564)
Q Consensus 259 i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~ 337 (564)
...+++++++.++.++..|+..+..++.. ..+.+.. +.-.++.+..++...++ -+.|+++|.|++.+..-++.++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 56789999999999999999999888764 3333332 23468889999988766 5779999999999988888887
Q ss_pred ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhh-------cCChHHHHHhhccC-CH-HHHHHHHHHHHHh
Q 008465 338 SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGA-------SGAIPPLVTLLSEG-TQ-RGKKDAATALFNL 408 (564)
Q Consensus 338 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~-------~g~i~~Lv~lL~~~-~~-~~~~~a~~aL~nL 408 (564)
.. .+..++..+-+.....-...+.+|.||+..+.....+.. .|.+.........+ +. .-....+..+.||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 66 788888888777666777888999999988764433321 23333333444333 21 2234567788899
Q ss_pred hcccChhHHHHHcCChH--HHHHhccCCCcchH-HHHHHHHHHhcCChhhHHHHHhcC--ChHHH---------------
Q 008465 409 CIYQGNKGKAVRAGVVP--TLMHLLTEPGGGMV-DEALAILAILSSHPEGKAAIGAAE--AVPVL--------------- 468 (564)
Q Consensus 409 ~~~~~~~~~i~~~g~i~--~Lv~lL~~~~~~~~-~~al~~L~~L~~~~~~~~~i~~~g--~i~~L--------------- 468 (564)
+....+|..+.....++ .++.+ .+.+..++ .-.+++|.|.|-.......+.+.+ .+|.+
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 99999988777655332 23333 33333333 345788888887665555554421 22222
Q ss_pred ------HHHHh-----cCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC-CHHHHHHHHHHHHHHHhh
Q 008465 469 ------VEVIG-----NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 469 ------v~lL~-----~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~~ 535 (564)
+++|. ..++.++..-+.+|..||. ....++.+.+.|+-+.|-++=... ++.+++..-.+...+.+.
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 23442 2457888999999999998 447888888888888877776554 677777777777777763
No 63
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.48 E-value=8.9e-07 Score=75.18 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=128.9
Q ss_pred hcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHH
Q 008465 379 ASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKA 457 (564)
Q Consensus 379 ~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~ 457 (564)
..+.+..|++-..+. +.+.++....-|+|.+.++-|-..+.+..++...+..|..++..+++.+++.|.|+|-.+.+..
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 345667777766554 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHH
Q 008465 458 AIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLE 530 (564)
Q Consensus 458 ~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~ 530 (564)
.|.+.+++|.++..+.++...+...|+..|..||.++...+..+....++..+.+...+.+.+.+.-|...|.
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~ 166 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLD 166 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999888888999999999999988888888888777777777665555555555544443
No 64
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.43 E-value=6.5e-08 Score=67.46 Aligned_cols=40 Identities=38% Similarity=0.926 Sum_probs=33.3
Q ss_pred cCcccccCCC---CCEEcCCCCcccHHHHHHHHHhCCCCCCCCC
Q 008465 166 RCPISLELMK---DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQ 206 (564)
Q Consensus 166 ~Cpic~~lm~---dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~ 206 (564)
.||||++.+. .++.++|||.|+..||.+|++. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999883 4556799999999999999986 57999985
No 65
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=9.7e-06 Score=90.78 Aligned_cols=235 Identities=18% Similarity=0.195 Sum_probs=159.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCcc-chhh
Q 008465 258 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN-KGSI 336 (564)
Q Consensus 258 ~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~-~~~i 336 (564)
..+.+-.+|.|.+|..+..|+.+|..++.+..+.-.... ..+++..++.|+++++.+|..|+.+++.++.+-.. -..-
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 345556677899999999999999999987766544422 25788889999999999999999999999986432 3333
Q ss_pred hccCChHHHHHHHhcC-CHHHHHHHHHHHHhccCCcchhhHhhh-cCChH-HHHHhhccCCHHHHHHHHHHHHHhhcccC
Q 008465 337 VSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGA-SGAIP-PLVTLLSEGTQRGKKDAATALFNLCIYQG 413 (564)
Q Consensus 337 ~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~-~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 413 (564)
...-.++.|+..+.+. +++++.+|+.+|.|++.........-. .+.+. .|..++.++.+.+++.++++|+..+...+
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 4566678899999876 789999999999999865432221111 14444 33334567789999999999999987766
Q ss_pred hhHHHHHcCChHHHHHhccCCC-cchHHHHHHHHHHhc--CChhhHHHHHhc--CChHHHHHHH---hcCChHHHHHHHH
Q 008465 414 NKGKAVRAGVVPTLMHLLTEPG-GGMVDEALAILAILS--SHPEGKAAIGAA--EAVPVLVEVI---GNGSPRNRENAAA 485 (564)
Q Consensus 414 ~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~al~~L~~L~--~~~~~~~~i~~~--g~i~~Lv~lL---~~~~~~~k~~A~~ 485 (564)
.+-.-.-.-.+|.|..+|.+.+ .+.+.....++..++ ...-|++.+... .++..+..+- ...+...+.+-..
T Consensus 508 ~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~ 587 (1075)
T KOG2171|consen 508 EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIA 587 (1075)
T ss_pred hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHH
Confidence 5544344567888999987744 444443333333332 233455555432 2444444442 2234556777777
Q ss_pred HHHHHhcC
Q 008465 486 VLVHLCAG 493 (564)
Q Consensus 486 ~L~~L~~~ 493 (564)
...++|..
T Consensus 588 ~warmc~i 595 (1075)
T KOG2171|consen 588 FWARMCRI 595 (1075)
T ss_pred HHHHHHHH
Confidence 77788864
No 66
>PTZ00429 beta-adaptin; Provisional
Probab=98.43 E-value=5.4e-05 Score=84.61 Aligned_cols=260 Identities=15% Similarity=0.074 Sum_probs=182.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhh
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 336 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i 336 (564)
......++.+.+.+.+.++-.--.|.++++.+++... -+|..|.+=+.++++.+|-.|+++|.++-...
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~------ 136 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS------ 136 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH------
Confidence 3456667778888888888877778778765655321 24577888888899999999999998874311
Q ss_pred hccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhH
Q 008465 337 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG 416 (564)
Q Consensus 337 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 416 (564)
+-.-.++.+.+.|.+.++-+|..|+-++.++...++ ..+...+.++.|.++|.+.++.+..+|+.+|..+........
T Consensus 137 i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 137 VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 112345667778888899999999999999865433 334456889999999999999999999999999987654433
Q ss_pred HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC-H
Q 008465 417 KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD-Q 495 (564)
Q Consensus 417 ~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~-~ 495 (564)
. ...+.+..|+..|...++..+...+.+|.... |...... ...+..+...|++.++.+.-.|+.++.++.... +
T Consensus 215 ~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 215 E-SSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred H-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence 2 33466777888887667777777777775532 2221111 246777888888889999999999999887542 2
Q ss_pred HHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008465 496 QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 496 ~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
.....+. ..+..+|+.|+ +++++++--+..-|..+....
T Consensus 290 ~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~ 328 (746)
T PTZ00429 290 ELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLVIF 328 (746)
T ss_pred HHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC
Confidence 3222221 12346667764 566788888887776665443
No 67
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00013 Score=78.58 Aligned_cols=287 Identities=18% Similarity=0.181 Sum_probs=203.9
Q ss_pred hHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhhCh------hhH------H-----HHHHhCCHHHHHHhhCCCCHHHHH
Q 008465 257 TKIEILLCKLTS--GSPEDQRSAAGEIRLLAKRNA------DNR------V-----AIAEAGAIPLLVGLLSTPDSRTQE 317 (564)
Q Consensus 257 ~~i~~Lv~~L~s--~~~~~~~~al~~L~~L~~~~~------~~r------~-----~i~~~g~i~~Lv~lL~~~~~~i~~ 317 (564)
.+++.|++.|+. .|++....++..+..+..+.+ ..+ . .|...+.|..|+.++...|-.+|.
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~ 140 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL 140 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence 567889999886 578899999999988875442 111 1 233458999999999999999999
Q ss_pred HHHHHHHhcccCC--ccchhhh-ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhh-cCChHHHHHhhccC
Q 008465 318 HAVTALLNLSICE--DNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGA-SGAIPPLVTLLSEG 393 (564)
Q Consensus 318 ~A~~~L~nLs~~~--~~~~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~ 393 (564)
.|+..|.++.... +.+..++ ..-+|..++.+|.....-+|..++..|..|..+.....+++. .+++..|++++..+
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999985433 3455555 688999999999988888899999999999988776666655 59999999999764
Q ss_pred ---C-HHHHHHHHHHHHHhhcccC-hhHHHHHcCChHHHHHhccC---CCcc----------hHHHHHHHHHHhcCCh--
Q 008465 394 ---T-QRGKKDAATALFNLCIYQG-NKGKAVRAGVVPTLMHLLTE---PGGG----------MVDEALAILAILSSHP-- 453 (564)
Q Consensus 394 ---~-~~~~~~a~~aL~nL~~~~~-~~~~i~~~g~i~~Lv~lL~~---~~~~----------~~~~al~~L~~L~~~~-- 453 (564)
+ .-+..+++..|.||..++. |...+.+.+.||.|..+|.. .+.+ -...++.++..|....
T Consensus 221 Gg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt 300 (970)
T KOG0946|consen 221 GGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNT 300 (970)
T ss_pred CCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2 2467899999999987654 55567788999999988754 2321 1345666666665321
Q ss_pred -----hhHHHHHhcCChHHHHHHHhcC--ChHHHHHHHHHHHHHhcCCHHHHHHHHHcCC----------HHHHHHhhhc
Q 008465 454 -----EGKAAIGAAEAVPVLVEVIGNG--SPRNRENAAAVLVHLCAGDQQYLAEAKELGV----------MGPLVDLAQN 516 (564)
Q Consensus 454 -----~~~~~i~~~g~i~~Lv~lL~~~--~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~----------i~~L~~Ll~~ 516 (564)
.++..+...+++..|..++.+. ..+++..+.-++.++.+++..+...+.+..+ +-.|+.+..+
T Consensus 301 ~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne 380 (970)
T KOG0946|consen 301 SSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNE 380 (970)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhc
Confidence 2334667778899998888765 3578888889999999988877777764321 2233344444
Q ss_pred C-CHHHHHHHHHHHHH-HHhhHHHHHHHh
Q 008465 517 G-TDRGKRKAAQLLER-MSRFIEQQKQAQ 543 (564)
Q Consensus 517 ~-~~~~k~~A~~lL~~-l~~~~~~~~~~~ 543 (564)
. ....|-....+++. +.+..+.+++.+
T Consensus 381 ~q~~~lRcAv~ycf~s~l~dN~~gq~~~l 409 (970)
T KOG0946|consen 381 KQPFSLRCAVLYCFRSYLYDNDDGQRKFL 409 (970)
T ss_pred cCCchHHHHHHHHHHHHHhcchhhHHHHH
Confidence 3 44444444445544 444555555443
No 68
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.42 E-value=2.8e-07 Score=64.34 Aligned_cols=43 Identities=44% Similarity=1.049 Sum_probs=38.3
Q ss_pred cCcccccCCCCCEEcC-CCCcccHHHHHHHHHhCCCCCCCCCCC
Q 008465 166 RCPISLELMKDPVIVS-TGQTYERSCIEKWLEAGHRTCPKTQQT 208 (564)
Q Consensus 166 ~Cpic~~lm~dPv~~~-cg~t~~r~ci~~~~~~~~~~CP~~~~~ 208 (564)
.|+||.+.+.+|+.+. |||.||..|+..|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888775 999999999999999778889999875
No 69
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=7.4e-06 Score=88.46 Aligned_cols=217 Identities=17% Similarity=0.180 Sum_probs=170.4
Q ss_pred hhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCCccc
Q 008465 256 RTKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNK 333 (564)
Q Consensus 256 ~~~i~~Lv~~L~s-~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~~~ 333 (564)
...++.|+..|+. .+.+++..|+++|.+++.--|.....+++.++||.|+.-|.. +-.++-++++.+|-.++... -
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~ 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--P 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--c
Confidence 4688999999986 689999999999999998889999999999999999986654 56788899999999998633 3
Q ss_pred hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcc--
Q 008465 334 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY-- 411 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-- 411 (564)
..|.++|++-..+.+|.--+.-+++.|+++..|.|..-..-..-.-..++|.|..+|...+.+..+.++.++..++..
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 678899999999999987788899999999999886521111111225789999999999999999999999988754
Q ss_pred --cChhHHHHHcCChHHHHHhccCCC----cchHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHHhc
Q 008465 412 --QGNKGKAVRAGVVPTLMHLLTEPG----GGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGN 474 (564)
Q Consensus 412 --~~~~~~i~~~g~i~~Lv~lL~~~~----~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~ 474 (564)
++--.++...|.|....++|.-.. ..+....+..|..+|.+ +.....+...++...|..+|..
T Consensus 368 h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 368 HGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred cChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 223346778999999999986532 23445556666777665 6777777777777777777753
No 70
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.1e-06 Score=79.05 Aligned_cols=75 Identities=36% Similarity=0.528 Sum_probs=69.8
Q ss_pred CCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHHcCC
Q 008465 159 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGI 233 (564)
Q Consensus 159 ~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 233 (564)
..+|+.++|.|+.++|++||+.|+|-||.|.-|..++..-...-|+++.+++...+.||..++..|..|...|++
T Consensus 206 rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 206 REVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred ccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence 368999999999999999999999999999999999987555699999999999999999999999999999876
No 71
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.37 E-value=1.2e-05 Score=84.89 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHHHhccCC-cchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcc-cChhHHHHHcCChHHHHH
Q 008465 352 GSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY-QGNKGKAVRAGVVPTLMH 429 (564)
Q Consensus 352 ~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~g~i~~Lv~ 429 (564)
.+...+..|+-++.+++.. +.-+.......++.+|++++..++..++..++++|+||... .+-+..++..|+|..+..
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 3455566666666666543 22333344558999999999999999999999999999876 455788999999999999
Q ss_pred hccCCCcchHHHHHHHHHHhcCChhhHH--HHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008465 430 LLTEPGGGMVDEALAILAILSSHPEGKA--AIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKE 503 (564)
Q Consensus 430 lL~~~~~~~~~~al~~L~~L~~~~~~~~--~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~ 503 (564)
++.+++..++..++++|.++.-+.+... +....=....++.+..++++.++|.+..+|.|+..+..+.+..+++
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 9999999999999999999987765443 2232224567777888899999999999999999887666666554
No 72
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=8.5e-05 Score=83.46 Aligned_cols=277 Identities=18% Similarity=0.224 Sum_probs=164.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHh-CCHHHHHHhh----CCCCHHHHHHHHHHHHhcccCCcc-
Q 008465 259 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLL----STPDSRTQEHAVTALLNLSICEDN- 332 (564)
Q Consensus 259 i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL----~~~~~~i~~~A~~~L~nLs~~~~~- 332 (564)
...+.+-+..++..++..|++++...+...+.++...... ..+|.++..+ ..++.+.-..++.+|..++....-
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 3344444555444589999999988887665444433332 4566666555 345655555666666666543211
Q ss_pred -chhhhccCChHHHHHHHhcC--CHHHHHHHHHHHHhccCCcch--hh--------------------------------
Q 008465 333 -KGSIVSSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDEN--KV-------------------------------- 375 (564)
Q Consensus 333 -~~~i~~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~--~~-------------------------------- 375 (564)
+..+ ..++...+.+.++. +..+|..|+..|..++..-.. |.
T Consensus 241 l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d 318 (1075)
T KOG2171|consen 241 LRPHL--SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD 318 (1075)
T ss_pred HHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence 1111 11222333333332 234444444444443322100 00
Q ss_pred --------------------HhhhcCChHHH----HHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhc
Q 008465 376 --------------------TIGASGAIPPL----VTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLL 431 (564)
Q Consensus 376 --------------------~i~~~g~i~~L----v~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL 431 (564)
.++-..++|++ -.++.+.+-.-+..++.+|..++.+......-.=..+++.+++.|
T Consensus 319 ed~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l 398 (1075)
T KOG2171|consen 319 EDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL 398 (1075)
T ss_pred cccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc
Confidence 01111233333 344456667777777777777665433222111235777888889
Q ss_pred cCCCcchHHHHHHHHHHhcCCh-hhHHHHHhcCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHH-HHHHHHcCCHH
Q 008465 432 TEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQQY-LAEAKELGVMG 508 (564)
Q Consensus 432 ~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~k~~A~~~L~~L~~~~~~~-~~~~~~~g~i~ 508 (564)
.++++.|+-.|+.+++.++.+= ...+.-....+++.|+..+.+ ++++++.+|+.+|.|+....+.. ...-++ +++.
T Consensus 399 ~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~ 477 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLME 477 (1075)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHH
Confidence 9999999999999999998652 333334444678888888876 56899999999999987765533 222222 4555
Q ss_pred -HHHHhhhcCCHHHHHHHHHHHHHHHhhHHH
Q 008465 509 -PLVDLAQNGTDRGKRKAAQLLERMSRFIEQ 538 (564)
Q Consensus 509 -~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~ 538 (564)
.|..|.+++++.+++.+..+|.......+.
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 667777889999999999999988876644
No 73
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.32 E-value=5.9e-07 Score=60.40 Aligned_cols=39 Identities=56% Similarity=1.199 Sum_probs=35.9
Q ss_pred CcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCC
Q 008465 167 CPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKT 205 (564)
Q Consensus 167 Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~ 205 (564)
||||++...+|+.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667789976
No 74
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=1.7e-05 Score=83.66 Aligned_cols=272 Identities=15% Similarity=0.142 Sum_probs=180.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHH----hCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCc
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAE----AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 331 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~----~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~ 331 (564)
...++.|.+.|.+.+...+.-|..+|.+++.++.+.-..-.. .-.+|.++.+.+++++.+|.+|+.++-..-.. .
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~-~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII-Q 205 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-C
Confidence 367899999999999899999999999999766543222111 13689999999999999999999887655332 1
Q ss_pred cchhhhc-cCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 008465 332 NKGSIVS-SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI 410 (564)
Q Consensus 332 ~~~~i~~-~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 410 (564)
++..+.. ...++.+..+-...++++|.+.+.+|..|-.....+-.=.-.++++.++..-.+.++.+.-.|+.....++.
T Consensus 206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 2222222 345666666666678999999999999887543322211122777888888888899999999999998988
Q ss_pred ccChhHHHH--HcCChHHHHHhccCCC-----------------------------------------------------
Q 008465 411 YQGNKGKAV--RAGVVPTLMHLLTEPG----------------------------------------------------- 435 (564)
Q Consensus 411 ~~~~~~~i~--~~g~i~~Lv~lL~~~~----------------------------------------------------- 435 (564)
.+-.+..+. -..+||.|++-+...+
T Consensus 286 qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 286 QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccc
Confidence 774443332 2356666665332211
Q ss_pred ---cchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHH----hcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 008465 436 ---GGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVI----GNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMG 508 (564)
Q Consensus 436 ---~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~ 508 (564)
.+++...+++|-.|+. +....+++.++.+| .+..-.+||.++-+|..++.+.-.....=+ .-++|
T Consensus 366 ~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip 437 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIP 437 (885)
T ss_pred cccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHH
Confidence 1122222222222221 11223455555555 445577899999999999875432211101 12688
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008465 509 PLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 509 ~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
.|+.++.+..+-+|...+|.|.....+-
T Consensus 438 ~l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 438 FLLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred HHHHHhccCccceeeeeeeeHhhhhhhH
Confidence 8899999999999999999998887764
No 75
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.5e-07 Score=91.86 Aligned_cols=70 Identities=23% Similarity=0.429 Sum_probs=60.4
Q ss_pred CCCCCCccCcccccCCCCCEEc-CCCCcccHHHHHHHHHhCCCCCCCCCCCCc-CCCCCchHHHHHHHHHHH
Q 008465 159 PVIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLT-STAVTPNYVLRSLIAQWC 228 (564)
Q Consensus 159 ~~~p~~f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~-~~~l~~n~~l~~~i~~~~ 228 (564)
..+..+|.||||+.+++..+++ .|+|.||+.||.+-+..|+..||.|++.+. ...|.++.....+|.+.-
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 3567789999999999998887 699999999999999999999999999986 556888878888877653
No 76
>PF05536 Neurochondrin: Neurochondrin
Probab=98.25 E-value=3.7e-05 Score=83.48 Aligned_cols=195 Identities=20% Similarity=0.179 Sum_probs=145.0
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc----hhhHhhhcCChHHHHHhhccC-------CHHHHHHHHHHHHHhh
Q 008465 341 AVPSIVHVLRIGSMEARENAAATLFSLSVIDE----NKVTIGASGAIPPLVTLLSEG-------TQRGKKDAATALFNLC 409 (564)
Q Consensus 341 ~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~nL~ 409 (564)
.++..+.+|+..+.+-+=.++..+.++...++ .+..+.+.=+++.|-+||+++ ....+..|+..|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46778889988886666677777788877654 244577776679999999873 3566788999999999
Q ss_pred cccChhHHHHHcCChHHHHHhccCCCc-chHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHH
Q 008465 410 IYQGNKGKAVRAGVVPTLMHLLTEPGG-GMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLV 488 (564)
Q Consensus 410 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~ 488 (564)
..++....---.+-||.|++++...+. .+...|+.+|..++.+++|+..+++.|+++.|.+.+.+ .+...+.|..+|.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 976654322223579999999987666 99999999999999999999999999999999999987 6678999999999
Q ss_pred HHhcCCHHHHHHH---HHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008465 489 HLCAGDQQYLAEA---KELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 489 ~L~~~~~~~~~~~---~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
+++.......-.- .-..+++.|...+.......+-.+..+|..+-...
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 9987544211100 00134566666666666666666677666665544
No 77
>PHA02926 zinc finger-like protein; Provisional
Probab=98.24 E-value=7.7e-07 Score=81.72 Aligned_cols=51 Identities=18% Similarity=0.468 Sum_probs=40.8
Q ss_pred CCCCCccCcccccCCCC---------CEEcCCCCcccHHHHHHHHHhC-----CCCCCCCCCCCc
Q 008465 160 VIPDDFRCPISLELMKD---------PVIVSTGQTYERSCIEKWLEAG-----HRTCPKTQQTLT 210 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~d---------Pv~~~cg~t~~r~ci~~~~~~~-----~~~CP~~~~~l~ 210 (564)
....+..|+||++...+ ++..+|+|+||..||.+|.... ...||.||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34567899999987643 3556999999999999999742 356999999876
No 78
>PTZ00429 beta-adaptin; Provisional
Probab=98.23 E-value=0.00025 Score=79.37 Aligned_cols=256 Identities=15% Similarity=0.069 Sum_probs=179.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchh
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 335 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~ 335 (564)
++-+..|-..|.+.+...+..|++.+-.+...+.+.- .+.+..++++.+++.+++.-..-.|.+.+........
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH
Confidence 3557778888888888888888876554432232221 2446778889999999999888888888753332222
Q ss_pred hhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChh
Q 008465 336 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK 415 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 415 (564)
+ ++..+.+=+.+.++.+|..|+++|.++-... .- .-.++++.+.+.+.++-+++.|+.++.++....+.
T Consensus 105 L----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe- 173 (746)
T PTZ00429 105 L----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-VL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ- 173 (746)
T ss_pred H----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-HH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-
Confidence 2 3667777788889999999999999985321 11 12456777888888999999999999998664442
Q ss_pred HHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 008465 416 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 495 (564)
Q Consensus 416 ~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~ 495 (564)
.+...|.++.|..+|.+.++.++..|+.+|..+.......-. ...+.+..|+..|..-++..+...+.+|.. ..|
T Consensus 174 -lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P 248 (746)
T PTZ00429 174 -LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAA---QRP 248 (746)
T ss_pred -cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCC
Confidence 334668899999999999999999999999999755332221 223456777777777778888866666644 222
Q ss_pred HHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 008465 496 QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 496 ~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 535 (564)
...... ..++..+...+++.++.+.-.|..++-.+...
T Consensus 249 ~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 249 SDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred CCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 211111 23566777778888888888888887777643
No 79
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=7.4e-07 Score=91.07 Aligned_cols=70 Identities=27% Similarity=0.672 Sum_probs=59.8
Q ss_pred CCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHHcC
Q 008465 160 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANG 232 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~ 232 (564)
...+++.||||++.+.+|++++|||+||+.|+..++. +...||.|+. ... .+.+|..+..++........
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCC
Confidence 4567899999999999998899999999999999998 7788999996 323 77799999998888876543
No 80
>PF05536 Neurochondrin: Neurochondrin
Probab=98.21 E-value=8.3e-05 Score=80.78 Aligned_cols=233 Identities=20% Similarity=0.213 Sum_probs=164.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChh---hHHHHHHhCCHHHHHHhhCC-------CCHHHHHHHHHHHHhc
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNAD---NRVAIAEAGAIPLLVGLLST-------PDSRTQEHAVTALLNL 326 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~---~r~~i~~~g~i~~Lv~lL~~-------~~~~i~~~A~~~L~nL 326 (564)
..+...+..|++.+.+.+..++--+.++.+.++. .+..+.+.=+.+.|-++|++ +....+.-|+++|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 5688999999999988899999999999886663 34457777667999999987 2356778899999999
Q ss_pred ccCCccchhhhccCChHHHHHHHhcCCH-HHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHH
Q 008465 327 SICEDNKGSIVSSGAVPSIVHVLRIGSM-EARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATAL 405 (564)
Q Consensus 327 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~-e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 405 (564)
+.+++....----+-||.+++++.+.+. ++...+..+|..++..++++..+.+.|+++.|.+.+.+ .+...+.|+.+|
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 9876543322224569999999988866 99999999999999999999999999999999999988 566788999999
Q ss_pred HHhhcccChhHHHH----HcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhh--HHHHHhc----CChHHHHHHHhcC
Q 008465 406 FNLCIYQGNKGKAV----RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEG--KAAIGAA----EAVPVLVEVIGNG 475 (564)
Q Consensus 406 ~nL~~~~~~~~~i~----~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~--~~~i~~~----g~i~~Lv~lL~~~ 475 (564)
.+++........-- -..+++.+...+.......+-..+..|..+-...+. ....... .+...+..+|.+.
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 99887655221101 113455566666555556666778888866544321 1111111 2334455556553
Q ss_pred -ChHHHHHHHHHHHHH
Q 008465 476 -SPRNRENAAAVLVHL 490 (564)
Q Consensus 476 -~~~~k~~A~~~L~~L 490 (564)
.+..|..|..+..+|
T Consensus 244 ~~~~~R~~al~Laa~L 259 (543)
T PF05536_consen 244 LTPSQRDPALNLAASL 259 (543)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 355555555444443
No 81
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.21 E-value=0.00063 Score=70.36 Aligned_cols=273 Identities=18% Similarity=0.210 Sum_probs=191.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC--CHHHHHHHHHHHHhcccCCccchhh
Q 008465 259 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP--DSRTQEHAVTALLNLSICEDNKGSI 336 (564)
Q Consensus 259 i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~i~~~A~~~L~nLs~~~~~~~~i 336 (564)
.+.+...+-+++.+++..+.+.+|.+.. +...-..+...++--.++..|..+ +..-+++|+..+..+.....+...
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~- 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE- 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-
Confidence 3444445555668899999999999885 677777888888766777777654 445677899888877654333332
Q ss_pred hccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhH
Q 008465 337 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG 416 (564)
Q Consensus 337 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 416 (564)
+..|.+..++.+..+.+...+..+..+|..|+..+ ...+...|++..|++.+-++........+.++..+...+..|.
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 36788999999999998899999999999998653 3456678999999999998877788889999999999999887
Q ss_pred HHHHcCChHHHHHhccCC-------Cc--chHHHHHHHHHHhcCChhhHHHHHhc--CChHHHHHHHhcCChHHHHHHHH
Q 008465 417 KAVRAGVVPTLMHLLTEP-------GG--GMVDEALAILAILSSHPEGKAAIGAA--EAVPVLVEVIGNGSPRNRENAAA 485 (564)
Q Consensus 417 ~i~~~g~i~~Lv~lL~~~-------~~--~~~~~al~~L~~L~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~k~~A~~ 485 (564)
.+...--+..++.-+.+. +. +....+..++..+-....|-..+... .++..|+..|..+++.+|.....
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ild 262 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILD 262 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 665443445554444332 11 23334444444444444444333322 46788888888777777777776
Q ss_pred HHHHHhc-------------------CC-------------------------H----HH----HHHHHHcCCHHHHHHh
Q 008465 486 VLVHLCA-------------------GD-------------------------Q----QY----LAEAKELGVMGPLVDL 513 (564)
Q Consensus 486 ~L~~L~~-------------------~~-------------------------~----~~----~~~~~~~g~i~~L~~L 513 (564)
++..+-. +. . .+ ...+++.|+++.|+++
T Consensus 263 ll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~l 342 (371)
T PF14664_consen 263 LLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVEL 342 (371)
T ss_pred HHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 6655431 00 0 01 1334689999999999
Q ss_pred hhcC-CHHHHHHHHHHHHHHHhh
Q 008465 514 AQNG-TDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 514 l~~~-~~~~k~~A~~lL~~l~~~ 535 (564)
+.+. ++....+|.-+|..+-..
T Consensus 343 i~~~~d~~l~~KAtlLL~elL~l 365 (371)
T PF14664_consen 343 IESSEDSSLSRKATLLLGELLHL 365 (371)
T ss_pred HhcCCCchHHHHHHHHHHHHHHH
Confidence 9987 889999999999876543
No 82
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=7.8e-05 Score=82.39 Aligned_cols=241 Identities=18% Similarity=0.154 Sum_probs=178.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHH---HHhCCHHHHHHhhCCCCHHHHHHHHHHHHhc-ccCCcc
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAI---AEAGAIPLLVGLLSTPDSRTQEHAVTALLNL-SICEDN 332 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i---~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nL-s~~~~~ 332 (564)
+.++..++.|-| |..=+++|..|++--+-....+ ..-|+.|.+++||+++-.+++---+-+-..+ +.|+..
T Consensus 472 eQLPiVLQVLLS-----QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SC 546 (1387)
T KOG1517|consen 472 EQLPIVLQVLLS-----QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSC 546 (1387)
T ss_pred HhcchHHHHHHH-----HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchh
Confidence 455555555543 4444555555554333333333 4559999999999999888887766666664 778788
Q ss_pred chhhhccCChHHHHHHHhc-C--CHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccC-CHHHHHHHHHHHHH
Q 008465 333 KGSIVSSGAVPSIVHVLRI-G--SMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEG-TQRGKKDAATALFN 407 (564)
Q Consensus 333 ~~~i~~~g~i~~Lv~lL~~-~--~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~n 407 (564)
+..+++.++-.-++.+|.. + ++|-|..|+.+|..+..+- -.++...+.+.+...+..|.++ .+-.+...+-+|+.
T Consensus 547 Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~ 626 (1387)
T KOG1517|consen 547 QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGR 626 (1387)
T ss_pred HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 9999999888889999887 3 4688999999999998773 4566667778889889999886 57788999999999
Q ss_pred hhcc-cChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC-----hhhHHHH---H--------hcCChH----
Q 008465 408 LCIY-QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-----PEGKAAI---G--------AAEAVP---- 466 (564)
Q Consensus 408 L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~-----~~~~~~i---~--------~~g~i~---- 466 (564)
|..+ ++.|..=++.++...|..+|+++-++|+.+|+.+|+.+..+ ++....+ + -+..+.
T Consensus 627 LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~ 706 (1387)
T KOG1517|consen 627 LWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLM 706 (1387)
T ss_pred HhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHH
Confidence 9876 45566667889999999999999999999999999988663 3322221 1 112233
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008465 467 VLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAK 502 (564)
Q Consensus 467 ~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~ 502 (564)
.++.++..+++-++...+.+|..+..+...+...+.
T Consensus 707 ~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 707 SLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 677788889999999888889888876655544443
No 83
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.19 E-value=0.00015 Score=75.79 Aligned_cols=222 Identities=17% Similarity=0.064 Sum_probs=131.1
Q ss_pred hHHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchh
Q 008465 257 TKIEILLCKLT-SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 335 (564)
Q Consensus 257 ~~i~~Lv~~L~-s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~ 335 (564)
..++.++..|. ..+.+....++..+... ..+. ++..|+..|.+.++.++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i--------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWL--------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcC---------
Confidence 45677777774 34455554444333211 1111 266777777777777777777776533
Q ss_pred hhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChh
Q 008465 336 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK 415 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 415 (564)
...++.+.|+.+|++.++.++..++.++... .....+.|+.+|++.++.++..|+.+|+.+-.
T Consensus 114 -~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----- 176 (410)
T TIGR02270 114 -GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR----- 176 (410)
T ss_pred -CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----
Confidence 3345566677777776777776666555441 11234567777777777777777777775532
Q ss_pred HHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHH------------------h----cCChHHHHHHHh
Q 008465 416 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIG------------------A----AEAVPVLVEVIG 473 (564)
Q Consensus 416 ~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~------------------~----~g~i~~Lv~lL~ 473 (564)
...++.|...+.+.++.++..|+..|..+.. ++....+. . ...++.|..+++
T Consensus 177 -----~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~ 250 (410)
T TIGR02270 177 -----RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQ 250 (410)
T ss_pred -----ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhc
Confidence 2445556666666777777777766655533 21111111 0 123455555555
Q ss_pred cCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008465 474 NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 474 ~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
. +.++..++.+|..+.. ...++.|+..+.+. ..++.|.+.++.|+-..
T Consensus 251 d--~~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 251 A--AATRREALRAVGLVGD-----------VEAAPWCLEAMREP--PWARLAGEAFSLITGMD 298 (410)
T ss_pred C--hhhHHHHHHHHHHcCC-----------cchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence 4 3367777777766544 24788888877655 38999999999988644
No 84
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3.5e-06 Score=90.99 Aligned_cols=55 Identities=24% Similarity=0.538 Sum_probs=49.7
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCc
Q 008465 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTP 216 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 216 (564)
.+-+.||+|..-.+|.|++.|||.||..||++.+.-..+.||.|+..|...++.+
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 3558999999999999999999999999999999988999999999998777654
No 85
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.13 E-value=3.3e-06 Score=82.86 Aligned_cols=51 Identities=25% Similarity=0.559 Sum_probs=40.8
Q ss_pred CCccCcccccC-CCCCE----EcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 008465 163 DDFRCPISLEL-MKDPV----IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTA 213 (564)
Q Consensus 163 ~~f~Cpic~~l-m~dPv----~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 213 (564)
++..||+|..- ...|- +.+|||.||.+|+...|..|...||.|+.++....
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 45789999972 33443 22799999999999988878889999999988665
No 86
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.09 E-value=2.7e-06 Score=59.14 Aligned_cols=41 Identities=24% Similarity=0.599 Sum_probs=34.7
Q ss_pred cCcccccCC---CCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCC
Q 008465 166 RCPISLELM---KDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQ 207 (564)
Q Consensus 166 ~Cpic~~lm---~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~ 207 (564)
.|++|.+.+ ..|++++|||+||..|+.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999888 357788999999999999988 45678999974
No 87
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.08 E-value=0.00051 Score=69.52 Aligned_cols=226 Identities=14% Similarity=0.095 Sum_probs=170.1
Q ss_pred CHHHHHHhhCCC-CHHHHHHHHHHHHhcccCCccchhhhc-------cCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc
Q 008465 300 AIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDNKGSIVS-------SGAVPSIVHVLRIGSMEARENAAATLFSLSVID 371 (564)
Q Consensus 300 ~i~~Lv~lL~~~-~~~i~~~A~~~L~nLs~~~~~~~~i~~-------~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~ 371 (564)
.+..++.+++.. .++....++..+..+-..+..+..+.. ...-...+.+|..++.-+...+.+++..++...
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 567788888874 455666677777766555555555542 334778899999999888888999999998776
Q ss_pred chhhHhhhcC-ChHHHHHhhcc-CCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccC--CCcchHHHHHHHHH
Q 008465 372 ENKVTIGASG-AIPPLVTLLSE-GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE--PGGGMVDEALAILA 447 (564)
Q Consensus 372 ~~~~~i~~~g-~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~al~~L~ 447 (564)
..+....+.. ....|...+.+ .+.....-|+.+|..+...++.|..++.+.++..++..+.+ .+..++-..+.+++
T Consensus 146 ~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciW 225 (442)
T KOG2759|consen 146 NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIW 225 (442)
T ss_pred cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHH
Confidence 5544333332 23334445555 46778888999999999999999999999999999999843 55678899999999
Q ss_pred HhcCChhhHHHHHhcCChHHHHHHHhcCC-hHHHHHHHHHHHHHhcCCH------HHHHHHHHcCCHHHHHHhhhcC--C
Q 008465 448 ILSSHPEGKAAIGAAEAVPVLVEVIGNGS-PRNRENAAAVLVHLCAGDQ------QYLAEAKELGVMGPLVDLAQNG--T 518 (564)
Q Consensus 448 ~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~k~~A~~~L~~L~~~~~------~~~~~~~~~g~i~~L~~Ll~~~--~ 518 (564)
.|+-++...+.+...+.|+.|.++++... .++..-+++++.|++..++ ..+..++..++.+.+..|.... +
T Consensus 226 lLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysD 305 (442)
T KOG2759|consen 226 LLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSD 305 (442)
T ss_pred HhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCc
Confidence 99999988888877789999999998643 5677778899999998774 4557778888888888887765 4
Q ss_pred HHHHHHH
Q 008465 519 DRGKRKA 525 (564)
Q Consensus 519 ~~~k~~A 525 (564)
+.+....
T Consensus 306 EDL~~di 312 (442)
T KOG2759|consen 306 EDLVDDI 312 (442)
T ss_pred HHHHHHH
Confidence 5444433
No 88
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.3e-06 Score=88.01 Aligned_cols=70 Identities=29% Similarity=0.554 Sum_probs=56.6
Q ss_pred CccCcccccCCCCCEEcCCCCcccHHHHHHHHHh----CCCCCCCCCCCCcCCCCCchH----HHHHHHHHHHHHcCC
Q 008465 164 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA----GHRTCPKTQQTLTSTAVTPNY----VLRSLIAQWCEANGI 233 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~----~~~~CP~~~~~l~~~~l~~n~----~l~~~i~~~~~~~~~ 233 (564)
+..||||++...-|+.+.|||.||-.||.++|.- +...||.|+..+...++.|-+ .-+..+...+..||+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~ 263 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGI 263 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCC
Confidence 7899999999999999999999999999999974 457899999998865554432 334457777788884
No 89
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=8.6e-05 Score=72.03 Aligned_cols=233 Identities=15% Similarity=0.123 Sum_probs=157.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhh-ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhc
Q 008465 302 PLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS 380 (564)
Q Consensus 302 ~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~ 380 (564)
-.++.+|.+.++.++..|+..+.+++.. ..+.... +.-.++.+.++++...+ .+.|+.+|.|++.....++.+...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 4578899999999999999999999766 2233222 34567778888877655 678999999999998888888777
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHH---H----cCChHHHHHhccCCCc--chHHHHHHHHHHhcC
Q 008465 381 GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV---R----AGVVPTLMHLLTEPGG--GMVDEALAILAILSS 451 (564)
Q Consensus 381 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~---~----~g~i~~Lv~lL~~~~~--~~~~~al~~L~~L~~ 451 (564)
.+..++.++-+.....-..++.+|.||+..++....+. . .|.+.........+.. .-..+...++.||+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 88888888887766677888999999999888765443 2 3444444444433222 234567888899999
Q ss_pred ChhhHHHHHhcCCh--HHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHH-----------------
Q 008465 452 HPEGKAAIGAAEAV--PVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKE-LGVMGPLV----------------- 511 (564)
Q Consensus 452 ~~~~~~~i~~~g~i--~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~----------------- 511 (564)
.+.+|..+.....+ ..++.+-..++.--|...+++|.|.|....-+-..+.. ..+.+.|+
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~L 241 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKL 241 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcC
Confidence 99999998876532 33333333223333556789999999866433322221 11222222
Q ss_pred ----Hhhh-----cCCHHHHHHHHHHHHHHHhhHHH
Q 008465 512 ----DLAQ-----NGTDRGKRKAAQLLERMSRFIEQ 538 (564)
Q Consensus 512 ----~Ll~-----~~~~~~k~~A~~lL~~l~~~~~~ 538 (564)
+++- .+++.++..-.++|-.|+.....
T Consensus 242 P~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G 277 (353)
T KOG2973|consen 242 PVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG 277 (353)
T ss_pred CHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh
Confidence 2222 24677888888888877755443
No 90
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.5e-06 Score=80.49 Aligned_cols=52 Identities=21% Similarity=0.443 Sum_probs=45.5
Q ss_pred CCCCccCcccccCCCCCEEcCCCCcccHHHHHH-HHHhCCCCCCCCCCCCcCC
Q 008465 161 IPDDFRCPISLELMKDPVIVSTGQTYERSCIEK-WLEAGHRTCPKTQQTLTST 212 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~-~~~~~~~~CP~~~~~l~~~ 212 (564)
+..+|.|+||.+.+.+|+.++|||.||-.||.. |-.+....||.||+.....
T Consensus 212 p~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 212 PLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred cccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 356899999999999999999999999999999 8876666799999876533
No 91
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.2e-05 Score=87.27 Aligned_cols=150 Identities=23% Similarity=0.325 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhHhhhcCCC
Q 008465 52 VELYEELLSLYNKNNDVTPDPAVLRGLAEKLQLMGIADLTQESLALHEMVASTGGDPGETIEKMSMLLKKIKDFVQTENP 131 (564)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 131 (564)
.++...|..+|-+..+ ...+-.+..+.|-++..++..+....-+ +........++.+..|..+.......+..
T Consensus 787 k~ll~~i~~iYlnl~~----~~~F~~avA~D~RSys~~lF~~a~~~~~---k~~l~~~~~Ie~~s~la~~~~~~~~~~~~ 859 (943)
T KOG2042|consen 787 KQLLSQLSDIYLNLSS----EPSFVEAVAKDGRSYSEELFNHAISILR---KRILKSSRQIEEFSELAERVEATASIDAE 859 (943)
T ss_pred HHHHHHHHHHHHhhcc----chhHHHHHhccccccCHHHHhhhHHHHH---HhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777776644221 3456667777888888888777755441 12233455677788877777654333211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCccCcccccCCCCCEEcC-CCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 132 NLDAPLKEKNPGPSQGGQASSDRNHKAPVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~Cpic~~lm~dPv~~~-cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
+ +..-.++|++|.-|+...+|.|||++| +|++.||+-|.+++- ...+-|.||.+|+
T Consensus 860 e----------------------ee~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlL-s~~tdPFNR~pLt 916 (943)
T KOG2042|consen 860 E----------------------EEELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLL-SDCTDPFNREPLT 916 (943)
T ss_pred H----------------------HHHhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHh-cCCCCccccccCc
Confidence 1 011125899999999999999999997 899999999999988 5678899999999
Q ss_pred CCCCCchHHHHHHHHHHHHHc
Q 008465 211 STAVTPNYVLRSLIAQWCEAN 231 (564)
Q Consensus 211 ~~~l~~n~~l~~~i~~~~~~~ 231 (564)
...+.||..++.-|..|....
T Consensus 917 ~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 917 EDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred hhhcCCCHHHHHHHHHHHHHh
Confidence 999999999999999997753
No 92
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.02 E-value=7.6e-06 Score=55.99 Aligned_cols=40 Identities=53% Similarity=0.696 Sum_probs=38.0
Q ss_pred ChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcc
Q 008465 288 NADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 327 (564)
Q Consensus 288 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs 327 (564)
+++++..+++.|++|.|+.+|++++.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999999999999996
No 93
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.01 E-value=5.2e-05 Score=73.43 Aligned_cols=191 Identities=16% Similarity=0.114 Sum_probs=121.9
Q ss_pred hcCCHHHHHHHHHHHHhccCCc---chhhHhhhc--CChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCCh
Q 008465 350 RIGSMEARENAAATLFSLSVID---ENKVTIGAS--GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVV 424 (564)
Q Consensus 350 ~~~~~e~~~~a~~~L~~Ls~~~---~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i 424 (564)
.+.+++.+..|+..|..+.... .....+... ..+..+...+.+....+.+.|+.++..|+..-.......-..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4458999999999998887655 233333322 56677777777777788899999999998775555443445788
Q ss_pred HHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHH--
Q 008465 425 PTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAK-- 502 (564)
Q Consensus 425 ~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~-- 502 (564)
|.|+..+.++...+++.|..+|..++.+-.....+ .++.+...+.+.++.+|..++..|..+....+.....+.
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 99999999888889999999999888764411111 145666677888999999999988888765551111111
Q ss_pred --HcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 008465 503 --ELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQV 544 (564)
Q Consensus 503 --~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~ 544 (564)
-..+++.+...+.++++.+|+.|..++..+.+..+.+...+-
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 134788999999999999999999999999887766554443
No 94
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.01 E-value=6.9e-06 Score=78.03 Aligned_cols=66 Identities=20% Similarity=0.449 Sum_probs=57.2
Q ss_pred ccCcccccCCCCCEEc-CCCCcccHHHHHHHHHhCCCCCCCCCC-CCcCCCCCchHHHHHHHHHHHHH
Q 008465 165 FRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQ-TLTSTAVTPNYVLRSLIAQWCEA 230 (564)
Q Consensus 165 f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~-~l~~~~l~~n~~l~~~i~~~~~~ 230 (564)
+.||+|+.++++|+-+ +|||+||..||+..+-...+.||.|.. .+-...++|+...+..++.+..+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 9999999999999987 789999999999999888999999965 34456788998888888877664
No 95
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.00 E-value=0.00013 Score=71.00 Aligned_cols=227 Identities=18% Similarity=0.144 Sum_probs=162.4
Q ss_pred hhCCCCHHHHHHHHHHHHhcccCCccchhhh-ccCChHHHHHHHhcC--CHHHHHHHHHHHHhccCCcchhhHhhhc-CC
Q 008465 307 LLSTPDSRTQEHAVTALLNLSICEDNKGSIV-SSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDENKVTIGAS-GA 382 (564)
Q Consensus 307 lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~~-g~ 382 (564)
+++.-++-++..|+.+|.++....+.|..+- ++.+-..+++.+++. ..+++.+..-+++.|+..++....|-.. ..
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344455578889999999999888776654 566778899999875 5889999999999999988877555443 67
Q ss_pred hHHHHHhhccC-CHHHHHHHHHHHHHhhccc--ChhHHHHHcCChHHHHHhccC---CCcchHHHHHHHHH-------Hh
Q 008465 383 IPPLVTLLSEG-TQRGKKDAATALFNLCIYQ--GNKGKAVRAGVVPTLMHLLTE---PGGGMVDEALAILA-------IL 449 (564)
Q Consensus 383 i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~--~~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~al~~L~-------~L 449 (564)
|.-|+.+++.. .+.+.+.++.++.|++... .....+.-.|-+.+-++.|.. .+.+++...-.+=. .|
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 78888888765 4678889999999998833 222344555656666666644 33333322211111 11
Q ss_pred cC---------------Ch---------hhHHHHHhc--CChHHHHHHHhcCChHH-HHHHHHHHHHHhcCCHHHHHHHH
Q 008465 450 SS---------------HP---------EGKAAIGAA--EAVPVLVEVIGNGSPRN-RENAAAVLVHLCAGDQQYLAEAK 502 (564)
Q Consensus 450 ~~---------------~~---------~~~~~i~~~--g~i~~Lv~lL~~~~~~~-k~~A~~~L~~L~~~~~~~~~~~~ 502 (564)
|. .| .+...+.+. ..+..|.++|+...+.+ -.-|+.=|..+....|+....+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 11 11 133344333 36788999999877663 34466778888888999999999
Q ss_pred HcCCHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 008465 503 ELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 503 ~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
..|+-+.+++|+.++++++|-.|..++..+-
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999987764
No 96
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0003 Score=73.32 Aligned_cols=230 Identities=17% Similarity=0.163 Sum_probs=160.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHh---hChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccc
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAK---RNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK 333 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~---~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~ 333 (564)
....-|+.+|..++.+++..+=..|..+-. .+|.. +--...++.++.-+.++++.+|..|+.-+..+..-....
T Consensus 208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~ 284 (675)
T KOG0212|consen 208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD 284 (675)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc
Confidence 456677888888888888655444444322 22221 122357899999999999999999987777665444333
Q ss_pred hhhhccCChHHHHHHHhcCCH-HHHHHHH---HHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 008465 334 GSIVSSGAVPSIVHVLRIGSM-EARENAA---ATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLC 409 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~-e~~~~a~---~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 409 (564)
-...-+|++..++..+.+..+ .+++.+. ..|..+......+..+.-...+..|.+.+.++..+.+..++..+..|-
T Consensus 285 ~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~ 364 (675)
T KOG0212|consen 285 LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLY 364 (675)
T ss_pred hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 334457777777777766543 2343333 234445444444433444467888999999999999999999999998
Q ss_pred cccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHH
Q 008465 410 IYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 489 (564)
Q Consensus 410 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~ 489 (564)
...++....-...+++.|+.-|++.+.+++..++.+++++|..+....- -..+..|+++......-....+.-++..
T Consensus 365 ~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRq 441 (675)
T KOG0212|consen 365 HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQ 441 (675)
T ss_pred hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHH
Confidence 8888876666778999999999999999999999999999987754411 1134455555555556677788888888
Q ss_pred Hhc
Q 008465 490 LCA 492 (564)
Q Consensus 490 L~~ 492 (564)
||.
T Consensus 442 lC~ 444 (675)
T KOG0212|consen 442 LCL 444 (675)
T ss_pred HHH
Confidence 885
No 97
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.0014 Score=64.20 Aligned_cols=272 Identities=15% Similarity=0.097 Sum_probs=182.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhChhh----HHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhh
Q 008465 262 LLCKLTSGSPEDQRSAAGEIRLLAKRNADN----RVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV 337 (564)
Q Consensus 262 Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~----r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~ 337 (564)
|-..|..++..++.-+++.+.-+..+.+.| ...++.+|+.+.++.++..+|.++-..|+..+..++..+..-+.|.
T Consensus 87 LQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiF 166 (524)
T KOG4413|consen 87 LQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIF 166 (524)
T ss_pred HHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhc
Confidence 333344455556666666666665544422 2234577999999999999999999999999999999888888888
Q ss_pred ccCChHHHHHH--HhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcccC
Q 008465 338 SSGAVPSIVHV--LRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSE-GTQRGKKDAATALFNLCIYQG 413 (564)
Q Consensus 338 ~~g~i~~Lv~l--L~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~ 413 (564)
+....+.+-.. -...+.-+|......+..+++.+ +.....-.+|.+..|..=|+. .+.-++.+++.....|.....
T Consensus 167 eSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteH 246 (524)
T KOG4413|consen 167 ESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH 246 (524)
T ss_pred ccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh
Confidence 77776665332 22334456666777776666554 344444456887777777765 466778888999999999999
Q ss_pred hhHHHHHcCChHHHHHhccC--CCcchHHHHHHHHHHhcC----ChhhHHHHHhc--CChHHHHHHHhcCChHHHHHHHH
Q 008465 414 NKGKAVRAGVVPTLMHLLTE--PGGGMVDEALAILAILSS----HPEGKAAIGAA--EAVPVLVEVIGNGSPRNRENAAA 485 (564)
Q Consensus 414 ~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~al~~L~~L~~----~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~k~~A~~ 485 (564)
++..+.+.|.|..+..++.. .++.-.-.++-....+-. .+-.-+++.+. -.|...++++...+|+..+.|+.
T Consensus 247 greflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiD 326 (524)
T KOG4413|consen 247 GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAID 326 (524)
T ss_pred hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHH
Confidence 99999999999999999865 334334445444443322 22122233322 24667778888899999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCC--HHHHHHhhhcCCHHHH-HHHHHHHHHHHh
Q 008465 486 VLVHLCAGDQQYLAEAKELGV--MGPLVDLAQNGTDRGK-RKAAQLLERMSR 534 (564)
Q Consensus 486 ~L~~L~~~~~~~~~~~~~~g~--i~~L~~Ll~~~~~~~k-~~A~~lL~~l~~ 534 (564)
++..+.++. +..+.+...|- .+.|+.-..+.+..++ +.+..+|.++..
T Consensus 327 alGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 327 ALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 999998755 66677777663 4555544444444443 445556666553
No 98
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.86 E-value=0.00091 Score=69.17 Aligned_cols=251 Identities=15% Similarity=0.114 Sum_probs=172.8
Q ss_pred HHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcC--CHHHHH
Q 008465 281 IRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG--SMEARE 358 (564)
Q Consensus 281 L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~--~~e~~~ 358 (564)
|-.+-+..+.-+..+.-....+.+..++-+++.+++..+.+++..+..+...-..+.+.+.--.++.-|..+ +..-|+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~ 86 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVERE 86 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHH
Confidence 444444555555555444455666655555569999999999999998888888888888777788888665 345678
Q ss_pred HHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcch
Q 008465 359 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGM 438 (564)
Q Consensus 359 ~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 438 (564)
+|...+..+.....+...+ ..|++..++.+..+.+++.+..++.+|+.|+..++. .++..|++..|++.+.++...+
T Consensus 87 QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~--lv~~~gG~~~L~~~l~d~~~~~ 163 (371)
T PF14664_consen 87 QALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE--LVAECGGIRVLLRALIDGSFSI 163 (371)
T ss_pred HHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH--HHHHcCCHHHHHHHHHhccHhH
Confidence 8998888886554333222 458899999999999999999999999999886543 4568999999999998766668
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcC-------ChH--HHHHHHHHHHHHhcCCHHHHHHHHH-cCCHH
Q 008465 439 VDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG-------SPR--NRENAAAVLVHLCAGDQQYLAEAKE-LGVMG 508 (564)
Q Consensus 439 ~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~--~k~~A~~~L~~L~~~~~~~~~~~~~-~g~i~ 508 (564)
.+..+.++..+-+.|..|..+...--+..++.-+.+. +.+ --..+..++..+-..=+.-.....+ ...+.
T Consensus 164 ~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lk 243 (371)
T PF14664_consen 164 SESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLK 243 (371)
T ss_pred HHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHH
Confidence 8889999999999999988776533344444433221 121 1222333333332211111111111 24688
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 509 PLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 509 ~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
.|+..+..+++++++....++-.+-+
T Consensus 244 sLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 244 SLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 89999999999999988888776654
No 99
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0045 Score=63.05 Aligned_cols=238 Identities=17% Similarity=0.144 Sum_probs=174.5
Q ss_pred HHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCC------cc----chhhhccCChHHH
Q 008465 276 SAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE------DN----KGSIVSSGAVPSI 345 (564)
Q Consensus 276 ~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~------~~----~~~i~~~g~i~~L 345 (564)
..++.+..++ .-|+-.-.+++.++|+.|+.+|...+.++-...+..|..|...+ ++ ...+++.++++.|
T Consensus 103 d~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 3455566666 36777778899999999999999999999999999998886421 21 3355678999999
Q ss_pred HHHHhcCCHH------HHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcccC-hh
Q 008465 346 VHVLRIGSME------ARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEG--TQRGKKDAATALFNLCIYQG-NK 415 (564)
Q Consensus 346 v~lL~~~~~e------~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~nL~~~~~-~~ 415 (564)
++-+.+=+.. ...++...+.|+.... .....+++.|.+..|+..+... -..-+..|...|.-+..+.. ++
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 9888654333 3456677788887664 5677778889888888866543 23445666777776655544 77
Q ss_pred HHHHHcCChHHHHHhccC---CC------cchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 008465 416 GKAVRAGVVPTLMHLLTE---PG------GGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAV 486 (564)
Q Consensus 416 ~~i~~~g~i~~Lv~lL~~---~~------~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~ 486 (564)
.......+|..+++-+.- .+ .++.+.-..+|..+...+.++..++...++....-+++. ....+-.|..+
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv 340 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKV 340 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence 777778888888876633 22 356677788888888899999999998888877777765 44567788899
Q ss_pred HHHHhcCCH--HHHHHHHHcCCHHHHHHhhh
Q 008465 487 LVHLCAGDQ--QYLAEAKELGVMGPLVDLAQ 515 (564)
Q Consensus 487 L~~L~~~~~--~~~~~~~~~g~i~~L~~Ll~ 515 (564)
|-....+.+ .+|..+++.++...+..+..
T Consensus 341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 988887776 78888888777766666654
No 100
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.81 E-value=1.6e-05 Score=61.83 Aligned_cols=39 Identities=33% Similarity=0.870 Sum_probs=31.0
Q ss_pred CcccccCCCC------------CEE-cCCCCcccHHHHHHHHHhCCCCCCCCC
Q 008465 167 CPISLELMKD------------PVI-VSTGQTYERSCIEKWLEAGHRTCPKTQ 206 (564)
Q Consensus 167 Cpic~~lm~d------------Pv~-~~cg~t~~r~ci~~~~~~~~~~CP~~~ 206 (564)
|+||++.+.+ |+. .+|||.|...||.+|+.. +.+||.||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 9999998833 333 489999999999999984 55999996
No 101
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.81 E-value=0.0002 Score=72.92 Aligned_cols=181 Identities=16% Similarity=0.180 Sum_probs=143.5
Q ss_pred HHHHHHhCCHHHHHHhhCCCCHHH--HHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcC-CHHHHHHHHHHHHhcc
Q 008465 292 RVAIAEAGAIPLLVGLLSTPDSRT--QEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLS 368 (564)
Q Consensus 292 r~~i~~~g~i~~Lv~lL~~~~~~i--~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls 368 (564)
+..+...|+...|++++.+++.+. +..+...|-.+. ..+|++.++.-| +..|+.+-+.. .++.....+.+|.++.
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 345667799999999999987655 777887776653 356788888766 66666665543 6888999999999998
Q ss_pred CCc-chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhccc--ChhHHHHHcCChHHHHHhccCCCcchHHHHHHH
Q 008465 369 VID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ--GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 445 (564)
Q Consensus 369 ~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~ 445 (564)
.++ +....+++.|+++.++-..+..++.+..+++.+|+|.+.+. ..+.+|++..+-..|..+-.+.+.-++-+|+-+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 775 56778889999999999999889999999999999988764 456689998999999988877777788889999
Q ss_pred HHHhcCChhhHHHHHhcCChHHHHHHHhc
Q 008465 446 LAILSSHPEGKAAIGAAEAVPVLVEVIGN 474 (564)
Q Consensus 446 L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~ 474 (564)
.+.|+.+.+.-..+...|.+..+-.++.+
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~ 359 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVAS 359 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhc
Confidence 99999988877777777755444444444
No 102
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.80 E-value=0.0021 Score=66.10 Aligned_cols=187 Identities=29% Similarity=0.318 Sum_probs=139.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhh
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 336 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i 336 (564)
..+..+++.+.+.++..+..|...+..+.. .-+++.|..++.+.++.+|..|+.+|+.+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 568889999999889999998888655432 236799999999999999999999876663
Q ss_pred hccCChHHHHHHHhc-CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHH------------HHHHHHH
Q 008465 337 VSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQR------------GKKDAAT 403 (564)
Q Consensus 337 ~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~------------~~~~a~~ 403 (564)
...+++.++.+|.. .+..+|..++.+|..+- ....+.+|+..+.+.... ++..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 35578999999994 78999999999999885 233478888888776532 2333333
Q ss_pred HHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHH
Q 008465 404 ALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENA 483 (564)
Q Consensus 404 aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A 483 (564)
+|..+ .....++.+..++.+....++..|...|..+.... ....+.+...+.+.+..++..+
T Consensus 172 ~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 33322 23457888899998888889999999999887764 2355777777777788888777
Q ss_pred HHHHHHHhc
Q 008465 484 AAVLVHLCA 492 (564)
Q Consensus 484 ~~~L~~L~~ 492 (564)
+..|..+-.
T Consensus 234 ~~~l~~~~~ 242 (335)
T COG1413 234 LLALGEIGD 242 (335)
T ss_pred HHHhcccCc
Confidence 777766543
No 103
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.80 E-value=1.1e-05 Score=78.60 Aligned_cols=64 Identities=20% Similarity=0.471 Sum_probs=51.6
Q ss_pred CCCCCccCcccccCCCCCEEc-CCCCcccHHHHHHHHHhCCCCCCCCCCCCcCC----CCCchHHHHHHH
Q 008465 160 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTST----AVTPNYVLRSLI 224 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~----~l~~n~~l~~~i 224 (564)
++-....|++|..+|.|+.++ .|-||||++||-+++.. +.+||.|...+... .+.++..+.+++
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiV 79 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIV 79 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHH
Confidence 455678999999999999986 79999999999999996 88899998776533 355566665554
No 104
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.80 E-value=0.0015 Score=69.59 Aligned_cols=259 Identities=14% Similarity=0.154 Sum_probs=173.0
Q ss_pred HHHHHHHHHhhChhhHHHHHHhCCHHHHHHhh----------CCCCHHHHHHHHHHHHhcccCC-ccchhhhccCChHHH
Q 008465 277 AAGEIRLLAKRNADNRVAIAEAGAIPLLVGLL----------STPDSRTQEHAVTALLNLSICE-DNKGSIVSSGAVPSI 345 (564)
Q Consensus 277 al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL----------~~~~~~i~~~A~~~L~nLs~~~-~~~~~i~~~g~i~~L 345 (564)
|+..|+.+++ ++.+...+....++..|+++- ...+..+...|+.+|+|+.... ..|..+++.|+.+.+
T Consensus 1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3566777775 566666666666677777655 2357889999999999997754 458888899999999
Q ss_pred HHHHhcC-----CHHHHHHHHHHHHhccCC-cchhhHhhhc-CChHHHHHhhcc-----------------CCHHHHHHH
Q 008465 346 VHVLRIG-----SMEARENAAATLFSLSVI-DENKVTIGAS-GAIPPLVTLLSE-----------------GTQRGKKDA 401 (564)
Q Consensus 346 v~lL~~~-----~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~-g~i~~Lv~lL~~-----------------~~~~~~~~a 401 (564)
+..|+.. +.+..-...++||-++.. ...+..+.+. +++..++..|.. .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999887 678888899999888765 4566565554 777777766532 023446788
Q ss_pred HHHHHHhhcccChhHHHHHcCChHHHHHhccC---------CCcchHHHHHHHHHHhcCCh-hh-------HHH----HH
Q 008465 402 ATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE---------PGGGMVDEALAILAILSSHP-EG-------KAA----IG 460 (564)
Q Consensus 402 ~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~---------~~~~~~~~al~~L~~L~~~~-~~-------~~~----i~ 460 (564)
+++++|+..+......-...+.++.|+.+|.. +.......++.+|.|+--.. .. ... ..
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 99999998765554331223444444444321 22355677778887772111 10 000 11
Q ss_pred hcCChHHHHHHHhc----CC----hHHHHHHHHHHHHHhcCCHHHHHHHHH----------------cCCHHHHHHhhhc
Q 008465 461 AAEAVPVLVEVIGN----GS----PRNRENAAAVLVHLCAGDQQYLAEAKE----------------LGVMGPLVDLAQN 516 (564)
Q Consensus 461 ~~g~i~~Lv~lL~~----~~----~~~k~~A~~~L~~L~~~~~~~~~~~~~----------------~g~i~~L~~Ll~~ 516 (564)
....+..|+.+|+. .. ...-.--+.+|.+++..+...++.+.. ..+-..|+.++.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 22357788888754 11 123334557777777776555555532 2467889999999
Q ss_pred CCHHHHHHHHHHHHHHHhhH
Q 008465 517 GTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 517 ~~~~~k~~A~~lL~~l~~~~ 536 (564)
..+.+|..+..+|..|++.+
T Consensus 320 ~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 320 PDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCchHHHHHHHHHHHHHhhh
Confidence 99999999999999998755
No 105
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.79 E-value=4e-05 Score=52.37 Aligned_cols=41 Identities=39% Similarity=0.511 Sum_probs=38.2
Q ss_pred ChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 008465 452 HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 452 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
+++++..+++.|+++.|+.+|+++++.+++.|+++|.|||.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999974
No 106
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0021 Score=62.97 Aligned_cols=293 Identities=13% Similarity=0.101 Sum_probs=195.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHH--HHhhCCCCHHHHHHHHHHHHhcc-cCCc
Q 008465 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLL--VGLLSTPDSRTQEHAVTALLNLS-ICED 331 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~L--v~lL~~~~~~i~~~A~~~L~nLs-~~~~ 331 (564)
..+..+.++..+-..|.++-..|...|..++. .+..-..+.+......+ .++-..-+.-.|...+..+..+. ..++
T Consensus 126 NaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 126 NAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 45777888888888899999999999999986 66666677776655443 23333334455666676676664 3444
Q ss_pred cchhhhccCChHHHHHHHhcC-CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccC--CHHHHHHH----HHH
Q 008465 332 NKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG--TQRGKKDA----ATA 404 (564)
Q Consensus 332 ~~~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a----~~a 404 (564)
.-...-..|.+..+..-|+.. +.-++.++......|+..+..+..+.+.|.|+.+..++... ++--+-.+ ...
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 555555788888888777653 56678888999999999899999999999999999998643 23222223 334
Q ss_pred HHHhhcccChhHHHHHc--CChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCC--hHHHHHHHhcCC-hHH
Q 008465 405 LFNLCIYQGNKGKAVRA--GVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEA--VPVLVEVIGNGS-PRN 479 (564)
Q Consensus 405 L~nL~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~--i~~Lv~lL~~~~-~~~ 479 (564)
+.++...+-....+++. -+|....+++...++..++.|+.+++.|.++-+|.+.+..+|- ...++--..+.+ ..-
T Consensus 285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahak 364 (524)
T KOG4413|consen 285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAK 364 (524)
T ss_pred hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccch
Confidence 44444444333333332 3455566777778899999999999999999999999988864 344443333333 233
Q ss_pred HHHHHHHHHHHhcC---CHHH------H---H-HHHH-------cCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHH
Q 008465 480 RENAAAVLVHLCAG---DQQY------L---A-EAKE-------LGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQ 539 (564)
Q Consensus 480 k~~A~~~L~~L~~~---~~~~------~---~-~~~~-------~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~ 539 (564)
++.+..+|.+++.. .+.. . . .+.+ ..-......+++.+.++++-.|...+..+....=-.
T Consensus 365 qeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWal 444 (524)
T KOG4413|consen 365 QEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWAL 444 (524)
T ss_pred HHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHH
Confidence 56667777777642 1111 0 1 1111 122455666777778999888888888888766556
Q ss_pred HHHhhchhh
Q 008465 540 KQAQVQTES 548 (564)
Q Consensus 540 ~~~~~~~~~ 548 (564)
+..+...+.
T Consensus 445 keifakeef 453 (524)
T KOG4413|consen 445 KEIFAKEEF 453 (524)
T ss_pred HHHhcCccc
Confidence 665555443
No 107
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00049 Score=73.01 Aligned_cols=265 Identities=15% Similarity=0.136 Sum_probs=171.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHH-hCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccch
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAE-AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
...++.++++.+++++.++..|+.++....--.. ...+.. ..++..|..+-.++++++|.+.+.+|..|..... .
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~--d 248 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP--D 248 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH--H
Confidence 3678999999999999999999999887653222 222222 2467777888888899999999999988864322 2
Q ss_pred hhh--ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhc--CChHHHHHhhccCCH---------------
Q 008465 335 SIV--SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS--GAIPPLVTLLSEGTQ--------------- 395 (564)
Q Consensus 335 ~i~--~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~--------------- 395 (564)
+++ -.++++-++..-+..+.++.-.|+.....++..+-.+..+... ..+|.|+.-+...+.
T Consensus 249 kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vp 328 (885)
T KOG2023|consen 249 KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVP 328 (885)
T ss_pred hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCC
Confidence 333 2566777777777778889999999999999887666555443 667777654432110
Q ss_pred -----------------------------------------HHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHh----
Q 008465 396 -----------------------------------------RGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHL---- 430 (564)
Q Consensus 396 -----------------------------------------~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~l---- 430 (564)
..++-.+.+|--|+. +....+++.++++
T Consensus 329 DreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~ 401 (885)
T KOG2023|consen 329 DREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEH 401 (885)
T ss_pred chhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHH
Confidence 112222222222221 2233445555555
Q ss_pred ccCCCcchHHHHHHHHHHhcCChhhHHHHHhc--CChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCH
Q 008465 431 LTEPGGGMVDEALAILAILSSHPEGKAAIGAA--EAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ-YLAEAKELGVM 507 (564)
Q Consensus 431 L~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~-~~~~~~~~g~i 507 (564)
|.+.+..+++.++-+|+.++..- -.-++.. ..+|.|+.+|.+..+-+|.-++|+|...+..-.. ..+.... .++
T Consensus 402 L~~~~W~vrEagvLAlGAIAEGc--M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL 478 (885)
T KOG2023|consen 402 LSSEEWKVREAGVLALGAIAEGC--MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVL 478 (885)
T ss_pred cCcchhhhhhhhHHHHHHHHHHH--hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHH
Confidence 44566778888888888777432 1122221 2688889999999999999999999776532110 0111111 144
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 508 GPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 508 ~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
..|..-+-+++.++++.|+.+...+-+
T Consensus 479 ~~ll~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 479 EGLLRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 556666678899999999998877764
No 108
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.73 E-value=2.5e-05 Score=81.26 Aligned_cols=67 Identities=27% Similarity=0.607 Sum_probs=55.3
Q ss_pred CCCCCccCcccccCCCCCEE-cCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCc-hHHHHHHHHHH
Q 008465 160 VIPDDFRCPISLELMKDPVI-VSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTP-NYVLRSLIAQW 227 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~-n~~l~~~i~~~ 227 (564)
.+.+++.||+|..++.||+. +.|||.||+.|+..|... +..||.|+..+......+ ....+..+..|
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 46788999999999999999 599999999999999996 889999988887665554 44555555554
No 109
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.72 E-value=0.00032 Score=67.90 Aligned_cols=183 Identities=19% Similarity=0.130 Sum_probs=117.8
Q ss_pred HccCCHHHHHHHHHHHHHHHhhC--hhhHHHHHHh--CCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCC
Q 008465 266 LTSGSPEDQRSAAGEIRLLAKRN--ADNRVAIAEA--GAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGA 341 (564)
Q Consensus 266 L~s~~~~~~~~al~~L~~L~~~~--~~~r~~i~~~--g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~ 341 (564)
-.+.+|+.+..|+..|+.+..++ ......+.+. .+++.++..+.+....+...|+.++..++..-...-.-.-...
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 35689999999999999999877 3333333332 5677888888887888999999999999764433222223557
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccC-hhHHH--
Q 008465 342 VPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG-NKGKA-- 418 (564)
Q Consensus 342 i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~~~~i-- 418 (564)
++.|+..+.++..-+++.|..+|..+...-.+...+ .++.+...+.+.++.++..++..|..+..... ....+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 888888888888889999999999987654311111 15666677788899999999999988766544 11111
Q ss_pred --HHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC
Q 008465 419 --VRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH 452 (564)
Q Consensus 419 --~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 452 (564)
.-..+++.+...+.+.++++++.|-.++..+...
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 1145788889999999999999999999988543
No 110
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.00026 Score=73.37 Aligned_cols=261 Identities=13% Similarity=0.094 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCc-cchhhhccCChHHHHHHHhc
Q 008465 273 DQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED-NKGSIVSSGAVPSIVHVLRI 351 (564)
Q Consensus 273 ~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~lL~~ 351 (564)
.-..++..|..+++.-..-|..+.++.+++.|+++|+.++..+..-+...++|+...-. -+..+...|++..++.++.+
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 34445667777887666778888999999999999999887777778888999866444 48888899999999999998
Q ss_pred CCHHHHHHHHHHHHhccCCcch--hhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccC----hhHHHHHc----
Q 008465 352 GSMEARENAAATLFSLSVIDEN--KVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG----NKGKAVRA---- 421 (564)
Q Consensus 352 ~~~e~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~----~~~~i~~~---- 421 (564)
.+..++.+..|.|.++..+..+ +-+....-++..++++..+++-.++...+..|.|+..+.. .+..+++.
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ 564 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR 564 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence 8889999999999999988654 3345566778999999999989999999999999876322 12212211
Q ss_pred CChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHh--cCChHHHHHHHhc---------CC--------------
Q 008465 422 GVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGA--AEAVPVLVEVIGN---------GS-------------- 476 (564)
Q Consensus 422 g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~---------~~-------------- 476 (564)
-....|++.+...++-.....+.+|.+++..++....++. ...+..+.++|.. |+
T Consensus 565 ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v 644 (743)
T COG5369 565 YLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV 644 (743)
T ss_pred HHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence 2455667777666776667778888888766655443332 1233333333311 00
Q ss_pred ------------------------------hHHHHHHHHHHHHHhc---------CCHHHHHHHHHcCCHHHHHHhhhcC
Q 008465 477 ------------------------------PRNRENAAAVLVHLCA---------GDQQYLAEAKELGVMGPLVDLAQNG 517 (564)
Q Consensus 477 ------------------------------~~~k~~A~~~L~~L~~---------~~~~~~~~~~~~g~i~~L~~Ll~~~ 517 (564)
.++-....|++.|+.. .+.+.++.+...|+-+.|..+..+.
T Consensus 645 ~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~ 724 (743)
T COG5369 645 NLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKD 724 (743)
T ss_pred cccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccC
Confidence 0011122233333221 1114556667788888888888888
Q ss_pred CHHHHHHHHHHHHHHH
Q 008465 518 TDRGKRKAAQLLERMS 533 (564)
Q Consensus 518 ~~~~k~~A~~lL~~l~ 533 (564)
++-+++++..+|.++.
T Consensus 725 Sl~vrek~~taL~~l~ 740 (743)
T COG5369 725 SLIVREKIGTALENLR 740 (743)
T ss_pred cHHHHHHHHHHHHhhh
Confidence 9999999999998875
No 111
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.002 Score=67.45 Aligned_cols=274 Identities=14% Similarity=0.126 Sum_probs=184.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHH-hCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccch
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAE-AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
.+.++-|-+.+...++..+.-.+.=|..|-. ......+.- ..+.+.|+.+|++++.+++..+=.+|.++-..-.++.
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds--~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDS--VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhc--CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 3566666666666777777777776766642 222222221 2467788889999999999777776766643323333
Q ss_pred hhh-ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHH-HHHHHHH---HHHHhh
Q 008465 335 SIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQR-GKKDAAT---ALFNLC 409 (564)
Q Consensus 335 ~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~a~~---aL~nL~ 409 (564)
..+ -...++.++.-+.++.++++..|..-+..+..-........-+|++..++..+.+..+. ++..+.. .|..++
T Consensus 244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 332 24567788888888999999999887777766555555555568888888888776553 3332222 244444
Q ss_pred cccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHH
Q 008465 410 IYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 489 (564)
Q Consensus 410 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~ 489 (564)
.....+..+--..++..|.+.|.+...+.+-.++.-+..|-....+..........+.|+.-|.+.++.+...+..+|.+
T Consensus 324 s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 324 SSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred hhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 44444433223357778888888888888888888888776666666666666788999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 008465 490 LCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 490 L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 535 (564)
+|...... .. -.++..|+++....+.-.+..+.-+++.|+-.
T Consensus 404 i~~s~~~~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 404 ICSSSNSP-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HhcCcccc-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 99865332 00 12445566666666666777777788777653
No 112
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.67 E-value=0.0044 Score=64.96 Aligned_cols=152 Identities=25% Similarity=0.180 Sum_probs=117.5
Q ss_pred CCHHHHHHhhC-CCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHh
Q 008465 299 GAIPLLVGLLS-TPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTI 377 (564)
Q Consensus 299 g~i~~Lv~lL~-~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i 377 (564)
.+++.|+..|. .++.++...++.+|... + ...++..++..|.+.++.++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i---------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--E--------DALDLRSVLAVLQAGPEGLCAGIQAALGWL---------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--C--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence 36788999995 56677766555554322 1 112389999999999988999999988754
Q ss_pred hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHH
Q 008465 378 GASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKA 457 (564)
Q Consensus 378 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~ 457 (564)
...+..+.|+.++++.++.++..++.++... .....+.+..+|.+.++.++..|+.+|+.+...
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----- 177 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPRR----- 177 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----
Confidence 3456788999999999999999888777751 123456889999999999999999999987643
Q ss_pred HHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 008465 458 AIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 458 ~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~ 491 (564)
..++.|...+.+.++.+|..|+..|..+.
T Consensus 178 -----~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 178 -----LSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred -----cchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 46777888899999999999998887663
No 113
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.01 Score=60.57 Aligned_cols=238 Identities=17% Similarity=0.160 Sum_probs=172.2
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-----hh----hHHHHHHhCCHHHHHHhhCCCC------HHHHHHH
Q 008465 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-----AD----NRVAIAEAGAIPLLVGLLSTPD------SRTQEHA 319 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~-----~~----~r~~i~~~g~i~~Lv~lL~~~~------~~i~~~A 319 (564)
+..+++.|+++|.+.|.++....+.-|..|+..+ .+ --..+++.++++.|+.-+..=| ..-..++
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 4567899999999999999999999999887532 22 1335567789999998886533 2344667
Q ss_pred HHHHHhccc-CCccchhhhccCChHHHHHHHhcC--CHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhc----
Q 008465 320 VTALLNLSI-CEDNKGSIVSSGAVPSIVHVLRIG--SMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLS---- 391 (564)
Q Consensus 320 ~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~---- 391 (564)
+.++-|+.. ++.....+++.|.+..|+.-+... -..-+..|..+|.-+-.++ +++...+..+++..+++-+.
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 788888865 445577777888887777755433 2334667888887777665 58888888899999988774
Q ss_pred -c---C-CHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhh---HHHHHhcC
Q 008465 392 -E---G-TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEG---KAAIGAAE 463 (564)
Q Consensus 392 -~---~-~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~---~~~i~~~g 463 (564)
+ . ..+..++-..+|+.+...+.|+..++...+++...-+++. ....+..++++|-....++++ ...+++..
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 1 1 2456788888999999999999999998888877666665 445577899999988877764 45667777
Q ss_pred ChHHHHHHHh-cC--------C-hHHHHHHHHHHHHHhcC
Q 008465 464 AVPVLVEVIG-NG--------S-PRNRENAAAVLVHLCAG 493 (564)
Q Consensus 464 ~i~~Lv~lL~-~~--------~-~~~k~~A~~~L~~L~~~ 493 (564)
++..++.+.. .+ + ...-++.+.+|+.+-.+
T Consensus 362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 7777766543 22 2 33456777777776553
No 114
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.64 E-value=0.0002 Score=57.86 Aligned_cols=86 Identities=33% Similarity=0.465 Sum_probs=71.1
Q ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhh
Q 008465 301 IPLLVGLL-STPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGA 379 (564)
Q Consensus 301 i~~Lv~lL-~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~ 379 (564)
||.|++.| +++++.++..|+.+|+.+- ...+++.|+++++++++.++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 68899988 8889999999999998552 2355899999999999999999999999882 3
Q ss_pred cCChHHHHHhhccC-CHHHHHHHHHHHH
Q 008465 380 SGAIPPLVTLLSEG-TQRGKKDAATALF 406 (564)
Q Consensus 380 ~g~i~~Lv~lL~~~-~~~~~~~a~~aL~ 406 (564)
..+++.|.+++.++ +..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45899999999876 4566888888874
No 115
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=3.7e-05 Score=78.90 Aligned_cols=72 Identities=22% Similarity=0.514 Sum_probs=59.0
Q ss_pred CCCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCC-----CCchHHHHHHHHHHHHH
Q 008465 158 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTA-----VTPNYVLRSLIAQWCEA 230 (564)
Q Consensus 158 ~~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~-----l~~n~~l~~~i~~~~~~ 230 (564)
+..++.+|.|-||...+.+||+++|||+||..||.+.++ ....||.|+..+.... ..+|+....+|..++..
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 345688999999999999999999999999999999777 5678999999887432 23467777888877765
No 116
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.008 Score=64.00 Aligned_cols=271 Identities=17% Similarity=0.146 Sum_probs=179.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHH-HHHHHHhcccCCccch
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEH-AVTALLNLSICEDNKG 334 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~-A~~~L~nLs~~~~~~~ 334 (564)
....+.+.+.+.+.....+..+...+..+.+++ .-..+.+.+++..|...+.+.....+.. +.-+.-..... -.
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~---Lg 207 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGN---LG 207 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHh---cC
Confidence 356677778888888889999999999888643 3446677789999999998865555443 22111111111 11
Q ss_pred hhhccCChHHHHHHHhc---CCHHHHHHHHHHHHhccCC-cchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 008465 335 SIVSSGAVPSIVHVLRI---GSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI 410 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~---~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 410 (564)
...+.+.++.+-.+|.+ ....+|..|..+...+... +.+.. .-.+|.++.-+.+..=+.+..++..|..+..
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33355666666666643 3567777666655544322 22111 1234555555544445678899999999998
Q ss_pred ccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhH-----------------------------HHH--
Q 008465 411 YQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK-----------------------------AAI-- 459 (564)
Q Consensus 411 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~-----------------------------~~i-- 459 (564)
..+..-...-..+||.+.+.|.+..+++++.+..+|..++...++- ..+
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~ 363 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVA 363 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence 8887777888899999999999999999999999998887522211 011
Q ss_pred -HhcCChHHHHHHHhcC----ChHHHHHHHHHHHHHhcCC--HHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 008465 460 -GAAEAVPVLVEVIGNG----SPRNRENAAAVLVHLCAGD--QQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERM 532 (564)
Q Consensus 460 -~~~g~i~~Lv~lL~~~----~~~~k~~A~~~L~~L~~~~--~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l 532 (564)
++.-.+..++.+|+.+ +...+..++.++.|+|.-- +......+. -++|.|...+.+..|++|.-|..+|..+
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 1123455666666553 4567889999999999754 444433333 3777888888888899999999999665
Q ss_pred HhhH
Q 008465 533 SRFI 536 (564)
Q Consensus 533 ~~~~ 536 (564)
.+.-
T Consensus 443 ~e~~ 446 (569)
T KOG1242|consen 443 LERL 446 (569)
T ss_pred HHHH
Confidence 5543
No 117
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.50 E-value=0.0057 Score=62.86 Aligned_cols=186 Identities=28% Similarity=0.321 Sum_probs=132.6
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhh
Q 008465 299 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIG 378 (564)
Q Consensus 299 g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~ 378 (564)
..++.++.++.+++..++..|...+..+. ...+++.+..+|.+.++.+|..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELG---------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------
Confidence 46789999999999999999998865543 3557899999999999999999999776663
Q ss_pred hcCChHHHHHhhc-cCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcc------------hHHHHHHH
Q 008465 379 ASGAIPPLVTLLS-EGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGG------------MVDEALAI 445 (564)
Q Consensus 379 ~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~------------~~~~al~~ 445 (564)
....++.|+.++. +++..++..++.+|+.+-.. .++..++..+.+.... ++..+...
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 3457899999998 58899999999999977442 3367777777664422 22223332
Q ss_pred HHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHH
Q 008465 446 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKA 525 (564)
Q Consensus 446 L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A 525 (564)
|..+ .+...++.+.+++...+..++..|+.+|..+...+ ..+.+.+...+.+++..++..+
T Consensus 173 l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 173 LGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHH
Confidence 2222 22347889999999988999999999999988764 2233445555555555555555
Q ss_pred HHHHHHHH
Q 008465 526 AQLLERMS 533 (564)
Q Consensus 526 ~~lL~~l~ 533 (564)
...|..+.
T Consensus 234 ~~~l~~~~ 241 (335)
T COG1413 234 LLALGEIG 241 (335)
T ss_pred HHHhcccC
Confidence 55544443
No 118
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.50 E-value=0.016 Score=61.86 Aligned_cols=243 Identities=20% Similarity=0.219 Sum_probs=161.9
Q ss_pred hhhHHHHHHHHH----------ccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC-----CHHHHHHH
Q 008465 255 ERTKIEILLCKL----------TSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP-----DSRTQEHA 319 (564)
Q Consensus 255 ~~~~i~~Lv~~L----------~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-----~~~i~~~A 319 (564)
....+..|++.- ...++.+..+|+++|.|+...++..|..+.+.|+.+.++..|+.. +.++....
T Consensus 20 ~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~ 99 (446)
T PF10165_consen 20 TEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLD 99 (446)
T ss_pred cHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHH
Confidence 345566666554 245788999999999999999999999999999999999999876 67888888
Q ss_pred HHHHHhccc-CCccchhhh-ccCChHHHHHHHhc-----------------CCHHHHHHHHHHHHhccCCcchhhHhhhc
Q 008465 320 VTALLNLSI-CEDNKGSIV-SSGAVPSIVHVLRI-----------------GSMEARENAAATLFSLSVIDENKVTIGAS 380 (564)
Q Consensus 320 ~~~L~nLs~-~~~~~~~i~-~~g~i~~Lv~lL~~-----------------~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~ 380 (564)
.++|.-++- ....+..++ +.+++..|+..|.. ...++...++.++||+.........-...
T Consensus 100 ~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~ 179 (446)
T PF10165_consen 100 SRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFS 179 (446)
T ss_pred HHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhh
Confidence 888887754 445566666 56888888887732 12345667788999997664433221223
Q ss_pred CChHHHHHhhcc---------CCHHHHHHHHHHHHHhhcccChh--------H----HHHHcCChHHHHHhccC-----C
Q 008465 381 GAIPPLVTLLSE---------GTQRGKKDAATALFNLCIYQGNK--------G----KAVRAGVVPTLMHLLTE-----P 434 (564)
Q Consensus 381 g~i~~Lv~lL~~---------~~~~~~~~a~~aL~nL~~~~~~~--------~----~i~~~g~i~~Lv~lL~~-----~ 434 (564)
..++.|+.++.. ........++.+|.|+-...... . .......+..|+.+|.. .
T Consensus 180 ~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~ 259 (446)
T PF10165_consen 180 PSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYE 259 (446)
T ss_pred HHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcC
Confidence 455555555431 13456778888888873211100 0 01122356667777643 1
Q ss_pred C---cchHHHHHHHHHHhcCCh-hhHHHHHh----------------cCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 008465 435 G---GGMVDEALAILAILSSHP-EGKAAIGA----------------AEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 435 ~---~~~~~~al~~L~~L~~~~-~~~~~i~~----------------~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~ 494 (564)
. .+...-.+.+|..++... ..|..+.. ...-..|++++.+..+.+|..++..|+.||..+
T Consensus 260 ~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 260 ALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred cccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 1 134555677777777653 33333321 134578999998888999999999999999866
Q ss_pred HHH
Q 008465 495 QQY 497 (564)
Q Consensus 495 ~~~ 497 (564)
...
T Consensus 340 ~~~ 342 (446)
T PF10165_consen 340 ASR 342 (446)
T ss_pred HHH
Confidence 533
No 119
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.036 Score=62.13 Aligned_cols=255 Identities=19% Similarity=0.198 Sum_probs=167.9
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhh
Q 008465 259 IEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV 337 (564)
Q Consensus 259 i~~Lv~~L~s-~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~ 337 (564)
.+-+...|.+ +++.+|.-|+..+..++. +.+.-..+++.|.+..|+.+|.+ .+..++.++.+|..|+...+--..-+
T Consensus 1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred cHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3444445543 567889999988887774 67777788999999999999977 66788999999999988777655556
Q ss_pred ccCChHHHHHHHhcC-CHHHHHHHHHHHHhccCCcc--hhhHhhhc----------------------------------
Q 008465 338 SSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDE--NKVTIGAS---------------------------------- 380 (564)
Q Consensus 338 ~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~--~~~~i~~~---------------------------------- 380 (564)
+.|++.-|..++... +++.|..|+..+..|..+.- -|..|.-.
T Consensus 1851 ~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn 1930 (2235)
T KOG1789|consen 1851 EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWN 1930 (2235)
T ss_pred hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccC
Confidence 778888887776544 57777777777777743321 11100000
Q ss_pred ------------------------------------------------------------------------CChHHHHH
Q 008465 381 ------------------------------------------------------------------------GAIPPLVT 388 (564)
Q Consensus 381 ------------------------------------------------------------------------g~i~~Lv~ 388 (564)
+.++.+.+
T Consensus 1931 ~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~le 2010 (2235)
T KOG1789|consen 1931 EVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLE 2010 (2235)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHH
Confidence 11111111
Q ss_pred hhccCCH--HHHHHHHHHHHHhhcccCh-hHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCCh
Q 008465 389 LLSEGTQ--RGKKDAATALFNLCIYQGN-KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAV 465 (564)
Q Consensus 389 lL~~~~~--~~~~~a~~aL~nL~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i 465 (564)
++...++ .....--.|+..|....++ ..++-..|.+|.++..+...+..+-..|+.+|..|+.+.-+..++....++
T Consensus 2011 lm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i 2090 (2235)
T KOG1789|consen 2011 LMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCI 2090 (2235)
T ss_pred HhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccc
Confidence 2211110 0111111122222222222 223445688999988887666666688999999999999999999888888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHhhhc
Q 008465 466 PVLVEVIGNGSPRNRENAAAVLVHLCAGD-QQYLAEAKELGVMGPLVDLAQN 516 (564)
Q Consensus 466 ~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~Ll~~ 516 (564)
..++..|+.. +..---|+.+|-.+.... ++-+...++.|.++.|+.|+..
T Consensus 2091 ~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2091 DGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred hhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 8888888653 333347777887766543 4567788899999999999864
No 120
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0063 Score=65.91 Aligned_cols=272 Identities=17% Similarity=0.144 Sum_probs=176.5
Q ss_pred hHHHHHHHHHccCCH-HHHHHHHHHHHHHHhhChhhHHHHHHh-CCHHHHHHhhCC--CCHHHHHHHHHHHHhcccC---
Q 008465 257 TKIEILLCKLTSGSP-EDQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLLST--PDSRTQEHAVTALLNLSIC--- 329 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~-~~~~~al~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~--~~~~i~~~A~~~L~nLs~~--- 329 (564)
+.+..|+.......+ ..+..++.+|..++.+-.. ....... .++..++.-... ++..+|..|..+|.|--..
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~i~p-evl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDP-EVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCH-HHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 344455555544433 4778889999999964332 2222222 455666654443 4778999999999986421
Q ss_pred ----CccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCHHHHHHHHHH
Q 008465 330 ----EDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATA 404 (564)
Q Consensus 330 ----~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 404 (564)
+.+|..| +..+++.-.+++.+++..|..+|..+.... ++-........+..-+.-+++.++++...++..
T Consensus 208 nF~~E~ern~i-----MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEF 282 (859)
T KOG1241|consen 208 NFNNEMERNYI-----MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEF 282 (859)
T ss_pred hhccHhhhcee-----eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1223333 444555556778899999999998887653 333333444566666777888899999888887
Q ss_pred HHHhhcccCh-----------------hHHH--HHcCChHHHHHhccC-------CCcchHHHHHHHHHHhcCChhhHHH
Q 008465 405 LFNLCIYQGN-----------------KGKA--VRAGVVPTLMHLLTE-------PGGGMVDEALAILAILSSHPEGKAA 458 (564)
Q Consensus 405 L~nL~~~~~~-----------------~~~i--~~~g~i~~Lv~lL~~-------~~~~~~~~al~~L~~L~~~~~~~~~ 458 (564)
=.++|...-. +... .-.+++|.|+++|.. ++......|-.+|..++..-. ..
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~--D~ 360 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG--DD 360 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc--cc
Confidence 7777753211 1111 123678888888854 123455566556655543210 11
Q ss_pred HHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHH
Q 008465 459 IGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIE 537 (564)
Q Consensus 459 i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~ 537 (564)
|+. -++|.+-+-+++++-+-++.|+.++..+-.+....+..-+..++++.++.++.++.-.+++.+.|.|..+.+.-.
T Consensus 361 Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 361 IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 222 234444444556778889999999999888776666666677899999999999999999999999998887654
No 121
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.41 E-value=0.00055 Score=55.24 Aligned_cols=86 Identities=27% Similarity=0.390 Sum_probs=69.4
Q ss_pred hHHHHHHH-hcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHH
Q 008465 342 VPSIVHVL-RIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVR 420 (564)
Q Consensus 342 i~~Lv~lL-~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~ 420 (564)
|+.|++.| +++++.+|..++.+|..+- ...+++.|+.+++++++.++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57889989 7779999999999999552 2246899999999999999999999999872 3
Q ss_pred cCChHHHHHhccCCC-cchHHHHHHHHH
Q 008465 421 AGVVPTLMHLLTEPG-GGMVDEALAILA 447 (564)
Q Consensus 421 ~g~i~~Lv~lL~~~~-~~~~~~al~~L~ 447 (564)
..+++.|.+++.+++ ..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 458899999997744 456788888774
No 122
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.011 Score=63.70 Aligned_cols=252 Identities=18% Similarity=0.205 Sum_probs=159.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC-CHHHHHHHHHHHHhcccCCc-cch
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP-DSRTQEHAVTALLNLSICED-NKG 334 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~i~~~A~~~L~nLs~~~~-~~~ 334 (564)
...+.|++.|..+|+.++..|+..+..|++.+|.|.-.+ -|.+.++|.+. +.-+....+...++|+--++ -..
T Consensus 181 ~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK 255 (877)
T KOG1059|consen 181 PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK 255 (877)
T ss_pred hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh
Confidence 457889999999999999999999999999898876554 38888888653 44455566777777765432 222
Q ss_pred hhhccCChHHHHHHHhcCC-HHHHHHHHHHHHhc--cCCc-chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 008465 335 SIVSSGAVPSIVHVLRIGS-MEARENAAATLFSL--SVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI 410 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~~-~e~~~~a~~~L~~L--s~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 410 (564)
..+++|.+++.+.. ..+...++.++..- +... ++-..+ .-++..|--++.+.|+..+..++-|+..+..
T Consensus 256 -----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 256 -----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred -----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 34789999998874 55666666555433 3221 211111 1246667777788899999999999998876
Q ss_pred ccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCC-hHHHHHHHHHHHH
Q 008465 411 YQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS-PRNRENAAAVLVH 489 (564)
Q Consensus 411 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~k~~A~~~L~~ 489 (564)
.+.-- +. ..-..++.+|.+.+..++-.|+..|.-+.... +..+ .+..|+..+...+ ...|..-+.-+..
T Consensus 329 tHp~~---Vq-a~kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~e-----IVk~LM~~~~~ae~t~yrdell~~II~ 398 (877)
T KOG1059|consen 329 THPKA---VQ-AHKDLILRCLDDKDESIRLRALDLLYGMVSKK-NLME-----IVKTLMKHVEKAEGTNYRDELLTRIIS 398 (877)
T ss_pred hCHHH---HH-HhHHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHH-----HHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 54432 21 22345788899999999999999999887643 2223 3445655554333 3566666666667
Q ss_pred HhcCCHHHHHHHHHc-CCHHHHHHhhhc-CCHHHHHHHHHHHHHH
Q 008465 490 LCAGDQQYLAEAKEL-GVMGPLVDLAQN-GTDRGKRKAAQLLERM 532 (564)
Q Consensus 490 L~~~~~~~~~~~~~~-g~i~~L~~Ll~~-~~~~~k~~A~~lL~~l 532 (564)
+|+.+. -..+.+- =.+..|++|.+- |+.++...|..++-..
T Consensus 399 iCS~sn--Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~ 441 (877)
T KOG1059|consen 399 ICSQSN--YQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVA 441 (877)
T ss_pred Hhhhhh--hhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHh
Confidence 776542 1111111 124555555543 2444444444444433
No 123
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.40 E-value=6.5e-05 Score=67.39 Aligned_cols=45 Identities=18% Similarity=0.376 Sum_probs=39.8
Q ss_pred ccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 165 FRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 165 f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
|.|-||..-+..||++.|||.||..|..+-++. ..+|-.|+....
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence 999999999999999999999999999887774 567999987543
No 124
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=7.4e-05 Score=71.83 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=44.0
Q ss_pred ccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 008465 165 FRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTA 213 (564)
Q Consensus 165 f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 213 (564)
-.|+||+..+.-||.++|+|.||.-||..-...+..+|++|+.++++.-
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 4699999999999999999999999999877767889999999997543
No 125
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.0027 Score=66.07 Aligned_cols=195 Identities=13% Similarity=0.081 Sum_probs=142.7
Q ss_pred HHHHHhcccCC-ccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCC-cchhhHhhhcCChHHHHHhhccCCHHH
Q 008465 320 VTALLNLSICE-DNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSEGTQRG 397 (564)
Q Consensus 320 ~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 397 (564)
+..|..++..- --|.-+.+..+.+++++.|..+...+.-.+...++|+... +.-+..+.+.|+|..|+.++.+.+...
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaL 489 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDAL 489 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhh
Confidence 33444444322 2377777899999999999987655566666777777644 567888889999999999999999999
Q ss_pred HHHHHHHHHHhhcccChhH--HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCCh----hhHHHHHhc----CChHH
Q 008465 398 KKDAATALFNLCIYQGNKG--KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP----EGKAAIGAA----EAVPV 467 (564)
Q Consensus 398 ~~~a~~aL~nL~~~~~~~~--~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~----~~~~~i~~~----g~i~~ 467 (564)
+....|.|.++..+..+-. +++..-++..++.+..++...+++.++.+|.|+..+. +.+..++.. -....
T Consensus 490 qans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~ 569 (743)
T COG5369 490 QANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKR 569 (743)
T ss_pred hhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHH
Confidence 9999999999998866543 5677788999999999999999999999999997532 223323222 13456
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHhh
Q 008465 468 LVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKEL-GVMGPLVDLA 514 (564)
Q Consensus 468 Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~-g~i~~L~~Ll 514 (564)
|++.++..+|-..+..+.+|.+++..++.....+.+. ..+..+.+++
T Consensus 570 l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 570 LIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 7777788888877788899999888776555555432 3333443433
No 126
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00011 Score=70.63 Aligned_cols=50 Identities=22% Similarity=0.439 Sum_probs=42.9
Q ss_pred CCCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 158 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 158 ~~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.+.+| |.|-||.+.+.+||+..|||+||..|-.+.++. ...|++|++...
T Consensus 237 ~~~~P--f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 237 IELLP--FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH 286 (313)
T ss_pred cccCC--ccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc
Confidence 34455 999999999999999999999999999888874 466999988764
No 127
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.0024 Score=68.02 Aligned_cols=217 Identities=18% Similarity=0.140 Sum_probs=144.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHH---hccc---CCc
Q 008465 258 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALL---NLSI---CED 331 (564)
Q Consensus 258 ~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~---nLs~---~~~ 331 (564)
.+.-|.......+..++..|+..|..|..+..-.+.+ ....++++++.+..+|..|+..+. |... ..+
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~------Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKAC------YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHH------HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 3344888888899999999999999888644333322 356788999999999988865554 4431 111
Q ss_pred cchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc----------------------------------------
Q 008465 332 NKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID---------------------------------------- 371 (564)
Q Consensus 332 ~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~---------------------------------------- 371 (564)
+-+.=....++..+.+.+...+..+|..|+.+|..+-..+
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 1111112345666667776666665555555554331111
Q ss_pred -----------chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHH
Q 008465 372 -----------ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVD 440 (564)
Q Consensus 372 -----------~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 440 (564)
+.-..|..+|+--.++.-|.++--++++.|+..++.|+.....-. ..++..|+++|.+....++.
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHHHHHH
Confidence 011134455666667777766667899999999999998765432 14677899999888888999
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHH
Q 008465 441 EALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 489 (564)
Q Consensus 441 ~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~ 489 (564)
.|+.+|..++.+-. +++.-++.+++.|.+.++++|+..-.+|.+
T Consensus 429 ~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 429 KAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998887632 233456777888888888888877666654
No 128
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.29 E-value=0.00057 Score=46.31 Aligned_cols=39 Identities=38% Similarity=0.562 Sum_probs=36.2
Q ss_pred hhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcc
Q 008465 289 ADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 327 (564)
Q Consensus 289 ~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs 327 (564)
++++..+.+.|+++.|+.+|++++.+++..|+++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457888999999999999999999999999999999987
No 129
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.27 E-value=0.00028 Score=55.43 Aligned_cols=46 Identities=26% Similarity=0.525 Sum_probs=35.1
Q ss_pred ccCcccccCCCC-CEEc-CCCCcccHHHHHHHHHh--CCCCCCCCCCCCc
Q 008465 165 FRCPISLELMKD-PVIV-STGQTYERSCIEKWLEA--GHRTCPKTQQTLT 210 (564)
Q Consensus 165 f~Cpic~~lm~d-Pv~~-~cg~t~~r~ci~~~~~~--~~~~CP~~~~~l~ 210 (564)
-.||.|...-.+ |++. .|+|.|...||.+|++. +..+||.||++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 346666655444 5554 89999999999999984 4579999999764
No 130
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0023 Score=67.41 Aligned_cols=72 Identities=35% Similarity=0.493 Sum_probs=64.9
Q ss_pred CCCCCCccCcccccCCCCCEEcC-CCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHHc
Q 008465 159 PVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEAN 231 (564)
Q Consensus 159 ~~~p~~f~Cpic~~lm~dPv~~~-cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 231 (564)
.++|++|.-|+....|+|||.++ ++-+.+|+-|..++- ...+.|..|.|++..+++||..+|.-|..+....
T Consensus 849 GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahll-sd~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 849 GDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLL-SDGTDPFNRMPLTLDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred cCCchhhhCchhhhcccCCeecccccccccHHHHHHHHh-cCCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence 37899999999999999999985 689999999999887 5778999999999999999999999999886543
No 131
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.031 Score=60.81 Aligned_cols=291 Identities=11% Similarity=0.094 Sum_probs=176.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhh
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 336 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i 336 (564)
..++++-+.++++||..+..|+..+..+-.+....+..-...+++|.++.++.++..-++..+.|.|+.++..-. +.+
T Consensus 364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~ 441 (859)
T KOG1241|consen 364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAI 441 (859)
T ss_pred hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhc
Confidence 345555567889999999999999999887777777777788999999999998888888999999999976433 233
Q ss_pred hc----cCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc--chhhH----hhhcCChHHHHHhh-c-----cC-CHHHHH
Q 008465 337 VS----SGAVPSIVHVLRIGSMEARENAAATLFSLSVID--ENKVT----IGASGAIPPLVTLL-S-----EG-TQRGKK 399 (564)
Q Consensus 337 ~~----~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~--~~~~~----i~~~g~i~~Lv~lL-~-----~~-~~~~~~ 399 (564)
.. .+.++.++.-|. +.|.+..+++|++.+|+..- ..... ... ...+.++.-| + ++ ....|.
T Consensus 442 ~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~ 519 (859)
T KOG1241|consen 442 INQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRS 519 (859)
T ss_pred ccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHH
Confidence 32 333444444443 35788899999999998331 11111 111 2333333322 2 11 346788
Q ss_pred HHHHHHHHhhcccChhHHHHHcCChHHHHH---------hccCCC----cchHHHHHHHHHHhcCC-hhhHHHHHhcCCh
Q 008465 400 DAATALFNLCIYQGNKGKAVRAGVVPTLMH---------LLTEPG----GGMVDEALAILAILSSH-PEGKAAIGAAEAV 465 (564)
Q Consensus 400 ~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~---------lL~~~~----~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i 465 (564)
.|-.||..|..+...-..-.-.+....++. .+...+ .+++..-+.+|..+-.. ...+..+.+ ..+
T Consensus 520 AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM 598 (859)
T KOG1241|consen 520 AAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIM 598 (859)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHH
Confidence 888899988876554332222222222222 222211 24455556666654321 122223332 356
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhc-CCHHHHHHHHHHHHHHHhhHHHHHHH
Q 008465 466 PVLVEVIGN-GSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLERMSRFIEQQKQA 542 (564)
Q Consensus 466 ~~Lv~lL~~-~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~Ll~~-~~~~~k~~A~~lL~~l~~~~~~~~~~ 542 (564)
..+++++.+ ++..+.+.|..++..+...-+ .+.+.+ ..+.|.|..=+++ .+..+.-.|..+..-|.+.-+..-..
T Consensus 599 ~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~p 676 (859)
T KOG1241|consen 599 GLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILP 676 (859)
T ss_pred HHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 777888877 455667777777766654322 333333 2256666666644 36667888888888888877766666
Q ss_pred hhchhhHHHHHh
Q 008465 543 QVQTESQSQIQE 554 (564)
Q Consensus 543 ~~~~~~~~~~~~ 554 (564)
..+.--...+|+
T Consensus 677 y~d~~mt~Lvq~ 688 (859)
T KOG1241|consen 677 YCDELMTVLVQC 688 (859)
T ss_pred HHHHHHHHHHHH
Confidence 665444444443
No 132
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.19 E-value=0.014 Score=61.41 Aligned_cols=264 Identities=16% Similarity=0.095 Sum_probs=132.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccc----
Q 008465 258 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK---- 333 (564)
Q Consensus 258 ~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~---- 333 (564)
..++|-..|++.-..++.++++.+..++.++... .+. .-.|..|-.+|++.....|..|+++|-.|+...+.+
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~--~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEENVGS--QFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCH--HHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 3444455555556778899999998887655111 111 235677888999999999999999999998643322
Q ss_pred ----hhhh-c-cC--ChHHHHHHHhcCCHHHHHHHHHHHHhccCC--cchhhHhhhcCChHHHHHhhccCCHHHHHHHHH
Q 008465 334 ----GSIV-S-SG--AVPSIVHVLRIGSMEARENAAATLFSLSVI--DENKVTIGASGAIPPLVTLLSEGTQRGKKDAAT 403 (564)
Q Consensus 334 ----~~i~-~-~g--~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 403 (564)
+.++ + +. ..-.+..+|+.|+.+....-...+-++..+ +..+..+ ..++..|.-++ +.-+...+.
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~--ida~rsLsl~F----p~k~~s~l~ 415 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIA--IDALRSLSLLF----PSKKLSYLD 415 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEe--HHHHHHHHhhC----cHHHHHHHH
Confidence 2222 1 11 233455666666655444444444333322 1111111 11111111111 111111222
Q ss_pred HHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC---hhhHHHHH----hc--------CChHHH
Q 008465 404 ALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH---PEGKAAIG----AA--------EAVPVL 468 (564)
Q Consensus 404 aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~---~~~~~~i~----~~--------g~i~~L 468 (564)
.|.+......+ ..+ +.-+|..+..++. ..|+.++.|+..|...... ++....|. ++ ..+..+
T Consensus 416 FL~~~L~~eGg-~eF-K~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhI 492 (898)
T COG5240 416 FLGSSLLQEGG-LEF-KKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHI 492 (898)
T ss_pred HHHHHHHhccc-chH-HHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHH
Confidence 22221111000 000 0012233333332 2344455555544433221 11111111 11 123344
Q ss_pred HHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008465 469 VEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 469 v~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
..-+--.+..+|..|+.+|..++.+-... +....+...|...+.+.++++|..|..+|++|...+
T Consensus 493 yNR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 493 YNRLILENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 44333345667888888887766533211 112235567888899999999999999999998543
No 133
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00038 Score=66.16 Aligned_cols=49 Identities=24% Similarity=0.425 Sum_probs=41.5
Q ss_pred CCCccCcccccCCCCCEEc-CCCCcccHHHHHHHHH-hCCCCCCCCCCCCc
Q 008465 162 PDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLE-AGHRTCPKTQQTLT 210 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~-~~~~~CP~~~~~l~ 210 (564)
..+-.||+|++.-..|.+. +|||.||..||..-+. ...++||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4567899999999999986 6999999999998775 23589999998764
No 134
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.16 E-value=0.0079 Score=53.72 Aligned_cols=121 Identities=15% Similarity=0.142 Sum_probs=99.2
Q ss_pred hHhhhcCChHHHHHhhccCC------HHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccC--CCcchHHHHHHHH
Q 008465 375 VTIGASGAIPPLVTLLSEGT------QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE--PGGGMVDEALAIL 446 (564)
Q Consensus 375 ~~i~~~g~i~~Lv~lL~~~~------~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~al~~L 446 (564)
......+++..|++++.++. ......++.++..|..+.-.-...+...+|..++.++.. .+..+...|+.+|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 34566789999999999886 367788999999998887666778888889999998865 3578999999999
Q ss_pred HHhcCChhhHHHHHhcC-ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 008465 447 AILSSHPEGKAAIGAAE-AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 495 (564)
Q Consensus 447 ~~L~~~~~~~~~i~~~g-~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~ 495 (564)
.++..++...-..+... -++.|+..|+..++..+.+|++.+-.|....+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 99998877755554444 59999999999999999999999988876554
No 135
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.15 E-value=0.01 Score=52.98 Aligned_cols=137 Identities=13% Similarity=0.140 Sum_probs=106.7
Q ss_pred HHHHHcCChHHHHHhccCCC------cchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcC--ChHHHHHHHHHH
Q 008465 416 GKAVRAGVVPTLMHLLTEPG------GGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG--SPRNRENAAAVL 487 (564)
Q Consensus 416 ~~i~~~g~i~~Lv~lL~~~~------~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~k~~A~~~L 487 (564)
..+++.|++..|+.++.++. .++...++.++..|-++.-.-=...+...|.+++.++... ++.+...|..+|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 35788899999999997744 3677888999998888754222345556788888888754 478899999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHH-hhHHHHHHHhhchhhHHHH
Q 008465 488 VHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS-RFIEQQKQAQVQTESQSQI 552 (564)
Q Consensus 488 ~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~-~~~~~~~~~~~~~~~~~~~ 552 (564)
-++..+++.....+.++=-++.|+..++.++++++.+|..++-.|- +.++..++++.+.-...++
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~~k~~ 150 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAETLSQKQI 150 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 9999988777777777778999999999999999999999886554 5666777777765444433
No 136
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.10 E-value=0.18 Score=47.96 Aligned_cols=231 Identities=16% Similarity=0.176 Sum_probs=150.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHH-HHhCCHHHHHH-h------hCC-----CCHHHHHHHHHHH
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAI-AEAGAIPLLVG-L------LST-----PDSRTQEHAVTAL 323 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i-~~~g~i~~Lv~-l------L~~-----~~~~i~~~A~~~L 323 (564)
+.+..++-.+.++ ..+..|+.+|..--+..++-...+ ...|.+..|+. . |.. ....=..+|+..|
T Consensus 26 dk~~~~i~~l~~~--p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~Ll 103 (293)
T KOG3036|consen 26 DKAYQLILSLVSP--PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALL 103 (293)
T ss_pred cchhhHHHHhhCC--chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHH
Confidence 3466666666554 456667777765544333322222 22354444443 1 111 1223345677777
Q ss_pred HhcccCCccchhhhccCChHHHHHHHhcC-----CHHHHHHHHHHHHhccCCcc--hhhHhhhcCChHHHHHhhccCCHH
Q 008465 324 LNLSICEDNKGSIVSSGAVPSIVHVLRIG-----SMEARENAAATLFSLSVIDE--NKVTIGASGAIPPLVTLLSEGTQR 396 (564)
Q Consensus 324 ~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~e~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~ 396 (564)
--++.+++.|..+.++..---+-.+|..+ ..-+|-.+..++..|..+++ ....+...+++|..++.+..|++.
T Consensus 104 QcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSel 183 (293)
T KOG3036|consen 104 QCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSEL 183 (293)
T ss_pred HHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHH
Confidence 77899999999999887666666666543 35688899999999987764 455666789999999999999999
Q ss_pred HHHHHHHHHHHhhcccChhHHHHH--------cCChHHHHHhc-cCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 008465 397 GKKDAATALFNLCIYQGNKGKAVR--------AGVVPTLMHLL-TEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPV 467 (564)
Q Consensus 397 ~~~~a~~aL~nL~~~~~~~~~i~~--------~g~i~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~ 467 (564)
.+.-|..++..+..++.+-..+.+ .-.+..++.-| +.+++.+...++.+..+|+.++..|..+.. ++|.
T Consensus 184 SKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~--clPd 261 (293)
T KOG3036|consen 184 SKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS--CLPD 261 (293)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh--hCcc
Confidence 999999999999888876554432 12333333333 448889999999999999999988877753 1221
Q ss_pred ------HHHHHhcCChHHHHHHHHHHHHHhc
Q 008465 468 ------LVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 468 ------Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
...+|+ +++..+..-...+.|+|.
T Consensus 262 ~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 262 QLRDGTFSLLLK-DDPETKQWLQQLLKNLCT 291 (293)
T ss_pred hhccchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence 122233 345555555556666654
No 137
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00033 Score=70.11 Aligned_cols=47 Identities=26% Similarity=0.639 Sum_probs=39.9
Q ss_pred ccCcccccCCC--CCE-EcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008465 165 FRCPISLELMK--DPV-IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 165 f~Cpic~~lm~--dPv-~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
+.|.||++-+. |-+ ++||+|.|...||..|+......||+|.+....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 79999999886 444 589999999999999999765669999887653
No 138
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.04 E-value=0.0074 Score=63.82 Aligned_cols=179 Identities=18% Similarity=0.251 Sum_probs=107.2
Q ss_pred hCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCcc----chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcch
Q 008465 298 AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN----KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN 373 (564)
Q Consensus 298 ~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~----~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~ 373 (564)
.|++|.|..+|++...+++.+.+..++.++..... |+.+ .+--.|++.|++.+.++|.+|..++..+|.
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~Is~---- 759 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCISR---- 759 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhHHh----
Confidence 48899999999999999999999999999875432 2322 123357888999999999999999998873
Q ss_pred hhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcC---ChHHHHHhccCCCcchHHHHHHHHHHhc
Q 008465 374 KVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAG---VVPTLMHLLTEPGGGMVDEALAILAILS 450 (564)
Q Consensus 374 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g---~i~~Lv~lL~~~~~~~~~~al~~L~~L~ 450 (564)
.|+-..++..|+.=|+..+..-+.-...++.-.+. ..| ++|.|+.=-..++..++.-.+.++.-+-
T Consensus 760 --aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae---------~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 760 --AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAE---------YCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred --hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHh---------hcCchhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 34444455555555544332222222222221111 123 3333433333366667766666665443
Q ss_pred CChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 008465 451 SHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 451 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~ 494 (564)
..-.....-.-....|.|-+-|.+.++--|..|..++..|.-+.
T Consensus 829 eyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 829 EYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 32211111111124566666666677777888888887776554
No 139
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00024 Score=77.57 Aligned_cols=47 Identities=32% Similarity=0.721 Sum_probs=41.9
Q ss_pred CCCccCcccccCCCC-----CEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCC
Q 008465 162 PDDFRCPISLELMKD-----PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTL 209 (564)
Q Consensus 162 p~~f~Cpic~~lm~d-----Pv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l 209 (564)
..+-.|+||.+.|.. |-.++|||.|+..|+.+|+++ ..+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 347899999999998 778999999999999999995 78999999844
No 140
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.01 E-value=0.039 Score=54.18 Aligned_cols=223 Identities=13% Similarity=0.103 Sum_probs=147.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHH-HhCCHHHHHHhhCC--CCHHHHHHHHHHHHhcccCCccchhhhc-cCChH
Q 008465 268 SGSPEDQRSAAGEIRLLAKRNADNRVAIA-EAGAIPLLVGLLST--PDSRTQEHAVTALLNLSICEDNKGSIVS-SGAVP 343 (564)
Q Consensus 268 s~~~~~~~~al~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~~--~~~~i~~~A~~~L~nLs~~~~~~~~i~~-~g~i~ 343 (564)
+-++-.+.-|++++..+.. .++.|..+- +...-..++.+++. ++..+|.+.+-+++-|+.++...+.|-+ .+.+.
T Consensus 160 ~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~ 238 (432)
T COG5231 160 LIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIN 238 (432)
T ss_pred HHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3455677888899999885 677777653 44466778888877 4688999999999999887765544332 34566
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhccCCc--chhhHhhhcCChHHHHHhhccC---CHHHHHHHHHH---H----HHhhc
Q 008465 344 SIVHVLRIG-SMEARENAAATLFSLSVID--ENKVTIGASGAIPPLVTLLSEG---TQRGKKDAATA---L----FNLCI 410 (564)
Q Consensus 344 ~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~a---L----~nL~~ 410 (564)
.++.+.+.. ...+-+-+++++.++..-. .....++-.|-+.+-++.|..+ +++.+.+.-.. | ..|+.
T Consensus 239 dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~ 318 (432)
T COG5231 239 DLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCI 318 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhH
Confidence 677777765 3556677888888887622 2333444446566666666543 44443222111 1 11111
Q ss_pred c------------------------cChhHHHHH--cCChHHHHHhccCCCcc--hHHHHHHHHHHhcCChhhHHHHHhc
Q 008465 411 Y------------------------QGNKGKAVR--AGVVPTLMHLLTEPGGG--MVDEALAILAILSSHPEGKAAIGAA 462 (564)
Q Consensus 411 ~------------------------~~~~~~i~~--~g~i~~Lv~lL~~~~~~--~~~~al~~L~~L~~~~~~~~~i~~~ 462 (564)
. ..|...+.+ ..++..|..+++..+++ +..++-.+...+-..|+++..+...
T Consensus 319 fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Ky 398 (432)
T COG5231 319 FDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKY 398 (432)
T ss_pred HHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHh
Confidence 1 123344443 35788899999775544 3444444444555789999999999
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 008465 463 EAVPVLVEVIGNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 463 g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~ 491 (564)
|+=..+++++.++++++|-.|..++..+.
T Consensus 399 g~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 399 GVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999886653
No 141
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.0058 Score=65.18 Aligned_cols=181 Identities=20% Similarity=0.150 Sum_probs=119.2
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc------hhhHh
Q 008465 304 LVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE------NKVTI 377 (564)
Q Consensus 304 Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~------~~~~i 377 (564)
|+.+..+.|..++.+|+..|+.|+....- ..-.....++.++..+..+|..|+.+++-.+.... +-..-
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-----~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKL-----SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccc-----cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 77778888999999999999988753222 22345667888888888899888776665543221 11111
Q ss_pred hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhccc---------------------------------------------
Q 008465 378 GASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ--------------------------------------------- 412 (564)
Q Consensus 378 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~--------------------------------------------- 412 (564)
....++..+.+.+.+.+-.++..|+.+|+.+-.-.
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~adv 357 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADV 357 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccC
Confidence 11245666666666666666666666655442110
Q ss_pred ------ChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 008465 413 ------GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAV 486 (564)
Q Consensus 413 ------~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~ 486 (564)
+....++..|+.-.++.-|.+.-.+++.+|+..+..|+.+..+- ...++..|++++.+....+|..|..+
T Consensus 358 psee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMfNDE~~~VRL~ai~a 433 (823)
T KOG2259|consen 358 PSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRALDFLVDMFNDEIEVVRLKAIFA 433 (823)
T ss_pred chhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11123455566666776666655689999999999998653211 11257789999988888999999999
Q ss_pred HHHHhcC
Q 008465 487 LVHLCAG 493 (564)
Q Consensus 487 L~~L~~~ 493 (564)
|..|+.+
T Consensus 434 L~~Is~~ 440 (823)
T KOG2259|consen 434 LTMISVH 440 (823)
T ss_pred HHHHHHH
Confidence 9888764
No 142
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.16 Score=57.25 Aligned_cols=137 Identities=16% Similarity=0.201 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHH----hCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHH
Q 008465 273 DQRSAAGEIRLLAKRNADNRVAIAE----AGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVH 347 (564)
Q Consensus 273 ~~~~al~~L~~L~~~~~~~r~~i~~----~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ 347 (564)
...-++.+|+++.+.+++-...+.. -|..+.++.+|.+ +++.++.-|+.++.-+..+.+.-..++..|.+..++.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 4456788899988878854443322 2667777777776 5889999999999888888888899999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhc
Q 008465 348 VLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCI 410 (564)
Q Consensus 348 lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~ 410 (564)
+|.+. +..|+.++.+|..|+++.+-.+.-.+.|++..+.+++-.. .+..+..++..|+.|..
T Consensus 1821 lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1821 LLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 99764 5678999999999999988777777888888888877554 56777778888887753
No 143
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.98 E-value=0.00035 Score=71.77 Aligned_cols=53 Identities=21% Similarity=0.424 Sum_probs=45.2
Q ss_pred CCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHh----CCCCCCCCCCCCcCCC
Q 008465 161 IPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA----GHRTCPKTQQTLTSTA 213 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~----~~~~CP~~~~~l~~~~ 213 (564)
-.++-.|.+|.+.-.||+...|.|+|||.||..+... .+.+||.|...++...
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 3456889999999999999999999999999888762 3579999999887553
No 144
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.41 Score=52.13 Aligned_cols=217 Identities=14% Similarity=0.161 Sum_probs=150.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhccc-CCccc
Q 008465 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI-CEDNK 333 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~-~~~~~ 333 (564)
.++....++.+|++..+-++.+|+..+..+.-.-++.- ....|.|+.-|.++|+.++..|+.+++.||. ++.|-
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 45677889999999999999999999988775544421 1345999999999999999999999999987 44444
Q ss_pred hhhhccCChHHHHHHHhcC--CHHHHHHHHHHHHhccCCcc-hhhHhhhcCChHHHHHhhccCC-HHHHHHHHHHHH--H
Q 008465 334 GSIVSSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDE-NKVTIGASGAIPPLVTLLSEGT-QRGKKDAATALF--N 407 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~--n 407 (564)
-.+ -|.+.++|.+. ++ +....+....+|+-..+ -.+ ..+++|..++.+.. ..+...++.++. |
T Consensus 217 L~L-----AP~ffkllttSsNNW-mLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s 285 (877)
T KOG1059|consen 217 LQL-----APLFYKLLVTSSNNW-VLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVS 285 (877)
T ss_pred ccc-----cHHHHHHHhccCCCe-ehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeeh
Confidence 333 57788888654 33 33445667777775543 222 36799999998754 233344444332 4
Q ss_pred hhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 008465 408 LCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAV 486 (564)
Q Consensus 408 L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~ 486 (564)
++.+..+....++ -+++.|-.++.+.+++++.-++-++..+.. ++...++. -..++..|.+.++.+|..|+..
T Consensus 286 ~s~g~~d~~asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdL 359 (877)
T KOG1059|consen 286 MSSGMSDHSASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDL 359 (877)
T ss_pred hccCCCCcHHHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHH
Confidence 4444333333332 357777778888999999999988887764 44333222 3466778888889999999999
Q ss_pred HHHHhcC
Q 008465 487 LVHLCAG 493 (564)
Q Consensus 487 L~~L~~~ 493 (564)
|..+...
T Consensus 360 l~gmVsk 366 (877)
T KOG1059|consen 360 LYGMVSK 366 (877)
T ss_pred HHHHhhh
Confidence 8887754
No 145
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=0.032 Score=62.66 Aligned_cols=229 Identities=14% Similarity=0.091 Sum_probs=161.9
Q ss_pred HHHHHHHHHhcccCCc-c---chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHh-ccCCcchhhHhhhcCChHHHHHhh
Q 008465 316 QEHAVTALLNLSICED-N---KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFS-LSVIDENKVTIGASGAIPPLVTLL 390 (564)
Q Consensus 316 ~~~A~~~L~nLs~~~~-~---~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~lL 390 (564)
|.+-+++|.-|+..-+ + ...-..-|+.|-++++|++...|++..-+.+=.. |+.++.++..+.+.++-...+..|
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 3444555555554211 1 2223367999999999999999998876665544 455566777888877767777777
Q ss_pred ccC---CHHHHHHHHHHHHHhhcccC-hhHHHHHcCChHHHHHhccCC-CcchHHHHHHHHHHhc-CChhhHHHHHhcCC
Q 008465 391 SEG---TQRGKKDAATALFNLCIYQG-NKGKAVRAGVVPTLMHLLTEP-GGGMVDEALAILAILS-SHPEGKAAIGAAEA 464 (564)
Q Consensus 391 ~~~---~~~~~~~a~~aL~nL~~~~~-~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~~L~~L~-~~~~~~~~i~~~g~ 464 (564)
..+ +++-+..|+..|..++.+.. +.....+.+.+...+..|.++ .+-++.-++-+|+.|= .+++.|-.=.+.++
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 652 45778888999998887644 444566888999889999774 5667788888888874 45566655567789
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHhcCC----HHHHHHH-----------HHcCCHH----HHHHhhhcCCHHHHHHH
Q 008465 465 VPVLVEVIGNGSPRNRENAAAVLVHLCAGD----QQYLAEA-----------KELGVMG----PLVDLAQNGTDRGKRKA 525 (564)
Q Consensus 465 i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~----~~~~~~~-----------~~~g~i~----~L~~Ll~~~~~~~k~~A 525 (564)
...|+.+|.+..+++|..|+.+|..+..+. ++....+ ..+..+. .|+.+++++++-++...
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 999999999999999999999999987642 2221111 1122333 77788889999999888
Q ss_pred HHHHHHHHhhHHHHHHHhh
Q 008465 526 AQLLERMSRFIEQQKQAQV 544 (564)
Q Consensus 526 ~~lL~~l~~~~~~~~~~~~ 544 (564)
...|..+......+-...+
T Consensus 724 ~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 724 VVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHHHHHHHhhHHHhHHHh
Confidence 8888777766555444444
No 146
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.92 E-value=0.03 Score=60.67 Aligned_cols=277 Identities=13% Similarity=0.139 Sum_probs=159.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC--------CHHHHHHHHHHHHhc
Q 008465 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP--------DSRTQEHAVTALLNL 326 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--------~~~i~~~A~~~L~nL 326 (564)
....+..+++...++|.+.+.-.++.+...+.. ...-.......++|.++...... ...+.+.++.+-..+
T Consensus 634 Trevmlil~rEf~sPDeemkkivLKVv~qcc~t-~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~Kv 712 (1172)
T KOG0213|consen 634 TREVMLILIREFGSPDEEMKKIVLKVVKQCCAT-DGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKV 712 (1172)
T ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcc-cCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHh
Confidence 345577778888889999998889888888753 22222334445666666655431 122233333332222
Q ss_pred ccC------------CccchhhhccCChHHHHHHHhcC--CHHHHHHHH-HHHHhccCCcchh-----------hHhhh-
Q 008465 327 SIC------------EDNKGSIVSSGAVPSIVHVLRIG--SMEARENAA-ATLFSLSVIDENK-----------VTIGA- 379 (564)
Q Consensus 327 s~~------------~~~~~~i~~~g~i~~Lv~lL~~~--~~e~~~~a~-~~L~~Ls~~~~~~-----------~~i~~- 379 (564)
-.+ +..+-.-+..+.+..++..|... +....+.-. .+|..+......- ..++.
T Consensus 713 G~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r 792 (1172)
T KOG0213|consen 713 GSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGR 792 (1172)
T ss_pred CchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhc
Confidence 111 00000111233444444444332 112222211 1222222111000 01111
Q ss_pred -----cCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhH---HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcC
Q 008465 380 -----SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG---KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS 451 (564)
Q Consensus 380 -----~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~---~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~ 451 (564)
..++..++..|++.++.++..|+..+..|+..-..+. .+...|. .|.+.|....+++.-..++++..+..
T Consensus 793 ~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~n 870 (1172)
T KOG0213|consen 793 VKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVN 870 (1172)
T ss_pred cccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHH
Confidence 1234556677888899999999999888876444432 2333443 36777887888888777777775553
Q ss_pred ChhhHHHH-HhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHH
Q 008465 452 HPEGKAAI-GAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLE 530 (564)
Q Consensus 452 ~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~ 530 (564)
.-.-.... --.+.+|.|..+|++...+++++++..+..+|..+++++..--=..+---|++++.+.+..+++.|...+.
T Consensus 871 vigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG 950 (1172)
T KOG0213|consen 871 VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFG 950 (1172)
T ss_pred hccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22110000 01368999999999999999999999999999988864322111224456788888899999999999888
Q ss_pred HHHh
Q 008465 531 RMSR 534 (564)
Q Consensus 531 ~l~~ 534 (564)
.+++
T Consensus 951 ~Iak 954 (1172)
T KOG0213|consen 951 YIAK 954 (1172)
T ss_pred HHHH
Confidence 8775
No 147
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.92 E-value=0.0018 Score=43.81 Aligned_cols=39 Identities=38% Similarity=0.461 Sum_probs=35.6
Q ss_pred chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 008465 372 ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI 410 (564)
Q Consensus 372 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 410 (564)
+++..+.+.|+++.|++++.+++.++++.++++|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 467788899999999999999999999999999999973
No 148
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.031 Score=59.67 Aligned_cols=243 Identities=17% Similarity=0.174 Sum_probs=151.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhh
Q 008465 258 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV 337 (564)
Q Consensus 258 ~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~ 337 (564)
..+.++....+....+|..|..+.+.+...-+.+... -++|.++.-+..........++..|+.++....-+-...
T Consensus 217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 3444555555566778888877777765432221111 133444443333356677888889998876655555566
Q ss_pred ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHH
Q 008465 338 SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 417 (564)
Q Consensus 338 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 417 (564)
-..++|.+.++|-+..+++++.+..+|..++..-+|... ...+|.|++-+.+++..+.+ ++..|..=.. ..
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttF-----V~ 363 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTPE-CLDSLGATTF-----VA 363 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchHH-HHHhhcceee-----ee
Confidence 788999999999999999999999999999877665551 23577788877765433222 2222221111 11
Q ss_pred HHHcCChHHHHHhc----cCCCcchHHHHHHHHHHhcCChhhHHHHHhc--CChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 008465 418 AVRAGVVPTLMHLL----TEPGGGMVDEALAILAILSSHPEGKAAIGAA--EAVPVLVEVIGNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 418 i~~~g~i~~Lv~lL----~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~ 491 (564)
.++.-.+..++.+| ...+..+...++.+..|+|.--+....+... ..+|.|-..+.+..|++|.-++.+|..+-
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 22334444455554 4466778899999999998765444444331 24555555566667999999999997765
Q ss_pred cCCHHHHHHHHHcCCHHHHHHhhhcC
Q 008465 492 AGDQQYLAEAKELGVMGPLVDLAQNG 517 (564)
Q Consensus 492 ~~~~~~~~~~~~~g~i~~L~~Ll~~~ 517 (564)
..-..... .+.+|.|.+...+.
T Consensus 444 e~~g~~~f----~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 444 ERLGEVSF----DDLIPELSETLTSE 465 (569)
T ss_pred HHHHhhcc----cccccHHHHhhccc
Confidence 53322211 45666666666544
No 149
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.89 E-value=0.0064 Score=56.70 Aligned_cols=124 Identities=17% Similarity=0.103 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHhhcccChhHHHHH----------------cCChHHHHHhccC------CCcchHHHHHHHHHHhc
Q 008465 393 GTQRGKKDAATALFNLCIYQGNKGKAVR----------------AGVVPTLMHLLTE------PGGGMVDEALAILAILS 450 (564)
Q Consensus 393 ~~~~~~~~a~~aL~nL~~~~~~~~~i~~----------------~g~i~~Lv~lL~~------~~~~~~~~al~~L~~L~ 450 (564)
.+......++..|.||+..++....+++ ...+..|+..+.. ....-.+....+|.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 3344566788899999998888775553 2257778888755 22445778899999999
Q ss_pred CChhhHHHHHhc--CC--hHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHHhhhc
Q 008465 451 SHPEGKAAIGAA--EA--VPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKE--LGVMGPLVDLAQN 516 (564)
Q Consensus 451 ~~~~~~~~i~~~--g~--i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~--~g~i~~L~~Ll~~ 516 (564)
..+++|..+.+. +. +..|+.++...+..-|..++.+|.|+|...+.+...+-+ .++++.|+.-+..
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccC
Confidence 999999999875 34 788888888888777889999999999977666444443 3677777776663
No 150
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00072 Score=64.99 Aligned_cols=47 Identities=19% Similarity=0.612 Sum_probs=38.7
Q ss_pred ccCcccccCCC--CCE-EcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008465 165 FRCPISLELMK--DPV-IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 165 f~Cpic~~lm~--dPv-~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
.-|.||+.-+. |-+ .+||.|.|.+.|+.+|+..-...||+|+.+++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 57999998663 445 479999999999999998555679999998763
No 151
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.83 E-value=0.031 Score=62.08 Aligned_cols=273 Identities=16% Similarity=0.156 Sum_probs=158.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccC
Q 008465 261 ILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSG 340 (564)
Q Consensus 261 ~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g 340 (564)
-|++++.++|-+.+.-|...|..--.....+-..=.+...+..|+++|.+.+.++|..|+.+|+-|+.. + ...
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK------v-ke~ 81 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK------V-KED 81 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh------c-hHH
Confidence 788999999999999998877653322222111122345788999999999999999999999988721 1 111
Q ss_pred ChHHHHHHH----hcCCHHHHHHHHHHH-HhccCCcchhhHhhhcCChHHHHHhhccC------CHHHHHHHHHHHHHhh
Q 008465 341 AVPSIVHVL----RIGSMEARENAAATL-FSLSVIDENKVTIGASGAIPPLVTLLSEG------TQRGKKDAATALFNLC 409 (564)
Q Consensus 341 ~i~~Lv~lL----~~~~~e~~~~a~~~L-~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~~~~~a~~aL~nL~ 409 (564)
-+..+++-| -++....+..+.-.| ..++...+.........+.+.+...+.+. ...++-.++..++.+-
T Consensus 82 ~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~l 161 (1233)
T KOG1824|consen 82 QLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVL 161 (1233)
T ss_pred HHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Confidence 233344433 334444554444333 23333333333333344555555555432 2336666666666543
Q ss_pred cccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcC-ChHHHHHHHHHHH
Q 008465 410 IYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG-SPRNRENAAAVLV 488 (564)
Q Consensus 410 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~k~~A~~~L~ 488 (564)
..-..-.--...++...++.-|.++...++..|+.+|+.|+.... +.... +++..|++=|... .+.....-+..|.
T Consensus 162 sr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~-~~ly~--~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 162 SRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN-RDLYV--ELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred HhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC-HHHHH--HHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 322211111345666777777887888899999999999875432 11111 2344444444322 2333333445666
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHhh---hcCCHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 008465 489 HLCAGDQQYLAEAKELGVMGPLVDLA---QNGTDRGKRKAAQLLERMSRFIEQQKQAQV 544 (564)
Q Consensus 489 ~L~~~~~~~~~~~~~~g~i~~L~~Ll---~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~ 544 (564)
.+|+..+... ----..+++.+.+.. ...+++.+++....+..+-...+..--.++
T Consensus 239 ~i~r~ag~r~-~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~ 296 (1233)
T KOG1824|consen 239 AICRQAGHRF-GSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHV 296 (1233)
T ss_pred HHHHHhcchh-hcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccc
Confidence 6776432111 111124677888887 667899999999999988876655444333
No 152
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.82 E-value=0.029 Score=61.47 Aligned_cols=222 Identities=14% Similarity=0.109 Sum_probs=159.8
Q ss_pred ccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHH-hccCCcchhhHhhhcCChHHHHHhhccCCH-HHHHHHHHH
Q 008465 327 SICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLF-SLSVIDENKVTIGASGAIPPLVTLLSEGTQ-RGKKDAATA 404 (564)
Q Consensus 327 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~a 404 (564)
+.....+...++.|+...++.+...+.++.+-.+..+|. .++.... + ....++++.+.+..... --...++.+
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~~~en~E~L~a 565 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEKGLENFEALEA 565 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHHHHHHHHHHHH
Confidence 344455778889999999999999998888888888877 3332211 0 12466777666655432 223578999
Q ss_pred HHHhhcccCh-hHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHH-HHh-cCChHHHHHHHhcCChHHHH
Q 008465 405 LFNLCIYQGN-KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAA-IGA-AEAVPVLVEVIGNGSPRNRE 481 (564)
Q Consensus 405 L~nL~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~-i~~-~g~i~~Lv~lL~~~~~~~k~ 481 (564)
+.||++..+. |..+++.-.++.+-.++...++..+..++..+.||.-++..-.. +++ ...++.....+.........
T Consensus 566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 9999887654 66788877777777788888999999999999999988865544 344 34677777777765566666
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhhchhhHHHHH
Q 008465 482 NAAAVLVHLCAGDQQYLA-EAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQIQ 553 (564)
Q Consensus 482 ~A~~~L~~L~~~~~~~~~-~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~~~~ 553 (564)
.+++++..+......++. ...-......+..++.++++.++........++..........++.++.+..++
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~ 718 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLS 718 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHH
Confidence 777777767666655665 333346788999999999999998888877777777777666677666665444
No 153
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.80 E-value=0.0022 Score=46.74 Aligned_cols=55 Identities=27% Similarity=0.172 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 008465 354 MEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 408 (564)
Q Consensus 354 ~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 408 (564)
+.+|..|+++|.+++........-....+++.|+.+|.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999887665554445568999999999999999999999999876
No 154
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.001 Score=65.64 Aligned_cols=48 Identities=27% Similarity=0.674 Sum_probs=40.3
Q ss_pred CCCccCcccccCC-CC------------CEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 162 PDDFRCPISLELM-KD------------PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 162 p~~f~Cpic~~lm-~d------------Pv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.++-.|.||++-| .. |-.++|||.+.-.|+..|+. ...+||.|+.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCccc
Confidence 4678999999864 32 36799999999999999998 5789999999854
No 155
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.78 E-value=0.048 Score=60.72 Aligned_cols=234 Identities=14% Similarity=0.116 Sum_probs=136.5
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHH-HHHHHHHhcccCCcc
Q 008465 254 AERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQE-HAVTALLNLSICEDN 332 (564)
Q Consensus 254 ~~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~-~A~~~L~nLs~~~~~ 332 (564)
.+...+..+++.|...+.++|..|+++|.-|+..-++.+..- .+..|..-+-++....+. .++....-++.-.+.
T Consensus 44 Se~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~ 119 (1233)
T KOG1824|consen 44 SERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPS 119 (1233)
T ss_pred chhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCc
Confidence 456789999999999999999999999999986544443222 233333332222222222 222222222222222
Q ss_pred chhhhccCChHHHHHHHhcCC------HHHHHHHHHHHHhc----cCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHH
Q 008465 333 KGSIVSSGAVPSIVHVLRIGS------MEARENAAATLFSL----SVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAA 402 (564)
Q Consensus 333 ~~~i~~~g~i~~Lv~lL~~~~------~e~~~~a~~~L~~L----s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 402 (564)
........+.+.+...|.... ..++..++..+..+ ...-.+ ...+.+..++.-+.+....+++.|+
T Consensus 120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~----fh~~il~~l~~ql~s~R~aVrKkai 195 (1233)
T KOG1824|consen 120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN----FHLSILKCLLPQLQSPRLAVRKKAI 195 (1233)
T ss_pred cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc----hHHHHHHHHhhcccChHHHHHHHHH
Confidence 333334455555555554331 12444444444332 221111 1224556666666777788999999
Q ss_pred HHHHHhhcccChhHHHHHcCChHHHHHhccC-CCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHH---hcCChH
Q 008465 403 TALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVI---GNGSPR 478 (564)
Q Consensus 403 ~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~ 478 (564)
.+|+.|+...++. .-.+++..|+.=|.. ..+....--+.+|+.++.....|.----...+|.+.++. ...+++
T Consensus 196 ~~l~~la~~~~~~---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDE 272 (1233)
T KOG1824|consen 196 TALGHLASSCNRD---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDE 272 (1233)
T ss_pred HHHHHHHHhcCHH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHH
Confidence 9999998875542 223566677777755 333444445666666654433222111225788899988 567789
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 008465 479 NRENAAAVLVHLCAGDQQYL 498 (564)
Q Consensus 479 ~k~~A~~~L~~L~~~~~~~~ 498 (564)
+|+.+..++..+-...|...
T Consensus 273 LrE~~lQale~fl~rcp~ei 292 (1233)
T KOG1824|consen 273 LREYCLQALESFLRRCPKEI 292 (1233)
T ss_pred HHHHHHHHHHHHHHhChhhh
Confidence 99999999988877666443
No 156
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.13 Score=56.58 Aligned_cols=218 Identities=16% Similarity=0.122 Sum_probs=121.0
Q ss_pred hhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHH
Q 008465 307 LLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPL 386 (564)
Q Consensus 307 lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L 386 (564)
=|++.+.-++-.|+.+|++++..+- ..+..|.+.++|+..++-+|..|+-+...+-.-.+.-.. .+++..
T Consensus 115 DL~s~nq~vVglAL~alg~i~s~Em------ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e----~f~~~~ 184 (866)
T KOG1062|consen 115 DLNSSNQYVVGLALCALGNICSPEM------ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE----HFVIAF 184 (866)
T ss_pred hccCCCeeehHHHHHHhhccCCHHH------hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH----HhhHHH
Confidence 3455677788889999999875332 234578899999999999999999888777543222111 244555
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhcccCh-hHHHHHcCChHHHHHhccC---------------CCcchHHHHHHHHHHhc
Q 008465 387 VTLLSEGTQRGKKDAATALFNLCIYQGN-KGKAVRAGVVPTLMHLLTE---------------PGGGMVDEALAILAILS 450 (564)
Q Consensus 387 v~lL~~~~~~~~~~a~~aL~nL~~~~~~-~~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~al~~L~~L~ 450 (564)
.++|.+.+..+...++..+..+|..... -..+-+ .++.++..|+. ++|-++...+.+|..|.
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence 5555555555555555555555544221 111111 23333332221 23445555666666555
Q ss_pred CChhhHH-HHHh------------cC-ChHHHHHHHh-----cCChHHHHHHHHHHHHHhcCCHHHHHHHHH--------
Q 008465 451 SHPEGKA-AIGA------------AE-AVPVLVEVIG-----NGSPRNRENAAAVLVHLCAGDQQYLAEAKE-------- 503 (564)
Q Consensus 451 ~~~~~~~-~i~~------------~g-~i~~Lv~lL~-----~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~-------- 503 (564)
.++.... .+-+ .+ +=..|.+..+ ..+..+++.|+.+|..+-.+.+.+...+.-
T Consensus 263 q~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~ 342 (866)
T KOG1062|consen 263 QNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQ 342 (866)
T ss_pred CCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhc
Confidence 4432211 1100 00 1112222221 134667888888888776655543333211
Q ss_pred --cCC----HHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008465 504 --LGV----MGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 504 --~g~----i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
..+ -..+++.+++.+.-+|++|.+++-.|...+
T Consensus 343 ~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~ 381 (866)
T KOG1062|consen 343 QDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES 381 (866)
T ss_pred CCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc
Confidence 111 235677788889999999999887776543
No 157
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.72 E-value=0.22 Score=56.30 Aligned_cols=240 Identities=15% Similarity=0.108 Sum_probs=147.2
Q ss_pred HHHHhCCHHHHHHhhCC-----CCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHh----cCC----HHHHHHH
Q 008465 294 AIAEAGAIPLLVGLLST-----PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLR----IGS----MEARENA 360 (564)
Q Consensus 294 ~i~~~g~i~~Lv~lL~~-----~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~e~~~~a 360 (564)
.+.+.|++..++.+|.+ .+.......+.+|...+.-..||..+.+.|+++.|++.|. .+. .++.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 45567999999999876 2345556667777777888899999999999999999885 223 5566666
Q ss_pred HHHHHhccCCcc---hhhHhh----------hcCChHHHHHhhccC----CHHHHHHHHHHHHHhhcccChhHHHHHcCC
Q 008465 361 AATLFSLSVIDE---NKVTIG----------ASGAIPPLVTLLSEG----TQRGKKDAATALFNLCIYQGNKGKAVRAGV 423 (564)
Q Consensus 361 ~~~L~~Ls~~~~---~~~~i~----------~~g~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~ 423 (564)
..++..|...-. ...... ....+..|++.+.+. ++.+....+++|-+|+...+.....+-.-
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 665555532211 111000 112366666666654 67888999999999999888766543211
Q ss_pred hHHHHHh--ccCCCcchHHHHHHHHHHhc----CCh---hhHHHHHhcCChHHHHHHHhcCC--------hHHH------
Q 008465 424 VPTLMHL--LTEPGGGMVDEALAILAILS----SHP---EGKAAIGAAEAVPVLVEVIGNGS--------PRNR------ 480 (564)
Q Consensus 424 i~~Lv~l--L~~~~~~~~~~al~~L~~L~----~~~---~~~~~i~~~g~i~~Lv~lL~~~~--------~~~k------ 480 (564)
+.+.+++ +......--...+.++..++ .+. .-+..+++.|++...+++|...- +.-+
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 2222222 11110000112244444443 222 34678899999999999886532 3233
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC-CHHHHHHHHHHHHHHHhh
Q 008465 481 --ENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 481 --~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~~ 535 (564)
..++.+|.-||.+... .+.++..++++.|..|-+.. +.++...|-.+|..|...
T Consensus 351 sLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred cHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 3577888888887754 34446667777777665543 455666666666666653
No 158
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.68 E-value=0.11 Score=56.50 Aligned_cols=230 Identities=18% Similarity=0.191 Sum_probs=143.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhH---HHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCcc-
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNR---VAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN- 332 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r---~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~- 332 (564)
..+..++..|++.++.++.+|+..+..++.- ..++ ..+...|. .|...|....+++.-..+.+|..+...-.-
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~V-lktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 4566777888899999999999998888752 1122 23344453 466788888888776555555544321111
Q ss_pred chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcch----hhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 008465 333 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN----KVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 408 (564)
Q Consensus 333 ~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 408 (564)
+..---.|.+|.|.-.|++....++++.+..+..++..... |+.+ .+--.|+++|+..+.++++.|..+++.+
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nTfG~I 952 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNTFGYI 952 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 11111367899999999999999999999999999876432 2222 2334578888888889999988888877
Q ss_pred hcccC------------------hhH------HHH--HcCC---hHHHHHhccCCCcchHHHHHHHHHHhcCCh--hhHH
Q 008465 409 CIYQG------------------NKG------KAV--RAGV---VPTLMHLLTEPGGGMVDEALAILAILSSHP--EGKA 457 (564)
Q Consensus 409 ~~~~~------------------~~~------~i~--~~g~---i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~--~~~~ 457 (564)
+.--. +|. .++ ..|- +|.|+.=-..++..++.-.+.+|.-+-..- -++.
T Consensus 953 akaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigemskd 1032 (1172)
T KOG0213|consen 953 AKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKD 1032 (1172)
T ss_pred HHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhh
Confidence 64211 111 122 1232 333333333356667766666666443321 1222
Q ss_pred HHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 008465 458 AIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 458 ~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~ 494 (564)
-+. .+.|.|-+-|.+.++--|..|+.++..|+.+.
T Consensus 1033 Yiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1033 YIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred HHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 222 25666677777777777888888888877653
No 159
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.52 Score=51.22 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=68.7
Q ss_pred CChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHH
Q 008465 422 GVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQQYLAE 500 (564)
Q Consensus 422 g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~k~~A~~~L~~L~~~~~~~~~~ 500 (564)
.++..|-++|.+.+.+++--|+..+..|+........+-.. ...++..|+ ..+..+|..|+..|..+|-.+ +++.
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~--Nak~ 404 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS--NAKQ 404 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh--hHHH
Confidence 34566677777777777888888888777765555554443 677788888 467789999999999998643 4443
Q ss_pred HHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 501 AKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 501 ~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
+ +.-|+..+.+-++.+|+.-.-=...|++
T Consensus 405 I-----V~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 405 I-----VAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred H-----HHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 3 3345566666666666655444444443
No 160
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.2 Score=55.07 Aligned_cols=259 Identities=14% Similarity=0.114 Sum_probs=131.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCC-ccchh
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE-DNKGS 335 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~-~~~~~ 335 (564)
...+...+.|++.++-++.+|+-+...+....|+--. .+++....+|.+.+..+...++..+..++... ++-..
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~ 216 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-----HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSY 216 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-----HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHH
Confidence 4556667778889999999999888877765555332 23455555666555555555555555554421 11111
Q ss_pred hhccCChHHHHHHHhc---------------CCHHHHHHHHHHHHhccCCcch------------------hhHhhhc--
Q 008465 336 IVSSGAVPSIVHVLRI---------------GSMEARENAAATLFSLSVIDEN------------------KVTIGAS-- 380 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~---------------~~~e~~~~a~~~L~~Ls~~~~~------------------~~~i~~~-- 380 (564)
+-+ .++.++..|+. .+|-++...+++|.-|-.++.. -.-+++.
T Consensus 217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAIL 294 (866)
T KOG1062|consen 217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAIL 294 (866)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHH
Confidence 111 33444444431 1233444444444444433321 1111111
Q ss_pred -CChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHH---------HH--HcCCh----HHHHHhccCCCcchHHHHHH
Q 008465 381 -GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK---------AV--RAGVV----PTLMHLLTEPGGGMVDEALA 444 (564)
Q Consensus 381 -g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~---------i~--~~g~i----~~Lv~lL~~~~~~~~~~al~ 444 (564)
..+..+..+ ..+...+..|+.+|+....++++-.+ .+ +..++ ..++..|.+++..++..|+.
T Consensus 295 YE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralE 372 (866)
T KOG1062|consen 295 YECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALE 372 (866)
T ss_pred HHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 111111111 12445566666666665544433211 11 11122 24666777777777777777
Q ss_pred HHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHH
Q 008465 445 ILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRK 524 (564)
Q Consensus 445 ~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~ 524 (564)
.+..|......+ . .+..|+++|...++..|...+.-+..++..-..... =.+..+...+.....-++..
T Consensus 373 Ls~~lvn~~Nv~-~-----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~-----W~idtml~Vl~~aG~~V~~d 441 (866)
T KOG1062|consen 373 LSYALVNESNVR-V-----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKR-----WHIDTMLKVLKTAGDFVNDD 441 (866)
T ss_pred HHHHHhccccHH-H-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcch-----hHHHHHHHHHHhcccccchh
Confidence 777666543222 1 345677777766777777666555555432111111 13556666666654555544
Q ss_pred -HHHHHHHHHhh
Q 008465 525 -AAQLLERMSRF 535 (564)
Q Consensus 525 -A~~lL~~l~~~ 535 (564)
...+|+.+...
T Consensus 442 v~~nll~LIa~~ 453 (866)
T KOG1062|consen 442 VVNNLLRLIANA 453 (866)
T ss_pred hHHHHHHHHhcC
Confidence 44466666665
No 161
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.65 E-value=0.33 Score=54.19 Aligned_cols=142 Identities=18% Similarity=0.122 Sum_probs=107.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhh
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 336 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i 336 (564)
...+.+++.+.+.|.+.++-.-..|...++.+++- ++. ++..+.+=++++++.+|-.|++.+..+-. .=
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~~------~e 123 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AVNTIQKDLQDPNEEIRGFALRTLSLLRV------KE 123 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HHHHHHhhccCCCHHHHHHHHHHHHhcCh------HH
Confidence 34455666666777777777777777777766621 121 46777888889999999999999987732 11
Q ss_pred hccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 008465 337 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY 411 (564)
Q Consensus 337 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 411 (564)
+-..+++++.+.+.++++.+|..|+-+++++-..+ +....+.|.+..+..++.+.++.+..+|+.+|..+...
T Consensus 124 l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 124 LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 22446889999999999999999999999996433 34455668999999999999999999999999988654
No 162
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.63 E-value=0.014 Score=48.25 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHHHh--cCChHHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 008465 438 MVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIG--NGSPRNRENAAAVLVHLCAGDQQYLAEAKEL 504 (564)
Q Consensus 438 ~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~ 504 (564)
++...+.+|+||+. ++..+..+.+.|+++.++.... ..+|-++|.|+.++.|||.+++++...+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 46678999999985 4577888888899999998754 4569999999999999999999888777653
No 163
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.59 E-value=0.0028 Score=46.18 Aligned_cols=55 Identities=24% Similarity=0.153 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHh
Q 008465 395 QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAIL 449 (564)
Q Consensus 395 ~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L 449 (564)
+.++..|+++|++++........-....+++.|+.+|.++++.++..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999887777666667778999999999998889999999999875
No 164
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.033 Score=60.86 Aligned_cols=244 Identities=17% Similarity=0.096 Sum_probs=152.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhh
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 336 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i 336 (564)
...+.++..+...|.+.+.-+--.|.+.+...++- ..+++..+++=..++++.+|.-|++.++-+-.+.
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~------ 117 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK------ 117 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH------
Confidence 34566777777777776666666777777765542 2356777777778889999999988876664321
Q ss_pred hccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh-h
Q 008465 337 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN-K 415 (564)
Q Consensus 337 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~ 415 (564)
+-.-...++...++++++.+|..++....++- +.+.......|.++.|-+++.+.++.+..+|+.+|..+.....+ .
T Consensus 118 i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 118 ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 11234678889999999999999988888874 34455566779999999999999999999999999999876653 1
Q ss_pred HHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 008465 416 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 495 (564)
Q Consensus 416 ~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~ 495 (564)
...+....+..++..+...+..-+-..+.+|.+-.-.++ +... ..+..+...|.+.++.+...++.++..+...-+
T Consensus 196 ~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REAE---DICERLTPRLQHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhHH---HHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence 111222334445555544333344444555554433332 1111 134455555666666666666666666554333
Q ss_pred HHHHHHHHcCCHHHHHHhhhcCC
Q 008465 496 QYLAEAKELGVMGPLVDLAQNGT 518 (564)
Q Consensus 496 ~~~~~~~~~g~i~~L~~Ll~~~~ 518 (564)
. .....-..+.++|+.++....
T Consensus 272 ~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 272 Q-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred H-HHHHHHHHhcccceeeecccc
Confidence 3 222222234555555554443
No 165
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.54 E-value=0.0098 Score=49.10 Aligned_cols=71 Identities=13% Similarity=0.159 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhh--cCCHHHHHHHHHHHHHHHhhHHHHHHHhhchhhH
Q 008465 479 NRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQ--NGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQ 549 (564)
Q Consensus 479 ~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~--~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~ 549 (564)
.|...+.+|.|+|..++..+..+.+.|+++.++.... ..+|-+++.|.+++++|.+..++.++.+.+-+..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~~~ 74 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLEPQ 74 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcccc
Confidence 3667889999999999999999999999999998865 3489999999999999999999988888754443
No 166
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0021 Score=62.79 Aligned_cols=53 Identities=23% Similarity=0.499 Sum_probs=45.3
Q ss_pred CCCCCCCCccCcccccCCCCCEEc-CCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 157 KAPVIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 157 ~~~~~p~~f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
....+|+.-.||+|..--.+|..+ .+|..||..||-.+.. .+.+||+|+.+..
T Consensus 293 ~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 293 SELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred cccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 344567889999999999888876 5799999999999998 6889999988764
No 167
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.45 E-value=0.2 Score=53.02 Aligned_cols=271 Identities=13% Similarity=0.096 Sum_probs=168.7
Q ss_pred hHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHhCC--HHHHHHhhCC-CCHHHHHHHHHHHHh-ccc---
Q 008465 257 TKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADNRVAIAEAGA--IPLLVGLLST-PDSRTQEHAVTALLN-LSI--- 328 (564)
Q Consensus 257 ~~i~~Lv~~L~s~-~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~--i~~Lv~lL~~-~~~~i~~~A~~~L~n-Ls~--- 328 (564)
+..+.++...... ....++.++..+.+.+.. ..-...+...+. +.....-++. .+..+|..|+.+|.+ |-.
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~ 211 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG 211 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555443 345788899999998853 222334444443 2233334444 467889999999988 322
Q ss_pred ---CCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCHHHHHHHHHH
Q 008465 329 ---CEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATA 404 (564)
Q Consensus 329 ---~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 404 (564)
.+.+|..+ +..+++.-+..+.+++..|-.+|..+.... ..-..+.+.-........+++.+.++...|+..
T Consensus 212 nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEf 286 (858)
T COG5215 212 NFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEF 286 (858)
T ss_pred hhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 22334443 344555556668889988888988886543 333344455555566777888888888887766
Q ss_pred HHHhhcccC-----------------hhHHHHHcCChHHHHHhccC-------CCcchHHHHHHHHHHhcCChhhHHHHH
Q 008465 405 LFNLCIYQG-----------------NKGKAVRAGVVPTLMHLLTE-------PGGGMVDEALAILAILSSHPEGKAAIG 460 (564)
Q Consensus 405 L~nL~~~~~-----------------~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~al~~L~~L~~~~~~~~~i~ 460 (564)
-..+|...- +.....-..++|.|+.+|.. ++.++-..|..+|...+.... ..|.
T Consensus 287 WsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~i~ 364 (858)
T COG5215 287 WSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DKIM 364 (858)
T ss_pred HHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hHhH
Confidence 555553211 11111223578999999965 123455556666654443221 1122
Q ss_pred hcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008465 461 AAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 461 ~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
+. ++..+-.-+++.+...++.|+.++..+-.+....+..-+-..++|.+..++.++.-.++..++|++..+.++-
T Consensus 365 ~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v 439 (858)
T COG5215 365 RP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV 439 (858)
T ss_pred HH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH
Confidence 21 2333333456677888999999999988776655544455568899999999889999999999999888754
No 168
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.092 Score=57.50 Aligned_cols=233 Identities=16% Similarity=0.118 Sum_probs=145.1
Q ss_pred CchHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHH
Q 008465 215 TPNYVLRSLIAQWCEANGIEPPKRPSSSRPSKTSSACSPAERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVA 294 (564)
Q Consensus 215 ~~n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~ 294 (564)
+.|..+++++-.|.-.+...-|.- ..+.+..++....+.+|.++..|++.+..+--.. .
T Consensus 60 T~dlelKKlvyLYl~nYa~~~P~~----------------a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~--i--- 118 (734)
T KOG1061|consen 60 TRDLELKKLVYLYLMNYAKGKPDL----------------AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK--I--- 118 (734)
T ss_pred cCCchHHHHHHHHHHHhhccCchH----------------HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH--H---
Confidence 445677888888877766543333 2356777888888899999999888776654211 1
Q ss_pred HHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcch-
Q 008465 295 IAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN- 373 (564)
Q Consensus 295 i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~- 373 (564)
-.-+..+|.++++++++.+|..|.....++- ..+.+.....|.++.+.+++.+.++.+..+|.++|..+...+.+
T Consensus 119 --~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~ 194 (734)
T KOG1061|consen 119 --TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV 194 (734)
T ss_pred --HHHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC
Confidence 1124678999999999999998887777764 33456677899999999999988999999999999999866543
Q ss_pred hhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCCh
Q 008465 374 KVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP 453 (564)
Q Consensus 374 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~ 453 (564)
.........+..++..+..-++-.+-..+.+|.+-.-.++ +. ...++..+...|.+.+..++-.+..++.++...-
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~e---a~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-RE---AEDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hh---HHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 1111112333444444443333334333444433332222 11 1134455666677777777777777777666443
Q ss_pred hhHHHHHhcCChHHHHHHHhcCC
Q 008465 454 EGKAAIGAAEAVPVLVEVIGNGS 476 (564)
Q Consensus 454 ~~~~~i~~~g~i~~Lv~lL~~~~ 476 (564)
.......-....+.|+.++.+.+
T Consensus 271 ~~~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 271 KQVNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HHHHHHHHHHhcccceeeecccc
Confidence 33222222234555555554433
No 169
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.35 E-value=0.0023 Score=65.06 Aligned_cols=46 Identities=24% Similarity=0.606 Sum_probs=38.0
Q ss_pred CCCccCcccccCCCCCE----EcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 162 PDDFRCPISLELMKDPV----IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv----~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.+--.||+|++-|.+-| ++.|.|+|--.|+.+|+ +.+||+||...+
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~---~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW---DSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcc---cCcChhhhhhcC
Confidence 33448999999998766 35899999999999996 568999988665
No 170
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.18 Score=57.81 Aligned_cols=220 Identities=14% Similarity=0.156 Sum_probs=129.9
Q ss_pred CCCHHHHHHHHHHHHhcccCCccchhhhc--cCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc--hhhHhhhcCChHH
Q 008465 310 TPDSRTQEHAVTALLNLSICEDNKGSIVS--SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--NKVTIGASGAIPP 385 (564)
Q Consensus 310 ~~~~~i~~~A~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~ 385 (564)
+.+..+|..+..+|..++..+........ ......+...+++....++...+.+|..|-.... +...+ ...|+-
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHH
Confidence 34788999999999999766332222211 1223334444444445566666666665543322 22211 123444
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcC------ChHHHHHhccC----CCcchHHHHHHHHHHhcCCh-h
Q 008465 386 LVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAG------VVPTLMHLLTE----PGGGMVDEALAILAILSSHP-E 454 (564)
Q Consensus 386 Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g------~i~~Lv~lL~~----~~~~~~~~al~~L~~L~~~~-~ 454 (564)
++-.++..+...+..|..+|..++. .....+.| .|...+.++.. ....++..-+-++..+.... .
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4444477788999999999998873 11111111 33444444432 22222222122333222211 1
Q ss_pred hHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 455 GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 455 ~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
......-.+.+..+..+|.++++.+...|+..+..++..-|..+..-...-+++.+..++++++-..+.+...+|..|.+
T Consensus 819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 11111112355666667778899999999999999998887766555555689999999999999999999999987765
Q ss_pred h
Q 008465 535 F 535 (564)
Q Consensus 535 ~ 535 (564)
.
T Consensus 899 k 899 (1176)
T KOG1248|consen 899 K 899 (1176)
T ss_pred H
Confidence 4
No 171
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.30 E-value=0.095 Score=58.30 Aligned_cols=168 Identities=21% Similarity=0.175 Sum_probs=121.7
Q ss_pred HccCCHHHHHHHHHHH-HHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHH
Q 008465 266 LTSGSPEDQRSAAGEI-RLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPS 344 (564)
Q Consensus 266 L~s~~~~~~~~al~~L-~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~ 344 (564)
+.+++...+..|++.+ ..++.+++ . .-..|-+++...+.|.+++.-.-.=|.+.+...+....+ ++..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-m------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-M------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-h------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHH
Confidence 6667777788887644 44444333 1 123466677667778888776665566666544433322 3667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCCh
Q 008465 345 IVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVV 424 (564)
Q Consensus 345 Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i 424 (564)
+.+=+.++++.+|..|.+++..|=... .-..+++++.+++.++++.+++.|+-|+.++-..+. ....+.|.+
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~e------l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~--~l~~~~g~~ 168 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVKE------LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK--DLYHELGLI 168 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChHH------HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH--hhhhcccHH
Confidence 777788899999999999998884211 122468999999999999999999999999865433 344577899
Q ss_pred HHHHHhccCCCcchHHHHHHHHHHhcCC
Q 008465 425 PTLMHLLTEPGGGMVDEALAILAILSSH 452 (564)
Q Consensus 425 ~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 452 (564)
..+..++.+.++.++..|+..|..+...
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 9999999999999999999999988654
No 172
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.23 E-value=0.22 Score=50.36 Aligned_cols=191 Identities=16% Similarity=0.141 Sum_probs=114.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhc--CChHHHHHhhccCCHHHHHHHHHHHHHhhcc---cChhHH
Q 008465 343 PSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS--GAIPPLVTLLSEGTQRGKKDAATALFNLCIY---QGNKGK 417 (564)
Q Consensus 343 ~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~---~~~~~~ 417 (564)
...+..+...+.+.|+.+...+..+.........+... ..++.+.+.++.+..+-+..|+.++.-|+.. ......
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 34445555566888999998888876554443444332 5677888888888776677788877777665 223334
Q ss_pred HHHcCChHHHHHhccCCC--cchHHHHHHHHHHhcC---C-hhhHHHHHhcCChHHHHH--HHhc-C---------ChHH
Q 008465 418 AVRAGVVPTLMHLLTEPG--GGMVDEALAILAILSS---H-PEGKAAIGAAEAVPVLVE--VIGN-G---------SPRN 479 (564)
Q Consensus 418 i~~~g~i~~Lv~lL~~~~--~~~~~~al~~L~~L~~---~-~~~~~~i~~~g~i~~Lv~--lL~~-~---------~~~~ 479 (564)
+++ .+.|.|.+.+.+.. ..++..|+.+|+.++. . ++......+ .+..+.. .++. + ++.+
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 444 67888888887744 3455566666665532 2 222221111 2221111 1221 1 2345
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHH
Q 008465 480 RENAAAVLVHLCAG-DQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIE 537 (564)
Q Consensus 480 k~~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~ 537 (564)
...|+..-.-|... ++......+ ...++.|..++.+.+..+|..|...|..|.+...
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 55554333333322 332333333 3468999999999999999999999999976654
No 173
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.22 E-value=0.095 Score=50.66 Aligned_cols=191 Identities=16% Similarity=0.168 Sum_probs=129.6
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHH--hCCHHHHHH-------hhCCCC--H---HHHHHHHHHHHhcccCCccchh
Q 008465 270 SPEDQRSAAGEIRLLAKRNADNRVAIAE--AGAIPLLVG-------LLSTPD--S---RTQEHAVTALLNLSICEDNKGS 335 (564)
Q Consensus 270 ~~~~~~~al~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~-------lL~~~~--~---~i~~~A~~~L~nLs~~~~~~~~ 335 (564)
+++.+..|+.+|..--... .+-..+.- .|.+..|+. .|+.+. . .-..+|+..|--++.+++.|..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~-~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESF-PDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC--TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcc-cchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 5677888888777543322 22333332 366666654 333332 2 2224566666667889999999
Q ss_pred hhccCChHHHHHHHhcCC-----HHHHHHHHHHHHhccCCc--chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 008465 336 IVSSGAVPSIVHVLRIGS-----MEARENAAATLFSLSVID--ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 408 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~~~-----~e~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 408 (564)
++++...--+.-+|+..+ ..+|-.+..++..|...+ +....+....++|..++.+..|++-.|..|...+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999998888888886653 457888899999998754 4555667789999999999999999999999999998
Q ss_pred hcccChhHHHHH--------cCChHHHHHh-ccCCCcchHHHHHHHHHHhcCChhhHHHHHh
Q 008465 409 CIYQGNKGKAVR--------AGVVPTLMHL-LTEPGGGMVDEALAILAILSSHPEGKAAIGA 461 (564)
Q Consensus 409 ~~~~~~~~~i~~--------~g~i~~Lv~l-L~~~~~~~~~~al~~L~~L~~~~~~~~~i~~ 461 (564)
..++.+-..+.+ ..++..++.- ...+++.+.+..+.+-..|+.++..+..+..
T Consensus 167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 887765443321 1233344433 3458889999999999999999999888764
No 174
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.18 E-value=0.18 Score=47.98 Aligned_cols=140 Identities=16% Similarity=0.124 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccC-----CCcchHHHHHHHHHHhcCChh--hHHHHHhcCChHHHHH
Q 008465 398 KKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-----PGGGMVDEALAILAILSSHPE--GKAAIGAAEAVPVLVE 470 (564)
Q Consensus 398 ~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~al~~L~~L~~~~~--~~~~i~~~g~i~~Lv~ 470 (564)
.-+|+..|.-++++++.+..++++.+--.|..+|.. +...++-.++++++.|..+++ ....+..+++||..+.
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 357788888899999999999998887777777744 335678889999999986653 3455677899999999
Q ss_pred HHhcCChHHHHHHHHHHHHHhcCCHH---HHHH-----HHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHH
Q 008465 471 VIGNGSPRNRENAAAVLVHLCAGDQQ---YLAE-----AKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIE 537 (564)
Q Consensus 471 lL~~~~~~~k~~A~~~L~~L~~~~~~---~~~~-----~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~ 537 (564)
.+..|+...|.-|..++..+-..+.. .|+. .+..-.-..+..+...++.++-+.+..+...|.+..+
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 99999999999999999887654431 1111 1111112334455566788888888888888876654
No 175
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.18 E-value=0.011 Score=59.84 Aligned_cols=51 Identities=25% Similarity=0.512 Sum_probs=44.6
Q ss_pred ccCcccccCCCCCEEc-CCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCc
Q 008465 165 FRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTP 216 (564)
Q Consensus 165 f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 216 (564)
+.|.|++++..+||+- .+||.|+|+-|++++.+ +.+||.++++++..++.+
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 4799999999999985 68999999999999985 778999999998666654
No 176
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.9 Score=50.11 Aligned_cols=208 Identities=15% Similarity=0.110 Sum_probs=133.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhc
Q 008465 259 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVS 338 (564)
Q Consensus 259 i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~ 338 (564)
-..|.++|.|.....++.|.+-|-.+.....+. ....|.+|+-..+.+.+++.-.---|..-+....+-..+
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-- 108 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-- 108 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence 467899999998889999998666654434432 234588999999999999987776666666554443333
Q ss_pred cCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh-hHH
Q 008465 339 SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN-KGK 417 (564)
Q Consensus 339 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~~~ 417 (564)
-|..+-+-|+.+++.+|..|+++|..+- ..+...-++-.+-+...+..+-+++.|+.||-.|-+-+.+ +.+
T Consensus 109 --SIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q 180 (968)
T KOG1060|consen 109 --SINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ 180 (968)
T ss_pred --eHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence 3667788899999999999999888773 1221111222333444566789999999999988654443 433
Q ss_pred HHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 008465 418 AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 418 i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~ 491 (564)
+ +..+-.+|.+.++-+.-.|+.++..+|-+. ...|- +--..|..+|..-+...|......|..-|
T Consensus 181 L-----~e~I~~LLaD~splVvgsAv~AF~evCPer--ldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYA 245 (968)
T KOG1060|consen 181 L-----EEVIKKLLADRSPLVVGSAVMAFEEVCPER--LDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYA 245 (968)
T ss_pred H-----HHHHHHHhcCCCCcchhHHHHHHHHhchhH--HHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence 3 334555677788888888888888777431 11111 12344445554444444444444444443
No 177
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.21 Score=54.84 Aligned_cols=257 Identities=19% Similarity=0.199 Sum_probs=150.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCc-----
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED----- 331 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~----- 331 (564)
...+++=..|.+....+..+|++.+..+...++. .+. .++..|--+++++...+|..|+++|-.+|.-..
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 4455666666777888899999999888754432 111 267788888999999999999999999875321
Q ss_pred -c--chhhh----ccCChHHHHHHHhcCCHHHHH----HHHHHHHhccCCcchhhHhhh-------------cCChHHHH
Q 008465 332 -N--KGSIV----SSGAVPSIVHVLRIGSMEARE----NAAATLFSLSVIDENKVTIGA-------------SGAIPPLV 387 (564)
Q Consensus 332 -~--~~~i~----~~g~i~~Lv~lL~~~~~e~~~----~a~~~L~~Ls~~~~~~~~i~~-------------~g~i~~Lv 387 (564)
| -+.++ ..-+...+..+|+.|+.+-.. .......+++ ++++..+.+ .+.+..|.
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvdai~sLc~~fp~k~~~~m~FL~ 397 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVDAIRSLCLKFPRKHTVMMNFLS 397 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHHHHHHHHhhccHHHHHHHHHHH
Confidence 1 11222 123455677788887644333 3334444443 233322111 14455555
Q ss_pred Hhhcc-CCHHHHHHHHHHHHHhhc-ccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCCh
Q 008465 388 TLLSE-GTQRGKKDAATALFNLCI-YQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAV 465 (564)
Q Consensus 388 ~lL~~-~~~~~~~~a~~aL~nL~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i 465 (564)
.+|++ |.-+.++....++..+.. .++.|.. +...|..++.+ -+....+..+|..|..... ....-...+
T Consensus 398 ~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIED--ce~~~i~~rILhlLG~EgP--~a~~Pskyi 468 (865)
T KOG1078|consen 398 NMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIED--CEFTQIAVRILHLLGKEGP--KAPNPSKYI 468 (865)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHh--ccchHHHHHHHHHHhccCC--CCCCcchhh
Confidence 55544 234455555555555444 3333322 23344444432 2234445555555542110 001112345
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 466 PVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 466 ~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
..+...+.-.+..+|-.|+.+|.++..+++.- ...+...|...+.+.++.+++.|...|.++..
T Consensus 469 r~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 469 RFIYNRVILENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 55555555567788999999999988554321 22355677778889999999999999999984
No 178
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.12 E-value=0.16 Score=54.23 Aligned_cols=256 Identities=15% Similarity=0.126 Sum_probs=145.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh--hhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCc-c
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA--DNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED-N 332 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~--~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~-~ 332 (564)
...+..++..|++..+.++..|+.....|++--. .-.+.+...|. .|..-|....+++.-..+.++..+...-. .
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 4677888999999999999999988877764111 11223444453 35566777778877666666555532111 1
Q ss_pred chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcch----hhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 008465 333 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN----KVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 408 (564)
Q Consensus 333 ~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 408 (564)
+-+---.|.+|.|.-.|++....+..+....+..++.+... |+.+ .+--.|+++|++-+.+++++|..+++.+
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 11111378999999999999889999999999999877532 2222 2334578888999999999999999877
Q ss_pred hcccChhHHHHHcCChHHHHHhccCCCcchH---HHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHH
Q 008465 409 CIYQGNKGKAVRAGVVPTLMHLLTEPGGGMV---DEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAA 485 (564)
Q Consensus 409 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~---~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~ 485 (564)
+.--.. ..++..|++-|...+...+ ..|+.+.+..|.- ..++|.|+.=-.++...++...+.
T Consensus 758 s~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp---------fsVlP~lm~dY~TPe~nVQnGvLk 822 (975)
T COG5181 758 SRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP---------FSVLPTLMSDYETPEANVQNGVLK 822 (975)
T ss_pred HhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc---------hhhHHHHHhcccCchhHHHHhHHH
Confidence 643222 1233344444433221111 1122222222211 123444433333444555665555
Q ss_pred HHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 008465 486 VLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 486 ~L~~L~~~~~-~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
++..+..... .....+ ..+.|.|-+.+.+.++--+..|..++++|.
T Consensus 823 am~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 823 AMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred HHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 4444433221 111111 124455555566666666666666666654
No 179
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.09 E-value=0.027 Score=47.84 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHH-ccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcc
Q 008465 255 ERTKIEILLCKL-TSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 327 (564)
Q Consensus 255 ~~~~i~~Lv~~L-~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs 327 (564)
+-..+..|++.| .+.++....-|+..|..+++..|..|..+-+.|+-..++.++.++|++++.+|+.++..+.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 347889999999 4567888888999999999999999999988999999999999999999999999887653
No 180
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.08 E-value=0.005 Score=60.69 Aligned_cols=53 Identities=13% Similarity=0.364 Sum_probs=42.0
Q ss_pred CCCCccCcccccCCCC--CE-E-cCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 008465 161 IPDDFRCPISLELMKD--PV-I-VSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVT 215 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~d--Pv-~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~ 215 (564)
-...|.|||+...|.. +. . .+|||.|+..++...- ....||.|+.++...+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 3567999999999953 23 3 3999999999998873 356799999999977654
No 181
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.07 E-value=0.38 Score=55.29 Aligned_cols=256 Identities=16% Similarity=0.173 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhccc----CCccchhhhccCChHHH
Q 008465 270 SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI----CEDNKGSIVSSGAVPSI 345 (564)
Q Consensus 270 ~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~----~~~~~~~i~~~g~i~~L 345 (564)
..+.+..|+.-|..++..... ...=.-++|.++.++.++..++|..|+.+|..+.. -+..-..|.-.-.+|.|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 346788899999988853221 11223578999999999999999999998887632 12233455566778888
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhccC------------------CcchhhHhhhc-----------CChHHHHHhhccCCH
Q 008465 346 VHVLRIGS-MEARENAAATLFSLSV------------------IDENKVTIGAS-----------GAIPPLVTLLSEGTQ 395 (564)
Q Consensus 346 v~lL~~~~-~e~~~~a~~~L~~Ls~------------------~~~~~~~i~~~-----------g~i~~Lv~lL~~~~~ 395 (564)
-.++.+.+ ..+|-.-|..|..|+. ++.+-....+. ++-.....|+.+.++
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 88887743 2333333333333321 11111111110 122233344445555
Q ss_pred HHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcC
Q 008465 396 RGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG 475 (564)
Q Consensus 396 ~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~ 475 (564)
-++..-+..|.-||..-.-.. .+.-+++.|+.+|.+.+..++..-..-+..++..-.- .-++++.+|.|.+-|.++
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDG 668 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCc
Confidence 666666666776664311100 0123567777778777665554444433333322111 113445688888888888
Q ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 476 SPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 476 ~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
.+-+...|+..|..||..+--....+.+ +++...-++-+++..+|+.+..+|....+
T Consensus 669 EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 669 EEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred chhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 8888888988888888754222222222 45566667778888899888887766554
No 182
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.0045 Score=57.86 Aligned_cols=53 Identities=17% Similarity=0.513 Sum_probs=44.9
Q ss_pred CCccCcccccCCCCCE---Ec-CCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCc
Q 008465 163 DDFRCPISLELMKDPV---IV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTP 216 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv---~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 216 (564)
..|.||+|.+.+.+.+ .+ +|||.||..|.++.+. +...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEe
Confidence 4689999999998644 23 8999999999999887 6889999999999887765
No 183
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.00 E-value=0.0027 Score=63.87 Aligned_cols=35 Identities=17% Similarity=0.621 Sum_probs=31.2
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHH
Q 008465 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE 196 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~ 196 (564)
.+++.||||...+++|++++|||..|+.|-...+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 46899999999999999999999999999875543
No 184
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.96 E-value=0.69 Score=44.67 Aligned_cols=195 Identities=18% Similarity=0.200 Sum_probs=120.2
Q ss_pred hCCHHHHHHhhCCC--CHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhh
Q 008465 298 AGAIPLLVGLLSTP--DSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKV 375 (564)
Q Consensus 298 ~g~i~~Lv~lL~~~--~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~ 375 (564)
..++|.|+..|... .+-+|..|..+|.++. + .+.++.+-+..+.+..++++.+..++..+-..+....
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence 45789999988764 5677888998987775 2 3334445555545556666666666655532111000
Q ss_pred -----Hh--------hhcCChHHHHHhhccCCHH-H-HHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHH
Q 008465 376 -----TI--------GASGAIPPLVTLLSEGTQR-G-KKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVD 440 (564)
Q Consensus 376 -----~i--------~~~g~i~~Lv~lL~~~~~~-~-~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 440 (564)
.. ...+-+..|-..|.+.+.. . +..|...|.|+-. ..+|..|++-|..++.-.+.
T Consensus 136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~Salfrh 205 (289)
T KOG0567|consen 136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRH 205 (289)
T ss_pred ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHH
Confidence 00 1112344444444443322 2 2333333333311 13455666667667777888
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCC
Q 008465 441 EALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN--GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGT 518 (564)
Q Consensus 441 ~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~ 518 (564)
.+..+|+.|-.. -.|+.|.+.|.. ..|-+|..|+.+|..++... .++.|.+.+.+..
T Consensus 206 EvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-----------~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 206 EVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADED-----------CVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----------HHHHHHHHcCCcH
Confidence 899998877543 368888888865 45889999999999887532 5667778888888
Q ss_pred HHHHHHHHHHHHHHH
Q 008465 519 DRGKRKAAQLLERMS 533 (564)
Q Consensus 519 ~~~k~~A~~lL~~l~ 533 (564)
+-+++.+...|..+-
T Consensus 265 ~vv~esc~valdm~e 279 (289)
T KOG0567|consen 265 RVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 878887777776653
No 185
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0019 Score=45.41 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=38.7
Q ss_pred ccCcccccCCCCCEEcCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 165 FRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 165 f~Cpic~~lm~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
-.|.||.+-..|.|.-.|||. .|..|-.+.++.++..||.||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 569999998888888899995 7888887777768899999998763
No 186
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.78 E-value=0.29 Score=53.97 Aligned_cols=239 Identities=17% Similarity=0.111 Sum_probs=153.0
Q ss_pred ChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHH-hcccCCccchhhhccCChHHHHHHHhcCC-HHHHHHHHHHHH
Q 008465 288 NADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALL-NLSICEDNKGSIVSSGAVPSIVHVLRIGS-MEARENAAATLF 365 (564)
Q Consensus 288 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~-nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~-~e~~~~a~~~L~ 365 (564)
...-+...+..|+...|+++.....+....++..+|. .+++... . ....++++...+.+.. .--.-.++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~--~---~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE--R---SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC--c---hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 4444556677889999999888877777777777776 2222111 0 1233444444444332 112345778888
Q ss_pred hccCCcc-hhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHH-HHH-cCChHHHHHhccCCCcchHHHH
Q 008465 366 SLSVIDE-NKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK-AVR-AGVVPTLMHLLTEPGGGMVDEA 442 (564)
Q Consensus 366 ~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~-i~~-~g~i~~Lv~lL~~~~~~~~~~a 442 (564)
||+..++ .|..|....+++.+-.++...++..+..++..+.||..++---.+ +++ ....+.....+........-++
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 9987754 566688877777777778888899999999999999987765444 334 2345555555544444445555
Q ss_pred HHHHHHhcCChhhHHH-HHh-cCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHH
Q 008465 443 LAILAILSSHPEGKAA-IGA-AEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDR 520 (564)
Q Consensus 443 l~~L~~L~~~~~~~~~-i~~-~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~ 520 (564)
++++..++...++... +.+ ......++.++.++++.++...+.+++|+.....+....+.....++.+..+-.-.-..
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence 6666645444433222 322 35678888899999999999999888887776666677777766776666655443344
Q ss_pred HHHHHHHHHHH
Q 008465 521 GKRKAAQLLER 531 (564)
Q Consensus 521 ~k~~A~~lL~~ 531 (564)
.++.|...|..
T Consensus 728 ~~~~~~~~l~~ 738 (748)
T KOG4151|consen 728 KREDAAPCLSA 738 (748)
T ss_pred hhhhhhhHHHH
Confidence 44444444443
No 187
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.67 E-value=0.49 Score=45.86 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHHhhcccChhHHHH--HcCChHHHHHhccC-------CC-----cchHHHHHHHHHHhcCChhhHHHH
Q 008465 394 TQRGKKDAATALFNLCIYQGNKGKAV--RAGVVPTLMHLLTE-------PG-----GGMVDEALAILAILSSHPEGKAAI 459 (564)
Q Consensus 394 ~~~~~~~a~~aL~nL~~~~~~~~~i~--~~g~i~~Lv~lL~~-------~~-----~~~~~~al~~L~~L~~~~~~~~~i 459 (564)
+++.++.|+.-|..--...++-.-++ .-|.+..|++=+-+ +. .+-+-.|++.|..++.+|+.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 45667766655554333333333333 45777776553322 21 133456788888999999999999
Q ss_pred HhcCChHHHHHHHhcCC-----hHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 008465 460 GAAEAVPVLVEVIGNGS-----PRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 460 ~~~g~i~~Lv~lL~~~~-----~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
+++...-.|..+|...+ ..+|-.+.+++..|...++ +....+++..++|..+..+..|+.-.|.-|..++.-+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99998888888997654 3468888999999987554 56788888999999999999999999999999998776
Q ss_pred hhHH
Q 008465 534 RFIE 537 (564)
Q Consensus 534 ~~~~ 537 (564)
..+.
T Consensus 168 ~dd~ 171 (262)
T PF04078_consen 168 LDDV 171 (262)
T ss_dssp HSHH
T ss_pred cchh
Confidence 5554
No 188
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.51 E-value=0.17 Score=57.95 Aligned_cols=235 Identities=18% Similarity=0.133 Sum_probs=147.0
Q ss_pred CHHHHHHhhCC-CCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCC----cchh
Q 008465 300 AIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENK 374 (564)
Q Consensus 300 ~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~----~~~~ 374 (564)
+++.+...++. .....+..|+..|..||.....-..+ .-++|-++.++..+...+|..|+.+|..+-.. ...-
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 46666666665 45677889999999998643222222 34689999999999999999999888776432 2333
Q ss_pred hHhhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcc-------------------cCh--hH--------HHHHcCCh
Q 008465 375 VTIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIY-------------------QGN--KG--------KAVRAGVV 424 (564)
Q Consensus 375 ~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~-------------------~~~--~~--------~i~~~g~i 424 (564)
..|...-.+|.|-.++.+. ...++..-+..|..|+.. +++ .. ..+-.++=
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~ 580 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE 580 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence 4455556778888888773 344444444444444321 111 00 01111222
Q ss_pred HHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhc----CChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHH
Q 008465 425 PTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAA----EAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAE 500 (564)
Q Consensus 425 ~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~----g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~ 500 (564)
+..+.+|.++.+.|+..-+..|.-||.. +.+. =.++.|+.+|.+.+..+|-.-...|.-+|..-+ ..
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~r 651 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WR 651 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---ee
Confidence 3344455555555666556666666532 1111 257888999988877777654444444332111 11
Q ss_pred HHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhhc
Q 008465 501 AKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQ 545 (564)
Q Consensus 501 ~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~ 545 (564)
-++++++|.|..-+.++.+.+-.+|...|..|.+..-.+|..+.+
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~ 696 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD 696 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH
Confidence 135567888888899999999999999999999988777766554
No 189
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.48 E-value=0.32 Score=51.37 Aligned_cols=163 Identities=16% Similarity=0.111 Sum_probs=117.2
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCH----HHHHHHHHHHHHhhcccChhH
Q 008465 341 AVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQ----RGKKDAATALFNLCIYQGNKG 416 (564)
Q Consensus 341 ~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~a~~aL~nL~~~~~~~~ 416 (564)
....+++++.+++...+..|...|..|+.+......+....++..|..++.+++. ......+.++..+-...-.-.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4566888999999888888999999999999888899999999999999998854 455666666666554433222
Q ss_pred HHHHcCChHHHHHhcc--CCCcchHHHHHHHHHHhcCChh-hHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 008465 417 KAVRAGVVPTLMHLLT--EPGGGMVDEALAILAILSSHPE-GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAG 493 (564)
Q Consensus 417 ~i~~~g~i~~Lv~lL~--~~~~~~~~~al~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~ 493 (564)
..+...+|.....+.. ..+..+...|+..|.++..+.. -++.+.++--+..|+..|...+..++.+|.+.|-.+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 2233333444444432 2456678889999999987765 556666667799999999998888888888888777654
Q ss_pred CH-HHHHHHHH
Q 008465 494 DQ-QYLAEAKE 503 (564)
Q Consensus 494 ~~-~~~~~~~~ 503 (564)
.+ ..+..+.+
T Consensus 244 a~~~~R~~~~~ 254 (713)
T KOG2999|consen 244 APDDKRFEMAK 254 (713)
T ss_pred CChHHHHHHHH
Confidence 43 33444433
No 190
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.45 E-value=0.17 Score=51.66 Aligned_cols=217 Identities=13% Similarity=0.122 Sum_probs=150.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHh--CCHHHHHHhhCCCCHHHHHHHHHHHHhccc
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRV-----AIAEA--GAIPLLVGLLSTPDSRTQEHAVTALLNLSI 328 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~-----~i~~~--g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~ 328 (564)
.+.+..|+..|..-+.+.+..+.....++.+.....+. .+... .++..|+.--. ++++-..+...|.....
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHh
Confidence 36788899999999999999999999988876555543 33332 23444444333 55566667777888888
Q ss_pred CCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhc---CChHHHHHhhccCCHHHHHHHHHH
Q 008465 329 CEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGAS---GAIPPLVTLLSEGTQRGKKDAATA 404 (564)
Q Consensus 329 ~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~a 404 (564)
++.--..|.....+..+.+....++-++...|..++..|-..+ ......... .++...-.+|.+++--++..++..
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 8776667777888888999999999999999999998865443 222222222 567788899999999999999999
Q ss_pred HHHhhcccChhHHHH----HcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhc--CChHHHHHHHhc
Q 008465 405 LFNLCIYQGNKGKAV----RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAA--EAVPVLVEVIGN 474 (564)
Q Consensus 405 L~nL~~~~~~~~~i~----~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~--g~i~~Lv~lL~~ 474 (564)
|+.|..+..|...+. +..-+..++.+|++.+..++-.|..++.....+|..-..|.+- .==..|+++|..
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~ 308 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKD 308 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 999999999876443 4557888899999999999999999999888777433322210 012456666643
No 191
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.42 E-value=0.45 Score=48.19 Aligned_cols=185 Identities=21% Similarity=0.263 Sum_probs=103.1
Q ss_pred HhhCCCCHHHHHHHHHHHHhcccCCccchhhh--ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCC---cchhhHhhhc
Q 008465 306 GLLSTPDSRTQEHAVTALLNLSICEDNKGSIV--SSGAVPSIVHVLRIGSMEARENAAATLFSLSVI---DENKVTIGAS 380 (564)
Q Consensus 306 ~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~---~~~~~~i~~~ 380 (564)
..+.......|+.++..+.++....-....+. ....++.+.+.++.|..+-+..|+.++.-|+.. ......+. .
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~ 128 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-E 128 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-H
Confidence 33444456677777777766643322222222 234577788888888766566676666666543 12223332 2
Q ss_pred CChHHHHHhhccCC--HHHHHHHHHHHHHhhcccChh-HHHH-HcCChHHH--HHhccC----------CCcchHHHHHH
Q 008465 381 GAIPPLVTLLSEGT--QRGKKDAATALFNLCIYQGNK-GKAV-RAGVVPTL--MHLLTE----------PGGGMVDEALA 444 (564)
Q Consensus 381 g~i~~Lv~lL~~~~--~~~~~~a~~aL~nL~~~~~~~-~~i~-~~g~i~~L--v~lL~~----------~~~~~~~~al~ 444 (564)
...|.|...+.+++ ...+..++.+|+-++.....- ..+. -...+..+ ...+.. +++.+...|+.
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 56778888887764 455556666666554422111 1111 01122211 111111 23457777766
Q ss_pred HHHHhcC-Chhh-HHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 008465 445 ILAILSS-HPEG-KAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 445 ~L~~L~~-~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
.-+-|.. .+.. ..... ...++.|..+|.+.+..+|..|..+|.-|..
T Consensus 209 aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6665543 3332 22222 2469999999999999999999888876654
No 192
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.42 E-value=1.9 Score=46.09 Aligned_cols=291 Identities=11% Similarity=0.028 Sum_probs=163.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhcc
Q 008465 260 EILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS 339 (564)
Q Consensus 260 ~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~ 339 (564)
.+.=+.+.+.+|..+..|+-++.....+..+....-.-..++|.+.....++...+...+.|+++.++.+- ...|-..
T Consensus 369 ~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v--a~~i~p~ 446 (858)
T COG5215 369 GFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV--AMIISPC 446 (858)
T ss_pred HHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH--HHhcCcc
Confidence 33344566788988999999999887654444333344567888888888777788899999999987432 1223345
Q ss_pred CChHHHHHHHhcC---CHHHHHHHHHHHHhccCCcc-hh---hHhhhc---CChHHHHHhhc--cCCHHHHHHHHHHHHH
Q 008465 340 GAVPSIVHVLRIG---SMEARENAAATLFSLSVIDE-NK---VTIGAS---GAIPPLVTLLS--EGTQRGKKDAATALFN 407 (564)
Q Consensus 340 g~i~~Lv~lL~~~---~~e~~~~a~~~L~~Ls~~~~-~~---~~i~~~---g~i~~Lv~lL~--~~~~~~~~~a~~aL~n 407 (564)
|-++..+.-+--| .+....+..|+..+|...-. .. ...... .++..|+.--. ..+...+..+..+|..
T Consensus 447 ~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgt 526 (858)
T COG5215 447 GHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGT 526 (858)
T ss_pred ccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 5555555544433 46677788888888875421 11 111111 22222222211 1133556666677777
Q ss_pred hhcccChhHHHHHcC-----------ChHHHHHhccCCC----cchHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHH
Q 008465 408 LCIYQGNKGKAVRAG-----------VVPTLMHLLTEPG----GGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEV 471 (564)
Q Consensus 408 L~~~~~~~~~i~~~g-----------~i~~Lv~lL~~~~----~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~l 471 (564)
|......-..-+-.| .+..+-+.|.-.+ .+++..-+.+|..+... +...+.+ +...+..++++
T Consensus 527 li~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~ 605 (858)
T COG5215 527 LILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRI 605 (858)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHH
Confidence 655433221111112 2222322332211 23444445555544321 1111111 11246677778
Q ss_pred HhcCCh-HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhhchhhHH
Q 008465 472 IGNGSP-RNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQS 550 (564)
Q Consensus 472 L~~~~~-~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~ 550 (564)
|.+..+ ..-.....++.+|...- +..-..--..++|.|..-++-.+..+...|..++.-|...-...-..+++.--.+
T Consensus 606 les~~~t~~~~dV~~aIsal~~sl-~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~ 684 (858)
T COG5215 606 LESTKPTTAFGDVYTAISALSTSL-EERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSS 684 (858)
T ss_pred HhccCCchhhhHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 877644 34555666777776533 2222233346899999999777788888999999988887766666666655445
Q ss_pred HHHh
Q 008465 551 QIQE 554 (564)
Q Consensus 551 ~~~~ 554 (564)
.+|+
T Consensus 685 LvQ~ 688 (858)
T COG5215 685 LVQC 688 (858)
T ss_pred HHHH
Confidence 5554
No 193
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.0041 Score=58.92 Aligned_cols=56 Identities=21% Similarity=0.462 Sum_probs=43.4
Q ss_pred CCCccCcccccCCCCCE----------EcCCCCcccHHHHHHHHHhCC-CCCCCCCCCCcCCCCCch
Q 008465 162 PDDFRCPISLELMKDPV----------IVSTGQTYERSCIEKWLEAGH-RTCPKTQQTLTSTAVTPN 217 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv----------~~~cg~t~~r~ci~~~~~~~~-~~CP~~~~~l~~~~l~~n 217 (564)
-++-.|.+|.+-+.+.+ .++|+|.|...||..|.--|. .+||-|...+....+..|
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 45678999998665444 589999999999999998665 699999887764444433
No 194
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=2.4 Score=46.31 Aligned_cols=245 Identities=13% Similarity=0.083 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcC-
Q 008465 274 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG- 352 (564)
Q Consensus 274 ~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~- 352 (564)
+...+-+.-+|+.+-+.....+. ..+..|-.+|++....+|.-|+..++.|+......+.+-.. .+.++..|+..
T Consensus 306 ~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkter 381 (938)
T KOG1077|consen 306 KNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTER 381 (938)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhcccc
Confidence 44444455555544333333332 35678888999989999999999999998776666655544 78899999954
Q ss_pred CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhccc--C------hhH-------H
Q 008465 353 SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ--G------NKG-------K 417 (564)
Q Consensus 353 ~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~--~------~~~-------~ 417 (564)
+..+|+.|+..|..++..+. .+.| +..|+..|.+.+..+++..+.-.+-|+..- + ... .
T Consensus 382 DvSirrravDLLY~mcD~~N-ak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd 455 (938)
T KOG1077|consen 382 DVSIRRRAVDLLYAMCDVSN-AKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGD 455 (938)
T ss_pred chHHHHHHHHHHHHHhchhh-HHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcc
Confidence 88999999999999985443 3333 466777777777777766554444343211 1 000 2
Q ss_pred HHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCC--hHHHHHHH---------------hc----CC
Q 008465 418 AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEA--VPVLVEVI---------------GN----GS 476 (564)
Q Consensus 418 i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~--i~~Lv~lL---------------~~----~~ 476 (564)
+++.++...++++..+ +++++..|+.-+...-..+..-+.++..|+ +...-.++ .+ -+
T Consensus 456 ~vsdeVW~RvvQiVvN-nedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s 534 (938)
T KOG1077|consen 456 YVSDEVWYRVVQIVVN-NEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCS 534 (938)
T ss_pred cccHHHHHHhheeEec-chhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCC
Confidence 3345667777777754 567888888877766666666666665432 22222222 21 22
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 477 PRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 477 ~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
+..|---+.+...++...|+.... +...+..-.+.-+.+++..|.+-|....-
T Consensus 535 ~~tr~lLLtTyiKl~nl~PEi~~~-----v~~vFq~~~n~~D~ElQqRa~EYLql~k~ 587 (938)
T KOG1077|consen 535 PVTRALLLTTYIKLINLFPEIKSN-----VQKVFQLYSNLIDVELQQRAVEYLQLSKL 587 (938)
T ss_pred hhHHHHHHHHHHHHHhhChhhhHH-----HHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 333333334444444444432222 12222223333578888888887766653
No 195
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.10 E-value=0.13 Score=42.25 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=54.5
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 008465 463 EAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 463 g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
..++.++..+.+.+.++|..|+.+|.|++......... .-..+...|..++.+.++++|..|..+-+.|.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 37889999999999999999999999998744322211 12348889999999999999988876666653
No 196
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.08 E-value=0.091 Score=49.06 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHhcccCCccchhhh----------------ccCChHHHHHHHhcC------CHHHHHHHHHHHHhc
Q 008465 310 TPDSRTQEHAVTALLNLSICEDNKGSIV----------------SSGAVPSIVHVLRIG------SMEARENAAATLFSL 367 (564)
Q Consensus 310 ~~~~~i~~~A~~~L~nLs~~~~~~~~i~----------------~~g~i~~Lv~lL~~~------~~e~~~~a~~~L~~L 367 (564)
.++...-..++.+|.||+..+.....+. +..++..|+..+..| ...-....+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 3344455667888888887766555433 223667777777652 233457888999999
Q ss_pred cCCcchhhHhhhc--CC--hHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHc---CChHHHHHhc
Q 008465 368 SVIDENKVTIGAS--GA--IPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRA---GVVPTLMHLL 431 (564)
Q Consensus 368 s~~~~~~~~i~~~--g~--i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~---g~i~~Lv~lL 431 (564)
+..++.|..+... +. +..|+.++.+.+..-+.-++.+|.|.|...+....+... +++|.|+--|
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 9999999998876 44 777778877777777788999999999999988877753 4444444333
No 197
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.08 E-value=0.092 Score=40.56 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccC-CCcchHHHHHHHHHHhcCChhhHHHHHhcC
Q 008465 398 KKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILSSHPEGKAAIGAAE 463 (564)
Q Consensus 398 ~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~~~~~~i~~~g 463 (564)
.+.|++|+++++..+.+...+-+.++++.++++... +...++--|..+|..++...++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 578999999999998888877788999999999865 778899999999999999999998877665
No 198
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.01 Score=60.95 Aligned_cols=51 Identities=16% Similarity=0.500 Sum_probs=38.5
Q ss_pred CCCCccCcccccCCC-----------------CCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008465 161 IPDDFRCPISLELMK-----------------DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~-----------------dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
....--|+||+.... +=+.+||.|.|.+.|+++|.+...-.||+||.+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 455567999986331 122358999999999999998545589999999863
No 199
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.02 E-value=1.4 Score=46.05 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=117.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCcc----hhhHhhhcCChHHHHHhhccC-------CHHHHHHHHHHHHHhhccc
Q 008465 344 SIVHVLRIGSMEARENAAATLFSLSVIDE----NKVTIGASGAIPPLVTLLSEG-------TQRGKKDAATALFNLCIYQ 412 (564)
Q Consensus 344 ~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~nL~~~~ 412 (564)
.+..+++..+.+-+-.|.-....+..+++ +|+.+.+.-+++.+-+++.++ +.-.+..++..|.-.|..+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 35555555565556666666677776653 677788888889999999764 2234567788888888887
Q ss_pred Chh--HHHHHcCChHHHHHhccC-CCcc------hHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCC-hHHHHH
Q 008465 413 GNK--GKAVRAGVVPTLMHLLTE-PGGG------MVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS-PRNREN 482 (564)
Q Consensus 413 ~~~--~~i~~~g~i~~Lv~lL~~-~~~~------~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~k~~ 482 (564)
+-. ..++ ..||.|+.++.. .+++ +.+.+-.+|..++..+.|...++..|+++.+.++-...+ ..-..-
T Consensus 95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 753 3455 468999999865 3444 889999999999999999999999999999987654332 223444
Q ss_pred HHHHHHHHhcCCH---HHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHH
Q 008465 483 AAAVLVHLCAGDQ---QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLE 530 (564)
Q Consensus 483 A~~~L~~L~~~~~---~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~ 530 (564)
|..++.-+...-. +....+.. ++..+..=+...+...|-..+.+|.
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~ 221 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLS 221 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444444332211 11111111 1223333333345556666777776
No 200
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.95 E-value=1.2 Score=41.23 Aligned_cols=92 Identities=21% Similarity=0.153 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCC-hHHHHHH
Q 008465 270 SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGA-VPSIVHV 348 (564)
Q Consensus 270 ~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~-i~~Lv~l 348 (564)
++.++.-++..+..|+...+..- ...+|.+...|.++++.+|..|+.+|..|...+- +--.|- +..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHH
Confidence 46788889999999887554322 2357899999999999999999999999965321 112233 3788888
Q ss_pred HhcCCHHHHHHHHHHHHhccCC
Q 008465 349 LRIGSMEARENAAATLFSLSVI 370 (564)
Q Consensus 349 L~~~~~e~~~~a~~~L~~Ls~~ 370 (564)
|.+.+++++..|...+..++..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9888999999999999998755
No 201
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.92 E-value=0.39 Score=53.58 Aligned_cols=181 Identities=10% Similarity=0.073 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhcc
Q 008465 353 SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLT 432 (564)
Q Consensus 353 ~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~ 432 (564)
.+-++..|++++..-+....... ...+++..|+.+....+.++......+|+..+..+.......+..+.|....++.
T Consensus 504 ~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~ 581 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFL 581 (1005)
T ss_pred CCchhHHHHHHHHhccCceeccc--cchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHH
Confidence 45566777777766652211110 1237888899998888888988999999999999888888888888998888874
Q ss_pred C--CCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCC----hHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 008465 433 E--PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS----PRNRENAAAVLVHLCAGDQQYLAEAKELGV 506 (564)
Q Consensus 433 ~--~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~ 506 (564)
. .+|.+...+-.++..|+....+..-+. +..||.++..|.... +....-|+.+|..+.++.+.-....+-.-+
T Consensus 582 k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~ 660 (1005)
T KOG2274|consen 582 KYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYA 660 (1005)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 3 678888888888888877554443333 247999999998654 556667777887777776644443334446
Q ss_pred HHHHHHhh-hcCCHHHHHHHHHHHHHHHhhH
Q 008465 507 MGPLVDLA-QNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 507 i~~L~~Ll-~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
.|++.++. ++++...-..|.++|+.+-...
T Consensus 661 FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 661 FPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred hHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 77777775 4556777788999999887764
No 202
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.019 Score=53.82 Aligned_cols=37 Identities=27% Similarity=0.499 Sum_probs=32.5
Q ss_pred CCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHH
Q 008465 160 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE 196 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~ 196 (564)
.+.+.-+|.+|++..+|||+.+.||.|||.||.+++-
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 3455558899999999999999999999999999885
No 203
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.42 Score=53.10 Aligned_cols=216 Identities=16% Similarity=0.118 Sum_probs=132.2
Q ss_pred CCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHh
Q 008465 310 TPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTL 389 (564)
Q Consensus 310 ~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~l 389 (564)
++.+.++..|+.-|..+.........+...+++...+..|++.++-+--+|...+..|+.. ....++|.|.+.
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~ 810 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEE 810 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHH
Confidence 3445567777777777776555566677788888888888888776666777766666633 334567777764
Q ss_pred hccC----CHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhH--HHHHhcC
Q 008465 390 LSEG----TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK--AAIGAAE 463 (564)
Q Consensus 390 L~~~----~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~--~~i~~~g 463 (564)
-.+. ..+.+...-.++.++......-..=..+-.+...+..+++++...+..+++.|++||.--..+ ..+.+
T Consensus 811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e-- 888 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE-- 888 (982)
T ss_pred HHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH--
Confidence 3322 123333334566655543222111112244555666677777778999999999998644322 23332
Q ss_pred ChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHhhhcC-CHHHHHHHHHHHHHHHh
Q 008465 464 AVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQQYLAEAKE---LGVMGPLVDLAQNG-TDRGKRKAAQLLERMSR 534 (564)
Q Consensus 464 ~i~~Lv~lL~~-~~~~~k~~A~~~L~~L~~~~~~~~~~~~~---~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~ 534 (564)
++..++.+.+. +++-+|..|+.+|..+-.+.+...-.+.. ......+..+.... ++.+|..|...|..+-.
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 56666666664 56889999999999887766644433332 23445555555544 45566666666655543
No 204
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.017 Score=58.35 Aligned_cols=49 Identities=20% Similarity=0.556 Sum_probs=40.3
Q ss_pred CCCccCcccccCCCCCE-----E---cCCCCcccHHHHHHHHHhC------CCCCCCCCCCCc
Q 008465 162 PDDFRCPISLELMKDPV-----I---VSTGQTYERSCIEKWLEAG------HRTCPKTQQTLT 210 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv-----~---~~cg~t~~r~ci~~~~~~~------~~~CP~~~~~l~ 210 (564)
-.+..|-||++...+++ . .+|.|+||..||.+|.... .+.||.||.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 46899999999888877 3 4699999999999999532 478999988754
No 205
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.021 Score=57.64 Aligned_cols=47 Identities=19% Similarity=0.459 Sum_probs=39.0
Q ss_pred CCCccCcccccCCC---CCEEcCCCCcccHHHHHHHHHhCC--CCCCCCCCC
Q 008465 162 PDDFRCPISLELMK---DPVIVSTGQTYERSCIEKWLEAGH--RTCPKTQQT 208 (564)
Q Consensus 162 p~~f~Cpic~~lm~---dPv~~~cg~t~~r~ci~~~~~~~~--~~CP~~~~~ 208 (564)
..-|.|||..+--. -|+.+.|||..++..+.+..+.|. +.||.|-..
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 34489999988665 478899999999999999988777 789999543
No 206
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.55 E-value=3.7 Score=43.03 Aligned_cols=187 Identities=15% Similarity=0.121 Sum_probs=119.4
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcccCC----ccchhhhccCChHHHHHHHhcCC-----H--HHHHHHHHHHHhccCCcc
Q 008465 304 LVGLLSTPDSRTQEHAVTALLNLSICE----DNKGSIVSSGAVPSIVHVLRIGS-----M--EARENAAATLFSLSVIDE 372 (564)
Q Consensus 304 Lv~lL~~~~~~i~~~A~~~L~nLs~~~----~~~~~i~~~g~i~~Lv~lL~~~~-----~--e~~~~a~~~L~~Ls~~~~ 372 (564)
+..+++..+.+-|..|+-....+.+.. .+|+.+.++=+.+.+-++|.+++ + -.+..++.+|..++..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 555666666666777777777776643 46788889988999999997642 2 245667788888887765
Q ss_pred hhhHhhhcCChHHHHHhhccC-CH------HHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcc-hHHHHHH
Q 008465 373 NKVTIGASGAIPPLVTLLSEG-TQ------RGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGG-MVDEALA 444 (564)
Q Consensus 373 ~~~~i~~~g~i~~Lv~lL~~~-~~------~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~al~ 444 (564)
-...=--.+.||.|.+.+..+ ++ .+..++-.+|..++..+.+...++..|+++.+.++-.-++.. -..-++.
T Consensus 96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~ 175 (698)
T KOG2611|consen 96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALK 175 (698)
T ss_pred hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence 322211125789999998654 22 367889999999999999999999999999999886443222 2233444
Q ss_pred HHHHhcC----ChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 008465 445 ILAILSS----HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 445 ~L~~L~~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
++..+.. .++.-..+.. .|..+..=+...+...|-..+.+|..+-.
T Consensus 176 Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 176 VLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4443322 2222222222 23333333333455667778888776543
No 207
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.53 E-value=0.69 Score=47.99 Aligned_cols=273 Identities=17% Similarity=0.099 Sum_probs=149.6
Q ss_pred hHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC-CH-HHHHHHHHHHHhcccCCccc
Q 008465 257 TKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP-DS-RTQEHAVTALLNLSICEDNK 333 (564)
Q Consensus 257 ~~i~~Lv~~L~s-~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~-~i~~~A~~~L~nLs~~~~~~ 333 (564)
+-+..++..|.+ .....|+.++-.|..-+. ++..|..+...|.+..+++.+... +. ..-..++.++.-++.+..+-
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 567888888884 345678888888888775 889999999999999999999553 33 33344445555556555555
Q ss_pred hhhhccCChHHHHHHHhcCCH-HHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhc---------cCCHHHHHHHHH
Q 008465 334 GSIVSSGAVPSIVHVLRIGSM-EARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS---------EGTQRGKKDAAT 403 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~-e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---------~~~~~~~~~a~~ 403 (564)
..+...+....++.+++.... ......- .....+-.++. ...+..+.+++. ......+..|+.
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 555566777777888871100 0000000 00000000000 011111111110 011223444555
Q ss_pred HHHHhhc---------------ccChhHHHHHcCChHHHHHhccC----C-------C-----cchHHHHHHHHHHhcCC
Q 008465 404 ALFNLCI---------------YQGNKGKAVRAGVVPTLMHLLTE----P-------G-----GGMVDEALAILAILSSH 452 (564)
Q Consensus 404 aL~nL~~---------------~~~~~~~i~~~g~i~~Lv~lL~~----~-------~-----~~~~~~al~~L~~L~~~ 452 (564)
+|-.++. .+.-|..+.+.|++..++.++.+ . . ......++.+|.+.+..
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 5555531 01124566778889999888752 1 1 12456788888888743
Q ss_pred -hhhHHHHHhc--CChHHHHHH-Hhc---CChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhc---------
Q 008465 453 -PEGKAAIGAA--EAVPVLVEV-IGN---GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQN--------- 516 (564)
Q Consensus 453 -~~~~~~i~~~--g~i~~Lv~l-L~~---~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~--------- 516 (564)
.+++...... +.++.+... +.. ..+.....++++|.|+..++|..+..+...++...+..+...
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 3445444433 333333333 322 224446788999999999998777777655544443332221
Q ss_pred -----CCHHHHHHHHHHHHHHHhhHH
Q 008465 517 -----GTDRGKRKAAQLLERMSRFIE 537 (564)
Q Consensus 517 -----~~~~~k~~A~~lL~~l~~~~~ 537 (564)
......--+..+|-||.++++
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeCc
Confidence 123344556666666665543
No 208
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.45 E-value=0.047 Score=38.66 Aligned_cols=41 Identities=24% Similarity=0.676 Sum_probs=31.4
Q ss_pred cCccccc--CCCCCEEcCCC-----CcccHHHHHHHHHh-CCCCCCCCC
Q 008465 166 RCPISLE--LMKDPVIVSTG-----QTYERSCIEKWLEA-GHRTCPKTQ 206 (564)
Q Consensus 166 ~Cpic~~--lm~dPv~~~cg-----~t~~r~ci~~~~~~-~~~~CP~~~ 206 (564)
.|-||++ .-.+|.+.||. +.+-+.|+.+|+.. ++.+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4788886 34577777875 56899999999975 456899884
No 209
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=94.38 E-value=0.85 Score=51.37 Aligned_cols=268 Identities=18% Similarity=0.205 Sum_probs=164.5
Q ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhh
Q 008465 258 KIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 336 (564)
Q Consensus 258 ~i~~Lv~~L~s-~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i 336 (564)
-+..+.+.+.. ..+.++..++..+.++++.-.. .....+.++.+..++.++...+++.|+..+.++...-.... =
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d 312 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-D 312 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-h
Confidence 34455555544 4567788888888888764333 66677899999999999999999999998888854221111 1
Q ss_pred hccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccC--h
Q 008465 337 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG--N 414 (564)
Q Consensus 337 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~--~ 414 (564)
......+.+++...++++.++...+.....|+..=.- ..+...-+++...+++....+++..++.-...++.+.. .
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~ 390 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASC 390 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccc
Confidence 1234678888888888999998888887777643111 33444567778888877666666666555555544322 3
Q ss_pred hHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 008465 415 KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 415 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~ 494 (564)
...+....++|.+-.+..+.+..++...+.....+...-. +..-+ .-..|.+...+++..+.++.+-...+..+-..+
T Consensus 391 ~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~ 468 (759)
T KOG0211|consen 391 YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN 468 (759)
T ss_pred ccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence 4455555667888777777777777666665555532111 11111 124555666666666777776665554443323
Q ss_pred HHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 008465 495 QQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 495 ~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
+..-........++.+.++..+...+++.+..+-+..+.
T Consensus 469 ~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la 507 (759)
T KOG0211|consen 469 DVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLA 507 (759)
T ss_pred CcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHH
Confidence 222233333445566666665555555555555554444
No 210
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.38 E-value=0.21 Score=41.14 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHh--cCChHHHHHHHhcC
Q 008465 398 KKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGA--AEAVPVLVEVIGNG 475 (564)
Q Consensus 398 ~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~ 475 (564)
++.++.+|...+..-.....-.-..++++++..+.+.+..++..|+.+|.|++..- +..+.. ..+...|..++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCC
Confidence 45566677766655444443334578999999999999999999999999998543 333332 24677788888888
Q ss_pred ChHHHHHHHHHHHHH
Q 008465 476 SPRNRENAAAVLVHL 490 (564)
Q Consensus 476 ~~~~k~~A~~~L~~L 490 (564)
++.+|..| ..|-++
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 88887766 455444
No 211
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.32 E-value=0.25 Score=45.94 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=62.5
Q ss_pred HHHHcCChHHHHHhccC---------CCcchHHHHHHHHHHhcCChhhHHHHHhc-CChHHHHHHHhcCChHHHHHHHHH
Q 008465 417 KAVRAGVVPTLMHLLTE---------PGGGMVDEALAILAILSSHPEGKAAIGAA-EAVPVLVEVIGNGSPRNRENAAAV 486 (564)
Q Consensus 417 ~i~~~g~i~~Lv~lL~~---------~~~~~~~~al~~L~~L~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~k~~A~~~ 486 (564)
.+++.||+..|+.+|.. .+......++.+|..+..+..|...++.. +++..|+..|.+.++.++..|+.+
T Consensus 102 ~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~lei 181 (187)
T PF06371_consen 102 EFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEI 181 (187)
T ss_dssp HH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 67788999999888754 12357788999999999999999988875 789999999999999999999999
Q ss_pred HHHHhc
Q 008465 487 LVHLCA 492 (564)
Q Consensus 487 L~~L~~ 492 (564)
|..+|.
T Consensus 182 L~~lc~ 187 (187)
T PF06371_consen 182 LAALCL 187 (187)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 999983
No 212
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.32 E-value=1.8 Score=44.23 Aligned_cols=172 Identities=15% Similarity=0.055 Sum_probs=128.4
Q ss_pred HhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh-hH-----HHHH--cCChHHHHHhccCCCcchHHHHHHHHH
Q 008465 376 TIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN-KG-----KAVR--AGVVPTLMHLLTEPGGGMVDEALAILA 447 (564)
Q Consensus 376 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~~-----~i~~--~g~i~~Lv~lL~~~~~~~~~~al~~L~ 447 (564)
.+...+.+..|+..|..-+-+.+++++....++.....+ +. .+.. ..++..|+.-- .++++.-.+-.+|.
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlR 148 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHH
Confidence 355668899999999999999999999999998876432 21 1221 23444444433 46777888899999
Q ss_pred HhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcC---CHHHHHHhhhcCCHHHHHH
Q 008465 448 ILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG---VMGPLVDLAQNGTDRGKRK 524 (564)
Q Consensus 448 ~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~Ll~~~~~~~k~~ 524 (564)
.+..++.....+.....+-.+.+.+..++-++...|..++..+-......+...+..+ ++.....|+.+++.-+|+.
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 9999988888888888899999999999999999999999997777776666666544 5788999999999999999
Q ss_pred HHHHHHHHHh---hHHHHHHHhhchhhH
Q 008465 525 AAQLLERMSR---FIEQQKQAQVQTESQ 549 (564)
Q Consensus 525 A~~lL~~l~~---~~~~~~~~~~~~~~~ 549 (564)
+..+|..|-- ......+.+++.+.+
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nL 256 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENL 256 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHH
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHH
Confidence 9999987753 335556666666554
No 213
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.31 E-value=0.74 Score=48.81 Aligned_cols=187 Identities=18% Similarity=0.168 Sum_probs=119.0
Q ss_pred hHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhh-CCCCHHHHHHHHHHHHhcccCCccch
Q 008465 257 TKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLL-STPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 257 ~~i~~Lv~~L~s-~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
..+..++....+ .++..+..+++.+..+...-+..- .-..++..+...+ ...+...+..++.++..+++ .
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K-----a 260 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITK-----A 260 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHH-----H
Confidence 466777777554 457778888888888875421111 0112333333333 33445555666666555542 2
Q ss_pred hhhc-----cCChHHHHHHHhcCCHHHHHHHHHHHHhccCC-cc--------hhhHhhhc----CChHHHHHhhccCCHH
Q 008465 335 SIVS-----SGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DE--------NKVTIGAS----GAIPPLVTLLSEGTQR 396 (564)
Q Consensus 335 ~i~~-----~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~--------~~~~i~~~----g~i~~Lv~lL~~~~~~ 396 (564)
.++. ...+..++.+|.+ +++...++..+.-|..+ +. +.+.+... ..+|.|++..+..+..
T Consensus 261 Lv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~ 338 (415)
T PF12460_consen 261 LVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE 338 (415)
T ss_pred HHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh
Confidence 2221 2245667777766 66778888888888766 22 12223333 4667777777776777
Q ss_pred HHHHHHHHHHHhhcccChhHHHHH-cCChHHHHHhccCCCcchHHHHHHHHHHhcCCh
Q 008465 397 GKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTEPGGGMVDEALAILAILSSHP 453 (564)
Q Consensus 397 ~~~~a~~aL~nL~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~ 453 (564)
.+...+.||.++..+-+.....-+ ..++|.|++-|..++.+++..++.+|..+....
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 888999999999887664332222 458889999998888899999999999887655
No 214
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.29 E-value=0.57 Score=47.27 Aligned_cols=168 Identities=15% Similarity=0.203 Sum_probs=109.2
Q ss_pred CCHHHHH-HhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc--hhh
Q 008465 299 GAIPLLV-GLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--NKV 375 (564)
Q Consensus 299 g~i~~Lv-~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~~~ 375 (564)
+.+..|+ ..+++.++.+|+.|+.+|+-.+.-+.. +. ...++.+...++.++.+++..|+.+++.+..... .-.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 4444444 677889999999999999998875431 11 2236778888877899999999999999865432 111
Q ss_pred -------HhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCC----CcchHHHHHH
Q 008465 376 -------TIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEP----GGGMVDEALA 444 (564)
Q Consensus 376 -------~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~al~ 444 (564)
.......++.+.+.+.+.+++++..|+..++.|...+.... ...++..|+-+..++ +..++ .++.
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~Lr-Q~L~ 177 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLR-QCLS 177 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHH-HHHH
Confidence 12223677888888888899999999999999877654433 123444454444332 23333 3444
Q ss_pred H-HHHhcCChhhHHHHHhcCChHHHHHHHhc
Q 008465 445 I-LAILSSHPEGKAAIGAAEAVPVLVEVIGN 474 (564)
Q Consensus 445 ~-L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~ 474 (564)
. +-..+......+..+....++.+-.+.+.
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 3 33556554444455555677777777764
No 215
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.16 E-value=1.6 Score=40.30 Aligned_cols=92 Identities=25% Similarity=0.251 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCC-hHHHHHhh
Q 008465 312 DSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGA-IPPLVTLL 390 (564)
Q Consensus 312 ~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~-i~~Lv~lL 390 (564)
++.+|.+++.+++.|+..-++ ++ ...++.+...|+++++.+|..|+.+|..|...+.-+. .|. +..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHH
Confidence 577899999999999764322 11 2347889999999999999999999999976543222 133 37788888
Q ss_pred ccCCHHHHHHHHHHHHHhhcc
Q 008465 391 SEGTQRGKKDAATALFNLCIY 411 (564)
Q Consensus 391 ~~~~~~~~~~a~~aL~nL~~~ 411 (564)
.++++.++..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999998876
No 216
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.15 E-value=0.95 Score=47.96 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=119.4
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCc----chHHHHHHHHHHhcCChhhH
Q 008465 381 GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGG----GMVDEALAILAILSSHPEGK 456 (564)
Q Consensus 381 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~al~~L~~L~~~~~~~ 456 (564)
.....+.+++.+++...+..|+..|..++.+..-...++...++..|..++.++.. ++...++.++..+-.+.-..
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 34567788888999988988999999999998888889999999999999977443 45555666655554332211
Q ss_pred HHHHhcCChHHHHHHHh--cCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHH-
Q 008465 457 AAIGAAEAVPVLVEVIG--NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS- 533 (564)
Q Consensus 457 ~~i~~~g~i~~Lv~lL~--~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~- 533 (564)
=..+...+|.....+.. .-+..+-..|+.+|-++..+++...+.+.+.--+..|+..++.++.++..+|..++..+.
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 01111223444444442 223456778889999999988888888889889999999999999999999999997665
Q ss_pred hhHHHHHHHhhc
Q 008465 534 RFIEQQKQAQVQ 545 (564)
Q Consensus 534 ~~~~~~~~~~~~ 545 (564)
+..+..++++..
T Consensus 243 ~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 243 KAPDDKRFEMAK 254 (713)
T ss_pred hCChHHHHHHHH
Confidence 444555555553
No 217
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=2.1 Score=49.56 Aligned_cols=221 Identities=17% Similarity=0.202 Sum_probs=127.2
Q ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHHh--CCHHHHHHhhCCCCHHHHHHHHHHHHhcccCC--ccchhhhccCChH
Q 008465 268 SGSPEDQRSAAGEIRLLAKRNADNRVAIAEA--GAIPLLVGLLSTPDSRTQEHAVTALLNLSICE--DNKGSIVSSGAVP 343 (564)
Q Consensus 268 s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~--~~~~~i~~~g~i~ 343 (564)
+.+..+|.++-+.|..++.. +......... .+-..|..-+++.+...+..++.+|..|-..- +....+ .-.|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 45788999999999998864 2222111111 12233344444455666777776666653311 222222 22344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccC----CcchhhHhhhcCChHHHHHhhccC--CHHHHHHH--HHHHHHhhcccChh
Q 008465 344 SIVHVLRIGSMEARENAAATLFSLSV----IDENKVTIGASGAIPPLVTLLSEG--TQRGKKDA--ATALFNLCIYQGNK 415 (564)
Q Consensus 344 ~Lv~lL~~~~~e~~~~a~~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a--~~aL~nL~~~~~~~ 415 (564)
-++-.++..+...+++|-.+|..+.. .+..... ....+...+..+..+ .......+ +.++..+.....+.
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444466688899999999988872 1111111 122556666666544 22222222 44555544433221
Q ss_pred H-HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 008465 416 G-KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAG 493 (564)
Q Consensus 416 ~-~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~ 493 (564)
. ...-.+.+..+..+|.+.+++++..|++.+..++. .|+....-.....++.++.++++.....+..+-..|-.|+..
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 1 12223556666667788899999999999998864 444443333334788899988888878888777777777663
No 218
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.06 E-value=1.3 Score=41.64 Aligned_cols=145 Identities=13% Similarity=0.074 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcC-----CHHHHHHHHHHHHhccCCcc--hhhHhhhcCChHHHHH
Q 008465 316 QEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG-----SMEARENAAATLFSLSVIDE--NKVTIGASGAIPPLVT 388 (564)
Q Consensus 316 ~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~e~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~ 388 (564)
..+|+.+|--++.+++.|..++++.+--.+-.+|... -.-+|-.+..++..|..++. ....+....++|.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 3466777777788999999998877555555555432 24578889999999988753 4455666799999999
Q ss_pred hhccCCHHHHHHHHHHHHHhhcccChhHHHHH--------cCChHHHHHhc-cCCCcchHHHHHHHHHHhcCChhhHHHH
Q 008465 389 LLSEGTQRGKKDAATALFNLCIYQGNKGKAVR--------AGVVPTLMHLL-TEPGGGMVDEALAILAILSSHPEGKAAI 459 (564)
Q Consensus 389 lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~--------~g~i~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~~~~~~i 459 (564)
++..+++-.+..|+.++..+..++.+-..+.+ ...+..++.-+ +.+...+...++.+-..|+..+..|..+
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 99999999999999988888777766443321 12333333333 3367788999999999999999888766
Q ss_pred H
Q 008465 460 G 460 (564)
Q Consensus 460 ~ 460 (564)
.
T Consensus 277 ~ 277 (315)
T COG5209 277 S 277 (315)
T ss_pred h
Confidence 4
No 219
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.032 Score=54.98 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=40.1
Q ss_pred CCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 163 DDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
++-.||||----...|+.||||.-|..||.+++- +.+.|-.|...+.
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence 6789999998888888999999999999999987 5677888866554
No 220
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.02 E-value=1.7 Score=42.05 Aligned_cols=197 Identities=19% Similarity=0.240 Sum_probs=126.1
Q ss_pred hhhHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhccc----
Q 008465 255 ERTKIEILLCKLTS--GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI---- 328 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s--~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~---- 328 (564)
+...++.|+..|.. ..+-++.+|..+|..+.. .+..+.|-++.+.+...+++....++..+-.
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 44678999998874 556788899999987752 2345666677766666666654444444311
Q ss_pred CC-ccchhhh--------ccCChHHHHHHHhcCCHH--HHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHH
Q 008465 329 CE-DNKGSIV--------SSGAVPSIVHVLRIGSME--ARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRG 397 (564)
Q Consensus 329 ~~-~~~~~i~--------~~g~i~~Lv~lL~~~~~e--~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 397 (564)
+. .+..... ..+-+..+-..|...+.. -|+.|...|.|+ +...+|..|++-+..++.-.
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADDSALF 203 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccchHHH
Confidence 11 0111111 112244444444443322 233343333333 23346777888888778888
Q ss_pred HHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccC--CCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcC
Q 008465 398 KKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE--PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG 475 (564)
Q Consensus 398 ~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~ 475 (564)
+..++.+++.| ...-+|+.|.+.|.+ .++.++..|+.+|+.+++. .+++.|.+++.+.
T Consensus 204 rhEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~ 263 (289)
T KOG0567|consen 204 RHEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDE 263 (289)
T ss_pred HHHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCc
Confidence 88888888855 334678888888865 6788999999999987764 3788899999988
Q ss_pred ChHHHHHHHHHHHHHhc
Q 008465 476 SPRNRENAAAVLVHLCA 492 (564)
Q Consensus 476 ~~~~k~~A~~~L~~L~~ 492 (564)
++-+++.|..+|--+-.
T Consensus 264 ~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 264 ERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88899988877765443
No 221
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.01 E-value=4.1 Score=43.65 Aligned_cols=111 Identities=18% Similarity=0.071 Sum_probs=69.8
Q ss_pred hHHHHHHHHHccCC----HHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCcc
Q 008465 257 TKIEILLCKLTSGS----PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN 332 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~----~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~ 332 (564)
...-.|++.+.++. ......-++.+..+.+++++.+..+. |.|-.-|++.-..++..+++++..++...-.
T Consensus 223 ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~ 297 (898)
T COG5240 223 MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEENVG 297 (898)
T ss_pred HHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhccC
Confidence 44556666665543 11122233445556666766655543 6777777777788888898888888753311
Q ss_pred chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchh
Q 008465 333 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK 374 (564)
Q Consensus 333 ~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~ 374 (564)
-+.+ ..++..|-.+|++.....|=.|.++|..|+...+.+
T Consensus 298 ~~~~--~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k 337 (898)
T COG5240 298 SQFV--DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK 337 (898)
T ss_pred HHHH--HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce
Confidence 1111 234566666778888888999999999998765433
No 222
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.039 Score=53.33 Aligned_cols=48 Identities=21% Similarity=0.481 Sum_probs=37.7
Q ss_pred cCccccc-CCCCCEE----cCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 008465 166 RCPISLE-LMKDPVI----VSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTA 213 (564)
Q Consensus 166 ~Cpic~~-lm~dPv~----~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 213 (564)
.||.|.. .+..|-. -+|||+.|-+|+...|..|...||-|+..+....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 4888873 4444432 2899999999999999999999999988776443
No 223
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.034 Score=56.05 Aligned_cols=59 Identities=31% Similarity=0.634 Sum_probs=46.0
Q ss_pred ccCcccccCCCCCE-----EcCCCCcccHHHHHHHHHh-CCCCCCCCCCCCcCCCCCchHHHHHH
Q 008465 165 FRCPISLELMKDPV-----IVSTGQTYERSCIEKWLEA-GHRTCPKTQQTLTSTAVTPNYVLRSL 223 (564)
Q Consensus 165 f~Cpic~~lm~dPv-----~~~cg~t~~r~ci~~~~~~-~~~~CP~~~~~l~~~~l~~n~~l~~~ 223 (564)
-.||||++-..-|+ ++.|||-|-..||++|+.+ ....||.|..+-....+.+-+.+|..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 57999998776553 4689999999999999953 23569999888777777777666554
No 224
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=2.2 Score=50.60 Aligned_cols=207 Identities=16% Similarity=0.144 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHH
Q 008465 270 SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVL 349 (564)
Q Consensus 270 ~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL 349 (564)
.|..+.-|+..+..+++..-+. ..-.-.-.||.|.++=.+++..+|.....+...|..+..+...-.-+.+++.|+.-|
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~k-l~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l 1048 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEK-LEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNL 1048 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHh-hhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777543221 111112478888888889999998754444444554433322222245666677777
Q ss_pred hcCCHHHHHHHHHHHHhccCCcchhhHhhhc-CChHHHHHhhccCCHHHHH---HHHHHHHHhhcc-----cChhHHHHH
Q 008465 350 RIGSMEARENAAATLFSLSVIDENKVTIGAS-GAIPPLVTLLSEGTQRGKK---DAATALFNLCIY-----QGNKGKAVR 420 (564)
Q Consensus 350 ~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~---~a~~aL~nL~~~-----~~~~~~i~~ 420 (564)
.+..+.+|+.++-+|..|-...++-...-.. .....+.+.+++-.+.+++ .++.+|..|+.. +..+.+-+-
T Consensus 1049 t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l 1128 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL 1128 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH
Confidence 7778999999999999998775543322111 3444455555554555554 456667766542 111222222
Q ss_pred cCChHHHHHh-ccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCCh
Q 008465 421 AGVVPTLMHL-LTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSP 477 (564)
Q Consensus 421 ~g~i~~Lv~l-L~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 477 (564)
..++|.|+.- +.+.-++++..++.++..|+......-.-.-...||.|++....-++
T Consensus 1129 ~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~ 1186 (1702)
T KOG0915|consen 1129 DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEP 1186 (1702)
T ss_pred HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccch
Confidence 2334444321 11345688899999999998654331111111345555555544333
No 225
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.76 E-value=0.7 Score=45.00 Aligned_cols=95 Identities=16% Similarity=0.255 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHhc-CChhhHHHHHhcCChHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhh
Q 008465 438 MVDEALAILAILS-SHPEGKAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQ 515 (564)
Q Consensus 438 ~~~~al~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~ 515 (564)
....|+.+|.-++ -+|..+..+.+...+..|+.+|. ...+.++..++.+|..+...++.+...+.+.+++..+..+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 3556778888666 57788888889999999999995 456889999999999999999999999999999999999998
Q ss_pred cC--CHHHHHHHHHHHHHH
Q 008465 516 NG--TDRGKRKAAQLLERM 532 (564)
Q Consensus 516 ~~--~~~~k~~A~~lL~~l 532 (564)
+. +.++|-|..+.|...
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 75 688888888866544
No 226
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.75 E-value=0.023 Score=62.73 Aligned_cols=50 Identities=20% Similarity=0.618 Sum_probs=37.7
Q ss_pred CCCCccCcccccCCC--C---CE--EcCCCCcccHHHHHHHHHh-CCCCCCCCCCCCc
Q 008465 161 IPDDFRCPISLELMK--D---PV--IVSTGQTYERSCIEKWLEA-GHRTCPKTQQTLT 210 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~--d---Pv--~~~cg~t~~r~ci~~~~~~-~~~~CP~~~~~l~ 210 (564)
..+.-.|+||..++. | |- ...|.|-|..+|+.+||.. ++.+||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 344557999988764 2 22 2357789999999999985 5679999997664
No 227
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.73 E-value=3.6 Score=42.94 Aligned_cols=221 Identities=13% Similarity=0.114 Sum_probs=131.3
Q ss_pred HHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhc--ccCCccchhhh--------ccCChHHH
Q 008465 276 SAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNL--SICEDNKGSIV--------SSGAVPSI 345 (564)
Q Consensus 276 ~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nL--s~~~~~~~~i~--------~~g~i~~L 345 (564)
.|++.|..+....+..-..+.+.|++..+++.|+.+-....+. .-..+- ....+.+.... +.+.+..+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~l 80 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSL 80 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCcccccccccccCHHHHHHHHHH
Confidence 4667777777666677778889999999999886532111111 000000 00011111111 12233333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccC-Ccch---hhHhhh-cCChHHHHHhhccC---CHHHHHHHHHHHHHhhcccChhH-
Q 008465 346 VHVLRIGSMEARENAAATLFSLSV-IDEN---KVTIGA-SGAIPPLVTLLSEG---TQRGKKDAATALFNLCIYQGNKG- 416 (564)
Q Consensus 346 v~lL~~~~~e~~~~a~~~L~~Ls~-~~~~---~~~i~~-~g~i~~Lv~lL~~~---~~~~~~~a~~aL~nL~~~~~~~~- 416 (564)
++++ ..+.. .... -..+.+ ...+..|..++++. .+.+...|+..+..+..+++...
T Consensus 81 Lk~l---------------~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~ 145 (379)
T PF06025_consen 81 LKFL---------------SHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFS 145 (379)
T ss_pred HHHH---------------HHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhH
Confidence 3332 22222 2211 112333 34455566666665 46778889999998887766555
Q ss_pred HHHHcCChHHHHHhcc-C---CCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCC--hHHHH-HHH----H
Q 008465 417 KAVRAGVVPTLMHLLT-E---PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS--PRNRE-NAA----A 485 (564)
Q Consensus 417 ~i~~~g~i~~Lv~lL~-~---~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~k~-~A~----~ 485 (564)
.+.+.|+++.+++.+. . ++.++....-.+|..||-+..|.+.+.+.+.++.+++++.+.. ...+. ..+ .
T Consensus 146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~ 225 (379)
T PF06025_consen 146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGN 225 (379)
T ss_pred HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHH
Confidence 5568999999999987 3 5567777777888899999999999999999999999997643 11121 222 3
Q ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHhh
Q 008465 486 VLVHLCAGDQQYLAEAKELGVMGPLVDLA 514 (564)
Q Consensus 486 ~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll 514 (564)
.+-.|.++.|.-+..+++. ++..+-++.
T Consensus 226 ~~DEL~RH~p~Lk~~i~~~-ii~~l~~l~ 253 (379)
T PF06025_consen 226 SFDELMRHHPSLKPDIIDA-IIKILDRLV 253 (379)
T ss_pred HHHHHHccCHHHHHHHHHH-HHHHHHHHH
Confidence 3344666776666555553 333333333
No 228
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.71 E-value=0.073 Score=37.87 Aligned_cols=44 Identities=18% Similarity=0.426 Sum_probs=23.3
Q ss_pred ccCcccccCCCCCEE-cCCCCc--ccHHHHHHHH-HhCCCCCCCCCCC
Q 008465 165 FRCPISLELMKDPVI-VSTGQT--YERSCIEKWL-EAGHRTCPKTQQT 208 (564)
Q Consensus 165 f~Cpic~~lm~dPv~-~~cg~t--~~r~ci~~~~-~~~~~~CP~~~~~ 208 (564)
+.||++...|.-||. ..|.|. |+...+-... ..+...||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 789999999999997 489886 5543333322 3456789999764
No 229
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.69 E-value=0.019 Score=44.15 Aligned_cols=47 Identities=21% Similarity=0.590 Sum_probs=22.7
Q ss_pred CccCcccccCCC----CCEEc----CCCCcccHHHHHHHHHh--CC--------CCCCCCCCCCc
Q 008465 164 DFRCPISLELMK----DPVIV----STGQTYERSCIEKWLEA--GH--------RTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm~----dPv~~----~cg~t~~r~ci~~~~~~--~~--------~~CP~~~~~l~ 210 (564)
+..|+||..... .|+.+ .|+.+|-..|+.+||.. +. .+||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 567999998654 24432 58899999999999973 11 25999988775
No 230
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=93.58 E-value=2.1 Score=48.24 Aligned_cols=267 Identities=15% Similarity=0.092 Sum_probs=152.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhh
Q 008465 259 IEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV 337 (564)
Q Consensus 259 i~~Lv~~L~s~~~~~~~~al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~ 337 (564)
++.....++...++.+..++.....++.. +...+..+....++|.+-.+..+.+..++...+....+++--.. +..-
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t- 434 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERT- 434 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcC-
Confidence 45556666655666666666666666532 33344556666678888888888888888776666666543211 1111
Q ss_pred ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhH
Q 008465 338 SSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG 416 (564)
Q Consensus 338 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 416 (564)
-.-..+.++..+++..++++.+....+..+-... ..........-+|.+..+.....-+++...+..+.-++.... .
T Consensus 435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~ 512 (759)
T KOG0211|consen 435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--V 512 (759)
T ss_pred ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--h
Confidence 1334666777777878888888887765553332 233344445677777777766667777777777777766544 2
Q ss_pred HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH
Q 008465 417 KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ 496 (564)
Q Consensus 417 ~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~ 496 (564)
.+.....-+.+...+.+....+++.|...|..++..-. ..+-. ...++.++.+...++-..|...+..+..|+. .
T Consensus 513 ~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~-~~~i~k~L~~~~q~~y~~R~t~l~si~~la~---v 587 (759)
T KOG0211|consen 513 EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWAR-LEEIPKLLAMDLQDNYLVRMTTLFSIHELAE---V 587 (759)
T ss_pred HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhH-HHhhHHHHHHhcCcccchhhHHHHHHHHHHH---H
Confidence 23332333333444444445677777777776654322 22221 1245666555554444444433333332221 1
Q ss_pred HHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 497 YLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 497 ~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
.-+.+....+++.+..+..+..+.+|-.++..|.-+.+
T Consensus 588 ~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 588 LGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred hccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 11222333466777777777777788777777766654
No 231
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.39 E-value=2.5 Score=42.53 Aligned_cols=169 Identities=17% Similarity=0.167 Sum_probs=110.2
Q ss_pred hHHHHHH-HHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhccc-CC-cc-
Q 008465 257 TKIEILL-CKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI-CE-DN- 332 (564)
Q Consensus 257 ~~i~~Lv-~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~-~~-~~- 332 (564)
+.+..|+ ..+.+.++.+|..|+++|...+--+.+.. ...++.+...++.++..++..|+.++..+.. +. ..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4455555 67788999999999999999876443211 1235778888877899999999999998854 21 11
Q ss_pred ----c--hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccC----CHHHHHHHH
Q 008465 333 ----K--GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG----TQRGKKDAA 402 (564)
Q Consensus 333 ----~--~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~a~ 402 (564)
. ........+..+.+.|.+.+++++..|+..+..|-..+.... ...++..|+-+--++ +.+.+..-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 1 112235677888889999999999999999999875543222 123444444443332 344444434
Q ss_pred HHHHHhhcccChhHHHHHcCChHHHHHhccC
Q 008465 403 TALFNLCIYQGNKGKAVRAGVVPTLMHLLTE 433 (564)
Q Consensus 403 ~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~ 433 (564)
..+-..+.........+..++++.+-.+...
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 4444566655555566666777777776654
No 232
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=93.39 E-value=0.03 Score=56.03 Aligned_cols=46 Identities=28% Similarity=0.514 Sum_probs=39.1
Q ss_pred cCcccccCCCCCEEcCCCCcccHHHHHHHHHh-CCCCCCCCCCCCcC
Q 008465 166 RCPISLELMKDPVIVSTGQTYERSCIEKWLEA-GHRTCPKTQQTLTS 211 (564)
Q Consensus 166 ~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~-~~~~CP~~~~~l~~ 211 (564)
.|-||-+-=+|--+-+|||-.|-.|+..|... +..+||.||..+.-
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 58899998888667799999999999999964 46899999987753
No 233
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.36 E-value=0.26 Score=44.58 Aligned_cols=145 Identities=21% Similarity=0.189 Sum_probs=96.0
Q ss_pred CChHHHHHHHhc--CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhH-
Q 008465 340 GAVPSIVHVLRI--GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG- 416 (564)
Q Consensus 340 g~i~~Lv~lL~~--~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~- 416 (564)
..++.++..|.. .++++|..+.-++..+- +..+... ..-+-+.+-.++..++.+....++.++..|-.......
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 345666666654 46788888888887773 2223222 22233334444444444466777777777766555433
Q ss_pred HHH-HcCChHHHHHhcc--CCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhc-CChH-HHHHHHHHHH
Q 008465 417 KAV-RAGVVPTLMHLLT--EPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN-GSPR-NRENAAAVLV 488 (564)
Q Consensus 417 ~i~-~~g~i~~Lv~lL~--~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~-~k~~A~~~L~ 488 (564)
.+. ..|.++.++.+.. ..+..++..++.+|..=|.....|..+.+. +++.|-++++. .++. +|..|+-+|.
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHh
Confidence 333 7799999999998 677888889999999888888888777764 79999999964 4455 6777776654
No 234
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.34 E-value=3 Score=45.23 Aligned_cols=133 Identities=21% Similarity=0.269 Sum_probs=85.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCC-ccchh
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE-DNKGS 335 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~-~~~~~ 335 (564)
.....++...+ ++...+.-|+..|....+..|+.... ++..++.|..++|..+|..|+..|-.++.+. +....
T Consensus 23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k 96 (556)
T PF05918_consen 23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK 96 (556)
T ss_dssp HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence 34455555554 57889999999999999887775443 5688999999999999999999999999864 34444
Q ss_pred hhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhc---cCCHHHHHHHHHHHHH
Q 008465 336 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS---EGTQRGKKDAATALFN 407 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~a~~aL~n 407 (564)
+ ++.|+++|.+.++.-...+-.+|..|-..+ ..+.+..|...+. ++++.+++.++..|..
T Consensus 97 v-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 97 V-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp H-----HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 4 678899998887554444444554443221 1245566666665 6778888888877753
No 235
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=6.5 Score=45.24 Aligned_cols=150 Identities=21% Similarity=0.202 Sum_probs=90.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC-CHHHHHHHHHHHHhcccCCccchh
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDNKGS 335 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~i~~~A~~~L~nLs~~~~~~~~ 335 (564)
..++.|++.|++.+..++..|++.+..++...|. .+++ .+|...+.++... +...-..|+.+|+.|+...--.-.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 5667777777888899999999999999987772 3332 2455556655543 345556888889888752211000
Q ss_pred hhccCChHHHHHHHhc--------CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHH-----HhhccCCHHHHHHHH
Q 008465 336 IVSSGAVPSIVHVLRI--------GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLV-----TLLSEGTQRGKKDAA 402 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~--------~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv-----~lL~~~~~~~~~~a~ 402 (564)
. -..++|.|+.-|.- ....+|..|+.+++.++...+... + .+++..|. .-+-+.+..+++.|.
T Consensus 417 ~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~-l--~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 417 L-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSD-L--KPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred H-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhh-h--hHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 0 02455666655521 124589999999999986543221 0 01222222 223345667888888
Q ss_pred HHHHHhhcccCh
Q 008465 403 TALFNLCIYQGN 414 (564)
Q Consensus 403 ~aL~nL~~~~~~ 414 (564)
.|+........|
T Consensus 493 AAlqE~VGR~~n 504 (1133)
T KOG1943|consen 493 AALQENVGRQGN 504 (1133)
T ss_pred HHHHHHhccCCC
Confidence 888866554443
No 236
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.02 E-value=0.22 Score=42.34 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=58.7
Q ss_pred CChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 008465 463 EAVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 463 g~i~~Lv~lL~~-~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
.++..|+.+|.. .++.+..-|+.=|..++...|..+..+-+.|+-..++.|+.+++++++..|..+++-+-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 368899999943 45777777888899999988888888889999999999999999999999999887654
No 237
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=93.01 E-value=0.099 Score=40.12 Aligned_cols=45 Identities=29% Similarity=0.587 Sum_probs=34.0
Q ss_pred ccCcccccCCC----CCEEc-CCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 165 FRCPISLELMK----DPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 165 f~Cpic~~lm~----dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
-.||-|+--|. =||.- .|.|.|-..||.+|++. ...||.++++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 45777776552 14443 79999999999999984 667999998764
No 238
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=92.98 E-value=0.095 Score=49.96 Aligned_cols=45 Identities=31% Similarity=0.420 Sum_probs=37.3
Q ss_pred CccCcccccCCCCCEE-cCCCCcccHHHHHHHHHh-CCCCCCCCCCC
Q 008465 164 DFRCPISLELMKDPVI-VSTGQTYERSCIEKWLEA-GHRTCPKTQQT 208 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~-~~cg~t~~r~ci~~~~~~-~~~~CP~~~~~ 208 (564)
+++||++......||+ ..|||.|+|..|+..+.. -...||+-+..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 5899999999999998 589999999999998863 13469985554
No 239
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.89 E-value=3.7 Score=42.92 Aligned_cols=184 Identities=13% Similarity=0.111 Sum_probs=113.8
Q ss_pred hHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCCccch
Q 008465 257 TKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 257 ~~i~~Lv~~L~s~-~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
..+..++..+..+ ..+.+..|+..|..+..++.+.-+.=.-..++..++..|.. .+..++..|+++|..++.+..
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~--- 362 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP--- 362 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch---
Confidence 3455556666554 56788889998888776665443332223355678888887 788899999999999975432
Q ss_pred hhhccC---ChHHHHHHHhcCCHHHHHHHH-HHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 008465 335 SIVSSG---AVPSIVHVLRIGSMEARENAA-ATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI 410 (564)
Q Consensus 335 ~i~~~g---~i~~Lv~lL~~~~~e~~~~a~-~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 410 (564)
..+... +|..+++.-++...++...|. .++.-++..++.+ .|..+..++.+.+...-..++..+..|+.
T Consensus 363 ~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 363 ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFE 435 (516)
T ss_pred HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHh
Confidence 222222 333344443444444444444 4445555444432 23445555555666655666667777765
Q ss_pred ccChhHH-HHHcCChHHHHHhccCCCcchHHHHHHHHHHhc
Q 008465 411 YQGNKGK-AVRAGVVPTLMHLLTEPGGGMVDEALAILAILS 450 (564)
Q Consensus 411 ~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~ 450 (564)
.-....- .+-..+.|.+++-..+.+..++..|+.+|..+.
T Consensus 436 ~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 436 RLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 4333221 223578889999998888999999999988654
No 240
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.042 Score=41.74 Aligned_cols=49 Identities=31% Similarity=0.540 Sum_probs=35.0
Q ss_pred CCCccCcccccCCCC-CEEc-CCCCcccHHHHHHHHHh--CCCCCCCCCCCCc
Q 008465 162 PDDFRCPISLELMKD-PVIV-STGQTYERSCIEKWLEA--GHRTCPKTQQTLT 210 (564)
Q Consensus 162 p~~f~Cpic~~lm~d-Pv~~-~cg~t~~r~ci~~~~~~--~~~~CP~~~~~l~ 210 (564)
|-+-.||-|.-.=.| |.+. .|.|.|-..||.+|+.. +...||+||+...
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 334566666655544 3333 79999999999999973 3468999998764
No 241
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=92.77 E-value=0.16 Score=48.28 Aligned_cols=119 Identities=24% Similarity=0.257 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcccCCc---cchhhhccCChHHHHHHHhcC---------------CHHHHHHHHHHHHhccCCcchhh
Q 008465 314 RTQEHAVTALLNLSICED---NKGSIVSSGAVPSIVHVLRIG---------------SMEARENAAATLFSLSVIDENKV 375 (564)
Q Consensus 314 ~i~~~A~~~L~nLs~~~~---~~~~i~~~g~i~~Lv~lL~~~---------------~~e~~~~a~~~L~~Ls~~~~~~~ 375 (564)
.+|++|+.+|.|++..-+ .-+.|. --+++.+++..-.. ...-+..|..+|..|+..+.|..
T Consensus 81 ~lREnalV~laNisgqLdLs~~~e~I~-~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD 159 (257)
T PF12031_consen 81 QLRENALVTLANISGQLDLSDYPESIA-RPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD 159 (257)
T ss_pred HHhhcceEeeeeeeeeeecccCchHHH-HHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence 467888888888875321 122221 11233333333111 12358899999999999999998
Q ss_pred HhhhcCChH-------HHHHhhc-cCCHHHHHHHHHHHHHhhcccChhHHHH--HcCChHHHHHhccC
Q 008465 376 TIGASGAIP-------PLVTLLS-EGTQRGKKDAATALFNLCIYQGNKGKAV--RAGVVPTLMHLLTE 433 (564)
Q Consensus 376 ~i~~~g~i~-------~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~i~--~~g~i~~Lv~lL~~ 433 (564)
.+...+-+. .|++++. .+++-.++-|+..|.||+..++.....+ +.++|..|+.++.+
T Consensus 160 liLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~ 227 (257)
T PF12031_consen 160 LILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIED 227 (257)
T ss_pred eeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHH
Confidence 888775444 4444443 3578889999999999999988766444 67899999999964
No 242
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=0.071 Score=53.30 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=38.0
Q ss_pred CCCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 158 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 158 ~~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
....|..-.|-||.+-..+.+.++|||+.| |+.-.. ....||.|++.+.
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIR 347 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHHH
Confidence 335667788999999999999999999988 654332 3567999988654
No 243
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.69 E-value=0.86 Score=42.25 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChh-hHHHHHHhCCHHHHHHhhCC---------CCHHHHHHHHHHHHh
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNAD-NRVAIAEAGAIPLLVGLLST---------PDSRTQEHAVTALLN 325 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~~---------~~~~i~~~A~~~L~n 325 (564)
......+++.+.+..... +.+..|+..-..++. --..|++.||+..|+.+|.. .+...+..++.+|..
T Consensus 65 ~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka 142 (187)
T PF06371_consen 65 KSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA 142 (187)
T ss_dssp CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence 356778888887765433 555555554443333 34467788999999998853 356788889999999
Q ss_pred cccCCccchhhh-ccCChHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 008465 326 LSICEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLS 368 (564)
Q Consensus 326 Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls 368 (564)
+.....+...++ ..+++..|+..|.+.+..++..++.+|..++
T Consensus 143 l~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 143 LMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 887777766666 5899999999999999999999999998775
No 244
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.57 E-value=0.026 Score=61.16 Aligned_cols=48 Identities=21% Similarity=0.493 Sum_probs=39.4
Q ss_pred CCccCcccccCCCCCEE---cCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008465 163 DDFRCPISLELMKDPVI---VSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~---~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
..-.||+|..-+.|-.+ ..|+|-||..||..|.. ...+||.|+..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence 45689999887776554 47999999999999987 57899999988763
No 245
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.45 E-value=1.1 Score=43.77 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhccc-CCccchhhhccCChHHHHHHHhc
Q 008465 274 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSI-CEDNKGSIVSSGAVPSIVHVLRI 351 (564)
Q Consensus 274 ~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~ 351 (564)
...|+..|.-++--++..|..+.....+..|+++|.. .++.++..++.+|..+.. ++.|...+-+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 4556777777777789999999999999999999954 678999999988888755 56778888899999999999987
Q ss_pred C--CHHHHHHHHHHH-Hhcc
Q 008465 352 G--SMEARENAAATL-FSLS 368 (564)
Q Consensus 352 ~--~~e~~~~a~~~L-~~Ls 368 (564)
. +.+++-..+..| ++|.
T Consensus 188 ~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccHHHhHHHHHHHHHHHc
Confidence 6 567877777665 4444
No 246
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.42 E-value=5.8 Score=41.39 Aligned_cols=96 Identities=13% Similarity=0.206 Sum_probs=76.5
Q ss_pred hCCHHHHHHhhCCC---CHHHHHHHHHHHHhcccCCcc-chhhhccCChHHHHHHHh-cC---CHHHHHHHHHHHHhccC
Q 008465 298 AGAIPLLVGLLSTP---DSRTQEHAVTALLNLSICEDN-KGSIVSSGAVPSIVHVLR-IG---SMEARENAAATLFSLSV 369 (564)
Q Consensus 298 ~g~i~~Lv~lL~~~---~~~i~~~A~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~lL~-~~---~~e~~~~a~~~L~~Ls~ 369 (564)
......|...++.. .+.+-..|+.++..+..+++. -..+.++|.++.+++.+. .+ +.++....-.+|..||-
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 34455666666664 567888889999988776655 667779999999999998 54 57788778889999999
Q ss_pred CcchhhHhhhcCChHHHHHhhccC
Q 008465 370 IDENKVTIGASGAIPPLVTLLSEG 393 (564)
Q Consensus 370 ~~~~~~~i~~~g~i~~Lv~lL~~~ 393 (564)
+....+.+.+.+.++.+++++.+.
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCH
Confidence 999999999999999999887653
No 247
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=5.3 Score=44.21 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=21.9
Q ss_pred CChHHHHHhccCCCcchHHHHHHHHHHhcCC
Q 008465 422 GVVPTLMHLLTEPGGGMVDEALAILAILSSH 452 (564)
Q Consensus 422 g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 452 (564)
|.+-.++.+|..++.+++..++.+...|+..
T Consensus 317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 3444556677778888888888887777654
No 248
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.42 E-value=0.07 Score=38.17 Aligned_cols=46 Identities=11% Similarity=0.171 Sum_probs=35.3
Q ss_pred CccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCC
Q 008465 164 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTST 212 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 212 (564)
+.-|-.|...-...++++|||..|+.|..-+ .-.-||.|+.++...
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCC
Confidence 3456667777778889999999999996543 345699999988654
No 249
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=0.076 Score=53.22 Aligned_cols=51 Identities=24% Similarity=0.534 Sum_probs=35.5
Q ss_pred CCccCcccccCCCCCE----EcCCCCcccHHHHHHHHHh--CCCCCCCCCCCCcCCC
Q 008465 163 DDFRCPISLELMKDPV----IVSTGQTYERSCIEKWLEA--GHRTCPKTQQTLTSTA 213 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv----~~~cg~t~~r~ci~~~~~~--~~~~CP~~~~~l~~~~ 213 (564)
---.|.||-+..-.-- +-.|||+|.-.|+.+||.- .+++||.|+-.+....
T Consensus 3 i~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~ 59 (465)
T KOG0827|consen 3 IMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERH 59 (465)
T ss_pred ccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccccee
Confidence 3457999955442111 2359999999999999983 2468999985555333
No 250
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=92.35 E-value=13 Score=42.41 Aligned_cols=178 Identities=19% Similarity=0.155 Sum_probs=101.0
Q ss_pred hhhhHHHHHHHHHccC-----CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhC----CCC----HHHHHHHH
Q 008465 254 AERTKIEILLCKLTSG-----SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS----TPD----SRTQEHAV 320 (564)
Q Consensus 254 ~~~~~i~~Lv~~L~s~-----~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~----~~~----~~i~~~A~ 320 (564)
++.+++..++..+.+. ..+.-...++.|+..++ -..||..+.+.|+++.|++.|. .+. ..+-+..+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 3457788888888752 22333344555555554 6899999999999999998774 333 56666666
Q ss_pred HHHHhcccCCcc-----chhhhccC--------ChHHHHHHHhcC----CHHHHHHHHHHHHhccCCcchhhHhhhcCCh
Q 008465 321 TALLNLSICEDN-----KGSIVSSG--------AVPSIVHVLRIG----SMEARENAAATLFSLSVIDENKVTIGASGAI 383 (564)
Q Consensus 321 ~~L~nLs~~~~~-----~~~i~~~g--------~i~~Lv~lL~~~----~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i 383 (564)
.++-.+..+... -....... -+..+++.+.+. ++.+....+++|-.|+..++.+....-. .+
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~F 271 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-HF 271 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-HH
Confidence 555555332111 00111111 255666666554 5788889999999999876544332211 11
Q ss_pred HHHHHhhccC---CHHHHHHHHHHHHHhhcc----c---ChhHHHHHcCChHHHHHhccCC
Q 008465 384 PPLVTLLSEG---TQRGKKDAATALFNLCIY----Q---GNKGKAVRAGVVPTLMHLLTEP 434 (564)
Q Consensus 384 ~~Lv~lL~~~---~~~~~~~a~~aL~nL~~~----~---~~~~~i~~~g~i~~Lv~lL~~~ 434 (564)
.+.+++=.-+ .+.- ...+..++.++.. . .-|..+++.|++...++.|...
T Consensus 272 ~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~ 331 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH 331 (802)
T ss_pred HHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Confidence 2222211111 1111 1224444444432 1 2255788999999998888653
No 251
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.26 E-value=0.094 Score=36.64 Aligned_cols=43 Identities=26% Similarity=0.464 Sum_probs=21.6
Q ss_pred CcccccCCC--CCEEc--CCCCcccHHHHHHHHHhCCCCCCCCCCCC
Q 008465 167 CPISLELMK--DPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTL 209 (564)
Q Consensus 167 Cpic~~lm~--dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l 209 (564)
||+|.+.|. |--.. +||+-+|+.|..+-...++..||-|+.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 788888772 22233 67999999998887765678899998763
No 252
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.21 E-value=0.094 Score=51.49 Aligned_cols=49 Identities=18% Similarity=0.370 Sum_probs=36.2
Q ss_pred ccCcccccCCC--CCEE--cCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 008465 165 FRCPISLELMK--DPVI--VSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTA 213 (564)
Q Consensus 165 f~Cpic~~lm~--dPv~--~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 213 (564)
-.||+|.+.|. |--. .+||...|+.|.......-+..||.||.......
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 34999999885 3333 4689999999977655545678999999877544
No 253
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.90 E-value=9 Score=42.70 Aligned_cols=202 Identities=17% Similarity=0.199 Sum_probs=134.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhc-ccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhc
Q 008465 302 PLLVGLLSTPDSRTQEHAVTALLNL-SICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS 380 (564)
Q Consensus 302 ~~Lv~lL~~~~~~i~~~A~~~L~nL-s~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~ 380 (564)
.-|..+|.+........|+.-+.++ +...+ . ....|.+|+...+.+.|++.-.---|..-+....+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-v-----S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-V-----SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-H-----HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 4577889887777777777666555 44333 2 234688888888999999887766665555443332222
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcC-ChhhHHHH
Q 008465 381 GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAI 459 (564)
Q Consensus 381 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i 459 (564)
-|..+-+-|+++++.++-.|+++|..+ |.-++..=++-++-+...++.+.++..|+.++-.|-. .++.+.++
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 456677778899999999888888754 3333332233344455667888999888888887744 44545443
Q ss_pred HhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHH
Q 008465 460 GAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLL 529 (564)
Q Consensus 460 ~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL 529 (564)
+..+-.+|.+.++.+.-.|+.+.-.+|- +..+.+- +-...|+.++.+-+...+--...+|
T Consensus 182 -----~e~I~~LLaD~splVvgsAv~AF~evCP---erldLIH--knyrklC~ll~dvdeWgQvvlI~mL 241 (968)
T KOG1060|consen 182 -----EEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLIH--KNYRKLCRLLPDVDEWGQVVLINML 241 (968)
T ss_pred -----HHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHhh--HHHHHHHhhccchhhhhHHHHHHHH
Confidence 3445556788889999998888877775 3333332 3467788888877777776655544
No 254
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.87 E-value=0.16 Score=31.97 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=24.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhccc
Q 008465 301 IPLLVGLLSTPDSRTQEHAVTALLNLSI 328 (564)
Q Consensus 301 i~~Lv~lL~~~~~~i~~~A~~~L~nLs~ 328 (564)
+|.++++++++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999998864
No 255
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.11 Score=51.93 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=38.6
Q ss_pred CccCcccccCCCCCEEcCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 164 DFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.-.|-||+.--+|-+++||-|. .|..|-.... -.+..||.||+++.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchH
Confidence 4789999999999999999995 7999976644 34667999999875
No 256
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=91.72 E-value=1.1 Score=50.29 Aligned_cols=213 Identities=15% Similarity=0.100 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc---hhh------Hhhh---
Q 008465 312 DSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE---NKV------TIGA--- 379 (564)
Q Consensus 312 ~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~---~~~------~i~~--- 379 (564)
..+.++.|+..|.-+.+.--.|..--...+...++..|+.+ ++-..++.++.-+..+.. .+. .+..
T Consensus 787 s~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRf 864 (1030)
T KOG1967|consen 787 SLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRF 864 (1030)
T ss_pred CcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHH
Confidence 44556666666655532100011111122344556666553 334455555555554432 111 1222
Q ss_pred -cCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHH--HcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhh-
Q 008465 380 -SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV--RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEG- 455 (564)
Q Consensus 380 -~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~- 455 (564)
..++|.|++.+.+.+...+-.-+.+|.++..+-+. ..+. -....|.|++.|+-++..++..++.++.-+......
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 27889999998876777788888899988775443 3333 245788888999889999999999988866543322
Q ss_pred HHHHHhcCChHHHHHHHhcCC---hHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHH
Q 008465 456 KAAIGAAEAVPVLVEVIGNGS---PRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQL 528 (564)
Q Consensus 456 ~~~i~~~g~i~~Lv~lL~~~~---~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~l 528 (564)
...-++ -.+|.++.+=.+.+ -.+|+.|...|..|...-|...-.-....++..|...+.+..--+|+.|..+
T Consensus 944 ~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 QTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred chHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 222222 25777776665544 5689999999999988555333222333477788888877766667666543
No 257
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.69 E-value=7 Score=43.29 Aligned_cols=203 Identities=19% Similarity=0.216 Sum_probs=115.0
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCC------------------
Q 008465 269 GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE------------------ 330 (564)
Q Consensus 269 ~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~------------------ 330 (564)
-+...|...+..|+.-+..++.-+.. .|..+..+|.+.++.+...|...|.+|+.++
T Consensus 218 ~~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kes 292 (948)
T KOG1058|consen 218 FNDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKES 292 (948)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhcc
Confidence 34566767777777776655543332 4566777777766666666666655555432
Q ss_pred cc-chhhhc--------------cCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhcc---
Q 008465 331 DN-KGSIVS--------------SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE--- 392 (564)
Q Consensus 331 ~~-~~~i~~--------------~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--- 392 (564)
+| ...|+- .|.+-.++.+|.+++.+++..+..+...|+... -+.-++.+|+.
T Consensus 293 dnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr----------Nvediv~~Lkke~~ 362 (948)
T KOG1058|consen 293 DNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR----------NVEDIVQFLKKEVM 362 (948)
T ss_pred CcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc----------cHHHHHHHHHHHHH
Confidence 22 222210 122333445555666666666666666665432 33334444431
Q ss_pred --------CCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhc-CChhhHHHHHhcC
Q 008465 393 --------GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILS-SHPEGKAAIGAAE 463 (564)
Q Consensus 393 --------~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~~~~~~i~~~g 463 (564)
.+.+.+..-+.++...+..-+. +.+.+|+.|++.+.+.++......+..+...- ..|.-|..
T Consensus 363 kT~~~e~d~~~~yRqlLiktih~cav~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~----- 433 (948)
T KOG1058|consen 363 KTHNEESDDNGKYRQLLIKTIHACAVKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRAS----- 433 (948)
T ss_pred hccccccccchHHHHHHHHHHHHHhhcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHH-----
Confidence 1234466667777766654332 23467899999998877765555555544322 23333333
Q ss_pred ChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCH
Q 008465 464 AVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQ 495 (564)
Q Consensus 464 ~i~~Lv~lL~~-~~~~~k~~A~~~L~~L~~~~~ 495 (564)
.+..|++-+.. .+.+.-+.|+|++..-|....
T Consensus 434 ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 434 IIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 34455555532 456778889999998887665
No 258
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.47 E-value=5.4 Score=42.30 Aligned_cols=195 Identities=13% Similarity=0.056 Sum_probs=119.8
Q ss_pred ChHHHHHHHhcC-CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhh-ccCC----HHHHHHHHHHHHHhhcccCh
Q 008465 341 AVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL-SEGT----QRGKKDAATALFNLCIYQGN 414 (564)
Q Consensus 341 ~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~----~~~~~~a~~aL~nL~~~~~~ 414 (564)
.+..++.+..+. ++..+..++.++..|..--.... .-...+..+...+ ...+ .......+|....|....+.
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence 566666666554 56677777777777752211111 0012233333333 1222 23334445555555544332
Q ss_pred hHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC-hhh-------------HHHHHhcCChHHHHHHHhcCChHHH
Q 008465 415 KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEG-------------KAAIGAAEAVPVLVEVIGNGSPRNR 480 (564)
Q Consensus 415 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~-------------~~~i~~~g~i~~Lv~lL~~~~~~~k 480 (564)
.. ...+..|+.+|.+ +.+...|...+..|... ++. ++.+.. ..+|.|++-.+..+...|
T Consensus 268 ~~----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 268 LA----TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIK 340 (415)
T ss_pred hH----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhH
Confidence 22 2345668888875 56677777778777655 321 333333 367888888887777788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 008465 481 ENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQV 544 (564)
Q Consensus 481 ~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~ 544 (564)
.....+|..+..+-|.....---..++|.|++-+..++..++..+..+|..+....+..-..+.
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl 404 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL 404 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 8889999999888875553333345889999999889999999999999888876654444433
No 259
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.42 E-value=0.048 Score=60.62 Aligned_cols=46 Identities=20% Similarity=0.497 Sum_probs=38.6
Q ss_pred ccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCC-CCCCCCCCCCcC
Q 008465 165 FRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGH-RTCPKTQQTLTS 211 (564)
Q Consensus 165 f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~-~~CP~~~~~l~~ 211 (564)
+.|++|.+ ..+|+++.|||.||+.|+...+...+ ..||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 88888999999999999999887433 469999776653
No 260
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.34 E-value=5.5 Score=44.71 Aligned_cols=188 Identities=13% Similarity=0.118 Sum_probs=116.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccch
Q 008465 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
+.+.....+..+.++-..++-.++..|+.+.+. ......+...+++...+..|++.|+-+--+|+..+..|+.-
T Consensus 725 ~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev----- 798 (982)
T KOG4653|consen 725 DIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV----- 798 (982)
T ss_pred cHHHHHHHHHHhcCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-----
Confidence 345567777777778888999999999999964 36677788889999999999999999988888877777632
Q ss_pred hhhccCChHHHHHHHhcC----CHHHHHHHHHHHHhccCC-cchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 008465 335 SIVSSGAVPSIVHVLRIG----SMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLC 409 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~----~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 409 (564)
.....+|.+.+.-.+. .++.+-..-.++.++... .+-..... .-.+...+..+++++...+..++.++++||
T Consensus 799 --y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 799 --YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLC 875 (982)
T ss_pred --cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHH
Confidence 3344566666633221 122222222333333211 11000000 023455566666667778899999999998
Q ss_pred cccChhHHHHHcCChHHHHHhccC-CCcchHHHHHHHHHHhcC
Q 008465 410 IYQGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILSS 451 (564)
Q Consensus 410 ~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~~L~~ 451 (564)
.-...+..=.=..++..++.+... ++.-++..|+.++..+-.
T Consensus 876 q~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 876 QLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 643322211112344445555533 556677788887776643
No 261
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.33 E-value=1.4 Score=43.65 Aligned_cols=183 Identities=17% Similarity=0.176 Sum_probs=110.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccC--ChHHHHHHHhcC----CHHHHHHHHHHHHhccCCcchhh
Q 008465 302 PLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSG--AVPSIVHVLRIG----SMEARENAAATLFSLSVIDENKV 375 (564)
Q Consensus 302 ~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g--~i~~Lv~lL~~~----~~e~~~~a~~~L~~Ls~~~~~~~ 375 (564)
..+...+..-..+.+.-++-.+.-++.++..-..+...+ ....+..++... .+..+-.+++++.|+.....++.
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~ 145 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ 145 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence 444555544444445666666766666665544444322 345555555443 56778889999999998888888
Q ss_pred Hhhhc-C-ChHHHHHhhccC----CHHHHHHHHHHHHHhhcccChhH--HHHHcCChHHHHHhc-cC-CCcchHHHHHHH
Q 008465 376 TIGAS-G-AIPPLVTLLSEG----TQRGKKDAATALFNLCIYQGNKG--KAVRAGVVPTLMHLL-TE-PGGGMVDEALAI 445 (564)
Q Consensus 376 ~i~~~-g-~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~~~~~~~~--~i~~~g~i~~Lv~lL-~~-~~~~~~~~al~~ 445 (564)
.+... + .+-..+..+... +..++..+++.++|++..-.... .-.....+..+++.+ .. .+++....++-+
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvA 225 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVA 225 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 77665 3 455555444444 57788889999999976422111 111122455566633 22 688999999999
Q ss_pred HHHhcCChhhHHHHHhc-CChHHHHHHH-hcCChHHHHHHH
Q 008465 446 LAILSSHPEGKAAIGAA-EAVPVLVEVI-GNGSPRNRENAA 484 (564)
Q Consensus 446 L~~L~~~~~~~~~i~~~-g~i~~Lv~lL-~~~~~~~k~~A~ 484 (564)
|++|...+......... |+-..+...- ....+++++.+.
T Consensus 226 lGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 226 LGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 99999777666666553 3333333332 234566666543
No 262
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=5.5 Score=43.97 Aligned_cols=93 Identities=22% Similarity=0.309 Sum_probs=60.8
Q ss_pred HhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHh-ccCCCcchHHHHHHHHHHhc-CChhhHHHHHhcCCh
Q 008465 388 TLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHL-LTEPGGGMVDEALAILAILS-SHPEGKAAIGAAEAV 465 (564)
Q Consensus 388 ~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~al~~L~~L~-~~~~~~~~i~~~g~i 465 (564)
+++.+.++-.+...+.++. |+....+ +.++|..|+.. .++.+.+++..|+-+|+-++ ..+ ...
T Consensus 526 el~~dkdpilR~~Gm~t~a-lAy~GTg-----nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---------~~~ 590 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLA-LAYVGTG-----NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---------EQL 590 (929)
T ss_pred HHhcCCchhhhhhhHHHHH-HHHhccC-----chhhHHHhhcccccccchHHHHHHHHHheeeEecCh---------hhc
Confidence 3444445555555544443 2221111 23567778877 56788899999999888554 333 246
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHHHhcCCH
Q 008465 466 PVLVEVIG-NGSPRNRENAAAVLVHLCAGDQ 495 (564)
Q Consensus 466 ~~Lv~lL~-~~~~~~k~~A~~~L~~L~~~~~ 495 (564)
+..+.+|. +.++.+|-.|+.+|.--|.+.+
T Consensus 591 ~s~V~lLses~N~HVRyGaA~ALGIaCAGtG 621 (929)
T KOG2062|consen 591 PSTVSLLSESYNPHVRYGAAMALGIACAGTG 621 (929)
T ss_pred hHHHHHHhhhcChhhhhhHHHHHhhhhcCCC
Confidence 67777775 4679999999999998888764
No 263
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=91.17 E-value=1.5 Score=33.85 Aligned_cols=67 Identities=21% Similarity=0.212 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 008465 439 VDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQQYLAEAKELGV 506 (564)
Q Consensus 439 ~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~ 506 (564)
.+.|++++++++..+.+...+.+.++++.++++... +...+|-.|..+|.-++. +.+.++.+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcCC
Confidence 568999999999999999888888999999999875 457889999999877765 6577777666653
No 264
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.81 E-value=5.2 Score=47.63 Aligned_cols=263 Identities=18% Similarity=0.159 Sum_probs=132.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHH-hCCHHHHHHhhCCCCHHHHHHHHHHHHhcc--cCCccch
Q 008465 258 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAE-AGAIPLLVGLLSTPDSRTQEHAVTALLNLS--ICEDNKG 334 (564)
Q Consensus 258 ~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs--~~~~~~~ 334 (564)
....|...+.++++..+..++-=|-.+...-...+..... ..+...+.++|.+.|+-+|..|..-|+-.- .+...++
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHH
Confidence 3344555666788887766543332222222212222221 234478899999999999999887776552 2333344
Q ss_pred hhhccCChHHHHHHHhcCCHH-------H---------------HHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhcc
Q 008465 335 SIVSSGAVPSIVHVLRIGSME-------A---------------RENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE 392 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~~~e-------~---------------~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 392 (564)
.+ +..|+.-|..|... . .-....=|++|+. .+++.+.+-..++|.++
T Consensus 899 ~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLVYKFM~LAnh 967 (1702)
T KOG0915|consen 899 SL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLVYKFMQLANH 967 (1702)
T ss_pred HH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHHHHHHHHhhh
Confidence 44 45566555433211 0 0011111222221 11122223333333333
Q ss_pred C-CHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhh-HHHHHhcCChHHHHH
Q 008465 393 G-TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEG-KAAIGAAEAVPVLVE 470 (564)
Q Consensus 393 ~-~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~-~~~i~~~g~i~~Lv~ 470 (564)
. .=..++-|+.-+..|+.....+.+-.-...||.|...=.+++..++.....+=..|...+.. .....+ ..+..|+.
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~ 1046 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLV 1046 (1702)
T ss_pred hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHH
Confidence 2 12334455555555555443333323335677777776677777765544444455554322 222222 35666666
Q ss_pred HHhcCChHHHHHHHHHHHHHhcCCHH--HHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 471 VIGNGSPRNRENAAAVLVHLCAGDQQ--YLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 471 lL~~~~~~~k~~A~~~L~~L~~~~~~--~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
-|.+..-++||.++.+|..|-.+.+. ..+.+- .+-..+...+.+-.+-+|+.|-.+.+.+.+
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsK 1110 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSK 1110 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667789999999999999887542 122221 122233333333344555555555555544
No 265
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.73 E-value=23 Score=40.23 Aligned_cols=224 Identities=16% Similarity=0.129 Sum_probs=141.3
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCCccchhhh--ccCChHHH
Q 008465 269 GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIV--SSGAVPSI 345 (564)
Q Consensus 269 ~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~~~~~i~--~~g~i~~L 345 (564)
..|.....+...+...+.....+...+ .-+....+..+.. ..+-++..|+.+++..+. ...+. ..++++.|
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDGL 535 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHHH
Confidence 445555677777776665322222211 1122333444433 345566677776666652 22222 36778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhc--cCCHHHHHHHHHHHHHhhcccChhHHHHHcCC
Q 008465 346 VHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS--EGTQRGKKDAATALFNLCIYQGNKGKAVRAGV 423 (564)
Q Consensus 346 v~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~ 423 (564)
.++....+.++......+|...+..+.-.....++.+.|..+.+.. +.++.+...+-.++..|+....+..-+ ..-.
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~~ 614 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QERL 614 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHHH
Confidence 8888777888888888899888888776666667778888777764 456777777777777776643333333 3368
Q ss_pred hHHHHHhccCCC----cchHHHHHHHHHHhcCC-hhh-HHHHHhcCChHHHHHH-HhcCChHHHHHHHHHHHHHhcCCHH
Q 008465 424 VPTLMHLLTEPG----GGMVDEALAILAILSSH-PEG-KAAIGAAEAVPVLVEV-IGNGSPRNRENAAAVLVHLCAGDQQ 496 (564)
Q Consensus 424 i~~Lv~lL~~~~----~~~~~~al~~L~~L~~~-~~~-~~~i~~~g~i~~Lv~l-L~~~~~~~k~~A~~~L~~L~~~~~~ 496 (564)
+|.++..|..+. .....-|+.+|..+..+ +.. -..++. -+.|.+.+. |++++..+-.++-.+|..+...+.+
T Consensus 615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e 693 (1005)
T KOG2274|consen 615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVTLE 693 (1005)
T ss_pred HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH
Confidence 999999997755 56777788888866543 222 223332 356777665 5667777788888888888777665
Q ss_pred HHHH
Q 008465 497 YLAE 500 (564)
Q Consensus 497 ~~~~ 500 (564)
....
T Consensus 694 q~~t 697 (1005)
T KOG2274|consen 694 QLLT 697 (1005)
T ss_pred HHHh
Confidence 4433
No 266
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.65 E-value=0.54 Score=29.56 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=25.1
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 008465 465 VPVLVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 465 i~~Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
+|.+++++.+.++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999875
No 267
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.57 E-value=1.6 Score=50.31 Aligned_cols=140 Identities=22% Similarity=0.196 Sum_probs=105.3
Q ss_pred CHHHHHHhhCC----CCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHh-cCCHHHHHHHHHHHHhccCCcchh
Q 008465 300 AIPLLVGLLST----PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLR-IGSMEARENAAATLFSLSVIDENK 374 (564)
Q Consensus 300 ~i~~Lv~lL~~----~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~-~~~~e~~~~a~~~L~~Ls~~~~~~ 374 (564)
+.|.++...+. .+|++|..|.-+|+.+..-+. .+ -.-.++.++.++. ++++.+|.+++.+++.|+..-++-
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~f-ces~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---EF-CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---HH-HHHHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 56777777754 479999999999998854221 11 1234788999887 678999999999999998653321
Q ss_pred hHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcC
Q 008465 375 VTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS 451 (564)
Q Consensus 375 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~ 451 (564)
. .-.-+.|...|.+.++.+++.|+..|.+|...+-.+ -.|-++.+..+|.+++.++.+-|=..+..|+.
T Consensus 996 i----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 996 I----EPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK----VKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred c----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 1 124567888889999999999999999998764433 35889999999999999888888766666654
No 268
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.52 E-value=2 Score=46.60 Aligned_cols=127 Identities=23% Similarity=0.237 Sum_probs=74.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCC-cchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhccc-ChhHHHHHc
Q 008465 344 SIVHVLRIGSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ-GNKGKAVRA 421 (564)
Q Consensus 344 ~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~-~~~~~i~~~ 421 (564)
.|+..-+ ++.+.+..|+..+...... ++.. ..+|..+++|+.+++..++..|+..|..+|.+. +...+
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k---- 96 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK---- 96 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH----
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH----
Confidence 3443333 5788888888888776544 3322 246899999999999999999999999999874 34443
Q ss_pred CChHHHHHhccCCCcchHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHHHh---cCChHHHHHHHHHHHH
Q 008465 422 GVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIG---NGSPRNRENAAAVLVH 489 (564)
Q Consensus 422 g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~k~~A~~~L~~ 489 (564)
++..|+++|..+++.-...+=.+|..|-. ++. +.+..+...+. +++..+|+.+...|..
T Consensus 97 -vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 97 -VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp -HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 45578999987665444444444443322 221 23444444443 4566678877765543
No 269
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.45 E-value=0.27 Score=46.54 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=40.9
Q ss_pred CCCccCcccccCCCCCE----EcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 008465 162 PDDFRCPISLELMKDPV----IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVT 215 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv----~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~ 215 (564)
...|.|||.+-.|..-. ..+|||.|.-..+.+. ...+|+.|+......+++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCcccccCeE
Confidence 45799999999997654 3589999999887765 356899999999877643
No 270
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.22 E-value=1.1 Score=42.75 Aligned_cols=85 Identities=24% Similarity=0.239 Sum_probs=65.8
Q ss_pred chHHHHHHHHHHhcCChhhHHHHHhcCC-------hHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHH-HHHHHcCCH
Q 008465 437 GMVDEALAILAILSSHPEGKAAIGAAEA-------VPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQQYL-AEAKELGVM 507 (564)
Q Consensus 437 ~~~~~al~~L~~L~~~~~~~~~i~~~g~-------i~~Lv~lL~-~~~~~~k~~A~~~L~~L~~~~~~~~-~~~~~~g~i 507 (564)
.-+..|+.+|..|+-.+.+...++.++- +..|+++|. .+++-.||.|+.+|.+||..+...+ ....+.+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4588999999999998888877776553 344455554 3568889999999999999888666 555678899
Q ss_pred HHHHHhhhcCCHHH
Q 008465 508 GPLVDLAQNGTDRG 521 (564)
Q Consensus 508 ~~L~~Ll~~~~~~~ 521 (564)
..|+..+.+....+
T Consensus 219 ~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 219 SHLIAFIEDAEQNA 232 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998765443
No 271
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=90.08 E-value=12 Score=36.98 Aligned_cols=211 Identities=18% Similarity=0.149 Sum_probs=122.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC--CCHHHHHHHHHHHHhcccCCccchhhhc
Q 008465 261 ILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST--PDSRTQEHAVTALLNLSICEDNKGSIVS 338 (564)
Q Consensus 261 ~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~i~~~A~~~L~nLs~~~~~~~~i~~ 338 (564)
.|=..|.+.++..|.+|+..|......-+... ....-+..|+.++.+ .|......++.+|..|..... ..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-----~~ 74 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-----FS 74 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-----CC
Confidence 35567788899999999999998765544322 222234566665544 355555555666666653221 11
Q ss_pred cCChHHHHHH-HhcC-----CHHHHHHHHHHHHhccCCcchhhHhh--hcCChHHHHHhhccC-CHHHHHHHHHHHHHhh
Q 008465 339 SGAVPSIVHV-LRIG-----SMEARENAAATLFSLSVIDENKVTIG--ASGAIPPLVTLLSEG-TQRGKKDAATALFNLC 409 (564)
Q Consensus 339 ~g~i~~Lv~l-L~~~-----~~e~~~~a~~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~ 409 (564)
.+....+++. .+.- ....|..+..+|..|.... ...+. ..+.+..++..+..+ ||+....+...+..+.
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 1113333333 2222 2456777777777776442 23332 236788888888765 8888888888877776
Q ss_pred cccChhHHHHHcCChHHHHHhccC---------C-Cc-ch-HHHH-HHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCC
Q 008465 410 IYQGNKGKAVRAGVVPTLMHLLTE---------P-GG-GM-VDEA-LAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS 476 (564)
Q Consensus 410 ~~~~~~~~i~~~g~i~~Lv~lL~~---------~-~~-~~-~~~a-l~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 476 (564)
..-+. ....+.+.+.+.. + ++ .+ .+.- .+....++.++.- ..-++|.|++-|.+++
T Consensus 153 ~~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~ 221 (262)
T PF14500_consen 153 QEFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTS 221 (262)
T ss_pred Hhccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCC
Confidence 55442 2223333333322 1 11 11 2222 2222344554432 2247999999999999
Q ss_pred hHHHHHHHHHHHHHhc
Q 008465 477 PRNRENAAAVLVHLCA 492 (564)
Q Consensus 477 ~~~k~~A~~~L~~L~~ 492 (564)
+.+|..++.+|...+.
T Consensus 222 ~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 222 PSVKLDSLQTLKACIE 237 (262)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999988655
No 272
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.92 E-value=23 Score=40.68 Aligned_cols=233 Identities=17% Similarity=0.153 Sum_probs=125.0
Q ss_pred hHHHHHHHHHcc--------CCHHHHHHHHHHHHHHHhh---ChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHh
Q 008465 257 TKIEILLCKLTS--------GSPEDQRSAAGEIRLLAKR---NADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 325 (564)
Q Consensus 257 ~~i~~Lv~~L~s--------~~~~~~~~al~~L~~L~~~---~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~n 325 (564)
+.++++++-+.+ .++.....|++.+..++.- .... +...+.-+++.++..++++---+|..|++++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~-~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPY-KSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCch-HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 455666666651 2344556677777776621 1111 123344466777778888888899999999999
Q ss_pred cc-cCCccchhhhccCChHHHHHHHh-cCCHHHHHHHHHHHHhccCCcc-hhhHhhhc--CChHHHHHhhccCCHHHHHH
Q 008465 326 LS-ICEDNKGSIVSSGAVPSIVHVLR-IGSMEARENAAATLFSLSVIDE-NKVTIGAS--GAIPPLVTLLSEGTQRGKKD 400 (564)
Q Consensus 326 Ls-~~~~~~~~i~~~g~i~~Lv~lL~-~~~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~ 400 (564)
++ .+-.+...+ ..+++.....|. +....++..|+-+|..+-.+.. ....+... +.++.|+.+.+.-+.+....
T Consensus 489 ~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 489 FSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 98 333333322 335677777777 5567789899999988877654 33444443 66677777776554333333
Q ss_pred HHHHHHHhhcccChhH-HHH--HcCChHHHHHhccC---CCcc---hHHHHHHHHHHhcC---ChhhHHHHH---hcCCh
Q 008465 401 AATALFNLCIYQGNKG-KAV--RAGVVPTLMHLLTE---PGGG---MVDEALAILAILSS---HPEGKAAIG---AAEAV 465 (564)
Q Consensus 401 a~~aL~nL~~~~~~~~-~i~--~~g~i~~Lv~lL~~---~~~~---~~~~al~~L~~L~~---~~~~~~~i~---~~g~i 465 (564)
.+..+. +...+.-. ... -.......++++.. .+.. -...|.++|..+.. .-+....+. +..++
T Consensus 567 vme~iV--~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l 644 (1010)
T KOG1991|consen 567 VMEKIV--CKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVL 644 (1010)
T ss_pred HHHHHH--HHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333221 11111111 111 12344445555542 2222 23344555543321 112222221 12345
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 008465 466 PVLVEVIGNGSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 466 ~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~ 494 (564)
+.+-.+|++.-.+.-+.+..++..+....
T Consensus 645 ~vi~~iL~~~i~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 645 PVIGFILKNDITDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 55555666655666666766666665544
No 273
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=89.79 E-value=4.6 Score=46.05 Aligned_cols=185 Identities=15% Similarity=0.099 Sum_probs=116.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhC-CCCHHHHHHHHHHHHhcccCCccchhhh
Q 008465 259 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSICEDNKGSIV 337 (564)
Q Consensus 259 i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~i~~~A~~~L~nLs~~~~~~~~i~ 337 (564)
.+.+-..+.+.+|..+.+|+..+.....+.. ........|.+-.++.... +.+..+...|+.+|..++..-..-..=.
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 3445556678899999999999998875433 1111112234444444333 3466666777777777764322111112
Q ss_pred ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccC--hh
Q 008465 338 SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG--NK 415 (564)
Q Consensus 338 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~--~~ 415 (564)
..+..+.|+.-++....++++.+..++-..... ......++.++..++++++..+......+.......+ ..
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 356778888888777777777666665554431 1123567888899999999988876666655443322 22
Q ss_pred HHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhc
Q 008465 416 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILS 450 (564)
Q Consensus 416 ~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~ 450 (564)
..-.-.+.++.++....+.+.+++..|..+++.+-
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 22223467888888888888999999988887553
No 274
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.78 E-value=17 Score=35.10 Aligned_cols=136 Identities=24% Similarity=0.245 Sum_probs=84.6
Q ss_pred HHHHHH-hhCCCCHHHHHHHHHHHHhcccCC-ccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhh
Q 008465 301 IPLLVG-LLSTPDSRTQEHAVTALLNLSICE-DNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIG 378 (564)
Q Consensus 301 i~~Lv~-lL~~~~~~i~~~A~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~ 378 (564)
++.|+. +-+..+++.+...+.+|..++.+. .+... ++..+..+.+.+..+....+...+..+-..++-.-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 345555 445578999999999999998876 33333 35556666666666666666666666653322110
Q ss_pred hcCChHHHHHhh--------ccC--CHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhc-cCCCcchHHHHHHHHH
Q 008465 379 ASGAIPPLVTLL--------SEG--TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLL-TEPGGGMVDEALAILA 447 (564)
Q Consensus 379 ~~g~i~~Lv~lL--------~~~--~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~~L~ 447 (564)
+.+..++..+ .++ ..+.....+.++..+|...+++. ...++.+..+| .+.++.++..++..|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3333333330 111 22333444567777877766622 23577778888 6777788899999999
Q ss_pred Hhc
Q 008465 448 ILS 450 (564)
Q Consensus 448 ~L~ 450 (564)
.|+
T Consensus 148 ~Lc 150 (234)
T PF12530_consen 148 PLC 150 (234)
T ss_pred HHH
Confidence 999
No 275
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=89.68 E-value=4.9 Score=43.77 Aligned_cols=167 Identities=17% Similarity=0.110 Sum_probs=104.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHH---HhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhc
Q 008465 262 LLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIA---EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVS 338 (564)
Q Consensus 262 Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~---~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~ 338 (564)
++..+..-.++.+.-|+..||.+.++..-+-..+. ...++..++..+. .++..+..++++|.|+-.++.+++.++.
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 33444445678888999999998876555443333 2235666666666 5677888999999999888777777764
Q ss_pred c--CChHHHHHHHhcC-CHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccC-----CHHHHHHHHHHHHHhh
Q 008465 339 S--GAVPSIVHVLRIG-SMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEG-----TQRGKKDAATALFNLC 409 (564)
Q Consensus 339 ~--g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~nL~ 409 (564)
. -.+..+.+. ++. +..++...+....|++..- ... .+.+..+.|...+... +-+.....+.||.+|+
T Consensus 628 ~~~~i~~~~~~~-~s~~~knl~ia~atlaln~sv~l~~~~---~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 628 RLESILDPVIEA-SSLSNKNLQIALATLALNYSVLLIQDN---EQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred HHHHHhhhhhhh-hcccchhHHHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 3 222222222 222 3455555555555554321 101 1135556666555432 3345667788999999
Q ss_pred cccChhHHHHHcCChHHHHHhccC
Q 008465 410 IYQGNKGKAVRAGVVPTLMHLLTE 433 (564)
Q Consensus 410 ~~~~~~~~i~~~g~i~~Lv~lL~~ 433 (564)
..+.+..++.+.--+..++.-+++
T Consensus 704 t~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 704 TVDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred cccHHHHHHHHhcCHHHHHHHHHH
Confidence 999888888877777777777755
No 276
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=89.65 E-value=6.2 Score=45.06 Aligned_cols=185 Identities=12% Similarity=0.115 Sum_probs=118.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhcccChhHHHHHcCC
Q 008465 345 IVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL-SEGTQRGKKDAATALFNLCIYQGNKGKAVRAGV 423 (564)
Q Consensus 345 Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~ 423 (564)
+..-+.+..+.-|..|+.-+................|.+-.++... ++.+..+...++..|..|+..-..-..-...+.
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v 337 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNV 337 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhh
Confidence 3344445667777777776666554333011111123333344333 234667778888888877765333333345578
Q ss_pred hHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHH
Q 008465 424 VPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAK 502 (564)
Q Consensus 424 i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~ 502 (564)
++.++.-+.+....+++.++.++-..+.. ..-....+.+.+.+++++|..+..+...+.......+ .....-.
T Consensus 338 ~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t 411 (815)
T KOG1820|consen 338 FPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKET 411 (815)
T ss_pred cchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhh
Confidence 89999999888888888888887765541 1112357788888999999999998777766555443 2232223
Q ss_pred HcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 008465 503 ELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 503 ~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 535 (564)
-.++++.++....+.+..+|..|..++..+-+.
T Consensus 412 ~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 412 VKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred HHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999977655543
No 277
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.61 E-value=7.3 Score=44.66 Aligned_cols=251 Identities=20% Similarity=0.216 Sum_probs=149.3
Q ss_pred HHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCH---
Q 008465 278 AGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSM--- 354 (564)
Q Consensus 278 l~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~--- 354 (564)
..+|..+.+.+.+|...+.++.++..++.++-+ .+-|...+.++.-|...+..+ ++..-+-.++..|++|-.
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence 456777888899999999999998888888743 333444444444443322110 122335567888877521
Q ss_pred ---------HHHHHHHHHHHhccCC-cchhhHhhhcCChHHHHHhhcc----------CCHHHHHHHHHHHHHh-----h
Q 008465 355 ---------EARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSE----------GTQRGKKDAATALFNL-----C 409 (564)
Q Consensus 355 ---------e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~~~a~~aL~nL-----~ 409 (564)
.+......+++.+... ...+..+++.+++..|...|.. +|.-+...-...|+.+ +
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 2344455666666543 3567778888888888887742 1222222233333332 3
Q ss_pred cccChhHHH-------------HHcC---------ChHHHHHh----ccCCCcchHHHHHHHHHHhcC------Ch----
Q 008465 410 IYQGNKGKA-------------VRAG---------VVPTLMHL----LTEPGGGMVDEALAILAILSS------HP---- 453 (564)
Q Consensus 410 ~~~~~~~~i-------------~~~g---------~i~~Lv~l----L~~~~~~~~~~al~~L~~L~~------~~---- 453 (564)
.++.|+..+ .+.| .|..|.++ +..+...--..|+.-+..+-. .|
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 344454422 1233 12222221 111111111223333332211 11
Q ss_pred -hhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhh---cCCHHHHHHHHHHH
Q 008465 454 -EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQ---NGTDRGKRKAAQLL 529 (564)
Q Consensus 454 -~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~---~~~~~~k~~A~~lL 529 (564)
..++.|.+.|++..|+..+-...|+.+..-...+-.+++.+|.+....-..|.++.|++++. +|+...--.|..++
T Consensus 898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIv 977 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIV 977 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence 23577888999999999998889999999999999999999888888888899999988863 55555555555555
Q ss_pred HHHH
Q 008465 530 ERMS 533 (564)
Q Consensus 530 ~~l~ 533 (564)
..|.
T Consensus 978 emLg 981 (2799)
T KOG1788|consen 978 EMLG 981 (2799)
T ss_pred HHHh
Confidence 5554
No 278
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=89.46 E-value=6.1 Score=43.59 Aligned_cols=132 Identities=17% Similarity=0.082 Sum_probs=94.0
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhc-cCCCcchHHHHHHHHHHhcCChhhHHH
Q 008465 380 SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLL-TEPGGGMVDEALAILAILSSHPEGKAA 458 (564)
Q Consensus 380 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~~~~~~ 458 (564)
..++|.|..-+++.+..++..++..+..++..-+ ...++.-++|.|-++. ...+..++..++.+++.+...
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~------ 459 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR------ 459 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH------
Confidence 3567888888888899999999999998877655 4567778888888875 346778899999999988822
Q ss_pred HHhcCChHHH---HHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHH
Q 008465 459 IGAAEAVPVL---VEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDR 520 (564)
Q Consensus 459 i~~~g~i~~L---v~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~ 520 (564)
+-...+++.+ .+-.+..+|.+....+.+..++....+.. +.++...++|.++-+...+.-.
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~ 523 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLN 523 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccccc
Confidence 2222344444 44445567888887777777766544332 5566667999999998877533
No 279
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=89.36 E-value=9 Score=43.33 Aligned_cols=193 Identities=13% Similarity=0.063 Sum_probs=120.4
Q ss_pred HHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCCccchhhhccCChH--HHHHHHhcCC-HH
Q 008465 280 EIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVP--SIVHVLRIGS-ME 355 (564)
Q Consensus 280 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~--~Lv~lL~~~~-~e 355 (564)
.|......++++...+.+.|++..+..+++. ...+++..++..+.|++...+.+........+. .+-..+...+ .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7888899999999999999999999999986 567899999999999998776666555333333 3333444444 37
Q ss_pred HHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHH-HHHhccC-
Q 008465 356 ARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPT-LMHLLTE- 433 (564)
Q Consensus 356 ~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~-Lv~lL~~- 433 (564)
.-+.|+.+|..+..+.+. ....+.=+ .+......++. ........+.....+.+ +..++..
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r~-----------~~~~~l~e~i~---~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFRN-----------SVNELLVEAIS---RWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---CccccchH-----------HHHHHHHHHhh---ccCccceeehhhhhcchhHHHHhccc
Confidence 778888888887765443 11111111 11111122222 22222222332233333 4445533
Q ss_pred CCcchHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHHhc-CChHHHHHHHHHHHH
Q 008465 434 PGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGN-GSPRNRENAAAVLVH 489 (564)
Q Consensus 434 ~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~k~~A~~~L~~ 489 (564)
..+..+.-|++++.++... +++...+.+.|+++.+.+.-.. ....+++.+..++-+
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 5677788999999988754 5666667777888887665432 245566666655543
No 280
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=88.98 E-value=12 Score=37.30 Aligned_cols=199 Identities=14% Similarity=0.110 Sum_probs=136.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHh-----CCHHHHHHhhCCCCHHHHHHHHHHHHhcccC
Q 008465 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEA-----GAIPLLVGLLSTPDSRTQEHAVTALLNLSIC 329 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~-----g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~ 329 (564)
..+....|+..+...+.+.+..++....++-.....+|...++. ..+..|+.--.. .+++-.+.-..|.....+
T Consensus 77 ~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirh 155 (342)
T KOG1566|consen 77 NADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRH 155 (342)
T ss_pred hCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhh
Confidence 34677889999999999999999988888876655555544433 233333333111 244444444444444445
Q ss_pred CccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc-hhhHhhhc---CC-hHHHHHhhccCCHHHHHHHHHH
Q 008465 330 EDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE-NKVTIGAS---GA-IPPLVTLLSEGTQRGKKDAATA 404 (564)
Q Consensus 330 ~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~---g~-i~~Lv~lL~~~~~~~~~~a~~a 404 (564)
+.--+.|....-+.........++-++...|..+...+-..+. ....+... .. .+.--.++.+++--++..+..+
T Consensus 156 e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kl 235 (342)
T KOG1566|consen 156 EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKL 235 (342)
T ss_pred HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHh
Confidence 5455566677778888888888877777777777777654432 11222222 22 3446778889999999999999
Q ss_pred HHHhhcccChhHHHH----HcCChHHHHHhccCCCcchHHHHHHHHHHhcCChh
Q 008465 405 LFNLCIYQGNKGKAV----RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE 454 (564)
Q Consensus 405 L~nL~~~~~~~~~i~----~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~ 454 (564)
|+.+-.+..|...+. +......++.+|++++..++-.|..+......++.
T Consensus 236 lg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 236 LGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 999999988876554 34678889999999999999999999998887764
No 281
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.74 E-value=4.2 Score=40.17 Aligned_cols=146 Identities=19% Similarity=0.107 Sum_probs=93.6
Q ss_pred hHHHHHhhcc----CCHHHHHHHHHHHHHhhcccChhHHHHHc-C-ChHHHHHhccCC----CcchHHHHHHHHHHhcCC
Q 008465 383 IPPLVTLLSE----GTQRGKKDAATALFNLCIYQGNKGKAVRA-G-VVPTLMHLLTEP----GGGMVDEALAILAILSSH 452 (564)
Q Consensus 383 i~~Lv~lL~~----~~~~~~~~a~~aL~nL~~~~~~~~~i~~~-g-~i~~Lv~lL~~~----~~~~~~~al~~L~~L~~~ 452 (564)
...+..++.. ..+..+..++++++|+..+..++..+... + .+-..+..+... +..++..+..++.|++..
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~ 187 (268)
T PF08324_consen 108 ADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVL 187 (268)
T ss_dssp HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 3444444433 36778899999999999999999877743 2 344444433332 577888888888899742
Q ss_pred hhhHH--HHHhcCChHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhh-cCCHHHHHHHHH
Q 008465 453 PEGKA--AIGAAEAVPVLVEVIGN--GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQ-NGTDRGKRKAAQ 527 (564)
Q Consensus 453 ~~~~~--~i~~~g~i~~Lv~lL~~--~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~-~~~~~~k~~A~~ 527 (564)
-.... .-.....+..+++.+.. .+++..-.++.+|++|+..++.........|+...+..... ...+++++.+..
T Consensus 188 ~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e 267 (268)
T PF08324_consen 188 LHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAE 267 (268)
T ss_dssp HHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence 21100 00011135556664432 57888899999999999877666666655666666666654 447888877765
Q ss_pred H
Q 008465 528 L 528 (564)
Q Consensus 528 l 528 (564)
+
T Consensus 268 i 268 (268)
T PF08324_consen 268 I 268 (268)
T ss_dssp H
T ss_pred C
Confidence 3
No 282
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=88.65 E-value=7.6 Score=42.74 Aligned_cols=260 Identities=13% Similarity=0.123 Sum_probs=156.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCCh
Q 008465 263 LCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAV 342 (564)
Q Consensus 263 v~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i 342 (564)
+..+...+.+.+.+-...|.... +..-+.++..-++|.|+..+.-++ .-...+.-|..+...-.... ...+.+
T Consensus 260 Leel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~ 332 (690)
T KOG1243|consen 260 LEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRII 332 (690)
T ss_pred HHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchh
Confidence 34444556666666666555522 233345566667788888777655 22233444444433222112 567789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcC
Q 008465 343 PSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAG 422 (564)
Q Consensus 343 ~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g 422 (564)
+.|++++++.+..+|-.-+.-+-... +..-..+.+..++|.+..-+.+.++.+++..+..+..|+..-..+ .+...
T Consensus 333 p~l~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~E 408 (690)
T KOG1243|consen 333 PVLLKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGE 408 (690)
T ss_pred hhHHHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHH
Confidence 99999999998777754443333322 233455667789999999999999999999999888776543322 22223
Q ss_pred ChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCC-hHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHH
Q 008465 423 VVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEA-VPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEA 501 (564)
Q Consensus 423 ~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~ 501 (564)
.+..+..+=.+.+..++....-+|+.++.+.... ++.++ +.....-+++.-...|..++..++..+..-+. .-
T Consensus 409 llr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~---~~ 482 (690)
T KOG1243|consen 409 LLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ---SE 482 (690)
T ss_pred HHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch---hh
Confidence 3334444333455566666666666555443211 13333 33444456666667788888887766553321 11
Q ss_pred HHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHH
Q 008465 502 KELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQ 539 (564)
Q Consensus 502 ~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~ 539 (564)
+...+++.+.-+..+.+.-++..|-..++.+....+..
T Consensus 483 va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 483 VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 22347778888888888888888888887776655544
No 283
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.60 E-value=7.1 Score=45.40 Aligned_cols=148 Identities=21% Similarity=0.193 Sum_probs=106.2
Q ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhC-CCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHH
Q 008465 268 SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIV 346 (564)
Q Consensus 268 s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv 346 (564)
.++|+.|..|.-+|..+..-+.+... ...|.|+..+. ++++.+|-+++.+++.|+..-+|-- .-.-+.+.
T Consensus 934 ~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpnli----e~~T~~Ly 1004 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLI----EPWTEHLY 1004 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccccc----chhhHHHH
Confidence 36799999999999988754433322 34689999887 7899999999999999986443311 12245577
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHH
Q 008465 347 HVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPT 426 (564)
Q Consensus 347 ~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~ 426 (564)
.-|...++.+|+.|.-+|.+|-.++- |--.|.+.-+...|.+++++++..|=.....|+...+... ..+|-
T Consensus 1005 ~rL~D~~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n~iy-----nlLPd 1075 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKGNTIY-----NLLPD 1075 (1251)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccchh-----hhchH
Confidence 77888899999999999999975543 3345899999999999999988877766666665442221 34444
Q ss_pred HHHhccC
Q 008465 427 LMHLLTE 433 (564)
Q Consensus 427 Lv~lL~~ 433 (564)
++.-|++
T Consensus 1076 il~~Ls~ 1082 (1251)
T KOG0414|consen 1076 ILSRLSN 1082 (1251)
T ss_pred HHHhhcc
Confidence 5555544
No 284
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=88.55 E-value=1.6 Score=49.00 Aligned_cols=147 Identities=15% Similarity=0.113 Sum_probs=99.5
Q ss_pred cCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhc--CChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhH
Q 008465 339 SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS--GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG 416 (564)
Q Consensus 339 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 416 (564)
...+|.+++...+.+...+-+-..+|.++-.+-+- ..+... ..+|.|++-|.-.|..++..++.+|.-+....+.-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 46788888887755555566666666666543222 233322 667778888888899999889888887665544332
Q ss_pred HHHHcCChHHHHHhccCCC---cchHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 008465 417 KAVRAGVVPTLMHLLTEPG---GGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAV 486 (564)
Q Consensus 417 ~i~~~g~i~~Lv~lL~~~~---~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~ 486 (564)
.---..+||.++.+=.+.+ ..++..|+.+|..|.. .|...-.-.+..++..|...|.+....+|+.|+.+
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 2222356777777765544 4578999999999998 55544444445678888888887777788888765
No 285
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=88.48 E-value=17 Score=35.86 Aligned_cols=220 Identities=13% Similarity=0.077 Sum_probs=126.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcC--CHHHHHHHHHHHHhccCCcchhhHhhhc
Q 008465 303 LLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDENKVTIGAS 380 (564)
Q Consensus 303 ~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~~ 380 (564)
.|=..|.++++.+|..|+..|..+...-+. ......-+..|+.++.+. +......++..+..|.......... ..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~--~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~ 79 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPP--DFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-AV 79 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCH--hhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-HH
Confidence 344678889999999999988876432211 112223356666666443 4555555566666665333211111 11
Q ss_pred CChHHHHHhhc--cCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccC-CCcchHHHHHHHHHHhcCChhhHH
Q 008465 381 GAIPPLVTLLS--EGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILSSHPEGKA 457 (564)
Q Consensus 381 g~i~~Lv~lL~--~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~~~~~ 457 (564)
..+..+.+-.. +-....|..+...|..|.........-...+.+..+++.+.. .+|.-...+..++..+...-+
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--- 156 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--- 156 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc---
Confidence 12222222221 114566777888888876653322222234677788888855 778777777777776654322
Q ss_pred HHHhcCChHHHHHHHhc----------CCh--HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHH
Q 008465 458 AIGAAEAVPVLVEVIGN----------GSP--RNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKA 525 (564)
Q Consensus 458 ~i~~~g~i~~Lv~lL~~----------~~~--~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A 525 (564)
. ...+..+.+.+.. ++| -.++.-...|.+.-..++..... ++|.|++=+.++.+.+|..+
T Consensus 157 --~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~-----~~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 157 --I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPF-----AFPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred --c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHH-----HHHHHHHHHcCCCcHHHHHH
Confidence 1 2344555555522 122 23444444555543445554433 68889999999999999999
Q ss_pred HHHHHHHHhhH
Q 008465 526 AQLLERMSRFI 536 (564)
Q Consensus 526 ~~lL~~l~~~~ 536 (564)
..+|..+....
T Consensus 229 L~tL~~c~~~y 239 (262)
T PF14500_consen 229 LQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHC
Confidence 99988877654
No 286
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=88.45 E-value=1.8 Score=39.05 Aligned_cols=144 Identities=17% Similarity=0.104 Sum_probs=84.8
Q ss_pred HHHHHHHcc--CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccC-Ccc-chh
Q 008465 260 EILLCKLTS--GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDN-KGS 335 (564)
Q Consensus 260 ~~Lv~~L~s--~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~-~~~-~~~ 335 (564)
..++..|.. ..++.+..++-.+..+- +..+..+. .-+-+.+-.++..++.+-...++.++..+--. ++- ...
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 345555543 44566777766666653 22222221 11223444455554444556677777766432 232 344
Q ss_pred hhccCChHHHHHHHh--cCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccC-CHH-HHHHHHHHHHHh
Q 008465 336 IVSSGAVPSIVHVLR--IGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG-TQR-GKKDAATALFNL 408 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~--~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~-~~~~a~~aL~nL 408 (564)
+...|.++.++.+.. +.+...+..++.+|..=+.+...|.. ....+++.|-++++.+ ++. ++..|+..|..|
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 457899999999998 55666776666666655554445544 4556789999999644 555 788888887653
No 287
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=87.97 E-value=18 Score=40.92 Aligned_cols=168 Identities=14% Similarity=0.078 Sum_probs=111.2
Q ss_pred HHHhccCC-cchhhHhhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcccChhHHHHHcCCh--HHHHHhccC-CCcc
Q 008465 363 TLFSLSVI-DENKVTIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQGNKGKAVRAGVV--PTLMHLLTE-PGGG 437 (564)
Q Consensus 363 ~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i--~~Lv~lL~~-~~~~ 437 (564)
+|+++... +++...+.+.|++..+.+.++.- .......++..+.|++...+.+........+ ..+-.++.. .+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 45566555 46788888999999999999854 5778899999999999887665432211111 233334444 3336
Q ss_pred hHHHHHHHHHHhcCChh------hH----HHHHh--------------cCChHH-HHHHHhc-CChHHHHHHHHHHHHHh
Q 008465 438 MVDEALAILAILSSHPE------GK----AAIGA--------------AEAVPV-LVEVIGN-GSPRNRENAAAVLVHLC 491 (564)
Q Consensus 438 ~~~~al~~L~~L~~~~~------~~----~~i~~--------------~g~i~~-Lv~lL~~-~~~~~k~~A~~~L~~L~ 491 (564)
.-..|+.+|+.+..+.+ .+ +.+.+ ...+.. +..++.. ..+..+..|++++.+++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 77788888887765422 11 11111 112233 4445543 45778999999999999
Q ss_pred cCCHHHHHHHHHcCCHHHHHHhhhcC-CHHHHHHHHHHHH
Q 008465 492 AGDQQYLAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLE 530 (564)
Q Consensus 492 ~~~~~~~~~~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~ 530 (564)
..+++++..+.+.|+++.+..+.... ...++..+..++.
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 99999999999999999998886544 4445555555543
No 288
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.84 E-value=1.3 Score=41.62 Aligned_cols=97 Identities=23% Similarity=0.250 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCC-----hHHHHHHHHHHHHHhcCCHHHH-HHHHHcCCHHHH
Q 008465 437 GMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS-----PRNRENAAAVLVHLCAGDQQYL-AEAKELGVMGPL 510 (564)
Q Consensus 437 ~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~k~~A~~~L~~L~~~~~~~~-~~~~~~g~i~~L 510 (564)
.-.-.|+.+|..++++|+.+..++++..--.|..+|...+ ..+|..+.+++..|..++...+ ..+....++|.+
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 4456788899999999999999998875555666664322 4568889999999998776554 666677899999
Q ss_pred HHhhhcCCHHHHHHHHHHHHHHH
Q 008465 511 VDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 511 ~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
+.++..|+.-.|.-|..++..+-
T Consensus 195 LrIme~gSElSktvaifI~qkil 217 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKIL 217 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHh
Confidence 99999998888888888776654
No 289
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.67 E-value=6.2 Score=43.59 Aligned_cols=126 Identities=22% Similarity=0.133 Sum_probs=73.5
Q ss_pred CHHHHHHh-hCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcC-CHHHHHHHHHHHHhccCCcchhhHh
Q 008465 300 AIPLLVGL-LSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTI 377 (564)
Q Consensus 300 ~i~~Lv~l-L~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i 377 (564)
+|..|+.. .++.+.++++.|+.+|+-++..+. ...+.++++|... ++-+|.-++-+|.--+....++..
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA- 625 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA- 625 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH-
Confidence 45555555 445677777777777777655432 3456677777654 788888888888777665554443
Q ss_pred hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchH
Q 008465 378 GASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMV 439 (564)
Q Consensus 378 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 439 (564)
|..|-.+..+...-++..|+-++.-+........----.|+.+.+.+++.+.+.+..
T Consensus 626 -----i~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 626 -----INLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred -----HHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHH
Confidence 344444555555667777777777554332211111112445556666665544433
No 290
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.49 E-value=0.31 Score=52.04 Aligned_cols=39 Identities=28% Similarity=0.571 Sum_probs=31.7
Q ss_pred CCCccCcccccCC----CCCEEcCCCCcccHHHHHHHHHhCCCCCC
Q 008465 162 PDDFRCPISLELM----KDPVIVSTGQTYERSCIEKWLEAGHRTCP 203 (564)
Q Consensus 162 p~~f~Cpic~~lm----~dPv~~~cg~t~~r~ci~~~~~~~~~~CP 203 (564)
.+-++|+||...+ ..||.+-||||.|+.|.+... +.+||
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly---n~scp 51 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY---NASCP 51 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh---hccCC
Confidence 3457899997665 479999999999999999865 45677
No 291
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.48 E-value=0.52 Score=47.48 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=47.3
Q ss_pred ccCcccccCCC------CCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc-----CCCCCchHHHHHHHHHH
Q 008465 165 FRCPISLELMK------DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT-----STAVTPNYVLRSLIAQW 227 (564)
Q Consensus 165 f~Cpic~~lm~------dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~-----~~~l~~n~~l~~~i~~~ 227 (564)
+.|-||.+-+. -|-++.|||++|..|+.+.+..+.-.||.||.+.. ...+..|+.+...++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 45777766553 47778899999999999888777778999999842 22466777777777665
No 292
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.34 E-value=0.15 Score=49.33 Aligned_cols=41 Identities=22% Similarity=0.455 Sum_probs=32.0
Q ss_pred CccCcccccCCCCCEEcCCCCc-ccHHHHHHHHHhCCCCCCCCCCCC
Q 008465 164 DFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTL 209 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l 209 (564)
+..|.||++..+|.|.++|||. -|-.|=.+ -..||.||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHH
Confidence 7899999999999999999994 45555221 23699998754
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.17 E-value=0.46 Score=52.71 Aligned_cols=43 Identities=23% Similarity=0.524 Sum_probs=36.6
Q ss_pred CCCCccCcccccCCCCCEE-cCCCCcccHHHHHHHHHhCCCCCCCCCC
Q 008465 161 IPDDFRCPISLELMKDPVI-VSTGQTYERSCIEKWLEAGHRTCPKTQQ 207 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~dPv~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~ 207 (564)
+-+.-.|..|.-.+.-|++ ..|||.|.+.|.. .+...||+|..
T Consensus 837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 3445689999999999987 5999999999987 47789999976
No 294
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.02 E-value=0.65 Score=39.70 Aligned_cols=51 Identities=16% Similarity=0.329 Sum_probs=41.8
Q ss_pred CCccCcccccCCCCCEEc----CCCCcccHHHHHHHHHh--CCCCCCCCCCCCcCCC
Q 008465 163 DDFRCPISLELMKDPVIV----STGQTYERSCIEKWLEA--GHRTCPKTQQTLTSTA 213 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~~----~cg~t~~r~ci~~~~~~--~~~~CP~~~~~l~~~~ 213 (564)
.-+.|-||.+.-.|+..+ .||...|..|.-..|+. -++.||+|...+....
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 468999999999888775 48999999999988873 3578999998876443
No 295
>PRK14707 hypothetical protein; Provisional
Probab=86.98 E-value=46 Score=41.69 Aligned_cols=274 Identities=16% Similarity=0.074 Sum_probs=144.3
Q ss_pred hHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHh-cccCCccch
Q 008465 257 TKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN-LSICEDNKG 334 (564)
Q Consensus 257 ~~i~~Lv~~L~s-~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~n-Ls~~~~~~~ 334 (564)
..|..++.-++. ++......|+..|.........-+..+-..|+...|-.+-+-++...-.+|+..|.. ++.+..-+.
T Consensus 205 q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~ 284 (2710)
T PRK14707 205 QGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRK 284 (2710)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHH
Confidence 345555555543 333334445555554443344444444444444444444455665555555555443 443333333
Q ss_pred hhhccCChHHHHHHHhc-CC-HHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHH-Hhhcc
Q 008465 335 SIVSSGAVPSIVHVLRI-GS-MEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-NLCIY 411 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~-~~-~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~-nL~~~ 411 (564)
.+ +.-.+.-.++-|+. .+ ...+..|..+-..|..+.+-+..+-..++-..|-.+-+=.+..+-..|+.+|. .|+.+
T Consensus 285 al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d 363 (2710)
T PRK14707 285 AL-DPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVAD 363 (2710)
T ss_pred hc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccC
Confidence 33 22233333444433 23 34455555555667665555544433344333333334345555555555555 46655
Q ss_pred cChhHHHHHcCChHHHHHhccC-CCcchHHHHHHHHH-HhcCChhhHHHHHhcCChHHHHHHHh-cCChHHHHHHHHHHH
Q 008465 412 QGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILA-ILSSHPEGKAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLV 488 (564)
Q Consensus 412 ~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~-~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~k~~A~~~L~ 488 (564)
++-+..+ +..++..+++-|+. ++......|...|+ .|..+++-+..+--.| |..++.-|. =++..+...|+..|.
T Consensus 364 ~~l~~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-van~lnalsKWPd~~~C~~aa~~lA 441 (2710)
T PRK14707 364 PELRKDL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQG-VSNALNALAKWPDLPICGQAVSALA 441 (2710)
T ss_pred Hhhhccc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhh-HHHHHHHhhcCCcchhHHHHHHHHH
Confidence 5554433 34566667777755 66666666666666 6777777777765444 555555554 356667777777776
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHH-HHHHHH
Q 008465 489 HLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQ-LLERMS 533 (564)
Q Consensus 489 ~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~-lL~~l~ 533 (564)
--..++.+.++.+--.++...|-.+.+=++.++...|.+ +...|.
T Consensus 442 ~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~ 487 (2710)
T PRK14707 442 GRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLA 487 (2710)
T ss_pred HHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence 655667666666655566666666666665555544433 444444
No 296
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.56 E-value=8.8 Score=42.29 Aligned_cols=105 Identities=17% Similarity=0.081 Sum_probs=74.1
Q ss_pred cCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHH
Q 008465 339 SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKA 418 (564)
Q Consensus 339 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i 418 (564)
+|.+..+++...+.+..+|...+.+|..|+........-.-.+....+...+.+..+.++..|+.+|..+-..+.+-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 45555566666677889999999999999864333333334467777888888888999999999999987443321
Q ss_pred HHcCChHHHHHhccC-CCcchHHHHHHHHH
Q 008465 419 VRAGVVPTLMHLLTE-PGGGMVDEALAILA 447 (564)
Q Consensus 419 ~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~ 447 (564)
+..++..++.++.+ ++++++..|+..+.
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 12455667777755 88889888765544
No 297
>PRK14707 hypothetical protein; Provisional
Probab=86.46 E-value=76 Score=39.96 Aligned_cols=269 Identities=20% Similarity=0.149 Sum_probs=144.5
Q ss_pred HHHHHHHHcc--CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHh-cccCCccchh
Q 008465 259 IEILLCKLTS--GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN-LSICEDNKGS 335 (564)
Q Consensus 259 i~~Lv~~L~s--~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~n-Ls~~~~~~~~ 335 (564)
+..|+.-++. ++..-+..+......++. .+..+..+-..|+...|-.+-+-++...-.+|+..|.. |+.++.-+..
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~ 243 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNE 243 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-ChhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHh
Confidence 3344444432 333344334333344443 44445455444444444444455544444455555554 4444333333
Q ss_pred hhccCChHHHHHHHhcC-C-HHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHH-Hhhccc
Q 008465 336 IVSSGAVPSIVHVLRIG-S-MEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-NLCIYQ 412 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~~-~-~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~-nL~~~~ 412 (564)
+ +.-.+...++-|..- + +.....+.++-..|+.+..-+..+...++-..|-.+-+-.+..+-..|+..|. .|...+
T Consensus 244 ~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~ 322 (2710)
T PRK14707 244 L-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDP 322 (2710)
T ss_pred C-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccH
Confidence 3 444555556655543 3 34444444444566655555555544444444444444456666666666665 455443
Q ss_pred ChhHHHHHcCChHHHHHhccC-CCcchHHHHHHHH-HHhcCChhhHHHHHhcCChHHHHHHHhc-CChHHHHHHHHHHHH
Q 008465 413 GNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAIL-AILSSHPEGKAAIGAAEAVPVLVEVIGN-GSPRNRENAAAVLVH 489 (564)
Q Consensus 413 ~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~~L-~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~k~~A~~~L~~ 489 (564)
+-+ .-.+.-.+..+++-|+. ++..+...|...| ..|+..++-+..+--. ++..++.-|.. ++......|+..|..
T Consensus 323 ~l~-~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~~aa~~LA~ 400 (2710)
T PRK14707 323 ELC-KALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCAAAASALAE 400 (2710)
T ss_pred hhh-hccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchh-HHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence 333 33344456666666755 5555555554444 4788888777666433 45555555543 445566666666666
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008465 490 LCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLER 531 (564)
Q Consensus 490 L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~ 531 (564)
=..++++....+--.|+-..|-.+.+=++..+...|...|..
T Consensus 401 ~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~ 442 (2710)
T PRK14707 401 HVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAG 442 (2710)
T ss_pred HhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHH
Confidence 555676777776666777777777777777777666665543
No 298
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=85.76 E-value=5.2 Score=35.42 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhccc
Q 008465 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSI 328 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~ 328 (564)
..+.+..|.+.|+++++.+|..|+..|..+.+. .......+...+++..|++++.. .++.++..++..+.+.+.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999886 35566778888999999999974 578899999988888764
No 299
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=85.52 E-value=0.71 Score=43.31 Aligned_cols=58 Identities=26% Similarity=0.395 Sum_probs=44.2
Q ss_pred CccCcccccCCCCCEE-cCCCCcccHHHHHHHHH-hCCCCCCC--CCCCCcCCCCCchHHHH
Q 008465 164 DFRCPISLELMKDPVI-VSTGQTYERSCIEKWLE-AGHRTCPK--TQQTLTSTAVTPNYVLR 221 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~-~~cg~t~~r~ci~~~~~-~~~~~CP~--~~~~l~~~~l~~n~~l~ 221 (564)
+.+|||+.....-|++ ..|+|.|++..|.+.++ ...+.||. |.+......+.-++.+.
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE 250 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILE 250 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHH
Confidence 4799999998888876 48999999999999987 23456885 76766666665555553
No 300
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.42 E-value=0.6 Score=45.70 Aligned_cols=47 Identities=23% Similarity=0.499 Sum_probs=37.6
Q ss_pred CCCCccCcccccCCC---CCEEcCCCCcccHHHHHHHHHhCC--CCCCCCCC
Q 008465 161 IPDDFRCPISLELMK---DPVIVSTGQTYERSCIEKWLEAGH--RTCPKTQQ 207 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~---dPv~~~cg~t~~r~ci~~~~~~~~--~~CP~~~~ 207 (564)
...-|.||+..+.-. -||.++|||..-...+.+.-+.|. +.||.|..
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 445699999988765 588899999999999888776663 67999843
No 301
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.39 E-value=25 Score=39.35 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=50.8
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcch
Q 008465 300 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN 373 (564)
Q Consensus 300 ~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~ 373 (564)
..+.+=++|++....+...|..++.+|..-. -..+ ..++..+--+++++..-+|-.|.++|..++...+.
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~--~r~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTN--SREL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccC--Hhhc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 3455566777788889999999998886421 1122 12677777788888888999999999999876543
No 302
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.36 E-value=7.1 Score=34.11 Aligned_cols=74 Identities=22% Similarity=0.242 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChh-hHHHHHHhCCHHHHHHhhCC---CCHHHHHHHHHHHHhccc
Q 008465 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNAD-NRVAIAEAGAIPLLVGLLST---PDSRTQEHAVTALLNLSI 328 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~~---~~~~i~~~A~~~L~nLs~ 328 (564)
....+..|.+.|+++++.+|..|+..|..+.+.... ....+....++..|++++.. .++.++..++..+.+.+.
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999986544 56667777888889999975 478899999999888864
No 303
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.59 E-value=14 Score=41.26 Aligned_cols=167 Identities=20% Similarity=0.164 Sum_probs=91.4
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHhcccCC-ccchhhhccCChHHHHHHHhcC----CHHHHHHHHHHHHhccCCc---
Q 008465 300 AIPLLVGLLSTPDSRTQEHAVTALLNLSICE-DNKGSIVSSGAVPSIVHVLRIG----SMEARENAAATLFSLSVID--- 371 (564)
Q Consensus 300 ~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~----~~e~~~~a~~~L~~Ls~~~--- 371 (564)
.+..+..++.+....- ..|...|..|.... ..- ...+..+..++++. ++.++..|+-++..|...-
T Consensus 396 av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-H-HHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 4556666776643222 23445555554322 111 22345566666542 4567777777776664321
Q ss_pred -------chhhHhhhcCChHHHHHhhc----cCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCC---Ccc
Q 008465 372 -------ENKVTIGASGAIPPLVTLLS----EGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEP---GGG 437 (564)
Q Consensus 372 -------~~~~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~ 437 (564)
..........+++.|...+. .++..-+..++.||+|+-. ...++.|..++... ...
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchH
Confidence 01122222356677777665 3466778889999999853 24677788887664 456
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcC--ChHHHHHHHHHHHH
Q 008465 438 MVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG--SPRNRENAAAVLVH 489 (564)
Q Consensus 438 ~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~k~~A~~~L~~ 489 (564)
++..|+.+|..++..... .+.+.|+.++.+. ++++|..|+.+|..
T Consensus 540 ~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPE-------KVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 788888888877544321 2456677777653 36777777665543
No 304
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.55 E-value=9 Score=41.31 Aligned_cols=105 Identities=22% Similarity=0.177 Sum_probs=75.9
Q ss_pred HHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcC--
Q 008465 416 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAG-- 493 (564)
Q Consensus 416 ~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~-- 493 (564)
..++. |.+..++.-+.+++..++..++.+|+.++..-......+-.|.+..|.+-+.+..+.+|..|+.+|..+-..
T Consensus 86 ~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 34444 778888888888899999999999999987765555566667888888888888899999999998776432
Q ss_pred CHHHHHHHHHcCCHHHHHHhhhc-CCHHHHHHHHHH
Q 008465 494 DQQYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQL 528 (564)
Q Consensus 494 ~~~~~~~~~~~g~i~~L~~Ll~~-~~~~~k~~A~~l 528 (564)
++++ .+...|+.++++ ++.++|+.|..-
T Consensus 165 neen-------~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 165 NEEN-------RIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred ChHH-------HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2222 133466666664 467777766543
No 305
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=84.24 E-value=3 Score=33.87 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=56.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhccc
Q 008465 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI 328 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~ 328 (564)
......+..|.++.+-+|..++..|+.+..... ...+...+++..+...|+++|+-+--+|+..|..|+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 456778888888888899999999999987655 2223334677888889999999999999999999875
No 306
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.24 E-value=38 Score=35.98 Aligned_cols=224 Identities=15% Similarity=0.059 Sum_probs=121.6
Q ss_pred CCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcC-CHHHHHHHHHHHHhccCCcchhhHhhh-cCChHHH
Q 008465 309 STPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGA-SGAIPPL 386 (564)
Q Consensus 309 ~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~L 386 (564)
++++..++..|+..|.|.+...+.+..-...-.+..++.-|.++ +.++.-.+..+|..+...-.++...-- ..+.-.+
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 45677899999999999987644333333344566676666555 678888888887776543333221111 1344556
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhcccChhHH--HHH--cCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHH---
Q 008465 387 VTLLSEGTQRGKKDAATALFNLCIYQGNKGK--AVR--AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAI--- 459 (564)
Q Consensus 387 v~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~--i~~--~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i--- 459 (564)
..+.++.+++.+..|..++..|+.......+ +.+ .+...+++-.|.++++.+.. |++.....+...-.+++.
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c~p~l~rke~~~~ 426 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTCYPNLVRKELYHL 426 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhcCchhHHHHHHHH
Confidence 6777888999999999988888876555443 332 23334444555666665443 344333333222122111
Q ss_pred ---------------Hhc------CChHHHHHHHhcC-------C-hHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHH
Q 008465 460 ---------------GAA------EAVPVLVEVIGNG-------S-PRNRENAAAVLVHLCAGD-QQYLAEAKELGVMGP 509 (564)
Q Consensus 460 ---------------~~~------g~i~~Lv~lL~~~-------~-~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~ 509 (564)
.+. ...+.+..++.+. + +.+++.|+..-.++--+- +..+...--.-+...
T Consensus 427 ~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ 506 (533)
T KOG2032|consen 427 FQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSS 506 (533)
T ss_pred HhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHH
Confidence 110 1112222222211 1 233444433322222211 122222222234567
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHH
Q 008465 510 LVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 510 L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
|..+.+++-+++++.|..++..+.
T Consensus 507 ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 507 LSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHccCCCchhHHHHHHHhhhHh
Confidence 777778888888888888887664
No 307
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.98 E-value=0.41 Score=48.14 Aligned_cols=44 Identities=20% Similarity=0.554 Sum_probs=35.4
Q ss_pred CCccCcccccCCC-CCE---EcCCCCcccHHHHHHHHH-hCCCCCCCCC
Q 008465 163 DDFRCPISLELMK-DPV---IVSTGQTYERSCIEKWLE-AGHRTCPKTQ 206 (564)
Q Consensus 163 ~~f~Cpic~~lm~-dPv---~~~cg~t~~r~ci~~~~~-~~~~~CP~~~ 206 (564)
-++.|-.|++.+- .|- .+||.|.|.-.|.+.++. .+.++||.|+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4689999998762 222 379999999999999986 4568999998
No 308
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=83.96 E-value=0.77 Score=47.85 Aligned_cols=175 Identities=13% Similarity=0.063 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhccCCcchhhHh-hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcc-----cChhH---HHHHcCChHH
Q 008465 356 ARENAAATLFSLSVIDENKVTI-GASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY-----QGNKG---KAVRAGVVPT 426 (564)
Q Consensus 356 ~~~~a~~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-----~~~~~---~i~~~g~i~~ 426 (564)
++..|.+++.-+.-++..+... .-..+...+...+.+..-..+..++|+++|++.- +..+. ++. .-.+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHH
Confidence 3445555555554444333322 2235566666666666667788899999998742 22111 111 112222
Q ss_pred HHHhc---cCCCcchHHHHHHHHHHhcCChhhHHH----HHhcCChHHHHH-HHhcCChHHHHHHHHHHHHHhcCCHH-H
Q 008465 427 LMHLL---TEPGGGMVDEALAILAILSSHPEGKAA----IGAAEAVPVLVE-VIGNGSPRNRENAAAVLVHLCAGDQQ-Y 497 (564)
Q Consensus 427 Lv~lL---~~~~~~~~~~al~~L~~L~~~~~~~~~----i~~~g~i~~Lv~-lL~~~~~~~k~~A~~~L~~L~~~~~~-~ 497 (564)
+...- ...+..+...|...|+|+...-+..+. ....+.+..+.. ..-.+.-.+|-+|+.++.||..+..- .
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 22221 114567888999999988754321111 111122222222 22335578899999999999885532 1
Q ss_pred HHHHHHcCCHHHHHHhhhcC-CHHHHHHHHHHHHH
Q 008465 498 LAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLER 531 (564)
Q Consensus 498 ~~~~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~ 531 (564)
...-+..-+.+.|..|+.+. +-++|..|+.+|..
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 22223334678888887654 77777777776654
No 309
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=83.81 E-value=7.3 Score=34.59 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhccc
Q 008465 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA-DNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSI 328 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~ 328 (564)
....+..|.+.|.+.++.+|..|+..|..+.+... .....+....++..|++++.. .+..++..++..+...+.
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999987544 356677888999999999988 688999999998888764
No 310
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=83.29 E-value=0.89 Score=37.96 Aligned_cols=33 Identities=24% Similarity=0.543 Sum_probs=26.7
Q ss_pred CCCCCccCcccccCCCCCEE--cCCCCcccHHHHH
Q 008465 160 VIPDDFRCPISLELMKDPVI--VSTGQTYERSCIE 192 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~--~~cg~t~~r~ci~ 192 (564)
.+.++-.|++|...+.+++. .||||.|...|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45667789999998887665 3999999999874
No 311
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=83.29 E-value=42 Score=33.08 Aligned_cols=176 Identities=16% Similarity=0.226 Sum_probs=101.0
Q ss_pred CChHHHHHHHhcC--CHHHHHHHHHHHHhccCCcch--------hhHhhhcCChHHHHHhhccCC----HHHHHHHHHHH
Q 008465 340 GAVPSIVHVLRIG--SMEARENAAATLFSLSVIDEN--------KVTIGASGAIPPLVTLLSEGT----QRGKKDAATAL 405 (564)
Q Consensus 340 g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~--------~~~i~~~g~i~~Lv~lL~~~~----~~~~~~a~~aL 405 (564)
|..+.+..++-.| +...-+.+..+|..|...+.. |-.+.-.+.+|.++.-+.+++ ......++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 5566666666555 445566677777777654322 222323366777777777766 23445677888
Q ss_pred HHhhcccChhHHHHHcCChHHHHHhccC----CCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHH
Q 008465 406 FNLCIYQGNKGKAVRAGVVPTLMHLLTE----PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRE 481 (564)
Q Consensus 406 ~nL~~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~ 481 (564)
..++.... .+.+..++..+.. +..+....++..|..-.. |+ .+...+..|+++|.++.+..|.
T Consensus 140 a~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 140 AQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHH
Confidence 87773321 1223333333322 122333334443332111 11 1224677899999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 008465 482 NAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 482 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
.+..+|..+-..-+-... ....++.+|.++++.+- -..|..+|...-
T Consensus 207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence 999999988765432222 44558899999997762 235555555443
No 312
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=83.10 E-value=55 Score=33.45 Aligned_cols=157 Identities=14% Similarity=0.122 Sum_probs=110.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHh-hChhhHHHHHHh-CC-HHHHHHhhCCC-----C--------HHHHHHHHH
Q 008465 258 KIEILLCKLTSGSPEDQRSAAGEIRLLAK-RNADNRVAIAEA-GA-IPLLVGLLSTP-----D--------SRTQEHAVT 321 (564)
Q Consensus 258 ~i~~Lv~~L~s~~~~~~~~al~~L~~L~~-~~~~~r~~i~~~-g~-i~~Lv~lL~~~-----~--------~~i~~~A~~ 321 (564)
.++.+-+.|.+.....+..+++-|..+.. .+......+... +. .+.|.+++... + +.+|...+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 36677778888888888888999998887 554544444443 43 45666666321 1 288888888
Q ss_pred HHHhccc--CCccchhhh-ccCChHHHHHHHhcCCHHHHHHHHHHHHh-ccCCc----chhhHhhhcCChHHHHHhhccC
Q 008465 322 ALLNLSI--CEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFS-LSVID----ENKVTIGASGAIPPLVTLLSEG 393 (564)
Q Consensus 322 ~L~nLs~--~~~~~~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~-Ls~~~----~~~~~i~~~g~i~~Lv~lL~~~ 393 (564)
.+..+.. +...+..+. ..+.+..+.+-|..++.++......+|.. +..+. ..|..+....++..|..+....
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 8777754 334466665 57778889999989889999888888874 44333 2355566678889999987766
Q ss_pred CH----HHHHHHHHHHHHhhcccCh
Q 008465 394 TQ----RGKKDAATALFNLCIYQGN 414 (564)
Q Consensus 394 ~~----~~~~~a~~aL~nL~~~~~~ 414 (564)
++ .+...+-..|..+|.++..
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCCc
Confidence 66 7788888888888875543
No 313
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=83.09 E-value=15 Score=33.26 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=82.2
Q ss_pred ChHHHHHhhccC-CHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHH
Q 008465 382 AIPPLVTLLSEG-TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIG 460 (564)
Q Consensus 382 ~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~ 460 (564)
.++.|+.+|+++ +..++..++++|+.|-.-++.+.+.+..+.-... -.+.+.......+... ... + ..+...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~~~~~~l~~~-~~~--~-~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDESTDISLPMM-GIS--P-SSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc---cccccccchhhHHhhc-cCC--C-chHHHH
Confidence 456778888876 5889999999999997777776664432111000 0111122222222111 111 1 222233
Q ss_pred hcCChHHHHHHHhcCC-hHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 008465 461 AAEAVPVLVEVIGNGS-PRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 461 ~~g~i~~Lv~lL~~~~-~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
-.-++..|+.+|++.+ ..-...++.++.++...-...+...+. -++|.++..+++.++..++.--.-|..|.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~-~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP-QVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH-HHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3346888999998876 334556777777776433222322222 38999999999887777776555554443
No 314
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=82.53 E-value=0.87 Score=36.95 Aligned_cols=27 Identities=22% Similarity=0.756 Sum_probs=23.2
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCCCCCC
Q 008465 181 STGQTYERSCIEKWLEAGHRTCPKTQQT 208 (564)
Q Consensus 181 ~cg~t~~r~ci~~~~~~~~~~CP~~~~~ 208 (564)
.|+|.|-..||.+|++. ...||.+.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 69999999999999995 5569998764
No 315
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.06 E-value=5.5 Score=42.66 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcC-CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHH
Q 008465 310 TPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVT 388 (564)
Q Consensus 310 ~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ 388 (564)
+.+.++++.|+-+|+-++.++ ...+...+++|... +.-+|.-.+.+|.-.+.....+ -++..|-.
T Consensus 563 D~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~a~diL~~ 628 (926)
T COG5116 563 DGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------VATDILEA 628 (926)
T ss_pred cCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------HHHHHHHH
Confidence 344455555555555444432 23445555555433 5566655555555444332211 23455555
Q ss_pred hhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCC
Q 008465 389 LLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEP 434 (564)
Q Consensus 389 lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~ 434 (564)
++.+.+.-++..|+-++.-+......+-.---.+++..+.+++.+.
T Consensus 629 L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 629 LMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 6666666677777777665544322221111224455555665543
No 316
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=81.86 E-value=1.6 Score=43.68 Aligned_cols=60 Identities=17% Similarity=0.383 Sum_probs=43.6
Q ss_pred CCCCCccCcccccCCCCCEE-cCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHH
Q 008465 160 VIPDDFRCPISLELMKDPVI-VSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQ 226 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~ 226 (564)
...+-+-||+|.+.|.-|+. -.-||.-|.+|=.+ -...||.|+.++.+. .++.+...++.
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~~---R~~amEkV~e~ 104 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGNI---RCRAMEKVAEA 104 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCccccccccH---HHHHHHHHHHh
Confidence 34567899999999999965 35599999999643 345799999988722 45555555444
No 317
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=81.59 E-value=14 Score=30.46 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=55.0
Q ss_pred HcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHH
Q 008465 420 RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVL 487 (564)
Q Consensus 420 ~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L 487 (564)
..+.+..|+..+..+.....+.++..|..|..++.+...+.+-|++..|.++-..-++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45678889999988777789999999999999999999999999999877776666666665554444
No 318
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=81.57 E-value=10 Score=33.11 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=61.3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCCC--CHHHHHHHHHHHHhccc
Q 008465 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLSTP--DSRTQEHAVTALLNLSI 328 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~--~~~i~~~A~~~L~nLs~ 328 (564)
....+..|.+.|+++++.+|..|+..|..+.+. .......+...+++..|+.+++.. .+.++..++..+...+.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999876 355667778889999999999874 23488888888877754
No 319
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.21 E-value=11 Score=33.25 Aligned_cols=73 Identities=12% Similarity=0.190 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCC------CCHHHHHHHHHHHHhccc
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLST------PDSRTQEHAVTALLNLSI 328 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~------~~~~i~~~A~~~L~nLs~ 328 (564)
...+..+.+.|+++++.++..|+..|..+.+. .......+...+++.-|++++.. .+..++...+..+...+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999874 35566778888999999999963 467899988888877653
No 320
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.12 E-value=9.7 Score=41.99 Aligned_cols=128 Identities=23% Similarity=0.132 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcC
Q 008465 396 RGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG 475 (564)
Q Consensus 396 ~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~ 475 (564)
++.+-++..+..|-..+..- .++ .|.+..|+.-..+++..++..++.+|+.+.+....+...+-.+....+..-|.+.
T Consensus 61 RIl~fla~fv~sl~q~d~e~-DlV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEE-DLV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHHhhhccCchh-hHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc
Confidence 44444444444443322222 133 3777777777777888999999999999988554444444446677777778888
Q ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhc-CCHHHHHHHHHHHH
Q 008465 476 SPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLE 530 (564)
Q Consensus 476 ~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~-~~~~~k~~A~~lL~ 530 (564)
.|.+|..|+.+|..+-...... +..++..+..++++ +++++|+.|...+.
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 8999999999998886321100 12356677777765 47888888766543
No 321
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=80.98 E-value=24 Score=37.28 Aligned_cols=258 Identities=12% Similarity=0.088 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhccc-----C-CccchhhhccCChHHH
Q 008465 272 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI-----C-EDNKGSIVSSGAVPSI 345 (564)
Q Consensus 272 ~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~-----~-~~~~~~i~~~g~i~~L 345 (564)
.++.+++..|..++..-.-.+..+++.| ..+...+...++.++.++...|-.+-. + ++..+.-...|.+-.+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~l~--RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLMELG--RVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 4778888888888865444444444333 344445566789999999888877632 1 1221211122222221
Q ss_pred HH------HH-hcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhcccChhHH
Q 008465 346 VH------VL-RIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL-SEGTQRGKKDAATALFNLCIYQGNKGK 417 (564)
Q Consensus 346 v~------lL-~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~~~~~~~~ 417 (564)
.- .+ ++..+..+..++.++.+++...-++---++....+.+..=. ++.+.-++..|.+++.-+..++..+..
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d 427 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD 427 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence 11 11 11123345566677777654321111000000111111111 222334567788888888888777654
Q ss_pred HH-HcCChHHHHHhccCCCcchHHHHHHHHHHhcC-----Chhh---HHHHHhcCChHHHHHHH---hcCChHHHHHHHH
Q 008465 418 AV-RAGVVPTLMHLLTEPGGGMVDEALAILAILSS-----HPEG---KAAIGAAEAVPVLVEVI---GNGSPRNRENAAA 485 (564)
Q Consensus 418 i~-~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~-----~~~~---~~~i~~~g~i~~Lv~lL---~~~~~~~k~~A~~ 485 (564)
.. -..+...+...|.+.....+..+.+.++|++. .|.. ...+... .+..+...- .....+++.+|+.
T Consensus 428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 32 34556666666766677889999999998863 2332 2222211 122332222 1234788999999
Q ss_pred HHHHHhcCCHHHHHHHHHc-------CCHHHHH-HhhhcCCHHHHHHHHHHHHHHHhhH
Q 008465 486 VLVHLCAGDQQYLAEAKEL-------GVMGPLV-DLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 486 ~L~~L~~~~~~~~~~~~~~-------g~i~~L~-~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
.|.|+.. ..+.+.+. |.+..+. ...-.+.-.+|=+|+-++.||-+..
T Consensus 507 aLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 507 ALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 9998753 22222222 2222222 2223446778888898998887654
No 322
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=80.98 E-value=0.41 Score=44.86 Aligned_cols=47 Identities=26% Similarity=0.567 Sum_probs=35.5
Q ss_pred CCccCccccc-CCCCCE--Ec--C-CCCcccHHHHHHHHHhCCCCCC--CCCCCC
Q 008465 163 DDFRCPISLE-LMKDPV--IV--S-TGQTYERSCIEKWLEAGHRTCP--KTQQTL 209 (564)
Q Consensus 163 ~~f~Cpic~~-lm~dPv--~~--~-cg~t~~r~ci~~~~~~~~~~CP--~~~~~l 209 (564)
.+-.||+|.. .+-+|= ++ | |-|..|-+|+.+.|..|...|| -|++-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 4568999984 333442 22 4 9999999999999999999999 565544
No 323
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=80.80 E-value=70 Score=32.67 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=108.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhccc-CCc-cchhhh-c-cCChHHHHHHHhcC----C---------HHHHHHHHHH
Q 008465 301 IPLLVGLLSTPDSRTQEHAVTALLNLSI-CED-NKGSIV-S-SGAVPSIVHVLRIG----S---------MEARENAAAT 363 (564)
Q Consensus 301 i~~Lv~lL~~~~~~i~~~A~~~L~nLs~-~~~-~~~~i~-~-~g~i~~Lv~lL~~~----~---------~e~~~~a~~~ 363 (564)
+..+.+.|++....+...++..|..+.. +.. ....+. . .--.+.+.+++... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788888998888888899999999977 442 233333 2 23344566666321 1 1677777766
Q ss_pred HHhccCCc--chhhHhhh-cCChHHHHHhhccCCHHHHHHHHHHHHH-hhcccC----hhHHHHHcCChHHHHHhccCCC
Q 008465 364 LFSLSVID--ENKVTIGA-SGAIPPLVTLLSEGTQRGKKDAATALFN-LCIYQG----NKGKAVRAGVVPTLMHLLTEPG 435 (564)
Q Consensus 364 L~~Ls~~~--~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~n-L~~~~~----~~~~i~~~g~i~~Lv~lL~~~~ 435 (564)
+..+.... ..+..+.. .+.+..+.+-|..++.++....+.+|.. +..+.. .|..+.....+..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 65554432 34555554 4788999999999889999999999985 444332 3445667778899999877766
Q ss_pred c----chHHHHHHHHHHhcCChhh
Q 008465 436 G----GMVDEALAILAILSSHPEG 455 (564)
Q Consensus 436 ~----~~~~~al~~L~~L~~~~~~ 455 (564)
+ .+.+.+-..|..+|.++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 6 8899999999999976643
No 324
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=80.70 E-value=2.1 Score=32.95 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=22.8
Q ss_pred CccCcccccCC-----CCCEEc--CCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 164 DFRCPISLELM-----KDPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm-----~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.-.|.||.+-. -+|.+. .|+.-.||.|++--.+.|+..||.|+.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 35789998743 245443 578889999999888899999999987654
No 325
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=80.36 E-value=1.5 Score=51.09 Aligned_cols=44 Identities=30% Similarity=0.604 Sum_probs=37.6
Q ss_pred CCCccCcccccCCC-CCEEcCCCCcccHHHHHHHHHhCCCCCCCCC
Q 008465 162 PDDFRCPISLELMK-DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQ 206 (564)
Q Consensus 162 p~~f~Cpic~~lm~-dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~ 206 (564)
-..+.|+||++.++ .--+.-|||-+|..|+..|... ...||.|.
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 45579999999998 5667789999999999999984 66799986
No 326
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.31 E-value=11 Score=37.50 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=87.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhc---CChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHH
Q 008465 342 VPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS---GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKA 418 (564)
Q Consensus 342 i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i 418 (564)
+...+..|.+.+++....++..+..|+..+. .+... .+|-.+++-+++....+-+.|+.++..+...-.+...-
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~---e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHP---ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777777765543 22222 45666677777777788899999999887765554432
Q ss_pred HHcCChHHHHHhcc----CCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHH
Q 008465 419 VRAGVVPTLMHLLT----EPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 489 (564)
Q Consensus 419 ~~~g~i~~Lv~lL~----~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~ 489 (564)
....++..|. .++.-+++.|-.+|..+..+-... -+++.|...++...+.++..++....+
T Consensus 167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccc
Confidence 2333333332 245568899999998887654221 256777777888888888777644433
No 327
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.69 E-value=6.5 Score=43.15 Aligned_cols=108 Identities=16% Similarity=0.078 Sum_probs=78.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHH------cCChHHHHHhccCCCcchHHHHHHHHHHhcCCh---
Q 008465 383 IPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVR------AGVVPTLMHLLTEPGGGMVDEALAILAILSSHP--- 453 (564)
Q Consensus 383 i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~--- 453 (564)
...++++|.+++-..+-..+.+++|+..+.....++++ ...+..|++-|.+.++.++..|+.++..+++-+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 56778889888888888888899999876554444543 235566666677788999999999999887654
Q ss_pred -hhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 008465 454 -EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 495 (564)
Q Consensus 454 -~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~ 495 (564)
..|.. ++...+.-|.+.+.-+|.+|+.++..|-...|
T Consensus 381 ~~~r~e-----v~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 381 VGRRHE-----VIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred cchHHH-----HHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 22333 34556667788888899999998888765443
No 328
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=79.42 E-value=31 Score=38.26 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=93.8
Q ss_pred HHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHH-hcCCHHHHHHHHHHHHhccCCcchh
Q 008465 296 AEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVL-RIGSMEARENAAATLFSLSVIDENK 374 (564)
Q Consensus 296 ~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL-~~~~~e~~~~a~~~L~~Ls~~~~~~ 374 (564)
+...++|.|...+++.+..+|+.++.++..++..-+ -..++.-++|.|..+- +..+..++.+++.++..+. +..
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~l 460 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRL 460 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHH
Confidence 445678899999999999999999999998875433 3344455577776654 3447888999999998887 211
Q ss_pred hHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchH
Q 008465 375 VTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMV 439 (564)
Q Consensus 375 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 439 (564)
....-...+.++.+-.+..++.+....+.+..++.....+...+....++|.++.+...+.....
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~ 525 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGE 525 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHH
Confidence 11111233445555555668888888888888877665554444455788888887766544433
No 329
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.36 E-value=8.6 Score=42.23 Aligned_cols=109 Identities=19% Similarity=0.164 Sum_probs=73.3
Q ss_pred hHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHh------cCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH
Q 008465 424 VPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGA------AEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQY 497 (564)
Q Consensus 424 i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~ 497 (564)
...++.+|.+.+-.++-..+.+.+|+..+-....++.+ ...+..|++-|.+.+|-.|..|..++..+|.-+...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 34577888887777887788888888754322222322 124556666667778999999999999998755432
Q ss_pred HHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 498 LAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 498 ~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
...-. .++.....-+++-+..+|++|..++.-|--
T Consensus 381 ~~~r~--ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 381 VGRRH--EVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cchHH--HHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 21111 144556667788889999999998865543
No 330
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=78.27 E-value=1.3 Score=43.35 Aligned_cols=43 Identities=30% Similarity=0.680 Sum_probs=33.2
Q ss_pred CccCcccccCCC----CCEEcCCCCcccHHHHHHHHHhCCCCCCCCCC
Q 008465 164 DFRCPISLELMK----DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQ 207 (564)
Q Consensus 164 ~f~Cpic~~lm~----dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~ 207 (564)
++-||||.+.+. +|..++|||+.-..|.+.....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 466999998663 66678999987767666666656 99999977
No 331
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=78.22 E-value=54 Score=34.07 Aligned_cols=102 Identities=9% Similarity=-0.006 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC-----CHHHHHHHHHHHHhccc-CCccchhh-hccCCh
Q 008465 270 SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP-----DSRTQEHAVTALLNLSI-CEDNKGSI-VSSGAV 342 (564)
Q Consensus 270 ~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-----~~~i~~~A~~~L~nLs~-~~~~~~~i-~~~g~i 342 (564)
+..+..+|+++|.++..++...+....+......+++.+... ...++..=++.|.-|.. ....|.++ ...+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 356778899999999999999999999888777777765431 12333444455554432 33445554 478999
Q ss_pred HHHHHHHhcC---------C---HH---HHHHHHHHHHhccCCc
Q 008465 343 PSIVHVLRIG---------S---ME---ARENAAATLFSLSVID 371 (564)
Q Consensus 343 ~~Lv~lL~~~---------~---~e---~~~~a~~~L~~Ls~~~ 371 (564)
+.+.++|.+. + ++ ....++.+++|+..+.
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 9999999642 1 12 3345667778887654
No 332
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=77.86 E-value=70 Score=40.23 Aligned_cols=134 Identities=12% Similarity=0.037 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHhcccCCccchhhh----ccCChHHHHHHHhcC-CHHHHHHHHHHHHhccCCcchhhHhhhcCChH
Q 008465 310 TPDSRTQEHAVTALLNLSICEDNKGSIV----SSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAIP 384 (564)
Q Consensus 310 ~~~~~i~~~A~~~L~nLs~~~~~~~~i~----~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~ 384 (564)
+.+..+...|+..|..++..--.++.+. ....+.++..++.+. +.++++..+.++.++..... .-..+ +-+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nIkS-GWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNVKS-GWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhhhc-CcH
Confidence 3467788889988888876332233222 356788888877654 78999999999988854321 11122 445
Q ss_pred HHHHhhc----cCCHHHHHHHHHHHHHhhcccChhHHHHH--cCChHHHHHhcc----C-CCcchHHHHHHHHHHh
Q 008465 385 PLVTLLS----EGTQRGKKDAATALFNLCIYQGNKGKAVR--AGVVPTLMHLLT----E-PGGGMVDEALAILAIL 449 (564)
Q Consensus 385 ~Lv~lL~----~~~~~~~~~a~~aL~nL~~~~~~~~~i~~--~g~i~~Lv~lL~----~-~~~~~~~~al~~L~~L 449 (564)
.++.++. +..+.+...|..++..+..+.= ..+.. .+.+..++..|. . .+.++--.|+..|+++
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f--~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF--PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh--hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 5555554 3456777777777776553211 11111 234444444432 2 2355666677777755
No 333
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=77.66 E-value=11 Score=34.04 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=76.9
Q ss_pred CHHHHHHhhCCC-CHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhh
Q 008465 300 AIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIG 378 (564)
Q Consensus 300 ~i~~Lv~lL~~~-~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~ 378 (564)
..+.|+++|+.+ +..+|..++++|+.|-.-+..+-+....+. +.-. -...+........ .....+ ..-....
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~~~~l-~~~~~~---~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDESTDISL-PMMGIS---PSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccchhhHH-hhccCC---CchHHHH
Confidence 456788888875 689999999999999443333222111100 0000 0000111111111 111111 1122222
Q ss_pred hcCChHHHHHhhccCCH-HHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhc
Q 008465 379 ASGAIPPLVTLLSEGTQ-RGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILS 450 (564)
Q Consensus 379 ~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~ 450 (564)
-..++..|+..|++.+- .-...++.++.++......+..-.=..++|.++..++......++..+.-|+.|.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33467888888887753 3334667777777654443332223468888888888766677777766666553
No 334
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=77.22 E-value=47 Score=36.82 Aligned_cols=169 Identities=18% Similarity=0.073 Sum_probs=93.1
Q ss_pred cCChHHHHHHHhcCCHHHHHHHHHHHHhccCC--cchhhHhhhcCChHHHHHhhccC----CHHHHHHHHHHHHHhhc--
Q 008465 339 SGAVPSIVHVLRIGSMEARENAAATLFSLSVI--DENKVTIGASGAIPPLVTLLSEG----TQRGKKDAATALFNLCI-- 410 (564)
Q Consensus 339 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~~-- 410 (564)
..++..+.+.+.++..... .++.++..+... .+.. ..+..+.+++.++ ...++..|+-++++|..
T Consensus 356 ~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~Pt~------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~ 428 (574)
T smart00638 356 PPALKFIKQWIKNKKITPL-EAAQLLAVLPHTARYPTE------EILKALFELAESPEVQKQPYLRESALLAYGSLVRRY 428 (574)
T ss_pred HHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhcCCH------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 3466677777777642211 122222222111 1111 2467777777754 44566666666666653
Q ss_pred --ccChhHHHHHcCChHHHHHhccC----CCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHh-c--CChHHHH
Q 008465 411 --YQGNKGKAVRAGVVPTLMHLLTE----PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG-N--GSPRNRE 481 (564)
Q Consensus 411 --~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~--~~~~~k~ 481 (564)
..+.....+....++.|...|.. .+..-+..++.+|+|+... ..++.+..++. . .+..+|.
T Consensus 429 c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~ 498 (574)
T smart00638 429 CVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRL 498 (574)
T ss_pred hcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHH
Confidence 22222122233466666665533 3344455677777777643 24555666665 2 2467899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC--CHHHHHHHHHHHHHH
Q 008465 482 NAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG--TDRGKRKAAQLLERM 532 (564)
Q Consensus 482 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~--~~~~k~~A~~lL~~l 532 (564)
.|+.+|..+....+.. +.+.|+.+..+. ++++|..|..+|-..
T Consensus 499 ~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 499 AAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 9999999887544432 345666776654 566676666655444
No 335
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.15 E-value=14 Score=39.65 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=51.2
Q ss_pred cCChHHHHHh-ccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHh-cCChHHHHHHHHHHHHHhcCCH
Q 008465 421 AGVVPTLMHL-LTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQ 495 (564)
Q Consensus 421 ~g~i~~Lv~l-L~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~k~~A~~~L~~L~~~~~ 495 (564)
.|+|..|+.. .++.+.+++..|+-+|+-+|..+ ...++..+++|. +.++.+|-..+.+|.-.|.+..
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G 618 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTG 618 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc
Confidence 4678888888 67788899999999998776543 246677777775 4668888888888888887765
No 336
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.96 E-value=13 Score=32.48 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=60.0
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHhhhc---CCHHHHHHHHHHHHHHHhhHHH
Q 008465 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ-YLAEAKELGVMGPLVDLAQN---GTDRGKRKAAQLLERMSRFIEQ 538 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~Ll~~---~~~~~k~~A~~lL~~l~~~~~~ 538 (564)
++..|-.-|+++++.++..|+.+|-.+..+.+. ....+....++..|+.++.. .+..++.++..++.........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 566777788889999999999999888877655 56666666788889999975 3788999999999888765544
No 337
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.72 E-value=47 Score=38.26 Aligned_cols=135 Identities=19% Similarity=0.141 Sum_probs=83.2
Q ss_pred hCCHHHHHHhhC------C--CCHHHHHHHHHHHHhccc---CCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHh
Q 008465 298 AGAIPLLVGLLS------T--PDSRTQEHAVTALLNLSI---CEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFS 366 (564)
Q Consensus 298 ~g~i~~Lv~lL~------~--~~~~i~~~A~~~L~nLs~---~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~ 366 (564)
.|+++.++..|. . .++.-.+-|+.++++|+. ....-+..++.-.+..+.-.++++..-+|..|++++..
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 467778888876 2 245566778888888862 11111223344455566666778888899999999999
Q ss_pred ccCCcchhhHhhhcCChHHHHHhhc-cCCHHHHHHHHHHHHHhhcccChhHHHHH---cCChHHHHHhccC
Q 008465 367 LSVIDENKVTIGASGAIPPLVTLLS-EGTQRGKKDAATALFNLCIYQGNKGKAVR---AGVVPTLMHLLTE 433 (564)
Q Consensus 367 Ls~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~i~~---~g~i~~Lv~lL~~ 433 (564)
++..+- +..-.-..++......|. +.+..++..|+-||..+..+.+....-++ .+.++.|+.+...
T Consensus 489 ~~~~df-~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 489 FSSIDF-KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHhccC-CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 984331 111112245566666666 55678999999999988776654322222 2344445555544
No 338
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=76.71 E-value=57 Score=31.37 Aligned_cols=130 Identities=15% Similarity=0.104 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCc------------------chHHHHHHHHHHhcCChhhH
Q 008465 395 QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGG------------------GMVDEALAILAILSSHPEGK 456 (564)
Q Consensus 395 ~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~------------------~~~~~al~~L~~L~~~~~~~ 456 (564)
......++..+..|...+++...+...+.++.+.+.|..-++ .+...=...++.|+.++.|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 455567788888888888887777788888888887754210 12223356778899999999
Q ss_pred HHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 457 AAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 457 ~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
..+-+.+....+..+....+. -.....+|.+|=...+... =..|-..+.+++..+|..|...|+.+.+
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~--------R~iLsKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHP--------RIILSKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999876542 1112224444422221122 2345567788999999999999987653
No 339
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.53 E-value=24 Score=37.45 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=87.5
Q ss_pred CChHHHHHhh----ccCCHHHHHHHHHHHHHhhcccChhH-HHHHcCChHHHHH-hccCCCcchHHHHHHHHHHhcCChh
Q 008465 381 GAIPPLVTLL----SEGTQRGKKDAATALFNLCIYQGNKG-KAVRAGVVPTLMH-LLTEPGGGMVDEALAILAILSSHPE 454 (564)
Q Consensus 381 g~i~~Lv~lL----~~~~~~~~~~a~~aL~nL~~~~~~~~-~i~~~g~i~~Lv~-lL~~~~~~~~~~al~~L~~L~~~~~ 454 (564)
|.+..++..+ .+++...+..|+..|.|.+...+.+. .... -.+..++. +....+.+|+-.++.+|..+.....
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 4444444444 44567889999999999998844433 2322 23333333 3344567888888888887664433
Q ss_pred hHHHHHhc---CChHHHHHHHhcCChHHHHHHHHHHHH---HhcCCHH--HHHHHHHcCCHHHHHHhhhcCCHHHHHHHH
Q 008465 455 GKAAIGAA---EAVPVLVEVIGNGSPRNRENAAAVLVH---LCAGDQQ--YLAEAKELGVMGPLVDLAQNGTDRGKRKAA 526 (564)
Q Consensus 455 ~~~~i~~~---g~i~~Lv~lL~~~~~~~k~~A~~~L~~---L~~~~~~--~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~ 526 (564)
+... .. .+.-.+-.+..+.+++.|-.|...... +|.++-+ +...+. +-..+|+-.+++.++.+-..+.
T Consensus 333 ~~~l--~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~--k~~~~lllhl~d~~p~va~ACr 408 (533)
T KOG2032|consen 333 NDDL--ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVK--KRLAPLLLHLQDPNPYVARACR 408 (533)
T ss_pred hcch--hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHH--hccccceeeeCCCChHHHHHHH
Confidence 3221 12 234455666777788888887655544 4444322 222222 2334666667788887776666
Q ss_pred HHHHHHHh
Q 008465 527 QLLERMSR 534 (564)
Q Consensus 527 ~lL~~l~~ 534 (564)
..++.+..
T Consensus 409 ~~~~~c~p 416 (533)
T KOG2032|consen 409 SELRTCYP 416 (533)
T ss_pred HHHHhcCc
Confidence 66665554
No 340
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.64 E-value=19 Score=35.85 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchh
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 335 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~ 335 (564)
...+...+..|.+.+|+..+.++..|+.|+...++....... ..|..+++-+++....+-..|+.++..+...-.+ .
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--~ 163 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--S 163 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--H
Confidence 467888999999999999999999999998765544333322 3667778888888888889999888887542221 1
Q ss_pred hhccCChHHHHH-HHhcC---CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 008465 336 IVSSGAVPSIVH-VLRIG---SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLC 409 (564)
Q Consensus 336 i~~~g~i~~Lv~-lL~~~---~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 409 (564)
|.. .++.++. +|..+ +.-+++.|-.+|..+...-. ...+++.|+..+.+.++.++..++....+..
T Consensus 164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt------p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT------PQKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 211 2333433 33332 45578888888877753311 1134677777778878888877776665543
No 341
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=75.61 E-value=45 Score=34.55 Aligned_cols=239 Identities=15% Similarity=0.080 Sum_probs=126.5
Q ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcC-CHHHHHHH-HHHHHhccCCcchhhHh
Q 008465 301 IPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG-SMEARENA-AATLFSLSVIDENKVTI 377 (564)
Q Consensus 301 i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~-~~e~~~~a-~~~L~~Ls~~~~~~~~i 377 (564)
|..++.=|.+ ....+|..++--|+.-+.++.-+..+...|.+..+++.+... .......+ +.+++-|+.+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 3566665653 456788888888888777888889999999999999999443 33244444 44555555555455444
Q ss_pred hhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhcc---------CCCcchHHHHHHHHH
Q 008465 378 GASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLT---------EPGGGMVDEALAILA 447 (564)
Q Consensus 378 ~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~---------~~~~~~~~~al~~L~ 447 (564)
...+....++.++... ........- .....+..+.. .+.+..+...+. .....-+.-|+.+|.
T Consensus 103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le 175 (361)
T PF07814_consen 103 LDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALE 175 (361)
T ss_pred hchhHHHHHHHHhccccccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHHHH
Confidence 4556777778888711 000000000 00000111111 111111111210 112223444555555
Q ss_pred Hhc---------------CChhhHHHHHhcCChHHHHHHHhc----C-------C-----hHHHHHHHHHHHHHhcCCHH
Q 008465 448 ILS---------------SHPEGKAAIGAAEAVPVLVEVIGN----G-------S-----PRNRENAAAVLVHLCAGDQQ 496 (564)
Q Consensus 448 ~L~---------------~~~~~~~~i~~~g~i~~Lv~lL~~----~-------~-----~~~k~~A~~~L~~L~~~~~~ 496 (564)
.++ ..+.-++.+.+.|++..+++++.. . . ...-+.+..+|-+.+..+..
T Consensus 176 ~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~ 255 (361)
T PF07814_consen 176 SLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEE 255 (361)
T ss_pred HHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCcc
Confidence 553 111235666677889999998851 1 1 12245677888887766665
Q ss_pred HHHHHHHc--CCH-HHHHHhhhcCCHHH---HHHHHHHHHHHHhhHHHHHHHhhch
Q 008465 497 YLAEAKEL--GVM-GPLVDLAQNGTDRG---KRKAAQLLERMSRFIEQQKQAQVQT 546 (564)
Q Consensus 497 ~~~~~~~~--g~i-~~L~~Ll~~~~~~~---k~~A~~lL~~l~~~~~~~~~~~~~~ 546 (564)
+....... +.. ..+..++....... ...+..++-|++...+..-.+.++.
T Consensus 256 nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~ 311 (361)
T PF07814_consen 256 NQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASP 311 (361)
T ss_pred chHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhh
Confidence 55444432 333 33333333333333 4566777777777774444444443
No 342
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=75.36 E-value=1.2e+02 Score=32.28 Aligned_cols=146 Identities=13% Similarity=0.029 Sum_probs=89.0
Q ss_pred ChHHHHHhhcc-CCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHH-HHHHHhcCChhhHHHH
Q 008465 382 AIPPLVTLLSE-GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEAL-AILAILSSHPEGKAAI 459 (564)
Q Consensus 382 ~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al-~~L~~L~~~~~~~~~i 459 (564)
.+..+++.|.+ .+...++.|++.|..++.....+-.=-..-+|..+++.-.+..+++...|. .++..++.+..-+
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence 35667777776 678889999999999998766553322334566666666665555544443 3344455443222
Q ss_pred HhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 460 GAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 460 ~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
.|..+..++.+.+...--.++..+-.++..-+..--.-+-..+.|.++.-..+.+..+|+.|...|-.+..
T Consensus 407 ----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 ----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred ----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 33444444444343333334445566665433222222234688999999999999999999998876664
No 343
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=75.18 E-value=48 Score=37.06 Aligned_cols=148 Identities=20% Similarity=0.171 Sum_probs=81.7
Q ss_pred HHHHHHhhCC----CCHHHHHHHHHHHHhccc----CC------ccchhhhccCChHHHHHHHh----cCCHHHHHHHHH
Q 008465 301 IPLLVGLLST----PDSRTQEHAVTALLNLSI----CE------DNKGSIVSSGAVPSIVHVLR----IGSMEARENAAA 362 (564)
Q Consensus 301 i~~Lv~lL~~----~~~~i~~~A~~~L~nLs~----~~------~~~~~i~~~g~i~~Lv~lL~----~~~~e~~~~a~~ 362 (564)
+..+..++++ .++.++..|+-+++.|.. .. ...........++.+...|. .++.+-+..++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 3445555654 355677777777777643 21 11223334556677776665 345677778888
Q ss_pred HHHhccCCcchhhHhhhcCChHHHHHhhccC---CHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccC--CCcc
Q 008465 363 TLFSLSVIDENKVTIGASGAIPPLVTLLSEG---TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE--PGGG 437 (564)
Q Consensus 363 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~ 437 (564)
+|.|+-. ...++.|..++... +..++..|++||..+......+ +.+.|++++.+ .+.+
T Consensus 513 aLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~E 575 (618)
T PF01347_consen 513 ALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPE 575 (618)
T ss_dssp HHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HH
T ss_pred HhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChh
Confidence 8888842 24677788877765 6788899999999885544332 34556777766 3455
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhc
Q 008465 438 MVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN 474 (564)
Q Consensus 438 ~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~ 474 (564)
++..|..+|. -.+|. ...+..+...+..
T Consensus 576 vRiaA~~~lm--~~~P~-------~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 576 VRIAAYLILM--RCNPS-------PSVLQRIAQSLWN 603 (618)
T ss_dssp HHHHHHHHHH--HT----------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHH--hcCCC-------HHHHHHHHHHHhh
Confidence 6666654444 23332 1235555666643
No 344
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=75.11 E-value=14 Score=32.79 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=60.4
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhc-CCHHHHHHHHHHHHHHHhhHH
Q 008465 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLERMSRFIE 537 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~Ll~~-~~~~~k~~A~~lL~~l~~~~~ 537 (564)
++..|..-|.++++.++..|+.+|-.+..+.+ .....+....++..|..++.. .+..++.++..++........
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 56677777888899999999999988877665 466777788899999999988 688999999998888765443
No 345
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.97 E-value=2.2 Score=43.08 Aligned_cols=50 Identities=28% Similarity=0.531 Sum_probs=38.9
Q ss_pred CccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 008465 164 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAV 214 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l 214 (564)
...|.+++..+.+||.+..|..|+...|-.|++. +.+-|.+++++.-.++
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dL 89 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDL 89 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccc
Confidence 4578899999999999999999999999999984 3344555555544433
No 346
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=74.94 E-value=1.8e+02 Score=34.21 Aligned_cols=133 Identities=19% Similarity=0.147 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHhcccCCccc--hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchh---------------
Q 008465 312 DSRTQEHAVTALLNLSICEDNK--GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK--------------- 374 (564)
Q Consensus 312 ~~~i~~~A~~~L~nLs~~~~~~--~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~--------------- 374 (564)
...+|..|+.+++.++...+.. +.+...=+-..+...+-+....+|..|.+++.....-..|.
T Consensus 441 G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV 520 (1133)
T KOG1943|consen 441 GQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSV 520 (1133)
T ss_pred ccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhh
Confidence 5679999999999987532211 11211111222333344556678888888887654321111
Q ss_pred -----------hHhhh-cCChHHHHHhhccC-----CHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcc
Q 008465 375 -----------VTIGA-SGAIPPLVTLLSEG-----TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGG 437 (564)
Q Consensus 375 -----------~~i~~-~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 437 (564)
..+.+ .|...++++.+-.. +..+++.++++|.+|+.. ..+....+.+++++......+..
T Consensus 521 ~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~---~pk~~a~~~L~~lld~~ls~~~~ 597 (1133)
T KOG1943|consen 521 TNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT---EPKYLADYVLPPLLDSTLSKDAS 597 (1133)
T ss_pred hhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh---hHHhhcccchhhhhhhhcCCChH
Confidence 01222 25666666665433 789999999999998764 33455667888888887777766
Q ss_pred hHHHHHHHHH
Q 008465 438 MVDEALAILA 447 (564)
Q Consensus 438 ~~~~al~~L~ 447 (564)
++.-+..+.+
T Consensus 598 ~r~g~~la~~ 607 (1133)
T KOG1943|consen 598 MRHGVFLAAG 607 (1133)
T ss_pred HhhhhHHHHH
Confidence 6554443333
No 347
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=74.69 E-value=17 Score=32.09 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=59.4
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHhhhc-CCHHHHHHHHHHHHHHHhhH
Q 008465 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGD-QQYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~Ll~~-~~~~~k~~A~~lL~~l~~~~ 536 (564)
++..|..-|.++++.++..|+.+|-.+..+. ......+.+.+++..|..++.. .++.+++++..++..-....
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 5677778888899999999998888877764 4567778888999999999974 57889999999888777544
No 348
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=74.59 E-value=92 Score=30.70 Aligned_cols=213 Identities=16% Similarity=0.158 Sum_probs=112.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHhh----ChhhHHHHHH------h-CCHHHHHHhhCCC--CHHHHHHHHHHHHhcccC
Q 008465 263 LCKLTSGSPEDQRSAAGEIRLLAKR----NADNRVAIAE------A-GAIPLLVGLLSTP--DSRTQEHAVTALLNLSIC 329 (564)
Q Consensus 263 v~~L~s~~~~~~~~al~~L~~L~~~----~~~~r~~i~~------~-g~i~~Lv~lL~~~--~~~i~~~A~~~L~nLs~~ 329 (564)
+..|.+..+.+-..|++.|..+-.. ++..+..+.+ . |..+.+..++-.+ ++...+.++..|..|...
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~ 92 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPL 92 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhcC
Confidence 4445555555555555555554321 2222222221 1 3333333333222 334456667777777543
Q ss_pred Cc--------cchhhhccCChHHHHHHHhcCC----HHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccC----
Q 008465 330 ED--------NKGSIVSSGAVPSIVHVLRIGS----MEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG---- 393 (564)
Q Consensus 330 ~~--------~~~~i~~~g~i~~Lv~lL~~~~----~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---- 393 (564)
+. +|-.+.--+.+|.++.-+.+++ ......+|..|..++.... ...+..++.....+
T Consensus 93 ~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~ya~~~fr~ 165 (262)
T PF14225_consen 93 PDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSYAKGRFRD 165 (262)
T ss_pred CCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHHHhcCCCC
Confidence 22 1222222345566666666665 1334456677777763211 12233333333322
Q ss_pred CHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHh
Q 008465 394 TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG 473 (564)
Q Consensus 394 ~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~ 473 (564)
..+....++..|..-... + .+...+..|+.+|.++-+.++...+.+|..+-...+.+.. ...+.+..|+++|+
T Consensus 166 ~~dfl~~v~~~l~~~f~P-~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~ 238 (262)
T PF14225_consen 166 KDDFLSQVVSYLREAFFP-D-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQ 238 (262)
T ss_pred HHHHHHHHHHHHHHHhCc-h-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhC
Confidence 234455555555533221 1 1234566789999888889999999999988766554433 44457899999997
Q ss_pred cCChHHHHHHHHHHHHHhc
Q 008465 474 NGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 474 ~~~~~~k~~A~~~L~~L~~ 492 (564)
++- -..|..+|-++..
T Consensus 239 t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 239 TDL---WMEALEVLDEIVT 254 (262)
T ss_pred Ccc---HHHHHHHHHHHHh
Confidence 654 5556666655543
No 349
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=74.27 E-value=79 Score=35.00 Aligned_cols=131 Identities=19% Similarity=0.078 Sum_probs=75.7
Q ss_pred ChHHHHHHHhcC----CHHHHHHHHHHHHhccC----CcchhhHhhhcCChHHHHHhhcc----CCHHHHHHHHHHHHHh
Q 008465 341 AVPSIVHVLRIG----SMEARENAAATLFSLSV----IDENKVTIGASGAIPPLVTLLSE----GTQRGKKDAATALFNL 408 (564)
Q Consensus 341 ~i~~Lv~lL~~~----~~e~~~~a~~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~aL~nL 408 (564)
.+..+..+++++ .+.++..|.-++.+|.. ..+..........++.|...|.. ++..-+..++.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 356677777654 34566666666666642 11111111123456666666643 3455566778888887
Q ss_pred hcccChhHHHHHcCChHHHHHhcc-C--CCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcC--ChHHHHHH
Q 008465 409 CIYQGNKGKAVRAGVVPTLMHLLT-E--PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG--SPRNRENA 483 (564)
Q Consensus 409 ~~~~~~~~~i~~~g~i~~Lv~lL~-~--~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~k~~A 483 (564)
... ..++.+..++. + ....++..|+.+|..++.... ..+-+.|+.+..+. ++++|..|
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p-------~~v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP-------RKVQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc-------hHHHHHHHHHHcCCCCChHHHHHH
Confidence 543 23444555554 2 345688899999998864221 12455667776653 46777777
Q ss_pred HHHHH
Q 008465 484 AAVLV 488 (564)
Q Consensus 484 ~~~L~ 488 (564)
+.+|.
T Consensus 537 ~~~lm 541 (574)
T smart00638 537 VLVLM 541 (574)
T ss_pred HHHHH
Confidence 76654
No 350
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=73.68 E-value=1.2 Score=48.95 Aligned_cols=51 Identities=24% Similarity=0.612 Sum_probs=41.4
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHH--hCCCCCCCCCCCCcCC
Q 008465 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE--AGHRTCPKTQQTLTST 212 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~--~~~~~CP~~~~~l~~~ 212 (564)
..+..||||.....+|+.+.|.|.||+.|+-.-|. .+...||+|.......
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 35688999999999999999999999999887664 3456799998665533
No 351
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=73.48 E-value=4.4 Score=36.06 Aligned_cols=47 Identities=17% Similarity=0.366 Sum_probs=34.2
Q ss_pred CCccCcccccCCCCCEEcCCCC-----cccHHHHHHHHHh-CCCCCCCCCCCCc
Q 008465 163 DDFRCPISLELMKDPVIVSTGQ-----TYERSCIEKWLEA-GHRTCPKTQQTLT 210 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~~~cg~-----t~~r~ci~~~~~~-~~~~CP~~~~~l~ 210 (564)
.+-.|-||.+-.. +..-||.. ...++|+++|+.. +...||.|+.+..
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4568999987653 33446643 2479999999985 4678999988775
No 352
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.79 E-value=5.3 Score=40.99 Aligned_cols=34 Identities=18% Similarity=0.460 Sum_probs=27.1
Q ss_pred CCccCcccccCCC--CCE-EcCCCCcccHHHHHHHHH
Q 008465 163 DDFRCPISLELMK--DPV-IVSTGQTYERSCIEKWLE 196 (564)
Q Consensus 163 ~~f~Cpic~~lm~--dPv-~~~cg~t~~r~ci~~~~~ 196 (564)
.-|.|-||.+-.. +.. .++|+|.||+.|...++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 4588999987543 333 479999999999999986
No 353
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.65 E-value=1.8 Score=41.93 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCCcccHHHHHHHHH------------hCCCCCCCCCCCCcCCC
Q 008465 182 TGQTYERSCIEKWLE------------AGHRTCPKTQQTLTSTA 213 (564)
Q Consensus 182 cg~t~~r~ci~~~~~------------~~~~~CP~~~~~l~~~~ 213 (564)
|...+|++|+.+||. +|..+||.||+.+...+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 445689999999995 26789999999886443
No 354
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=72.39 E-value=46 Score=36.66 Aligned_cols=159 Identities=11% Similarity=0.068 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHhcccCCccchhhhc----cCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhc--CChH
Q 008465 311 PDSRTQEHAVTALLNLSICEDNKGSIVS----SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS--GAIP 384 (564)
Q Consensus 311 ~~~~i~~~A~~~L~nLs~~~~~~~~i~~----~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~ 384 (564)
-..+.+.-|+-+|.-+..+...-..+.. ...+..++..+. +.+..+-.++++|.|+..+..++..+... ..+.
T Consensus 556 wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~ 634 (745)
T KOG0301|consen 556 WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILD 634 (745)
T ss_pred CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Confidence 3555666677777666555443333321 223444444443 45667788999999998887666655443 2222
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhcc--cChhHHHHHcCChHHHHHhccC-----CCcchHHHHHHHHHHhcCChhhHH
Q 008465 385 PLVTLLSEGTQRGKKDAATALFNLCIY--QGNKGKAVRAGVVPTLMHLLTE-----PGGGMVDEALAILAILSSHPEGKA 457 (564)
Q Consensus 385 ~Lv~lL~~~~~~~~~~a~~aL~nL~~~--~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~al~~L~~L~~~~~~~~ 457 (564)
.++..=...+..++...++...|++.. ..+- +.|..+.|...+.. ++.+..-..+-+|++|+..+....
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~ 710 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI 710 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH
Confidence 222221112344444444444455431 1111 13444444444322 233445667888899999988888
Q ss_pred HHHhcCChHHHHHHHhc
Q 008465 458 AIGAAEAVPVLVEVIGN 474 (564)
Q Consensus 458 ~i~~~g~i~~Lv~lL~~ 474 (564)
.+...-.+..++.-+++
T Consensus 711 ~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 711 QLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHhcCHHHHHHHHHH
Confidence 88777678888888865
No 355
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=72.33 E-value=2.4 Score=43.40 Aligned_cols=32 Identities=19% Similarity=0.561 Sum_probs=24.5
Q ss_pred CCCcccHHHHHHHHHh------------CCCCCCCCCCCCcCCC
Q 008465 182 TGQTYERSCIEKWLEA------------GHRTCPKTQQTLTSTA 213 (564)
Q Consensus 182 cg~t~~r~ci~~~~~~------------~~~~CP~~~~~l~~~~ 213 (564)
|-...|.+|+-+||.. |..+||.||.++.-.+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 3445688999999963 5678999999987544
No 356
>PHA02862 5L protein; Provisional
Probab=71.98 E-value=3.3 Score=36.09 Aligned_cols=56 Identities=13% Similarity=0.317 Sum_probs=36.9
Q ss_pred cCcccccCCCCCEEcCCCC-----cccHHHHHHHHHh-CCCCCCCCCCCCcCCCCCchHHHHHHHHHHH
Q 008465 166 RCPISLELMKDPVIVSTGQ-----TYERSCIEKWLEA-GHRTCPKTQQTLTSTAVTPNYVLRSLIAQWC 228 (564)
Q Consensus 166 ~Cpic~~lm~dPv~~~cg~-----t~~r~ci~~~~~~-~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~ 228 (564)
.|-||.+--.+. .-||.. -..++|+++|++. ++..||.|+.+...... .+...+|.
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~------yKpf~kW~ 65 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKT------YVSFKKWN 65 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc------cccHHHhh
Confidence 577887765444 345543 3678999999984 56789999998753322 22456775
No 357
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=71.87 E-value=14 Score=34.04 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=34.0
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCC-chHHHHHHHHHHHHHcC
Q 008465 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVT-PNYVLRSLIAQWCEANG 232 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~-~n~~l~~~i~~~~~~~~ 232 (564)
+..|.||-|..-+. |.- .+. .++.||.|+..+...+-. .-..++..|...-..-+
T Consensus 115 ~~~Y~Cp~C~~ryt----------f~e-----A~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 115 NMFFFCPNCHIRFT----------FDE-----AME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCEEECCCCCcEEe----------HHH-----Hhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 46799998874332 221 222 579999999999754422 23455666666655544
No 358
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=71.82 E-value=17 Score=29.45 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=55.3
Q ss_pred hHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH
Q 008465 424 VPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ 496 (564)
Q Consensus 424 i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~ 496 (564)
+...+..|.++.+.++..++..|..|..... ...+-..+++..+...|++.++-+-.+|+..|..|+...+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3455667788888999999999999987666 11111235677788888888899999999999999987764
No 359
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=71.70 E-value=10 Score=36.94 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhhcCCCCCCHHHHHHHH--HhcCCCCH----HHHHHHHHHHHH
Q 008465 26 SDEVKEQVELVLSQFRRAKGRVDAPDVELYEELLSLYNKNNDVTPDPAVLRGLA--EKLQLMGI----ADLTQESLALHE 99 (564)
Q Consensus 26 ~~~~~e~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~----~~~~~E~~~l~~ 99 (564)
+.++.-++..+|+++.++-.+..+.++-+..++..+.++.+........++... ...|.++. .+.-.|++.+|.
T Consensus 243 ~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~Kq 322 (384)
T KOG0972|consen 243 VGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQ 322 (384)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 556778899999999999999999999999999998887444334444444433 34566555 445667788888
Q ss_pred HHHhcCCC--ChhhHHHHHHHHHHhhHh
Q 008465 100 MVASTGGD--PGETIEKMSMLLKKIKDF 125 (564)
Q Consensus 100 ~~~~~~~~--~~~~~~~~~~ll~~~~~~ 125 (564)
+++++|.. ....+-+|-.-+.|+++-
T Consensus 323 emEe~G~~msDGaplvkIkqavsKLk~e 350 (384)
T KOG0972|consen 323 EMEEQGAKMSDGAPLVKIKQAVSKLKEE 350 (384)
T ss_pred HHHHhcccccCCchHHHHHHHHHHHHHH
Confidence 88887732 233566666666677554
No 360
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=70.33 E-value=5 Score=34.75 Aligned_cols=44 Identities=18% Similarity=0.512 Sum_probs=32.3
Q ss_pred CccCcccccCCCC--CEE-cCCCC------cccHHHHHHHHHhCCCCCCCCCCC
Q 008465 164 DFRCPISLELMKD--PVI-VSTGQ------TYERSCIEKWLEAGHRTCPKTQQT 208 (564)
Q Consensus 164 ~f~Cpic~~lm~d--Pv~-~~cg~------t~~r~ci~~~~~~~~~~CP~~~~~ 208 (564)
...|.||.+...+ =|+ ++||. .||..|+.+|-+ .....|.-|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~-~~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR-ERNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh-hccCCCcccce
Confidence 5789999987766 555 67874 599999999964 45556765443
No 361
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=70.20 E-value=1.1e+02 Score=29.58 Aligned_cols=129 Identities=19% Similarity=0.131 Sum_probs=80.3
Q ss_pred ccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHH
Q 008465 267 TSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIV 346 (564)
Q Consensus 267 ~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv 346 (564)
+..+++.+...++.|..++..+..+.. -++..|..+...++...+..+...+..+-...+ +.. +.+..++
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f----~~L~~~L 80 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF----PFLQPLL 80 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH----HHHHHHH
Confidence 346788999999999999975512111 234566666666666665666666666643221 111 3344444
Q ss_pred HHH--h------cC--CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhh
Q 008465 347 HVL--R------IG--SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL-SEGTQRGKKDAATALFNLC 409 (564)
Q Consensus 347 ~lL--~------~~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~ 409 (564)
..+ + .+ ..+.....+..+..++...++ .-...++.+...+ ++.++..+..++.+|..|+
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 431 1 11 344555556777777766554 2234677888888 6778888999999999998
No 362
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=70.19 E-value=4.2 Score=29.26 Aligned_cols=29 Identities=31% Similarity=0.759 Sum_probs=23.4
Q ss_pred CccCcccccCC--CCCEEc--CCCCcccHHHHH
Q 008465 164 DFRCPISLELM--KDPVIV--STGQTYERSCIE 192 (564)
Q Consensus 164 ~f~Cpic~~lm--~dPv~~--~cg~t~~r~ci~ 192 (564)
.-.|++|.+.+ .|.+++ .||-.|-|.|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 35799999999 566654 699999999954
No 363
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.07 E-value=2.2e+02 Score=33.52 Aligned_cols=79 Identities=28% Similarity=0.268 Sum_probs=62.1
Q ss_pred hhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHHh---cCChHHHHHHHHHHHH
Q 008465 414 NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIG---NGSPRNRENAAAVLVH 489 (564)
Q Consensus 414 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~---~~~~~~k~~A~~~L~~ 489 (564)
.+.++..+|++..|+..+-...+.++-.-+..|..++.. |.+.......|++..|++++. +++...-.+|..++.-
T Consensus 900 dk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 900 DKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred hHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 466788999999999998877888898999999988864 566666666799999999875 4555566677777777
Q ss_pred Hhc
Q 008465 490 LCA 492 (564)
Q Consensus 490 L~~ 492 (564)
||.
T Consensus 980 Lga 982 (2799)
T KOG1788|consen 980 LGA 982 (2799)
T ss_pred Hhh
Confidence 765
No 364
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=69.89 E-value=15 Score=32.25 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=60.4
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhCCC-CHH---HHHHHHHHHHhccc
Q 008465 254 AERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLSTP-DSR---TQEHAVTALLNLSI 328 (564)
Q Consensus 254 ~~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~-~~~---i~~~A~~~L~nLs~ 328 (564)
.....+..|.+.|.++++.+|..|+..|..+.+.. +..+..+....++..|..++.+. ... +++.++..|...+.
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999865 45666777778899999988753 333 78888888877753
No 365
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=69.71 E-value=11 Score=34.29 Aligned_cols=109 Identities=17% Similarity=0.090 Sum_probs=69.1
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhcc--CChHHHHHHHhcC-CHHHHHHHHHHHHhccCC----cc
Q 008465 300 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS--GAVPSIVHVLRIG-SMEARENAAATLFSLSVI----DE 372 (564)
Q Consensus 300 ~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~--g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~----~~ 372 (564)
.+..+..+|+++++.-+-.++..+.-.+.... .+.+.+. -.+..++.+|++. ...+.+.++.+|..|... ++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44567788888888888877776666654322 3444333 3677788888876 566777777777766533 33
Q ss_pred hhhHhhhc---CChHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 008465 373 NKVTIGAS---GAIPPLVTLLSEGTQRGKKDAATALFNLCIY 411 (564)
Q Consensus 373 ~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 411 (564)
...++... ++++.++.++.. ......++.+|..+...
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 33344332 566666666654 45566777777776553
No 366
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=69.43 E-value=25 Score=38.87 Aligned_cols=185 Identities=15% Similarity=0.150 Sum_probs=111.2
Q ss_pred HhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCc-cchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhh
Q 008465 297 EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED-NKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKV 375 (564)
Q Consensus 297 ~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~ 375 (564)
..+++|.|+++++..|..+|..- |-++-...+ -...+++.-+++.+..-+.+.++.+|+.++..+..|+.--..+
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~L---L~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLL---LQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHH---HHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 34689999999999998888533 333322222 2456677888999999999999999999999888886432211
Q ss_pred HhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcC-ChHHHHHhccCCCcchHHHHHHHHHHhcCChh
Q 008465 376 TIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAG-VVPTLMHLLTEPGGGMVDEALAILAILSSHPE 454 (564)
Q Consensus 376 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g-~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~ 454 (564)
......+..+.++-.+....++.+..-+|..++.+.... +..+ .+.+...-+.++-...+..++..|+......+
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~ 479 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD 479 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcccccc
Confidence 111122333333333334556666666666665542211 1222 22333444555555566777777776555443
Q ss_pred hHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 008465 455 GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 455 ~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~ 491 (564)
.... ...++|.++.+.-+.+..++..|-.++...-
T Consensus 480 ~~~v--a~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 480 QSEV--ANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred hhhh--hhhccccccccccCcccchhhHHHHHHHHHH
Confidence 3322 2246777777777777777777776665443
No 367
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=69.38 E-value=1.7e+02 Score=31.53 Aligned_cols=108 Identities=13% Similarity=0.073 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHH----hhCCC-CHHHHHHHHHHHHhcccCCccchhhhccCChHHH
Q 008465 271 PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVG----LLSTP-DSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSI 345 (564)
Q Consensus 271 ~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~----lL~~~-~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~L 345 (564)
...+.+|++.|......-+- ..|+.+.. ++..+ ..++|..++..|..+......+..+... .+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~--------~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~----~f 71 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL--------SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRA----EF 71 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc--------hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHH----HH
Confidence 34566666666655432211 33444443 33333 5678888888888887654433222221 12
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhc
Q 008465 346 VHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS 391 (564)
Q Consensus 346 v~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~ 391 (564)
...+... .++--..-..+|..|+.+...-. ..+.+..+.|...|.
T Consensus 72 F~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~-~~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 72 FRDISDPSNDDDFDLRLEALIALTDNGRDID-FFEYEIGPFLLSWLE 117 (464)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHcCCcCch-hcccchHHHHHHHHH
Confidence 2333332 34444455566777765544332 235566777766664
No 368
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=68.25 E-value=19 Score=32.99 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=33.1
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCC-chHHHHHHHHHHHHH
Q 008465 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVT-PNYVLRSLIAQWCEA 230 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~-~n~~l~~~i~~~~~~ 230 (564)
+..|.||.|..-+. |... +. -.++||.|+..+...+.. ....+.+.+....+.
T Consensus 111 ~~~y~C~~~~~r~s----------fdeA-----~~-~~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~ 164 (176)
T COG1675 111 NNYYVCPNCHVKYS----------FDEA-----ME-LGFTCPKCGEDLEEYDSSEEIEELESELDELEEE 164 (176)
T ss_pred CCceeCCCCCCccc----------HHHH-----HH-hCCCCCCCCchhhhccchHHHHHHHHHHHHHHHH
Confidence 46799998875443 3333 33 358999999998755433 344555555555443
No 369
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=68.10 E-value=2.8 Score=39.93 Aligned_cols=48 Identities=13% Similarity=0.440 Sum_probs=32.2
Q ss_pred CcccccCC-CCCEE-cCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCch
Q 008465 167 CPISLELM-KDPVI-VSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 217 (564)
Q Consensus 167 Cpic~~lm-~dPv~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 217 (564)
|-.|..-- .+|.. ++|+|.||..|...- ....||.|++++....+.+|
T Consensus 6 Cn~C~~~~~~~~f~LTaC~HvfC~~C~k~~---~~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 6 CNKCFRFPSQDPFFLTACRHVFCEPCLKAS---SPDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred eccccccCCCCceeeeechhhhhhhhcccC---Cccccccccceeeeeecccc
Confidence 44444322 57765 589999999996542 12389999999765555554
No 370
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=67.79 E-value=19 Score=30.96 Aligned_cols=71 Identities=14% Similarity=0.323 Sum_probs=51.1
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH-HHHHHHH-cCCHHHHHHhhh-----cC---CHHHHHHHHHHHHHHH
Q 008465 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ-YLAEAKE-LGVMGPLVDLAQ-----NG---TDRGKRKAAQLLERMS 533 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~-~~~~~~~-~g~i~~L~~Ll~-----~~---~~~~k~~A~~lL~~l~ 533 (564)
++..|.+-|.+.++.+|..|+.+|..+|..++. ++..+.. ..+|..+.+.-. .| ...+|..|.+++..|.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 456777777888899999999999999987664 4444443 345666666654 22 3568899999998876
Q ss_pred h
Q 008465 534 R 534 (564)
Q Consensus 534 ~ 534 (564)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 4
No 371
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=67.29 E-value=18 Score=32.93 Aligned_cols=107 Identities=20% Similarity=0.124 Sum_probs=67.2
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhc--CChHHHHHhhccC-CHHHHHHHHHHHHHhhcccChhHH
Q 008465 341 AVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS--GAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQGNKGK 417 (564)
Q Consensus 341 ~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~~~~~ 417 (564)
.+..+..+|++.+++.|-.++..+..++.... .+.+.+. ..+..|+.+|+.. +..+++.++.+|..|...-.++..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35567788888888888877777777765432 2333232 5778888888775 467788888888887765444443
Q ss_pred HHH-------cCChHHHHHhccCCCcchHHHHHHHHHHhc
Q 008465 418 AVR-------AGVVPTLMHLLTEPGGGMVDEALAILAILS 450 (564)
Q Consensus 418 i~~-------~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~ 450 (564)
+.+ .++++.+++++.. ....+.++.+|..+-
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 332 2344555555543 455666666666553
No 372
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=66.76 E-value=84 Score=34.31 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=67.4
Q ss_pred cCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHH
Q 008465 339 SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKA 418 (564)
Q Consensus 339 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i 418 (564)
.|.+..++..+.+.+..+|..++.+|.-++..-.-.......|.+..|.+.+-+..+.++..|+.+|+.+-....|....
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 45666677777788889999999999888754333334444577778888887888899999999999876444333221
Q ss_pred HHcCChHHHHHhccC-CCcchHHHHH
Q 008465 419 VRAGVVPTLMHLLTE-PGGGMVDEAL 443 (564)
Q Consensus 419 ~~~g~i~~Lv~lL~~-~~~~~~~~al 443 (564)
+ +..|+.++++ ++.+++..|+
T Consensus 170 ~----~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 170 I----VNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred H----HHHHHHHHhcCcHHHHHHHHH
Confidence 1 2244555543 5566665554
No 373
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=66.61 E-value=33 Score=29.91 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=56.9
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHhhhcC-C-HHHHHHHHHHHHHHHhhH
Q 008465 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGD-QQYLAEAKELGVMGPLVDLAQNG-T-DRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~Ll~~~-~-~~~k~~A~~lL~~l~~~~ 536 (564)
++..|-.-|.++++.++..|+.+|-.+..+. ......+...+++..|..++... + +.+++++..++..-....
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4566777788899999999999988887764 45667777888999999998765 3 338888888887766544
No 374
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=66.44 E-value=28 Score=30.64 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=58.1
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhc------CCHHHHHHHHHHHHHHHhhH
Q 008465 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQN------GTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~Ll~~------~~~~~k~~A~~lL~~l~~~~ 536 (564)
++..|..-|.++++.++..|+.+|-.+..+.+ .....+...+++..|+.++.. .+..++.+...++..-....
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 56677788888999999999999888876554 566777788899999999963 46789999888887776544
No 375
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=66.31 E-value=62 Score=39.20 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=76.9
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCC-cchhhHh
Q 008465 299 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKVTI 377 (564)
Q Consensus 299 g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~i 377 (564)
+.+..++..|..+...+|-.|+.+|.++..-+. ..+....+-..+..-+...+..+|+.|+..++..... ++...+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q- 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ- 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH-
Confidence 456778888888889999999999999865332 1222333344455556667788999999998755432 222222
Q ss_pred hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHH
Q 008465 378 GASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 417 (564)
Q Consensus 378 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 417 (564)
+...+.+-+.+....+++.++..|..+|...++-..
T Consensus 893 ----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~ 928 (1692)
T KOG1020|consen 893 ----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK 928 (1692)
T ss_pred ----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh
Confidence 234555666666788999999999999987766543
No 376
>PRK12495 hypothetical protein; Provisional
Probab=65.45 E-value=6.9 Score=36.77 Aligned_cols=33 Identities=30% Similarity=0.246 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHh
Q 008465 89 DLTQESLALHEMVASTGGDPGETIEKMSMLLKKI 122 (564)
Q Consensus 89 ~~~~E~~~l~~~~~~~~~~~~~~~~~~~~ll~~~ 122 (564)
+-..|.+.|++..+.-. +.-+..+.|..||.+.
T Consensus 5 DkEaEREkLREKye~d~-~~R~~~~~ma~lL~~g 37 (226)
T PRK12495 5 DKEAEREKLREKYEQDE-QKREATERMSELLLQG 37 (226)
T ss_pred hHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHhh
Confidence 44566777766554311 1123567788887766
No 377
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=64.44 E-value=51 Score=32.83 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=49.0
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhH--HHHHcCChHHH----HHhcc--------CCCcchHHHHHHHH
Q 008465 381 GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG--KAVRAGVVPTL----MHLLT--------EPGGGMVDEALAIL 446 (564)
Q Consensus 381 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~--~i~~~g~i~~L----v~lL~--------~~~~~~~~~al~~L 446 (564)
-++|+++.++++.++.+|..++.+|..+........ .+.+.|..+.+ ..+|. ..+..+...+..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 468999999999999999999999999987655443 24466655543 33333 23345667777777
Q ss_pred HHhc
Q 008465 447 AILS 450 (564)
Q Consensus 447 ~~L~ 450 (564)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7663
No 378
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=64.32 E-value=4.6 Score=28.24 Aligned_cols=39 Identities=36% Similarity=0.796 Sum_probs=21.7
Q ss_pred CcccccCCC--CCEEcCCCC-----cccHHHHHHHHH-hCCCCCCCC
Q 008465 167 CPISLELMK--DPVIVSTGQ-----TYERSCIEKWLE-AGHRTCPKT 205 (564)
Q Consensus 167 Cpic~~lm~--dPv~~~cg~-----t~~r~ci~~~~~-~~~~~CP~~ 205 (564)
|-||++--. +|.+.||+. -.-+.|+.+|+. .++..|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 445554332 256667652 356889999998 456778876
No 379
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=62.84 E-value=8.5 Score=26.32 Aligned_cols=39 Identities=15% Similarity=0.437 Sum_probs=20.1
Q ss_pred CcccccCCCCCEEc---CCCCcccHHHHHHHHHhCC-CCCCCC
Q 008465 167 CPISLELMKDPVIV---STGQTYERSCIEKWLEAGH-RTCPKT 205 (564)
Q Consensus 167 Cpic~~lm~dPv~~---~cg~t~~r~ci~~~~~~~~-~~CP~~ 205 (564)
|-+|.++...=+.- .|+-.+-..|+..+|.... ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 45666665544442 3777788999999998433 369986
No 380
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=62.29 E-value=52 Score=27.07 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHH-HhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHh
Q 008465 272 EDQRSAAGEIRLLAKRNADNRVAIA-EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLR 350 (564)
Q Consensus 272 ~~~~~al~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~ 350 (564)
+++..|+..|..=-.++--....+. ..+.+..|+.-...++...++.++..|..+..++.....+.+-|+...+-++=.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 4566666554431111221122222 335556666666777777888999999999999888888889999988666554
Q ss_pred cCCHHHHHHHHHHH
Q 008465 351 IGSMEARENAAATL 364 (564)
Q Consensus 351 ~~~~e~~~~a~~~L 364 (564)
.-++..+...-.++
T Consensus 82 ~~~~~~~~~id~il 95 (98)
T PF14726_consen 82 NVEPNLQAEIDEIL 95 (98)
T ss_pred cCCHHHHHHHHHHH
Confidence 44666555444444
No 381
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.08 E-value=10 Score=28.68 Aligned_cols=39 Identities=28% Similarity=0.502 Sum_probs=29.0
Q ss_pred EcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHH
Q 008465 179 IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVL 220 (564)
Q Consensus 179 ~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l 220 (564)
+-.-.+|||..|.+..+ +..||.|+-.+......|-..+
T Consensus 24 ICtfEcTFCadCae~~l---~g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 24 ICTFECTFCADCAENRL---HGLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred EEEEeeehhHhHHHHhh---cCcCCCCCchhhcCcCChHHHH
Confidence 33346899999998765 4579999999987777774333
No 382
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=60.54 E-value=77 Score=38.47 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=69.1
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhH--HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhc-CChhhHH
Q 008465 381 GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG--KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILS-SHPEGKA 457 (564)
Q Consensus 381 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~--~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~~~~~ 457 (564)
+++..++..+......++..|+.+|.++..-++..- ..++.| +-.-+.+.+..|++.|+..++... .+++...
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~----Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEA----VHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHH----HHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 456667777777778889999999998887655421 122222 333455567788999999888443 3333222
Q ss_pred HHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 008465 458 AIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 495 (564)
Q Consensus 458 ~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~ 495 (564)
.. -..+.+-+.+.+..+|..+..+|.-+|...|
T Consensus 892 qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 892 QY-----YDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 22 1233333445567889999999999998776
No 383
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=59.86 E-value=16 Score=32.95 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=23.6
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 008465 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTA 213 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 213 (564)
+..|.||-|..-+. |. ..+. .+++||.|+.++...+
T Consensus 107 ~~~Y~Cp~c~~r~t----------f~-----eA~~-~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 107 NMFFICPNMCVRFT----------FN-----EAME-LNFTCPRCGAMLDYLD 142 (158)
T ss_pred CCeEECCCCCcEee----------HH-----HHHH-cCCcCCCCCCEeeecc
Confidence 46799998873222 21 2222 4799999999986444
No 384
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=59.46 E-value=3.9 Score=29.46 Aligned_cols=38 Identities=18% Similarity=0.461 Sum_probs=21.9
Q ss_pred CCccCcccccCCCCCEEcCCCCcccHHHHHHHHHh-CCCCCCCCCC
Q 008465 163 DDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA-GHRTCPKTQQ 207 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~-~~~~CP~~~~ 207 (564)
+.|.||.|.+-+... .+..-+....... ....||.|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 469999999843321 2333333333332 3467999975
No 385
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=59.36 E-value=1e+02 Score=28.46 Aligned_cols=138 Identities=20% Similarity=0.157 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcccCCccc------hhhh------ccCChHHHH-HHHhcCCHHHHHHHHHHHHhccCCcchhhHhhh--
Q 008465 315 TQEHAVTALLNLSICEDNK------GSIV------SSGAVPSIV-HVLRIGSMEARENAAATLFSLSVIDENKVTIGA-- 379 (564)
Q Consensus 315 i~~~A~~~L~nLs~~~~~~------~~i~------~~g~i~~Lv-~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~-- 379 (564)
+|..|+.+|..++...+.| ..+. ....-+.|+ -++.++++.+|..|+.+|..|-.....--..++
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 5666777776666542222 1222 122333444 455667899999999999888654321111111
Q ss_pred ---c---------------CChHHHHHhhccC-CHHHHHHHHHHHHHhhcccChhH---HHHHcCChHHHHHhccCCCcc
Q 008465 380 ---S---------------GAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQGNKG---KAVRAGVVPTLMHLLTEPGGG 437 (564)
Q Consensus 380 ---~---------------g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~~~~---~i~~~g~i~~Lv~lL~~~~~~ 437 (564)
. ..-..|+..|..+ +..+....+++|..|....+... .++ ..++..+-.++.+.+.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll-~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLL-TEVVTQVRPLLRHRDPN 160 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHH-HHHHHHHHHHHhcCCCc
Confidence 1 2223344445444 56777888889988887654321 111 13445555667778899
Q ss_pred hHHHHHHHHHHhcCCh
Q 008465 438 MVDEALAILAILSSHP 453 (564)
Q Consensus 438 ~~~~al~~L~~L~~~~ 453 (564)
++..++.+++.|....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999876543
No 386
>PLN02189 cellulose synthase
Probab=59.32 E-value=6.8 Score=45.39 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=36.1
Q ss_pred CccCcccccCC-----CCCEEc--CCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 164 DFRCPISLELM-----KDPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm-----~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+....
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34899999853 245543 478889999998777789999999987654
No 387
>PHA03096 p28-like protein; Provisional
Probab=59.22 E-value=5.8 Score=39.41 Aligned_cols=43 Identities=26% Similarity=0.543 Sum_probs=29.7
Q ss_pred ccCcccccCCC-CCE------Ec-CCCCcccHHHHHHHHHhC--CCCCCCCCC
Q 008465 165 FRCPISLELMK-DPV------IV-STGQTYERSCIEKWLEAG--HRTCPKTQQ 207 (564)
Q Consensus 165 f~Cpic~~lm~-dPv------~~-~cg~t~~r~ci~~~~~~~--~~~CP~~~~ 207 (564)
-.|.||++... .|+ ++ .|.|.||-.||..|.... ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 56999987442 222 23 699999999999999743 345666644
No 388
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.14 E-value=23 Score=40.20 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=89.9
Q ss_pred hhhhccCChHHHHHHHhcC--------CHHHHHHHHHHHHhccCCcchhhHhhhc--------CChHHHHHhhcc----C
Q 008465 334 GSIVSSGAVPSIVHVLRIG--------SMEARENAAATLFSLSVIDENKVTIGAS--------GAIPPLVTLLSE----G 393 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~--------~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--------g~i~~Lv~lL~~----~ 393 (564)
+.+.+.+++..++++.... ..++...|..+|..+...+..+..++.. .+|..++..... .
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~ 674 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIV 674 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccccc
Confidence 4455667777777777543 2467788888888888888777766543 245544444321 2
Q ss_pred CHHHHHHHHHHHHHhhccc-ChhH----------------------------------HHH-HcCChHHHHHhccCCC--
Q 008465 394 TQRGKKDAATALFNLCIYQ-GNKG----------------------------------KAV-RAGVVPTLMHLLTEPG-- 435 (564)
Q Consensus 394 ~~~~~~~a~~aL~nL~~~~-~~~~----------------------------------~i~-~~g~i~~Lv~lL~~~~-- 435 (564)
++++++.|+.+|.|....+ +++. ..+ ...+|..|+++|....
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 7899999999999986543 1111 112 3568999999997643
Q ss_pred ---cchHHHHHHHHHHhcCChhhHHHHHhcC
Q 008465 436 ---GGMVDEALAILAILSSHPEGKAAIGAAE 463 (564)
Q Consensus 436 ---~~~~~~al~~L~~L~~~~~~~~~i~~~g 463 (564)
..++..|+.+|.-|+.++..|+.+.+.-
T Consensus 755 t~aD~IRalAc~~L~GLaR~~tVrQIltKLp 785 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLARDDTVRQILTKLP 785 (1516)
T ss_pred CcHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence 3578889999999999999988876543
No 389
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=58.83 E-value=34 Score=30.02 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=56.3
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhcC-CHH---HHHHHHHHHHHHHhhH
Q 008465 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQNG-TDR---GKRKAAQLLERMSRFI 536 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~Ll~~~-~~~---~k~~A~~lL~~l~~~~ 536 (564)
++..|-.-|.++++.++..|+.+|-.+..+.+ .....+....++..|..++.+. ... +++++..+|.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 45667777888999999999999988887764 5566666777999999988765 333 7888888887766543
No 390
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=58.67 E-value=98 Score=28.63 Aligned_cols=73 Identities=18% Similarity=0.093 Sum_probs=54.9
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHhhcc-cChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCCh
Q 008465 381 GAIPPLVTLLSEGTQRGKKDAATALFNLCIY-QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP 453 (564)
Q Consensus 381 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~ 453 (564)
-.+|.+++=|.+.+...+-.|...+..|... ...+..-+=...|.+|-..|...++++...++.+|..|+...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 4566666667776777777788888777766 444444445678888888998899999999999999995443
No 391
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=58.53 E-value=1.6e+02 Score=33.33 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=74.2
Q ss_pred cCChHHHHHhhcc--------CCHHHHHHHHHHHHHhhc--c-cChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHH
Q 008465 380 SGAIPPLVTLLSE--------GTQRGKKDAATALFNLCI--Y-QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAI 448 (564)
Q Consensus 380 ~g~i~~Lv~lL~~--------~~~~~~~~a~~aL~nL~~--~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~ 448 (564)
.|+++.+.+.+.. .+..-.+-|++.+.++.. . +.....+.+.=+++.+++.+++...-++..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 4788888888832 134445667777777665 2 2233345566678888899998888999999999998
Q ss_pred hcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 008465 449 LSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 449 L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~ 494 (564)
+...-..... -..+.......|.+.+-.++..|+-+|.-+-.++
T Consensus 487 ~eeDfkd~~i--ll~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 487 IEEDFKDNGI--LLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHhcccchH--HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 8432111111 1123455566677777777888888887776654
No 392
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=57.28 E-value=6.6 Score=36.50 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=35.9
Q ss_pred CccCcccccCCCCCEE-cCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 164 DFRCPISLELMKDPVI-VSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
-..|.+|+.+...-+. -+||-.|-+.|++.++.+ ...||.|+.-.+
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~ 227 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWT 227 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccC
Confidence 3579999998765443 367777899999999986 778999976554
No 393
>PLN02436 cellulose synthase A
Probab=56.93 E-value=8 Score=44.90 Aligned_cols=47 Identities=19% Similarity=0.423 Sum_probs=36.1
Q ss_pred CccCcccccCC-----CCCEEc--CCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 164 DFRCPISLELM-----KDPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm-----~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34899999743 245543 478889999997767789999999987654
No 394
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=56.90 E-value=2.8e+02 Score=29.83 Aligned_cols=258 Identities=14% Similarity=0.137 Sum_probs=128.3
Q ss_pred HHHHHHHHcc--CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCCccchh
Q 008465 259 IEILLCKLTS--GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGS 335 (564)
Q Consensus 259 i~~Lv~~L~s--~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~~~~~ 335 (564)
+-.+.+.|-. ...+.|..++.-|..+.+..... ..... ..+.+.+.. ..++--..-+.+|..|+.+..+- .
T Consensus 29 iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~-~~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~ 102 (464)
T PF11864_consen 29 IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSS-SGLMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-D 102 (464)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccc-cHHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-h
Confidence 4444444433 24567777777777777644321 11111 122333333 22222223344455555443333 2
Q ss_pred hhccCChHHHHHHHhcCCHHHHHHHHHHHHhccC---CcchhhHh---hhcCC----hHHHHHhhccC----CHHHHHHH
Q 008465 336 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSV---IDENKVTI---GASGA----IPPLVTLLSEG----TQRGKKDA 401 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~---~~~~~~~i---~~~g~----i~~Lv~lL~~~----~~~~~~~a 401 (564)
..+.+..+.+...|..-. .++..-...+. ....+..- .+.+. +..++.+++.. ++......
T Consensus 103 ~~~~~i~~~L~~wl~~~~-----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~l 177 (464)
T PF11864_consen 103 FFEYEIGPFLLSWLEPSY-----QAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSL 177 (464)
T ss_pred hcccchHHHHHHHHHHHH-----HHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 347778888888875421 11111111111 11111110 12233 33334444332 44555555
Q ss_pred HHHHHHhhcccChhH----------HHHHcCChH-----HHHHhccC--CCcchHHHHHHHHHHhcCChhhHHHHHhcCC
Q 008465 402 ATALFNLCIYQGNKG----------KAVRAGVVP-----TLMHLLTE--PGGGMVDEALAILAILSSHPEGKAAIGAAEA 464 (564)
Q Consensus 402 ~~aL~nL~~~~~~~~----------~i~~~g~i~-----~Lv~lL~~--~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~ 464 (564)
+..++.+|....+.. .++..|.|| .++..|.. ........+..++.||+...-+.. +
T Consensus 178 v~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~------~ 251 (464)
T PF11864_consen 178 VDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHS------A 251 (464)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHH------H
Confidence 555666654433222 233445443 35555543 334667778888888887654432 4
Q ss_pred hHHHHHHHhcC------ChHHHHHHHHHHHHHhcCCHHHHHHHHHc---CCHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 008465 465 VPVLVEVIGNG------SPRNRENAAAVLVHLCAGDQQYLAEAKEL---GVMGPLVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 465 i~~Lv~lL~~~------~~~~k~~A~~~L~~L~~~~~~~~~~~~~~---g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
+..|..+|.+. +..+-..|+.+|..+..+.++....-+.. -+++.|...++.+++.+--....++..+-
T Consensus 252 i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 252 IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 56777888432 24455678888877766553222222222 26788888888777776666666555554
No 395
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.84 E-value=4.4 Score=39.24 Aligned_cols=42 Identities=19% Similarity=0.468 Sum_probs=32.8
Q ss_pred CCccCcccccCCCCCEEcCC----CCcccHHHHHHHHHh----CCCCCCC
Q 008465 163 DDFRCPISLELMKDPVIVST----GQTYERSCIEKWLEA----GHRTCPK 204 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~~~c----g~t~~r~ci~~~~~~----~~~~CP~ 204 (564)
..++|.+|++-+.|-..+-| .|-||.-|-.+.++. |...||.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 34999999999999888766 589999998887763 4445664
No 396
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=56.48 E-value=12 Score=31.20 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchH
Q 008465 399 KDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMV 439 (564)
Q Consensus 399 ~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 439 (564)
...+..|..|+..++--..+++.|+++.|+.+|.+.+.++.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 45677888899999888889999999999999998877654
No 397
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=56.00 E-value=69 Score=31.91 Aligned_cols=71 Identities=18% Similarity=0.111 Sum_probs=47.3
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhh--HhhhcCChHHHHHhhc------------cCCHHHHHHHHHHH
Q 008465 340 GAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKV--TIGASGAIPPLVTLLS------------EGTQRGKKDAATAL 405 (564)
Q Consensus 340 g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~--~i~~~g~i~~Lv~lL~------------~~~~~~~~~a~~aL 405 (564)
=++|+++.++++.+++.+..++.+|..+...-.... .+...|..+.+-+.+. ..+..+...|..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 368999999999999999999999999876433222 2444565554444332 23445666777777
Q ss_pred HHhhc
Q 008465 406 FNLCI 410 (564)
Q Consensus 406 ~nL~~ 410 (564)
..|..
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 77643
No 398
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=55.56 E-value=7.7 Score=28.91 Aligned_cols=13 Identities=31% Similarity=0.997 Sum_probs=9.6
Q ss_pred cccHHHHHHHHHh
Q 008465 185 TYERSCIEKWLEA 197 (564)
Q Consensus 185 t~~r~ci~~~~~~ 197 (564)
.|||.|+.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 399
>PF14353 CpXC: CpXC protein
Probab=54.88 E-value=7.6 Score=33.61 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=29.4
Q ss_pred ccCcccccCCCCCEEcCCCCcccHHHHHHHHHhC---CCCCCCCCCCCc
Q 008465 165 FRCPISLELMKDPVIVSTGQTYERSCIEKWLEAG---HRTCPKTQQTLT 210 (564)
Q Consensus 165 f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~---~~~CP~~~~~l~ 210 (564)
..||-|+..+.-.+-..-.-.....-.++-++ | ..+||.|+..+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~-g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILD-GSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHc-CCcCEEECCCCCCcee
Confidence 57999999887665433233334555555554 4 358999998764
No 400
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=54.75 E-value=9.5 Score=44.43 Aligned_cols=46 Identities=20% Similarity=0.414 Sum_probs=35.6
Q ss_pred ccCcccccCC-----CCCEEc--CCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 165 FRCPISLELM-----KDPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 165 f~Cpic~~lm-----~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+....
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4899999743 256543 588889999997666789999999977654
No 401
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.75 E-value=13 Score=42.10 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=28.8
Q ss_pred CCCCCccCcccccCC-CCCEEc-CCCCcccHHHHHHHHH
Q 008465 160 VIPDDFRCPISLELM-KDPVIV-STGQTYERSCIEKWLE 196 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm-~dPv~~-~cg~t~~r~ci~~~~~ 196 (564)
.+...-.|-+|...+ ..|..+ +|||.|-+.|+.+...
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 344456899998744 567765 9999999999999775
No 402
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=53.51 E-value=1.5e+02 Score=33.53 Aligned_cols=101 Identities=19% Similarity=0.235 Sum_probs=67.9
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHh-cCChhhHHHH
Q 008465 381 GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAIL-SSHPEGKAAI 459 (564)
Q Consensus 381 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L-~~~~~~~~~i 459 (564)
.+|..|..+-+..=+.++..++.++++|..+.+.... .++..||+-|.+++..+...|-..|.+| +.+|.-+..+
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 5677777777776788999999999998776554433 3455688888888888888887777766 5666544333
Q ss_pred HhcCChHHHHHHHhcCC--hHHHHHHHHHHHHH
Q 008465 460 GAAEAVPVLVEVIGNGS--PRNRENAAAVLVHL 490 (564)
Q Consensus 460 ~~~g~i~~Lv~lL~~~~--~~~k~~A~~~L~~L 490 (564)
+..+..++..++ .+.+-+|+..|..+
T Consensus 380 -----i~EIer~~FRpn~~~ra~Yyav~fLnQ~ 407 (988)
T KOG2038|consen 380 -----IDEIERLAFRPNVSERAHYYAVIFLNQM 407 (988)
T ss_pred -----HHHHHHHHcccCccccceeehhhhhhhh
Confidence 334445554433 44555666666554
No 403
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=52.85 E-value=3.9e+02 Score=30.34 Aligned_cols=120 Identities=15% Similarity=0.075 Sum_probs=78.3
Q ss_pred hCCHHHHHHhhCC--------CCHHHHHHHHHHHHhccc--CCc-cchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHh
Q 008465 298 AGAIPLLVGLLST--------PDSRTQEHAVTALLNLSI--CED-NKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFS 366 (564)
Q Consensus 298 ~g~i~~Lv~lL~~--------~~~~i~~~A~~~L~nLs~--~~~-~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~ 366 (564)
+|+++.++..|.. +++.-.+-|++.+.++.. ... .-..+++.=.++.++-.+++...-++..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 5889999999932 123334566777776643 211 12334444456666667788888889999999988
Q ss_pred ccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHH
Q 008465 367 LSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV 419 (564)
Q Consensus 367 Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~ 419 (564)
++.+ .+..-.-..+.+.....+++.+..++..|+-||.-+..+......+-
T Consensus 487 ~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~s 537 (970)
T COG5656 487 IEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFS 537 (970)
T ss_pred HHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHH
Confidence 8533 33322334556667777788778889899999988887765544443
No 404
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=52.54 E-value=15 Score=40.86 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=30.9
Q ss_pred CCCCCCccCcccccCCCCCE----EcC---CCCcccHHHHHHHHHh
Q 008465 159 PVIPDDFRCPISLELMKDPV----IVS---TGQTYERSCIEKWLEA 197 (564)
Q Consensus 159 ~~~p~~f~Cpic~~lm~dPv----~~~---cg~t~~r~ci~~~~~~ 197 (564)
...++.-.|++|..-+.+|| +.+ |++.+|..||+.|.+.
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~Dq 136 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQ 136 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHH
Confidence 34566788999998888866 234 8999999999999973
No 405
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=52.43 E-value=55 Score=30.37 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=53.8
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHH
Q 008465 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQ 538 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~ 538 (564)
.++.++++..+.+..++..|+.+|..+-..+-.+- .-.+|.|+.|..++++.++..|..+++.+.+..+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 45677777777888999999988877765431111 12588999999999999999999999999876654
No 406
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.14 E-value=10 Score=39.57 Aligned_cols=66 Identities=20% Similarity=0.385 Sum_probs=39.2
Q ss_pred CccCcccc-cCCCC---CEEcCCCCcccHHHHHHHHHh-----CCCCCCC--CCCCCcCCC---CCchHHHHHHHHHHHH
Q 008465 164 DFRCPISL-ELMKD---PVIVSTGQTYERSCIEKWLEA-----GHRTCPK--TQQTLTSTA---VTPNYVLRSLIAQWCE 229 (564)
Q Consensus 164 ~f~Cpic~-~lm~d---Pv~~~cg~t~~r~ci~~~~~~-----~~~~CP~--~~~~l~~~~---l~~n~~l~~~i~~~~~ 229 (564)
...|+||. +.+.. -.+..|+|-||..|+.+++.. ....||. |...++... +.++ .++.+++....
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~~ 224 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRLK 224 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHHH
Confidence 57899998 44322 114579999999999999872 2346764 444444322 2222 45555544443
Q ss_pred H
Q 008465 230 A 230 (564)
Q Consensus 230 ~ 230 (564)
+
T Consensus 225 e 225 (384)
T KOG1812|consen 225 E 225 (384)
T ss_pred H
Confidence 3
No 407
>PLN02195 cellulose synthase A
Probab=52.06 E-value=11 Score=43.38 Aligned_cols=45 Identities=13% Similarity=0.344 Sum_probs=35.2
Q ss_pred cCcccccCC-----CCCEEc--CCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 166 RCPISLELM-----KDPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 166 ~Cpic~~lm-----~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+....
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 689998733 366653 688889999997666789999999987655
No 408
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.04 E-value=2.6e+02 Score=31.42 Aligned_cols=144 Identities=15% Similarity=0.186 Sum_probs=90.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCC--cc-hhhHhhh--cCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHH
Q 008465 343 PSIVHVLRIGSMEARENAAATLFSLSVI--DE-NKVTIGA--SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 417 (564)
Q Consensus 343 ~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~--~~-~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 417 (564)
|.|..-|+-.+.++|.+|+..++++--- ++ .+..+-. ..-+..|.++|.++-+.++..|..-++.+.+. -..
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---fWe 253 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSK---FWE 253 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---HHH
Confidence 3455666777889999999999988533 22 1222221 14567889999999888888776666554321 122
Q ss_pred HHHcCChHHHHHh----cc-CCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 008465 418 AVRAGVVPTLMHL----LT-EPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 418 i~~~g~i~~Lv~l----L~-~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~ 491 (564)
++=..++..|+.. +. +...+++-.....|-.+..+|..-..+- -++|.|-..|.+.+.++|-.++.+|..|-
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 2222222223322 21 2345677777777888888775544332 25666767778888999999998887764
No 409
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=51.88 E-value=1e+02 Score=25.73 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhC------CCCHHHHHHHHHHHHhc
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLS------TPDSRTQEHAVTALLNL 326 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~------~~~~~i~~~A~~~L~nL 326 (564)
...+..|.+.|.+.++..+..|+..|..+.+.. +.....+....++..++++.. ..+..++..+...+...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 468899999999999999999999999998754 455556666666666655311 13677888877666543
No 410
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=51.10 E-value=78 Score=27.61 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCCH---HHHHHHHHHHHHHHHh
Q 008465 74 VLRGLAEKLQLMGI---ADLTQESLALHEMVAS 103 (564)
Q Consensus 74 ~~~~~~~~l~~~~~---~~~~~E~~~l~~~~~~ 103 (564)
.+..+..+||++|. ++|...+..|..+++.
T Consensus 95 rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~ 127 (132)
T PF05597_consen 95 RVARALNRLGVPSRKDVEALSARIDQLTAQVER 127 (132)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999996 4455566666665543
No 411
>PRK04023 DNA polymerase II large subunit; Validated
Probab=50.74 E-value=15 Score=42.40 Aligned_cols=68 Identities=16% Similarity=0.077 Sum_probs=40.6
Q ss_pred CCCccCcccccCCCCCEEcCCCC-----cccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHHcCC
Q 008465 162 PDDFRCPISLELMKDPVIVSTGQ-----TYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGI 233 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~-----t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 233 (564)
.....||-|...........||. .||..| .+. .+...||.|+..+..... ....++.....-.++-++
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~-~~~y~CPKCG~El~~~s~-~~i~l~~~~~~A~~~lg~ 696 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIE-VEEDECEKCGREPTPYSK-RKIDLKELYDRALENLGE 696 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCc-CCCCcCCCCCCCCCccce-EEecHHHHHHHHHHHhCC
Confidence 35678999998764333345874 489999 222 245679999998864332 223344444444444343
No 412
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=49.43 E-value=12 Score=43.72 Aligned_cols=42 Identities=26% Similarity=0.634 Sum_probs=29.0
Q ss_pred CCCCCCCccCcccc--cCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008465 158 APVIPDDFRCPISL--ELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 158 ~~~~p~~f~Cpic~--~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
..++|.++.||-|+ ++..|+ .+-+| |+ -.+..||+|+.++..
T Consensus 908 VNPL~PHY~Cp~Cky~Ef~~d~-svgsG--fD---------LpdK~CPkCg~pl~k 951 (1444)
T COG2176 908 VNPLPPHYLCPECKYSEFIDDG-SVGSG--FD---------LPDKDCPKCGTPLKK 951 (1444)
T ss_pred cCCCCccccCCCCceeeeecCC-CcCCC--CC---------CCCCCCCcCCCcccc
Confidence 45788899999997 455555 22223 32 357899999998763
No 413
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=49.31 E-value=19 Score=41.88 Aligned_cols=47 Identities=17% Similarity=0.391 Sum_probs=36.3
Q ss_pred CccCcccccCC-----CCCEEc--CCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 164 DFRCPISLELM-----KDPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm-----~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45799998743 356553 588889999997666789999999987765
No 414
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=48.39 E-value=1.4 Score=33.50 Aligned_cols=41 Identities=20% Similarity=0.435 Sum_probs=20.8
Q ss_pred CccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 164 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
+..||.|...|. ...|+.+|..|-..+.. ...||.|++++.
T Consensus 1 e~~CP~C~~~L~----~~~~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELE----WQGGHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEE----EETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCccE----EeCCEEECcccccccee--cccCCCcccHHH
Confidence 467999997654 22367777777543222 456999998875
No 415
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=48.27 E-value=7.6 Score=34.54 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=17.9
Q ss_pred CCccCcccccCCCCCEEcCCC
Q 008465 163 DDFRCPISLELMKDPVIVSTG 183 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~~~cg 183 (564)
++..||||++...+.|.+-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467899999999999998654
No 416
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=48.26 E-value=1.6e+02 Score=25.90 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHH-HHHhhCC---CCHHHHHHHHHHHHhccc
Q 008465 255 ERTKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPL-LVGLLST---PDSRTQEHAVTALLNLSI 328 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s-~~~~~~~~al~~L~~L~~~~-~~~r~~i~~~g~i~~-Lv~lL~~---~~~~i~~~A~~~L~nLs~ 328 (564)
....+..|.+.|.+ .++.++..|+..|..+.+.. ......++..+++.. |++++.. .+..++...+..+...+.
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 35789999999985 58999999999999988754 345667778899987 9999974 245788888888877764
No 417
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=48.00 E-value=3.1e+02 Score=27.71 Aligned_cols=200 Identities=9% Similarity=0.047 Sum_probs=115.4
Q ss_pred hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc-hhhHhhh--cCChHHHHHhhccCC--HHHHHHHHHHHHHh
Q 008465 334 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE-NKVTIGA--SGAIPPLVTLLSEGT--QRGKKDAATALFNL 408 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~-~~~~i~~--~g~i~~Lv~lL~~~~--~~~~~~a~~aL~nL 408 (564)
..+.++|.+..++.-|.....+.+..++.+..++-.-+- .+....+ ..-.+.+..+++... +++.- +++....=
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL-~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIAL-TCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHH-HHHHHHHH
Confidence 456689999999999999999999988888887754321 1111111 011222222222211 22222 22222222
Q ss_pred hcccCh-hHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhc-CChhhHHHHHhcC---ChHH-HHHHHhcCChHHHHH
Q 008465 409 CIYQGN-KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILS-SHPEGKAAIGAAE---AVPV-LVEVIGNGSPRNREN 482 (564)
Q Consensus 409 ~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~~~~~~i~~~g---~i~~-Lv~lL~~~~~~~k~~ 482 (564)
|...+. ...+....-+.........+.-++...|..++..+. .+.....++...+ ..+. --.++.+++--++..
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 222222 223445566666666666677778888888887654 4433344444332 2233 455677888888888
Q ss_pred HHHHHHHHhcCCH---HHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 483 AAAVLVHLCAGDQ---QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 483 A~~~L~~L~~~~~---~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
+..+|..+-.+.+ .-.+.+-+...+..++.++++.+...+-.|=..-+.+..
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhc
Confidence 8888888765433 223444445567788888888877777766665555543
No 418
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=47.69 E-value=3.5e+02 Score=28.19 Aligned_cols=146 Identities=16% Similarity=0.113 Sum_probs=78.8
Q ss_pred hcCChHHHHHhhccCC-HHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhc-cC--CCcchHHHHHHHHHHhcCChh
Q 008465 379 ASGAIPPLVTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLL-TE--PGGGMVDEALAILAILSSHPE 454 (564)
Q Consensus 379 ~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL-~~--~~~~~~~~al~~L~~L~~~~~ 454 (564)
+.+-.+.+-.-+...+ ..-+..|+..|..|+...+....-+-.+.+..++.-. .+ .+..-++.|+..+..|+....
T Consensus 208 EddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~ 287 (370)
T PF08506_consen 208 EDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGS 287 (370)
T ss_dssp HHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS-
T ss_pred ccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhc
Confidence 3333333333333333 3446677888888886433221111112333333221 12 445678889999998876442
Q ss_pred h-------------HHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHH
Q 008465 455 G-------------KAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRG 521 (564)
Q Consensus 455 ~-------------~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~ 521 (564)
. ...+....++|.|. -=.+..|-+|..|+..+...-..-+. ..+ .++++.|+..+.+++.-+
T Consensus 288 t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 288 TTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp -BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTTSS-HHH
T ss_pred cccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhCCCCcch
Confidence 1 12333334455543 10124477888999888877665432 122 248999999999999988
Q ss_pred HHHHHHHH
Q 008465 522 KRKAAQLL 529 (564)
Q Consensus 522 k~~A~~lL 529 (564)
.-.|+.++
T Consensus 363 ~tyAA~~i 370 (370)
T PF08506_consen 363 HTYAAIAI 370 (370)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhhC
Confidence 88887654
No 419
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=46.62 E-value=12 Score=39.52 Aligned_cols=68 Identities=24% Similarity=0.254 Sum_probs=50.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHH-cCChHHHHHhccCCCcchHHHHHHHHHHhcC
Q 008465 384 PPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTEPGGGMVDEALAILAILSS 451 (564)
Q Consensus 384 ~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~ 451 (564)
..+-.+....+++++..|..++.|++.+.++|...+. ...-..++.++..+.+++-+.+..+++.+..
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3344444566899999999999999999999886553 4455667778877777777777777766554
No 420
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=44.73 E-value=22 Score=35.57 Aligned_cols=49 Identities=12% Similarity=0.275 Sum_probs=37.5
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHh-CCCCCCCCCCCCc
Q 008465 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA-GHRTCPKTQQTLT 210 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~-~~~~CP~~~~~l~ 210 (564)
.++-.|-||-+-..=-..+||||..|..|-.+...- ....||.|+..-.
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 456789999987776667899999999997765432 3567999987643
No 421
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=44.40 E-value=11 Score=37.27 Aligned_cols=26 Identities=12% Similarity=0.531 Sum_probs=17.3
Q ss_pred CccCcccccCCC--CC-EEcCCCCcccHH
Q 008465 164 DFRCPISLELMK--DP-VIVSTGQTYERS 189 (564)
Q Consensus 164 ~f~Cpic~~lm~--dP-v~~~cg~t~~r~ 189 (564)
.|.||+|+..|. +. ..-+.||+|+..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 389999999885 22 223457887654
No 422
>PLN02400 cellulose synthase
Probab=44.23 E-value=12 Score=43.71 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=35.9
Q ss_pred CccCcccccCC-----CCCEEc--CCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 164 DFRCPISLELM-----KDPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm-----~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.-.|.||.+-. =+|.+. .||.-.||.|.+-=.++|+..||.|+....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 34899999743 245543 588889999997666789999999987665
No 423
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=44.21 E-value=3.2e+02 Score=26.87 Aligned_cols=127 Identities=17% Similarity=0.090 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHH-HHHHhhCC--CCHHHHHHHHHHHHhcccCCcc
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIP-LLVGLLST--PDSRTQEHAVTALLNLSICEDN 332 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~-~Lv~lL~~--~~~~i~~~A~~~L~nLs~~~~~ 332 (564)
.+.++.|.+.|...++..+ ..+..+.+.++++ -|+.+|.+ +++++-..++..|.+|+.--+.
T Consensus 12 l~~LkdL~r~lr~dd~~~~---------------~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~ 76 (266)
T PF04821_consen 12 LECLKDLKRFLRRDDEDQR---------------DVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIEL 76 (266)
T ss_pred HHHHHHHHHHHHHhCcchH---------------HHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHH
Confidence 3566677777766554332 2233333444433 34444433 3788889999999999741110
Q ss_pred chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhcc-----------CCHHHHHHH
Q 008465 333 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE-----------GTQRGKKDA 401 (564)
Q Consensus 333 ~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a 401 (564)
- .+-. ..+...+.........+ ..+|..+...+++..++.++.. .+..+.+..
T Consensus 77 ~-----~~~~--------~~~~~~~~~~~~l~~~l---~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lv 140 (266)
T PF04821_consen 77 L-----VESQ--------PKDKNQRRNIPELLKYL---QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELV 140 (266)
T ss_pred h-----ccCC--------CCChHHHHHHHHHHHHH---HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHH
Confidence 0 0000 00111111111222222 2355556666666666655521 134567888
Q ss_pred HHHHHHhhcccC
Q 008465 402 ATALFNLCIYQG 413 (564)
Q Consensus 402 ~~aL~nL~~~~~ 413 (564)
+..+.|+..-++
T Consensus 141 L~LiRNlL~Ip~ 152 (266)
T PF04821_consen 141 LTLIRNLLAIPD 152 (266)
T ss_pred HHHHHHHhcCCC
Confidence 888999876533
No 424
>PF04641 Rtf2: Rtf2 RING-finger
Probab=43.30 E-value=21 Score=35.18 Aligned_cols=35 Identities=23% Similarity=0.501 Sum_probs=31.0
Q ss_pred CccCcccccCCCCCEEc-CCCCcccHHHHHHHHHhC
Q 008465 164 DFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAG 198 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~~ 198 (564)
-+.|+++++.+.+||+. ..|+-|....|-+|+...
T Consensus 34 w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 34 WTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred cCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 57999999999999864 679999999999999753
No 425
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=43.30 E-value=18 Score=38.29 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=45.1
Q ss_pred cCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 474 NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 474 ~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
..++++++.|..++.+++.+....+..+-+..+-..+++++..+.+++-+.|..++..+.+
T Consensus 339 ~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 339 HKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred ccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 4569999999999999987654333333445566778888888888888888877777664
No 426
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=42.76 E-value=30 Score=30.72 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=13.9
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHH
Q 008465 465 VPVLVEVIGNGSPRNRENAAAVLVH 489 (564)
Q Consensus 465 i~~Lv~lL~~~~~~~k~~A~~~L~~ 489 (564)
|..|+++|.+.++.+...|+.+|.+
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKN 120 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 6666666665566666666666655
No 427
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=42.54 E-value=2.2e+02 Score=29.87 Aligned_cols=133 Identities=14% Similarity=0.093 Sum_probs=79.7
Q ss_pred hHHHHHHHhcCC-HHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhc---c-------CCHHHHHHHHHHHHHhhc
Q 008465 342 VPSIVHVLRIGS-MEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS---E-------GTQRGKKDAATALFNLCI 410 (564)
Q Consensus 342 i~~Lv~lL~~~~-~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~-------~~~~~~~~a~~aL~nL~~ 410 (564)
-..|+.+|..+. ...+...+.++.-||.+...-.-+....-...|+.+.+ . .+..+...++.+|+|+..
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 356777887774 55566777788888766543333332233334443332 1 245778899999999998
Q ss_pred ccChhH-HHHHcCChHHHHHhccC-C---C-cchHHHHHHHHHHhc-CChhhHHHH-HhcCChHHHHHHHhc
Q 008465 411 YQGNKG-KAVRAGVVPTLMHLLTE-P---G-GGMVDEALAILAILS-SHPEGKAAI-GAAEAVPVLVEVIGN 474 (564)
Q Consensus 411 ~~~~~~-~i~~~g~i~~Lv~lL~~-~---~-~~~~~~al~~L~~L~-~~~~~~~~i-~~~g~i~~Lv~lL~~ 474 (564)
+..... ...+......+.+.+.. . . ..+.-.=+..|.-|+ -..+.|.++ .+.++++.+..+|.+
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 866544 45566666666666532 1 1 123333355555443 234566554 556889999999865
No 428
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=42.48 E-value=12 Score=26.55 Aligned_cols=13 Identities=38% Similarity=0.933 Sum_probs=11.4
Q ss_pred CCCCCccCccccc
Q 008465 160 VIPDDFRCPISLE 172 (564)
Q Consensus 160 ~~p~~f~Cpic~~ 172 (564)
.+|+++.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 5899999999974
No 429
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=42.06 E-value=2.5e+02 Score=25.94 Aligned_cols=139 Identities=16% Similarity=0.100 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhcccChhHH------HH------HcCChHHHHH-hccCCCcchHHHHHHHHHHhcCChhhHHHHHh--
Q 008465 397 GKKDAATALFNLCIYQGNKGK------AV------RAGVVPTLMH-LLTEPGGGMVDEALAILAILSSHPEGKAAIGA-- 461 (564)
Q Consensus 397 ~~~~a~~aL~nL~~~~~~~~~------i~------~~g~i~~Lv~-lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~-- 461 (564)
+|..|+.+|..++...+.|.. ++ ..+.-+.|+. ++.++++.++..|+.+|..|-.+...--...+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 456666677666665333221 11 1223444444 45778999999999999977654322111111
Q ss_pred ---c---------------CChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHH-HHHHHcCCHHHHHHhhhcCCHHH
Q 008465 462 ---A---------------EAVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQQYL-AEAKELGVMGPLVDLAQNGTDRG 521 (564)
Q Consensus 462 ---~---------------g~i~~Lv~lL~~-~~~~~k~~A~~~L~~L~~~~~~~~-~~~~~~g~i~~L~~Ll~~~~~~~ 521 (564)
. ..-..|+..|.. .++.......++|..|....|-.+ +.=+-..++..+..++.+.+..+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 0 011334444544 346677788888888888776332 22122235666777778888889
Q ss_pred HHHHHHHHHHHHhh
Q 008465 522 KRKAAQLLERMSRF 535 (564)
Q Consensus 522 k~~A~~lL~~l~~~ 535 (564)
+..+..++..+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 98888888877653
No 430
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=41.19 E-value=1.7e+02 Score=31.70 Aligned_cols=111 Identities=16% Similarity=0.236 Sum_probs=69.8
Q ss_pred cCChHHHHHhccCCCcchHHHHHHHHHHhcCChhh----HHHHHhcCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCC-
Q 008465 421 AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEG----KAAIGAAEAVPVLVEVIGN-GSPRNRENAAAVLVHLCAGD- 494 (564)
Q Consensus 421 ~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~----~~~i~~~g~i~~Lv~lL~~-~~~~~k~~A~~~L~~L~~~~- 494 (564)
.++|+.+++.+. .+.+.+--+.++. +..++. ..++.+.+.|+.|+.+|.. .++..+.+|+.+|..|..-+
T Consensus 20 ~~~v~~llkHI~--~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHID--TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcC--CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 466677776664 3444444444444 232233 3455567999999999974 45778888888877764311
Q ss_pred ------------HHHHHHHHHcCCHHHHHHhhh--cCCHHHHHHHHHHHHHHHhh
Q 008465 495 ------------QQYLAEAKELGVMGPLVDLAQ--NGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 495 ------------~~~~~~~~~~g~i~~L~~Ll~--~~~~~~k~~A~~lL~~l~~~ 535 (564)
..-...+.....+..|+..+- .+...+.....-++..|++.
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 234455666678888888876 44555555555677777655
No 431
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=40.93 E-value=40 Score=24.87 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCcCC
Q 008465 198 GHRTCPKTQQTLTST 212 (564)
Q Consensus 198 ~~~~CP~~~~~l~~~ 212 (564)
.|++||.|+.+++..
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 467788888777643
No 432
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=40.80 E-value=63 Score=28.76 Aligned_cols=66 Identities=26% Similarity=0.273 Sum_probs=35.7
Q ss_pred HHHHHhhccCCHHHHHHH----HHHHHHhhcccCh-----hHHHHH-----cC--ChHHHHHhccCCCcchHHHHHHHHH
Q 008465 384 PPLVTLLSEGTQRGKKDA----ATALFNLCIYQGN-----KGKAVR-----AG--VVPTLMHLLTEPGGGMVDEALAILA 447 (564)
Q Consensus 384 ~~Lv~lL~~~~~~~~~~a----~~aL~nL~~~~~~-----~~~i~~-----~g--~i~~Lv~lL~~~~~~~~~~al~~L~ 447 (564)
..|++||.+.-+.+...| +..|..++..... +...++ .| -|.+|+.+|.+.+..+...|..+|.
T Consensus 40 ~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYNV~~LI~~L~~~d~~lA~~Aa~aLk 119 (154)
T PF11791_consen 40 AFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYNVQPLIDLLKSDDEELAEEAAEALK 119 (154)
T ss_dssp HHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTTHHHHHHGG--G-TTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCcHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 467777766533222222 3446666554332 222221 23 4889999998888899999999888
Q ss_pred Hh
Q 008465 448 IL 449 (564)
Q Consensus 448 ~L 449 (564)
+.
T Consensus 120 ~T 121 (154)
T PF11791_consen 120 NT 121 (154)
T ss_dssp T-
T ss_pred hh
Confidence 54
No 433
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=40.09 E-value=18 Score=29.09 Aligned_cols=37 Identities=22% Similarity=0.526 Sum_probs=28.4
Q ss_pred CccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 164 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.-.|-+|..-...| |+.||..|-.+ ...|.+|+..+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc-----cCcccccCCeec
Confidence 34899999766654 88999999532 448999999874
No 434
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=39.80 E-value=38 Score=28.32 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHH
Q 008465 439 VDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRN 479 (564)
Q Consensus 439 ~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 479 (564)
....+.-|..|+..|+--..+++.|+++.|+.+|.+.+.++
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 45678888899999999899999999999999998766543
No 435
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=39.77 E-value=20 Score=39.78 Aligned_cols=44 Identities=23% Similarity=0.575 Sum_probs=32.5
Q ss_pred CccCcccccCCCCCEE--cCCCCcccHHHHHHHHHhCCCCCCC-CCCC
Q 008465 164 DFRCPISLELMKDPVI--VSTGQTYERSCIEKWLEAGHRTCPK-TQQT 208 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~--~~cg~t~~r~ci~~~~~~~~~~CP~-~~~~ 208 (564)
.|.|.+|.--.+--.. ..|||...-+|...||.-|. .||. |+..
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~CpsGCGC~ 1074 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPSGCGCH 1074 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCCCCCcC
Confidence 4779998765553333 47999999999999999654 7885 5543
No 436
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=39.26 E-value=15 Score=32.65 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHH-hCCCCCCCCCCCCcCC
Q 008465 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE-AGHRTCPKTQQTLTST 212 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~-~~~~~CP~~~~~l~~~ 212 (564)
...|.||-|...+. ..-.....+ .|.+.||.|+..+...
T Consensus 97 ~~~Y~Cp~C~~~y~------------~~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 97 NAYYKCPNCQSKYT------------FLEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred CcEEECcCCCCEee------------HHHHHHhcCCCCcEECCCCCCEEEEc
Confidence 45799997764443 211111111 2558999999988643
No 437
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=38.61 E-value=26 Score=28.80 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=32.2
Q ss_pred CCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHH
Q 008465 159 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEA 230 (564)
Q Consensus 159 ~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~ 230 (564)
..+|..|.||-|.. ..-||.+ ++ ..++..||.|+.-.... +.+-...-+....|.+.
T Consensus 16 ~klpt~f~CP~Cge-~~v~v~~--~k-----------~~~h~~C~~CG~y~~~~-V~~l~epIDVY~~wiD~ 72 (99)
T PRK14892 16 PKLPKIFECPRCGK-VSISVKI--KK-----------NIAIITCGNCGLYTEFE-VPSVYDEVDVYNKFIDL 72 (99)
T ss_pred cCCCcEeECCCCCC-eEeeeec--CC-----------CcceEECCCCCCccCEE-CCccccchhhHHHHHHH
Confidence 35688999999995 2322222 11 13678899998865432 22222223445566553
No 438
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=38.43 E-value=25 Score=34.61 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=24.7
Q ss_pred CccCcccccCCC-CC-EE-cCCCCcccHHHHHHHHH
Q 008465 164 DFRCPISLELMK-DP-VI-VSTGQTYERSCIEKWLE 196 (564)
Q Consensus 164 ~f~Cpic~~lm~-dP-v~-~~cg~t~~r~ci~~~~~ 196 (564)
.-.|-||+.-|. .| .+ ++|-|-|-..|+.+++.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~ 150 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLT 150 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHH
Confidence 567999997664 45 44 58999888888877765
No 439
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.42 E-value=63 Score=30.43 Aligned_cols=44 Identities=14% Similarity=0.340 Sum_probs=34.7
Q ss_pred cCcccccCC--CCCEEcCCCCcccHHHHHHHHHh-------CCCCCCCCCCCC
Q 008465 166 RCPISLELM--KDPVIVSTGQTYERSCIEKWLEA-------GHRTCPKTQQTL 209 (564)
Q Consensus 166 ~Cpic~~lm--~dPv~~~cg~t~~r~ci~~~~~~-------~~~~CP~~~~~l 209 (564)
-|.+|...+ .|.+.+.|-|.|.-.|+..|-.. ....||.|.+.+
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 577887766 37788999999999999999863 235699998764
No 440
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=38.31 E-value=14 Score=36.35 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=28.1
Q ss_pred CccCcccccCCCC-CEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 164 DFRCPISLELMKD-PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm~d-Pv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
--+|--|.....- =-.++|.|.||..|-.. ...+.||.|..++.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~---~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS---DSDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc---CccccCcCcccHHH
Confidence 3456666532220 01369999999999642 24678999976653
No 441
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=38.16 E-value=1.8e+02 Score=24.96 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHh-CCHHHHHHhhCCCC--------HHHHHHHHHHHHh
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA-DNRVAIAEA-GAIPLLVGLLSTPD--------SRTQEHAVTALLN 325 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~-~~r~~i~~~-g~i~~Lv~lL~~~~--------~~i~~~A~~~L~n 325 (564)
...+..|.+.|+..++.++.++++.|..++...+ ..+.++... ..|..+..+-...| ..+|..|-.++..
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 3678899999999999999999999999886544 445555444 35666655554322 3455555444433
No 442
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=38.12 E-value=4.3e+02 Score=26.88 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=33.7
Q ss_pred ChHHHHHHHhcC--ChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhh
Q 008465 464 AVPVLVEVIGNG--SPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQ 515 (564)
Q Consensus 464 ~i~~Lv~lL~~~--~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~ 515 (564)
.-..++.++-+. ++.+|..|..+|..+...++.. +...++..+...+.
T Consensus 205 ~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 205 WAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLWKWLS 254 (339)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHH
Confidence 455677777776 7899999999999999888764 22234445555543
No 443
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=37.83 E-value=14 Score=25.87 Aligned_cols=13 Identities=38% Similarity=0.933 Sum_probs=8.5
Q ss_pred CCCCCccCccccc
Q 008465 160 VIPDDFRCPISLE 172 (564)
Q Consensus 160 ~~p~~f~Cpic~~ 172 (564)
.+|+++.||+|.-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 6899999999974
No 444
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.77 E-value=6.5e+02 Score=28.52 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=84.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcc--cCCcc----chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhh
Q 008465 302 PLLVGLLSTPDSRTQEHAVTALLNLS--ICEDN----KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKV 375 (564)
Q Consensus 302 ~~Lv~lL~~~~~~i~~~A~~~L~nLs--~~~~~----~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~ 375 (564)
|.|.+-|+..+..+|.+|+..+.++- .+++. ...+++. -...+..+|.++.+.+|..|..-+.... ..+..
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~--s~fWe 253 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKIT--SKFWE 253 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHH--HHHHH
Confidence 56677778889999999999999983 23332 3333332 3566888999998888887776555442 12222
Q ss_pred HhhhcCChHHHHHhh-----ccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhc
Q 008465 376 TIGASGAIPPLVTLL-----SEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILS 450 (564)
Q Consensus 376 ~i~~~g~i~~Lv~lL-----~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~ 450 (564)
.| -..++..|+..+ .+...+++-.....|-.+..++.....+ + -++|.|=..|.+....++.++...|..+-
T Consensus 254 ~i-P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l-e-~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 254 MI-PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL-E-QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred Hc-CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH-H-HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 22 222222222221 1223466666677777776665544321 1 12334444555566778888888777664
Q ss_pred C
Q 008465 451 S 451 (564)
Q Consensus 451 ~ 451 (564)
.
T Consensus 331 ~ 331 (1005)
T KOG1949|consen 331 A 331 (1005)
T ss_pred h
Confidence 4
No 445
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=37.62 E-value=81 Score=31.63 Aligned_cols=59 Identities=29% Similarity=0.325 Sum_probs=47.5
Q ss_pred ChhhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC--------------hhhHHHHHHhCCHHHHHHhhCC
Q 008465 252 SPAERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN--------------ADNRVAIAEAGAIPLLVGLLST 310 (564)
Q Consensus 252 ~~~~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~--------------~~~r~~i~~~g~i~~Lv~lL~~ 310 (564)
.......+..+++.|.+++...+..|+++|..++.+. ..|...+.+.|+++.|+.+|+.
T Consensus 55 ~~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 55 FDQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hhhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3456788999999999999999999999999987543 2445567788999999988864
No 446
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.32 E-value=2.3e+02 Score=30.41 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhh-HHHHHHhCCHHHHHHhhCCC--CHHHHHHHHHHHHhc
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADN-RVAIAEAGAIPLLVGLLSTP--DSRTQEHAVTALLNL 326 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~-r~~i~~~g~i~~Lv~lL~~~--~~~i~~~A~~~L~nL 326 (564)
.+.+..|.++|.+.++.+|..|+..|..+.+..-.. ...|++.++++-+|.+.+.. +..+|+.++..|-.-
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 478999999999988899999999888888754443 34788889999999988765 678899888777554
No 447
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=37.21 E-value=4e+02 Score=32.22 Aligned_cols=233 Identities=19% Similarity=0.076 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChh--hHHHHHHhCCHHHHH--------HhhCC-CCHHHHHHHHHHHH
Q 008465 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNAD--NRVAIAEAGAIPLLV--------GLLST-PDSRTQEHAVTALL 324 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~--~r~~i~~~g~i~~Lv--------~lL~~-~~~~i~~~A~~~L~ 324 (564)
.+.++.|+..+.+.+|+.|.-+.-.|+.+.+.... ++.. .+.-++..+. ++... --..+++..+++|.
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~-led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYEL-LEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHH-HHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 36788889888899999998888888877653221 1211 1111111110 01110 01245666666666
Q ss_pred hcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHh--hhcCChHHHHHhhccCCHHHHHHHH
Q 008465 325 NLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTI--GASGAIPPLVTLLSEGTQRGKKDAA 402 (564)
Q Consensus 325 nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i--~~~g~i~~Lv~lL~~~~~~~~~~a~ 402 (564)
.+..+..... -...++.+..++....++++.-.+..+.+.-. -.+..+ .-..+++..++-|.+.+..++..|+
T Consensus 155 ~~l~~~~~s~---~~~~~~il~q~~~q~~w~ir~Ggll~iky~~a--ir~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 155 AYLKHMDESL---IKETLDILLQMLRQPNWEIRHGGLLGIKYNVA--IRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAA 229 (1549)
T ss_pred HHHHhhhhHh---hHHHHHHHHHHHcCcchhheechHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHH
Confidence 6654322100 01224445555555544443322222211110 000000 1113556667777777888888888
Q ss_pred HHHHHhhcccChhHHHHHcCChHHHHHhccCCCc--chHHHHHHHHHHhcCChhhHHHH----HhcCChHHHHHHHhcCC
Q 008465 403 TALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGG--GMVDEALAILAILSSHPEGKAAI----GAAEAVPVLVEVIGNGS 476 (564)
Q Consensus 403 ~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~al~~L~~L~~~~~~~~~i----~~~g~i~~Lv~lL~~~~ 476 (564)
..|.-......+...---..++..+...+..-+. .-.......|..++...+..... ...|.+|.+..++++.=
T Consensus 230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i 309 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTI 309 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence 8777655443211110011233333333322111 11222334444555554322211 12478899999998766
Q ss_pred hHHHHHHHHHHHHHhcCC
Q 008465 477 PRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 477 ~~~k~~A~~~L~~L~~~~ 494 (564)
..++..+...+..|...+
T Consensus 310 ~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 310 SSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 677888888887776543
No 448
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=36.99 E-value=2e+02 Score=29.54 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=60.6
Q ss_pred ChHHHHHhhccC-------CHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccC----------CCcchHHHHHH
Q 008465 382 AIPPLVTLLSEG-------TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE----------PGGGMVDEALA 444 (564)
Q Consensus 382 ~i~~Lv~lL~~~-------~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~~~al~ 444 (564)
.+|.++.++.++ +-......+..+..|..++.-.....-.-++|.++.++-. .+..+++.|..
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 456666665443 3445556667777777777665544444578888877633 22368899999
Q ss_pred HHHHhcCChhhHHHHHhcCChHHHHHHHhcC-Ch-HHHHHHHHHHHHHh
Q 008465 445 ILAILSSHPEGKAAIGAAEAVPVLVEVIGNG-SP-RNRENAAAVLVHLC 491 (564)
Q Consensus 445 ~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~-~~k~~A~~~L~~L~ 491 (564)
+|..++..-...-.-+...++..+.+.|.+. .+ ...--|+..|..|.
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 9998874211110001122333455444432 23 33555666666554
No 449
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=36.55 E-value=3.9e+02 Score=25.63 Aligned_cols=127 Identities=17% Similarity=0.088 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccC-------------CH-H----HHHHHHHHHHHhhcccChhH
Q 008465 355 EARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG-------------TQ-R----GKKDAATALFNLCIYQGNKG 416 (564)
Q Consensus 355 e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-------------~~-~----~~~~a~~aL~nL~~~~~~~~ 416 (564)
.....++..+..|...++....+...+.++.+.+.|..- ++ . .-..-...|+.|+.++.+..
T Consensus 79 ~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~ 158 (226)
T PF14666_consen 79 KYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGLK 158 (226)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHHH
Confidence 344556666777776666666666667777777666432 11 1 12233567888899988888
Q ss_pred HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChH-HHHHHHhcCChHHHHHHHHHHHHHh
Q 008465 417 KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVP-VLVEVIGNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 417 ~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~-~Lv~lL~~~~~~~k~~A~~~L~~L~ 491 (564)
.+-+.+++..+..++...+. .+...-+|.+|-..-+ |-.. .|-..|.+++..+|..|...|..+.
T Consensus 159 lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~--------~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 159 LLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVD--------GHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCc--------cHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 88889999999999976432 2233334555532222 2222 2344678888999999998887664
No 450
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=36.26 E-value=32 Score=38.51 Aligned_cols=48 Identities=23% Similarity=0.576 Sum_probs=36.7
Q ss_pred CCccCccccc--CCCCCEEcCCCCc-----ccHHHHHHHHHh-CCCCCCCCCCCCc
Q 008465 163 DDFRCPISLE--LMKDPVIVSTGQT-----YERSCIEKWLEA-GHRTCPKTQQTLT 210 (564)
Q Consensus 163 ~~f~Cpic~~--lm~dPv~~~cg~t-----~~r~ci~~~~~~-~~~~CP~~~~~l~ 210 (564)
++-.|.||.. .-.||..-||.++ ..++|+..|+.. +...|-.|+.++.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 4578999874 4467887788654 578999999984 5678999988765
No 451
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=36.23 E-value=28 Score=35.11 Aligned_cols=49 Identities=27% Similarity=0.466 Sum_probs=36.0
Q ss_pred CccCcccccCCCC----CEEcCCCC-----cccHHHHHHHHH-hCCCCCCCCCCCCcCC
Q 008465 164 DFRCPISLELMKD----PVIVSTGQ-----TYERSCIEKWLE-AGHRTCPKTQQTLTST 212 (564)
Q Consensus 164 ~f~Cpic~~lm~d----Pv~~~cg~-----t~~r~ci~~~~~-~~~~~CP~~~~~l~~~ 212 (564)
...|-||...... |...+|.. ...+.|++.|+. .++..|..|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4899999985532 56666643 356999999997 5678899998866533
No 452
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=36.14 E-value=87 Score=31.98 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcccCCccchhhhccC--ChHHHHHHHhcC---CHHHHHHHHHHHHhccCCcchhhHhhh-------cC
Q 008465 314 RTQEHAVTALLNLSICEDNKGSIVSSG--AVPSIVHVLRIG---SMEARENAAATLFSLSVIDENKVTIGA-------SG 381 (564)
Q Consensus 314 ~i~~~A~~~L~nLs~~~~~~~~i~~~g--~i~~Lv~lL~~~---~~e~~~~a~~~L~~Ls~~~~~~~~i~~-------~g 381 (564)
.++..|+..|..+..+......+...+ .+..|+++++.+ ..+++..|..+|..++........+.. .|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 356667777777776666677777655 999999999875 478899999999999876543333322 26
Q ss_pred ChHHHHHh
Q 008465 382 AIPPLVTL 389 (564)
Q Consensus 382 ~i~~Lv~l 389 (564)
++..+++-
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 66665543
No 453
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=35.88 E-value=2e+02 Score=31.65 Aligned_cols=106 Identities=14% Similarity=0.002 Sum_probs=74.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhc-
Q 008465 260 EILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVS- 338 (564)
Q Consensus 260 ~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~- 338 (564)
..++....+-++..+..+...|+.....-|+ .+..-.++..+-..|++.+..++.....+|..|+...++...+..
T Consensus 278 svfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f 354 (740)
T COG5537 278 SVFVSRYIDVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRF 354 (740)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3445555566777788888888877654444 334444667777788888899999999999999987777664442
Q ss_pred -cCChHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 008465 339 -SGAVPSIVHVLRIGSMEARENAAATLFSLS 368 (564)
Q Consensus 339 -~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls 368 (564)
...-..|++++..+..-+|..+..++..|.
T Consensus 355 ~eRFk~rILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 355 VERFKDRILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 456667888887774447777777666664
No 454
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=35.75 E-value=15 Score=25.58 Aligned_cols=44 Identities=14% Similarity=0.344 Sum_probs=22.7
Q ss_pred ccCcccccCCCCCEEcCC-CCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008465 165 FRCPISLELMKDPVIVST-GQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 165 f~Cpic~~lm~dPv~~~c-g~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
+.|--|-- .+--.+.| .|-.|..|+...+.. ...||.|+.+++.
T Consensus 3 ~nCKsCWf--~~k~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 3 YNCKSCWF--ANKGLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp ----SS-S----SSEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred ccChhhhh--cCCCeeeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 34444442 23334555 577899999988874 5669999999874
No 455
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.48 E-value=18 Score=23.02 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=7.9
Q ss_pred CCCCCCCCCCC
Q 008465 198 GHRTCPKTQQT 208 (564)
Q Consensus 198 ~~~~CP~~~~~ 208 (564)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 45679988764
No 456
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.48 E-value=29 Score=35.32 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=18.2
Q ss_pred CEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 177 PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 177 Pv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
|+..|-|++|-...|..|-...+-.||.++..+.
T Consensus 346 P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~ 379 (389)
T KOG0396|consen 346 PHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFR 379 (389)
T ss_pred cccccCceeehhHHHHhhcccCCCcCCCCCcccc
Confidence 5555666666666665554432245665555443
No 457
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=35.37 E-value=1.9e+02 Score=24.14 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=49.4
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhh------hcCCHHHHHHHHHHHHHHH
Q 008465 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLA------QNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~Ll------~~~~~~~k~~A~~lL~~l~ 533 (564)
++..|..-|.+.++..+..|+.+|-.++.+.+ .+...+....++..++.+. ...+..+|+++..++....
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 45566666777889999999999999887665 5566666666665555431 1226788999998887653
No 458
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.02 E-value=54 Score=23.75 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCCCCCCCcCC
Q 008465 181 STGQTYERSCIEKWLEAGHRTCPKTQQTLTST 212 (564)
Q Consensus 181 ~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 212 (564)
+=..|||..|.+..+ +..||.|+-.|...
T Consensus 26 SfECTFC~~C~e~~l---~~~CPNCgGelv~R 54 (57)
T PF06906_consen 26 SFECTFCADCAETML---NGVCPNCGGELVRR 54 (57)
T ss_pred eEeCcccHHHHHHHh---cCcCcCCCCccccC
Confidence 335789999998876 35799998877543
No 459
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=32.57 E-value=4e+02 Score=27.72 Aligned_cols=126 Identities=19% Similarity=0.116 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhccCCcchhhHhhhc--CChHHHHHhh-c--cCCHHHHHHHHHHHHHhhcccCh-------------hHH
Q 008465 356 ARENAAATLFSLSVIDENKVTIGAS--GAIPPLVTLL-S--EGTQRGKKDAATALFNLCIYQGN-------------KGK 417 (564)
Q Consensus 356 ~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL-~--~~~~~~~~~a~~aL~nL~~~~~~-------------~~~ 417 (564)
-|..|+..|..|+.. ....+... +.+..++.-. . +.+.+-+..|+..+..|+..... ...
T Consensus 227 rR~AA~dfl~~L~~~--~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 227 RRRAACDFLRSLCKK--FEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred cHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 466777888888743 11111111 2222222211 1 23556777888888888876532 223
Q ss_pred HHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHH
Q 008465 418 AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVL 487 (564)
Q Consensus 418 i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L 487 (564)
+...-++|.|. -=.+..+-++..|++.+......- .+..+. +++|.++..|.+++.-+...|+.++
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 44445555554 111245668888999888776542 233333 3799999999999988998888664
No 460
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=32.38 E-value=3.5e+02 Score=24.29 Aligned_cols=80 Identities=19% Similarity=0.308 Sum_probs=54.6
Q ss_pred HHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHH-hcC-ChHHHHH-HHhcCC--hHHHHHHHHHHHHH
Q 008465 416 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIG-AAE-AVPVLVE-VIGNGS--PRNRENAAAVLVHL 490 (564)
Q Consensus 416 ~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~-~~g-~i~~Lv~-lL~~~~--~~~k~~A~~~L~~L 490 (564)
..+++....+.|+..+.+.+..+...++.++..|... .+..+. +-+ .++.++. ++.+.+ ..-|+.++.++..+
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~--~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l 144 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR--FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILREL 144 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 3456778888888888777788899999999988743 222221 112 3555555 666443 46788899999999
Q ss_pred hcCCHHHH
Q 008465 491 CAGDQQYL 498 (564)
Q Consensus 491 ~~~~~~~~ 498 (564)
|.. |...
T Consensus 145 ~~~-p~~l 151 (168)
T PF12783_consen 145 CKD-PQFL 151 (168)
T ss_pred HhC-hhHH
Confidence 974 4443
No 461
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=32.37 E-value=47 Score=27.68 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=20.4
Q ss_pred CCcccHHHHHHHHHh--------CCCCCCCCCCC
Q 008465 183 GQTYERSCIEKWLEA--------GHRTCPKTQQT 208 (564)
Q Consensus 183 g~t~~r~ci~~~~~~--------~~~~CP~~~~~ 208 (564)
.-.||..|+..++.+ ++..||.|+..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 456999999998863 46789999763
No 462
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=32.25 E-value=5.9e+02 Score=26.40 Aligned_cols=132 Identities=14% Similarity=0.042 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHhcccCCccchhhhccC---ChHHHHHHHhcC--CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHH
Q 008465 312 DSRTQEHAVTALLNLSICEDNKGSIVSSG---AVPSIVHVLRIG--SMEARENAAATLFSLSVIDENKVTIGASGAIPPL 386 (564)
Q Consensus 312 ~~~i~~~A~~~L~nLs~~~~~~~~i~~~g---~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L 386 (564)
+..+..+|+.+|..+..++.--..+-..- .+...+..|..+ +..+.....++|..= .....+.....+..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q----~f~~~~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ----KFSPKIMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCCCcccchhhHHHH
Confidence 56777889999988876654433333221 345555566444 233444444444332 222234444445555
Q ss_pred HHhhcc-----CCHHHHHHHHHHHHHhhcccChhHHHHH-c-CChHHHHHhccCCCcchHHHHHHHHHHh
Q 008465 387 VTLLSE-----GTQRGKKDAATALFNLCIYQGNKGKAVR-A-GVVPTLMHLLTEPGGGMVDEALAILAIL 449 (564)
Q Consensus 387 v~lL~~-----~~~~~~~~a~~aL~nL~~~~~~~~~i~~-~-g~i~~Lv~lL~~~~~~~~~~al~~L~~L 449 (564)
+..+.. ++..+....+.++.+|....+.. |++ . --++.++..+-+....++..|..++..+
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ--MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEA 202 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 555432 34566677888888887654432 332 2 3677777777666667777766666544
No 463
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=32.02 E-value=26 Score=21.12 Aligned_cols=6 Identities=33% Similarity=0.672 Sum_probs=2.9
Q ss_pred Cccccc
Q 008465 167 CPISLE 172 (564)
Q Consensus 167 Cpic~~ 172 (564)
||-|..
T Consensus 3 CP~C~~ 8 (26)
T PF10571_consen 3 CPECGA 8 (26)
T ss_pred CCCCcC
Confidence 554443
No 464
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=31.98 E-value=1.8e+02 Score=30.12 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=58.7
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhh-cCCHHHHHHHHHHHHHHHh
Q 008465 463 EAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQ-NGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 463 g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~Ll~-~~~~~~k~~A~~lL~~l~~ 534 (564)
.++..|.+-|...++.+...|+.+|..+..+.. ..+..+-...+...|..++. +..++++++...++....+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 367788888888999999999999988877655 45677777789999999998 6688888888888777665
No 465
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=31.61 E-value=2.8e+02 Score=24.33 Aligned_cols=73 Identities=14% Similarity=0.096 Sum_probs=52.4
Q ss_pred ChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHH-HHHhhhc---CCHHHHHHHHHHHHHHHhhH
Q 008465 464 AVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGP-LVDLAQN---GTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 464 ~i~~Lv~lL~~-~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~-L~~Ll~~---~~~~~k~~A~~lL~~l~~~~ 536 (564)
++..|-.-|.. .++.+...|+.+|-.+..+.+ .....+...+++.. |+.++.. ....++.+...++.......
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 45566665653 578888989888877776654 56677777789987 9999863 24578888888887776543
No 466
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=31.41 E-value=3.6e+02 Score=30.92 Aligned_cols=153 Identities=14% Similarity=0.044 Sum_probs=90.1
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCCh-hhHHHHH
Q 008465 382 AIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIG 460 (564)
Q Consensus 382 ~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~ 460 (564)
.-..+...+.+++....+..+.++.+++.-..-...- ...-.+.-..-....-..+.+....+|..++..+ +....+.
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3445566666777777788888888776532211110 0011111111111111345667788888888764 4444554
Q ss_pred -hcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH--HHHHHHHHcCCHHHHH-------Hhhhc----CCHHHHHHHH
Q 008465 461 -AAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ--QYLAEAKELGVMGPLV-------DLAQN----GTDRGKRKAA 526 (564)
Q Consensus 461 -~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~--~~~~~~~~~g~i~~L~-------~Ll~~----~~~~~k~~A~ 526 (564)
+.++...++.++-++++++.+.|..+|......+. +....+++...-+.|. .+.+. +.+++-+...
T Consensus 521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr~vr~~~ 600 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPRMVRCLM 600 (727)
T ss_pred cCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 45789999999999999999999999999875433 4455555544333333 33222 2455666666
Q ss_pred HHHHHHHhh
Q 008465 527 QLLERMSRF 535 (564)
Q Consensus 527 ~lL~~l~~~ 535 (564)
.+|..|++.
T Consensus 601 DIi~~Lcdp 609 (727)
T PF12726_consen 601 DIIEVLCDP 609 (727)
T ss_pred HHHHHHcCC
Confidence 666666653
No 467
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=31.39 E-value=91 Score=26.39 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=33.1
Q ss_pred ChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHh
Q 008465 423 VVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGA 461 (564)
Q Consensus 423 ~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~ 461 (564)
+|+.|+.-|.++++++...|+.+|...|..+.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 577889999999999999999999999988866666654
No 468
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.25 E-value=25 Score=27.96 Aligned_cols=13 Identities=23% Similarity=0.935 Sum_probs=11.6
Q ss_pred cccHHHHHHHHHh
Q 008465 185 TYERSCIEKWLEA 197 (564)
Q Consensus 185 t~~r~ci~~~~~~ 197 (564)
.|||.|+..|..+
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999985
No 469
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=31.25 E-value=32 Score=31.24 Aligned_cols=12 Identities=17% Similarity=0.348 Sum_probs=8.5
Q ss_pred CccCcccccCCC
Q 008465 164 DFRCPISLELMK 175 (564)
Q Consensus 164 ~f~Cpic~~lm~ 175 (564)
.+.||+|+.+..
T Consensus 134 ~~vC~vCGy~~~ 145 (166)
T COG1592 134 VWVCPVCGYTHE 145 (166)
T ss_pred EEEcCCCCCccc
Confidence 688998855444
No 470
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.20 E-value=1.9e+02 Score=25.85 Aligned_cols=90 Identities=13% Similarity=0.201 Sum_probs=48.4
Q ss_pred CcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHH---HHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCChhhhhHHH
Q 008465 184 QTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVL---RSLIAQWCEANGIEPPKRPSSSRPSKTSSACSPAERTKIE 260 (564)
Q Consensus 184 ~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l---~~~i~~~~~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~i~ 260 (564)
+.||..|=.+-+. .||.|..++.-....+...- .--.-.||..-|.+.|=. ...-....
T Consensus 28 ~~fC~kCG~~tI~----~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt--------------~~~L~aa~ 89 (158)
T PF10083_consen 28 EKFCSKCGAKTIT----SCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWT--------------ENALEAAN 89 (158)
T ss_pred HHHHHHhhHHHHH----HCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchH--------------HHHHHHHH
Confidence 5688888776665 49999888763322111000 000344566555544322 11123344
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChhh
Q 008465 261 ILLCKLTSGSPEDQRSAAGEIRLLAKRNADN 291 (564)
Q Consensus 261 ~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~ 291 (564)
.|++.+..-+++.+..--..|..|.++++..
T Consensus 90 el~ee~eeLs~deke~~~~sl~dL~~d~PkT 120 (158)
T PF10083_consen 90 ELIEEDEELSPDEKEQFKESLPDLTKDTPKT 120 (158)
T ss_pred HHHHHhhcCCHHHHHHHHhhhHHHhhcCCcc
Confidence 5555555556666666666666666665544
No 471
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=31.16 E-value=40 Score=40.12 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=26.7
Q ss_pred CccCcccccCCCCCEEcCCCCc-----ccHHHHHHHHH--hCCCCCCCCCCCCcCC
Q 008465 164 DFRCPISLELMKDPVIVSTGQT-----YERSCIEKWLE--AGHRTCPKTQQTLTST 212 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~~cg~t-----~~r~ci~~~~~--~~~~~CP~~~~~l~~~ 212 (564)
.+.||-|+........-.||.. +|..|=.+--. .+...||.|+.++...
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 3788888875444333347643 36666221100 0123799998887633
No 472
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=30.98 E-value=3.4e+02 Score=27.85 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=63.6
Q ss_pred ChHHHHHHHhcC-------CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccC----------CHHHHHHHHH
Q 008465 341 AVPSIVHVLRIG-------SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG----------TQRGKKDAAT 403 (564)
Q Consensus 341 ~i~~Lv~lL~~~-------~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~----------~~~~~~~a~~ 403 (564)
.+|-++.++..+ +..........+..|..++.......-...+|.++..+-.. .-.+|..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 356666666443 35555666677777777665444333344677777666321 2367888999
Q ss_pred HHHHhhcccChhHHHHHcCChHHHHHhccCCCc--chHHHHHHHHHHh
Q 008465 404 ALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGG--GMVDEALAILAIL 449 (564)
Q Consensus 404 aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~al~~L~~L 449 (564)
.|..++..-.....-+...++..+.+.|.++.. ...--|+..|..|
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999988654444333444555567777765332 2244455555544
No 473
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=30.82 E-value=1.8e+02 Score=29.75 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHhcC--ChHHHHHHHhcCC---hHHHHHHHHHHHHHhcCCHHHHH
Q 008465 438 MVDEALAILAILSSHPEGKAAIGAAE--AVPVLVEVIGNGS---PRNRENAAAVLVHLCAGDQQYLA 499 (564)
Q Consensus 438 ~~~~al~~L~~L~~~~~~~~~i~~~g--~i~~Lv~lL~~~~---~~~k~~A~~~L~~L~~~~~~~~~ 499 (564)
++-.|+.+|..+...+.....+...+ .+..|+++++.+. ..++..|+.+|..|+........
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 34456666666677777777777766 8999999998653 67899999999999986654443
No 474
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=30.63 E-value=41 Score=28.03 Aligned_cols=51 Identities=20% Similarity=0.551 Sum_probs=29.9
Q ss_pred CCCccCcccccCCCCCEEc-CCC-----CcccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 008465 162 PDDFRCPISLELMKDPVIV-STG-----QTYERSCIEKWLEAGHRTCPKTQQTLTSTA 213 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~-~cg-----~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 213 (564)
.+.+.|||+++...+=|.+ ..+ .-|+...+.+....|. .=|.+|.+++...
T Consensus 38 ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~-~HPLSREpit~sM 94 (113)
T PF06416_consen 38 EEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGA-PHPLSREPITPSM 94 (113)
T ss_dssp CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTT
T ss_pred HHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCC-CCCCccCCCChhh
Confidence 4568999999999988876 232 2499999999888543 3577777776443
No 475
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=30.34 E-value=30 Score=33.80 Aligned_cols=32 Identities=28% Similarity=0.703 Sum_probs=0.0
Q ss_pred ccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCC---------CCCCCCCCCCcCC
Q 008465 165 FRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGH---------RTCPKTQQTLTST 212 (564)
Q Consensus 165 f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~---------~~CP~~~~~l~~~ 212 (564)
+.|+||+..|..| |+-.|+ +.||.|++.|.+.
T Consensus 188 c~C~iCGKaFSRP----------------WLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 188 CECGICGKAFSRP----------------WLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccccccccch----------------HHhhcccccccCCCCccCCcccchhcch
No 476
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=30.25 E-value=1.3e+02 Score=25.43 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=32.2
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008465 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKE 503 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~ 503 (564)
+|+.|+.-|.+.++.+...|+.+|...|... .....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5788999999999999999999999999866 55555544
No 477
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=29.97 E-value=2.1e+02 Score=24.57 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcccCC--ccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 008465 315 TQEHAVTALLNLSICE--DNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLS 368 (564)
Q Consensus 315 i~~~A~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls 368 (564)
++...+.++..++..+ ... ...++.++..+++ ++........+|..+.
T Consensus 4 i~~kl~~~l~~i~~~~~P~~W-----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQW-----PDFLEDLLQLLQS-SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhC-----chHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 4455556666665432 221 3456777777776 3555556666666554
No 478
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.85 E-value=40 Score=30.45 Aligned_cols=31 Identities=19% Similarity=0.741 Sum_probs=24.8
Q ss_pred cCCCCcccHHHHHHHHHh-----C-----CCCCCCCCCCCc
Q 008465 180 VSTGQTYERSCIEKWLEA-----G-----HRTCPKTQQTLT 210 (564)
Q Consensus 180 ~~cg~t~~r~ci~~~~~~-----~-----~~~CP~~~~~l~ 210 (564)
..||+.|..-|+..|++. . -..||.|..++.
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 579999999999999973 1 136999988775
No 479
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=29.83 E-value=37 Score=19.72 Aligned_cols=8 Identities=25% Similarity=0.679 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 008465 201 TCPKTQQT 208 (564)
Q Consensus 201 ~CP~~~~~ 208 (564)
.||.|+.+
T Consensus 15 fC~~CG~~ 22 (23)
T PF13240_consen 15 FCPNCGTP 22 (23)
T ss_pred chhhhCCc
Confidence 34544443
No 480
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=29.82 E-value=3.5e+02 Score=31.02 Aligned_cols=111 Identities=12% Similarity=0.133 Sum_probs=66.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhH-HHH-Hc
Q 008465 344 SIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG-KAV-RA 421 (564)
Q Consensus 344 ~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~-~i~-~~ 421 (564)
.+...+..++..+......++..+.........- ...-+++-..-....-..+......+|..++..+.... .+. +.
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~ 523 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDP 523 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCc
Confidence 3444445556666666666666666544321111 11111121111122123445567778888887755533 344 57
Q ss_pred CChHHHHHhccCCCcchHHHHHHHHHHhcCChhhH
Q 008465 422 GVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK 456 (564)
Q Consensus 422 g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~ 456 (564)
++...++.++.+++.++...|..+|....+ .++|
T Consensus 524 ~~~~~i~s~lfsp~~~l~qaA~~llk~~~d-~~~R 557 (727)
T PF12726_consen 524 DAAQAIWSLLFSPDDDLYQAAQDLLKQAFD-VDGR 557 (727)
T ss_pred chhhHHHhheeCCChHHHHHHHHHHHHHhc-CCcH
Confidence 899999999999999999999999999886 3343
No 481
>PLN03205 ATR interacting protein; Provisional
Probab=29.82 E-value=1.8e+02 Score=30.19 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=75.0
Q ss_pred ChHHHHHhccCCCcchHHHHHHHHHHh----cCChhhHHHHHhcCChHHHHHHHh-----cCChHHHHHHHHHHHHHhcC
Q 008465 423 VVPTLMHLLTEPGGGMVDEALAILAIL----SSHPEGKAAIGAAEAVPVLVEVIG-----NGSPRNRENAAAVLVHLCAG 493 (564)
Q Consensus 423 ~i~~Lv~lL~~~~~~~~~~al~~L~~L----~~~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~~k~~A~~~L~~L~~~ 493 (564)
.+.+|+++..-++..++..++.+|..+ +.+..--++-.+.+.+. |++++. +....++..|+.+.--+...
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvs-LfElm~QiAv~~TEE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHS-LFELMNQIASIRTEEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHH-HHHHHHHHHhccchhheeeehhhhhHHhhhc
Confidence 345677776667778888888877754 33332222223334333 334332 23466788888877666554
Q ss_pred CHHH--HHHHHHcCCHHHHHHhhhcC-CHHHHHHHHHHHHHHHhhHHHHHHHh
Q 008465 494 DQQY--LAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSRFIEQQKQAQ 543 (564)
Q Consensus 494 ~~~~--~~~~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~~~~~~~~~~ 543 (564)
+..+ +..+...-+++.+..+++.. ...+++.|..+|-.|-..+..-+..-
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFc 455 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFD 455 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHh
Confidence 4433 34444556788888888764 68899999999988877665544443
No 482
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=29.80 E-value=24 Score=31.36 Aligned_cols=25 Identities=28% Similarity=0.694 Sum_probs=17.8
Q ss_pred CCCCcccHHHHHHHHH----------hCCCCCCCCCCCCc
Q 008465 181 STGQTYERSCIEKWLE----------AGHRTCPKTQQTLT 210 (564)
Q Consensus 181 ~cg~t~~r~ci~~~~~----------~~~~~CP~~~~~l~ 210 (564)
.+||.|+ .||. .|--+||.|+..-.
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~~V 43 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGSTEV 43 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCCeE
Confidence 3578875 5775 36779999987643
No 483
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=29.76 E-value=66 Score=26.34 Aligned_cols=64 Identities=20% Similarity=0.375 Sum_probs=35.5
Q ss_pred CCCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc---CCCCCchHHHHHHHHHHHHHcC
Q 008465 158 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT---STAVTPNYVLRSLIAQWCEANG 232 (564)
Q Consensus 158 ~~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~---~~~l~~n~~l~~~i~~~~~~~~ 232 (564)
+..+|..|.||.|...-....++ .+-...+..+|..|+..+. ..-+.|-..-...+..+++.++
T Consensus 16 ~~~L~k~FtCp~Cghe~vs~ctv-----------kk~~~~g~~~Cg~CGls~e~ev~~l~~~vDvYs~wvDay~eg~~ 82 (104)
T COG4888 16 PQVLPKTFTCPRCGHEKVSSCTV-----------KKTVNIGTAVCGNCGLSFECEVPELSEPVDVYSAWVDAYLEGRG 82 (104)
T ss_pred CccCCceEecCccCCeeeeEEEE-----------EecCceeEEEcccCcceEEEeccccccchhHHHHHHHHHHhccc
Confidence 34588999999998654422121 1111225567888888764 2234444444455555555443
No 484
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=29.73 E-value=31 Score=25.25 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=20.0
Q ss_pred CccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCC
Q 008465 164 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQT 208 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~ 208 (564)
.|.||-|.+.+.- -|..|= .......||.|+..
T Consensus 27 ~F~CPnCGe~~I~---------Rc~~CR---k~g~~Y~Cp~CGF~ 59 (61)
T COG2888 27 KFPCPNCGEVEIY---------RCAKCR---KLGNPYRCPKCGFE 59 (61)
T ss_pred EeeCCCCCceeee---------hhhhHH---HcCCceECCCcCcc
Confidence 4899999976542 133331 12234689999753
No 485
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=29.36 E-value=1.3e+03 Score=29.56 Aligned_cols=260 Identities=11% Similarity=-0.004 Sum_probs=135.3
Q ss_pred cCCHHHHHHHHHHHHHHHhhChhhHH---HHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCCccchhhhccCChH
Q 008465 268 SGSPEDQRSAAGEIRLLAKRNADNRV---AIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVP 343 (564)
Q Consensus 268 s~~~~~~~~al~~L~~L~~~~~~~r~---~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~ 343 (564)
+.+..+...|+..|+.++-..-+..+ .=....++.+|..++.. .+.++++..+.++.++..... ..| .. |.+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI-kS-GWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV-KS-GWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh-hc-CcH
Confidence 44667888888888888753332211 11223466777776654 578999999999988853211 122 22 566
Q ss_pred HHHHHHhc----CCHHHHHHHHHHHHhccCCcchhhHhhh--c----CChHHHHHhhccC-CHHHHHHHHHHHHHhhccc
Q 008465 344 SIVHVLRI----GSMEARENAAATLFSLSVIDENKVTIGA--S----GAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQ 412 (564)
Q Consensus 344 ~Lv~lL~~----~~~e~~~~a~~~L~~Ls~~~~~~~~i~~--~----g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~ 412 (564)
.+..+|.. ..+.+...|-.++..+..+. -..+.. . ..+..|..+.... +.++-..|+..|++++..-
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~--f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY--FPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh--hhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 77777653 35666677766666554221 111111 1 3344444444333 3444455666666442110
Q ss_pred ----------------------------Chh-----HHHHHcCChHHHHH---hccCCCcchHHHHHHHHHHhcC-C---
Q 008465 413 ----------------------------GNK-----GKAVRAGVVPTLMH---LLTEPGGGMVDEALAILAILSS-H--- 452 (564)
Q Consensus 413 ----------------------------~~~-----~~i~~~g~i~~Lv~---lL~~~~~~~~~~al~~L~~L~~-~--- 452 (564)
+.- ........++.|.. +..+...+|+..|+.+|..+-. +
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 000 00001223444333 3455788999999999885542 1
Q ss_pred --hhhHHHHHhcCChHHHHHHHhcC-----------------------ChHHHHHHHHHHHHHhcCCHHHHHHHH--HcC
Q 008465 453 --PEGKAAIGAAEAVPVLVEVIGNG-----------------------SPRNRENAAAVLVHLCAGDQQYLAEAK--ELG 505 (564)
Q Consensus 453 --~~~~~~i~~~g~i~~Lv~lL~~~-----------------------~~~~k~~A~~~L~~L~~~~~~~~~~~~--~~g 505 (564)
++....+.+ +++-++++.++.. +....+.+..+|.+++.--..+-..+- =.+
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~ 1460 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKK 1460 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123334443 4666676666421 011344455555555432222222221 124
Q ss_pred CHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008465 506 VMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 506 ~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
++..|...+...+..+-+.+..+|..|..
T Consensus 1461 ~l~ll~~ci~q~n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1461 VLMLLVSFIKRPHQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 55555555566677777777777766653
No 486
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.21 E-value=9.7 Score=29.36 Aligned_cols=11 Identities=27% Similarity=0.455 Sum_probs=8.4
Q ss_pred ccCcccccCCC
Q 008465 165 FRCPISLELMK 175 (564)
Q Consensus 165 f~Cpic~~lm~ 175 (564)
+.||+|.--|.
T Consensus 2 llCP~C~v~l~ 12 (88)
T COG3809 2 LLCPICGVELV 12 (88)
T ss_pred cccCcCCceee
Confidence 47999987665
No 487
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=28.89 E-value=4.6e+02 Score=24.12 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=48.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcc
Q 008465 258 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 327 (564)
Q Consensus 258 ~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs 327 (564)
.++.+++..-+.+...+..|+..|....+..--|-. -.+|.|+.+..++++.++..|...+..+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 455666666778888999998888877654322221 25689999999999999999998888774
No 488
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=28.47 E-value=2.4e+02 Score=24.81 Aligned_cols=110 Identities=22% Similarity=0.194 Sum_probs=57.2
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHH
Q 008465 381 GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIG 460 (564)
Q Consensus 381 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~ 460 (564)
..-..+..+|.+++.++++.|+.+|..--.. .+.. .=+.|-.++.+ ...++.-. .+. +.......+.--
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~~-----~l~p--Y~d~L~~Lldd--~~frdeL~-~f~-~~~~~~~I~~eh 85 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKDP-----YLTP--YKDNLENLLDD--KTFRDELT-TFN-LSDESSVIEEEH 85 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----HHHh--HHHHHHHHcCc--chHHHHHH-hhc-ccCCcCCCCHHH
Confidence 5566788999999999999999999864221 1111 11334455542 23333322 222 222222222222
Q ss_pred hcCChHHHHHHHhc------CC--hH-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008465 461 AAEAVPVLVEVIGN------GS--PR-NRENAAAVLVHLCAGDQQYLAEAKE 503 (564)
Q Consensus 461 ~~g~i~~Lv~lL~~------~~--~~-~k~~A~~~L~~L~~~~~~~~~~~~~ 503 (564)
+..++|.++.+|.. ++ .. .+.. .+|..|....++....+++
T Consensus 86 R~~l~pvvlRILygk~~~~~~~~~~~~~rR~--aIL~~L~~l~~~El~~Fl~ 135 (141)
T PF07539_consen 86 RPELMPVVLRILYGKMQSRKGSGSKKASRRA--AILRFLAGLSEEELGLFLD 135 (141)
T ss_pred HhHHHHHHHHHHHHHHhhcCCCCCcchHHHH--HHHHHHhCCCHHHHHHHHH
Confidence 34577888887742 22 22 3333 4566666656555555444
No 489
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=28.22 E-value=41 Score=28.03 Aligned_cols=20 Identities=45% Similarity=0.938 Sum_probs=15.8
Q ss_pred CCEEcC---CCCcccHHHHHHHHH
Q 008465 176 DPVIVS---TGQTYERSCIEKWLE 196 (564)
Q Consensus 176 dPv~~~---cg~t~~r~ci~~~~~ 196 (564)
.||.++ |+ |.||.|+++|..
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~ 86 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHG 86 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhC
Confidence 688763 44 689999999986
No 490
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.14 E-value=31 Score=32.61 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=27.7
Q ss_pred CcccccCCCCCEEcCCCC-cccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 167 CPISLELMKDPVIVSTGQ-TYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 167 Cpic~~lm~dPv~~~cg~-t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
|-.|.+--..=+.+||.| .+|..|=. +-.+||.|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~-----~~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDE-----SLRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEecccccc-----cCccCCCCcChhh
Confidence 888887666644569987 57888832 3567999977643
No 491
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=28.12 E-value=7.4 Score=39.01 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=20.4
Q ss_pred CCccCcccccCCCCCEEcCC---C--CcccHHHHHHHHHhCCCCCCCCCCC
Q 008465 163 DDFRCPISLELMKDPVIVST---G--QTYERSCIEKWLEAGHRTCPKTQQT 208 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~~~c---g--~t~~r~ci~~~~~~~~~~CP~~~~~ 208 (564)
..-.||+|+..-.--++..- | +-+|..|=..|.- ....||.|+..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-cCCCCcCCCCC
Confidence 34699999985443344433 4 4578889888865 34579999775
No 492
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.76 E-value=40 Score=36.04 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=29.7
Q ss_pred CCCccCcccccCCCC-CEEcCCCCcccHHHHHHHHH
Q 008465 162 PDDFRCPISLELMKD-PVIVSTGQTYERSCIEKWLE 196 (564)
Q Consensus 162 p~~f~Cpic~~lm~d-Pv~~~cg~t~~r~ci~~~~~ 196 (564)
.....|.||.+-..+ .+.+.|||-||..|+..++.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 567899999987775 55679999999999999886
No 493
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=27.73 E-value=3.7e+02 Score=27.89 Aligned_cols=174 Identities=16% Similarity=0.089 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHHHhcccCCc---cchhhhccCChHHHHHHHhc-----------CCHHHHHHHHHHHHhccCCcchh
Q 008465 309 STPDSRTQEHAVTALLNLSICED---NKGSIVSSGAVPSIVHVLRI-----------GSMEARENAAATLFSLSVIDENK 374 (564)
Q Consensus 309 ~~~~~~i~~~A~~~L~nLs~~~~---~~~~i~~~g~i~~Lv~lL~~-----------~~~e~~~~a~~~L~~Ls~~~~~~ 374 (564)
...+..-+..|...|.+.-...+ ....+ ..-++.++++++. .+.++...|+.+|..+..++.-.
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l--~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQAL--QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 34455566677766666533222 12222 2234445554431 14567788999998887766655
Q ss_pred hHhhhc---CChHHHHHhhccC--CHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccC-----CCcchHHHHHH
Q 008465 375 VTIGAS---GAIPPLVTLLSEG--TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-----PGGGMVDEALA 444 (564)
Q Consensus 375 ~~i~~~---g~i~~Lv~lL~~~--~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~al~ 444 (564)
..+... -.+...+..+.++ +..+....+++|..=-. ...++....+..++..+.. ++..+....+.
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f----~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~ 156 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKF----SPKIMTSDRVERLLAALHNIKNRFPSKSIISERLN 156 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC----CCcccchhhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 544443 1445555555443 33455555555542111 1223344445555554432 45677888899
Q ss_pred HHHHhcCChhhHHHHHhc--CChHHHHHHHhcCChHHHHHHHHHHHHH
Q 008465 445 ILAILSSHPEGKAAIGAA--EAVPVLVEVIGNGSPRNRENAAAVLVHL 490 (564)
Q Consensus 445 ~L~~L~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~k~~A~~~L~~L 490 (564)
++.+|....... +++. --++.++..+-+....++..|..++..+
T Consensus 157 i~~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 157 IYKRLLSQFPQQ--MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEA 202 (372)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 998887543222 2222 2577777777666667777666555444
No 494
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=27.62 E-value=7.6 Score=42.40 Aligned_cols=151 Identities=15% Similarity=0.053 Sum_probs=90.6
Q ss_pred HHHHhccCCcchhhHhhhc-CChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHH
Q 008465 362 ATLFSLSVIDENKVTIGAS-GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVD 440 (564)
Q Consensus 362 ~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 440 (564)
.+..+||+...|+..+... -....|+-...-.-..+...|+.++.||+.-.... +-....+..+-+-+.+.+..+..
T Consensus 15 tv~r~LSf~~~n~~~~~~~~p~~~~lVm~a~~~ws~~~Vqal~s~~nlaqpt~~e--~S~~~~L~t~t~Gi~S~drflim 92 (847)
T KOG2312|consen 15 TVSRMLSFKRQNQQQHSPAPPPQQVLVMVAQPQWSQMQVQALQSNANLAQPTSGE--SSLIKQLLTPTRGISSPDRFLIM 92 (847)
T ss_pred eeeeeeccchhhhcccCCCCChhheeeeecccccchhhhHhhhhhcccCCcchhh--hhHHHHHhhhccCCCCCCceeEe
Confidence 3456778777888777665 22333332222223456778899999998722211 11112233334445567778888
Q ss_pred HHHHHHHHhcCChhhHHHH---HhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHhh
Q 008465 441 EALAILAILSSHPEGKAAI---GAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKE-LGVMGPLVDLA 514 (564)
Q Consensus 441 ~al~~L~~L~~~~~~~~~i---~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~Ll 514 (564)
.++.+|..||..+.+-..| ++.......+..+.-.+.-+.......|..|...++..+..+.+ .+.+..|+.+.
T Consensus 93 r~lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~ 170 (847)
T KOG2312|consen 93 RALEILPPLCGREGNPQVICQVLSNDAYGFIVQGLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLS 170 (847)
T ss_pred eccccCcccccCCCCceeehhhhchHHHHHHHhccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccc
Confidence 9999999999876554333 34455666666665445445555556666666655555555544 57788888775
No 495
>PF15616 TerY-C: TerY-C metal binding domain
Probab=26.88 E-value=25 Score=30.55 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=30.7
Q ss_pred CCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008465 160 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.+...=.||-|....--.+- .||+.+|-. ..+..+||-|++...
T Consensus 73 eL~g~PgCP~CGn~~~fa~C-~CGkl~Ci~------g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 73 ELIGAPGCPHCGNQYAFAVC-GCGKLFCID------GEGEVTCPWCGNEGS 116 (131)
T ss_pred HhcCCCCCCCCcChhcEEEe-cCCCEEEeC------CCCCEECCCCCCeee
Confidence 34444689999976554333 799998843 235789999988754
No 496
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=26.68 E-value=2e+02 Score=24.69 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHH
Q 008465 395 QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAIL 446 (564)
Q Consensus 395 ~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L 446 (564)
......++.++...... -....+.+...++.+.++|. ++.++..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~-~~~~~i~~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISW-IPIELIINSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTT-S-HHHHHSSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCHHHhccHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 67778888888877663 23335566778888888885 445577777765
No 497
>PLN03205 ATR interacting protein; Provisional
Probab=25.90 E-value=5.1e+02 Score=27.10 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHhcccCC--c-cchhhhccCChHHHHHHHhcC-CHHHHHHHHHHHHhc
Q 008465 312 DSRTQEHAVTALLNLSICE--D-NKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSL 367 (564)
Q Consensus 312 ~~~i~~~A~~~L~nLs~~~--~-~~~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~L 367 (564)
...++..|+.++--+.... . .|+.+....+++.+-++|+.. ..-++..|...|+-|
T Consensus 385 EE~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLL 444 (652)
T PLN03205 385 EEDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLL 444 (652)
T ss_pred hhheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 4556777777766554433 2 377788888899999999876 466788888777655
No 498
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=25.88 E-value=1.1e+02 Score=22.34 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCcCCCCCc
Q 008465 198 GHRTCPKTQQTLTSTAVTP 216 (564)
Q Consensus 198 ~~~~CP~~~~~l~~~~l~~ 216 (564)
.|++||+|++.++....+-
T Consensus 7 PH~HC~VCg~aIp~de~~C 25 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQVC 25 (64)
T ss_pred CCccccccCCcCCCccchH
Confidence 4778999988887655443
No 499
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=25.58 E-value=6.4e+02 Score=24.63 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=60.3
Q ss_pred CHHHHHHhhCC-----------CCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHH--------HHHHH
Q 008465 300 AIPLLVGLLST-----------PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSME--------ARENA 360 (564)
Q Consensus 300 ~i~~Lv~lL~~-----------~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e--------~~~~a 360 (564)
++|.|+.+|.. ++.....+|+..|..+ .+..++++|+++++.++.- +-+..
T Consensus 32 i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~----------re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l 101 (249)
T PF06685_consen 32 ITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF----------REERALPPLIRLFSQDDDFLEDLFGDFITEDL 101 (249)
T ss_pred hhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH----------hhhhhHHHHHHHHcCCcchHHHHHcchhHhHH
Confidence 56777776653 1222334555555333 3566889999999765421 11111
Q ss_pred HHHHHhccCCcchhhHhhhcCChHHHHHhhccCC--HHHHHHHHHHHHHhhcccCh-hHHHHH
Q 008465 361 AATLFSLSVIDENKVTIGASGAIPPLVTLLSEGT--QRGKKDAATALFNLCIYQGN-KGKAVR 420 (564)
Q Consensus 361 ~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~nL~~~~~~-~~~i~~ 420 (564)
..+|..+ -.|-++.|.+++.+++ .=+|..|+.+|..+...... |..+++
T Consensus 102 ~~ilasv-----------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 102 PRILASV-----------GDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHHHH-----------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 2222222 2377889999998874 45788999999999877665 555543
No 500
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=25.56 E-value=9.2 Score=29.99 Aligned_cols=37 Identities=24% Similarity=0.602 Sum_probs=28.6
Q ss_pred ccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008465 165 FRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 165 f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
-.|-||......| |..||..|-.+ ...|.+|++.+..
T Consensus 55 ~kC~iCk~~vHQ~-----GshYC~tCAY~-----KgiCAMCGKki~n 91 (100)
T KOG3476|consen 55 AKCRICKQLVHQP-----GSHYCQTCAYK-----KGICAMCGKKILN 91 (100)
T ss_pred chhHHHHHHhcCC-----cchhHhHhhhh-----hhHHHHhhhHhhc
Confidence 5799999988877 77899999643 3468888887653
Done!